Query 015091
Match_columns 413
No_of_seqs 382 out of 3590
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 03:00:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015091.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015091hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4.9E-46 1.1E-50 348.3 32.3 272 80-358 2-351 (352)
2 TIGR01648 hnRNP-R-Q heterogene 100.0 3.8E-45 8.2E-50 348.3 34.7 249 79-359 56-310 (578)
3 KOG0117 Heterogeneous nuclear 100.0 2.8E-45 6E-50 322.4 29.0 251 79-360 81-335 (506)
4 KOG0148 Apoptosis-promoting RN 100.0 1.7E-44 3.6E-49 297.7 23.8 237 78-358 3-240 (321)
5 TIGR01628 PABP-1234 polyadenyl 100.0 7.9E-42 1.7E-46 337.8 33.8 270 80-357 87-365 (562)
6 TIGR01628 PABP-1234 polyadenyl 100.0 1.5E-41 3.3E-46 335.8 30.0 252 83-357 2-262 (562)
7 KOG0145 RNA-binding protein EL 100.0 3.6E-41 7.8E-46 276.2 26.7 272 78-356 38-358 (360)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.2E-38 2.6E-43 307.1 32.5 265 80-357 1-352 (481)
9 TIGR01622 SF-CC1 splicing fact 100.0 1.1E-38 2.3E-43 308.8 31.2 277 77-355 85-447 (457)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.9E-38 8.4E-43 303.6 32.8 267 80-356 95-480 (481)
11 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.2E-37 4.8E-42 303.8 32.0 273 75-355 169-501 (509)
12 TIGR01645 half-pint poly-U bin 100.0 1.6E-36 3.4E-41 289.6 30.0 174 79-253 105-283 (612)
13 KOG0144 RNA-binding protein CU 100.0 5.8E-37 1.2E-41 268.7 22.0 277 77-358 30-506 (510)
14 KOG0127 Nucleolar protein fibr 100.0 3.6E-35 7.9E-40 264.5 24.8 273 82-356 6-378 (678)
15 TIGR01659 sex-lethal sex-letha 100.0 2.4E-34 5.3E-39 261.8 26.6 170 169-361 103-280 (346)
16 TIGR01659 sex-lethal sex-letha 100.0 2.3E-32 4.9E-37 248.9 20.6 172 77-255 103-276 (346)
17 KOG0123 Polyadenylate-binding 100.0 9.4E-32 2E-36 245.9 21.9 239 82-355 2-245 (369)
18 KOG0123 Polyadenylate-binding 100.0 2.3E-31 5E-36 243.4 18.6 264 83-355 78-348 (369)
19 KOG0148 Apoptosis-promoting RN 100.0 4.9E-30 1.1E-34 212.2 15.4 165 81-254 62-238 (321)
20 KOG0124 Polypyrimidine tract-b 100.0 7.6E-30 1.7E-34 219.4 16.8 269 81-352 113-531 (544)
21 TIGR01645 half-pint poly-U bin 100.0 2.3E-29 5E-34 240.6 21.9 176 172-359 106-287 (612)
22 KOG0147 Transcriptional coacti 100.0 1.3E-29 2.8E-34 230.1 15.7 280 76-357 174-529 (549)
23 TIGR01648 hnRNP-R-Q heterogene 100.0 2.9E-28 6.2E-33 233.0 24.7 221 79-308 136-367 (578)
24 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2E-28 4.4E-33 229.3 21.8 175 80-255 88-350 (352)
25 KOG0144 RNA-binding protein CU 100.0 7.4E-29 1.6E-33 218.0 14.2 173 168-362 29-212 (510)
26 KOG0110 RNA-binding protein (R 100.0 2.3E-27 4.9E-32 221.3 17.8 258 78-357 382-694 (725)
27 TIGR01622 SF-CC1 splicing fact 99.9 1.1E-26 2.4E-31 225.0 21.2 174 170-355 86-265 (457)
28 KOG4212 RNA-binding protein hn 99.9 1.9E-25 4.1E-30 196.7 23.6 166 80-248 43-288 (608)
29 KOG0145 RNA-binding protein EL 99.9 4.6E-26 9.9E-31 187.6 13.2 168 170-360 38-213 (360)
30 KOG0131 Splicing factor 3b, su 99.9 6.3E-26 1.4E-30 177.2 12.3 174 78-257 6-180 (203)
31 KOG4211 Splicing factor hnRNP- 99.9 1.2E-23 2.5E-28 189.0 26.5 268 78-354 7-356 (510)
32 KOG0117 Heterogeneous nuclear 99.9 1E-24 2.3E-29 192.9 19.0 194 129-358 40-250 (506)
33 KOG0127 Nucleolar protein fibr 99.9 3.8E-24 8.2E-29 193.7 17.1 183 174-357 6-197 (678)
34 KOG0131 Splicing factor 3b, su 99.9 4.2E-24 9.1E-29 167.0 12.5 168 170-359 6-180 (203)
35 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.7E-23 7.9E-28 203.3 21.7 176 78-254 292-502 (509)
36 KOG0109 RNA-binding protein LA 99.9 3.9E-24 8.6E-29 179.1 10.2 148 175-357 4-151 (346)
37 KOG4205 RNA-binding protein mu 99.9 2E-23 4.2E-28 184.2 14.8 171 172-361 5-181 (311)
38 KOG1190 Polypyrimidine tract-b 99.9 5E-22 1.1E-26 174.0 22.5 266 79-355 148-490 (492)
39 KOG0109 RNA-binding protein LA 99.9 8.4E-24 1.8E-28 177.2 9.3 150 82-256 3-152 (346)
40 KOG4205 RNA-binding protein mu 99.9 5.9E-23 1.3E-27 181.1 14.0 178 79-259 4-181 (311)
41 KOG0120 Splicing factor U2AF, 99.9 1.3E-21 2.9E-26 180.8 17.2 273 76-356 170-492 (500)
42 KOG0124 Polypyrimidine tract-b 99.9 1.3E-22 2.8E-27 175.0 9.3 174 174-359 114-293 (544)
43 KOG0146 RNA-binding protein ET 99.9 1.3E-20 2.9E-25 156.1 13.4 175 79-255 17-366 (371)
44 KOG0146 RNA-binding protein ET 99.8 4E-20 8.7E-25 153.2 11.3 186 171-358 17-367 (371)
45 KOG0110 RNA-binding protein (R 99.8 3.5E-20 7.5E-25 173.7 12.1 172 83-255 517-694 (725)
46 KOG1190 Polypyrimidine tract-b 99.8 2.1E-18 4.5E-23 151.5 19.0 269 78-357 25-374 (492)
47 KOG0105 Alternative splicing f 99.8 4.9E-18 1.1E-22 133.3 18.5 170 171-345 4-177 (241)
48 KOG4206 Spliceosomal protein s 99.8 5.6E-18 1.2E-22 138.6 16.8 179 172-354 8-220 (221)
49 PLN03134 glycine-rich RNA-bind 99.8 5E-18 1.1E-22 135.5 15.8 80 279-358 31-116 (144)
50 KOG0147 Transcriptional coacti 99.8 4.4E-19 9.5E-24 161.9 7.3 178 169-356 175-358 (549)
51 KOG4206 Spliceosomal protein s 99.8 3.2E-17 6.9E-22 134.2 16.0 165 78-251 6-219 (221)
52 KOG4211 Splicing factor hnRNP- 99.8 4E-17 8.7E-22 147.3 17.9 167 170-353 7-179 (510)
53 KOG1456 Heterogeneous nuclear 99.8 3.8E-16 8.2E-21 135.8 22.5 269 77-357 27-364 (494)
54 KOG1456 Heterogeneous nuclear 99.8 8.8E-16 1.9E-20 133.5 24.4 266 79-355 118-490 (494)
55 KOG0105 Alternative splicing f 99.7 4.2E-17 9.1E-22 128.1 13.3 153 78-241 3-175 (241)
56 KOG1457 RNA binding protein (c 99.7 2.2E-16 4.8E-21 127.8 15.4 161 76-241 29-273 (284)
57 KOG0106 Alternative splicing f 99.7 5.9E-17 1.3E-21 134.2 8.5 165 175-353 3-168 (216)
58 KOG1365 RNA-binding protein Fu 99.7 2.8E-16 6E-21 137.0 13.0 272 77-354 56-360 (508)
59 KOG4212 RNA-binding protein hn 99.7 8.9E-16 1.9E-20 136.1 15.9 182 173-355 44-293 (608)
60 KOG1457 RNA binding protein (c 99.7 1.2E-15 2.6E-20 123.7 13.1 173 170-343 31-273 (284)
61 PLN03134 glycine-rich RNA-bind 99.7 8E-16 1.7E-20 122.8 11.2 85 170-255 31-115 (144)
62 KOG1548 Transcription elongati 99.6 4.2E-14 9.1E-19 122.3 17.8 185 170-356 131-352 (382)
63 KOG0106 Alternative splicing f 99.6 1.7E-15 3.7E-20 125.6 6.9 151 82-251 2-168 (216)
64 KOG0125 Ataxin 2-binding prote 99.6 4.1E-15 9E-20 127.4 9.0 78 279-356 93-174 (376)
65 KOG0122 Translation initiation 99.6 6E-15 1.3E-19 121.5 9.1 84 78-163 186-269 (270)
66 KOG0149 Predicted RNA-binding 99.6 3.5E-15 7.5E-20 122.5 7.5 82 78-160 9-90 (247)
67 KOG0121 Nuclear cap-binding pr 99.6 9.7E-15 2.1E-19 107.8 8.3 74 281-354 35-114 (153)
68 KOG1548 Transcription elongati 99.6 1.5E-13 3.3E-18 118.8 16.8 169 78-254 131-352 (382)
69 KOG0107 Alternative splicing f 99.6 2.3E-14 4.9E-19 112.1 10.5 78 281-358 9-87 (195)
70 PF00076 RRM_1: RNA recognitio 99.6 1.4E-14 2.9E-19 101.8 8.4 65 285-349 1-70 (70)
71 PF00076 RRM_1: RNA recognitio 99.5 1.9E-14 4.2E-19 101.0 7.6 67 84-151 1-67 (70)
72 KOG0149 Predicted RNA-binding 99.5 1.4E-14 3.1E-19 118.9 7.4 81 171-253 10-90 (247)
73 KOG4307 RNA binding protein RB 99.5 1.5E-12 3.2E-17 122.2 21.1 170 78-251 308-511 (944)
74 PLN03120 nucleic acid binding 99.5 6.4E-14 1.4E-18 119.5 10.2 73 282-355 4-79 (260)
75 KOG4207 Predicted splicing fac 99.5 8.3E-14 1.8E-18 111.7 9.1 76 280-355 11-92 (256)
76 KOG0107 Alternative splicing f 99.5 6.5E-14 1.4E-18 109.5 7.0 75 79-158 8-82 (195)
77 PF14259 RRM_6: RNA recognitio 99.5 1.8E-13 4E-18 95.9 8.6 65 285-349 1-70 (70)
78 KOG0114 Predicted RNA-binding 99.5 2.3E-13 5E-18 96.6 8.8 75 280-354 16-93 (124)
79 PF14259 RRM_6: RNA recognitio 99.5 1.2E-13 2.6E-18 96.8 7.4 67 84-151 1-67 (70)
80 KOG0121 Nuclear cap-binding pr 99.5 1.1E-13 2.3E-18 102.4 7.2 83 171-254 34-116 (153)
81 KOG4207 Predicted splicing fac 99.5 5.5E-14 1.2E-18 112.7 6.0 82 77-158 9-90 (256)
82 KOG0122 Translation initiation 99.5 2.3E-13 5.1E-18 112.2 8.9 86 168-254 184-269 (270)
83 COG0724 RNA-binding proteins ( 99.5 7.6E-13 1.7E-17 120.4 13.2 152 81-233 115-284 (306)
84 KOG0126 Predicted RNA-binding 99.4 8.9E-15 1.9E-19 114.8 -0.5 87 170-257 32-118 (219)
85 COG0724 RNA-binding proteins ( 99.4 2.1E-12 4.6E-17 117.5 15.1 144 173-317 115-260 (306)
86 KOG0125 Ataxin 2-binding prote 99.4 1.2E-12 2.6E-17 112.6 12.1 84 77-164 92-175 (376)
87 KOG0113 U1 small nuclear ribon 99.4 3.2E-13 7E-18 114.5 8.2 87 167-254 95-181 (335)
88 PLN03213 repressor of silencin 99.4 6.6E-13 1.4E-17 119.9 10.1 76 280-355 8-87 (759)
89 PLN03120 nucleic acid binding 99.4 8.4E-13 1.8E-17 112.7 9.1 73 81-157 4-76 (260)
90 PF13893 RRM_5: RNA recognitio 99.4 1.7E-12 3.7E-17 86.3 8.7 55 299-353 1-56 (56)
91 PLN03121 nucleic acid binding 99.4 1.5E-12 3.3E-17 109.2 10.1 73 281-354 4-79 (243)
92 smart00362 RRM_2 RNA recogniti 99.4 2.9E-12 6.3E-17 90.1 9.4 68 284-351 1-72 (72)
93 KOG0226 RNA-binding proteins [ 99.4 6.3E-12 1.4E-16 104.4 12.3 169 82-254 97-270 (290)
94 KOG0126 Predicted RNA-binding 99.4 5.2E-14 1.1E-18 110.6 0.1 81 76-158 30-110 (219)
95 KOG0113 U1 small nuclear ribon 99.4 5.6E-12 1.2E-16 107.1 12.2 83 280-362 99-187 (335)
96 KOG0114 Predicted RNA-binding 99.4 2.3E-12 4.9E-17 91.6 7.9 73 77-152 14-86 (124)
97 KOG4660 Protein Mei2, essentia 99.4 1.3E-11 2.8E-16 113.9 14.3 154 78-246 72-242 (549)
98 PLN03121 nucleic acid binding 99.4 2.8E-12 6.1E-17 107.6 8.9 73 80-156 4-76 (243)
99 KOG0108 mRNA cleavage and poly 99.3 9.9E-13 2.1E-17 121.9 5.8 82 174-256 19-100 (435)
100 KOG0111 Cyclophilin-type pepti 99.3 1.3E-12 2.7E-17 105.9 5.2 80 280-359 8-93 (298)
101 KOG0120 Splicing factor U2AF, 99.3 6.7E-12 1.4E-16 117.0 10.7 177 78-255 286-493 (500)
102 KOG0130 RNA-binding protein RB 99.3 5E-12 1.1E-16 94.4 7.6 83 79-163 70-152 (170)
103 smart00362 RRM_2 RNA recogniti 99.3 7.3E-12 1.6E-16 88.0 8.0 68 83-152 1-68 (72)
104 smart00360 RRM RNA recognition 99.3 1.1E-11 2.4E-16 86.7 8.1 67 86-152 1-67 (71)
105 KOG0111 Cyclophilin-type pepti 99.3 2E-12 4.2E-17 104.9 4.2 87 171-258 8-94 (298)
106 cd00590 RRM RRM (RNA recogniti 99.3 2.9E-11 6.4E-16 85.4 9.7 69 284-352 1-74 (74)
107 PLN03213 repressor of silencin 99.3 1E-11 2.2E-16 112.4 8.8 80 170-254 7-88 (759)
108 KOG0129 Predicted RNA-binding 99.3 1.4E-10 2.9E-15 106.3 15.0 154 78-234 256-431 (520)
109 KOG4454 RNA binding protein (R 99.3 2.5E-12 5.3E-17 104.3 2.9 142 77-241 5-150 (267)
110 KOG0129 Predicted RNA-binding 99.3 1.3E-10 2.9E-15 106.4 14.2 165 168-337 254-432 (520)
111 KOG1365 RNA-binding protein Fu 99.3 5.1E-11 1.1E-15 104.6 11.0 168 80-253 160-361 (508)
112 KOG0116 RasGAP SH3 binding pro 99.2 4.8E-11 1E-15 110.0 11.3 76 282-358 288-369 (419)
113 KOG0130 RNA-binding protein RB 99.2 1.4E-11 2.9E-16 92.1 5.8 86 170-256 69-154 (170)
114 KOG0128 RNA-binding protein SA 99.2 8.2E-13 1.8E-17 127.1 -1.3 236 80-356 570-815 (881)
115 KOG4307 RNA binding protein RB 99.2 2.2E-10 4.8E-15 107.9 14.5 175 174-351 312-509 (944)
116 KOG0108 mRNA cleavage and poly 99.2 2.1E-11 4.6E-16 113.1 7.7 80 82-163 19-98 (435)
117 smart00360 RRM RNA recognition 99.2 7.7E-11 1.7E-15 82.4 8.4 71 178-249 1-71 (71)
118 cd00590 RRM RRM (RNA recogniti 99.2 1E-10 2.2E-15 82.5 8.8 71 83-154 1-71 (74)
119 KOG0132 RNA polymerase II C-te 99.2 7.9E-11 1.7E-15 112.4 10.0 81 280-360 419-499 (894)
120 KOG0153 Predicted RNA-binding 99.2 7.4E-11 1.6E-15 102.5 9.0 82 274-355 220-302 (377)
121 smart00361 RRM_1 RNA recogniti 99.2 9.4E-11 2E-15 81.6 6.8 59 95-153 2-67 (70)
122 smart00361 RRM_1 RNA recogniti 99.1 3.9E-10 8.5E-15 78.5 7.7 62 187-249 2-70 (70)
123 KOG4210 Nuclear localization s 99.0 4.2E-10 9.1E-15 99.9 6.1 177 79-257 86-267 (285)
124 KOG4208 Nucleolar RNA-binding 99.0 1.1E-09 2.4E-14 88.7 7.5 80 78-157 46-126 (214)
125 KOG0415 Predicted peptidyl pro 99.0 6.1E-10 1.3E-14 96.9 5.9 80 78-157 236-315 (479)
126 PF13893 RRM_5: RNA recognitio 99.0 1.2E-09 2.7E-14 72.4 5.8 56 190-251 1-56 (56)
127 KOG0112 Large RNA-binding prot 99.0 5.7E-10 1.2E-14 108.4 5.5 163 170-358 369-533 (975)
128 KOG4210 Nuclear localization s 99.0 2.1E-09 4.5E-14 95.5 8.2 174 171-357 86-265 (285)
129 KOG0415 Predicted peptidyl pro 98.9 1.4E-09 2.9E-14 94.8 6.2 86 170-256 236-321 (479)
130 KOG0132 RNA polymerase II C-te 98.9 2.1E-09 4.5E-14 102.9 7.5 106 81-194 421-527 (894)
131 KOG4660 Protein Mei2, essentia 98.9 2.8E-09 6E-14 98.8 7.0 175 169-355 71-249 (549)
132 KOG0128 RNA-binding protein SA 98.9 1.8E-10 3.9E-15 111.3 -0.9 150 79-253 665-814 (881)
133 KOG0112 Large RNA-binding prot 98.9 1.4E-09 3E-14 105.8 4.5 164 76-255 367-532 (975)
134 KOG4661 Hsp27-ERE-TATA-binding 98.8 5.3E-09 1.1E-13 96.7 6.8 77 280-356 403-485 (940)
135 KOG0153 Predicted RNA-binding 98.8 1.2E-08 2.7E-13 88.9 8.7 82 73-162 220-302 (377)
136 KOG4208 Nucleolar RNA-binding 98.8 1.2E-08 2.5E-13 82.8 7.6 87 168-254 44-130 (214)
137 KOG4454 RNA binding protein (R 98.8 7.3E-10 1.6E-14 90.2 0.3 138 171-342 7-149 (267)
138 KOG0226 RNA-binding proteins [ 98.8 5.8E-09 1.3E-13 87.0 4.9 143 192-352 118-266 (290)
139 KOG4661 Hsp27-ERE-TATA-binding 98.7 6.1E-08 1.3E-12 89.8 7.8 83 170-253 402-484 (940)
140 KOG2193 IGF-II mRNA-binding pr 98.6 7.8E-09 1.7E-13 92.2 1.3 152 174-356 2-157 (584)
141 KOG0533 RRM motif-containing p 98.6 1.1E-07 2.5E-12 81.3 8.0 79 78-157 80-158 (243)
142 PF08777 RRM_3: RNA binding mo 98.6 1.3E-07 2.9E-12 70.8 6.9 70 283-352 2-76 (105)
143 KOG0533 RRM motif-containing p 98.5 5.3E-07 1.1E-11 77.2 8.7 81 278-358 79-164 (243)
144 KOG1924 RhoA GTPase effector D 98.5 4.9E-07 1.1E-11 87.1 9.1 7 230-236 805-811 (1102)
145 KOG0151 Predicted splicing reg 98.5 3.3E-07 7.1E-12 87.3 7.5 81 275-355 167-256 (877)
146 PF04059 RRM_2: RNA recognitio 98.5 1.8E-06 3.8E-11 63.0 9.3 80 82-161 2-85 (97)
147 KOG4209 Splicing factor RNPS1, 98.4 6.8E-07 1.5E-11 76.8 7.9 77 279-356 98-180 (231)
148 PF04059 RRM_2: RNA recognitio 98.4 2.4E-06 5.3E-11 62.3 9.0 80 174-253 2-86 (97)
149 KOG4209 Splicing factor RNPS1, 98.4 4E-07 8.6E-12 78.3 5.6 80 77-157 97-176 (231)
150 PF11608 Limkain-b1: Limkain b 98.4 1.8E-06 4E-11 59.6 7.4 68 283-354 3-75 (90)
151 KOG0151 Predicted splicing reg 98.3 1.2E-06 2.7E-11 83.5 6.4 81 78-160 171-254 (877)
152 KOG4676 Splicing factor, argin 98.3 4.8E-07 1E-11 80.3 2.7 204 82-346 8-216 (479)
153 PF14605 Nup35_RRM_2: Nup53/35 98.2 3.5E-06 7.5E-11 54.4 5.5 52 283-335 2-53 (53)
154 KOG0116 RasGAP SH3 binding pro 98.2 2.9E-06 6.3E-11 78.8 6.7 76 174-251 289-364 (419)
155 KOG2193 IGF-II mRNA-binding pr 98.2 3.1E-07 6.8E-12 82.2 -0.6 155 82-254 2-157 (584)
156 COG5175 MOT2 Transcriptional r 98.1 9.4E-06 2E-10 70.8 7.0 74 282-355 114-202 (480)
157 PF11608 Limkain-b1: Limkain b 98.0 3.6E-05 7.8E-10 53.4 7.1 74 174-257 3-80 (90)
158 PF05172 Nup35_RRM: Nup53/35/4 97.9 5.6E-05 1.2E-09 55.7 7.4 71 282-354 6-90 (100)
159 KOG1855 Predicted RNA-binding 97.9 4.3E-05 9.3E-10 69.1 7.5 64 277-340 226-308 (484)
160 KOG1995 Conserved Zn-finger pr 97.9 8.2E-05 1.8E-09 66.1 9.1 79 279-357 63-155 (351)
161 KOG4849 mRNA cleavage factor I 97.8 2.9E-05 6.4E-10 68.1 5.3 76 77-152 76-153 (498)
162 KOG1995 Conserved Zn-finger pr 97.8 3.5E-05 7.5E-10 68.4 5.5 81 78-160 63-151 (351)
163 PF08777 RRM_3: RNA binding mo 97.6 0.00012 2.6E-09 54.9 5.4 59 82-146 2-60 (105)
164 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00014 3E-09 46.9 4.6 52 82-140 2-53 (53)
165 KOG0115 RNA-binding protein p5 97.5 0.00029 6.3E-09 59.6 6.7 84 228-340 6-94 (275)
166 KOG4849 mRNA cleavage factor I 97.5 0.00012 2.6E-09 64.4 4.2 78 171-249 78-157 (498)
167 KOG1996 mRNA splicing factor [ 97.5 0.00031 6.7E-09 60.5 6.5 59 296-354 300-365 (378)
168 KOG3152 TBP-binding protein, a 97.5 7.4E-05 1.6E-09 63.1 2.5 67 281-347 73-157 (278)
169 KOG3152 TBP-binding protein, a 97.4 0.00011 2.3E-09 62.1 3.2 73 80-152 73-157 (278)
170 PF08952 DUF1866: Domain of un 97.4 0.00067 1.5E-08 53.0 7.3 55 298-355 52-106 (146)
171 KOG1855 Predicted RNA-binding 97.4 0.00023 5E-09 64.6 5.3 81 168-249 226-319 (484)
172 KOG0115 RNA-binding protein p5 97.4 0.00049 1.1E-08 58.3 6.8 93 134-241 5-97 (275)
173 KOG2416 Acinus (induces apopto 97.3 0.00036 7.7E-09 65.9 5.0 80 278-357 440-523 (718)
174 COG5175 MOT2 Transcriptional r 97.3 0.00059 1.3E-08 59.9 5.7 82 172-254 113-203 (480)
175 KOG2202 U2 snRNP splicing fact 97.2 0.00015 3.4E-09 61.4 2.0 57 297-353 83-145 (260)
176 PF10309 DUF2414: Protein of u 97.1 0.003 6.6E-08 41.7 6.7 55 282-338 5-62 (62)
177 KOG2591 c-Mpl binding protein, 97.1 0.0013 2.9E-08 61.7 7.0 98 225-351 146-247 (684)
178 KOG2314 Translation initiation 97.1 0.0021 4.5E-08 60.6 7.6 74 78-152 55-134 (698)
179 KOG2135 Proteins containing th 97.0 0.00058 1.3E-08 62.9 3.0 76 279-355 369-445 (526)
180 PF05172 Nup35_RRM: Nup53/35/4 96.9 0.0022 4.9E-08 47.2 5.4 70 79-150 4-80 (100)
181 KOG2314 Translation initiation 96.8 0.004 8.6E-08 58.8 7.6 71 282-352 58-140 (698)
182 KOG2202 U2 snRNP splicing fact 96.7 0.00095 2.1E-08 56.8 2.4 65 188-253 83-147 (260)
183 PF07576 BRAP2: BRCA1-associat 96.5 0.049 1.1E-06 41.1 10.1 67 82-150 14-81 (110)
184 PF15023 DUF4523: Protein of u 96.4 0.023 4.9E-07 43.9 7.8 76 277-354 81-160 (166)
185 PF04847 Calcipressin: Calcipr 96.4 0.014 3E-07 48.5 7.0 61 295-355 8-70 (184)
186 KOG1996 mRNA splicing factor [ 96.4 0.0097 2.1E-07 51.5 6.1 57 95-151 300-357 (378)
187 KOG4285 Mitotic phosphoprotein 96.3 0.02 4.4E-07 49.9 7.7 73 283-357 198-271 (350)
188 KOG4676 Splicing factor, argin 96.3 0.0077 1.7E-07 54.3 5.2 69 283-352 8-85 (479)
189 PF08675 RNA_bind: RNA binding 96.1 0.049 1.1E-06 38.1 7.2 55 283-340 10-64 (87)
190 KOG3671 Actin regulatory prote 95.9 0.11 2.4E-06 48.8 10.8 29 81-109 481-509 (569)
191 KOG2068 MOT2 transcription fac 95.8 0.0029 6.3E-08 56.2 0.6 73 283-355 78-162 (327)
192 KOG2416 Acinus (induces apopto 95.8 0.0081 1.8E-07 57.1 3.5 78 77-160 440-519 (718)
193 PF08952 DUF1866: Domain of un 95.7 0.027 5.9E-07 44.2 5.4 53 97-158 52-104 (146)
194 PF10309 DUF2414: Protein of u 95.3 0.11 2.5E-06 34.3 6.4 54 82-143 6-62 (62)
195 KOG2253 U1 snRNP complex, subu 95.2 0.039 8.4E-07 53.5 5.7 70 80-158 39-108 (668)
196 PF11767 SET_assoc: Histone ly 95.1 0.11 2.4E-06 35.0 6.2 55 293-350 11-65 (66)
197 PF03467 Smg4_UPF3: Smg-4/UPF3 95.1 0.029 6.4E-07 46.5 4.0 72 79-150 5-82 (176)
198 KOG3973 Uncharacterized conser 94.9 0.056 1.2E-06 48.1 5.4 17 397-413 376-392 (465)
199 PF07576 BRAP2: BRCA1-associat 94.8 0.56 1.2E-05 35.4 9.9 64 282-345 13-81 (110)
200 PF11767 SET_assoc: Histone ly 94.8 0.17 3.8E-06 34.0 6.3 55 184-248 11-65 (66)
201 KOG4574 RNA-binding protein (c 94.7 0.019 4.2E-07 57.0 2.4 73 286-358 302-376 (1007)
202 KOG2891 Surface glycoprotein [ 94.4 0.076 1.6E-06 45.8 4.9 76 281-356 148-268 (445)
203 PF08675 RNA_bind: RNA binding 94.3 0.22 4.8E-06 34.9 6.2 54 84-145 11-64 (87)
204 PF15023 DUF4523: Protein of u 94.3 0.16 3.4E-06 39.4 5.9 73 170-251 83-159 (166)
205 KOG2591 c-Mpl binding protein, 94.2 0.15 3.2E-06 48.5 6.8 71 78-155 172-251 (684)
206 PF03467 Smg4_UPF3: Smg-4/UPF3 94.1 0.12 2.6E-06 42.9 5.4 75 281-355 6-97 (176)
207 PF03880 DbpA: DbpA RNA bindin 93.6 0.44 9.6E-06 33.1 6.9 59 292-353 11-74 (74)
208 PF10567 Nab6_mRNP_bdg: RNA-re 93.4 2.4 5.2E-05 37.4 12.2 168 170-339 12-212 (309)
209 KOG4574 RNA-binding protein (c 93.0 0.068 1.5E-06 53.3 2.6 73 83-161 300-372 (1007)
210 KOG0804 Cytoplasmic Zn-finger 93.0 0.34 7.3E-06 45.1 6.8 68 81-150 74-142 (493)
211 KOG0921 Dosage compensation co 92.8 0.19 4.2E-06 51.0 5.4 10 125-134 472-481 (1282)
212 KOG4285 Mitotic phosphoprotein 92.7 0.3 6.5E-06 42.9 5.8 62 81-150 197-258 (350)
213 PRK11634 ATP-dependent RNA hel 92.7 0.89 1.9E-05 46.1 10.1 61 291-354 496-561 (629)
214 KOG0804 Cytoplasmic Zn-finger 92.5 0.87 1.9E-05 42.5 8.7 72 170-243 71-142 (493)
215 KOG4672 Uncharacterized conser 92.5 0.57 1.2E-05 43.0 7.4 9 186-194 471-479 (487)
216 KOG2253 U1 snRNP complex, subu 91.9 0.26 5.6E-06 48.1 4.9 70 280-352 38-107 (668)
217 PF07292 NID: Nmi/IFP 35 domai 91.9 0.16 3.4E-06 36.4 2.7 72 219-304 1-74 (88)
218 KOG2135 Proteins containing th 91.8 0.13 2.8E-06 48.0 2.7 78 78-164 369-447 (526)
219 KOG2068 MOT2 transcription fac 91.2 0.13 2.9E-06 46.0 2.1 82 173-255 77-164 (327)
220 PHA03247 large tegument protei 91.0 1.3 2.9E-05 50.3 9.5 7 87-93 3002-3008(3151)
221 PF07292 NID: Nmi/IFP 35 domai 90.7 0.29 6.4E-06 35.0 3.1 68 126-194 1-73 (88)
222 KOG4019 Calcineurin-mediated s 88.4 0.5 1.1E-05 38.4 3.1 73 283-355 11-89 (193)
223 KOG2318 Uncharacterized conser 87.6 3.3 7.2E-05 40.1 8.4 74 279-352 171-304 (650)
224 PF04847 Calcipressin: Calcipr 86.9 1 2.3E-05 37.5 4.3 53 94-152 8-62 (184)
225 KOG2318 Uncharacterized conser 86.6 4.9 0.00011 39.0 8.9 83 78-160 171-305 (650)
226 PF10567 Nab6_mRNP_bdg: RNA-re 85.6 2 4.4E-05 37.9 5.5 79 277-355 10-107 (309)
227 KOG4410 5-formyltetrahydrofola 84.8 6.6 0.00014 34.4 8.1 50 280-329 328-378 (396)
228 KOG1923 Rac1 GTPase effector F 83.8 3.4 7.4E-05 41.5 6.7 6 102-107 403-408 (830)
229 PF14111 DUF4283: Domain of un 83.4 2.3 5.1E-05 34.2 4.9 112 184-317 28-140 (153)
230 PF03880 DbpA: DbpA RNA bindin 80.9 8.4 0.00018 26.6 6.2 58 91-157 11-73 (74)
231 COG5178 PRP8 U5 snRNP spliceos 78.6 2 4.3E-05 45.1 3.3 38 80-117 71-108 (2365)
232 KOG3875 Peroxisomal biogenesis 74.9 4.2 9.1E-05 36.2 3.9 12 396-407 90-101 (362)
233 KOG4410 5-formyltetrahydrofola 73.1 19 0.00041 31.7 7.3 50 172-227 329-378 (396)
234 KOG1830 Wiskott Aldrich syndro 72.4 27 0.00058 32.8 8.4 29 227-255 478-506 (518)
235 PF03468 XS: XS domain; Inter 70.6 6.7 0.00015 30.0 3.7 45 93-140 29-74 (116)
236 KOG3973 Uncharacterized conser 68.3 12 0.00026 33.9 5.2 20 175-194 151-170 (465)
237 KOG2891 Surface glycoprotein [ 67.6 19 0.00041 31.6 6.1 92 108-207 67-194 (445)
238 PF15513 DUF4651: Domain of un 67.3 14 0.00031 24.4 4.1 18 297-314 9-26 (62)
239 PF00403 HMA: Heavy-metal-asso 65.7 35 0.00075 22.3 6.8 54 284-337 1-58 (62)
240 KOG4483 Uncharacterized conser 64.0 23 0.0005 32.9 6.2 56 80-142 390-446 (528)
241 KOG2295 C2H2 Zn-finger protein 60.9 2.1 4.5E-05 41.2 -0.8 70 81-150 231-300 (648)
242 COG5178 PRP8 U5 snRNP spliceos 60.9 8.5 0.00018 40.8 3.3 9 107-115 135-143 (2365)
243 KOG4483 Uncharacterized conser 59.7 15 0.00032 34.1 4.3 56 281-337 390-446 (528)
244 COG5638 Uncharacterized conser 58.3 52 0.0011 30.7 7.5 77 276-352 140-294 (622)
245 PHA03378 EBNA-3B; Provisional 53.8 99 0.0022 31.2 9.0 25 79-103 804-830 (991)
246 KOG2295 C2H2 Zn-finger protein 52.3 3.8 8.2E-05 39.5 -0.6 67 280-346 229-301 (648)
247 TIGR02542 B_forsyth_147 Bacter 50.9 78 0.0017 23.9 6.1 45 182-226 83-129 (145)
248 PF03468 XS: XS domain; Inter 50.5 30 0.00066 26.4 4.2 37 294-330 29-68 (116)
249 PF14111 DUF4283: Domain of un 49.8 19 0.00041 28.8 3.2 107 93-207 29-138 (153)
