BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015091
(413 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 487 bits (1254), Expect = e-137, Method: Compositional matrix adjust.
Identities = 242/360 (67%), Positives = 276/360 (76%), Gaps = 10/360 (2%)
Query: 56 WATQAAAPQAAGVAVP---PQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVK 112
WA Q + Q +A P G P E+R+LWIGDLQYWMDE YL+TCF HTGE+V+ K
Sbjct: 55 WAQQPSQQQYGAMATTNPNPSPTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAK 114
Query: 113 VIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP 172
VIRNKQTGQ EGYGF+EF S A AE +LQT+NGT MPN EQNFR+NWAS GAGE+RDD+
Sbjct: 115 VIRNKQTGQSEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDSA 174
Query: 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRA 232
+HTIFVGDLAADVTDY+LQETF++ Y S +GAKVV DR+TGR+KGYGFV+F DESEQLRA
Sbjct: 175 EHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRA 234
Query: 233 MTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDS 292
MTEMNGV CSTRPMRIGPA NKK V Q KA+YQN Q Q + DPNNTT+FVG LD
Sbjct: 235 MTEMNGVLCSTRPMRIGPAANKKPVGTPQ---KATYQNPQATQGESDPNNTTIFVGGLDP 291
Query: 293 IVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352
V +EHLR++FS YG+LVHVKI AGKRCGFVQF R+ AE+AL LNGTQLGGQ+IRLSW
Sbjct: 292 TVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGGQSIRLSW 351
Query: 353 GRSPSNKQAQPDPNQWNAGYYGYAQGYENYGYAAAAP--QDPSMYYGGYPGYGNYQQPQQ 410
GRSPS+KQ D QW Y + Y AP QDP+MYYG YPGY NYQQPQQ
Sbjct: 352 GRSPSSKQT--DQTQWGGSGGAYYGYGQGYEAYGYAPPAQDPNMYYGNYPGYANYQQPQQ 409
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 485 bits (1248), Expect = e-136, Method: Compositional matrix adjust.
Identities = 260/397 (65%), Positives = 295/397 (74%), Gaps = 36/397 (9%)
Query: 1 MMQPAPGAVPP--PPPPMAAHQYQYQQQAPPQQQPPPQPSPYMMMMPPQPQAQPPAMWAT 58
M QP PG + P PPP A QY YQQ PP PP MW
Sbjct: 2 MQQPPPGGILPHHAPPPSAQQQYGYQQPYGIAGAAPP----------------PPQMWNP 45
Query: 59 QAAAPQAAGVAVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQ 118
QAAAP P Q EIRTLWIGDLQYWMDE +L CFAHTGE+V+ KVIRNKQ
Sbjct: 46 QAAAP-------PSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQ 98
Query: 119 TGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG-EQNFRLNWASFGAGEKRDDTPDHTIF 177
TGQ+EGYGFIEF S A AERVLQTFN P+P+ +Q FRLNWAS +G+KRDD+PD+TIF
Sbjct: 99 TGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIF 158
Query: 178 VGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237
VGDLAADVTDY+L ETFRA YPS KGAKVVIDR+TGRTKGYGFVRF DESEQ+RAMTEMN
Sbjct: 159 VGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMN 218
Query: 238 GVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQV-AQSDDDPNNTTVFVGNLDSIVTD 296
GV CSTRPMRIGPA +KK V+GQ+ SYQ+S +D+DPNNTTVFVG LD+ VTD
Sbjct: 219 GVPCSTRPMRIGPAASKKGVTGQRD----SYQSSAAGVTTDNDPNNTTVFVGGLDASVTD 274
Query: 297 EHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 356
+HL+ +FSQYG++VHVKIPAGKRCGFVQF+++SCAEEALRMLNG QLGG +RLSWGRSP
Sbjct: 275 DHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSP 334
Query: 357 SNKQAQPDPNQWNAGYYGYAQGYENYGYAAAAPQDPS 393
SNKQ+ DP+Q+ Y GY QG E YGY PQDP+
Sbjct: 335 SNKQSG-DPSQFY--YGGYGQGQEQYGY--TMPQDPN 366
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 418 bits (1074), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/319 (64%), Positives = 239/319 (74%), Gaps = 10/319 (3%)
Query: 52 PPAMWATQAAAPQAAGVAVPPQQQ-----GQPGEIRTLWIGDLQYWMDETYLNTCFAHTG 106
PPA W Q+A G GEIR+LWIGDLQ WMDE YL F TG
Sbjct: 45 PPAGWNQQSAPSSGQPQQQQYGGGGSQNPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTG 104
Query: 107 EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGE 166
E A KVIRNKQ G EGYGFIEF++ A AER LQT+NG PMP+ EQ FRLNWA GAGE
Sbjct: 105 EATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGE 164
Query: 167 KRD-DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGD 225
+R + P+HT+FVGDLA DVTD+ML ETF+A Y S KGAKVV DR TGR+KGYGFVRF D
Sbjct: 165 RRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFAD 224
Query: 226 ESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTV 285
ESEQ+RAMTEMNG +CS+RPMR GPA NKK ++ Q ASYQN+Q + DP NTT+
Sbjct: 225 ESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQ----PASYQNTQGNSGESDPTNTTI 280
Query: 286 FVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGG 345
FVG +D VT++ L+ +F Q+G+LVHVKIPAGKRCGFVQ+A+R+CAE+AL +LNGTQLGG
Sbjct: 281 FVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGG 340
Query: 346 QNIRLSWGRSPSNKQAQPD 364
Q+IRLSWGRSPSNKQ QPD
Sbjct: 341 QSIRLSWGRSPSNKQTQPD 359
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 417 bits (1073), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/331 (64%), Positives = 254/331 (76%), Gaps = 13/331 (3%)
Query: 69 AVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFI 128
+ Q G ++++LWIGDLQ WMDE Y+ + FA +GE + KVIRNK TGQ EGYGFI
Sbjct: 47 GIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFI 106
Query: 129 EFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT--PDHTIFVGDLAADVT 186
EF+S + AERVLQT+NG PMP+ EQ FRLNWA GAGEKR T PDHTIFVGDLA +VT
Sbjct: 107 EFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVT 166
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
DYML +TF+ Y S KGAKVV+DR TGR+KGYGFVRF DE+EQ+RAMTEMNG +CSTRPM
Sbjct: 167 DYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPM 226
Query: 247 RIGPATNKKTVSGQQQYPKASYQNSQVAQS-DDDPNNTTVFVGNLDSIVTDEHLRELFSQ 305
RIGPA NK + Q A YQN+Q A + D+DPNNTT+FVG LD+ VTD+ L+ +F Q
Sbjct: 227 RIGPAANKNALPMQ----PAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQ 282
Query: 306 YGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDP 365
+G+L+HVKIP GKRCGFVQ+A+++ AE AL +LNGTQLGGQ+IRLSWGRSP NKQ+ D
Sbjct: 283 FGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSP-NKQS--DQ 339
Query: 366 NQWN-AGYYGY-AQGYENYGYAAAAP-QDPS 393
QWN GYYGY Q YGYAA P QDP+
Sbjct: 340 AQWNGGGYYGYPPQPQGGYGYAAQPPTQDPN 370
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/356 (59%), Positives = 260/356 (73%), Gaps = 20/356 (5%)
Query: 71 PPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEF 130
P Q Q + +T+WIGDLQ WMDE+YL++CF+ GEV++VK+IRNKQTGQ E YGF+EF
Sbjct: 73 PTQIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEF 132
Query: 131 ISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT-PDHTIFVGDLAADVTDYM 189
+ A AE+VLQ++NGT MPN EQ FRLNWA F GEKR +T D +IFVGDLA+DVTD M
Sbjct: 133 NTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTM 192
Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
L++TF +RYPS KGAKVV+D TG +KGYGFVRFGDESE+ RAMTEMNGV+CS+R MRIG
Sbjct: 193 LRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIG 252
Query: 250 PATNKKTVSGQQQYPK------ASYQNSQVA----QSDDDPNNTTVFVGNLDSIVTDEHL 299
AT KK S +QY Y ++ A QSD D +NTT+FVG LDS VTDE L
Sbjct: 253 VATPKKP-SAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEEL 311
Query: 300 RELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 359
R+ F+Q+G++V VKIPAGK CGFVQF+DRS A+EA++ L+G +G Q +RLSWGRSP+NK
Sbjct: 312 RQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANK 371
Query: 360 QAQPDP-NQWNAGYYGYAQGYENYGYAAAAPQDPSMY-----YGGYPG-YGNYQQP 408
Q + D +QWN GY G Q Y YGY A+ QD MY YG YGN+QQP
Sbjct: 372 QMRTDSGSQWNGGYNG-RQNYGGYGYGASQNQDSGMYATGAAYGASSNRYGNHQQP 426
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/348 (57%), Positives = 238/348 (68%), Gaps = 22/348 (6%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E+RTLWIGDLQYW+DE YL +CF+ TGE+V+VKVIRNK TGQ EGYGFIEFIS A AER
Sbjct: 22 EVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERT 81
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
LQT+NGT MP E FRLNWASFG+G+K D PDH+IFVGDLA DVTDY+LQETFR Y
Sbjct: 82 LQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYS 141
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSG 259
S +GAKVV D TGR+KGYGFV+F +ESE+ RAM EMNG++CSTRPMRI AT KK V
Sbjct: 142 SVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGV 201
Query: 260 QQQY-PKASY-----------QNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYG 307
QQQY KA Y + VA + D TT+ V NLD VT+E L++ FSQ G
Sbjct: 202 QQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLG 261
Query: 308 QLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK--QAQPDP 365
++++VKIPA K G+VQF R AEEA++ + G +G Q +R+SW ++P Q DP
Sbjct: 262 EVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQDGWVTQADP 321
Query: 366 NQWNAGYYGYAQGYENYGYAAAAPQDPSMYYGGYPGYGNYQQPQQPQQ 413
NQWN Y G YA A QDPS+Y YG Y PQ PQQ
Sbjct: 322 NQWNG---YYGYGQGYDAYAYGATQDPSVY-----AYGGYGYPQYPQQ 361
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 375 bits (962), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/311 (58%), Positives = 229/311 (73%), Gaps = 14/311 (4%)
Query: 75 QGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRA 134
+G +++TLW+GDL +WMDETYL++CF+HTGEV +VKVIRNK T Q EGYGF+EF+SRA
Sbjct: 101 RGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRA 160
Query: 135 GAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQE 192
AE VLQ ++G+ MPN +Q FR+NWASF GEKR ++ PD ++FVGDL+ DVTD +L E
Sbjct: 161 AAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHE 220
Query: 193 TFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
TF RYPS K AKVVID TGR+KGYGFVRFGDE+E+ RA+TEMNG +CS R MR+G AT
Sbjct: 221 TFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIAT 280
Query: 253 NKKTVSGQQQYPKASY-------QNSQV---AQSDDDPNNTTVFVGNLDSIVTDEHLREL 302
K+ ++ QQQ+ + N + +QSD + N T+FVG +D V DE LR+
Sbjct: 281 PKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQP 340
Query: 303 FSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
FSQ+G++V VKIP GK CGFVQFADR AE+A+ LNGT +G +RLSWGRSP NKQ +
Sbjct: 341 FSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQWR 399
Query: 363 PDPN-QWNAGY 372
D QWN GY
Sbjct: 400 GDSGQQWNGGY 410
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 375 bits (962), Expect = e-103, Method: Compositional matrix adjust.
Identities = 199/345 (57%), Positives = 241/345 (69%), Gaps = 17/345 (4%)
Query: 73 QQQGQPGEIRTLWIGDLQYWMDETYLNTCF--AHTGEVVAVKVIRNKQTGQIEGYGFIEF 130
Q GE +T+W+GDLQ WMDE YLN+ F A E+V++KVIRNK G EGYGF+EF
Sbjct: 94 HQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEF 153
Query: 131 ISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDY 188
S A++VLQ FNG PMPN +Q FRLNWASF GEKR ++ PD +IFVGDLA DV+D
Sbjct: 154 ESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDA 213
Query: 189 MLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
+L ETF +YPS K AKVV+D TGR+KGYGFVRFGDE+E+ +AMTEMNGV CS+R MRI
Sbjct: 214 LLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 273
Query: 249 GPATNKKTVSGQQQ---YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQ 305
GPAT +KT QQQ P ++ +S+ D NTT+FVG LDS VTDE L++ FS+
Sbjct: 274 GPATPRKTNGYQQQGGYMPSGAF-----TRSEGDTINTTIFVGGLDSSVTDEDLKQPFSE 328
Query: 306 YGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD- 364
+G++V VKIP GK CGFVQF +R AEEAL LNGT +G Q +RLSWGR+P+NKQ +
Sbjct: 329 FGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKY 388
Query: 365 PNQWNAGYYGYAQGYENYGYAAAAPQDPSMYYGG--YPGYGNYQQ 407
NQW YYG Q Y YGY P DP MY YP YG +QQ
Sbjct: 389 GNQWVDPYYG-GQFYNGYGYMVPQP-DPRMYPAAPYYPMYGGHQQ 431
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust.