250 KOG4019 Calcineurin-mediated s 49.5 13 0.00029 30.4 2.2 65 81-151 10-79 (193)
251 PRK14548 50S ribosomal protein 46.8 1E+02 0.0022 22.0 6.0 58 176-236 23-81 (84)
252 COG5638 Uncharacterized conser 41.7 1.6E+02 0.0034 27.7 7.8 40 77-116 142-186 (622)
253 TIGR03636 L23_arch archaeal ri 41.5 95 0.0021 21.7 5.1 54 285-338 16-74 (77)
254 PF08544 GHMP_kinases_C: GHMP 41.4 1E+02 0.0022 21.4 5.7 42 297-339 37-80 (85)
255 KOG1925 Rac1 GTPase effector F 41.1 97 0.0021 30.0 6.6 26 79-104 304-329 (817)
256 COG5193 LHP1 La protein, small 40.7 14 0.00031 34.3 1.2 61 81-141 174-244 (438)
257 KOG3424 40S ribosomal protein 40.4 91 0.002 23.6 5.1 47 184-231 34-84 (132)
258 PF11823 DUF3343: Protein of u 40.2 42 0.00092 23.0 3.3 28 319-346 2-29 (73)
259 PRK14548 50S ribosomal protein 40.0 97 0.0021 22.1 5.1 54 285-338 23-81 (84)
260 TIGR03636 L23_arch archaeal ri 38.1 1.4E+02 0.003 20.9 6.1 58 175-235 15-73 (77)
261 PRK10629 EnvZ/OmpR regulon mod 38.1 1.9E+02 0.0042 22.5 8.3 59 294-354 50-109 (127)
262 COG2608 CopZ Copper chaperone 37.7 1.2E+02 0.0026 20.6 5.2 46 283-328 4-49 (71)
263 PF02714 DUF221: Domain of unk 37.1 38 0.00083 31.2 3.5 35 321-357 1-35 (325)
264 PF02714 DUF221: Domain of unk 36.8 78 0.0017 29.1 5.5 55 126-194 1-55 (325)
265 KOG4213 RNA-binding protein La 36.3 53 0.0011 27.0 3.6 55 82-142 112-169 (205)
266 PRK15313 autotransport protein 36.3 1.1E+02 0.0023 32.4 6.7 8 82-89 639-646 (955)
267 KOG1295 Nonsense-mediated deca 36.0 35 0.00076 31.6 2.9 69 80-148 6-77 (376)
268 COG4907 Predicted membrane pro 33.4 53 0.0011 31.3 3.6 14 329-342 526-539 (595)
269 KOG4008 rRNA processing protei 32.9 37 0.0008 29.2 2.4 35 280-314 38-72 (261)
270 PF12829 Mhr1: Transcriptional 31.2 1.1E+02 0.0024 22.1 4.3 51 289-339 19-72 (91)
271 KOG4008 rRNA processing protei 30.6 43 0.00092 28.8 2.4 36 77-112 36-71 (261)
272 PF00403 HMA: Heavy-metal-asso 30.5 1.5E+02 0.0033 19.0 5.9 54 83-142 1-58 (62)
273 PF01690 PLRV_ORF5: Potato lea 30.1 48 0.001 31.8 2.8 12 123-134 123-134 (465)
274 PRK11901 hypothetical protein; 29.3 4.6E+02 0.0099 24.2 11.7 64 78-146 242-307 (327)
275 COG2004 RPS24A Ribosomal prote 27.1 2.7E+02 0.0059 20.9 5.9 48 183-231 30-81 (107)
276 cd04908 ACT_Bt0572_1 N-termina 26.9 1.1E+02 0.0025 20.1 3.7 43 295-337 14-59 (66)
277 PF03439 Spt5-NGN: Early trans 26.3 1.2E+02 0.0027 21.4 3.9 35 308-342 33-68 (84)
278 PF14893 PNMA: PNMA 26.2 78 0.0017 29.3 3.5 45 283-327 19-71 (331)
279 PF01690 PLRV_ORF5: Potato lea 26.1 55 0.0012 31.4 2.5 8 83-90 52-59 (465)
280 PF10281 Ish1: Putative stress 25.8 62 0.0013 18.9 1.9 18 293-310 3-20 (38)
281 PRK11901 hypothetical protein; 25.5 2.3E+02 0.005 26.0 6.2 62 171-238 243-306 (327)
282 KOG2675 Adenylate cyclase-asso 25.2 40 0.00086 31.9 1.4 11 320-330 452-462 (480)
283 PF07530 PRE_C2HC: Associated 24.6 1.3E+02 0.0028 20.4 3.5 64 188-254 2-65 (68)
284 KOG4365 Uncharacterized conser 24.5 14 0.00031 34.6 -1.5 94 280-374 1-100 (572)
285 PF00585 Thr_dehydrat_C: C-ter 23.9 2.4E+02 0.0052 20.3 5.1 61 84-146 12-74 (91)
286 PF08156 NOP5NT: NOP5NT (NUC12 23.6 26 0.00056 23.7 -0.1 39 297-339 27-65 (67)
287 PF11411 DNA_ligase_IV: DNA li 23.1 63 0.0014 18.8 1.4 15 92-106 20-34 (36)
288 cd00874 RNA_Cyclase_Class_II R 23.1 6.1E+02 0.013 23.5 9.0 113 88-224 119-238 (326)
289 PF04026 SpoVG: SpoVG; InterP 22.9 1.8E+02 0.0038 20.8 4.0 26 107-132 2-27 (84)
290 COG4010 Uncharacterized protei 22.7 2.3E+02 0.005 22.4 4.8 47 88-144 118-164 (170)
291 PRK07764 DNA polymerase III su 21.8 3.5E+02 0.0076 28.8 7.6 18 124-141 546-563 (824)
292 COG2088 SpoVG Uncharacterized 21.8 1.5E+02 0.0032 21.2 3.3 26 107-132 2-27 (95)
293 COG5470 Uncharacterized conser 21.7 2E+02 0.0043 21.0 4.0 38 299-336 25-71 (96)
294 cd04889 ACT_PDH-BS-like C-term 21.6 2.2E+02 0.0047 17.8 5.1 39 297-335 13-55 (56)
295 KOG1295 Nonsense-mediated deca 21.4 1.2E+02 0.0026 28.4 3.6 62 282-343 7-77 (376)
296 PF05918 API5: Apoptosis inhib 21.0 32 0.0007 34.1 0.0 12 223-234 330-341 (556)
297 PRK11230 glycolate oxidase sub 20.7 3.1E+02 0.0068 27.1 6.7 43 298-340 205-256 (499)
298 COG4010 Uncharacterized protei 20.2 3.1E+02 0.0067 21.7 5.1 46 289-338 118-163 (170)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=4.9e-46 Score=348.35 Aligned_cols=272 Identities=26% Similarity=0.446 Sum_probs=223.4
Q ss_pred CcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeee
Q 015091 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (413)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 159 (413)
...+|||+|||.++++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|.+|++.|||..+.++. +++.+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~--i~v~~ 79 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKT--IKVSY 79 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCee--EEEEe
Confidence 4678999999999999999999999999999999999999999999999999999999999999999997665 44444
Q ss_pred ccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCc
Q 015091 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (413)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~ 239 (413)
+... ......++|||+||+.++++++|+++| +.||.|..+.++.+..++.++|||||+|.+.++|+.|++.|++.
T Consensus 80 a~~~----~~~~~~~~l~v~~l~~~~~~~~l~~~f-~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~ 154 (352)
T TIGR01661 80 ARPS----SDSIKGANLYVSGLPKTMTQHELESIF-SPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGT 154 (352)
T ss_pred eccc----ccccccceEEECCccccCCHHHHHHHH-hccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 4322 223345689999999999999999999 89999999999999888999999999999999999999999999
Q ss_pred cccC--cceEeccCCCCCccCCCccCC--------CCcc-----------------------------------------
Q 015091 240 FCST--RPMRIGPATNKKTVSGQQQYP--------KASY----------------------------------------- 268 (413)
Q Consensus 240 ~~~g--~~i~v~~~~~~~~~~~~~~~~--------~~~~----------------------------------------- 268 (413)
.+.+ ..|.|.++............. ....
T Consensus 155 ~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (352)
T TIGR01661 155 TPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHA 234 (352)
T ss_pred ccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcc
Confidence 8877 567787775543211100000 0000
Q ss_pred -------cC--------------cccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEE
Q 015091 269 -------QN--------------SQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCG 321 (413)
Q Consensus 269 -------~~--------------~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~a 321 (413)
.. ...........+.+|||+||+.++++++|+++|++||.|.+++|.++ ||||
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~a 314 (352)
T TIGR01661 235 VAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYG 314 (352)
T ss_pred cccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceE
Confidence 00 00000011223447999999999999999999999999999999754 7999
Q ss_pred EEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCCC
Q 015091 322 FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 358 (413)
Q Consensus 322 fV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 358 (413)
||+|.+.++|.+|+..|||..|+||.|+|.|..++..
T Consensus 315 FV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 315 FVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred EEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999999999999999887643
No 2
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=3.8e-45 Score=348.29 Aligned_cols=249 Identities=21% Similarity=0.354 Sum_probs=208.3
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeee
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 158 (413)
...++|||+|||.++++++|+++|++||.|.+|+|++| .+|+++|||||+|.+.++|++|++.||+..+...+ .+.+.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr-~l~V~ 133 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGR-LLGVC 133 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCc-ccccc
Confidence 45689999999999999999999999999999999999 68999999999999999999999999998885322 22222
Q ss_pred eccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCC-cceeEEEE-cCCCCCCceeEEEEeCCHHHHHHHHHhh
Q 015091 159 WASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS-TKGAKVVI-DRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (413)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~-v~~~~~~~-~~~~g~~~g~afv~f~~~~~a~~a~~~l 236 (413)
+ ....++|||+|||.++++++|.+.| +.+++ +.++.+.. ....++++|||||+|.+.++|..|++.|
T Consensus 134 ~----------S~~~~rLFVgNLP~~~TeeeL~eeF-skv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL 202 (578)
T TIGR01648 134 I----------SVDNCRLFVGGIPKNKKREEILEEF-SKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKL 202 (578)
T ss_pred c----------cccCceeEeecCCcchhhHHHHHHh-hcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHh
Confidence 2 2235789999999999999999999 66653 44443322 2335678999999999999999999888
Q ss_pred CC--ccccCcceEeccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcC--CCeEEE
Q 015091 237 NG--VFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQY--GQLVHV 312 (413)
Q Consensus 237 ~~--~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~--G~i~~v 312 (413)
+. ..+.|+.|.|+++........ ......++|||+||+.++++++|+++|+.| |.|++|
T Consensus 203 ~~gki~l~Gr~I~VdwA~p~~~~d~-----------------~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV 265 (578)
T TIGR01648 203 MPGRIQLWGHVIAVDWAEPEEEVDE-----------------DVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERV 265 (578)
T ss_pred hccceEecCceEEEEeecccccccc-----------------cccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEE
Confidence 64 457899999999876543221 112245789999999999999999999999 999999
Q ss_pred EeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCCCC
Q 015091 313 KIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 359 (413)
Q Consensus 313 ~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 359 (413)
.+.+ ++|||+|++.++|.+|++.||+.+|+|+.|+|+|++++...
T Consensus 266 ~~~r--gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 266 KKIR--DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred Eeec--CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 8875 59999999999999999999999999999999999876443
No 3
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.8e-45 Score=322.37 Aligned_cols=251 Identities=19% Similarity=0.339 Sum_probs=219.3
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCC-CCcceee
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN-GEQNFRL 157 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~-~~~~~~~ 157 (413)
...+.|||+.||.++.|++|..+|++.|+|.++++++|+.+|.++|||||.|.+.++|++|++.||+..|.. +.+.|.+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 567899999999999999999999999999999999999999999999999999999999999999998863 3334444
Q ss_pred eeccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCC-CCCCceeEEEEeCCHHHHHHHHHhh
Q 015091 158 NWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRL-TGRTKGYGFVRFGDESEQLRAMTEM 236 (413)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~l 236 (413)
+..+++|||||||.+.++++|++.+.+.-..|.+|.+..+.. ..++||||||+|.+...|..|-.+|
T Consensus 161 ------------Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl 228 (506)
T KOG0117|consen 161 ------------SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKL 228 (506)
T ss_pred ------------eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhc
Confidence 355678999999999999999999944444577776666543 3578999999999999999998777
Q ss_pred CC--ccccCcceEeccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEe
Q 015091 237 NG--VFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI 314 (413)
Q Consensus 237 ~~--~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~ 314 (413)
-. +.++|..+.|.|+.+...... +.....+.|||+||+.++|+|.|+++|++||.|++|+.
T Consensus 229 ~~g~~klwgn~~tVdWAep~~e~de-----------------d~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk 291 (506)
T KOG0117|consen 229 MPGKIKLWGNAITVDWAEPEEEPDE-----------------DTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKK 291 (506)
T ss_pred cCCceeecCCcceeeccCcccCCCh-----------------hhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeec
Confidence 54 568999999999998765442 23445688999999999999999999999999999999
Q ss_pred eCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCCCCC
Q 015091 315 PAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 360 (413)
Q Consensus 315 ~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 360 (413)
.+| ||||.|.+.++|.+|++.+||++|+|..|+|.+||+..++.
T Consensus 292 ~rD--YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 292 PRD--YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred ccc--eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 877 99999999999999999999999999999999999876544
No 4
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-44 Score=297.66 Aligned_cols=237 Identities=32% Similarity=0.595 Sum_probs=202.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
..+.+||||+||..++||+-|..+|+++|.|.+|+++.+. +++
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e-------------------------------------~~v 45 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDE-------------------------------------LKV 45 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehhh-------------------------------------hcc
Confidence 4678999999999999999999999999999999998761 223
Q ss_pred eeccCCC-CCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhh
Q 015091 158 NWASFGA-GEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (413)
Q Consensus 158 ~~~~~~~-~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l 236 (413)
.|+.... ..+........+||+.|...++.++|++.| ..||+|.++++++|..|+++|||+||.|...++|+.||..|
T Consensus 46 ~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF-~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 46 NWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAF-APFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred ccccCcccCCCCccccceeEEehhcchhcchHHHHHHh-ccccccccceEeecccCCcccceeEEeccchHHHHHHHHHh
Confidence 3332221 122223346689999999999999999999 89999999999999999999999999999999999999999
Q ss_pred CCccccCcceEeccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeC
Q 015091 237 NGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA 316 (413)
Q Consensus 237 ~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~ 316 (413)
+|..|++|.|+-+|+..+........ ..-...-......+++|||+||...++|++|++.|+.||.|.+|++.+
T Consensus 125 nGqWlG~R~IRTNWATRKp~e~n~~~------ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk 198 (321)
T KOG0148|consen 125 NGQWLGRRTIRTNWATRKPSEMNGKP------LTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK 198 (321)
T ss_pred CCeeeccceeeccccccCccccCCCC------ccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec
Confidence 99999999999999998873322111 111122344567889999999999999999999999999999999999
Q ss_pred CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCCC
Q 015091 317 GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 358 (413)
Q Consensus 317 ~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 358 (413)
++||+||+|++.|+|..||..+|+.+|+|..++|.|.|....
T Consensus 199 ~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 199 DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred ccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCC
Confidence 999999999999999999999999999999999999987544
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=7.9e-42 Score=337.84 Aligned_cols=270 Identities=25% Similarity=0.445 Sum_probs=223.4
Q ss_pred CcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeee
Q 015091 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (413)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 159 (413)
...+|||+||+.++++++|+++|+.||.|.+|++..+. +|+++|||||+|.+.++|.+|++.+||..+.++.+.+....
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~ 165 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFI 165 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccc
Confidence 35689999999999999999999999999999999986 68999999999999999999999999999877655443222
Q ss_pred ccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCc
Q 015091 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (413)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~ 239 (413)
..... ........++|||+||+.++++++|+++| +.||.|.++.++.+. +++++|||||+|.+.++|.+|++.+++.
T Consensus 166 ~~~~~-~~~~~~~~~~l~V~nl~~~~tee~L~~~F-~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~ 242 (562)
T TIGR01628 166 KKHER-EAAPLKKFTNLYVKNLDPSVNEDKLRELF-AKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGK 242 (562)
T ss_pred ccccc-ccccccCCCeEEEeCCCCcCCHHHHHHHH-HhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCc
Confidence 11111 12234455789999999999999999999 899999999999885 7889999999999999999999999999
Q ss_pred ccc----CcceEeccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEee
Q 015091 240 FCS----TRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 315 (413)
Q Consensus 240 ~~~----g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~ 315 (413)
.+. ++.+.|.++..+........... ..............+|||+||+.++++++|+++|+.||.|+++.+.
T Consensus 243 ~i~~~~~g~~l~v~~a~~k~er~~~~~~~~----~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~ 318 (562)
T TIGR01628 243 KIGLAKEGKKLYVGRAQKRAEREAELRRKF----EELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVM 318 (562)
T ss_pred EecccccceeeEeecccChhhhHHHHHhhH----HhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEE
Confidence 999 99999988766544321100000 0000111223456789999999999999999999999999999996
Q ss_pred CC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCC
Q 015091 316 AG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 357 (413)
Q Consensus 316 ~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 357 (413)
.+ +|+|||+|.+.++|.+|+..|||..|+|+.|.|.++..+.
T Consensus 319 ~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 319 LDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred ECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 54 6899999999999999999999999999999999998754
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.5e-41 Score=335.80 Aligned_cols=252 Identities=28% Similarity=0.519 Sum_probs=220.9
Q ss_pred eeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeeeccC
Q 015091 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASF 162 (413)
Q Consensus 83 ~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~~ 162 (413)
+|||+||+.++|+++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|++|++.+|+..+.+ ..|++.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~g--k~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGG--KPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC--eeEEeecccc
Confidence 79999999999999999999999999999999999999999999999999999999999999998865 5567777654
Q ss_pred CCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCcccc
Q 015091 163 GAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS 242 (413)
Q Consensus 163 ~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 242 (413)
.... ......+|||+||+.++++++|+++| +.||.|.+|+++.+. +|+++|||||+|.+.++|.+|++.+++..+.
T Consensus 80 ~~~~--~~~~~~~vfV~nLp~~~~~~~L~~~F-~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~ 155 (562)
T TIGR01628 80 DPSL--RRSGVGNIFVKNLDKSVDNKALFDTF-SKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLN 155 (562)
T ss_pred cccc--cccCCCceEEcCCCccCCHHHHHHHH-HhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEec
Confidence 3222 22345689999999999999999999 899999999999885 7889999999999999999999999999999
Q ss_pred CcceEeccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-----
Q 015091 243 TRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG----- 317 (413)
Q Consensus 243 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~----- 317 (413)
++.|.|.....+.... .......++|||+||+.++++++|+++|+.||.|.++.+.++
T Consensus 156 ~~~i~v~~~~~~~~~~-----------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~ 218 (562)
T TIGR01628 156 DKEVYVGRFIKKHERE-----------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRS 218 (562)
T ss_pred CceEEEeccccccccc-----------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCc
Confidence 9999997665443321 112234568999999999999999999999999999998653
Q ss_pred CcEEEEEecCHHHHHHHHHHhcCceeC----CeeEEEEeccCCC
Q 015091 318 KRCGFVQFADRSCAEEALRMLNGTQLG----GQNIRLSWGRSPS 357 (413)
Q Consensus 318 ~~~afV~f~~~~~a~~a~~~l~~~~~~----g~~l~v~~~~~~~ 357 (413)
+|+|||+|.+.++|.+|++.|++..|. |+.|.|.+++.+.
T Consensus 219 ~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~ 262 (562)
T TIGR01628 219 RGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRA 262 (562)
T ss_pred ccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChh
Confidence 679999999999999999999999999 9999998876543
No 7
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.6e-41 Score=276.21 Aligned_cols=272 Identities=26% Similarity=0.454 Sum_probs=228.8
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
......|.|.-||..+|+++|+.+|+.+|+|++|++++|+.+|.+.||+||.|.++++|++|+..|||..+. .++|++
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ--~KTIKV 115 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQ--NKTIKV 115 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeec--cceEEE
Confidence 344556999999999999999999999999999999999999999999999999999999999999999884 567777
Q ss_pred eeccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhC
Q 015091 158 NWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237 (413)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~ 237 (413)
.++..++. .....+|||.+||+.+|..+|..+| +.||.|...+|+.|..+|.+||.+||.|+..++|+.||+.||
T Consensus 116 SyARPSs~----~Ik~aNLYvSGlPktMtqkelE~iF-s~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lN 190 (360)
T KOG0145|consen 116 SYARPSSD----SIKDANLYVSGLPKTMTQKELEQIF-SPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLN 190 (360)
T ss_pred EeccCChh----hhcccceEEecCCccchHHHHHHHH-HHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhcc
Confidence 77765543 3344589999999999999999999 899999999999999999999999999999999999999999
Q ss_pred CccccC--cceEeccCCCCCccCCCcc-----------CC--------CC-------------cccC---------cccc
Q 015091 238 GVFCST--RPMRIGPATNKKTVSGQQQ-----------YP--------KA-------------SYQN---------SQVA 274 (413)
Q Consensus 238 ~~~~~g--~~i~v~~~~~~~~~~~~~~-----------~~--------~~-------------~~~~---------~~~~ 274 (413)
|..-.| ..|.|+++........... .. .. .... ....