Identities = 194/336 (57%), Positives = 238/336 (70%), Gaps = 11/336 (3%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGE--VVAVKVIRNKQTGQIEGYGFIEFISRAGA 136
GE +T+W+GDL +WMDE YLN+ FA E +V+VKVIRNK G EGYGF+EF S A
Sbjct: 98 GENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVA 157
Query: 137 ERVLQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQETF 194
++VL+ FNGT MPN +Q FRLNWASF GEKR ++ PD +IFVGDL+ DV+D +L ETF
Sbjct: 158 DKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETF 217
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+YPS K AKVV+D TGR+KGYGFVRFGDE+E+ +AMTEMNGV CS+R MRIGPAT +
Sbjct: 218 SEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPR 277
Query: 255 KTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI 314
KT QQQ N + + + D NTT+FVG LDS VTDE L++ F+++G++V VKI
Sbjct: 278 KTNGYQQQ--GGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI 335
Query: 315 PAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD-PNQWNAGYY 373
P GK CGFVQF +R AEEAL LNGT +G Q +RLSWGR+P+NKQ + NQW YY
Sbjct: 336 PVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYY 395
Query: 374 GYAQGYENYGYAAAAPQDPSMYYGG--YPGYGNYQQ 407
G Q Y YGY P DP MY YP YG +QQ
Sbjct: 396 G-GQFYNGYGYMVPQP-DPRMYPAAPYYPMYGGHQQ 429
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 322 bits (826), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 176/354 (49%), Positives = 215/354 (60%), Gaps = 74/354 (20%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+++TLW+GDL +WMDETYL+TCF+HT EV +VKVIRNKQT Q EGYGF+EF+SR+ AE
Sbjct: 117 DVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEA 176
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQETFRAR 197
LQ+F+G MPN EQ FRLNWASF GEKR ++ PD +IFVGDLA DV+D +L ETF R
Sbjct: 177 LQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGR 236
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
YPS KGAKVVID TGR+KGYGFVRFGDE+E+ RAMTEMNG FCS+R MR+G AT K+
Sbjct: 237 YPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAA 296
Query: 258 S-----GQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 312
+ G Q A + SD + NN+T+FVG LD+ VT+E L + FS +G++V V
Sbjct: 297 AYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSV 356
Query: 313 KIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDP------- 365
KIP GK CGFVQFA N+Q+ +
Sbjct: 357 KIPVGKGCGFVQFA-------------------------------NRQSAEEAIGNLNGT 385
Query: 366 ------------------------NQWNAGYYGYAQGYENYGYAAAAPQDPSMY 395
NQWN G Y QGY N GY A QD +MY
Sbjct: 386 VIGKNTVRLSWGRSPNKQWRSDSGNQWNGG-YSRGQGYNN-GY---ANQDSNMY 434
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 223 bits (568), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 117/283 (41%), Positives = 164/283 (57%), Gaps = 11/283 (3%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
TLW+G+L+ W+ E ++ + G+ V VK+IRN+ TG GY F+EF S A + +
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-S 152
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRD--DTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
N P+P F+LNWAS G ++ +++IFVGDL+ +V ++ + F +RY S
Sbjct: 153 MNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNS 212
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK----- 255
K AK++ D T ++GYGFVRF DE++Q A+ EM G C RP+R+G AT K
Sbjct: 213 CKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVF 272
Query: 256 ---TVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 312
V P Y +Q D N+TVFVG L V++E L+ LF +G++V+V
Sbjct: 273 SPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYV 332
Query: 313 KIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355
KIP GK CGFVQF +R AE A+ L G LG IRLSWGR+
Sbjct: 333 KIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 88/215 (40%), Gaps = 33/215 (15%)
Query: 148 MPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVV 207
M + E N +++G+ + T+++G+L VT+ +Q+ + + K K++
Sbjct: 67 MASNESGNSENTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVK-VKLI 125
Query: 208 IDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM-----RIGPATNKKTVSGQQQ 262
+R TG GY FV F E AM+ N T + G +K++S +
Sbjct: 126 RNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLFKLNWASGGGLREKSISKASE 185
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELF-SQYGQLVHVKI------P 315
Y ++FVG+L V + + LF S+Y KI
Sbjct: 186 Y--------------------SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTN 225
Query: 316 AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 350
+ GFV+F D + + AL + G G + IR+
Sbjct: 226 VSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRV 260
Score = 35.4 bits (80), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 283 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALR 336
TT+++G L+ VT+ ++++++ G+ V VK+ + G FV+FA A A+
Sbjct: 93 TTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMS 152
Query: 337 MLNGTQLGGQNI-RLSWG 353
M N G ++ +L+W
Sbjct: 153 MNNKPIPGTNHLFKLNWA 170
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 216 bits (551), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/284 (40%), Positives = 167/284 (58%), Gaps = 13/284 (4%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQ--IEGYGFIEFISRAGAERVL 140
TLW+GDL+ WMD T++ +A E V VKV+R+K + + Y F++F S A AER L
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDD----TPDHTIFVGDLAADVTDYMLQETFRA 196
+N T +P F+LNWA+ G G + ++ P+ +IFVGDL D L TFR+
Sbjct: 146 MKYNNTMIPGAHCTFKLNWAT-GGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRS 204
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
YPS AK+++D +TG ++ YGFVRF E EQ A+ M G C RP+RI A+ K
Sbjct: 205 IYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSR 264
Query: 257 VSGQQQYPK----ASYQNSQVAQ--SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLV 310
S S N Q Q DP NTTVFVG L S ++++ L+ F +G+++
Sbjct: 265 ASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRIL 324
Query: 311 HVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354
++KIP GK CGFVQ++++S AE+A+ + G +G +IRL+WG
Sbjct: 325 NIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGH 368
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 78/203 (38%), Gaps = 30/203 (14%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHT-GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
++++GDL +++ L F + K+I + TG YGF+ F S + L
Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALM 242
Query: 142 TFNGTPMPNGEQNFRL----NWASFGAGEKRDDTP------------------DHTIFVG 179
G + + AS A P + T+FVG
Sbjct: 243 HMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVG 302
Query: 180 DLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239
LA+++++ LQ F+ P + + I KG GFV++ ++S +A+ M G
Sbjct: 303 GLASNLSEKDLQVCFQ---PFGRILNIKIPF----GKGCGFVQYSEKSAAEKAINTMQGA 355
Query: 240 FCSTRPMRIGPATNKKTVSGQQQ 262
T +R+ N VS Q
Sbjct: 356 LVGTSHIRLAWGHNTLPVSALSQ 378
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 174 bits (442), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 113/331 (34%), Positives = 168/331 (50%), Gaps = 60/331 (18%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEV-VAVKVIRNKQTGQ----------IEGYGFIEFIS 132
L++GDL D+ + +A GE + V+++ N +GY F++F S
Sbjct: 56 LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPS 115
Query: 133 RAGAERVLQTFNGTPMPNG-EQNFRLNWASFGAGEKRDDTP------DHTIFVGDLAADV 185
A L NG +PN + +LNWA+ + + +IFVGDLA +V
Sbjct: 116 STHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNV 174
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
T+ L E F RY ST AK+V D++TG +KGYGFV+F + EQ A++EM GVF + R
Sbjct: 175 TESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRA 234
Query: 246 MRIGPATN-KKTVSGQQQYPKAS----------------------------YQNSQVAQ- 275
+++GP + ++ VSG Y ++S ++ + ++Q
Sbjct: 235 IKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKRNHMSQF 294
Query: 276 -----------SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQ 324
DPNNTTVF+G L S+VT++ LR F +G +V+VKIP GK CGFVQ
Sbjct: 295 IYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQ 354
Query: 325 FADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355
+ DR AE A+ + G + +RLSWGRS
Sbjct: 355 YVDRLSAEAAIAGMQGFPIANSRVRLSWGRS 385
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T++IG L + E L F G +V VK+ K G F++++ R AE +
Sbjct: 314 TVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCG------FVQYVDRLSAEAAIAG 367
Query: 143 FNGTPMPNGEQNFRLNW 159
G P+ N RL+W
Sbjct: 368 MQGFPIANSR--VRLSW 382
>sp|Q9NX07|TSAP1_HUMAN tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens
GN=TRNAU1AP PE=1 SV=1
Length = 287
Score = 159 bits (401), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 121/178 (67%), Gaps = 7/178 (3%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKT 256
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V ++P+R+ A K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 178
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 23/184 (12%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + + F + K++ +RLTG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV 294
++NG +P+ G K+ Y K Q D+ P ++FVG+L V
Sbjct: 64 KING-----KPLP-GATPAKRFKLNYATYGK---------QPDNSP-EYSLFVGDLTPDV 107
Query: 295 TDEHLRELFSQY------GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNG-TQLGGQN 347
D L E F + G++V + K GFV+F D + AL G LG +
Sbjct: 108 DDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 167
Query: 348 IRLS 351
+RLS
Sbjct: 168 VRLS 171
Score = 36.2 bits (82), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 14/89 (15%)
Query: 284 TVFVGNLDSIVTDEHLRELFSQYGQLV-HVKIPAGKRCG------FVQFADRSCAEEALR 336
++++G+L+ + + + F+ G+ V VKI + G FV+FAD + AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 337 MLNGTQLGG----QNIRL---SWGRSPSN 358
+NG L G + +L ++G+ P N
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYGKQPDN 92
>sp|Q1RMJ7|TSAP1_BOVIN tRNA selenocysteine 1-associated protein 1 OS=Bos taurus
GN=TRNAU1AP PE=2 SV=1
Length = 287
Score = 158 bits (400), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 120/178 (67%), Gaps = 7/178 (3%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-CSTRPMRIGPATNKKT 256
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G ++P+R+ A K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKAS 178
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 23/184 (12%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + + F + K++ +RLTG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV 294
++NG +P+ G K+ Y K Q D+ P ++FVG+L V
Sbjct: 64 KING-----KPLP-GATPAKRFKLNYATYGK---------QPDNSP-EYSLFVGDLTPDV 107
Query: 295 TDEHLRELFSQY------GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNG-TQLGGQN 347
D L E F + G++V + K GFV+F D + AL G LG +
Sbjct: 108 DDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKP 167
Query: 348 IRLS 351
+RLS
Sbjct: 168 VRLS 171
Score = 35.8 bits (81), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 14/89 (15%)
Query: 284 TVFVGNLDSIVTDEHLRELFSQYGQLV-HVKIPAGKRCG------FVQFADRSCAEEALR 336
++++G+L+ + + + F+ G+ V VKI + G FV+FAD + AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 337 MLNGTQLGG----QNIRL---SWGRSPSN 358
+NG L G + +L ++G+ P N
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYGKQPDN 92
>sp|Q9QZI7|TSAP1_RAT tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus
GN=Trnau1ap PE=1 SV=1
Length = 287
Score = 158 bits (400), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 120/178 (67%), Gaps = 7/178 (3%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKT 256
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V +P+R+ A K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKAS 178
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 23/184 (12%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + + F + K++ +RLTG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV 294
++NG +P+ G K+ Y K Q D+ P ++FVG+L V
Sbjct: 64 KING-----KPLP-GATPAKRFKLNYATYGK---------QPDNSP-EYSLFVGDLTPDV 107
Query: 295 TDEHLRELFSQY------GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNG-TQLGGQN 347
D L E F + G++V + K GFV+F D + AL G LG +
Sbjct: 108 DDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKP 167
Query: 348 IRLS 351
+RLS
Sbjct: 168 VRLS 171
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 14/89 (15%)
Query: 284 TVFVGNLDSIVTDEHLRELFSQYGQLV-HVKIPAGKRCG------FVQFADRSCAEEALR 336
++++G+L+ + + + F+ G+ V VKI + G FV+FAD + AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 337 MLNGTQLGG----QNIRL---SWGRSPSN 358
+NG L G + +L ++G+ P N
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYGKQPDN 92
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2
Length = 672
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 124/426 (29%), Positives = 180/426 (42%), Gaps = 130/426 (30%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQ----------------------- 118
RTLW+GDL DE + ++ + V VK+IR K+
Sbjct: 34 RTLWMGDLDPSFDEATIEEIWSKLDKKVIVKLIRAKKNLLIPCSSTSSSNNNTSEENAEN 93
Query: 119 -------TGQIE-----------------------GYGFIEFISRAGAERVLQTFNGTPM 148
T Q++ GY F+EF ++ A+ L + N TP+
Sbjct: 94 QQSASNSTDQLDNSQMININGISFIDPSTTQLHHAGYCFVEFETQKDAKFAL-SLNATPL 152
Query: 149 PNG-------------EQNFRLNWASFGAGEKRD--DTPDHTIFVGDLAADVTDYMLQET 193
PN ++ FRLNWAS GA + TP+ ++FVGDL+ T+ L
Sbjct: 153 PNFYSPTTNSQTNPTFKRTFRLNWAS-GATLQSSIPSTPEFSLFVGDLSPTATEADLLSL 211
Query: 194 FRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT- 252
F+ R+ S K +V+ D LTG ++ +GFVRFGDE E+ RA+ EM+G + R +R+ AT
Sbjct: 212 FQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYATP 271
Query: 253 ---------------------------------------NKKTVSGQQQYPKASYQN--- 270
N + P + N
Sbjct: 272 RNNMMLQLQEQQQQQQQLQQQHQQLDQEDNNGPLLIKTANNLIQNNSNMLPLNALHNAPP 331