T Consensus 191 G~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~ 270 (360)
T KOG0145|consen 191 GQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVN 270 (360)
T ss_pred CCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeec
Confidence 988655 6788988876533221110 00 00 0000 0001
Q ss_pred cCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeE
Q 015091 275 QSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNI 348 (413)
Q Consensus 275 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l 348 (413)
.........+|||.||..+..|..|.++|..||.|..|++.+| |||+||++.+.++|..|+..|||..+++|.|
T Consensus 271 lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvL 350 (360)
T KOG0145|consen 271 LPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 350 (360)
T ss_pred cCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEE
Confidence 1223345789999999999999999999999999999999876 7999999999999999999999999999999
Q ss_pred EEEeccCC
Q 015091 349 RLSWGRSP 356 (413)
Q Consensus 349 ~v~~~~~~ 356 (413)
.|+|...+
T Consensus 351 QVsFKtnk 358 (360)
T KOG0145|consen 351 QVSFKTNK 358 (360)
T ss_pred EEEEecCC
Confidence 99997653
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.2e-38 Score=307.10 Aligned_cols=265 Identities=18% Similarity=0.190 Sum_probs=206.6
Q ss_pred CcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHh--CCCcCCCCCcceee
Q 015091 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF--NGTPMPNGEQNFRL 157 (413)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l--~g~~~~~~~~~~~~ 157 (413)
++++|||+|||+++|+++|+++|+.||.|.+|++++++ +||||+|.+.++|++|++.+ ++..+.+ +.+++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k------~~afVef~~~e~A~~Ai~~~~~~~~~l~g--~~l~v 72 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK------RQALVEFEDEESAKACVNFATSVPIYIRG--QPAFF 72 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC------CEEEEEeCchHHHHHHHHHhhcCCceEcC--eEEEE
Confidence 47899999999999999999999999999999998754 79999999999999999875 5566655 55666
Q ss_pred eeccCCCCCCCC--------CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHH
Q 015091 158 NWASFGAGEKRD--------DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229 (413)
Q Consensus 158 ~~~~~~~~~~~~--------~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a 229 (413)
.|+......... .....+|||+||+.++++++|+++| +.||.|.+|.++.+. .+++|||+|.+.++|
T Consensus 73 ~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F-~~~G~V~~v~i~~~~----~~~~afVef~~~~~A 147 (481)
T TIGR01649 73 NYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIF-NPYGKVLRIVTFTKN----NVFQALVEFESVNSA 147 (481)
T ss_pred EecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHH-hccCCEEEEEEEecC----CceEEEEEECCHHHH
Confidence 665433211111 1122479999999999999999999 899999999987654 246899999999999
Q ss_pred HHHHHhhCCccccC--cceEeccCCCCCccC-----CCccCC--------C--------Cccc----------------C
Q 015091 230 LRAMTEMNGVFCST--RPMRIGPATNKKTVS-----GQQQYP--------K--------ASYQ----------------N 270 (413)
Q Consensus 230 ~~a~~~l~~~~~~g--~~i~v~~~~~~~~~~-----~~~~~~--------~--------~~~~----------------~ 270 (413)
.+|++.||+..+.+ ..|+|.++......- ..+... . .... .
T Consensus 148 ~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 227 (481)
T TIGR01649 148 QHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSS 227 (481)
T ss_pred HHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCccccc
Confidence 99999999999865 477887776532210 000000 0 0000 0
Q ss_pred c------------------------------c------cccCCCCCCCceEEEecCCC-CCCHHHHHHHHhcCCCeEEEE
Q 015091 271 S------------------------------Q------VAQSDDDPNNTTVFVGNLDS-IVTDEHLRELFSQYGQLVHVK 313 (413)
Q Consensus 271 ~------------------------------~------~~~~~~~~~~~~l~v~nlp~-~~~~~~l~~~f~~~G~i~~v~ 313 (413)
. . .........+++|||+||+. .+++++|+++|+.||.|.+|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vk 307 (481)
T TIGR01649 228 HGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVK 307 (481)
T ss_pred CCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEE
Confidence 0 0 00001134668999999997 699999999999999999999
Q ss_pred eeCC-CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCC
Q 015091 314 IPAG-KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 357 (413)
Q Consensus 314 ~~~~-~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 357 (413)
+.++ +++|||+|.+.++|.+|+..|||..|.|+.|+|.+++...
T Consensus 308 i~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 308 FMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred EEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 9876 6899999999999999999999999999999999987653
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=1.1e-38 Score=308.78 Aligned_cols=277 Identities=22% Similarity=0.360 Sum_probs=220.8
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
...+.++|||+|||..+++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|+. |+|..+.+..+.+.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999995 89999977666655
Q ss_pred eeeccCCCCC------CCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHH
Q 015091 157 LNWASFGAGE------KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQL 230 (413)
Q Consensus 157 ~~~~~~~~~~------~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~ 230 (413)
.......... .......++|||+||+.++++++|+++| +.||.|..|.++.+..+|.++|||||+|.+.++|.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f-~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIF-EPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHH-HhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 4332211110 0112336899999999999999999999 89999999999999989999999999999999999
Q ss_pred HHHHhhCCccccCcceEeccCCCCCccCCCcc-----------------------------CC---C-----C-------
Q 015091 231 RAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ-----------------------------YP---K-----A------- 266 (413)
Q Consensus 231 ~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~-----------------------------~~---~-----~------- 266 (413)
+|++.|++..+.|+.|.|.++........... .. . .
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALM 322 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhh
Confidence 99999999999999999999653211110000 00 0 0
Q ss_pred -------ccc---C-------------c-ccccCCCCCCCceEEEecCCCCCC----------HHHHHHHHhcCCCeEEE
Q 015091 267 -------SYQ---N-------------S-QVAQSDDDPNNTTVFVGNLDSIVT----------DEHLRELFSQYGQLVHV 312 (413)
Q Consensus 267 -------~~~---~-------------~-~~~~~~~~~~~~~l~v~nlp~~~~----------~~~l~~~f~~~G~i~~v 312 (413)
... . . ..........+++|+|.||-...+ .+||++.|++||.|++|
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v 402 (457)
T TIGR01622 323 QKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHI 402 (457)
T ss_pred ccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEE
Confidence 000 0 0 000000224568899999955433 36899999999999999
Q ss_pred Eee--CCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccC
Q 015091 313 KIP--AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355 (413)
Q Consensus 313 ~~~--~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 355 (413)
.+. ...|++||+|.+.++|.+|++.|||+.|+|+.|.+.|...
T Consensus 403 ~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 403 YVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred EEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 986 3479999999999999999999999999999999998654
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=3.9e-38 Score=303.58 Aligned_cols=267 Identities=21% Similarity=0.333 Sum_probs=213.6
Q ss_pred CcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeee
Q 015091 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (413)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 159 (413)
...+|+|.||++.+|+++|+++|+.||.|.+|.++++.. +++|||+|.+.++|.+|++.|||..|.++.+.++++|
T Consensus 95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~ 170 (481)
T TIGR01649 95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEY 170 (481)
T ss_pred ceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEE
Confidence 345799999999999999999999999999999987642 3689999999999999999999999987766777766
Q ss_pred ccCCCCC------C------------------------------------------------------------------
Q 015091 160 ASFGAGE------K------------------------------------------------------------------ 167 (413)
Q Consensus 160 ~~~~~~~------~------------------------------------------------------------------ 167 (413)
+...... +
T Consensus 171 sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (481)
T TIGR01649 171 AKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSR 250 (481)
T ss_pred ecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCC
Confidence 5421100 0
Q ss_pred -------------------CCCCCCceEEecCCCC-CCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHH
Q 015091 168 -------------------RDDTPDHTIFVGDLAA-DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227 (413)
Q Consensus 168 -------------------~~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~ 227 (413)
.....+++|||+||++ .+++++|+++| +.||.|..|+++.+. +|+|||+|.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF-~~yG~V~~vki~~~~-----~g~afV~f~~~~ 324 (481)
T TIGR01649 251 YRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLF-CVYGNVERVKFMKNK-----KETALIEMADPY 324 (481)
T ss_pred CcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHH-HhcCCeEEEEEEeCC-----CCEEEEEECCHH
Confidence 0012456999999998 69999999999 899999999998864 799999999999
Q ss_pred HHHHHHHhhCCccccCcceEeccCCCCCccCCCcc-----------CCCCcccCcc----cccCCCCCCCceEEEecCCC
Q 015091 228 EQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ-----------YPKASYQNSQ----VAQSDDDPNNTTVFVGNLDS 292 (413)
Q Consensus 228 ~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~-----------~~~~~~~~~~----~~~~~~~~~~~~l~v~nlp~ 292 (413)
+|..|++.|++..+.|+.|+|.++........+.. .......... .........+.+|||+|||.
T Consensus 325 ~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~ 404 (481)
T TIGR01649 325 QAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPL 404 (481)
T ss_pred HHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCC
Confidence 99999999999999999999998765432211110 0000000000 00011234678999999999
Q ss_pred CCCHHHHHHHHhcCCC--eEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCceeCCee------EEEEeccCC
Q 015091 293 IVTDEHLRELFSQYGQ--LVHVKIPAG----KRCGFVQFADRSCAEEALRMLNGTQLGGQN------IRLSWGRSP 356 (413)
Q Consensus 293 ~~~~~~l~~~f~~~G~--i~~v~~~~~----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~------l~v~~~~~~ 356 (413)
++++++|+++|+.||. |+.+++... +++|||+|++.++|.+|+..||+..|+++. |+|.|++++
T Consensus 405 ~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 405 SVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 9999999999999998 888888543 589999999999999999999999999985 999998863
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=2.2e-37 Score=303.83 Aligned_cols=273 Identities=19% Similarity=0.262 Sum_probs=208.8
Q ss_pred CCCCCCcceeeecCCCCCCCHHHHHHHhhcc------------CceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 015091 75 QGQPGEIRTLWIGDLQYWMDETYLNTCFAHT------------GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142 (413)
Q Consensus 75 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~------------G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~ 142 (413)
+......++|||+|||+.+|+++|+++|+.+ +.|..+.+. +.+|||||+|.+.++|..|| .
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al-~ 241 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAM-A 241 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhh-c
Confidence 3456778999999999999999999999875 234555543 44599999999999999999 5
Q ss_pred hCCCcCCCCCcceeeeeccC--C--------C-------------CCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCC
Q 015091 143 FNGTPMPNGEQNFRLNWASF--G--------A-------------GEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199 (413)
Q Consensus 143 l~g~~~~~~~~~~~~~~~~~--~--------~-------------~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g 199 (413)
|+|..+.+..+.|....... . . .........++|||+||+..+++++|+++| +.||
T Consensus 242 l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f-~~~G 320 (509)
T TIGR01642 242 LDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELL-ESFG 320 (509)
T ss_pred CCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcC
Confidence 99998877555443211100 0 0 000112345789999999999999999999 8999
Q ss_pred CcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCCCCccCCCccCCC---Cccc---Cccc
Q 015091 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPK---ASYQ---NSQV 273 (413)
Q Consensus 200 ~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~---~~~~---~~~~ 273 (413)
.|..+.++.+..+|.++|||||+|.+.++|..|++.|++..|.|+.|.|.++.............. .... ....
T Consensus 321 ~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (509)
T TIGR01642 321 DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQS 400 (509)
T ss_pred CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhh
Confidence 999999999988999999999999999999999999999999999999999865433221111000 0000 0000
Q ss_pred ccCCCCCCCceEEEecCCCC--C--------CHHHHHHHHhcCCCeEEEEeeCC---------CcEEEEEecCHHHHHHH
Q 015091 274 AQSDDDPNNTTVFVGNLDSI--V--------TDEHLRELFSQYGQLVHVKIPAG---------KRCGFVQFADRSCAEEA 334 (413)
Q Consensus 274 ~~~~~~~~~~~l~v~nlp~~--~--------~~~~l~~~f~~~G~i~~v~~~~~---------~~~afV~f~~~~~a~~a 334 (413)
........+.+|+|.||... + ..++|+++|++||.|++|.|.+. .|++||+|.+.++|.+|
T Consensus 401 ~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A 480 (509)
T TIGR01642 401 ILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKA 480 (509)
T ss_pred hccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHH
Confidence 01112345788999999532 1 23689999999999999999753 47999999999999999
Q ss_pred HHHhcCceeCCeeEEEEeccC
Q 015091 335 LRMLNGTQLGGQNIRLSWGRS 355 (413)
Q Consensus 335 ~~~l~~~~~~g~~l~v~~~~~ 355 (413)
+..|||..|+|+.|.|.|...
T Consensus 481 ~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 481 MEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHcCCCEECCeEEEEEEeCH
Confidence 999999999999999999654
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.6e-36 Score=289.57 Aligned_cols=174 Identities=17% Similarity=0.324 Sum_probs=153.1
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeee
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 158 (413)
...++|||+||++++++++|+++|+.||.|.+|++++|+.+|+++|||||+|.+.++|++|++.|||..+.++.+.+...
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999998776665432
Q ss_pred eccCCCC-----CCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHH
Q 015091 159 WASFGAG-----EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233 (413)
Q Consensus 159 ~~~~~~~-----~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~ 233 (413)
....... ........++|||+||+.++++++|+++| +.||.|.++++.++..+++++|||||+|.+.++|.+|+
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lF-s~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI 263 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVF-EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 263 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHH-hhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHH
Confidence 1111100 01122345789999999999999999999 89999999999999989999999999999999999999
Q ss_pred HhhCCccccCcceEeccCCC
Q 015091 234 TEMNGVFCSTRPMRIGPATN 253 (413)
Q Consensus 234 ~~l~~~~~~g~~i~v~~~~~ 253 (413)
+.||+..++|+.|+|.++..
T Consensus 264 ~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 264 ASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred HHhCCCeeCCeEEEEEecCC
Confidence 99999999999999988775
No 13
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.8e-37 Score=268.73 Aligned_cols=277 Identities=23% Similarity=0.449 Sum_probs=229.4
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCC-cCCCCCcce
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGT-PMPNGEQNF 155 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~-~~~~~~~~~ 155 (413)
++.+.-+|||+-||..++|+||+++|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+..|++. .+.|....|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 3467788999999999999999999999999999999999999999999999999999999999998774 577877888
Q ss_pred eeeeccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHh
Q 015091 156 RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (413)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~ 235 (413)
.+.++.. ++.+-..+++|||+-|++.++|.+++++| ++||.|++|.|+++. .+.+||||||.|.+.+.|..||+.
T Consensus 110 qvk~Ad~---E~er~~~e~KLFvg~lsK~~te~evr~iF-s~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika 184 (510)
T KOG0144|consen 110 QVKYADG---ERERIVEERKLFVGMLSKQCTENEVREIF-SRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKA 184 (510)
T ss_pred eecccch---hhhccccchhhhhhhccccccHHHHHHHH-HhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHh
Confidence 8876642 33333557899999999999999999999 899999999999997 889999999999999999999999
Q ss_pred hCCcc-cc--CcceEeccCCCCCccCCCccCC------------------------------------------------
Q 015091 236 MNGVF-CS--TRPMRIGPATNKKTVSGQQQYP------------------------------------------------ 264 (413)
Q Consensus 236 l~~~~-~~--g~~i~v~~~~~~~~~~~~~~~~------------------------------------------------ 264 (413)
||+.. +. ..+|.|+|++.++.+..+....
T Consensus 185 ~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~ 264 (510)
T KOG0144|consen 185 LNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLP 264 (510)
T ss_pred hccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCccccccc
Confidence 99855 43 4788999998876655332000
Q ss_pred -------------------------------C------Cc----------------------------------------
Q 015091 265 -------------------------------K------AS---------------------------------------- 267 (413)
Q Consensus 265 -------------------------------~------~~---------------------------------------- 267 (413)
. ..
T Consensus 265 ~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~ 344 (510)
T KOG0144|consen 265 PLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPAN 344 (510)
T ss_pred CCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchh
Confidence 0 00
Q ss_pred ccC-----------------------------------------------------------------cccccCCCCCCC
Q 015091 268 YQN-----------------------------------------------------------------SQVAQSDDDPNN 282 (413)
Q Consensus 268 ~~~-----------------------------------------------------------------~~~~~~~~~~~~ 282 (413)
+.. .........+..
T Consensus 345 ~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeG 424 (510)
T KOG0144|consen 345 YNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEG 424 (510)
T ss_pred cccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCc
Confidence 000 000000022456
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCC
Q 015091 283 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 356 (413)
Q Consensus 283 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 356 (413)
..|||.+||.+.-+.||...|..||.|.+.++..+ +.|+||.|++..+|..||..|||..|+.++|+|.+.+++
T Consensus 425 anlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 425 ANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDR 504 (510)
T ss_pred cceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeecc
Confidence 78999999999999999999999999987776543 679999999999999999999999999999999998765
Q ss_pred CC
Q 015091 357 SN 358 (413)
Q Consensus 357 ~~ 358 (413)
.+
T Consensus 505 ~n 506 (510)
T KOG0144|consen 505 NN 506 (510)
T ss_pred CC
Confidence 43
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.6e-35 Score=264.48 Aligned_cols=273 Identities=21% Similarity=0.361 Sum_probs=219.4
Q ss_pred ceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeeecc
Q 015091 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (413)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~ 161 (413)
.||||++||++++.++|.++|+.+|.|..|.++.++.++.++||+||.|.-.++++.|+..+++..+.++.+.+.+....
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999999999988999999999999999999999999999997766655543322
Q ss_pred CCCC----------CC--------CC--CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEE
Q 015091 162 FGAG----------EK--------RD--DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFV 221 (413)
Q Consensus 162 ~~~~----------~~--------~~--~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv 221 (413)
..+. ++ .. ..+..+|.|+||||.+.+.+|..+| +.||.|..|.|.+.. .|+-.|||||
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vF-s~~G~V~Ei~IP~k~-dgklcGFaFV 163 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVF-SNFGKVVEIVIPRKK-DGKLCGFAFV 163 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHH-hhcceEEEEEcccCC-CCCccceEEE
Confidence 1111 00 01 2236789999999999999999999 999999999998665 5666699999
Q ss_pred EeCCHHHHHHHHHhhCCccccCcceEeccCCCCCccCCCcc----------------C----CCC-------------cc
Q 015091 222 RFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ----------------Y----PKA-------------SY 268 (413)
Q Consensus 222 ~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~----------------~----~~~-------------~~ 268 (413)
.|.+..+|..|++.+|+..|+||+|-|.|+..+..+..... . ... ..
T Consensus 164 ~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeE 243 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEE 243 (678)
T ss_pred EEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccc
Confidence 99999999999999999999999999999988765543110 0 000 00
Q ss_pred --c--------------------Ccc-ccc------------CCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEE
Q 015091 269 --Q--------------------NSQ-VAQ------------SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVK 313 (413)
Q Consensus 269 --~--------------------~~~-~~~------------~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~ 313 (413)
. ... +.. .+......+|||+||++++++|+|.++|++||.|.++.
T Consensus 244 e~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~ 323 (678)
T KOG0127|consen 244 ETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAI 323 (678)
T ss_pred cccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEE
Confidence 0 000 000 00111237999999999999999999999999999988
Q ss_pred eeC------CCcEEEEEecCHHHHHHHHHHh-----cC-ceeCCeeEEEEeccCC
Q 015091 314 IPA------GKRCGFVQFADRSCAEEALRML-----NG-TQLGGQNIRLSWGRSP 356 (413)
Q Consensus 314 ~~~------~~~~afV~f~~~~~a~~a~~~l-----~~-~~~~g~~l~v~~~~~~ 356 (413)
|.. ++|+|||.|.+..+|..||... .| ..|+||.|.|..+..+
T Consensus 324 iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 324 IVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred EEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccch
Confidence 854 3799999999999999999976 23 5689999999987654
No 15
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=2.4e-34 Score=261.77 Aligned_cols=170 Identities=28% Similarity=0.479 Sum_probs=152.0
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEe
Q 015091 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 248 (413)
.....++|||++|++++++++|+++| +.||.|++|+|+++..+++++|||||+|.+.++|++|+++|++..+.++.|+|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF-~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALF-RTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 45567899999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEE
Q 015091 249 GPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGF 322 (413)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~af 322 (413)
.++..... ....++|||+||+.++++++|+++|++||.|+++.|.++ +++||
T Consensus 182 ~~a~p~~~----------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aF 239 (346)
T TIGR01659 182 SYARPGGE----------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAF 239 (346)
T ss_pred eccccccc----------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEE
Confidence 98765321 113467999999999999999999999999999999765 48999
Q ss_pred EEecCHHHHHHHHHHhcCceeCC--eeEEEEeccCCCCCCC
Q 015091 323 VQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQA 361 (413)
Q Consensus 323 V~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~~~~~~ 361 (413)
|+|++.++|++||+.||+..+.+ +.|+|+|++.......
T Consensus 240 V~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~~~ 280 (346)
T TIGR01659 240 VRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGKAKA 280 (346)
T ss_pred EEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccccccc
Confidence 99999999999999999999866 6899999987655443
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=2.3e-32 Score=248.92 Aligned_cols=172 Identities=26% Similarity=0.470 Sum_probs=153.1
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
.....++|||+|||+++|+++|+++|+.||.|++|+|++|+.+++++|||||+|.++++|++|++.||+..+.++. ++
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~--i~ 180 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKR--LK 180 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCce--ee
Confidence 4556789999999999999999999999999999999999999999999999999999999999999999997654 55
Q ss_pred eeeccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhh
Q 015091 157 LNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (413)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l 236 (413)
+.++... ......++|||+||+.++++++|+++| +.||+|+.++++.+..++++++||||+|.+.++|++||+.|
T Consensus 181 V~~a~p~----~~~~~~~~lfV~nLp~~vtee~L~~~F-~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 181 VSYARPG----GESIKDTNLYVTNLPRTITDDQLDTIF-GKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred eeccccc----ccccccceeEEeCCCCcccHHHHHHHH-HhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 5554332 123346789999999999999999999 89999999999999999999999999999999999999999
Q ss_pred CCccccC--cceEeccCCCCC
Q 015091 237 NGVFCST--RPMRIGPATNKK 255 (413)
Q Consensus 237 ~~~~~~g--~~i~v~~~~~~~ 255 (413)
++..+.+ +.|+|.++....
T Consensus 256 ng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 256 NNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred CCCccCCCceeEEEEECCccc
Confidence 9998876 678888877643
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.4e-32 Score=245.91 Aligned_cols=239 Identities=29% Similarity=0.517 Sum_probs=212.3
Q ss_pred ceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeeecc
Q 015091 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (413)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~ 161 (413)
..|||+ +++|+.+|.++|+.+|.|+++++++|- | +.|||||.|.++++|++|++.+|...+. ++.+++.|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~--~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLK--GKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccC--CcEEEeehhc
Confidence 468898 899999999999999999999999998 6 9999999999999999999999999995 4677888876
Q ss_pred CCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccc
Q 015091 162 FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (413)
Q Consensus 162 ~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~ 241 (413)
..... +||.||+.+++..+|.+.| +.||+|.+|++..+. .| ++|| ||+|+++++|.+|++.+||..+
T Consensus 74 rd~~~---------~~i~nl~~~~~~~~~~d~f-~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll 140 (369)
T KOG0123|consen 74 RDPSL---------VFIKNLDESIDNKSLYDTF-SEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLL 140 (369)
T ss_pred cCCce---------eeecCCCcccCcHHHHHHH-HhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCccc
Confidence 55333 9999999999999999999 999999999999987 45 8999 9999999999999999999999
Q ss_pred cCcceEeccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC----
Q 015091 242 STRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---- 317 (413)
Q Consensus 242 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~---- 317 (413)
.+..|.|.....+........ . ....-..++|.++..++++++|+++|..+|.|.++.+..+
T Consensus 141 ~~kki~vg~~~~~~er~~~~~-------------~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~ 206 (369)
T KOG0123|consen 141 NGKKIYVGLFERKEEREAPLG-------------E-YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGK 206 (369)
T ss_pred CCCeeEEeeccchhhhccccc-------------c-hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCC
Confidence 999999988877765443211 1 2234467899999999999999999999999999999753
Q ss_pred -CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccC
Q 015091 318 -KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355 (413)
Q Consensus 318 -~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 355 (413)
++++||.|++.++|..|+..|++..+++..+.|..+..
T Consensus 207 ~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 207 SKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred CCCccceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 78999999999999999999999999999999887665
No 18
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=2.3e-31 Score=243.36 Aligned_cols=264 Identities=25% Similarity=0.461 Sum_probs=219.9
Q ss_pred eeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeeeccC
Q 015091 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASF 162 (413)
Q Consensus 83 ~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~~ 162 (413)
.|||.||+.++|..+|.++|+.||.|.+|++.++. .| ++|| ||+|+++++|.+|++.+||..+.++.+.+-+.....
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 39999999999999999999999999999999997 35 9999 999999999999999999999988777766554432
Q ss_pred CCCCCC--CCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCcc
Q 015091 163 GAGEKR--DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (413)
Q Consensus 163 ~~~~~~--~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~ 240 (413)
...... ....-..+++.++..+++++.|.++| ..+|.|.++.++.+. .+++++|+||.|.+.++|..|++.|++..
T Consensus 155 er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f-~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~ 232 (369)
T KOG0123|consen 155 EREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLF-SAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKI 232 (369)
T ss_pred hhcccccchhhhhhhhheeccccccchHHHHHhh-cccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCc
Confidence 222111 22334679999999999999999999 899999999999987 66699999999999999999999999999
Q ss_pred ccCcceEeccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeC----
Q 015091 241 CSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---- 316 (413)
Q Consensus 241 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~---- 316 (413)
+.+..+.|..+..+.......... ................|||.||+..++++.|+++|+.||.|.++.+..
T Consensus 233 ~~~~~~~V~~aqkk~e~~~~l~~~----~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g 308 (369)
T KOG0123|consen 233 FGDKELYVGRAQKKSEREAELKRK----FEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENG 308 (369)
T ss_pred CCccceeecccccchhhHHHHhhh----hHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCC
Confidence 999999998887733222110000 000111222344567899999999999999999999999999998865
Q ss_pred -CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccC
Q 015091 317 -GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355 (413)
Q Consensus 317 -~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 355 (413)
.+|++||+|.+.++|.+|+..+++..++++.|.|.++..
T Consensus 309 ~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr 348 (369)
T KOG0123|consen 309 KSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQR 348 (369)
T ss_pred CccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhh
Confidence 389999999999999999999999999999999999873
No 19
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.9e-30 Score=212.22 Aligned_cols=165 Identities=30% Similarity=0.561 Sum_probs=153.6
Q ss_pred cceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeeec
Q 015091 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (413)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~ 160 (413)
.--|||+.|...++.++|++.|..||+|.+++|++|..|+++|||+||.|.+.++|++||..+||..| .++.||-+|+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl--G~R~IRTNWA 139 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL--GRRTIRTNWA 139 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee--ccceeecccc
Confidence 44699999999999999999999999999999999999999999999999999999999999999999 6789999999
Q ss_pred cCCCCCC------------CCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHH
Q 015091 161 SFGAGEK------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228 (413)
Q Consensus 161 ~~~~~~~------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~ 228 (413)
.++..+. .....+++||||||+.-+++++|++.| +.||.|.+|++.++ +||+||.|.+.|+
T Consensus 140 TRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~F-s~fG~I~EVRvFk~------qGYaFVrF~tkEa 212 (321)
T KOG0148|consen 140 TRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTF-SPFGPIQEVRVFKD------QGYAFVRFETKEA 212 (321)
T ss_pred ccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhc-ccCCcceEEEEecc------cceEEEEecchhh
Confidence 8886443 235678899999999999999999999 99999999999987 7999999999999
Q ss_pred HHHHHHhhCCccccCcceEeccCCCC
Q 015091 229 QLRAMTEMNGVFCSTRPMRIGPATNK 254 (413)
Q Consensus 229 a~~a~~~l~~~~~~g~~i~v~~~~~~ 254 (413)
|..||..+|+..+.|..+++.|.+..
T Consensus 213 AahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 213 AAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred HHHHHHHhcCceeCceEEEEeccccC
Confidence 99999999999999999999997664
No 20
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=7.6e-30 Score=219.38 Aligned_cols=269 Identities=17% Similarity=0.295 Sum_probs=211.7
Q ss_pred cceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeeec
Q 015091 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (413)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~ 160 (413)
.|+|||+.+.+++.|+.|+..|..||.|.+|.+.+|+.|++++|||||+|+-+|.|+.|++.+||.++.++++++.. .
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr--P 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR--P 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC--C
Confidence 58999999999999999999999999999999999999999999999999999999999999999999776555442 2
Q ss_pred cCCCCC-------CCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHH
Q 015091 161 SFGAGE-------KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233 (413)
Q Consensus 161 ~~~~~~-------~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~ 233 (413)
..-... ..+...-++|||..+..+.+++||+..| +.||+|..|.+-++...+.++||+|++|.+..+...|+
T Consensus 191 sNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVF-EAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 191 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVF-EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHH-HhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 211111 0223445789999999999999999999 89999999999999988899999999999999999999
Q ss_pred HhhCCccccCcceEeccCCCCCccCCCccCCC------------------------------------------------
Q 015091 234 TEMNGVFCSTRPMRIGPATNKKTVSGQQQYPK------------------------------------------------ 265 (413)
Q Consensus 234 ~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~------------------------------------------------ 265 (413)
..||-+.++|..++|..+.............+
T Consensus 270 asMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~ 349 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPL 349 (544)
T ss_pred hhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCC
Confidence 99999999999999987654321110000000
Q ss_pred -----C-------------------------------cc-------------------------cCc--------cccc-
Q 015091 266 -----A-------------------------------SY-------------------------QNS--------QVAQ- 275 (413)
Q Consensus 266 -----~-------------------------------~~-------------------------~~~--------~~~~- 275 (413)
. .. ... -...
T Consensus 350 ~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G 429 (544)
T KOG0124|consen 350 GTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISG 429 (544)
T ss_pred CCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccC
Confidence 0 00 000 0000
Q ss_pred ----------CCCCCCCceEEEecC--CCCC---CHHHHHHHHhcCCCeEEEEeeCCCc----------EEEEEecCHHH
Q 015091 276 ----------SDDDPNNTTVFVGNL--DSIV---TDEHLRELFSQYGQLVHVKIPAGKR----------CGFVQFADRSC 330 (413)
Q Consensus 276 ----------~~~~~~~~~l~v~nl--p~~~---~~~~l~~~f~~~G~i~~v~~~~~~~----------~afV~f~~~~~ 330 (413)
......++.|.++|. |.++ -+.+|++.|.+||.|.+|.|...+. .-||+|+...+
T Consensus 430 ~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e 509 (544)
T KOG0124|consen 430 SSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASE 509 (544)
T ss_pred ccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhH
Confidence 001134677788887 3344 3467899999999999999965432 46999999999
Q ss_pred HHHHHHHhcCceeCCeeEEEEe
Q 015091 331 AEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 331 a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
+.+|..+|+|+.|+||++..+.
T Consensus 510 ~~rak~ALdGRfFgGr~VvAE~ 531 (544)
T KOG0124|consen 510 THRAKQALDGRFFGGRKVVAEV 531 (544)
T ss_pred HHHHHHhhccceecCceeehhh
Confidence 9999999999999999988765
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=2.3e-29 Score=240.62 Aligned_cols=176 Identities=19% Similarity=0.430 Sum_probs=151.5
Q ss_pred CCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccC
Q 015091 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (413)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 251 (413)
..++|||+||++++++++|+++| +.||.|.+|+++.+..+++++|||||+|.+.++|.+|++.||+..+.|+.|+|.+.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF-~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAF-DPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHH-HccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45689999999999999999999 89999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEe
Q 015091 252 TNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQF 325 (413)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f 325 (413)
......... ...........++|||+||+.++++++|+++|+.||.|.++++.++ ||||||+|
T Consensus 185 ~~~p~a~~~-----------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeF 253 (612)
T TIGR01645 185 SNMPQAQPI-----------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEY 253 (612)
T ss_pred ccccccccc-----------cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEE
Confidence 432211100 0000112234578999999999999999999999999999999653 78999999
Q ss_pred cCHHHHHHHHHHhcCceeCCeeEEEEeccCCCCC
Q 015091 326 ADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 359 (413)
Q Consensus 326 ~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 359 (413)
.+.++|.+|+..||+..|+|+.|+|.++..+...
T Consensus 254 e~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 254 NNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred CCHHHHHHHHHHhCCCeeCCeEEEEEecCCCccc
Confidence 9999999999999999999999999999876544
No 22
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.97 E-value=1.3e-29 Score=230.14 Aligned_cols=280 Identities=19% Similarity=0.330 Sum_probs=218.0
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcce
Q 015091 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (413)
Q Consensus 76 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~ 155 (413)
...++.++||+.-|.-.++..+|.++|+.+|.|.+|+++.|+.+++++|.|||+|.+.+++..|+ .|.|..+.+-.+.+
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEe
Confidence 35677899999999999999999999999999999999999999999999999999999999999 78999887766655
Q ss_pred eeeeccCCCC--------CCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHH
Q 015091 156 RLNWASFGAG--------EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227 (413)
Q Consensus 156 ~~~~~~~~~~--------~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~ 227 (413)
...-+..... .+.-..+-..|||+||..++++++|+..| +.||.|+.|.+.++..+|.++||+||+|.+.+
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~if-epfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIF-EPFGKIENVQLTKDSETGRSKGFGFITFVNKE 331 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhc-cCcccceeeeeccccccccccCcceEEEecHH
Confidence 5543321110 01112222349999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHhhCCccccCcceEeccCCCCCccCCCcc------------C-----C-----------------CC-------
Q 015091 228 EQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ------------Y-----P-----------------KA------- 266 (413)
Q Consensus 228 ~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~------------~-----~-----------------~~------- 266 (413)
+|.+|++.||+..+.|+.|+|.....+........ . . ..
T Consensus 332 ~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~ 411 (549)
T KOG0147|consen 332 DARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLL 411 (549)
T ss_pred HHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHh
Confidence 99999999999999999999866544332221100 0 0 00
Q ss_pred -c-------c--------cCcccccCCCCCCCceEEEecCCCCC--C--------HHHHHHHHhcCCCeEEEEeeCCC-c
Q 015091 267 -S-------Y--------QNSQVAQSDDDPNNTTVFVGNLDSIV--T--------DEHLRELFSQYGQLVHVKIPAGK-R 319 (413)
Q Consensus 267 -~-------~--------~~~~~~~~~~~~~~~~l~v~nlp~~~--~--------~~~l~~~f~~~G~i~~v~~~~~~-~ 319 (413)
. . .............+.++.|.|+=... | .|||.+.+.+||.|.+|.+.++. |
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g 491 (549)
T KOG0147|consen 412 LAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAG 491 (549)
T ss_pred ccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCc
Confidence 0 0 00000001111345566677662211 1 27888999999999999998775 9
Q ss_pred EEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCC
Q 015091 320 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 357 (413)
Q Consensus 320 ~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 357 (413)
+.||.|.+.+.|..|+.+|||.+|.|+.|..+|-....
T Consensus 492 ~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~ 529 (549)
T KOG0147|consen 492 CVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLER 529 (549)
T ss_pred eEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehhh
Confidence 99999999999999999999999999999999865443
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=2.9e-28 Score=232.95 Aligned_cols=221 Identities=17% Similarity=0.220 Sum_probs=168.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccCc-eEEEEEEe-cCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIR-NKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~-v~~~~~~~-~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
.+.++|||+|||.++++++|.++|++++. ++++.+.. ....++++|||||+|.+.++|..|++.|+...+......|+
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 35789999999999999999999999974 55554443 23456789999999999999999999887654433456777
Q ss_pred eeeccCCCCCCCC-CCCCceEEecCCCCCCCHHHHHHHHhhhC--CCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHH
Q 015091 157 LNWASFGAGEKRD-DTPDHTIFVGDLAADVTDYMLQETFRARY--PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233 (413)
Q Consensus 157 ~~~~~~~~~~~~~-~~~~~~l~v~~lp~~~~~~~l~~~f~~~~--g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~ 233 (413)
++|+........+ ....++|||+||+.++++++|+++| +.| |+|+.|.++ ++||||+|.+.++|++|+
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F-~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSF-SEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHH-HhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHH
Confidence 8887655433322 2345789999999999999999999 899 999988765 569999999999999999
Q ss_pred HhhCCccccCcceEeccCCCCCccCCCccC------CCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCC
Q 015091 234 TEMNGVFCSTRPMRIGPATNKKTVSGQQQY------PKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYG 307 (413)
Q Consensus 234 ~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G 307 (413)
+.||+..|+|+.|+|.++............ ..................+.+++++|++++.+++-+.++|..+|
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g 366 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPG 366 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCc
Confidence 999999999999999999775433110000 00000111112233445678999999999999999999998887
Q ss_pred C
Q 015091 308 Q 308 (413)
Q Consensus 308 ~ 308 (413)
.
T Consensus 367 ~ 367 (578)
T TIGR01648 367 P 367 (578)
T ss_pred c
Confidence 4
No 24
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=2e-28 Score=229.30 Aligned_cols=175 Identities=26% Similarity=0.449 Sum_probs=155.1
Q ss_pred CcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeee
Q 015091 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (413)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 159 (413)
..++|||+|||.++++++|+++|+.||.|..++++.+..++.++|||||+|.+.++|++|++.|||..+.+....+++.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999998889999999999999999999999999999988777777776
Q ss_pred ccCCCCCC------------------------------------------------------------------------
Q 015091 160 ASFGAGEK------------------------------------------------------------------------ 167 (413)
Q Consensus 160 ~~~~~~~~------------------------------------------------------------------------ 167 (413)
+.......
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 54222000
Q ss_pred ----------------CCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHH
Q 015091 168 ----------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231 (413)
Q Consensus 168 ----------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~ 231 (413)
.......+|||+||+.++++++|+++| +.||.|.+++++++..++.++|||||+|.+.++|.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F-~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLF-GPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHH-HhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 001112369999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHhhCCccccCcceEeccCCCCC
Q 015091 232 AMTEMNGVFCSTRPMRIGPATNKK 255 (413)
Q Consensus 232 a~~~l~~~~~~g~~i~v~~~~~~~ 255 (413)
|++.|||..|+|+.|+|.+...+.
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCC
Confidence 999999999999999999988764
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=7.4e-29 Score=217.97 Aligned_cols=173 Identities=25% Similarity=0.485 Sum_probs=152.7
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCcc-cc--Cc
Q 015091 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-CS--TR 244 (413)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~-~~--g~ 244 (413)
..+...-++||+-||+.++|.||+++| +.||.|.+|.+++|+.++.++|||||.|.+.++|.+|+.+|++.+ +. ..
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lF-e~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELF-EKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHH-HHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 345666789999999999999999999 899999999999999999999999999999999999999999865 43 46
Q ss_pred ceEeccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-----Cc
Q 015091 245 PMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KR 319 (413)
Q Consensus 245 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-----~~ 319 (413)
.|.|++++...+.. ...++|||+-|+..++|+||+++|++||.|+++.|.++ ||
T Consensus 108 pvqvk~Ad~E~er~---------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRG 166 (510)
T KOG0144|consen 108 PVQVKYADGERERI---------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRG 166 (510)
T ss_pred ceeecccchhhhcc---------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccc
Confidence 78888887754432 23578999999999999999999999999999999875 89
Q ss_pred EEEEEecCHHHHHHHHHHhcCce-eCCe--eEEEEeccCCCCCCCC
Q 015091 320 CGFVQFADRSCAEEALRMLNGTQ-LGGQ--NIRLSWGRSPSNKQAQ 362 (413)
Q Consensus 320 ~afV~f~~~~~a~~a~~~l~~~~-~~g~--~l~v~~~~~~~~~~~~ 362 (413)
||||+|++.+.|..||+.|||.. +.|+ .|.|+|+.++..+..+
T Consensus 167 caFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~ 212 (510)
T KOG0144|consen 167 CAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGK 212 (510)
T ss_pred eeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHH
Confidence 99999999999999999999976 7776 7999999987665433
No 26
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.95 E-value=2.3e-27 Score=221.34 Aligned_cols=258 Identities=21% Similarity=0.355 Sum_probs=203.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
.+..+.|+|+|||..+..++|..+|..||.|..|.+...- --|+|+|.++.+|.+|...|....+... .+.+
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G------~~aiv~fl~p~eAr~Afrklaysr~k~~--plyl 453 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGG------TGAIVEFLNPLEARKAFRKLAYSRFKSA--PLYL 453 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCccc------ceeeeeecCccchHHHHHHhchhhhccC--cccc
Confidence 3455789999999999999999999999999999554321 2499999999999999999888776332 2222
Q ss_pred eeccCCC----------------C----C-------------CC-------------CCCCCceEEecCCCCCCCHHHHH
Q 015091 158 NWASFGA----------------G----E-------------KR-------------DDTPDHTIFVGDLAADVTDYMLQ 191 (413)
Q Consensus 158 ~~~~~~~----------------~----~-------------~~-------------~~~~~~~l~v~~lp~~~~~~~l~ 191 (413)
.|+.... . . .. .....++|||.||.++++.+++.
T Consensus 454 e~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~ 533 (725)
T KOG0110|consen 454 EWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLE 533 (725)
T ss_pred ccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHH
Confidence 2221000 0 0 00 01112349999999999999999
Q ss_pred HHHhhhCCCcceeEEEEcCCC---CCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCCCCccCCCccCCCCcc
Q 015091 192 ETFRARYPSTKGAKVVIDRLT---GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASY 268 (413)
Q Consensus 192 ~~f~~~~g~v~~~~~~~~~~~---g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~ 268 (413)
..| ...|.|.++.|...+.. -.+.|||||+|.+.++|..|++.|+++.++|+.|.|.++..+......
T Consensus 534 ~~F-~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~g-------- 604 (725)
T KOG0110|consen 534 DLF-SKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVG-------- 604 (725)
T ss_pred HHH-HhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccc--------
Confidence 999 77999999988654321 136699999999999999999999999999999999999833222111
Q ss_pred cCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCce
Q 015091 269 QNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQ 342 (413)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~ 342 (413)
.........++|+|+|||+..+..+|+++|..||.|.+|+|++. +|||||+|-+..+|.+|+..|..+.
T Consensus 605 -----K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STH 679 (725)
T KOG0110|consen 605 -----KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTH 679 (725)
T ss_pred -----cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccc
Confidence 11222334689999999999999999999999999999999764 8899999999999999999999999
Q ss_pred eCCeeEEEEeccCCC
Q 015091 343 LGGQNIRLSWGRSPS 357 (413)
Q Consensus 343 ~~g~~l~v~~~~~~~ 357 (413)
+-||+|.++|++...
T Consensus 680 lyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 680 LYGRRLVLEWAKSDN 694 (725)
T ss_pred eechhhheehhccch
Confidence 999999999998743
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=1.1e-26 Score=224.99 Aligned_cols=174 Identities=29% Similarity=0.534 Sum_probs=149.9
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
....++|||+||+.++++++|+++| +.||.|.+|.++.+..+++++|||||+|.+.++|.+|+ .|++..+.|+.|.|.
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F-~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFF-SKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQ 163 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEe
Confidence 3457899999999999999999999 89999999999999999999999999999999999999 699999999999998
Q ss_pred cCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeC------CCcEEEE
Q 015091 250 PATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA------GKRCGFV 323 (413)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~------~~~~afV 323 (413)
++........... .......+..++|||+||+..+++++|+++|+.||.|..|.+.. .+++|||
T Consensus 164 ~~~~~~~~~~~~~----------~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV 233 (457)
T TIGR01622 164 SSQAEKNRAAKAA----------THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFI 233 (457)
T ss_pred ecchhhhhhhhcc----------cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEE
Confidence 7654332221100 00111123478999999999999999999999999999999974 3689999
Q ss_pred EecCHHHHHHHHHHhcCceeCCeeEEEEeccC
Q 015091 324 QFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355 (413)
Q Consensus 324 ~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 355 (413)
+|.+.++|.+|+..|+|..|.|+.|+|.|+..
T Consensus 234 ~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 234 QFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred EECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 99999999999999999999999999999874
No 28
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.95 E-value=1.9e-25 Score=196.66 Aligned_cols=166 Identities=17% Similarity=0.320 Sum_probs=133.9
Q ss_pred CcceeeecCCCCCCCHHHHHHHhh-ccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeee
Q 015091 80 EIRTLWIGDLQYWMDETYLNTCFA-HTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (413)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 158 (413)
..|.+||.|||+++.+.+|+++|. +.|+|+-|.+..|. +|+++|||.|+|+++|.+++|++.||...+.++.+.++-+
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 456699999999999999999995 67899999999996 7999999999999999999999999998887776655533
Q ss_pred ecc----------------------------CC---------------C----CCC------------------------
Q 015091 159 WAS----------------------------FG---------------A----GEK------------------------ 167 (413)
Q Consensus 159 ~~~----------------------------~~---------------~----~~~------------------------ 167 (413)
... .+ . ...
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 220 00 0 000
Q ss_pred --------CCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCc
Q 015091 168 --------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (413)
Q Consensus 168 --------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~ 239 (413)
-......++||.||...+..+.|++.| .-.|.|..+.+-.++ .|.++|++.++|...-+|..||..+++.
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvf-gmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVF-GMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHh-ccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhccC
Confidence 002234579999999999999999999 889999999998887 5689999999999999999999888865
Q ss_pred cccCcceEe
Q 015091 240 FCSTRPMRI 248 (413)
Q Consensus 240 ~~~g~~i~v 248 (413)
-+..+...+
T Consensus 280 g~~~~~~~~ 288 (608)
T KOG4212|consen 280 GLFDRRMTV 288 (608)
T ss_pred CCcccccee
Confidence 544444433
No 29
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=4.6e-26 Score=187.55 Aligned_cols=168 Identities=26% Similarity=0.520 Sum_probs=150.6
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
+...++|.|.-||.++|+++++.+| ...|+|++|++++|+.+|.+-||+||.|.+.++|++|+..|||..+..+.|+|+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF-~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLF-GSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHh-hcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 4556789999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeC------CCcEEEE
Q 015091 250 PATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA------GKRCGFV 323 (413)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~------~~~~afV 323 (413)
++.+... ......|||.+||..+|..||+++|++||.|.-.+|.. +||.+||
T Consensus 117 yARPSs~----------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFi 174 (360)
T KOG0145|consen 117 YARPSSD----------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFI 174 (360)
T ss_pred eccCChh----------------------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEE
Confidence 9987543 23446799999999999999999999999887666643 3899999
Q ss_pred EecCHHHHHHHHHHhcCceeCCe--eEEEEeccCCCCCC
Q 015091 324 QFADRSCAEEALRMLNGTQLGGQ--NIRLSWGRSPSNKQ 360 (413)
Q Consensus 324 ~f~~~~~a~~a~~~l~~~~~~g~--~l~v~~~~~~~~~~ 360 (413)
+|+..++|+.||+.|||.+-.|+ .|.|+|+..+..+.
T Consensus 175 RFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t 213 (360)
T KOG0145|consen 175 RFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKT 213 (360)
T ss_pred EecchhHHHHHHHhccCCCCCCCCCCeEEEecCCccccc
Confidence 99999999999999999997665 79999998876543
No 30
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=6.3e-26 Score=177.20 Aligned_cols=174 Identities=28% Similarity=0.483 Sum_probs=152.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
.+...||||+||+..++++-|.++|-++|.|+++++.+|+.+...+|||||+|.++|+|+-|++.||...+.++ .+++
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgr--pIrv 83 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGR--PIRV 83 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCc--eeEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999997777554 5555
Q ss_pred eeccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcce-eEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhh
Q 015091 158 NWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG-AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (413)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~-~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l 236 (413)
+.++ ..........++||+||.+.+++..|.+.| +.||.+.. -.++++..+|.+++|+||.|++.+.+.+|++.+
T Consensus 84 ~kas---~~~~nl~vganlfvgNLd~~vDe~~L~dtF-safG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ 159 (203)
T KOG0131|consen 84 NKAS---AHQKNLDVGANLFVGNLDPEVDEKLLYDTF-SAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSM 159 (203)
T ss_pred Eecc---cccccccccccccccccCcchhHHHHHHHH-HhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHh
Confidence 5444 222233445789999999999999999999 89998765 478889889999999999999999999999999
Q ss_pred CCccccCcceEeccCCCCCcc
Q 015091 237 NGVFCSTRPMRIGPATNKKTV 257 (413)
Q Consensus 237 ~~~~~~g~~i~v~~~~~~~~~ 257 (413)
++..+.++.++|.++..+...
T Consensus 160 ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 160 NGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred ccchhcCCceEEEEEEecCCC
Confidence 999999999999998766544
No 31
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.93 E-value=1.2e-23 Score=189.04 Aligned_cols=268 Identities=18% Similarity=0.244 Sum_probs=185.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
..+...|.+++|||++|++||+++|+.+ .|.++.+.+ .+|+..|-|||+|.+.|++++|+++ +-..+ ..+-|++
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~m--g~RYIEV 80 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESM--GHRYIEV 80 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHh--CCceEEE
Confidence 4456678999999999999999999999 577766665 4699999999999999999999974 44444 2344444
Q ss_pred eeccCCCC-------CCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHH
Q 015091 158 NWASFGAG-------EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQL 230 (413)
Q Consensus 158 ~~~~~~~~-------~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~ 230 (413)
..+..... ..........|-+++||+.|++++|.++| +..-.+....++.....+++.|-|||.|++.+.|+
T Consensus 81 f~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FF-aGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 81 FTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFF-AGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAE 159 (510)
T ss_pred EccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHh-cCCcccccceeeeccCCCCcccceEEEecCHHHHH
Confidence 33321111 11122456789999999999999999999 65544444232333347789999999999999999
Q ss_pred HHHHhhCCccccCcceEeccCCCCCccCCC-------------------cc---C---CC--------------------
Q 015091 231 RAMTEMNGVFCSTRPMRIGPATNKKTVSGQ-------------------QQ---Y---PK-------------------- 265 (413)
Q Consensus 231 ~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~-------------------~~---~---~~-------------------- 265 (413)
+|+ .-+...|..+.|.|..+......... .. . ..
T Consensus 160 ~Al-~rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~ 238 (510)
T KOG4211|consen 160 IAL-GRHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSR 238 (510)
T ss_pred HHH-HHHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCcccccc
Confidence 999 45677788888877554321110000 00 0 00
Q ss_pred -----C-------------cccC--------cccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCe-EEEEeeC--
Q 015091 266 -----A-------------SYQN--------SQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL-VHVKIPA-- 316 (413)
Q Consensus 266 -----~-------------~~~~--------~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i-~~v~~~~-- 316 (413)
. .... ..............++.++||+..++.++.++|+..-.+ .+|.|..
T Consensus 239 ~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dG 318 (510)
T KOG4211|consen 239 YPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDG 318 (510)
T ss_pred CccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCC
Confidence 0 0000 000000011223678899999999999999999876444 4455543
Q ss_pred -CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEecc
Q 015091 317 -GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354 (413)
Q Consensus 317 -~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 354 (413)
..+.|+|+|.+.++|..|+.+ ++..+..+-|++....
T Consensus 319 r~TGEAdveF~t~edav~Amsk-d~anm~hrYVElFln~ 356 (510)
T KOG4211|consen 319 RATGEADVEFATGEDAVGAMGK-DGANMGHRYVELFLNG 356 (510)
T ss_pred ccCCcceeecccchhhHhhhcc-CCcccCcceeeecccC
Confidence 378999999999999999996 7788888888876643
No 32
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1e-24 Score=192.91 Aligned_cols=194 Identities=21% Similarity=0.335 Sum_probs=156.3
Q ss_pred EEcCHHHHHHHHHHhCCCcCCCCCcceeeeeccCC-----C-CCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcc
Q 015091 129 EFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFG-----A-GEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202 (413)
Q Consensus 129 ~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~ 202 (413)
...+.++|.++|.+-.|..+. +.....+ . -+.......+.||||.||.++.|++|.-+| +..|+|-
T Consensus 40 ~~~~~eaal~al~E~tgy~l~-------ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplf-EkiG~I~ 111 (506)
T KOG0117|consen 40 GVQSEEAALKALLERTGYTLV-------VENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLF-EKIGKIY 111 (506)
T ss_pred ccccHHHHHHHHHHhcCceEE-------EeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHH-Hhcccee
Confidence 344578888888665554432 1111111 0 111223456789999999999999999999 8999999
Q ss_pred eeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccc-cCcceEeccCCCCCccCCCccCCCCcccCcccccCCCCCC
Q 015091 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC-STRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPN 281 (413)
Q Consensus 203 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~-~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (413)
++++|+|+.+|.+||||||.|.+.++|++|++.||+..| .|+.|.|..+..
T Consensus 112 elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva---------------------------- 163 (506)
T KOG0117|consen 112 ELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA---------------------------- 163 (506)
T ss_pred eEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee----------------------------
Confidence 999999999999999999999999999999999999887 588888876544
Q ss_pred CceEEEecCCCCCCHHHHHHHHhcCC-CeEEEEe-------eCCCcEEEEEecCHHHHHHHHHHhcCc--eeCCeeEEEE
Q 015091 282 NTTVFVGNLDSIVTDEHLRELFSQYG-QLVHVKI-------PAGKRCGFVQFADRSCAEEALRMLNGT--QLGGQNIRLS 351 (413)
Q Consensus 282 ~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~v~~-------~~~~~~afV~f~~~~~a~~a~~~l~~~--~~~g~~l~v~ 351 (413)
+++|||+|||.+.++|+|++.|++.+ .|++|.+ .++||||||+|.|+..|..|-++|-.. ++-|..+.|+
T Consensus 164 n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVd 243 (506)
T KOG0117|consen 164 NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVD 243 (506)
T ss_pred cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceee
Confidence 47899999999999999999999987 4677776 356999999999999999999887433 3789999999
Q ss_pred eccCCCC
Q 015091 352 WGRSPSN 358 (413)
Q Consensus 352 ~~~~~~~ 358 (413)
||.+...
T Consensus 244 WAep~~e 250 (506)
T KOG0117|consen 244 WAEPEEE 250 (506)
T ss_pred ccCcccC
Confidence 9987544
No 33
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=3.8e-24 Score=193.70 Aligned_cols=183 Identities=26% Similarity=0.434 Sum_probs=154.5
Q ss_pred ceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCC
Q 015091 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (413)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 253 (413)
.||||++||++++.++|.++| +.+|.|..+.++.+..++.++||+||.|+-.+++++|++.+++..|.|+.|+|..+..
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~F-S~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFF-SYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred ceEEEecCCCccchhHHHHhh-hcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 699999999999999999999 8999999999999999999999999999999999999999999999999999999887
Q ss_pred CCccCCC-ccCCCCc---ccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-----CcEEEEE
Q 015091 254 KKTVSGQ-QQYPKAS---YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQ 324 (413)
Q Consensus 254 ~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-----~~~afV~ 324 (413)
+...... ....... ...........+.....|.|+|||+.+...+|+.+|+.||.|..|.|++. .|||||.
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~ 164 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQ 164 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEE
Confidence 6554411 1111110 00000111222333678999999999999999999999999999999864 4899999
Q ss_pred ecCHHHHHHHHHHhcCceeCCeeEEEEeccCCC
Q 015091 325 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 357 (413)
Q Consensus 325 f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 357 (413)
|.+..+|.+|+..+|+.+|+||.|-|.||..+.