Query: 271 --------SQVAQSDDDPNNT--------TVFVGNLDSIVTDEHLRELFSQYGQLVHVKI 314
S + +D P+NT TVFVG L T+ LR LF +G +++V+I
Sbjct: 332 MHLNEGGISNMRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRI 391
Query: 315 PAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAGYYG 374
P GK CGFV+F R AE +++ L G +GG IRLSWGR PS+ A+ + A Y
Sbjct: 392 PNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR-PSSSNAKTNSTIMGASQYM 450
Query: 375 YAQGYE 380
+ G
Sbjct: 451 SSNGLR 456
>sp|Q5R462|TSAP1_PONAB tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii
GN=TRNAU1AP PE=2 SV=1
Length = 287
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 120/178 (67%), Gaps = 7/178 (3%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+ ++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYVTYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKT 256
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V ++P+R+ A K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 178
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 23/184 (12%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + + F + K++ +RLTG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV 294
++NG +P+ G K+ Y K Q D+ P ++FVG+L V
Sbjct: 64 KING-----KPLP-GATPAKRFKLNYVTYGK---------QPDNSP-EYSLFVGDLTPDV 107
Query: 295 TDEHLRELFSQY------GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNG-TQLGGQN 347
D L E F + G++V + K GFV+F D + AL G LG +
Sbjct: 108 DDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 167
Query: 348 IRLS 351
+RLS
Sbjct: 168 VRLS 171
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 14/89 (15%)
Query: 284 TVFVGNLDSIVTDEHLRELFSQYGQLV-HVKIPAGKRCG------FVQFADRSCAEEALR 336
++++G+L+ + + + F+ G+ V VKI + G FV+FAD + AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 337 MLNGTQLGG----QNIRL---SWGRSPSN 358
+NG L G + +L ++G+ P N
Sbjct: 64 KINGKPLPGATPAKRFKLNYVTYGKQPDN 92
>sp|Q80VC6|TSAP1_MOUSE tRNA selenocysteine 1-associated protein 1 OS=Mus musculus
GN=Trnau1ap PE=1 SV=2
Length = 287
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 119/178 (66%), Gaps = 7/178 (3%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKT 256
S +G KVV+D TG +KGYGFV+F DE EQ RA+TE G V +P+R+ A K +
Sbjct: 122 SCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKAS 178
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 23/184 (12%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + + F + K++ +RLTG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV 294
++NG +P+ G K+ Y K Q D+ P ++FVG+L V
Sbjct: 64 KING-----KPLP-GATPAKRFKLNYATYGK---------QPDNSP-EYSLFVGDLTPDV 107
Query: 295 TDEHLRELFSQY------GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNG-TQLGGQN 347
D L E F + G++V K GFV+F D + AL G LG +
Sbjct: 108 DDGMLYEFFVKVYPSCRGGKVVLDPTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKP 167
Query: 348 IRLS 351
+RLS
Sbjct: 168 VRLS 171
Score = 36.2 bits (82), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 14/89 (15%)
Query: 284 TVFVGNLDSIVTDEHLRELFSQYGQLV-HVKIPAGKRCG------FVQFADRSCAEEALR 336
++++G+L+ + + + F+ G+ V VKI + G FV+FAD + AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 337 MLNGTQLGG----QNIRL---SWGRSPSN 358
+NG L G + +L ++G+ P N
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYGKQPDN 92
>sp|Q4KM14|TSP1L_DANRE tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio
GN=trnau1apl PE=2 SV=1
Length = 316
Score = 135 bits (341), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 110/178 (61%), Gaps = 7/178 (3%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEV-VAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+ +LW+GDL +MDE ++ F+ GE VK+I ++ TG GY F+E A +R
Sbjct: 5 MTSLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRC 64
Query: 140 LQTFNGTPMP--NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
+Q NG +P N + F+LN+A++G ++ + P+ ++FVGDL ++V DY L + F +
Sbjct: 65 VQRLNGKLVPGSNPPRKFKLNYATYG--KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKK 122
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM-NGVFCSTRPMRIGPATNK 254
+PS KGAKVV D G ++GYGFV+F DE+EQ +A+ E N +P+RI A NK
Sbjct: 123 FPSCKGAKVVTDPY-GNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNK 179
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 27/196 (13%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + +++ F + G K++ R+TG + GY FV DE+ R +
Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQ 66
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPN-NTTVFVGNLDSI 293
+NG ++ P +N P+ N +P +VFVG+L S
Sbjct: 67 RLNG--------KLVPGSNP---------PRKFKLNYATYGKRPEPGPEFSVFVGDLTSE 109
Query: 294 VTDEHLRELF-----SQYGQLVHVKIPAG--KRCGFVQFADRSCAEEALRML-NGTQLGG 345
V D L + F S G V V P G + GFV+F+D + ++AL N + LGG
Sbjct: 110 VDDYQLHQFFLKKFPSCKGAKV-VTDPYGNSRGYGFVKFSDENEQKKALEEFQNASGLGG 168
Query: 346 QNIRLSWGRSPSNKQA 361
+ IR+S + NK +
Sbjct: 169 KPIRISIAVNKGNKAS 184
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 283 TTVFVGNLDSIVTDEHLRELFSQYGQLVH-VKIPAGKRCG------FVQFADRSCAEEAL 335
T++++G+LD + + +++ FS G+ VKI + G FV+ AD + + +
Sbjct: 6 TSLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCV 65
Query: 336 RMLNGTQLGGQN 347
+ LNG + G N
Sbjct: 66 QRLNGKLVPGSN 77
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 131 bits (330), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 158/317 (49%), Gaps = 17/317 (5%)
Query: 73 QQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFIS 132
+ GQP RTL++G+L + E + F+ G + K+I + + Y F+EF
Sbjct: 3 EDDGQP---RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYE 57
Query: 133 RAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQE 192
A L NG + E ++NWA+ + +K+D + +FVGDL+ ++T ++
Sbjct: 58 HRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKS 115
Query: 193 TFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
F A + A+VV D TG++KGYGFV F ++ + A+ M G + R +R AT
Sbjct: 116 AF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWAT 174
Query: 253 NK--KTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLV 310
K S Q+ K V QS P N TV+ G + S +TD+ +R+ FS +GQ++
Sbjct: 175 RKPPAPKSTQENNTKQLRFEDVVNQS--SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIM 232
Query: 311 HVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQA--QPDPNQ 367
+++ K FV+F+ A A+ +NGT + G ++ WG+ SP + Q D +Q
Sbjct: 233 EIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQ 292
Query: 368 WN--AGYYGYAQGYENY 382
W + YG Q Y Y
Sbjct: 293 WGQWSQVYGNPQQYGQY 309
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 82/189 (43%), Gaps = 27/189 (14%)
Query: 69 AVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFI 128
P Q+ +++GDL + + + FA G++ +V+++ TG+ +GYGF+
Sbjct: 84 TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFV 143
Query: 129 EFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS------------------FGAGEKRDD 170
F ++ AE + G + G + R NWA+ F +
Sbjct: 144 SFYNKLDAENAIVHMGGQWL--GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSS 201
Query: 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQL 230
+ T++ G +A+ +TD ++++TF P + +++ KGY FVRF
Sbjct: 202 PKNCTVYCGGIASGLTDQLMRQTFS---PFGQ----IMEIRVFPEKGYSFVRFSTHESAA 254
Query: 231 RAMTEMNGV 239
A+ +NG
Sbjct: 255 HAIVSVNGT 263
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 161/323 (49%), Gaps = 39/323 (12%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTP----------DH-TIFVGDLAADVTDYML 190
NG + E ++NWA+ + +K+D + DH +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+ F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 251 ATNKKTVSGQQQYPKASYQNSQVAQSDDD------PNNTTVFVGNLDSIVTDEHLRELFS 304
AT K PK++Y+++ S D+ PNN TV+ G + S +T++ +R+ FS
Sbjct: 182 ATRKPPA------PKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFS 235
Query: 305 QYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR------SPSN 358
+GQ++ +++ K FV+F+ A A+ +NGT + G ++ WG+ +P
Sbjct: 236 PFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQ 295
Query: 359 KQAQ----PDPNQWNAGYYGYAQ 377
+Q Q P QW +YG AQ
Sbjct: 296 QQNQIGYPPTYGQWGQ-WYGNAQ 317
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 17/191 (8%)
Query: 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227
D+ P T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 2 EDEMPK-TLYVGNLSRDVTEALILQLFSQIGP-CKNCKMIMD--TAGNDPYCFVEFHEHR 57
Query: 228 EQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFV 287
A+ MNG + +++ AT T S Q K +S V + ++ VFV
Sbjct: 58 HAAAALAAMNGRKIMGKEVKVNWAT---TPSSQ----KKDTSSSTVVSTQRSQDHFHVFV 110
Query: 288 GNLDSIVTDEHLRELFSQYGQLVHVKIP------AGKRCGFVQFADRSCAEEALRMLNGT 341
G+L +T E ++ F+ +G++ ++ K GFV F ++ AE A++ + G
Sbjct: 111 GDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 170
Query: 342 QLGGQNIRLSW 352
LGG+ IR +W
Sbjct: 171 WLGGRQIRTNW 181
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAE 332
+D T++VGNL VT+ + +LFSQ G + K+ AG C FV+F + A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAA 60
Query: 333 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 360
AL +NG ++ G+ ++++W +PS+++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQK 88
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 155/330 (46%), Gaps = 26/330 (7%)
Query: 73 QQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNK--------------- 117
+ GQP RTL++G+L + E + F+ G + K+I +
Sbjct: 3 EDDGQP---RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVL 59
Query: 118 QTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIF 177
Q + Y F+EF A L NG + E ++NWA+ + +K+D + +F
Sbjct: 60 QHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVF 117
Query: 178 VGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237
VGDL+ ++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M
Sbjct: 118 VGDLSPEITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Query: 238 GVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDE 297
G + R +R AT K Q + + P N TV+ G + S +TD+
Sbjct: 177 GQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQ 236
Query: 298 HLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SP 356
+R+ FS +GQ++ +++ K FV+F+ A A+ +NGT + G ++ WG+ SP
Sbjct: 237 LMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 296
Query: 357 SNKQA--QPDPNQWN--AGYYGYAQGYENY 382
+ Q D +QW + YG Q Y Y
Sbjct: 297 DMTKNFQQVDYSQWGQWSQVYGNPQQYGQY 326
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 82/189 (43%), Gaps = 27/189 (14%)
Query: 69 AVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFI 128
P Q+ +++GDL + + + FA G++ +V+++ TG+ +GYGF+
Sbjct: 101 TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFV 160
Query: 129 EFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS------------------FGAGEKRDD 170
F ++ AE + G + G + R NWA+ F +
Sbjct: 161 SFYNKLDAENAIVHMGGQWL--GGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSS 218
Query: 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQL 230
+ T++ G +A+ +TD ++++TF P + +++ KGY FVRF
Sbjct: 219 PKNCTVYCGGIASGLTDQLMRQTFS---PFGQ----IMEIRVFPEKGYSFVRFSTHESAA 271
Query: 231 RAMTEMNGV 239
A+ +NG
Sbjct: 272 HAIVSVNGT 280
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 161/323 (49%), Gaps = 39/323 (12%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTP----------DH-TIFVGDLAADVTDYML 190
NG + E ++NWA+ + +K+D + DH +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+ F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 251 ATNKKTVSGQQQYPKASYQNSQVAQSDDD------PNNTTVFVGNLDSIVTDEHLRELFS 304
AT K PK++Y+++ S D+ P+N TV+ G + S +T++ +R+ FS
Sbjct: 182 ATRKPPA------PKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFS 235
Query: 305 QYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR------SPSN 358
+GQ++ +++ K FV+F A A+ +NGT + G ++ WG+ +P
Sbjct: 236 PFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQ 295
Query: 359 KQAQ---PDP-NQWNAGYYGYAQ 377
+Q Q P P QW +YG AQ
Sbjct: 296 QQNQIGYPQPYGQWGQ-WYGNAQ 317
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 17/191 (8%)
Query: 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227
D+ P T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 2 EDEMPK-TLYVGNLSRDVTEALILQLFSQIGP-CKNCKMIMD--TAGNDPYCFVEFHEHR 57
Query: 228 EQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFV 287
A+ MNG + +++ AT T S Q K +S V + ++ VFV
Sbjct: 58 HAAAALAAMNGRKIMGKEVKVNWAT---TPSSQ----KKDTSSSTVVSTQRSQDHFHVFV 110
Query: 288 GNLDSIVTDEHLRELFSQYGQLVHVKIP------AGKRCGFVQFADRSCAEEALRMLNGT 341
G+L +T E ++ F+ +G++ ++ K GFV F ++ AE A++ + G
Sbjct: 111 GDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 170
Query: 342 QLGGQNIRLSW 352
LGG+ IR +W
Sbjct: 171 WLGGRQIRTNW 181
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAE 332
+D T++VGNL VT+ + +LFSQ G + K+ AG C FV+F + A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAA 60
Query: 333 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 360
AL +NG ++ G+ ++++W +PS+++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQK 88
>sp|Q503H1|TSAP1_DANRE tRNA selenocysteine 1-associated protein 1 OS=Danio rerio
GN=trnau1ap PE=2 SV=1
Length = 314
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 107/189 (56%), Gaps = 11/189 (5%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+ +LW+G+L+ +MDE ++ FA GE VV +++IR+K TG+ GYGF+E ER
Sbjct: 1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERC 60
Query: 140 LQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
L+ NG P+P + F+L+ +++G K+ ++ ++FV DL DV D ML E F
Sbjct: 61 LRKVNGKPLPGATPPKRFKLSRSNYG---KQGESSTFSLFVSDLTPDVDDGMLYEFFHYH 117
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-CSTRPMRIGPAT---N 253
+ S K+V+D G +K GFV F E EQ RA+ ++ G + +R+ A+ N