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 999999999999999999999999999998754
No 34
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.91 E-value=4.2e-24 Score=167.05 Aligned_cols=168 Identities=30% Similarity=0.488 Sum_probs=147.0
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
.....+|||+||+..++++.|+++| -+.|.|.++.+.+++.+...+||||++|.++++|+-|++-|+...+.|++|+|+
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~-iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELF-IQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHH-HhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 3456799999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEE-Eee------CCCcEEE
Q 015091 250 PATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV-KIP------AGKRCGF 322 (413)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v-~~~------~~~~~af 322 (413)
.+..... ....+..|||+||...+.+..|.+.|+.||.+.+. .+. ..++++|
T Consensus 85 kas~~~~---------------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~ 143 (203)
T KOG0131|consen 85 KASAHQK---------------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGF 143 (203)
T ss_pred ecccccc---------------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeE
Confidence 8873221 11233789999999999999999999999987542 222 3478999
Q ss_pred EEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCCCC
Q 015091 323 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 359 (413)
Q Consensus 323 V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 359 (413)
|.|++.+.+.+|+..++|..+.++.+.|+++..+..+
T Consensus 144 i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 144 INYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred EechhHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 9999999999999999999999999999998865443
No 35
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.91 E-value=3.7e-23 Score=203.28 Aligned_cols=176 Identities=16% Similarity=0.263 Sum_probs=144.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
....++|||+|||..+|+++|+++|+.||.|..+.++++..+|.++|||||+|.+.++|..|++.|||..|.++.+.|+.
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999877655544
Q ss_pred eeccCCCCC----------------------CCCCCCCceEEecCCCCCC----------CHHHHHHHHhhhCCCcceeE
Q 015091 158 NWASFGAGE----------------------KRDDTPDHTIFVGDLAADV----------TDYMLQETFRARYPSTKGAK 205 (413)
Q Consensus 158 ~~~~~~~~~----------------------~~~~~~~~~l~v~~lp~~~----------~~~~l~~~f~~~~g~v~~~~ 205 (413)
......... .....++.+|+|.||.... ..++|+++| +.||.|..|.
T Consensus 372 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f-~~~G~v~~v~ 450 (509)
T TIGR01642 372 ACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEF-SKYGPLINIV 450 (509)
T ss_pred CccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHH-HhcCCeeEEE
Confidence 322111000 0012356788999985421 236789999 8999999999
Q ss_pred EEEcC---CCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCCC
Q 015091 206 VVIDR---LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254 (413)
Q Consensus 206 ~~~~~---~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 254 (413)
|.+.. .++...|++||+|.+.++|++|+..|||..|.|+.|.|.+....
T Consensus 451 i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 451 IPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred eeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 98653 34566899999999999999999999999999999999987653
No 36
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=3.9e-24 Score=179.14 Aligned_cols=148 Identities=26% Similarity=0.496 Sum_probs=138.6
Q ss_pred eEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCCC
Q 015091 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254 (413)
Q Consensus 175 ~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 254 (413)
+|||+|||.++++.+|+.+| +.||.|.+|+|+ |.|+||..++...++.||.+|++-+++|..|.|+.++.+
T Consensus 4 KLFIGNLp~~~~~~elr~lF-e~ygkVlECDIv--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLF-EQYGKVLECDIV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred chhccCCCcccchHHHHHHH-HhhCceEeeeee--------cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 69999999999999999999 999999999998 559999999999999999999999999999999998876
Q ss_pred CccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHH
Q 015091 255 KTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEA 334 (413)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a 334 (413)
.. .+.+|+|+||...++.+||+..|++||.|.+++|.++ ++||.|+-.++|..|
T Consensus 75 sk------------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--y~fvh~d~~eda~~a 128 (346)
T KOG0109|consen 75 SK------------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--YAFVHFDRAEDAVEA 128 (346)
T ss_pred CC------------------------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc--eeEEEEeeccchHHH
Confidence 32 4578999999999999999999999999999999876 999999999999999
Q ss_pred HHHhcCceeCCeeEEEEeccCCC
Q 015091 335 LRMLNGTQLGGQNIRLSWGRSPS 357 (413)
Q Consensus 335 ~~~l~~~~~~g~~l~v~~~~~~~ 357 (413)
++.|++++|.|++++|.+..++-
T Consensus 129 ir~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 129 IRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred Hhcccccccccceeeeeeecccc
Confidence 99999999999999999977643
No 37
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.91 E-value=2e-23 Score=184.19 Aligned_cols=171 Identities=21% Similarity=0.378 Sum_probs=150.7
Q ss_pred CCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccC
Q 015091 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (413)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 251 (413)
...+|||++|+|+++++.|++.| ++||+|.++.+++++.+++++||+||+|++.+...+++ ....+.++++.|.++.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf-~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYF-SQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCccccHHHHHHHh-cccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceec
Confidence 56799999999999999999999 99999999999999999999999999999999999888 56678899999999999
Q ss_pred CCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEe
Q 015091 252 TNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQF 325 (413)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f 325 (413)
..+...... .......+|||++|+.++++++|+++|++||.|.++.+..+ ++|+||+|
T Consensus 83 v~r~~~~~~----------------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~ 146 (311)
T KOG4205|consen 83 VSREDQTKV----------------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTF 146 (311)
T ss_pred cCccccccc----------------ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEe
Confidence 887654321 11125689999999999999999999999999998888543 78999999
Q ss_pred cCHHHHHHHHHHhcCceeCCeeEEEEeccCCCCCCC
Q 015091 326 ADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361 (413)
Q Consensus 326 ~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 361 (413)
.+++.+.+++. .+-+.|.++.++|..|.++.....
T Consensus 147 ~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 147 DSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred ccccccceecc-cceeeecCceeeEeeccchhhccc
Confidence 99999999998 488999999999999988765443
No 38
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.90 E-value=5e-22 Score=173.97 Aligned_cols=266 Identities=19% Similarity=0.329 Sum_probs=208.1
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccE-EEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGY-GFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~-afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
..--+++|.|+-..++-+-|..+|++||.|..|....... +| |+|.|.+.+.|..|...|+|+.|.+..+.+++
T Consensus 148 n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn-----~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrI 222 (492)
T KOG1190|consen 148 NPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNN-----GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRI 222 (492)
T ss_pred ceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEeccc-----chhhhhhccchhhHHHHHHhccCCcccCceeEEEe
Confidence 3445678999999999999999999999998877655332 45 99999999999999999999999988888888
Q ss_pred eeccCCCCC---------------------------------------------------------CCCCC--CCceEEe
Q 015091 158 NWASFGAGE---------------------------------------------------------KRDDT--PDHTIFV 178 (413)
Q Consensus 158 ~~~~~~~~~---------------------------------------------------------~~~~~--~~~~l~v 178 (413)
++++..... .+-.. .+..|.|
T Consensus 223 d~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllv 302 (492)
T KOG1190|consen 223 DFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLV 302 (492)
T ss_pred ehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEE
Confidence 876221100 00011 1466788
Q ss_pred cCCCC-CCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCCCCcc
Q 015091 179 GDLAA-DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257 (413)
Q Consensus 179 ~~lp~-~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~ 257 (413)
.||.. .+|.+.|..+| ..||+|..|+|+.++ +..|.|.+.+...|..|++.|+++.+.|+.|+|.++......
T Consensus 303 snln~~~VT~d~LftlF-gvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 303 SNLNEEAVTPDVLFTLF-GVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ecCchhccchhHHHHHH-hhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 88866 68999999999 999999999999886 467999999999999999999999999999999998776544
Q ss_pred CCCccCCCCc----ccCcc--------cc-cCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEE-Ee-eCCCcEEE
Q 015091 258 SGQQQYPKAS----YQNSQ--------VA-QSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV-KI-PAGKRCGF 322 (413)
Q Consensus 258 ~~~~~~~~~~----~~~~~--------~~-~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v-~~-~~~~~~af 322 (413)
..++...+.. +.... .. .....+.+.+|.+.|||.+++||+|+.+|...|...+. .+ .+++..|+
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal 456 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMAL 456 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceee
Confidence 4332222210 00000 00 11123567799999999999999999999988866443 33 56789999
Q ss_pred EEecCHHHHHHHHHHhcCceeCCe-eEEEEeccC
Q 015091 323 VQFADRSCAEEALRMLNGTQLGGQ-NIRLSWGRS 355 (413)
Q Consensus 323 V~f~~~~~a~~a~~~l~~~~~~g~-~l~v~~~~~ 355 (413)
+.+++.|+|..|+..+|.+.++.. .|+|+|.++
T Consensus 457 ~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 457 PQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 999999999999999999998654 999999875
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.90 E-value=8.4e-24 Score=177.17 Aligned_cols=150 Identities=21% Similarity=0.434 Sum_probs=135.2
Q ss_pred ceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeeecc
Q 015091 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (413)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~ 161 (413)
..|||+|||..+++.+|+.+|++||.|.+|.|+++ |+||..++...|+.||+.|++..|.+..+.|+. ++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVea--Sk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEA--SK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEe--cc
Confidence 36999999999999999999999999999999975 999999999999999999999999765555444 33
Q ss_pred CCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccc
Q 015091 162 FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (413)
Q Consensus 162 ~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~ 241 (413)
.+ +..+++|+|+||...++.++|+..| +.||.|.+++|+ ++|+||.|...++|..|++.|++.+|
T Consensus 73 sK------sk~stkl~vgNis~tctn~ElRa~f-e~ygpviecdiv--------kdy~fvh~d~~eda~~air~l~~~~~ 137 (346)
T KOG0109|consen 73 SK------SKASTKLHVGNISPTCTNQELRAKF-EKYGPVIECDIV--------KDYAFVHFDRAEDAVEAIRGLDNTEF 137 (346)
T ss_pred cc------CCCccccccCCCCccccCHHHhhhh-cccCCceeeeee--------cceeEEEEeeccchHHHHhccccccc
Confidence 22 5677899999999999999999999 899999999997 66999999999999999999999999
Q ss_pred cCcceEeccCCCCCc
Q 015091 242 STRPMRIGPATNKKT 256 (413)
Q Consensus 242 ~g~~i~v~~~~~~~~ 256 (413)
.|+.++|..+..+-.
T Consensus 138 ~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 138 QGKRMHVQLSTSRLR 152 (346)
T ss_pred ccceeeeeeeccccc
Confidence 999999998877643
No 40
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.90 E-value=5.9e-23 Score=181.15 Aligned_cols=178 Identities=24% Similarity=0.399 Sum_probs=151.4
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeee
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 158 (413)
.+.++|||++|.|+++++.|+++|++||+|.+|.+++|+.+++++||+||+|++++...+++.. ....|+++.+..+..
T Consensus 4 ~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 4 GESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRA 82 (311)
T ss_pred cCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceec
Confidence 3789999999999999999999999999999999999999999999999999999999999853 333444444444443
Q ss_pred eccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCC
Q 015091 159 WASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238 (413)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~ 238 (413)
.+..............++||++|+.++++++++++| ++||.|..+.++.|..+.+.++|+||.|.+++++.+++ .+.-
T Consensus 83 v~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yf-e~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f 160 (311)
T KOG4205|consen 83 VSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYF-EQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKF 160 (311)
T ss_pred cCcccccccccccceeEEEecCcCCCCchHHHhhhh-hccceeEeeEEeecccccccccceeeEeccccccceec-ccce
Confidence 333322222333357799999999999999999999 89999999999999999999999999999999999998 6778
Q ss_pred ccccCcceEeccCCCCCccCC
Q 015091 239 VFCSTRPMRIGPATNKKTVSG 259 (413)
Q Consensus 239 ~~~~g~~i~v~~~~~~~~~~~ 259 (413)
+.|.++.+.|..|.++.....
T Consensus 161 ~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 161 HDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred eeecCceeeEeeccchhhccc
Confidence 899999999999999876654
No 41
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=1.3e-21 Score=180.79 Aligned_cols=273 Identities=20% Similarity=0.313 Sum_probs=204.7
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHhhcc-----------C-ceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 015091 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHT-----------G-EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143 (413)
Q Consensus 76 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~-----------G-~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l 143 (413)
......+.++|++++..++++.+..+|..- | .+..|.+...+ .|||++|.+.++|..|+ .+
T Consensus 170 ~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~-~~ 242 (500)
T KOG0120|consen 170 QATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAM-AL 242 (500)
T ss_pred chhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhh-cc
Confidence 456778899999999999999999998653 3 37777776655 79999999999999998 45
Q ss_pred CCCcCCCCCcceeeeecc-----------------CCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEE
Q 015091 144 NGTPMPNGEQNFRLNWAS-----------------FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKV 206 (413)
Q Consensus 144 ~g~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~ 206 (413)
++..+.+....+...... ............+++||++|+...++.++++++ +.||.+....+
T Consensus 243 ~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell-~~fg~lk~f~l 321 (500)
T KOG0120|consen 243 DGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELL-DSFGPLKAFRL 321 (500)
T ss_pred cchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHH-Hhcccchhhee
Confidence 666665544433332211 011111223445789999999999999999999 89999999999
Q ss_pred EEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCCCCccCCCccCCCC--cccCcccccCCCCCCCce
Q 015091 207 VIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKA--SYQNSQVAQSDDDPNNTT 284 (413)
Q Consensus 207 ~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 284 (413)
+.+..+|-++||||.+|.+......|++.|||..+.++.+.|..+............... ...............+.+
T Consensus 322 v~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~V 401 (500)
T KOG0120|consen 322 VKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEV 401 (500)
T ss_pred ecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchh
Confidence 999999999999999999999999999999999999999999988776544332221000 000011111233345556
Q ss_pred EEEecCCC--CC-CH-------HHHHHHHhcCCCeEEEEeeCC---------CcEEEEEecCHHHHHHHHHHhcCceeCC
Q 015091 285 VFVGNLDS--IV-TD-------EHLRELFSQYGQLVHVKIPAG---------KRCGFVQFADRSCAEEALRMLNGTQLGG 345 (413)
Q Consensus 285 l~v~nlp~--~~-~~-------~~l~~~f~~~G~i~~v~~~~~---------~~~afV~f~~~~~a~~a~~~l~~~~~~g 345 (413)
|.+.|+-. ++ .+ |+|+..|++||.|.+|.|+++ .|..||+|.+.+++++|.+.|+|.+|.|
T Consensus 402 l~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~n 481 (500)
T KOG0120|consen 402 LCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFAN 481 (500)
T ss_pred hhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCC
Confidence 66665421 11 11 566777899999999999765 5788999999999999999999999999
Q ss_pred eeEEEEeccCC
Q 015091 346 QNIRLSWGRSP 356 (413)
Q Consensus 346 ~~l~v~~~~~~ 356 (413)
|.+..+|-...
T Consensus 482 RtVvtsYydeD 492 (500)
T KOG0120|consen 482 RTVVASYYDED 492 (500)
T ss_pred cEEEEEecCHH
Confidence 99999986543
No 42
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=1.3e-22 Score=175.01 Aligned_cols=174 Identities=20% Similarity=0.446 Sum_probs=150.1
Q ss_pred ceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCC
Q 015091 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (413)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 253 (413)
++||||.|.+...|+.|+..| ..||.|++|++-+|..|+++|||+||+|+-.|.|..|++.||+..++||.|+|.+...
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF-~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAF-DPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred HheeeeeeEEEechHHHHhhc-cCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 479999999999999999999 8999999999999999999999999999999999999999999999999999986544
Q ss_pred CCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecC
Q 015091 254 KKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFAD 327 (413)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~ 327 (413)
....... -....++...-++|||..+-.+++++||+..|+.||+|.+|.+.++ |||+||+|.+
T Consensus 193 mpQAQpi-----------ID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n 261 (544)
T KOG0124|consen 193 MPQAQPI-----------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNN 261 (544)
T ss_pred CcccchH-----------HHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEecc
Confidence 3221100 0000112234578999999999999999999999999999999653 8999999999
Q ss_pred HHHHHHHHHHhcCceeCCeeEEEEeccCCCCC
Q 015091 328 RSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 359 (413)
Q Consensus 328 ~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 359 (413)
..+...|+..||-..++|..|+|-.+..+...
T Consensus 262 ~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~a 293 (544)
T KOG0124|consen 262 LQSQSEAIASMNLFDLGGQYLRVGKCVTPPDA 293 (544)
T ss_pred ccchHHHhhhcchhhcccceEecccccCCCch
Confidence 99999999999999999999999887765543
No 43
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=1.3e-20 Score=156.06 Aligned_cols=175 Identities=25% Similarity=0.454 Sum_probs=148.6
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCc-CCCCCcceee
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTP-MPNGEQNFRL 157 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~-~~~~~~~~~~ 157 (413)
.+.++|||+.|...-.|+|++.+|..||.|.+|.+.+.. .|.+||||||+|.+..+|..||..|+|.. +.+-.-.+.+
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 478899999999999999999999999999999999987 69999999999999999999999999854 4443333333
Q ss_pred eeccCCC-------------------------------------------------------------------------
Q 015091 158 NWASFGA------------------------------------------------------------------------- 164 (413)
Q Consensus 158 ~~~~~~~------------------------------------------------------------------------- 164 (413)
.++....
T Consensus 96 K~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~ 175 (371)
T KOG0146|consen 96 KFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLA 175 (371)
T ss_pred EeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccc
Confidence 3220000
Q ss_pred --------------------------------------------------------------------------------
Q 015091 165 -------------------------------------------------------------------------------- 164 (413)
Q Consensus 165 -------------------------------------------------------------------------------- 164 (413)
T Consensus 176 A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~A 255 (371)
T KOG0146|consen 176 AAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAA 255 (371)
T ss_pred cCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhh
Confidence
Q ss_pred ---------------------CCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEe
Q 015091 165 ---------------------GEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223 (413)
Q Consensus 165 ---------------------~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f 223 (413)
...++....++|||-.||.+..+.+|...| -.||.|.+.++..|+.|+.+|.|+||.|
T Consensus 256 aypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF-~PFGhivSaKVFvDRATNQSKCFGFVSf 334 (371)
T KOG0146|consen 256 AYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMF-LPFGHIVSAKVFVDRATNQSKCFGFVSF 334 (371)
T ss_pred hcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHh-ccccceeeeeeeehhccccccceeeEec
Confidence 000113456899999999999999999999 8999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCccccCcceEeccCCCCC
Q 015091 224 GDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255 (413)
Q Consensus 224 ~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 255 (413)
++..++..||..|||..|+=++|+|....++.
T Consensus 335 DNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 335 DNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred CCchhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 99999999999999999999999998776654
No 44
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=4e-20 Score=153.25 Aligned_cols=186 Identities=23% Similarity=0.423 Sum_probs=149.1
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCcc-cc--CcceE
Q 015091 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-CS--TRPMR 247 (413)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~-~~--g~~i~ 247 (413)
...++||||-|.+.-.|+|++.+| ..||+|++|.+.+.. .|.+||++||.|.+..+|..||..|++.. +- ...|.
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf-~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLF-QPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHh-cccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 366799999999999999999999 999999999998886 88999999999999999999999999865 33 46778
Q ss_pred eccCCCCCccCCCcc-------------------------------------------------------------C---
Q 015091 248 IGPATNKKTVSGQQQ-------------------------------------------------------------Y--- 263 (413)
Q Consensus 248 v~~~~~~~~~~~~~~-------------------------------------------------------------~--- 263 (413)
|++++..+++.-+.. .
T Consensus 95 VK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl 174 (371)
T KOG0146|consen 95 VKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGL 174 (371)
T ss_pred EEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccc
Confidence 888877654431110 0
Q ss_pred ------C----C-------------------C-----------------ccc---------Ccc----------------
Q 015091 264 ------P----K-------------------A-----------------SYQ---------NSQ---------------- 272 (413)
Q Consensus 264 ------~----~-------------------~-----------------~~~---------~~~---------------- 272 (413)
. . + -+. ...
T Consensus 175 ~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~ 254 (371)
T KOG0146|consen 175 AAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYA 254 (371)
T ss_pred ccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHh
Confidence 0 0 0 000 000
Q ss_pred ---------------------cccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeC------CCcEEEEEe
Q 015091 273 ---------------------VAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA------GKRCGFVQF 325 (413)
Q Consensus 273 ---------------------~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~------~~~~afV~f 325 (413)
.....+.+..|.|||..||.++.+.||.++|..||.|.+.++.- +|+|+||.|
T Consensus 255 Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSf 334 (371)
T KOG0146|consen 255 AAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSF 334 (371)
T ss_pred hhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEec
Confidence 00011335789999999999999999999999999998887743 378999999
Q ss_pred cCHHHHHHHHHHhcCceeCCeeEEEEeccCCCC
Q 015091 326 ADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 358 (413)
Q Consensus 326 ~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 358 (413)
++..+|+.||..|||..|+=++|+|.+.+++..
T Consensus 335 DNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 335 DNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred CCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 999999999999999999999999999887653
No 45
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.83 E-value=3.5e-20 Score=173.66 Aligned_cols=172 Identities=19% Similarity=0.344 Sum_probs=146.1
Q ss_pred eeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCC---CCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeee
Q 015091 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQT---GQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (413)
Q Consensus 83 ~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 159 (413)
+|||.||++++|.++|..+|...|.|.++.|...+.. -.|.|||||+|.+.++|++|++.|+|+.+++..+.+++..
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 3999999999999999999999999999998776531 1256999999999999999999999999998887777765
Q ss_pred ccCCC---CCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhh
Q 015091 160 ASFGA---GEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (413)
Q Consensus 160 ~~~~~---~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l 236 (413)
..... .........++|+|.|||+.++..+++++| ..||.+.++++......+.++|||||+|-+..+|..|++.|
T Consensus 597 ~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF-~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 597 NKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLF-TAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred CccccccccccccccccceeeeeccchHHHHHHHHHHH-hcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhh
Confidence 21111 111122335789999999999999999999 89999999999877545667999999999999999999999
Q ss_pred CCccccCcceEeccCCCCC
Q 015091 237 NGVFCSTRPMRIGPATNKK 255 (413)
Q Consensus 237 ~~~~~~g~~i~v~~~~~~~ 255 (413)
..+.+.||.|.+.|+....
T Consensus 676 ~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 676 GSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred cccceechhhheehhccch
Confidence 9999999999999997753
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.81 E-value=2.1e-18 Score=151.48 Aligned_cols=269 Identities=19% Similarity=0.264 Sum_probs=183.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHH-------hCCCcCC-
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT-------FNGTPMP- 149 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~-------l~g~~~~- 149 (413)
...++.|.++|||++++|+||-+++..||.|+.+.+.+.+ .-||++|.+.++|..-+.. |.+..+.
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk------nQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yi 98 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK------NQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYI 98 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccc------hhhhhhhcchhhhhheeecccccCccccCcceee
Confidence 3478899999999999999999999999999999998876 4899999999999883322 1111110
Q ss_pred ----------------CCCcceeeeec----------cCCCCCCCCCCCC--ceEEecCCCCCCCHHHHHHHHhhhCCCc
Q 015091 150 ----------------NGEQNFRLNWA----------SFGAGEKRDDTPD--HTIFVGDLAADVTDYMLQETFRARYPST 201 (413)
Q Consensus 150 ----------------~~~~~~~~~~~----------~~~~~~~~~~~~~--~~l~v~~lp~~~~~~~l~~~f~~~~g~v 201 (413)
.+...+-..++ ...........++ -.++|.++-..++-+-|..+| +.||.|
T Consensus 99 q~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvF-S~fG~V 177 (492)
T KOG1190|consen 99 QYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVF-SKFGFV 177 (492)
T ss_pred hhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHH-hhccee
Confidence 00000000000 0000001111122 357889999999999999999 999999
Q ss_pred ceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCc--ceEeccCCCCCcc---------C-CCccCCCC---
Q 015091 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR--PMRIGPATNKKTV---------S-GQQQYPKA--- 266 (413)
Q Consensus 202 ~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~--~i~v~~~~~~~~~---------~-~~~~~~~~--- 266 (413)
..|.-... + ..=.|.|.|.+.+.|..|...|+|..|.+- .|+|.++...... + ........
T Consensus 178 lKIiTF~K--n--n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~ 253 (492)
T KOG1190|consen 178 LKIITFTK--N--NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQ 253 (492)
T ss_pred EEEEEEec--c--cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccc
Confidence 87654322 1 122478999999999999999999887553 3445444321110 0 00000000
Q ss_pred --------------------------cccCcccc-cCCCCC-CCceEEEecCCCC-CCHHHHHHHHhcCCCeEEEEeeCC
Q 015091 267 --------------------------SYQNSQVA-QSDDDP-NNTTVFVGNLDSI-VTDEHLRELFSQYGQLVHVKIPAG 317 (413)
Q Consensus 267 --------------------------~~~~~~~~-~~~~~~-~~~~l~v~nlp~~-~~~~~l~~~f~~~G~i~~v~~~~~ 317 (413)
........ ...... .+..|.|.||... +|.+.|..+|.-||+|.+|.|..+
T Consensus 254 p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n 333 (492)
T KOG1190|consen 254 PSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN 333 (492)
T ss_pred cccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec
Confidence 00000000 111111 2678889999764 799999999999999999999765
Q ss_pred -CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCC
Q 015091 318 -KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 357 (413)
Q Consensus 318 -~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 357 (413)
+..|.|+|.|...|.-|+..|+|..|-|+.|+|.+.|-..
T Consensus 334 kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 334 KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred CCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 4689999999999999999999999999999999987543
No 47
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=4.9e-18 Score=133.25 Aligned_cols=170 Identities=15% Similarity=0.250 Sum_probs=134.2
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEecc
Q 015091 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (413)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 250 (413)
..+++|||+|||.++.+.+|.++| .+||.|..|.+.... ..-.||||+|++..+|+.||..-++-.++|..|+|++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlF-yKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLF-YKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred cccceEEecCCCcchhhccHHHHH-hhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 456789999999999999999999 899999999885432 3467999999999999999999999999999999999
Q ss_pred CCCCCccCCCccC-CCCc---ccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEec
Q 015091 251 ATNKKTVSGQQQY-PKAS---YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFA 326 (413)
Q Consensus 251 ~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~ 326 (413)
+............ .... .................|.|.+||.+-+|+||+++..+.|.|+..++.++ +++.|+|.
T Consensus 80 prggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-g~GvV~~~ 158 (241)
T KOG0105|consen 80 PRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-GVGVVEYL 158 (241)
T ss_pred ccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-cceeeeee
Confidence 8776532211100 0000 00000011222334578999999999999999999999999999999887 59999999
Q ss_pred CHHHHHHHHHHhcCceeCC
Q 015091 327 DRSCAEEALRMLNGTQLGG 345 (413)
Q Consensus 327 ~~~~a~~a~~~l~~~~~~g 345 (413)
..|+.+-|+..|+...+..