Sbjct: 118 FSSCCSGKIVLDA-NGHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSRVN 176
Query: 254 KKTVSGQQQ 262
KK S + Q
Sbjct: 177 KKKESSENQ 185
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 89/201 (44%), Gaps = 24/201 (11%)
Query: 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233
+++++G+L + + + F + +++ D++TG+ GYGFV D++ R +
Sbjct: 2 NSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCL 61
Query: 234 TEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSI 293
++NG +P+ G K+ + Y K + + ++FV +L
Sbjct: 62 RKVNG-----KPLP-GATPPKRFKLSRSNYGKQG-----------ESSTFSLFVSDLTPD 104
Query: 294 VTDEHLRELFSQY------GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNG-TQLGGQ 346
V D L E F + G++V K CGFV F + AL L G T LG +
Sbjct: 105 VDDGMLYEFFHYHFSSCCSGKIVLDANGHSKCCGFVSFESEREQKRALVDLQGATGLGKK 164
Query: 347 NIRLSWGRSPSNKQAQPDPNQ 367
+RLS S NK+ + NQ
Sbjct: 165 ALRLSLASSRVNKKKESSENQ 185
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 135/278 (48%), Gaps = 27/278 (9%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL+ + E +L F+ G V +++V R+ T GY ++ F + ++
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 98
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N TP+ + R+ W+ ++ + + IF+ +L D+ + L +TF +
Sbjct: 99 LNYTPIKG--RLCRIMWSQRDPSLRKKGSGN--IFIKNLHPDIDNKALYDTFSV-FGDIL 153
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
+K+ D G++KG+GFV F +E A+ +NG+ + + + + P ++K Q +
Sbjct: 154 SSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLE 212
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG----- 317
KA Y T ++V N++S TDE +ELF+++G +V +
Sbjct: 213 ETKAHY--------------TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKL 258
Query: 318 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355
K GFV + A +A+ LN ++L G+ +L GR+
Sbjct: 259 KGFGFVNYEKHEDAVKAVEALNDSELNGE--KLYVGRA 294
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 140/293 (47%), Gaps = 26/293 (8%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D L F+ G++++ K+ + + G+ +G+GF+ F A+ +
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDA 185
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHT------IFVGDLAADVTDYMLQETFRA 196
NG + NG++ + A + ++RD + T ++V ++ ++ TD QE F A
Sbjct: 186 LNGMLL-NGQEIY---VAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELF-A 240
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA--TNK 254
++ A + D G+ KG+GFV + + ++A+ +N + + +G A N+
Sbjct: 241 KFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNE 299
Query: 255 KTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI 314
+ ++QY +Y+ ++A+ +FV NLD V DE L E F+ YG + K+
Sbjct: 300 RMHVLKKQYE--AYRLEKMAKY----QGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKV 353
Query: 315 P-----AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K GFV F+ A +A+ N + G+ + ++ + +++Q
Sbjct: 354 MRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 406
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 36/213 (16%)
Query: 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYG 219
A+ G+ + + +++VGDL V++ L + F + S +V D +T + GY
Sbjct: 24 AATGSESQSVENSSASLYVGDLEPSVSEAHLYDIF-SPIGSVSSIRVCRDAITKTSLGYA 82
Query: 220 FVRFGDESEQLRAMTEMN-----GVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVA 274
+V F D +A+ ++N G C + P+ KK
Sbjct: 83 YVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKK------------------- 123
Query: 275 QSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-----GKRCGFVQFADRS 329
+ +F+ NL + ++ L + FS +G ++ KI K GFV F +
Sbjct: 124 ------GSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEG 177
Query: 330 CAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
A+EA+ LNG L GQ I ++ S + +Q
Sbjct: 178 AAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQ 210
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 145/308 (47%), Gaps = 34/308 (11%)
Query: 53 PAMWATQAAAPQAAGVAVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVK 112
P + A ++A+P A A P +L++G+L + E L F+ G+V +++
Sbjct: 30 PEVTAVESASPSATPSANQPHSA-------SLYVGELDPSVTEAMLYELFSSIGQVASIR 82
Query: 113 VIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP 172
V R+ T + GY ++ + + A ER L+ N T + + R+ W+ ++ T
Sbjct: 83 VCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRK--TG 138
Query: 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRA 232
+F+ +L A + + L +TF A + + KV D G +KGYGFV + A
Sbjct: 139 QGNVFIKNLDAAIDNKALHDTF-AAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNA 196
Query: 233 MTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDS 292
+ +NG+ + + + +G +KK + + KA++ N V++ N+D
Sbjct: 197 IKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTN--------------VYIKNIDQ 242
Query: 293 IVTDEHLRELFSQYGQLVHVKIP-----AGKRCGFVQFADRSCAEEALRMLNGTQLGGQN 347
VTDE R++F ++G++ + + GFV F+ A+ A+ +N ++ GQ
Sbjct: 243 EVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQ- 301
Query: 348 IRLSWGRS 355
+L GR+
Sbjct: 302 -KLYVGRA 308
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 25/241 (10%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L+ FA G +++ KV ++ + G +GYGF+ + + A ++
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--------TIFVGDLAADVTDYMLQETFR 195
NG + N ++ F + S K+D +++ ++ +VTD ++ F
Sbjct: 201 NGMLL-NDKKVFVGHHIS-----KKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFE 254
Query: 196 ARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK- 254
++ A + D+ G+++G+GFV F A+ EMN + + +G A K
Sbjct: 255 -KFGEITSATLSRDQ-EGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKH 312
Query: 255 -KTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVK 313
+ ++QY A + + Q ++V NL V DE LRELFS +G + K
Sbjct: 313 EREEELRKQYEAARLEKASKYQG------VNLYVKNLTDDVDDEKLRELFSPFGTITSAK 366
Query: 314 I 314
+
Sbjct: 367 V 367
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 85/234 (36%), Gaps = 60/234 (25%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I ++ + + F GE+ + + R+ Q G+ G+GF+ F + A+ +
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRD-QEGKSRGFGFVNFSTHDSAQAAVDEM 293
Query: 144 NGTPMP-------------NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYML 190
N + E+ R + + EK ++V +L DV D L
Sbjct: 294 NDKEIKGQKLYVGRAQKKHEREEELRKQYEA-ARLEKASKYQGVNLYVKNLTDDVDDEKL 352
Query: 191 QETFRARYPSTKGAKVVIDRLT-------------------------------------- 212
+E F + + + AKV+ D +T
Sbjct: 353 RELF-SPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKK 411
Query: 213 ------GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
G++KG+GFV F E +A+TEMN + +P+ + A K Q
Sbjct: 412 TEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 465
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 146/300 (48%), Gaps = 31/300 (10%)
Query: 58 TQAAAPQAAGVAVPPQQQGQPGEIRT------LWIGDLQYWMDETYLNTCFAHTGEVVAV 111
T+ A Q +++ +Q+G E ++ L++GDL + E +L F+ G V ++
Sbjct: 5 TEKTAEQLENLSLQDKQEGTNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSI 64
Query: 112 KVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT 171
+V R+ T GY ++ F A+ ++ N TP+ + R+ W+ ++
Sbjct: 65 RVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKG--KLCRIMWSQRDPSLRKKGA 122
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
+ IF+ +L D+ + L +TF + + +KV D TG++KG+G+V F ++
Sbjct: 123 GN--IFIKNLHPDIDNKALYDTFSV-FGNILSSKVATDE-TGKSKGFGYVHFEEDESASE 178
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLD 291
A+ +NG+ + + + +GP +KK + + KA++ T V++ N++
Sbjct: 179 AIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANF--------------TNVYIKNIN 224
Query: 292 SIVTDEHLRELFSQYGQ---LVHVKIPAG--KRCGFVQFADRSCAEEALRMLNGTQLGGQ 346
+ TD+ EL +++G+ +V + P G K GFV F + A + + LN T+ GQ
Sbjct: 225 TETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQ 284
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 133/288 (46%), Gaps = 18/288 (6%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G +++ KV + +TG+ +G+G++ F A +
Sbjct: 125 IFIKNLHPDIDNKALYDTFSVFGNILSSKVATD-ETGKSKGFGYVHFEEDESASEAIDAL 183
Query: 144 NGTPMPNGEQNF---RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
NG + NG++ + L+ + + +++ ++ + TD +E A++
Sbjct: 184 NGMLL-NGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELV-AKFGK 241
Query: 201 TKGAKVVIDRL-TGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSG 259
T VV++R G KG+GFV F + + ++ + E+N +P+ + A K
Sbjct: 242 TDS--VVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYE--- 296
Query: 260 QQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA--- 316
+QQ K Y+ +++ + +F+ NLD + D+ L E F+ YG + K+
Sbjct: 297 RQQELKKQYEATRMEKMAK-YQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTEN 355
Query: 317 --GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K GFV F+ A +A+ N + G+ + ++ + +++Q
Sbjct: 356 GKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 403
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 131/271 (48%), Gaps = 25/271 (9%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++G+L + E L F+ G V +++V R+ T + GY ++ + + A E+ L+
Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N T + + R+ W+ ++ T IF+ +L A + + L +TF A + +
Sbjct: 121 LNYTLIKG--RPCRIMWSQRDPALRK--TGAGNIFIKNLDAAIDNKALHDTF-AAFGNIL 175
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KV D G +KGYGFV + + +A+ +NG+ + + + +G KK + +
Sbjct: 176 SCKVAQDE-HGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 234
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP-----AG 317
KA++ T V+V N+++ VTDE RELF+++G++ +
Sbjct: 235 EMKANF--------------TNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKS 280
Query: 318 KRCGFVQFADRSCAEEALRMLNGTQLGGQNI 348
+ GFV F A +A+ LNG GQ++
Sbjct: 281 RGFGFVNFTTHEAAAQAVDELNGKDFRGQDL 311
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 116/245 (47%), Gaps = 31/245 (12%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D L+ FA G +++ KV +++ G +GYGF+ + + A + ++
Sbjct: 149 NIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKH 207
Query: 143 FNG-------------TPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYM 189
NG P + + F A+F ++V ++ +VTD
Sbjct: 208 VNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANF-----------TNVYVKNINNEVTDEE 256
Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
+E F A++ + + D+ G+++G+GFV F +A+ E+NG + + +G
Sbjct: 257 FRELF-AKFGEVTSSSLARDQ-EGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVG 314
Query: 250 PATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL 309
A K +++ + SY+ +++ ++ + +++ NL V D+ LR +FS+YG +
Sbjct: 315 RAQKKHE---REEELRKSYEAARLEKA-NKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPI 370
Query: 310 VHVKI 314
K+
Sbjct: 371 TSAKV 375
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/237 (20%), Positives = 86/237 (36%), Gaps = 68/237 (28%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+++ ++ + + FA GEV + + R+ Q G+ G+GF+ F + A + +
Sbjct: 242 NVYVKNINNEVTDEEFRELFAKFGEVTSSSLARD-QEGKSRGFGFVNFTTHEAAAQAVDE 300
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGDLAA 183
NG ++FR G +K+ + + +++ +L
Sbjct: 301 LNG-------KDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGD 353
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLT------------------------------- 212
DV D L+ F P T AKV+ D L
Sbjct: 354 DVDDDKLRAMFSEYGPITS-AKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKK 412
Query: 213 ---------GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
G++KG+GFV F + + +A+TEMN +P+ + A K Q
Sbjct: 413 TEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQ 469
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 135/285 (47%), Gaps = 26/285 (9%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVIKG--KPIRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D +KGY FV F + +A+ +MNG+ + R + +G ++K +
Sbjct: 127 SCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR 319
+ T V++ N V DE L+ELFSQ+G+ + VK+ P GK
Sbjct: 185 AKAKEF--------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS 230
Query: 320 --CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV + A +A+ +NG ++ G+ I + + +QA+
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 139/292 (47%), Gaps = 22/292 (7%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ ++ + GY F+ F ++ A++ +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAADKAI 155
Query: 141 QTFNGTPMPNGE------QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETF 194
+ NG + + + ++ + A GA K +++ + +V D L+E F
Sbjct: 156 EKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN----VYIKNFGEEVDDESLKELF 211
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+++ T KV+ D G++KG+GFV + + +A+ EMNG S + + +G A +
Sbjct: 212 -SQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA--Q 267
Query: 255 KTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI 314
K V Q + + Q Q + +++ NLD + DE LR+ FS +G + K+
Sbjct: 268 KKVERQAELKRKFEQLKQ--ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV 325
Query: 315 PA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAH 377
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 25/195 (12%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL +DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLD 291
A+ MN +P+RI Q+ P S + S V VF+ NLD
Sbjct: 68 ALDTMNFDVIKGKPIRI---------MWSQRDP--SLRKSGVG---------NVFIKNLD 107
Query: 292 SIVTDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQN 347
+ ++ L + FS +G ++ K+ K FV F + A++A+ +NG L +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 348 IRLSWGRSPSNKQAQ 362
+ + +S ++A+
Sbjct: 168 VFVGRFKSRKEREAE 182
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 108 bits (271), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 144/308 (46%), Gaps = 34/308 (11%)
Query: 53 PAMWATQAAAPQAAGVAVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVK 112
P + A ++A+P A P +L++G+L + E L F+ G+V +++
Sbjct: 30 PEVTAVESASPSTTPSASQPHSA-------SLYVGELDPSVTEAMLYELFSSIGQVASIR 82
Query: 113 VIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP 172
V R+ T + GY ++ + + A ER L+ N T + + R+ W+ ++ T
Sbjct: 83 VCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRK--TG 138
Query: 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRA 232
+F+ +L A + + L +TF A + + KV D G +KGYGFV + A
Sbjct: 139 QGNVFIKNLDAAIDNKALHDTF-AAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNA 196
Query: 233 MTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDS 292
+ +NG+ + + + +G +KK + + KA++ N V++ N+D
Sbjct: 197 IKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTN--------------VYIKNIDQ 242
Query: 293 IVTDEHLRELFSQYGQLVHVKIP-----AGKRCGFVQFADRSCAEEALRMLNGTQLGGQN 347
VTDE R++F ++G++ + + GFV F+ A+ A+ +N ++ GQ
Sbjct: 243 EVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQ- 301
Query: 348 IRLSWGRS 355
+L GR+
Sbjct: 302 -KLYVGRA 308
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 25/241 (10%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L+ FA G +++ KV ++ + G +GYGF+ + + A ++
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--------TIFVGDLAADVTDYMLQETFR 195
NG + N ++ F + S K+D +++ ++ +VTD ++ F
Sbjct: 201 NGMLL-NDKKVFVGHHIS-----KKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFE 254
Query: 196 ARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK- 254
++ A + D+ G+++G+GFV F A+ EMN + + +G A K
Sbjct: 255 -KFGEITSATLSRDQ-EGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKH 312
Query: 255 -KTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVK 313
+ ++QY A + + Q ++V NL V DE LRELFS +G + K
Sbjct: 313 EREEELRKQYEAARLEKASKYQG------VNLYVKNLTDDVDDEKLRELFSPFGTITSAK 366
Query: 314 I 314
+
Sbjct: 367 V 367
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/236 (19%), Positives = 85/236 (36%), Gaps = 62/236 (26%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I ++ + + F GE+ + + R+ Q G+ G+GF+ F + A+ +
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRD-QEGKSRGFGFVNFSTHDSAQAAVDEM 293
Query: 144 NGTPMP-------------NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYML 190
N + E+ R + + EK ++V +L DV D L
Sbjct: 294 NDKEIKGQKLYVGRAQKKHEREEELRKQYEA-ARLEKASKYQGVNLYVKNLTDDVDDEKL 352
Query: 191 QETFRARYPSTKGAKVVIDRLT-------------------------------------- 212
+E F + + + AKV+ D +T
Sbjct: 353 RELF-SPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEP 411
Query: 213 --------GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
G++KG+GFV F E +A+TEMN + +P+ + A K Q
Sbjct: 412 KKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 467
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 108 bits (270), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 134/295 (45%), Gaps = 26/295 (8%)
Query: 59 QAAAPQAAGVAVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQ 118
Q A P AG P P +L++G+L + E L F+ G V +++V R+
Sbjct: 43 QTADPDTAG-PTPSSAAPHPQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTI 101
Query: 119 TGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFV 178
T + GY ++ + S + E+ L+ N T + + R+ W+ ++ T +F+
Sbjct: 102 TRRSLGYAYVNYNSTSDGEKALEELNYTLIKG--RPCRIMWSQRDPALRK--TGQGNVFI 157
Query: 179 GDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
+L + + L +TF A + + KV D G +KGYGFV + + +A+ +N
Sbjct: 158 KNLDVAIDNKALHDTF-AAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAAQAIKHVNN 215
Query: 239 VFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 298
+ + + + +G KK + + KA++ T ++V N+ TDE
Sbjct: 216 MLLNEKKVYVGYHIPKKDRQSKFEEMKANF--------------TNIYVKNISLEATDEE 261
Query: 299 LRELFSQYGQLVHVKIP-----AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNI 348
R+LF++YG + + + GFV F CA +A+ LNG + GQ++
Sbjct: 262 FRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDL 316
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 115/245 (46%), Gaps = 31/245 (12%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D L+ FA G +++ KV ++ + G +GYGF+ + + A + ++
Sbjct: 154 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKH 212
Query: 143 FNG-------------TPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYM 189
N P + + F A+F I+V +++ + TD
Sbjct: 213 VNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANF-----------TNIYVKNISLEATDEE 261
Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
++ F A+Y + + D G+++G+GFV F +A+ E+NG + + +G
Sbjct: 262 FRDLF-AKYGDVTSSSLARDS-EGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVG 319
Query: 250 PATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL 309
A K +++ + SY+ +++ +++ +++ NL + D+ LR++FS+YG +
Sbjct: 320 RAQKKHE---REEELRKSYEAARLEKANKY-QGVNLYIKNLADDIDDDKLRQMFSEYGPI 375
Query: 310 VHVKI 314
K+
Sbjct: 376 TSAKV 380
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/235 (19%), Positives = 87/235 (37%), Gaps = 60/235 (25%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+++ ++ + FA G+V + + R+ + G+ G+GF+ F + A + ++
Sbjct: 247 NIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSE-GKSRGFGFVNFTTHECAAKAVEE 305
Query: 143 FNGTPM-------------PNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYM 189
NG E+ R ++ + EK + +++ +LA D+ D
Sbjct: 306 LNGKEFRGQDLYVGRAQKKHEREEELRKSYEA-ARLEKANKYQGVNLYIKNLADDIDDDK 364
Query: 190 LQETFRARYPSTKGAKVVIDRLT------------------------------------- 212
L++ F P T AKV+ D +T
Sbjct: 365 LRQMFSEYGPITS-AKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTE 423
Query: 213 -------GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
G++KG+GFV F + + +A+ EMN +P+ + A K Q
Sbjct: 424 KKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVRKNQ 478
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 142/301 (47%), Gaps = 34/301 (11%)
Query: 57 ATQAAAPQAAGVAVPPQQQGQPGEIR----TLWIGDLQYWMDETYLNTCFAHTGEVVAVK 112
AT ++ P A ++QG+ I +L++G+L ++E L F+ G+V +++
Sbjct: 43 ATSSSVP-----ADSAEEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIR 97
Query: 113 VIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP 172
V R+ + + GY ++ + E+ ++ N TP+ + R+ W+ +R +
Sbjct: 98 VCRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEG--RPCRIMWSQRDPSARR--SG 153
Query: 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRA 232
D IF+ +L + + L +TF A + KV D L G++K +GFV + E A
Sbjct: 154 DGNIFIKNLHPAIDNKALHDTFSA-FGKILSVKVATDDL-GQSKCFGFVHYETEEAAQAA 211
Query: 233 MTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDS 292
+ +NG+ + R + +G +KK + + KA+Y T ++V N+D
Sbjct: 212 IESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANY--------------TNIYVKNIDL 257
Query: 293 IVTDEHLRELFSQYGQLVHVKIP-----AGKRCGFVQFADRSCAEEALRMLNGTQLGGQN 347
T++ ELF+ +G++ + + K GFV F + A +A+ LN ++ GQ
Sbjct: 258 AYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQK 317
Query: 348 I 348
I
Sbjct: 318 I 318
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 126/276 (45%), Gaps = 25/276 (9%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D L+ F+ G++++VKV + GQ + +GF+ + + A+ +++
Sbjct: 156 NIFIKNLHPAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIES 214
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--TIFVGDLAADVTDYMLQETFRARYPS 200
NG + + E + + K ++ + I+V ++ T+ +E F P
Sbjct: 215 VNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFA---PF 271
Query: 201 TKGAKVVIDR-LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK--TV 257
K + +++ G++KG+GFV F + +A+ E+N + + + +G A K+ T
Sbjct: 272 GKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTE 331
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--- 314
++QY + Q +FV NLD + E L E F +G + K+
Sbjct: 332 ELKKQYEAVRLEKLSKYQG------VNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVD 385
Query: 315 PAGKR--CGFVQF-----ADRSCAEEALRMLNGTQL 343
AGK GFV F A ++ E RM+NG L
Sbjct: 386 DAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPL 421
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 88/197 (44%), Gaps = 29/197 (14%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+++ ++ E FA G++ ++ + ++ + G+ +G+GF+ F A + ++
Sbjct: 249 NIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAE-GKSKGFGFVNFEEHEAAAKAVEE 307
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGDLAA 183
N + NG++ + G +K+ + + +FV +L
Sbjct: 308 LNDKEI-NGQKIY------VGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDE 360
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
+ L+E F+ + + +KV++D G++KG+GFV F E +A+TEMN +
Sbjct: 361 QIDSEKLEEEFKP-FGTITSSKVMVDD-AGKSKGFGFVCFSTPEEATKAITEMNQRMVNG 418
Query: 244 RPMRIGPATNKKTVSGQ 260
+P+ + A K Q
Sbjct: 419 KPLYVALAQRKDVRRSQ 435
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 148/288 (51%), Gaps = 20/288 (6%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L+ F+ G +V+ KV + +GQ +GYGF+++ + A++ ++
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKL 184
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHT----IFVGDLAADVTDYMLQETFRARYP 199
NG + N +Q + F ++RD T + T ++V +LA TD L+ F Y
Sbjct: 185 NGMLL-NDKQVY---VGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAF-GEYG 239
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSG 259
A V+ D G++KG+GFV F + + RA+ +NG + +G A K S
Sbjct: 240 KITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKK---SE 295
Query: 260 QQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PA 316
++ + Y+ + + ++ D ++ ++V NLD ++DE L+E+FS +G + K+ P
Sbjct: 296 RETELRVRYEQN-LKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN 354
Query: 317 G--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
G K GFV FA A EA+ L+G + + + ++ + +++ +
Sbjct: 355 GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVR 402
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 129/269 (47%), Gaps = 33/269 (12%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + + ++ L F G VV V+V R+ T + GYG++ F + A R +Q
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N P+ + R+ ++ +R + IF+ +L + L +TF + + +
Sbjct: 97 LNYIPLYG--KPIRVMYSHRDPSVRRSGAGN--IFIKNLDESIDHKALHDTF-SSFGNIV 151
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KV +D +G++KGYGFV++ +E +A+ ++NG+ + + + +GP ++
Sbjct: 152 SCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQ------- 203
Query: 263 YPKASYQNSQVAQSDDDPNN---TTVFVGNLDSIVTDEHLRELFSQYGQL---VHVKIPA 316
+ D N T V+V NL TD+ L+ F +YG++ V +K
Sbjct: 204 ------------ERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE 251
Query: 317 GKR--CGFVQFADRSCAEEALRMLNGTQL 343
GK GFV F + A A+ LNG +
Sbjct: 252 GKSKGFGFVNFENADDAARAVESLNGHKF 280
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 133/290 (45%), Gaps = 36/290 (12%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FN-----GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
N G P+ R+ W+ ++ + IF+ +L + + L +TF A
Sbjct: 72 MNFDVIKGKPV-------RIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA- 121
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ + KVV D +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 122 FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
+ + N V++ N + DE L+ELF ++G + VK+
Sbjct: 180 EAELGARAKEFTN--------------VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD 225
Query: 317 ----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K GFV F A++A+ +NG +L G+ I + + +Q +
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 135/290 (46%), Gaps = 24/290 (8%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G +++ KV+ ++ + GYGF+ F ++ AER ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 144 NGTPMPNGEQNF-------RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
NG + N + F + A GA K +++ + D+ D L+E F
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKELF-G 212
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
++ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A +K
Sbjct: 213 KFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA--QKK 269
Query: 257 VSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA 316
V Q + + Q Q ++V NLD + DE LR+ FS +G + K+
Sbjct: 270 VERQTELKRKFEQMKQ--DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM 327
Query: 317 ----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 25/195 (12%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLD 291
A+ MN +P+RI Q+ P S + S V +F+ NLD
Sbjct: 68 ALDTMNFDVIKGKPVRI---------MWSQRDP--SLRKSGVG---------NIFIKNLD 107
Query: 292 SIVTDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQN 347
+ ++ L + FS +G ++ K+ K GFV F + AE A+ +NG L +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167
Query: 348 IRLSWGRSPSNKQAQ 362
+ + +S ++A+
Sbjct: 168 VFVGRFKSRKEREAE 182
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 94/195 (48%), Gaps = 30/195 (15%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGD 180
+ NG + NG+Q + G +K+ + ++V +
Sbjct: 248 VDEMNGKEL-NGKQIY------VGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 300
Query: 181 LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240
L + D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG
Sbjct: 301 LDDGIDDERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 241 CSTRPMRIGPATNKK 255
+T+P+ + A K+
Sbjct: 358 VATKPLYVALAQRKE 372
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 133/290 (45%), Gaps = 36/290 (12%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FN-----GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
N G P+ R+ W+ ++ + IF+ +L + + L +TF A
Sbjct: 72 MNFDVIKGKPV-------RIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA- 121
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ + KVV D +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 122 FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