T Consensus 159 r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 159 RKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred ehhhHHHHHHhhccccccC
Confidence 9999999999998887643
No 48
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.79 E-value=5.6e-18 Score=138.58 Aligned_cols=179 Identities=21% Similarity=0.373 Sum_probs=144.9
Q ss_pred CCceEEecCCCCCCCHHHHHH----HHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceE
Q 015091 172 PDHTIFVGDLAADVTDYMLQE----TFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (413)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~----~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 247 (413)
++.||||.||...+..++|++ +| ++||.|.+|... .+.+.+|.|||.|.+.+.|..|+..|+|..|.|+.++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LF-sqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLF-SQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHH-HhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 344999999999999999988 89 899999887765 3668899999999999999999999999999999999
Q ss_pred eccCCCCCccCCCccCCCC-------------------c----c----cC-cccccCCCCCCCceEEEecCCCCCCHHHH
Q 015091 248 IGPATNKKTVSGQQQYPKA-------------------S----Y----QN-SQVAQSDDDPNNTTVFVGNLDSIVTDEHL 299 (413)
Q Consensus 248 v~~~~~~~~~~~~~~~~~~-------------------~----~----~~-~~~~~~~~~~~~~~l~v~nlp~~~~~~~l 299 (413)
|.||..+.....+...... . + .. ...........+..+|+.|||..++.+.|
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 9999887554433110000 0 0 00 00000233567889999999999999999
Q ss_pred HHHHhcCCCeEEEEeeCC-CcEEEEEecCHHHHHHHHHHhcCceeC-CeeEEEEecc
Q 015091 300 RELFSQYGQLVHVKIPAG-KRCGFVQFADRSCAEEALRMLNGTQLG-GQNIRLSWGR 354 (413)
Q Consensus 300 ~~~f~~~G~i~~v~~~~~-~~~afV~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~ 354 (413)
..+|.+|.....|++... ++.|||+|.+...|..|...|.+..|. ...+.|.+++
T Consensus 164 ~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999988775 689999999999999999999999886 7788888765
No 49
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.79 E-value=5e-18 Score=135.52 Aligned_cols=80 Identities=29% Similarity=0.552 Sum_probs=72.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEe
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
...+++|||+||+.++++++|+++|++||.|.++.+..+ ++||||+|++.++|++|++.|++..|+|+.|+|+|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345678999999999999999999999999999999643 78999999999999999999999999999999999
Q ss_pred ccCCCC
Q 015091 353 GRSPSN 358 (413)
Q Consensus 353 ~~~~~~ 358 (413)
++.+..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 986443
No 50
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.77 E-value=4.4e-19 Score=161.94 Aligned_cols=178 Identities=25% Similarity=0.400 Sum_probs=148.4
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEe
Q 015091 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 248 (413)
++...+++|+--|....+..+|.++| +.+|.|.+|.++.|..+++++|.+||+|.+.+....|| .|.|..+.|.+|.|
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efF-s~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~v 252 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFF-SIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIV 252 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHH-HhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEe
Confidence 34456789999999999999999999 89999999999999999999999999999999999999 89999999999999
Q ss_pred ccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEE
Q 015091 249 GPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGF 322 (413)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~af 322 (413)
......+..... ............+-..|||+||-+++++++|+..|+.||.|..|.+.++ +||+|
T Consensus 253 q~sEaeknr~a~--------~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGf 324 (549)
T KOG0147|consen 253 QLSEAEKNRAAN--------ASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGF 324 (549)
T ss_pred cccHHHHHHHHh--------ccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcce
Confidence 876554433111 0111111111122233999999999999999999999999999999765 78999
Q ss_pred EEecCHHHHHHHHHHhcCceeCCeeEEEEeccCC
Q 015091 323 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 356 (413)
Q Consensus 323 V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 356 (413)
|+|.+.++|.+|+..|||.+|-|+.|+|.....+
T Consensus 325 i~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 325 ITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred EEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 9999999999999999999999999999875543
No 51
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.76 E-value=3.2e-17 Score=134.18 Aligned_cols=165 Identities=19% Similarity=0.369 Sum_probs=136.1
Q ss_pred CCCcceeeecCCCCCCCHHHHHH----HhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCc
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNT----CFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~----~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~ 153 (413)
.++..||||.||+..+..++|+. +|++||.|.+|...+ +.+.+|-|||.|.+.+.|..|+..|+|..+.++.+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 34556999999999999999987 999999999998875 57899999999999999999999999999988765
Q ss_pred ceeeeeccCCCCCC--------------------------------------------CCCCCCceEEecCCCCCCCHHH
Q 015091 154 NFRLNWASFGAGEK--------------------------------------------RDDTPDHTIFVGDLAADVTDYM 189 (413)
Q Consensus 154 ~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~l~v~~lp~~~~~~~ 189 (413)
.+....+..+...+ ....++..+|+.|||..++.+.
T Consensus 83 riqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~ 162 (221)
T KOG4206|consen 83 RIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEM 162 (221)
T ss_pred heecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHH
Confidence 55443332221111 1134567899999999999999
Q ss_pred HHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCcccc-CcceEeccC
Q 015091 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS-TRPMRIGPA 251 (413)
Q Consensus 190 l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~ 251 (413)
+..+| .+|.....++++... .+.|||+|.+...|..|...+++..+. ...+.|.++
T Consensus 163 l~~lf-~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 163 LSDLF-EQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred HHHHH-hhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 99999 899999999988665 789999999999999999999988876 677777665
No 52
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.76 E-value=4e-17 Score=147.27 Aligned_cols=167 Identities=19% Similarity=0.258 Sum_probs=130.0
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
......|-+.+|||++|+++|+++| +.++ |++ ++....+|+..|-|||+|.+++++++|+ +++...+..+.|.|-
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff-~~~~-I~~--~~~~r~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFF-SNCG-IEN--LEIPRRNGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVF 81 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHH-hcCc-eeE--EEEeccCCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEE
Confidence 3445578889999999999999999 6554 555 4444557999999999999999999999 678888999999998
Q ss_pred cCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEE-EEee-----CCCcEEEE
Q 015091 250 PATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVH-VKIP-----AGKRCGFV 323 (413)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~-v~~~-----~~~~~afV 323 (413)
.+........-. . ...........|.+++||+.||++||.+||+..-.|.+ |.+. +..+.|||
T Consensus 82 ~~~~~e~d~~~~---------~--~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfV 150 (510)
T KOG4211|consen 82 TAGGAEADWVMR---------P--GGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFV 150 (510)
T ss_pred ccCCcccccccc---------C--CCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEE
Confidence 887665432110 0 01111145678999999999999999999998765555 3232 23678999
Q ss_pred EecCHHHHHHHHHHhcCceeCCeeEEEEec
Q 015091 324 QFADRSCAEEALRMLNGTQLGGQNIRLSWG 353 (413)
Q Consensus 324 ~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 353 (413)
+|++.+.|++|+.. |...|+.|-|+|-.+
T Consensus 151 qF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 151 QFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred EecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 99999999999997 778899999998543
No 53
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.76 E-value=3.8e-16 Score=135.78 Aligned_cols=269 Identities=18% Similarity=0.201 Sum_probs=195.4
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
.+..+-.|.|++|-..++|.+|.+.++.||.|.-|..+..+ ..|+|+|++.+.|.+|+..--...+.......-
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchhh
Confidence 34567789999999999999999999999999888887665 589999999999999986433333332333334
Q ss_pred eeeccCCCCCCC---CCCCCceEEecCC--CCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHH
Q 015091 157 LNWASFGAGEKR---DDTPDHTIFVGDL--AADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231 (413)
Q Consensus 157 ~~~~~~~~~~~~---~~~~~~~l~v~~l--p~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~ 231 (413)
+++++....++. ....+..|.+.-| -..+|-+-|..+. ...|.|..|.|++. + --.|.|||++.+.|++
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Ic-np~GkVlRIvIfkk--n---gVQAmVEFdsv~~Aqr 174 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTIC-NPQGKVLRIVIFKK--N---GVQAMVEFDSVEVAQR 174 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhc-CCCCceEEEEEEec--c---ceeeEEeechhHHHHH
Confidence 444433332221 2233444444444 4478889999999 89999998888765 2 4579999999999999
Q ss_pred HHHhhCCccc--cCcceEeccCCCCCccCCC-----ccC-----------CCC----------------c----------
Q 015091 232 AMTEMNGVFC--STRPMRIGPATNKKTVSGQ-----QQY-----------PKA----------------S---------- 267 (413)
Q Consensus 232 a~~~l~~~~~--~g~~i~v~~~~~~~~~~~~-----~~~-----------~~~----------------~---------- 267 (413)
|.+.|||..| +-.+|+|+++.+.+..-.+ +.. ..+ +
T Consensus 175 Ak~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~s 254 (494)
T KOG1456|consen 175 AKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYS 254 (494)
T ss_pred HHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcc
Confidence 9999999876 3467778888664321100 000 000 0
Q ss_pred ------------------ccCcccccCCCCCCCceEEEecCCCC-CCHHHHHHHHhcCCCeEEEEeeCC-CcEEEEEecC
Q 015091 268 ------------------YQNSQVAQSDDDPNNTTVFVGNLDSI-VTDEHLRELFSQYGQLVHVKIPAG-KRCGFVQFAD 327 (413)
Q Consensus 268 ------------------~~~~~~~~~~~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~G~i~~v~~~~~-~~~afV~f~~ 327 (413)
..............++.+.|.+|... ++-+.|-.+|-.||.|++|++++. .+.|.|++.|
T Consensus 255 g~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd 334 (494)
T KOG1456|consen 255 GDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGD 334 (494)
T ss_pred cccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCc
Confidence 00000011123345788999999875 677889999999999999999876 5899999999
Q ss_pred HHHHHHHHHHhcCceeCCeeEEEEeccCCC
Q 015091 328 RSCAEEALRMLNGTQLGGQNIRLSWGRSPS 357 (413)
Q Consensus 328 ~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 357 (413)
..+.++|+..|++..+-|.+|.|.+++...
T Consensus 335 ~~aver~v~hLnn~~lfG~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 335 AYAVERAVTHLNNIPLFGGKLNVCVSKQNF 364 (494)
T ss_pred HHHHHHHHHHhccCccccceEEEeeccccc
Confidence 999999999999999999999999877543
No 54
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.75 E-value=8.8e-16 Score=133.52 Aligned_cols=266 Identities=21% Similarity=0.249 Sum_probs=197.2
Q ss_pred CCcceee--ecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 79 GEIRTLW--IGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 79 ~~~~~l~--v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
..+..|. |-|--+.+|.+.|..++...|.|..|.|++.. | -.|.|||++.+.|++|.+.|||..|...-++++
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn--g---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLK 192 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN--G---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLK 192 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc--c---eeeEEeechhHHHHHHHhhcccccccccceeEE
Confidence 3444444 44545678999999999999999999998753 2 369999999999999999999999988888888
Q ss_pred eeeccCCCCCC---------------------------------------------------------------------
Q 015091 157 LNWASFGAGEK--------------------------------------------------------------------- 167 (413)
Q Consensus 157 ~~~~~~~~~~~--------------------------------------------------------------------- 167 (413)
+++++.....-
T Consensus 193 IeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~ 272 (494)
T KOG1456|consen 193 IEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGY 272 (494)
T ss_pred EEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCcccc
Confidence 88763221000
Q ss_pred ---------CCCCCCceEEecCCCCC-CCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhC
Q 015091 168 ---------RDDTPDHTIFVGDLAAD-VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237 (413)
Q Consensus 168 ---------~~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~ 237 (413)
.-..+...++|-+|... +.-+.|.++| ..||.|+.|++++.+ .|.|.|++.|..+.++|+..||
T Consensus 273 ~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~-ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLn 346 (494)
T KOG1456|consen 273 RDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLF-CLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLN 346 (494)
T ss_pred ccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhh-hhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhc
Confidence 00123456888899874 5667899999 899999999999876 6789999999999999999999
Q ss_pred CccccCcceEeccCCCCCccCCCc--------cC---CCC---c-ccCcccccCCCCCCCceEEEecCCCCCCHHHHHHH
Q 015091 238 GVFCSTRPMRIGPATNKKTVSGQQ--------QY---PKA---S-YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLREL 302 (413)
Q Consensus 238 ~~~~~g~~i~v~~~~~~~~~~~~~--------~~---~~~---~-~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~ 302 (413)
+..+.|.+|.|..+.-........ .. ... . ..........-..++++|..-|.|..+|||.|.++
T Consensus 347 n~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i 426 (494)
T KOG1456|consen 347 NIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGI 426 (494)
T ss_pred cCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHH
Confidence 999999999987765443322110 00 000 0 01112233445567899999999999999999999
Q ss_pred HhcCCC-eEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCceeCCe------eEEEEeccC
Q 015091 303 FSQYGQ-LVHVKIPAG----KRCGFVQFADRSCAEEALRMLNGTQLGGQ------NIRLSWGRS 355 (413)
Q Consensus 303 f~~~G~-i~~v~~~~~----~~~afV~f~~~~~a~~a~~~l~~~~~~g~------~l~v~~~~~ 355 (413)
|...+. -.+|++... ...+.+||++.++|..||.+||-..|.+. .|++.|+.+
T Consensus 427 ~nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts 490 (494)
T KOG1456|consen 427 CNEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTS 490 (494)
T ss_pred hhhcCCCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeeccc
Confidence 987653 355555432 24689999999999999999998888653 455555443
No 55
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=4.2e-17 Score=128.06 Aligned_cols=153 Identities=14% Similarity=0.194 Sum_probs=124.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
.+.+++|||+|||.++.+.+|+++|.+||.|.+|.+...+ ..-.||||+|+++.+|+.||..-+|..+++..+.+++
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 3567899999999999999999999999999999875432 3347999999999999999999999999887666666
Q ss_pred eeccCCCCCC--------------------CCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCce
Q 015091 158 NWASFGAGEK--------------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKG 217 (413)
Q Consensus 158 ~~~~~~~~~~--------------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g 217 (413)
......+... ........|.|.+||.+.++++|+++. ...|.|-...+.+| |
T Consensus 80 prggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHm-ReaGdvCfadv~rD-------g 151 (241)
T KOG0105|consen 80 PRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHM-REAGDVCFADVQRD-------G 151 (241)
T ss_pred ccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHH-HhhCCeeeeeeecc-------c
Confidence 5433211111 112345689999999999999999999 67888877777654 4
Q ss_pred eEEEEeCCHHHHHHHHHhhCCccc
Q 015091 218 YGFVRFGDESEQLRAMTEMNGVFC 241 (413)
Q Consensus 218 ~afv~f~~~~~a~~a~~~l~~~~~ 241 (413)
++.|+|...|+.+-|+.+|+...+
T Consensus 152 ~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 152 VGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred ceeeeeeehhhHHHHHHhhccccc
Confidence 789999999999999999987665
No 56
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.72 E-value=2.2e-16 Score=127.82 Aligned_cols=161 Identities=20% Similarity=0.292 Sum_probs=121.2
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEec-CCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCC-Cc
Q 015091 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRN-KQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG-EQ 153 (413)
Q Consensus 76 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~-~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~-~~ 153 (413)
..+.+.|||||.+||.++...+|..+|..|--.+.+.+... +....++-+|||.|.+..+|.+|++.|||..|+-. ..
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 35677899999999999999999999999987777777553 33334568999999999999999999999988532 23
Q ss_pred ceeeeeccCCCCCCCC----------------------------------------------------------------
Q 015091 154 NFRLNWASFGAGEKRD---------------------------------------------------------------- 169 (413)
Q Consensus 154 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 169 (413)
+++++.++...+.++.
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 3333333111100000
Q ss_pred ------------------CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHH
Q 015091 170 ------------------DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231 (413)
Q Consensus 170 ------------------~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~ 231 (413)
...+.+|||.||..+++|++|+.+| +.|.....++|.. +.| ...||++|++.+.|..
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~-~~~~gf~~l~~~~--~~g--~~vaf~~~~~~~~at~ 263 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLL-SRYPGFHILKIRA--RGG--MPVAFADFEEIEQATD 263 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHH-HhCCCceEEEEec--CCC--cceEeecHHHHHHHHH
Confidence 1124579999999999999999999 8887766555431 133 5679999999999999
Q ss_pred HHHhhCCccc
Q 015091 232 AMTEMNGVFC 241 (413)
Q Consensus 232 a~~~l~~~~~ 241 (413)
|+..|+|..+
T Consensus 264 am~~lqg~~~ 273 (284)
T KOG1457|consen 264 AMNHLQGNLL 273 (284)
T ss_pred HHHHhhccee
Confidence 9999998776
No 57
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=5.9e-17 Score=134.23 Aligned_cols=165 Identities=22% Similarity=0.367 Sum_probs=134.4
Q ss_pred eEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCCC
Q 015091 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254 (413)
Q Consensus 175 ~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 254 (413)
.+||++|++.+.+.+|..+| ..||.+..+.+. .||+||+|.+.-+|..|+..+++..+.+..+.|.++...
T Consensus 3 rv~vg~~~~~~~~~d~E~~f-~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFF-KGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred ceeecccCCccchhHHHHHH-hhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 68999999999999999999 899999988875 578899999999999999999999999988888888754
Q ss_pred CccCCCccCCCCcccCc-ccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHH
Q 015091 255 KTVSGQQQYPKASYQNS-QVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEE 333 (413)
Q Consensus 255 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~ 333 (413)
.-..+..... .... .........+.+.+.|.++...+++.+|.++|..+|.+....+ .++++||+|++.++|.+
T Consensus 74 ~~~~g~~~~g---~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~r 148 (216)
T KOG0106|consen 74 RRGRGRPRGG---DRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKR 148 (216)
T ss_pred ccccCCCCCC---CccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhh
Confidence 3222110000 0000 1111223456788999999999999999999999999966666 56799999999999999
Q ss_pred HHHHhcCceeCCeeEEEEec
Q 015091 334 ALRMLNGTQLGGQNIRLSWG 353 (413)
Q Consensus 334 a~~~l~~~~~~g~~l~v~~~ 353 (413)
|+..|++..+.++.|.+...
T Consensus 149 a~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 149 ALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred cchhccchhhcCceeeeccc
Confidence 99999999999999999543
No 58
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.69 E-value=2.8e-16 Score=137.03 Aligned_cols=272 Identities=14% Similarity=0.125 Sum_probs=179.5
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
...++..|..++|||..++.+|..+|.-.....-.+.+.....|+-.|++.|.|.+.|.-+-|++. +...+. ...+.
T Consensus 56 ~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g--~ryie 132 (508)
T KOG1365|consen 56 SADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMG--TRYIE 132 (508)
T ss_pred ccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhcc--CCcee
Confidence 456677789999999999999999997653332223333233466669999999999999999975 222221 11222
Q ss_pred eee---------ccCCCCCCCC---CCCCceEEecCCCCCCCHHHHHHHHhhh----CCCcceeEEEEcCCCCCCceeEE
Q 015091 157 LNW---------ASFGAGEKRD---DTPDHTIFVGDLAADVTDYMLQETFRAR----YPSTKGAKVVIDRLTGRTKGYGF 220 (413)
Q Consensus 157 ~~~---------~~~~~~~~~~---~~~~~~l~v~~lp~~~~~~~l~~~f~~~----~g~v~~~~~~~~~~~g~~~g~af 220 (413)
+-. +...+.+... ....-.|..++||+++++.++.++| .. .|..+.+.++.. .+|+..|-||
T Consensus 133 vYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF-~~~cpv~~g~egvLFV~r-pdgrpTGdAF 210 (508)
T KOG1365|consen 133 VYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFF-GPPCPVTGGTEGVLFVTR-PDGRPTGDAF 210 (508)
T ss_pred eeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhc-CCCCcccCCccceEEEEC-CCCCcccceE
Confidence 211 1111111111 1223457788999999999999999 41 234555555544 3899999999
Q ss_pred EEeCCHHHHHHHHHhhCCccccCcceEeccCCCCCccCCCccCCC--Ccc------cC-cccccCCCCCCCceEEEecCC
Q 015091 221 VRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPK--ASY------QN-SQVAQSDDDPNNTTVFVGNLD 291 (413)
Q Consensus 221 v~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~--~~~------~~-~~~~~~~~~~~~~~l~v~nlp 291 (413)
|.|..+++|..|+ ..|...++-|.|.+.+++..+....-..... ... .. .............+|.+++||
T Consensus 211 vlfa~ee~aq~aL-~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLP 289 (508)
T KOG1365|consen 211 VLFACEEDAQFAL-RKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLP 289 (508)
T ss_pred EEecCHHHHHHHH-HHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCC
Confidence 9999999999999 4566677777887766654322211000000 000 00 000111122336789999999
Q ss_pred CCCCHHHHHHHHhcCCC-eEE--EEe-----eCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEecc
Q 015091 292 SIVTDEHLRELFSQYGQ-LVH--VKI-----PAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354 (413)
Q Consensus 292 ~~~~~~~l~~~f~~~G~-i~~--v~~-----~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 354 (413)
+..+.|||.+||..|-. |.. |.+ .+..|.|||+|.+.|+|..|..+.|.+..+.|.|+|--+.
T Consensus 290 y~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 290 YEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred hhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 99999999999998853 221 222 2346899999999999999999999888889999986554
No 59
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.69 E-value=8.9e-16 Score=136.10 Aligned_cols=182 Identities=19% Similarity=0.327 Sum_probs=144.1
Q ss_pred CceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCC
Q 015091 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (413)
Q Consensus 173 ~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 252 (413)
.+.+||.|||+++.+++|+++|++..|+|+.|.++.|. +|+++|+|.|+|+++|.+++|++.||.+.+.||.|.|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 45699999999999999999999999999999999996 89999999999999999999999999999999999998765
Q ss_pred CCCccCCCc----------------------------------------cCCC------C----cccCc-----------
Q 015091 253 NKKTVSGQQ----------------------------------------QYPK------A----SYQNS----------- 271 (413)
Q Consensus 253 ~~~~~~~~~----------------------------------------~~~~------~----~~~~~----------- 271 (413)
......... .... . .+...
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 521111000 0000 0 00000
Q ss_pred --ccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCceeC
Q 015091 272 --QVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-----GKRCGFVQFADRSCAEEALRMLNGTQLG 344 (413)
Q Consensus 272 --~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~-----~~~~afV~f~~~~~a~~a~~~l~~~~~~ 344 (413)
........+...++||.||...+....|++.|.-.|.|..|.+.. ++++|.++|+.+-+|..||..|++.-+.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 000111334567899999999999999999999999999888853 3789999999999999999999987777
Q ss_pred CeeEEEEeccC
Q 015091 345 GQNIRLSWGRS 355 (413)
Q Consensus 345 g~~l~v~~~~~ 355 (413)
.++..+.+.+-
T Consensus 283 ~~~~~~Rl~~~ 293 (608)
T KOG4212|consen 283 DRRMTVRLDRI 293 (608)
T ss_pred cccceeecccc
Confidence 88888777543
No 60
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.67 E-value=1.2e-15 Score=123.66 Aligned_cols=173 Identities=23% Similarity=0.326 Sum_probs=125.3
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEc-CCCCCCceeEEEEeCCHHHHHHHHHhhCCcccc---Ccc
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVID-RLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS---TRP 245 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~-~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~~ 245 (413)
...-++|||.+||.++...+|..+| ..|-..+.+.+... +.....+-+||+.|.+..+|..|++.|||..|+ +..
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLF-R~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLF-RRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHh-ccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 3446899999999999999999999 56666666666543 333356789999999999999999999999985 677
Q ss_pred eEeccCCCCCccCCCccCC---C-C-------------------------------------------------------
Q 015091 246 MRIGPATNKKTVSGQQQYP---K-A------------------------------------------------------- 266 (413)
Q Consensus 246 i~v~~~~~~~~~~~~~~~~---~-~------------------------------------------------------- 266 (413)
|+|+.+............. . .
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 8887776543222111000 0 0
Q ss_pred -----cccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEee--CCCcEEEEEecCHHHHHHHHHHhc
Q 015091 267 -----SYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP--AGKRCGFVQFADRSCAEEALRMLN 339 (413)
Q Consensus 267 -----~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~--~~~~~afV~f~~~~~a~~a~~~l~ 339 (413)
...............+.+|||.||..+++|++|+.+|+.|-....++|. .+-..||++|++.+.|..|+..|.
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhh
Confidence 0000000001122356799999999999999999999999766555554 345689999999999999999999
Q ss_pred Ccee
Q 015091 340 GTQL 343 (413)
Q Consensus 340 ~~~~ 343 (413)
|..|
T Consensus 270 g~~~ 273 (284)
T KOG1457|consen 270 GNLL 273 (284)
T ss_pred ccee
Confidence 8765
No 61
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.66 E-value=8e-16 Score=122.84 Aligned_cols=85 Identities=35% Similarity=0.657 Sum_probs=79.8
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
...+++|||+||++++++++|+++| +.||.|.++.++.+..+++++|||||+|.+.++|+.|++.|++..|.|+.|+|+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHH-hcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4556789999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 015091 250 PATNKK 255 (413)
Q Consensus 250 ~~~~~~ 255 (413)
++..+.
T Consensus 110 ~a~~~~ 115 (144)
T PLN03134 110 PANDRP 115 (144)
T ss_pred eCCcCC
Confidence 987643
No 62
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.62 E-value=4.2e-14 Score=122.25 Aligned_cols=185 Identities=16% Similarity=0.191 Sum_probs=139.7
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcce--------eEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccc
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG--------AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~--------~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~ 241 (413)
...++.|||.|||.++|.+++.++| +.+|.|.. |++.++. .|..+|=|.+.|.-.+++..|++-|++..|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~-sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVM-SKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHH-HhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 3445679999999999999999999 78887654 4566665 589999999999999999999999999999
Q ss_pred cCcceEeccCCCCCccC--CCccC--------------CCCcccCcccccCCCCCCCceEEEecCCC----CCC------
Q 015091 242 STRPMRIGPATNKKTVS--GQQQY--------------PKASYQNSQVAQSDDDPNNTTVFVGNLDS----IVT------ 295 (413)
Q Consensus 242 ~g~~i~v~~~~~~~~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~v~nlp~----~~~------ 295 (413)
.|+.|+|..|.-..... ..... ...................++|.|.|+=. ..+
T Consensus 209 rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~d 288 (382)
T KOG1548|consen 209 RGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLND 288 (382)
T ss_pred cCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHH
Confidence 99999998885431111 00000 00000111112233445668899998821 112
Q ss_pred -HHHHHHHHhcCCCeEEEEee--CCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCC
Q 015091 296 -DEHLRELFSQYGQLVHVKIP--AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 356 (413)
Q Consensus 296 -~~~l~~~f~~~G~i~~v~~~--~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 356 (413)
.++|++-+++||.|.+|.+. ...|.+-|.|.+.++|..||+.|+|+.|+||.|..+.-..+
T Consensus 289 lkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 289 LKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 36777889999999999996 45899999999999999999999999999999998875543
No 63
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=1.7e-15 Score=125.61 Aligned_cols=151 Identities=18% Similarity=0.354 Sum_probs=126.2
Q ss_pred ceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeeecc
Q 015091 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (413)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~ 161 (413)
..|||++|++.+.+.+|..+|..||.+.+|.+.. +|+||+|.+..+|..|+..||++.|.+.. +.+.|+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~--~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGER--LVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceeccee--eeeeccc
Confidence 4689999999999999999999999999998753 79999999999999999999999998766 5555554
Q ss_pred CC------CC-------C---CCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCC
Q 015091 162 FG------AG-------E---KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGD 225 (413)
Q Consensus 162 ~~------~~-------~---~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~ 225 (413)
.. .. . .......+.+++.++...+.+.+|.+.| ..+|.+....+ ..+++||+|.+
T Consensus 72 ~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~-~~~g~~~~~~~--------~~~~~~v~Fs~ 142 (216)
T KOG0106|consen 72 GKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHF-RPAGEVTYVDA--------RRNFAFVEFSE 142 (216)
T ss_pred ccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhh-cccCCCchhhh--------hccccceeehh
Confidence 21 00 0 1123456789999999999999999999 89999854444 36789999999
Q ss_pred HHHHHHHHHhhCCccccCcceEeccC
Q 015091 226 ESEQLRAMTEMNGVFCSTRPMRIGPA 251 (413)
Q Consensus 226 ~~~a~~a~~~l~~~~~~g~~i~v~~~ 251 (413)
.++|..|++.|++..+.++.|.+...
T Consensus 143 ~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 143 QEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhhhhcchhccchhhcCceeeeccc
Confidence 99999999999999999999999433
No 64
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=4.1e-15 Score=127.45 Aligned_cols=78 Identities=26% Similarity=0.431 Sum_probs=71.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEecc
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 354 (413)
....++|+|+|||+...+-||+.+|.+||.|.+|+|..+ |||+||+|++.++|++|..+|||..|.||+|+|..+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 345688999999999999999999999999999999643 8999999999999999999999999999999999886
Q ss_pred CC
Q 015091 355 SP 356 (413)
Q Consensus 355 ~~ 356 (413)
.+
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 54
No 65
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=6e-15 Score=121.52 Aligned_cols=84 Identities=27% Similarity=0.447 Sum_probs=78.1
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
..+.++|.|.||+.++++++|+++|..||.|..|.+.+|+.||.++|||||.|.+.++|.+||..|||.-+ .++.+++
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy--d~LILrv 263 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY--DNLILRV 263 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc--ceEEEEE
Confidence 45778899999999999999999999999999999999999999999999999999999999999999888 5688888
Q ss_pred eeccCC
Q 015091 158 NWASFG 163 (413)
Q Consensus 158 ~~~~~~ 163 (413)
+|+..+
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 888654
No 66
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=3.5e-15 Score=122.51 Aligned_cols=82 Identities=26% Similarity=0.451 Sum_probs=72.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
+..-.+|||++|+|++++++|+++|++||+|++..|+.|+.+|++|||+||.|++.++|.+|++. -+-.|+|++..+++
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 34457899999999999999999999999999999999999999999999999999999999975 44467777777766
Q ss_pred eec
Q 015091 158 NWA 160 (413)
Q Consensus 158 ~~~ 160 (413)
...