+ + N V++ N + DE L+ELF ++G + VK+
Sbjct: 180 EAELGARAKEFTN--------------VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD 225
Query: 317 ----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K GFV F A++A+ +NG +L G+ I + + +Q +
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 135/290 (46%), Gaps = 24/290 (8%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G +++ KV+ ++ + GYGF+ F ++ AER ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 144 NGTPMPNGEQNF-------RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
NG + N + F + A GA K +++ + D+ D L+E F
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKELF-G 212
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
++ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A +K
Sbjct: 213 KFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA--QKK 269
Query: 257 VSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA 316
V Q + + Q Q ++V NLD + DE LR+ FS +G + K+
Sbjct: 270 VERQTELKRKFEQMKQ--DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM 327
Query: 317 ----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 25/195 (12%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLD 291
A+ MN +P+RI Q+ P S + S V +F+ NLD
Sbjct: 68 ALDTMNFDVIKGKPVRI---------MWSQRDP--SLRKSGVG---------NIFIKNLD 107
Query: 292 SIVTDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQN 347
+ ++ L + FS +G ++ K+ K GFV F + AE A+ +NG L +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167
Query: 348 IRLSWGRSPSNKQAQ 362
+ + +S ++A+
Sbjct: 168 VFVGRFKSRKEREAE 182
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 94/195 (48%), Gaps = 30/195 (15%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGD 180
+ NG + NG+Q + G +K+ + ++V +
Sbjct: 248 VDEMNGKEL-NGKQIY------VGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 300
Query: 181 LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240
L + D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG
Sbjct: 301 LDDGIDDERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 241 CSTRPMRIGPATNKK 255
+T+P+ + A K+
Sbjct: 358 VATKPLYVALAQRKE 372
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 146/290 (50%), Gaps = 26/290 (8%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G +++ KV+ ++ + GYGF+ F ++ A R +QT
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR--GYGFVHFETQEAANRAIQTM 158
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--------TIFVGDLAADVTDYMLQETFR 195
NG + N + F ++ S +R+ ++ +++ + D+ D L+E F
Sbjct: 159 NGMLL-NDRKVFVGHFKS-----RRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFS 212
Query: 196 ARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
A + +T KV++D TGR++G+GFV +G+ E +A++EMNG + R + +G A +K
Sbjct: 213 A-FGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRA--QK 268
Query: 256 TVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 315
+ Q + + Q Q + + ++V NLD + D+ LR+ FS YG + K+
Sbjct: 269 RIERQGELKRKFEQIKQ--ERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVM 326
Query: 316 A----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
K GFV F+ A +A+ +NG + + + ++ + ++A
Sbjct: 327 TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKA 376
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 138/287 (48%), Gaps = 26/287 (9%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + + R+ W+ G ++ + +F+ +L + + L +TF A + +
Sbjct: 70 DTMNFEVIKG--RPIRIMWSQRDPGLRKSGVGN--VFIKNLDESIDNKALYDTFSA-FGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
KVV D R GYGFV F + RA+ MNG+ + R + +G +++ +
Sbjct: 125 ILSCKVVCDEHGSR--GYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRR--ERE 180
Query: 261 QQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---- 316
+Y ++V + T V++ N + D+ LRE+FS +G + VK+
Sbjct: 181 LEY------GAKVMEF------TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTG 228
Query: 317 -GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
+ GFV + + A++A+ +NG ++ G+ I + + +Q +
Sbjct: 229 RSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGE 275
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 35/200 (17%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D T R+ GY ++ F ++ R
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGP-IMSIRVCRDIATRRSLGYAYINFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI-----GPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVF 286
A+ MN RP+RI P K V VF
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVG-------------------------NVF 102
Query: 287 VGNLDSIVTDEHLRELFSQYGQLVHVKIPA---GKR-CGFVQFADRSCAEEALRMLNGTQ 342
+ NLD + ++ L + FS +G ++ K+ G R GFV F + A A++ +NG
Sbjct: 103 IKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGML 162
Query: 343 LGGQNIRLSWGRSPSNKQAQ 362
L + + + +S ++ +
Sbjct: 163 LNDRKVFVGHFKSRRERELE 182
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 30/195 (15%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G ++VKV+ + TG+ G+GF+ + + A++
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKA 247
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGD 180
+ NG E N R+ + G +KR + ++V +
Sbjct: 248 VSEMNGK-----EVNGRMIYV--GRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKN 300
Query: 181 LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240
L + D L++ F + Y + AKV+ + G +KG+GFV F E +A+TEMNG
Sbjct: 301 LDDGIDDDRLRKEF-SPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 241 CSTRPMRIGPATNKK 255
ST+P+ + A K+
Sbjct: 358 VSTKPLYVALAQRKE 372
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 147/290 (50%), Gaps = 26/290 (8%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G++++ KV+ ++ + GYGF+ F ++ A R +QT
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSR--GYGFVHFETQEAANRAIQTM 158
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--------TIFVGDLAADVTDYMLQETFR 195
NG + N + F ++ S +R+ ++ +++ + D+ D L+E F
Sbjct: 159 NGMLL-NDRKVFVGHFKS-----RRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFS 212
Query: 196 ARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
A + +T KV++D +GR++G+GFV +G+ E +A+TEMNG + R + +G A +K
Sbjct: 213 A-FGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRA--QK 268
Query: 256 TVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 315
+ Q + + Q Q + + ++V NLD + D+ LR+ FS YG + K+
Sbjct: 269 RIERQGELKRKFEQIKQ--ERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVM 326
Query: 316 A----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
K GFV F+ A +A+ +NG + + + ++ + ++A
Sbjct: 327 TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKA 376
Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 137/287 (47%), Gaps = 26/287 (9%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L+IGDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + + R+ W+ G ++ + +F+ +L + + L +TF A +
Sbjct: 70 DTMNFEVIKG--RPIRIMWSQRDPGLRKSGVGN--VFIKNLDDSIDNKALYDTFSA-FGD 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
KVV D R GYGFV F + RA+ MNG+ + R + +G +++ +
Sbjct: 125 ILSCKVVCDEYGSR--GYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRR--ERE 180
Query: 261 QQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---- 316
+Y ++V + T V++ N + D+ L+E+FS +G + VK+
Sbjct: 181 LEY------GAKVMEF------TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSG 228
Query: 317 -GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
+ GFV + + A++A+ +NG ++ G+ + + + +Q +
Sbjct: 229 RSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGE 275
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 35/204 (17%)
Query: 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227
R + P ++++GDL DVT+ ML E F P +V D T R+ GY ++ F +
Sbjct: 5 RAEYPLASLYIGDLHPDVTEAMLYEKFSPAGP-IMSIRVCRDIATRRSLGYAYINFQQPA 63
Query: 228 EQLRAMTEMNGVFCSTRPMRI-----GPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNN 282
+ RA+ MN RP+RI P K V
Sbjct: 64 DAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVG------------------------ 99
Query: 283 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---GKR-CGFVQFADRSCAEEALRML 338
VF+ NLD + ++ L + FS +G ++ K+ G R GFV F + A A++ +
Sbjct: 100 -NVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTM 158
Query: 339 NGTQLGGQNIRLSWGRSPSNKQAQ 362
NG L + + + +S ++ +
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELE 182
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 30/195 (15%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G ++VKV+ + +G+ G+GF+ + + A++
Sbjct: 189 EFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKA 247
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGD 180
+ NG E N R+ + G +KR + ++V +
Sbjct: 248 VTEMNGK-----EVNGRMVYV--GRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKN 300
Query: 181 LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240
L + D L++ F + Y + KV+ + G +KG+GFV F E +A+TEMNG
Sbjct: 301 LDDGIDDDRLRKEF-SPYGTITSTKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 241 CSTRPMRIGPATNKK 255
ST+P+ + A K+
Sbjct: 358 VSTKPLYVALAQRKE 372
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 133/290 (45%), Gaps = 36/290 (12%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FN-----GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
N G P+ R+ W+ ++ + IF+ +L + + L +TF A
Sbjct: 72 MNFDVIKGKPV-------RIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA- 121
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ + KVV D +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 122 FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
+ + N V++ N + DE L++LF ++G + VK+
Sbjct: 180 EAELGARAKEFTN--------------VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 317 ----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K GFV F A++A+ +NG +L G+ I + + +Q +
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 95.1 bits (235), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 135/290 (46%), Gaps = 24/290 (8%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G +++ KV+ ++ + GYGF+ F ++ AER ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 144 NGTPMPNGEQNF-------RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
NG + N + F + A GA K +++ + D+ D L++ F
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKDLF-G 212
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
++ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A +K
Sbjct: 213 KFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA--QKK 269
Query: 257 VSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA 316
V Q + + Q Q ++V NLD + DE LR+ FS +G + K+
Sbjct: 270 VERQTELKRKFEQMKQ--DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM 327
Query: 317 ----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 25/195 (12%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLD 291
A+ MN +P+RI Q+ P S + S V +F+ NLD
Sbjct: 68 ALDTMNFDVIKGKPVRI---------MWSQRDP--SLRKSGVG---------NIFIKNLD 107
Query: 292 SIVTDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQN 347
+ ++ L + FS +G ++ K+ K GFV F + AE A+ +NG L +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167
Query: 348 IRLSWGRSPSNKQAQ 362
+ + +S ++A+
Sbjct: 168 VFVGRFKSRKEREAE 182
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 94/195 (48%), Gaps = 30/195 (15%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGD 180
+ NG + NG+Q + G +K+ + ++V +
Sbjct: 248 VDEMNGKEL-NGKQIY------VGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 300
Query: 181 LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240
L + D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG
Sbjct: 301 LDDGIDDERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 241 CSTRPMRIGPATNKK 255
+T+P+ + A K+
Sbjct: 358 VATKPLYVALAQRKE 372
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 133/290 (45%), Gaps = 36/290 (12%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FN-----GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
N G P+ R+ W+ ++ + IF+ +L + + L +TF A
Sbjct: 72 MNFDVIKGKPV-------RIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA- 121
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ + KVV D +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 122 FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
+ + N V++ N + DE L++LF ++G + VK+
Sbjct: 180 EAELGARAKEFTN--------------VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 317 ----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K GFV F A++A+ +NG +L G+ I + + +Q +
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 95.1 bits (235), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 135/290 (46%), Gaps = 24/290 (8%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G +++ KV+ ++ + GYGF+ F ++ AER ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 144 NGTPMPNGEQNF-------RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
NG + N + F + A GA K +++ + D+ D L++ F
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKDLF-G 212
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
++ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A +K
Sbjct: 213 KFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA--QKK 269
Query: 257 VSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA 316
V Q + + Q Q ++V NLD + DE LR+ FS +G + K+
Sbjct: 270 VERQTELKRKFEQMKQ--DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM 327
Query: 317 ----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 25/195 (12%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLD 291
A+ MN +P+RI Q+ P S + S V +F+ NLD
Sbjct: 68 ALDTMNFDVIKGKPVRI---------MWSQRDP--SLRKSGVG---------NIFIKNLD 107
Query: 292 SIVTDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQN 347