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 544
No 67
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=9.7e-15 Score=107.80 Aligned_cols=74 Identities=36% Similarity=0.659 Sum_probs=69.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCC------cEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEecc
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGK------RCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~------~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 354 (413)
.+++|||+||...++||+|.++|+++|.|..|.+.-+| |||||+|.+.++|..|++-++|..++.+.|++.|.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 67999999999999999999999999999999986553 799999999999999999999999999999999954
No 68
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.57 E-value=1.5e-13 Score=118.81 Aligned_cols=169 Identities=16% Similarity=0.300 Sum_probs=132.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceE--------EEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCC
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVV--------AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~--------~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 149 (413)
+.-+..|||+|||.++|.+++.++|++||.|. .|++.++. .|..+|=|++.|...+++..|++.|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 34456699999999999999999999999874 48888886 4999999999999999999999999999996
Q ss_pred CCCcceeeeeccCCC----------------------------------CCCCCCCCCceEEecCCCC----CCC-----
Q 015091 150 NGEQNFRLNWASFGA----------------------------------GEKRDDTPDHTIFVGDLAA----DVT----- 186 (413)
Q Consensus 150 ~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~v~~lp~----~~~----- 186 (413)
+. .+++..+.... .........++|.+.||=. ..+
T Consensus 210 g~--~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~ 287 (382)
T KOG1548|consen 210 GK--KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLN 287 (382)
T ss_pred Cc--EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHH
Confidence 54 44444432110 0011234467899998722 222
Q ss_pred --HHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCCC
Q 015091 187 --DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254 (413)
Q Consensus 187 --~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 254 (413)
.++|++.. ..||.|.+|.+.- ..+.|.+-|.|.+.++|..||+.|+|..|+||.|.......+
T Consensus 288 dlkedl~eec-~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 288 DLKEDLTEEC-EKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHH-HHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 35666677 7899999887753 346889999999999999999999999999999998877664
No 69
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=2.3e-14 Score=112.11 Aligned_cols=78 Identities=37% Similarity=0.588 Sum_probs=72.0
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCCC
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 358 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 358 (413)
..++|||+||+..+++.||...|..||.|.+|.|.+. .+||||||++..+|..|+..|+|+.|.|..|+|++......
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 3688999999999999999999999999999998765 79999999999999999999999999999999999876543
No 70
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=1.4e-14 Score=101.78 Aligned_cols=65 Identities=43% Similarity=0.755 Sum_probs=61.7
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 015091 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 349 (413)
Q Consensus 285 l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 349 (413)
|||+|||.++++++|+++|+.||.|..+.+..+ +++|||+|++.++|.+|+..|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999763 78999999999999999999999999999986
No 71
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=1.9e-14 Score=100.99 Aligned_cols=67 Identities=34% Similarity=0.654 Sum_probs=63.4
Q ss_pred eeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCC
Q 015091 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG 151 (413)
Q Consensus 84 l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~ 151 (413)
|||+|||.++|+++|+++|+.||.|..+++..+ .++..+++|||+|.+.++|.+|++.++|..+.++
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~ 67 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGR 67 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECcc
Confidence 799999999999999999999999999999998 5789999999999999999999999999988664
No 72
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.4e-14 Score=118.94 Aligned_cols=81 Identities=33% Similarity=0.463 Sum_probs=73.9
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEecc
Q 015091 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (413)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 250 (413)
..-++||||+|+|.+..++|+++| ++||+|++..++.|+.+|++|||+||.|.|.++|.+|++. -+-.|+||+..|+.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yF-eqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYF-EQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHH-HHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 344689999999999999999999 9999999999999999999999999999999999999953 45678999999988
Q ss_pred CCC
Q 015091 251 ATN 253 (413)
Q Consensus 251 ~~~ 253 (413)
+..
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 766
No 73
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.53 E-value=1.5e-12 Score=122.25 Aligned_cols=170 Identities=13% Similarity=0.075 Sum_probs=116.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee-
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR- 156 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~- 156 (413)
..+.+.+-+.+.+.+.++.+++++|... .|.++.|..+...+.-.|-++|+|....++++|++. |...+..+-..+.
T Consensus 308 v~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P 385 (944)
T KOG4307|consen 308 VSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGP 385 (944)
T ss_pred cchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecC
Confidence 3456778888999999999999999654 455566655554444469999999999999999864 2222211111000
Q ss_pred ---eee---------------------------ccCCCCCC--CCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcce-
Q 015091 157 ---LNW---------------------------ASFGAGEK--RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG- 203 (413)
Q Consensus 157 ---~~~---------------------------~~~~~~~~--~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~- 203 (413)
..| +......+ ........|||..||..+++.++.++| +..-.|++
T Consensus 386 ~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f-~~~~~Ved~ 464 (944)
T KOG4307|consen 386 PGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKF-MGAAAVEDF 464 (944)
T ss_pred CCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhh-hhhhhhhhe
Confidence 000 00001111 223446789999999999999999999 55556666
Q ss_pred eEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccC
Q 015091 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (413)
Q Consensus 204 ~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 251 (413)
|.+...+ +++.++.|||+|..++++.+|....+.++++.+.|+|...
T Consensus 465 I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 465 IELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred eEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 5554444 7888999999999988888887666667777777777544
No 74
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.52 E-value=6.4e-14 Score=119.49 Aligned_cols=73 Identities=27% Similarity=0.404 Sum_probs=68.6
Q ss_pred CceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC---CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccC
Q 015091 282 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355 (413)
Q Consensus 282 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~---~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 355 (413)
.++|||+||+..+++++|+++|+.||.|++|.|..+ +++|||+|.+.++|..|+. |+|..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 478999999999999999999999999999999765 6899999999999999996 999999999999999764
No 75
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.51 E-value=8.3e-14 Score=111.74 Aligned_cols=76 Identities=33% Similarity=0.576 Sum_probs=71.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEec
Q 015091 280 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 353 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 353 (413)
.....|.|.||.+-++.++|+.+|++||.|-+|.|+++ +|||||.|.+..+|+.|+.+|+|..|+|+.|+|.+|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34578999999999999999999999999999999876 799999999999999999999999999999999988
Q ss_pred cC
Q 015091 354 RS 355 (413)
Q Consensus 354 ~~ 355 (413)
+-
T Consensus 91 ry 92 (256)
T KOG4207|consen 91 RY 92 (256)
T ss_pred hc
Confidence 74
No 76
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=6.5e-14 Score=109.54 Aligned_cols=75 Identities=23% Similarity=0.410 Sum_probs=67.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeee
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 158 (413)
.-.+.|||+||+..+++.||+.+|..||.|.+|+|.+.+. |||||+|+++.+|+.|+..|+|+.|.+..+.|++.
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP-----GfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP-----GFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC-----CceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 3478999999999999999999999999999999998765 99999999999999999999999997766666554
No 77
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.49 E-value=1.8e-13 Score=95.87 Aligned_cols=65 Identities=34% Similarity=0.698 Sum_probs=59.6
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 015091 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 349 (413)
Q Consensus 285 l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 349 (413)
|+|+|||..+++++|+++|+.||.|..+.+..+ +++|||+|.+.++|.+|+..+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999776 68999999999999999999999999999985
No 78
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=2.3e-13 Score=96.62 Aligned_cols=75 Identities=23% Similarity=0.411 Sum_probs=69.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC---CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEecc
Q 015091 280 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~---~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 354 (413)
.-++.|||.|||+++|.|++.++|.+||.|..|+|... +|.|||.|++..+|.+|+..|+|..+.++.|.|-+-.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 35688999999999999999999999999999999754 7899999999999999999999999999999997744
No 79
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.48 E-value=1.2e-13 Score=96.77 Aligned_cols=67 Identities=34% Similarity=0.587 Sum_probs=61.3
Q ss_pred eeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCC
Q 015091 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG 151 (413)
Q Consensus 84 l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~ 151 (413)
|+|+|||+++++++|+++|+.+|.|..+++..++. ++.+++|||+|.+.++|.+|++.+++..+.++
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~ 67 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGR 67 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCE
Confidence 79999999999999999999999999999999986 89999999999999999999999998888664
No 80
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.1e-13 Score=102.36 Aligned_cols=83 Identities=22% Similarity=0.358 Sum_probs=77.8
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEecc
Q 015091 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (413)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 250 (413)
..+++|||+||+..++|+.|.++| +.+|+|..|.+-.|+.+...-|||||+|.+.++|+.|++.+++..++.+.|++.+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELF-s~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELF-SKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHH-HhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 346799999999999999999999 8999999999989998999999999999999999999999999999999999998
Q ss_pred CCCC
Q 015091 251 ATNK 254 (413)
Q Consensus 251 ~~~~ 254 (413)
...-
T Consensus 113 D~GF 116 (153)
T KOG0121|consen 113 DAGF 116 (153)
T ss_pred cccc
Confidence 7654
No 81
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.48 E-value=5.5e-14 Score=112.75 Aligned_cols=82 Identities=23% Similarity=0.415 Sum_probs=76.7
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
..+...+|.|.||-+.++.++|+.+|++||.|.+|.|.+|+.|+.++|||||.|.+..+|++|++.|+|.+|+++.+.|.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 55678899999999999999999999999999999999999999999999999999999999999999999998877666
Q ss_pred ee
Q 015091 157 LN 158 (413)
Q Consensus 157 ~~ 158 (413)
+.
T Consensus 89 ~a 90 (256)
T KOG4207|consen 89 MA 90 (256)
T ss_pred hh
Confidence 53
No 82
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.3e-13 Score=112.22 Aligned_cols=86 Identities=24% Similarity=0.408 Sum_probs=81.2
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceE
Q 015091 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (413)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 247 (413)
+....+++|-|.||+.++++++|+++| ..||.|..+.+.+|+.||.++|||||.|.+.++|.+||+.|||.-++..-|+
T Consensus 184 R~R~D~~tvRvtNLsed~~E~dL~eLf-~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILr 262 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMREDDLEELF-RPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILR 262 (270)
T ss_pred ccCCccceeEEecCccccChhHHHHHh-hccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEE
Confidence 345578899999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 015091 248 IGPATNK 254 (413)
Q Consensus 248 v~~~~~~ 254 (413)
|+|+.++
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9998764
No 83
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.46 E-value=7.6e-13 Score=120.38 Aligned_cols=152 Identities=22% Similarity=0.329 Sum_probs=116.0
Q ss_pred cceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeee-
Q 015091 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW- 159 (413)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~- 159 (413)
.++|||+||+..+|+++|+++|..||.|..+.+..++.+++++|||||+|.+.++|..|++.+++..+.++.+.+....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999998899999999999999999999999999999988777776643
Q ss_pred -ccCCCCC----------------CCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEE
Q 015091 160 -ASFGAGE----------------KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVR 222 (413)
Q Consensus 160 -~~~~~~~----------------~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~ 222 (413)
....... .........+++.+++..++..++...| ..+|.+....+.............++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLF-KSRGDIVRASLPPSKDGKIPKSRSFVG 273 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhc-cccccceeeeccCCCCCcccccccccc
Confidence 1111111 1223445789999999999999999999 888888655554443333333333333
Q ss_pred eCCHHHHHHHH
Q 015091 223 FGDESEQLRAM 233 (413)
Q Consensus 223 f~~~~~a~~a~ 233 (413)
+.....+...+
T Consensus 274 ~~~~~~~~~~~ 284 (306)
T COG0724 274 NEASKDALESN 284 (306)
T ss_pred hhHHHhhhhhh
Confidence 33333333333
No 84
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=8.9e-15 Score=114.84 Aligned_cols=87 Identities=23% Similarity=0.449 Sum_probs=80.3
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
-..+..|||||||.+.|+.+|.-.| ++||+|.+|.+++|..||+++||||+.|++..+...|+..|||..+.||.|+|.
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VF-SqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVF-SQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEe-eccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 3556789999999999999999999 999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcc
Q 015091 250 PATNKKTV 257 (413)
Q Consensus 250 ~~~~~~~~ 257 (413)
........
T Consensus 111 Hv~~Yk~p 118 (219)
T KOG0126|consen 111 HVSNYKKP 118 (219)
T ss_pred ecccccCC
Confidence 76555443
No 85
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.45 E-value=2.1e-12 Score=117.46 Aligned_cols=144 Identities=29% Similarity=0.496 Sum_probs=115.3
Q ss_pred CceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCC
Q 015091 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (413)
Q Consensus 173 ~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 252 (413)
.++|||+||+.++++++|.++| +.||.+..+.+..+..++.++|||||+|.+.++|..|++.+++..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F-~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELF-KKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHH-HhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6899999999999999999999 899999999999998899999999999999999999999999999999999999975
Q ss_pred C-CCccCCCcc-CCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC
Q 015091 253 N-KKTVSGQQQ-YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG 317 (413)
Q Consensus 253 ~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~ 317 (413)
. ......... ......................+++.+++..++..++...|..+|.+..+.+...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 194 PASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred cccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 4 111111000 0000011112223444556788999999999999999999999999977777544
No 86
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1.2e-12 Score=112.55 Aligned_cols=84 Identities=21% Similarity=0.407 Sum_probs=72.3
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
.....++|+|+|||+...+-||+.+|.+||+|.+|.|+.+- .-||||+||.|++.++|++|.++|+|..+.|++ |+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRk--IE 167 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRK--IE 167 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceE--EE
Confidence 34556889999999999999999999999999999999875 468899999999999999999999999997755 44
Q ss_pred eeeccCCC
Q 015091 157 LNWASFGA 164 (413)
Q Consensus 157 ~~~~~~~~ 164 (413)
++.+....
T Consensus 168 Vn~ATarV 175 (376)
T KOG0125|consen 168 VNNATARV 175 (376)
T ss_pred Eeccchhh
Confidence 54444443
No 87
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=3.2e-13 Score=114.54 Aligned_cols=87 Identities=25% Similarity=0.503 Sum_probs=80.7
Q ss_pred CCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcce
Q 015091 167 KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (413)
Q Consensus 167 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 246 (413)
.....+-+||||+.|+.+++|++|+..| +.||.|+.|.++.+..||+++|||||+|.++.+...|.+..++..|+|+.|
T Consensus 95 ~a~gDPy~TLFv~RLnydT~EskLrreF-~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 95 NAIGDPYKTLFVARLNYDTSESKLRREF-EKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred cccCCccceeeeeeccccccHHHHHHHH-HhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 3445778899999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 015091 247 RIGPATNK 254 (413)
Q Consensus 247 ~v~~~~~~ 254 (413)
.|.+....
T Consensus 174 ~VDvERgR 181 (335)
T KOG0113|consen 174 LVDVERGR 181 (335)
T ss_pred EEEecccc
Confidence 98876543
No 88
>PLN03213 repressor of silencing 3; Provisional
Probab=99.43 E-value=6.6e-13 Score=119.93 Aligned_cols=76 Identities=20% Similarity=0.368 Sum_probs=70.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC--CcEEEEEecCH--HHHHHHHHHhcCceeCCeeEEEEeccC
Q 015091 280 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG--KRCGFVQFADR--SCAEEALRMLNGTQLGGQNIRLSWGRS 355 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~--~~~afV~f~~~--~~a~~a~~~l~~~~~~g~~l~v~~~~~ 355 (413)
....+|||+||.+.++++||+.+|+.||.|.+|.|++. ||||||+|.+. +++.+||..|+|.++.|+.|+|..|++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 45578999999999999999999999999999999864 89999999987 789999999999999999999998876
No 89
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.41 E-value=8.4e-13 Score=112.71 Aligned_cols=73 Identities=16% Similarity=0.343 Sum_probs=65.2
Q ss_pred cceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
.++|||+||++.+|+++|+++|+.||.|.+|.|..++. .+|||||+|.+.++|..|+ .|||..|.++.+.|..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEe
Confidence 67999999999999999999999999999999998863 5699999999999999999 5999999766555544
No 90
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.41 E-value=1.7e-12 Score=86.30 Aligned_cols=55 Identities=36% Similarity=0.646 Sum_probs=51.8
Q ss_pred HHHHHhcCCCeEEEEeeCCC-cEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEec
Q 015091 299 LRELFSQYGQLVHVKIPAGK-RCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 353 (413)
Q Consensus 299 l~~~f~~~G~i~~v~~~~~~-~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 353 (413)
|+++|++||.|.++.+..++ ++|||+|.+.++|.+|++.|||..++|+.|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999999887 99999999999999999999999999999999985
No 91
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.41 E-value=1.5e-12 Score=109.15 Aligned_cols=73 Identities=26% Similarity=0.366 Sum_probs=67.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC---CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEecc
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~---~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 354 (413)
...+|||+||+..+|+++|++||+.||.|.+|.|.++ +++|||+|.+.++|..|+. |+|..|.++.|.|.-..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4589999999999999999999999999999999876 4799999999999999996 89999999999998654
No 92
>smart00362 RRM_2 RNA recognition motif.
Probab=99.39 E-value=2.9e-12 Score=90.07 Aligned_cols=68 Identities=49% Similarity=0.815 Sum_probs=63.9
Q ss_pred eEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCC----cEEEEEecCHHHHHHHHHHhcCceeCCeeEEEE
Q 015091 284 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGK----RCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 351 (413)
Q Consensus 284 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~----~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 351 (413)
+|+|+||+..+++++|+++|+.||.|.++.+..++ ++|||+|.+.++|.+|+..+++..++|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998765 999999999999999999999999999999874
No 93
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.39 E-value=6.3e-12 Score=104.42 Aligned_cols=169 Identities=28% Similarity=0.434 Sum_probs=131.3
Q ss_pred ceeeecCCCCCCCHHH-H--HHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeee
Q 015091 82 RTLWIGDLQYWMDETY-L--NTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (413)
Q Consensus 82 ~~l~v~~lp~~~~~~~-l--~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 158 (413)
-..+++++-.++..+- | ...|+.+-.+...+++++. -+..++++|+.|.....-.++-..-+++.+. ...|++.
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~--~~~VR~a 173 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIG--KPPVRLA 173 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhcccccccccc--Ccceeec
Confidence 3445566555554443 3 5667777777777777775 4778899999999888888887766666663 3335544
Q ss_pred eccCCCC--CCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhh
Q 015091 159 WASFGAG--EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (413)
Q Consensus 159 ~~~~~~~--~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l 236 (413)
-.....+ .........+||+|.|.-+++++-|...| ++|-.....+++++..||+++||+||.|.+.+++..|+.++
T Consensus 174 ~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf-~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 174 AGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAF-KKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred cccccCCcccccCccccceeecccccccccHHHHHHHH-HhccchhhccccccccccccccceeeeecCHHHHHHHHHhh
Confidence 3332222 22345566789999999999999999999 89999999999999999999999999999999999999999
Q ss_pred CCccccCcceEeccCCCC
Q 015091 237 NGVFCSTRPMRIGPATNK 254 (413)
Q Consensus 237 ~~~~~~g~~i~v~~~~~~ 254 (413)
++..++.+.|.+..+..+
T Consensus 253 ~gkyVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 253 NGKYVGSRPIKLRKSEWK 270 (290)
T ss_pred cccccccchhHhhhhhHH
Confidence 999999999988766554
No 94
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=5.2e-14 Score=110.57 Aligned_cols=81 Identities=23% Similarity=0.505 Sum_probs=74.2
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcce
Q 015091 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (413)
Q Consensus 76 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~ 155 (413)
..-.++.-|||+|||.++||.||.-.|++||+|++|.+++|+.||+|+||||+.|++..+...|+..|||..|.+ +.|
T Consensus 30 ~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g--Rti 107 (219)
T KOG0126|consen 30 QEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG--RTI 107 (219)
T ss_pred hhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc--eeE
Confidence 345678899999999999999999999999999999999999999999999999999999999999999999965 455
Q ss_pred eee
Q 015091 156 RLN 158 (413)
Q Consensus 156 ~~~ 158 (413)
+++
T Consensus 108 rVD 110 (219)
T KOG0126|consen 108 RVD 110 (219)
T ss_pred Eee
Confidence 554
No 95
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=5.6e-12 Score=107.12 Aligned_cols=83 Identities=20% Similarity=0.384 Sum_probs=76.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEec
Q 015091 280 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 353 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 353 (413)
.+-+||||.-|+.+++|.+|+..|+.||.|+.|.|.++ +|||||+|++..+...|.+..+|..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 56789999999999999999999999999999999765 899999999999999999999999999999999998
Q ss_pred cCCCCCCCC
Q 015091 354 RSPSNKQAQ 362 (413)
Q Consensus 354 ~~~~~~~~~ 362 (413)
+....+...
T Consensus 179 RgRTvkgW~ 187 (335)
T KOG0113|consen 179 RGRTVKGWL 187 (335)
T ss_pred ccccccccc
Confidence 877666543
No 96
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=2.3e-12 Score=91.64 Aligned_cols=73 Identities=16% Similarity=0.315 Sum_probs=65.5
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCC
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~ 152 (413)
++..++-|||+|||..+|.+++.++|.+||.|..|+|-.. ...+|.|||.|++..+|.+|++.|+|..+.++-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ry 86 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRY 86 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCce
Confidence 4567889999999999999999999999999999999654 456899999999999999999999999886643
No 97
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=1.3e-11 Score=113.94 Aligned_cols=154 Identities=22% Similarity=0.230 Sum_probs=100.8
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
....++|+|-|||..|++++|+++|+.||+|..|+.-..+ ++.+||+|.|..+|+.|++.|++..+.++.+. +.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k-~~ 145 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-----RGIVFVEFYDVRDAERALKALNRREIAGKRIK-RP 145 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-----CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc-CC
Confidence 5567899999999999999999999999999998765544 48999999999999999999999999776554 11
Q ss_pred eeccCCCC-----------------CCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEE
Q 015091 158 NWASFGAG-----------------EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGF 220 (413)
Q Consensus 158 ~~~~~~~~-----------------~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~af 220 (413)
..+..... .....-....+++ .|.+..+...++..+ +.+|.+.. +. ++.-...-|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~-~~~~~~~~-~~-----~~~~~hq~~ 217 (549)
T KOG4660|consen 146 GGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHIS-SVDGSSPG-RE-----TPLLNHQRF 217 (549)
T ss_pred CcccccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcch-hccCcccc-cc-----ccchhhhhh
Confidence 11100000 0000111223333 387777775555555 66776654 22 333233567
Q ss_pred EEeCCHHHHHHHHHhhCCccccCcce
Q 015091 221 VRFGDESEQLRAMTEMNGVFCSTRPM 246 (413)
Q Consensus 221 v~f~~~~~a~~a~~~l~~~~~~g~~i 246 (413)
++|.+..++..+.... |..+.+...
T Consensus 218 ~~~~~~~s~a~~~~~~-G~~~s~~~~ 242 (549)
T KOG4660|consen 218 VEFADNRSYAFSEPRG-GFLISNSSG 242 (549)
T ss_pred hhhccccchhhcccCC-ceecCCCCc
Confidence 7787777775555422 444444443
No 98
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.36 E-value=2.8e-12 Score=107.60 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=64.9
Q ss_pred CcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
...+|+|+||++.+|+++|+++|+.||.|.+|+|+++. +++++|||+|+++++|+.|+ .|+|..|.+..+.|.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It 76 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCIT 76 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEE
Confidence 46899999999999999999999999999999999884 55689999999999999999 799999976654443
No 99
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.34 E-value=9.9e-13 Score=121.88 Aligned_cols=82 Identities=32% Similarity=0.561 Sum_probs=79.1
Q ss_pred ceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCC
Q 015091 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (413)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 253 (413)
+.+||||+|+++++++|.++| +..|.|.+++++.|+.+|+.+||+|++|.+.++++.|++.||+..+.|+.|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~-~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIF-SGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHH-hccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 789999999999999999999 8999999999999999999999999999999999999999999999999999999877
Q ss_pred CCc
Q 015091 254 KKT 256 (413)
Q Consensus 254 ~~~ 256 (413)
.+.
T Consensus 98 ~~~ 100 (435)
T KOG0108|consen 98 RKN 100 (435)
T ss_pred cch
Confidence 654
No 100
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.3e-12 Score=105.94 Aligned_cols=80 Identities=29% Similarity=0.537 Sum_probs=73.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEec
Q 015091 280 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 353 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 353 (413)
...++|||++|.+.+++..|...|-.||.|.+|.++-+ |+|+||+|+..|+|..||..||+.++-||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34689999999999999999999999999999999754 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 015091 354 RSPSNK 359 (413)
Q Consensus 354 ~~~~~~ 359 (413)
++..-+
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 986443
No 101
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=6.7e-12 Score=116.98 Aligned_cols=177 Identities=16% Similarity=0.304 Sum_probs=132.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
......++|++||..+++..++++...||.+....++.+..+|-++||||.+|.++.....|+..|||+.+.++.+.+..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 44556799999999999999999999999999999999999999999999999999999999999999998776666555
Q ss_pred eeccCCCCCC------------------CCCCCCceEEecCC------CCCCCH----HHHHHHHhhhCCCcceeEEEEc
Q 015091 158 NWASFGAGEK------------------RDDTPDHTIFVGDL------AADVTD----YMLQETFRARYPSTKGAKVVID 209 (413)
Q Consensus 158 ~~~~~~~~~~------------------~~~~~~~~l~v~~l------p~~~~~----~~l~~~f~~~~g~v~~~~~~~~ 209 (413)
.......... ....++..|.+.|+ -++..- ++++..+ +.||.|..|.+.+.
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec-~k~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTEC-AKFGAVRSVEIPRP 444 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHh-cccCceeEEecCCC
Confidence 4332111100 01112222333332 211111 2344455 58899998888765
Q ss_pred C---CCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCCCC
Q 015091 210 R---LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255 (413)
Q Consensus 210 ~---~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 255 (413)
- ...-..|..||+|.+.+++++|.++|+|.+|.++.+...|....+
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDk 493 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDK 493 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHH
Confidence 2 223356778999999999999999999999999999998876543
No 102
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=5e-12 Score=94.40 Aligned_cols=83 Identities=20% Similarity=0.418 Sum_probs=74.3
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeee
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 158 (413)
-+.-.|||.++...+|+++|.+.|..||.|..+++..|+.||-.+|||+|+|++.+.|++|++.+||..+.+ ..+.++
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~--q~v~VD 147 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG--QNVSVD 147 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC--CceeEE
Confidence 345678999999999999999999999999999999999999999999999999999999999999999865 556666
Q ss_pred eccCC
Q 015091 159 WASFG 163 (413)
Q Consensus 159 ~~~~~ 163 (413)
|+-.+
T Consensus 148 w~Fv~ 152 (170)
T KOG0130|consen 148 WCFVK 152 (170)
T ss_pred EEEec
Confidence 66443
No 103
>smart00362 RRM_2 RNA recognition motif.
Probab=99.32 E-value=7.3e-12 Score=87.99 Aligned_cols=68 Identities=31% Similarity=0.582 Sum_probs=62.4
Q ss_pred eeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCC
Q 015091 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (413)
Q Consensus 83 ~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~ 152 (413)
+|+|+|||..+++++|+++|+.||.|..+.+..++ +.++++|||+|.+.++|.+|++.+++..+.+..
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~ 68 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRP 68 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEE
Confidence 58999999999999999999999999999999876 778899999999999999999999998886543
No 104
>smart00360 RRM RNA recognition motif.