+ ++ L + FS +G ++ K+ K GFV F + AE A+ +NG L +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167
Query: 348 IRLSWGRSPSNKQAQ 362
+ + +S ++A+
Sbjct: 168 VFVGRFKSRKEREAE 182
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 94/195 (48%), Gaps = 30/195 (15%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGD 180
+ NG + NG+Q + G +K+ + ++V +
Sbjct: 248 VDEMNGKEL-NGKQIY------VGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 300
Query: 181 LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240
L + D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG
Sbjct: 301 LDDGIDDERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 241 CSTRPMRIGPATNKK 255
+T+P+ + A K+
Sbjct: 358 VATKPLYVALAQRKE 372
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 133/290 (45%), Gaps = 36/290 (12%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FN-----GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
N G P+ R+ W+ ++ + IF+ +L + + L +TF A
Sbjct: 72 MNFDVIKGRPV-------RIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA- 121
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ + KVV D +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 122 FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKER 179
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
+ + N V++ N + DE L+E+F +YG + VK+
Sbjct: 180 EAELGARAKEFTN--------------VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD 225
Query: 317 ----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K GFV F A++A+ +NG + G+++ + + +Q +
Sbjct: 226 DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTE 275
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 132/290 (45%), Gaps = 24/290 (8%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G +++ KV+ ++ + GYGF+ F ++ AER +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIDKM 158
Query: 144 NGTPMPNGEQNF-------RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
NG + N + F + A GA K +++ + D+ D L+E F
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTN----VYIKNFGDDMNDERLKEMF-G 212
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
+Y KV+ D G++KG+GFV F + +A+ EMNG + + M +G A +K
Sbjct: 213 KYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRA--QKK 269
Query: 257 VSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA 316
V Q + + Q Q ++V NLD + DE LR+ F +G + K+
Sbjct: 270 VERQTELKRKFEQMKQ--DRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMM 327
Query: 317 ----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 25/195 (12%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLD 291
A+ MN RP+RI Q+ P S + S V +F+ NLD
Sbjct: 68 ALDTMNFDVIKGRPVRI---------MWSQRDP--SLRKSGVG---------NIFIKNLD 107
Query: 292 SIVTDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQN 347
+ ++ L + FS +G ++ K+ K GFV F + AE A+ +NG L +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRK 167
Query: 348 IRLSWGRSPSNKQAQ 362
+ + +S ++A+
Sbjct: 168 VFVGRFKSRKEREAE 182
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 30/195 (15%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + M++ L F G ++VKV+ + G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGD 180
+ NG M NG+ F G +K+ + ++V +
Sbjct: 248 VDEMNGKDM-NGKSMF------VGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 300
Query: 181 LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240
L + D L++ F + + AKV+++ GR+KG+GFV F E +A+TEMNG
Sbjct: 301 LDDGIDDERLRKEFLP-FGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 241 CSTRPMRIGPATNKK 255
+T+P+ + A K+
Sbjct: 358 VATKPLYVALAQRKE 372
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 132/290 (45%), Gaps = 36/290 (12%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FN-----GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
N G P+ R+ W+ ++ + IF+ +L + + L +TF A
Sbjct: 72 MNFDVIKGKPV-------RIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA- 121
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ + KVV D +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 122 FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
+ + N V++ N + DE L++LF ++G + VK+
Sbjct: 180 EAELGARAKEFTN--------------VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 317 ----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K GFV F A++A+ +NG +L G+ I + + +Q +
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 135/290 (46%), Gaps = 24/290 (8%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G +++ KV+ ++ + GYGF+ F ++ AER ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEKM 158
Query: 144 NGTPMPNGEQNF-------RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
NG + N + F + A GA K +++ + D+ D L++ F
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKDLF-G 212
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
++ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A +K
Sbjct: 213 KFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA--QKK 269
Query: 257 VSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA 316
V Q + + Q Q ++V NLD + DE LR+ FS +G + K+
Sbjct: 270 VERQTELKRKFEQMKQ--DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM 327
Query: 317 ----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 25/195 (12%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL D T+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDATEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLD 291
A+ MN +P+RI Q+ P S + S V +F+ NLD
Sbjct: 68 ALDTMNFDVIKGKPVRI---------MWSQRDP--SLRKSGVG---------NIFIKNLD 107
Query: 292 SIVTDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQN 347
+ ++ L + FS +G ++ K+ K GFV F + AE A+ +NG L +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167
Query: 348 IRLSWGRSPSNKQAQ 362
+ + +S ++A+
Sbjct: 168 VFVGRFKSRKEREAE 182
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 94/195 (48%), Gaps = 30/195 (15%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGD 180
+ NG + NG+Q + G +K+ + ++V +
Sbjct: 248 VDEMNGKEL-NGKQIY------VGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 300
Query: 181 LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240
L + D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG
Sbjct: 301 LDDGIDDERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 241 CSTRPMRIGPATNKK 255
+T+P+ + A K+
Sbjct: 358 VATKPLYVALAQRKE 372
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 139/285 (48%), Gaps = 26/285 (9%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V+++++ R++ T + GY ++ F+ A A++ L T
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + ++ RL W+ A +R + +F+ +L + + L E F A +
Sbjct: 71 MNFDIIKG--KSIRLMWSQRDAYLRRSGIGN--VFIKNLDKSIDNKTLYEHFSA-FGKIL 125
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
+KV+ D +KGY FV F ++S RA+ EMNG + +G N+K + +
Sbjct: 126 SSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELR 183
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR 319
+ + T V++ N + DE L+++FS+YG+ + VK+ +GK
Sbjct: 184 SKASEF--------------TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKS 229
Query: 320 --CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV F A++A+ +NG + GQ I + + +QA+
Sbjct: 230 KGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 274
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 140/301 (46%), Gaps = 33/301 (10%)
Query: 55 MWATQAAAPQAAGVAVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVI 114
MW+ + A + +G+ ++I +L +D L F+ G++++ KV+
Sbjct: 84 MWSQRDAYLRRSGIG-------------NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 130
Query: 115 RNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTP 172
+ Q + GY F+ F +++ A+R ++ NG + G + F R E R
Sbjct: 131 SDDQGSK--GYAFVHFQNQSAADRAIEEMNG-KLLKGCKVFVGRFKNRKDREAELRSKAS 187
Query: 173 DHT-IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
+ T +++ + D+ D L++ F ++Y T KV+ D +G++KG+GFV F +
Sbjct: 188 EFTNVYIKNFGGDMDDERLKDVF-SKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKK 245
Query: 232 AMTEMNGVFCSTRPMRIGPATNK--KTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGN 289
A+ EMNG + + + +G A K + +Q + + + + Q +++ N
Sbjct: 246 AVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQG------VKLYIKN 299
Query: 290 LDSIVTDEHLRELFSQYGQLVHVKIP----AGKRCGFVQFADRSCAEEALRMLNGTQLGG 345
LD + DE LR FS +G + VK+ K G + F+ A +A+ +NG LG
Sbjct: 300 LDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGS 359
Query: 346 Q 346
+
Sbjct: 360 K 360
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 92/200 (46%), Gaps = 30/200 (15%)
Query: 71 PPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEF 130
+ + + E ++I + MD+ L F+ G+ ++VKV+ + +G+ +G+GF+ F
Sbjct: 179 EAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSF 237
Query: 131 ISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHT--------------- 175
S A++ ++ NG + NG+ F G +K+ +
Sbjct: 238 DSHEAAKKAVEEMNGRDI-NGQLIF------VGRAQKKVERQAELKQMFEQLKRERIRGC 290
Query: 176 ----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
+++ +L + D L+ F + + S KV+ + G++KG+G + F + +
Sbjct: 291 QGVKLYIKNLDDTIDDEKLRNEFSS-FGSISRVKVMQEE--GQSKGFGLICFSSPEDATK 347
Query: 232 AMTEMNGVFCSTRPMRIGPA 251
AMTEMNG ++P+ I A
Sbjct: 348 AMTEMNGRILGSKPLSIALA 367
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 128/271 (47%), Gaps = 25/271 (9%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++G+L + E L F+ G + +++V R+ T GY ++ + ++ +Q
Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQE 110
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + NG + R+ W+ ++ + + IF+ +L + + L ETF + +
Sbjct: 111 LNYAEI-NG-RPCRIMWSERDPAIRKKGSGN--IFIKNLHPAIDNKALHETF-STFGEVL 165
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KV +D G ++G+GFV F +ES+ A+ +NG+ + + + KK + +
Sbjct: 166 SCKVALDE-NGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLE 224
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG----- 317
KA++ T ++V N+D TDE +LFSQYG++V +
Sbjct: 225 EAKANF--------------TNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKP 270
Query: 318 KRCGFVQFADRSCAEEALRMLNGTQLGGQNI 348
K GFV F D + A +A+ LNG + Q +
Sbjct: 271 KGFGFVNFVDHNAAAKAVEELNGKEFKSQAL 301
Score = 88.2 bits (217), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 134/287 (46%), Gaps = 14/287 (4%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D L+ F+ GEV++ KV + + G G+GF+ F + A+ ++
Sbjct: 139 NIFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGFGFVHFKEESDAKDAIEA 197
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--TIFVGDLAADVTDYMLQETFRARYPS 200
NG M E ++ K ++ + I+V ++ + TD ++ F ++Y
Sbjct: 198 VNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLF-SQYGE 256
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
A + D G+ KG+GFV F D + +A+ E+NG ++ + +G A K + +
Sbjct: 257 IVSAALEKD-AEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEE 315
Query: 261 QQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---- 316
+ Y+ ++A+ +F+ NLD + DE L+E F+ YG + ++
Sbjct: 316 LKKQYEQYRLEKLAKF----QGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEG 371
Query: 317 -GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K GFV F+ A +A+ N + G+ + ++ + +++Q
Sbjct: 372 NSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDVRRSQ 418
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 145/313 (46%), Gaps = 32/313 (10%)
Query: 52 PPAMWATQAAAPQAAGVA----VPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGE 107
P A A +AP+ V P QP +L++G+L + E L F+ G+
Sbjct: 18 PEATNAAATSAPEVTAVESSSPTSPNNNNQPHSA-SLYVGELDPSVTEAMLYELFSSIGQ 76
Query: 108 VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEK 167
V +++V R+ T + GY ++ + + A ER L+ N T + + R+ W+ +
Sbjct: 77 VASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALR 134
Query: 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227
+ T +F+ +L + + + L +TF A + + KV D G +KGYGFV +
Sbjct: 135 K--TGQGNVFIKNLDSAIDNKALHDTF-AAFGNILSCKVAQDEF-GNSKGYGFVHYETAE 190
Query: 228 EQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFV 287
A+ +NG+ + + + +G +KK + KA++ T +++
Sbjct: 191 AANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANF--------------TNIYI 236
Query: 288 GNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAEEALRMLNGTQ 342
N+D VT+E R++F Q+G++ + P GK GFV ++ A+ A+ ++ +
Sbjct: 237 KNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKE 296
Query: 343 LGGQNIRLSWGRS 355
+ Q +L GR+
Sbjct: 297 VKTQ--KLYVGRA 307
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 109/236 (46%), Gaps = 13/236 (5%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D L+ FA G +++ KV ++ + G +GYGF+ + + A ++
Sbjct: 140 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKH 198
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--TIFVGDLAADVTDYMLQETFRARYPS 200
NG + + + + + K D+ + I++ ++ DVT+ ++ F ++
Sbjct: 199 VNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFE-QFGE 257
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK--KTVS 258
A + D G+++G+GFV + A+ EM+ T+ + +G A K +
Sbjct: 258 ITSATLSRDP-EGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEE 316
Query: 259 GQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI 314
++QY A + + Q ++V NL V DE LRELF YG + K+
Sbjct: 317 LRKQYEAARLEKASKYQG------VNLYVKNLTDDVDDEKLRELFGPYGTITSAKV 366
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/243 (18%), Positives = 84/243 (34%), Gaps = 68/243 (27%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I ++ + E F GE+ + + R+ + G+ G+GF+ + + A+ +
Sbjct: 233 NIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPE-GKSRGFGFVNYSTHESAQAAVDE 291
Query: 143 FNGTPMPN-------------GEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYM 189
+ + E+ R + + EK ++V +L DV D
Sbjct: 292 MHDKEVKTQKLYVGRAQKKHEREEELRKQYEA-ARLEKASKYQGVNLYVKNLTDDVDDEK 350
Query: 190 LQETFRARYPSTKGAKVVID---------------------------------------- 209
L+E F Y + AKV+ D
Sbjct: 351 LRELF-GPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPKESD 409
Query: 210 ------------RLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+L G++KG+GFV F E +A+TEMN + +P+ + A K
Sbjct: 410 EEKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 469
Query: 258 SGQ 260
Q
Sbjct: 470 RSQ 472
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 133/278 (47%), Gaps = 27/278 (9%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++G+L + E L F G V +++V R+ T + GY ++ F + E+ L
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N T + + R+ W+ ++ T + +F+ +L + + L +TF A +
Sbjct: 141 LNYTLIKG--RPCRIMWSQRDPSLRKMGTGN--VFIKNLDPAIDNKALHDTFSA-FGKIL 195
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KV +D L G KGYGFV F A+ +NG+ + + + +G +++ + +
Sbjct: 196 SCKVAVDEL-GNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVE 254
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR--- 319
KA++ N V++ NLD+ +T++ +LF Q+G++ + + +
Sbjct: 255 ALKANFTN--------------VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKP 300
Query: 320 --CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355
GFV +A+ CA++A+ LN + G+ +L GR+
Sbjct: 301 RGFGFVNYANHECAQKAVDELNDKEYKGK--KLYVGRA 336
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 26/200 (13%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
+++VG+L VT+ ML E F + P +V D +T R+ GY +V F + + +A+
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGP-VASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV 294
E+N RP RI SQ S VF+ NLD +
Sbjct: 140 ELNYTLIKGRPCRI--------------------MWSQRDPSLRKMGTGNVFIKNLDPAI 179
Query: 295 TDEHLRELFSQYGQLVHVKIPA-----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 349
++ L + FS +G+++ K+ K GFV F A A+ +NG L + +
Sbjct: 180 DNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVY 239
Query: 350 LSWGRSPSNKQAQPDPNQWN 369
+ S +Q++ + + N
Sbjct: 240 VGHHVSRRERQSKVEALKAN 259
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 89/192 (46%), Gaps = 17/192 (8%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L + E + F GE+ ++ ++++ Q + G+GF+ + + A++ +
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDEL 321
Query: 144 N-----GTPMPNG--------EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYML 190
N G + G E+ R + EK + +F+ +L +V D L
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKL-EKMNKYQGVNLFIKNLQDEVDDERL 380
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+ F A + + AK++ D G++KG+GFV + E +A+TEMN + +P+ +
Sbjct: 381 KAEFSA-FGTITSAKIMTDE-QGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVAL 438
Query: 251 ATNKKTVSGQQQ 262
A K+ Q +
Sbjct: 439 AQRKEVRRSQLE 450
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 131/290 (45%), Gaps = 36/290 (12%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FN-----GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
N G P+ R+ W+ ++ + IF+ +L + + L +TF A
Sbjct: 72 MNFDVIKGKPV-------RIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA- 121
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ + KVV D +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 122 FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKER 179
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
+ + N V++ N + DE L+E F QYG + VK+
Sbjct: 180 EAELGARAKEFTN--------------VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD 225
Query: 317 ----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
+ GFV F A++A+ +NG L G+ I + + +Q +
Sbjct: 226 DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTE 275
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 134/290 (46%), Gaps = 24/290 (8%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G +++ KV+ ++ + GYGF+ F ++ AER +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIDKM 158
Query: 144 NGTPMPNGEQNF-------RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
NG + N + F + A GA K +++ + D+ D L+E F
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKEWF-G 212
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
+Y + KV+ D G+++G+GFV F + +A+ +MNG + + + +G A +K
Sbjct: 213 QYGAALSVKVMTDD-HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRA--QKK 269
Query: 257 VSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA 316
V Q + + Q Q ++V NLD + DE LR+ F+ +G + K+
Sbjct: 270 VERQTELKRKFEQMKQ--DRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMM 327
Query: 317 ----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 25/195 (12%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLD 291
A+ MN +P+RI Q+ P S + S V +F+ NLD
Sbjct: 68 ALDTMNFDVIKGKPVRI---------MWSQRDP--SLRKSGVG---------NIFIKNLD 107
Query: 292 SIVTDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQN 347
+ ++ L + FS +G ++ K+ K GFV F + AE A+ +NG L +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRK 167
Query: 348 IRLSWGRSPSNKQAQ 362
+ + +S ++A+
Sbjct: 168 VFVGRFKSRKEREAE 182
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 30/195 (15%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + G+ G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGD 180
+ NG + NG+ F G +K+ + ++V +
Sbjct: 248 VDDMNGKDL-NGKAIF------VGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 300
Query: 181 LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240
L + D L++ F + S AKV+++ GR+KG+GFV F E +A+TEMNG
Sbjct: 301 LDDGIDDERLRKEFTP-FGSITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 241 CSTRPMRIGPATNKK 255
+T+P+ + A K+
Sbjct: 358 VATKPLYVALAQRKE 372
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 133/278 (47%), Gaps = 27/278 (9%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++G+L + E L F+ G+V +++V R+ T + GY ++ + + A ER L+
Sbjct: 50 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N T + + R+ W+ ++ T +F+ +L + + + L +TF A + +
Sbjct: 110 LNYTLIKG--KPCRIMWSQRDPALRK--TGQGNVFIKNLDSAIDNKALHDTF-AAFGNIL 164
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KV D G +KGYGFV + A+ +NG+ + + + +G +KK + +
Sbjct: 165 SCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE 223
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP-----AG 317
KA++ T V++ N+D VT+E RELF ++G++ +
Sbjct: 224 EMKANF--------------TNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKS 269
Query: 318 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355
+ GFV F+ A+ A+ +N ++ Q +L GR+
Sbjct: 270 RGFGFVNFSTHESAQAAVDEMNEKEIRTQ--KLYVGRA 305
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 25/242 (10%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D L+ FA G +++ KV ++ + G +GYGF+ + + A ++
Sbjct: 138 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKH 196
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--------TIFVGDLAADVTDYMLQETF 194
NG + N ++ F + S K+D +++ ++ DVT+ +E F
Sbjct: 197 VNGMLL-NDKKVFVGHHIS-----KKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELF 250
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
++ A + D+ G+++G+GFV F A+ EMN T+ + +G A K
Sbjct: 251 E-KFGEITSATLSRDQ-EGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKK 308
Query: 255 --KTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 312
+ ++QY A + + Q ++V NL V DE LRELF YG +
Sbjct: 309 HEREEELRKQYEAARLEKASKYQG------VNLYVKNLTDDVDDEKLRELFGPYGTITSA 362
Query: 313 KI 314
K+
Sbjct: 363 KV 364
Score = 35.8 bits (81), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
G++KG+GFV F E +A+TEMN + +P+ + A K Q
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 477
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 133/278 (47%), Gaps = 27/278 (9%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++G+L + E L F+ G+V +++V R+ T + GY ++ + + A ER L+
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N T + + R+ W+ ++ T +F+ +L + + + L +TF A + +
Sbjct: 115 LNYTLIKG--KPCRIMWSQRDPALRK--TGQGNVFIKNLDSAIDNKALHDTF-AAFGNIL 169
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KV D G +KGYGFV + A+ +NG+ + + + +G +KK + +
Sbjct: 170 SCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE 228
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP-----AG 317
KA++ T V++ NLDS + D+ R++F ++G++ +
Sbjct: 229 EMKANF--------------TNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKS 274
Query: 318 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355
+ GFV F+ A+ A+ +N ++ Q +L GR+
Sbjct: 275 RGFGFVNFSTHESAQAAVEEMNDKEIRSQ--KLYVGRA 310
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 111/242 (45%), Gaps = 25/242 (10%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D L+ FA G +++ KV ++ + G +GYGF+ + + A ++
Sbjct: 143 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKH 201
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--------TIFVGDLAADVTDYMLQETF 194
NG + N ++ F + S K+D +++ +L +++ D ++ F
Sbjct: 202 VNGMLL-NDKKVFVGHHIS-----KKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMF 255
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
++ A + D+ G+++G+GFV F A+ EMN ++ + +G A K
Sbjct: 256 E-KFGEITSATLSRDQ-EGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKK 313
Query: 255 --KTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 312
+ ++QY A + + Q ++V NL + DE LRELF YG +
Sbjct: 314 HEREEELRKQYEAARLEKASKYQG------VNLYVKNLTDDIDDEKLRELFGPYGTITSA 367
Query: 313 KI 314
K+
Sbjct: 368 KV 369
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/252 (18%), Positives = 86/252 (34%), Gaps = 82/252 (32%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D+ F GE+ + + R+ Q G+ G+GF+ F + A+ ++
Sbjct: 236 NVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRD-QEGKSRGFGFVNFSTHESAQAAVEE 294
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGDLAA 183
N ++ R G +K+ + + ++V +L
Sbjct: 295 MN-------DKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 347
Query: 184 DVTDYMLQETF------------------RARYPSTKGAKVVIDRLT------------- 212
D+ D L+E F R + P + G + D+
Sbjct: 348 DIDDEKLRELFGPYGTITSAKVMRDTNVERDQSPDSAGKEKEADKENDKEATPEAEKAEK 407
Query: 213 ------------------------GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
G++KG+GFV F E +A+TEMN + +P+ +
Sbjct: 408 AEEKPSESSEEKDKEAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYV 467
Query: 249 GPATNKKTVSGQ 260
A K Q
Sbjct: 468 ALAQRKDVRRSQ 479
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 134/278 (48%), Gaps = 27/278 (9%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++G+L + E L F+ G+V +++V R+ T + GY ++ + + A ER L+
Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N T + + R+ W+ ++ T +F+ +L A + + L +TF A + +
Sbjct: 109 LNYTLIKG--KPCRIMWSQRDPALRK--TGQGNVFIKNLDAAIDNKALHDTF-AAFGNIL 163
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KV D G +KGYGFV + A+ +NG+ + + + +G +KK + +
Sbjct: 164 SCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFE 222
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP-----AG 317
KA++ T V++ NLD +++E R++F ++G++ +
Sbjct: 223 EMKANF--------------TNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKS 268
Query: 318 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355
+ GFV ++ A+ A+ +N ++ GQ +L GR+
Sbjct: 269 RGFGFVNYSTHDSAQAAVDEMNDKEVKGQ--KLYVGRA 304
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 111/242 (45%), Gaps = 25/242 (10%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D L+ FA G +++ KV ++ + G +GYGF+ + + A ++
Sbjct: 137 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKH 195
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--------TIFVGDLAADVTDYMLQETF 194
NG + N ++ F + S K+D +++ +L ++++ ++ F
Sbjct: 196 VNGMLL-NDKKVFVGHHIS-----KKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMF 249
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
++ A + D+ G+++G+GFV + A+ EMN + + +G A K
Sbjct: 250 E-KFGEITSATLSRDQ-EGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKK 307
Query: 255 --KTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 312
+ ++QY A + + Q ++V NL + DE LRE+F+ YG +
Sbjct: 308 HEREEELRKQYEAARLEKASKYQG------VNLYVKNLTDDIDDEKLREMFAPYGTITSA 361
Query: 313 KI 314
K+
Sbjct: 362 KV 363
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/241 (19%), Positives = 85/241 (35%), Gaps = 66/241 (27%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L + E F GE+ + + R+ Q G+ G+GF+ + + A+ +
Sbjct: 230 NVYIKNLDQEISEEEFRQMFEKFGEITSATLSRD-QEGKSRGFGFVNYSTHDSAQAAVDE 288
Query: 143 FNGTPMP-------------NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYM 189
N + E+ R + + EK ++V +L D+ D
Sbjct: 289 MNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARL-EKASKYQGVNLYVKNLTDDIDDEK 347
Query: 190 LQETFRARYPSTKGAKVVID---------------------------------------- 209
L+E F A Y + AKV+ D
Sbjct: 348 LREMF-APYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDD 406
Query: 210 ----------RLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSG 259
++ G++KG+GFV F E +A+TEMN + +P+ + A K
Sbjct: 407 QDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDVRRS 466
Query: 260 Q 260
Q
Sbjct: 467 Q 467
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,782,254
Number of Sequences: 539616
Number of extensions: 8574792
Number of successful extensions: 92912
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 1515
Number of HSP's that attempted gapping in prelim test: 50905
Number of HSP's gapped (non-prelim): 23273
length of query: 413
length of database: 191,569,459
effective HSP length: 120
effective length of query: 293
effective length of database: 126,815,539
effective search space: 37156952927
effective search space used: 37156952927
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)