Probab=99.30 E-value=1.1e-11 Score=86.73 Aligned_cols=67 Identities=31% Similarity=0.608 Sum_probs=61.9
Q ss_pred ecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCC
Q 015091 86 IGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (413)
Q Consensus 86 v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~ 152 (413)
|+||+..+++++|+++|+.||.|..+++..++.+++++++|||+|.+.++|.+|++.+++..+.++.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~ 67 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRP 67 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcE
Confidence 6799999999999999999999999999998878899999999999999999999999988886543
No 105
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2e-12 Score=104.85 Aligned_cols=87 Identities=26% Similarity=0.483 Sum_probs=81.7
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEecc
Q 015091 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (413)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 250 (413)
...++||||+|..++++.-|...| -.||.|.+|.+..|-.++++|||+||+|...|+|..||..||+..+.||.|+|++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAF-IPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAF-IPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhcc-ccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 346799999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccC
Q 015091 251 ATNKKTVS 258 (413)
Q Consensus 251 ~~~~~~~~ 258 (413)
+.+.+...
T Consensus 87 AkP~kike 94 (298)
T KOG0111|consen 87 AKPEKIKE 94 (298)
T ss_pred cCCccccC
Confidence 98876544
No 106
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.29 E-value=2.9e-11 Score=85.37 Aligned_cols=69 Identities=49% Similarity=0.815 Sum_probs=64.6
Q ss_pred eEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEe
Q 015091 284 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 284 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
+|+|+|||..+++++|+++|+.||.|..+.+..+ +++|||+|.+.++|..|+..+++..++|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999765 68999999999999999999999999999999875
No 107
>PLN03213 repressor of silencing 3; Provisional
Probab=99.29 E-value=1e-11 Score=112.38 Aligned_cols=80 Identities=16% Similarity=0.308 Sum_probs=72.4
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCH--HHHHHHHHhhCCccccCcceE
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE--SEQLRAMTEMNGVFCSTRPMR 247 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~--~~a~~a~~~l~~~~~~g~~i~ 247 (413)
.....+||||||++++++++|...| +.||.|.++.|++ .+| ||||||+|.+. +++.+||..||+..+.|+.|+
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravF-SeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIF-SPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 3455789999999999999999999 8999999999994 466 99999999987 789999999999999999999
Q ss_pred eccCCCC
Q 015091 248 IGPATNK 254 (413)
Q Consensus 248 v~~~~~~ 254 (413)
|..+...
T Consensus 82 VNKAKP~ 88 (759)
T PLN03213 82 LEKAKEH 88 (759)
T ss_pred EeeccHH
Confidence 9998764
No 108
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.4e-10 Score=106.34 Aligned_cols=154 Identities=21% Similarity=0.337 Sum_probs=114.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCC--Cccc---EEEEEEcCHHHHHHHHHHhCCCcCCCCC
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTG--QIEG---YGFIEFISRAGAERVLQTFNGTPMPNGE 152 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g--~~~g---~afV~f~~~~~A~~a~~~l~g~~~~~~~ 152 (413)
..-++.|||++||++++|+.|...|..||.+.-=.-.+....+ ..+| |+|+.|+++.++..-+....- ...+
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~ 332 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGN 332 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccc
Confidence 4457889999999999999999999999975322211111111 2345 999999999999888765322 1122
Q ss_pred cceeeeeccCCC-----------------CCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCC
Q 015091 153 QNFRLNWASFGA-----------------GEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRT 215 (413)
Q Consensus 153 ~~~~~~~~~~~~-----------------~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~ 215 (413)
..+++.....+. .....-.+.+|||||+||.-++.++|..+|..-||.|.-+-|-.|++-+..
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYP 412 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYP 412 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCC
Confidence 222222222111 122345678999999999999999999999779999999999999888999
Q ss_pred ceeEEEEeCCHHHHHHHHH
Q 015091 216 KGYGFVRFGDESEQLRAMT 234 (413)
Q Consensus 216 ~g~afv~f~~~~~a~~a~~ 234 (413)
+|-|-|.|.+..+-.+||.
T Consensus 413 kGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 413 KGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CCcceeeecccHHHHHHHh
Confidence 9999999999999999995
No 109
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=2.5e-12 Score=104.34 Aligned_cols=142 Identities=22% Similarity=0.341 Sum_probs=117.7
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
.....+||||.|+-..++++.|.++|-+.|.|..|.|..++ .++.+ ||||.|+++-++.-|++.+||..+.+..+.+
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~- 81 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR- 81 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhc-
Confidence 34568999999999999999999999999999999998886 46666 9999999999999999999999887755444
Q ss_pred eeeccCCCCCCCCCCCCceEEecC----CCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHH
Q 015091 157 LNWASFGAGEKRDDTPDHTIFVGD----LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRA 232 (413)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~v~~----lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a 232 (413)
+++.|+ |...++++.+.+.| +..+.++.+++..+. +|+++.++|+.+...-+.-.+
T Consensus 82 ------------------~~r~G~shapld~r~~~ei~~~v~-s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~ 141 (267)
T KOG4454|consen 82 ------------------TLRCGNSHAPLDERVTEEILYEVF-SQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFA 141 (267)
T ss_pred ------------------ccccCCCcchhhhhcchhhheeee-cccCCCCCccccccc-cCCccCccchhhhhhhcCcHH
Confidence 445566 77888899899999 889999999988876 588899999988776666666
Q ss_pred HHhhCCccc
Q 015091 233 MTEMNGVFC 241 (413)
Q Consensus 233 ~~~l~~~~~ 241 (413)
+....+...
T Consensus 142 ~~~y~~l~~ 150 (267)
T KOG4454|consen 142 LDLYQGLEL 150 (267)
T ss_pred hhhhcccCc
Confidence 654444433
No 110
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.3e-10 Score=106.38 Aligned_cols=165 Identities=24% Similarity=0.317 Sum_probs=111.3
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEE-cCCCC--CCce---eEEEEeCCHHHHHHHHHhhCCccc
Q 015091 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVI-DRLTG--RTKG---YGFVRFGDESEQLRAMTEMNGVFC 241 (413)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~-~~~~g--~~~g---~afv~f~~~~~a~~a~~~l~~~~~ 241 (413)
+...-+++||||+||++++|+.|...| ..||.+. +.... ....+ -.+| |+|+.|+++.++...+.++.. .-
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F-~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~ 330 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASF-GQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GE 330 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhc-ccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cc
Confidence 345567899999999999999999999 8999764 22221 11111 2456 999999999999888766553 11
Q ss_pred cCcceEeccCCCCCccCCCccCCCCccc-CcccccCCCCCCCceEEEecCCCCCCHHHHHHHHh-cCCCeEEEEeeCC--
Q 015091 242 STRPMRIGPATNKKTVSGQQQYPKASYQ-NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFS-QYGQLVHVKIPAG-- 317 (413)
Q Consensus 242 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~~~~~-- 317 (413)
.+-.+.|.....+.... ......... .-.......-...+||||++||.-++.++|..+|+ .||.|+.+-|..|
T Consensus 331 ~~~yf~vss~~~k~k~V--QIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k 408 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKEV--QIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPK 408 (520)
T ss_pred cceEEEEecCcccccce--eEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcc
Confidence 22222232222222110 000000000 00001222334678999999999999999999999 8999999999877
Q ss_pred ----CcEEEEEecCHHHHHHHHHH
Q 015091 318 ----KRCGFVQFADRSCAEEALRM 337 (413)
Q Consensus 318 ----~~~afV~f~~~~~a~~a~~~ 337 (413)
+|-|=|+|.+..+-.+||.+
T Consensus 409 ~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 409 LKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCCCCCcceeeecccHHHHHHHhh
Confidence 68899999999999999986
No 111
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.25 E-value=5.1e-11 Score=104.58 Aligned_cols=168 Identities=14% Similarity=0.223 Sum_probs=121.6
Q ss_pred CcceeeecCCCCCCCHHHHHHHhhc---c-CceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcce
Q 015091 80 EIRTLWIGDLQYWMDETYLNTCFAH---T-GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (413)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~---~-G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~ 155 (413)
..-.|.+++||+++++.++.++|.. . |..+.|-+++.. +|+..|-|||.|..+++|+.|+.+-.. .+ ..+-|
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq-~i--GqRYI 235 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQ-NI--GQRYI 235 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHH-HH--hHHHH
Confidence 3456889999999999999999962 2 346777777765 699999999999999999999964211 11 11111
Q ss_pred eeeec-----------------------cCCC-CC---CCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcce---eE
Q 015091 156 RLNWA-----------------------SFGA-GE---KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG---AK 205 (413)
Q Consensus 156 ~~~~~-----------------------~~~~-~~---~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~---~~ 205 (413)
++..+ .... .. -.......+|.+++||..++.++|.++| ..|..-.. +.
T Consensus 236 ElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~Fl-gdFa~~i~f~gVH 314 (508)
T KOG1365|consen 236 ELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFL-GDFATDIRFQGVH 314 (508)
T ss_pred HHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHH-HHHhhhcccceeE
Confidence 11110 0000 00 0122335689999999999999999999 66654332 45
Q ss_pred EEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCC
Q 015091 206 VVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (413)
Q Consensus 206 ~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 253 (413)
++.+. .|+..|-|||+|.+.++|..|..+++++....|.|.|-.+..
T Consensus 315 mv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 315 MVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred EEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 55554 788999999999999999999999999888899998866543
No 112
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.25 E-value=4.8e-11 Score=110.05 Aligned_cols=76 Identities=26% Similarity=0.469 Sum_probs=66.0
Q ss_pred CceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeC----C--CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccC
Q 015091 282 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA----G--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355 (413)
Q Consensus 282 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~----~--~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 355 (413)
...|||.|||.+++.++|+++|..||.|+...|.. + .+||||+|.+.+++..||.+ +-..|++++|.|+..+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 34599999999999999999999999999887743 2 27999999999999999997 57779999999999776
Q ss_pred CCC
Q 015091 356 PSN 358 (413)
Q Consensus 356 ~~~ 358 (413)
...
T Consensus 367 ~~~ 369 (419)
T KOG0116|consen 367 GFR 369 (419)
T ss_pred ccc
Confidence 443
No 113
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=1.4e-11 Score=92.13 Aligned_cols=86 Identities=24% Similarity=0.359 Sum_probs=79.9
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
+.....|||.++...+++++|.+.| ..||+|+.+.+-.|+.||..+||++|+|.+.++|++|+..+|+..+.+..|.|.
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F-~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKF-ADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHH-hhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 3445689999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCc
Q 015091 250 PATNKKT 256 (413)
Q Consensus 250 ~~~~~~~ 256 (413)
|+-.+..
T Consensus 148 w~Fv~gp 154 (170)
T KOG0130|consen 148 WCFVKGP 154 (170)
T ss_pred EEEecCC
Confidence 9866544
No 114
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=8.2e-13 Score=127.13 Aligned_cols=236 Identities=16% Similarity=0.114 Sum_probs=177.9
Q ss_pred CcceeeecCCCCCCCHH-HHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeee
Q 015091 80 EIRTLWIGDLQYWMDET-YLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (413)
Q Consensus 80 ~~~~l~v~~lp~~~~~~-~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 158 (413)
..+...+.++.+...+. .++..|..+|.|..|++......-..--+.++.+....+++.|... .+.-+.++...+-+.
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~p-a~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVP-AGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccc-cccccCCccccCCCC
Confidence 34556677777776555 6788899999999999876332222223889999999999998853 555554444443333
Q ss_pred eccCCCCCCCC----CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHH
Q 015091 159 WASFGAGEKRD----DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234 (413)
Q Consensus 159 ~~~~~~~~~~~----~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~ 234 (413)
-+..+...... .....++|+.||+..+.+++|...| ..+|.+..+++.....+++.+|+||++|...+++.+|+.
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~-~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERF-SPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhc-CccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh
Confidence 22221111111 1334679999999999999999999 889988888777666688999999999999999999995
Q ss_pred hhCCccccCcceEeccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEe
Q 015091 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI 314 (413)
Q Consensus 235 ~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~ 314 (413)
......+ | ...|+|.|+|+..|.++|+.+|+.+|.+.++.+
T Consensus 728 f~d~~~~-g--------------------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~ 768 (881)
T KOG0128|consen 728 FRDSCFF-G--------------------------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRL 768 (881)
T ss_pred hhhhhhh-h--------------------------------------hhhhheeCCCCCCchHHHHhhccccCCccccch
Confidence 4433333 2 245999999999999999999999999998877
Q ss_pred eC-----CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCC
Q 015091 315 PA-----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 356 (413)
Q Consensus 315 ~~-----~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 356 (413)
.. .+|.|+|.|.+..++.+++...+...+.-+.+.|....+.
T Consensus 769 vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 769 VTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 53 3789999999999999999998888888888888776553
No 115
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.23 E-value=2.2e-10 Score=107.91 Aligned_cols=175 Identities=13% Similarity=0.065 Sum_probs=123.3
Q ss_pred ceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCC
Q 015091 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (413)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 253 (413)
+.+-+.+++++.++.+++++|- .-.+....+..+...+...|-++|+|....++.+|+ .-+...+-.|.+.+.....
T Consensus 312 ~y~~~~gm~fn~~~nd~rkfF~--g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~-~rn~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 312 YYNNYKGMEFNNDFNDGRKFFP--GRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAF-TRNPSDDVNRPFQTGPPGN 388 (944)
T ss_pred heeeecccccccccchhhhhcC--cccccccchhhhhcCCCcCCceEEEecCcchHHHHH-hcCchhhhhcceeecCCCc
Confidence 3455668899999999999993 224555666666655556889999999999999998 4566677778887766554
Q ss_pred CCccCCCcc-------CCCC----------cccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEE-EEee
Q 015091 254 KKTVSGQQQ-------YPKA----------SYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVH-VKIP 315 (413)
Q Consensus 254 ~~~~~~~~~-------~~~~----------~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~-v~~~ 315 (413)
..-...... .... ...........-.....+|||..||..+++.++.++|...-.|++ |.|.
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 322221110 0000 000100111123345689999999999999999999998777777 6663
Q ss_pred C---C--CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEE
Q 015091 316 A---G--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 351 (413)
Q Consensus 316 ~---~--~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 351 (413)
. + +..|||.|..++++.+|+..-+...++.|.|+|.
T Consensus 469 ~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred cCCcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 3 2 6789999999999999988777777889999884
No 116
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.23 E-value=2.1e-11 Score=113.09 Aligned_cols=80 Identities=29% Similarity=0.618 Sum_probs=73.8
Q ss_pred ceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeeecc
Q 015091 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (413)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~ 161 (413)
+.|||+|+|+++++++|.++|+..|.|.+++++.|+.+|+.+||||++|.+.++|..|++.|||..+.+ +.++++|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g--r~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG--RKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC--ceEEeeccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999955 566666665
Q ss_pred CC
Q 015091 162 FG 163 (413)
Q Consensus 162 ~~ 163 (413)
..
T Consensus 97 ~~ 98 (435)
T KOG0108|consen 97 NR 98 (435)
T ss_pred cc
Confidence 44
No 117
>smart00360 RRM RNA recognition motif.
Probab=99.21 E-value=7.7e-11 Score=82.40 Aligned_cols=71 Identities=34% Similarity=0.659 Sum_probs=66.1
Q ss_pred ecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 178 VGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 178 v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
|+||+..+++++|+++| +.||.|..+.+..+..++.++++|||+|.+.++|..|++.+++..+.++.++|+
T Consensus 1 i~~l~~~~~~~~l~~~f-~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELF-SKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHH-HhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999 899999999999888788999999999999999999999999999999988774
No 118
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.20 E-value=1e-10 Score=82.52 Aligned_cols=71 Identities=31% Similarity=0.579 Sum_probs=63.5
Q ss_pred eeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcc
Q 015091 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (413)
Q Consensus 83 ~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~ 154 (413)
+|+|+|||..+++++|+++|+.+|.|..+.+..+..+ ..+++|||+|.+.++|..|++.+++..+.+..+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~ 71 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLR 71 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 5899999999999999999999999999999988643 6789999999999999999999999887654443
No 119
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.20 E-value=7.9e-11 Score=112.38 Aligned_cols=81 Identities=25% Similarity=0.562 Sum_probs=76.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCCCC
Q 015091 280 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 359 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 359 (413)
.-++||||++|+..+++.||.++|+.||.|.+|.+...++||||++....+|.+|+.+|++..+.++.|+|.|+..+..+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999887655
Q ss_pred C
Q 015091 360 Q 360 (413)
Q Consensus 360 ~ 360 (413)
.
T Consensus 499 s 499 (894)
T KOG0132|consen 499 S 499 (894)
T ss_pred h
Confidence 4
No 120
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=7.4e-11 Score=102.54 Aligned_cols=82 Identities=30% Similarity=0.653 Sum_probs=73.7
Q ss_pred ccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHh-cCceeCCeeEEEEe
Q 015091 274 AQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRML-NGTQLGGQNIRLSW 352 (413)
Q Consensus 274 ~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~ 352 (413)
.....+....+|||++|...+++.+|+++|.+||+|+++.+...+++|||+|.+.++|+.|..++ +...|+|++|.|.|
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 34455667799999999999999999999999999999999999999999999999999988775 54558999999999
Q ss_pred ccC
Q 015091 353 GRS 355 (413)
Q Consensus 353 ~~~ 355 (413)
+++
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 988
No 121
>smart00361 RRM_1 RNA recognition motif.
Probab=99.17 E-value=9.4e-11 Score=81.62 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=51.9
Q ss_pred HHHHHHHhh----ccCceEEEE-EEecCCC--CCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCc
Q 015091 95 ETYLNTCFA----HTGEVVAVK-VIRNKQT--GQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (413)
Q Consensus 95 ~~~l~~~f~----~~G~v~~~~-~~~~~~~--g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~ 153 (413)
+++|+++|+ .||.|.+|. +..++.+ ++++|||||+|.+.++|.+|++.|||+.+.++.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l 67 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTV 67 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 577888888 999999996 7777666 8999999999999999999999999999977543
No 122
>smart00361 RRM_1 RNA recognition motif.
Probab=99.11 E-value=3.9e-10 Score=78.49 Aligned_cols=62 Identities=18% Similarity=0.423 Sum_probs=54.8
Q ss_pred HHHHHHHHhh----hCCCcceeE-EEEcCCC--CCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 187 DYMLQETFRA----RYPSTKGAK-VVIDRLT--GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 187 ~~~l~~~f~~----~~g~v~~~~-~~~~~~~--g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
+++|+++| + .||.|.++. ++.+..+ +.++||+||+|.+.++|.+|++.||+..+.|+.|++.
T Consensus 2 ~~~l~~~~-~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREF-SEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHH-HHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 46788888 6 999999996 7777666 8899999999999999999999999999999998763
No 123
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.02 E-value=4.2e-10 Score=99.91 Aligned_cols=177 Identities=19% Similarity=0.263 Sum_probs=139.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeee
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 158 (413)
...+++|++++-+.+.+.++..++..+|.+..+.+.....+..+++++.|.|+..+.+..|+.......+.+.....-+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 46789999999999999999999999998888888776677889999999999999999999753333333322222221
Q ss_pred eccC----CCCCCCCCCCCceEE-ecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHH
Q 015091 159 WASF----GAGEKRDDTPDHTIF-VGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233 (413)
Q Consensus 159 ~~~~----~~~~~~~~~~~~~l~-v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~ 233 (413)
.... ............++| +++|+.++++++|+++| ..+|.|..+++..+..++.+++|+|+.|.....+..++
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~-~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHF-VSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhc-cCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 1111 011112233444555 99999999999999999 89999999999999999999999999999999999999
Q ss_pred HhhCCccccCcceEeccCCCCCcc
Q 015091 234 TEMNGVFCSTRPMRIGPATNKKTV 257 (413)
Q Consensus 234 ~~l~~~~~~g~~i~v~~~~~~~~~ 257 (413)
.. ....+.++.+.+.+.......
T Consensus 245 ~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 245 ND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred hc-ccCcccCcccccccCCCCccc
Confidence 77 888999999999988776443
No 124
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.01 E-value=1.1e-09 Score=88.70 Aligned_cols=80 Identities=24% Similarity=0.313 Sum_probs=70.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhcc-CceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHT-GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~-G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
......++|..+|..+.+.+|..+|.++ |.|..+++.+++.||.|+|||||+|++++.|.-|.+.||+..+.++-+.+.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3455678999999999999999999988 788999998999999999999999999999999999999999877554444
Q ss_pred e
Q 015091 157 L 157 (413)
Q Consensus 157 ~ 157 (413)
+
T Consensus 126 v 126 (214)
T KOG4208|consen 126 V 126 (214)
T ss_pred E
Confidence 4
No 125
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=6.1e-10 Score=96.94 Aligned_cols=80 Identities=21% Similarity=0.386 Sum_probs=73.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
.++...|||..|.+-+|+++|.-+|+.||.|++|.|++|..||.+..||||+|++.++.++|.-.|++..|+.+.+.|-+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999766555443
No 126
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.98 E-value=1.2e-09 Score=72.39 Aligned_cols=56 Identities=25% Similarity=0.571 Sum_probs=49.6
Q ss_pred HHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccC
Q 015091 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (413)
Q Consensus 190 l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 251 (413)
|+++| +.||.|..+.+..+. +++|||+|.+.++|..|++.||+..+.|+.|+|.++
T Consensus 1 L~~~f-~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLF-SKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHH-TTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHh-CCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67889 899999999886543 689999999999999999999999999999999875
No 127
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=5.7e-10 Score=108.38 Aligned_cols=163 Identities=20% Similarity=0.358 Sum_probs=139.5
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
...+.+||++||...+++.+|+..| ..+|.|..|.|..-. -+.-.-|+||.|.+.+.+-.|..++.+..|....+++.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af-~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAF-DESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhh-hhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 3457899999999999999999999 899999999886653 23345689999999999999998888888877666666
Q ss_pred cCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHH
Q 015091 250 PATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRS 329 (413)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~ 329 (413)
+...+ ...++.+++++|...+....|...|..||.|..|++....-+++|.|++..
T Consensus 447 lG~~k------------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~ 502 (975)
T KOG0112|consen 447 LGQPK------------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPP 502 (975)
T ss_pred ccccc------------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCc
Confidence 55432 224577999999999999999999999999999999998899999999999
Q ss_pred HHHHHHHHhcCceeCC--eeEEEEeccCCCC
Q 015091 330 CAEEALRMLNGTQLGG--QNIRLSWGRSPSN 358 (413)
Q Consensus 330 ~a~~a~~~l~~~~~~g--~~l~v~~~~~~~~ 358 (413)
.|+.|+..|.|..|++ +.|+|.|+.....
T Consensus 503 ~aq~a~~~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 503 AAQAATHDMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred cchhhHHHHhcCcCCCCCcccccccccCCCC
Confidence 9999999999999976 6799999887544
No 128
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.96 E-value=2.1e-09 Score=95.54 Aligned_cols=174 Identities=21% Similarity=0.298 Sum_probs=134.4
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEecc
Q 015091 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (413)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 250 (413)
....++|++++.+++.+.++..++ ...|......+........+++++.+.|...+.+..|+.........+..+....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~-~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFS-SEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccc-hhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcc
Confidence 356789999999999999888888 7788777777777666788999999999999999999965554566666665554
Q ss_pred CCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEE
Q 015091 251 ATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQ 324 (413)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~ 324 (413)
.......... ..............+|++|++.+++++|+.+|..+|.|..++++.. ++++||+
T Consensus 165 ~~~~~~~~~n-----------~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~ 233 (285)
T KOG4210|consen 165 NTRRGLRPKN-----------KLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVD 233 (285)
T ss_pred cccccccccc-----------hhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhh
Confidence 4443321110 0011122223344459999999999999999999999999999654 6899999
Q ss_pred ecCHHHHHHHHHHhcCceeCCeeEEEEeccCCC
Q 015091 325 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 357 (413)
Q Consensus 325 f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 357 (413)
|.+...+..++.. ....+.++.+.+.+.....
T Consensus 234 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 234 FSAGNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred hhhchhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 9999999999997 8888999999999987643
No 129
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.4e-09 Score=94.81 Aligned_cols=86 Identities=24% Similarity=0.421 Sum_probs=80.6
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
..+.+.|||..|.+-+++++|.-+| +.||.|.+|.++++.+||.+-.||||+|.+.+++++|.-+|++..|+.+.|.|.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIF-SrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIF-SRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHH-hhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 4577899999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCc
Q 015091 250 PATNKKT 256 (413)
Q Consensus 250 ~~~~~~~ 256 (413)
++..-..
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 8866443
No 130
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.93 E-value=2.1e-09 Score=102.93 Aligned_cols=106 Identities=24% Similarity=0.381 Sum_probs=81.7
Q ss_pred cceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeeec
Q 015091 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (413)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~ 160 (413)
++||||+.|+..+++.||.++|+.||.|.+|.++..+ +||||.+.+..+|.+|+.+|+...+ ..+.|++.|+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv--~~k~Iki~Wa 492 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKV--ADKTIKIAWA 492 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccc--cceeeEEeee
Confidence 6899999999999999999999999999999998776 8999999999999999999997766 5677888887
Q ss_pred cCCCCCC-CCCCCCceEEecCCCCCCCHHHHHHHH
Q 015091 161 SFGAGEK-RDDTPDHTIFVGDLAADVTDYMLQETF 194 (413)
Q Consensus 161 ~~~~~~~-~~~~~~~~l~v~~lp~~~~~~~l~~~f 194 (413)
-...... -...-...+=|.-||++.-..++..++
T Consensus 493 ~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~ 527 (894)
T KOG0132|consen 493 VGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWC 527 (894)
T ss_pred ccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhh
Confidence 6443222 011111223445568865555566655
No 131
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=2.8e-09 Score=98.77 Aligned_cols=175 Identities=17% Similarity=0.157 Sum_probs=118.3
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEe
Q 015091 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 248 (413)
.+.+.++|+|-||+.++++++|+++| +.||+|..++... ..++.+||+|.|..+|++|+++|++..+.|+.+..
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f-~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIF-GAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHH-Hhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 35677899999999999999999999 9999999976543 44899999999999999999999999999999983
Q ss_pred ccCCCCCccCCCccCCCCcccCccccc----CCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEE
Q 015091 249 GPATNKKTVSGQQQYPKASYQNSQVAQ----SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQ 324 (413)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~ 324 (413)
............ ....+...... ....-....+++- |....+..-++..|..+|.+..-+...-...-|++
T Consensus 145 ~~~~~~~~~~~~----~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~~~~~~~~hq~~~~ 219 (549)
T KOG4660|consen 145 PGGARRAMGLQS----GTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPGRETPLLNHQRFVE 219 (549)
T ss_pred CCcccccchhcc----cchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCccccccccchhhhhhhh
Confidence 222222111110 01111100000 0000011223332 87777776677778888877763333334467889
Q ss_pred ecCHHHHHHHHHHhcCceeCCeeEEEEeccC
Q 015091 325 FADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355 (413)
Q Consensus 325 f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 355 (413)
|.+..++..+.... |..+.+....+.+..+
T Consensus 220 ~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 220 FADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hccccchhhcccCC-ceecCCCCceEEecCC
Confidence 98888886666644 6677777777777665
No 132
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=1.8e-10 Score=111.35 Aligned_cols=150 Identities=15% Similarity=0.238 Sum_probs=127.2
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeee
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 158 (413)
++..++||+||+..+.+.+|...|..+|.+..+++.-....++-+|+|||+|..++++.+|+...++..+ +
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-g-------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-G-------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-h--------
Confidence 4567889999999999999999999999888877775566789999999999999999999976555443 2
Q ss_pred eccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCC
Q 015091 159 WASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238 (413)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~ 238 (413)
...|+|.|.++..|.++++.++ +.+|.+.+++++..+ .|+.+|.+||.|.+..++.+++...+.
T Consensus 736 --------------K~~v~i~g~pf~gt~e~~k~l~-~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~ 799 (881)
T KOG0128|consen 736 --------------KISVAISGPPFQGTKEELKSLA-SKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDV 799 (881)
T ss_pred --------------hhhhheeCCCCCCchHHHHhhc-cccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchh
Confidence 2379999999999999999999 899999999876664 899999999999999999999987777
Q ss_pred ccccCcceEeccCCC
Q 015091 239 VFCSTRPMRIGPATN 253 (413)
Q Consensus 239 ~~~~g~~i~v~~~~~ 253 (413)
..+.-..+.|..++.
T Consensus 800 ~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 800 AGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhhcCccccccCC
Confidence 777666666666444
No 133
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=1.4e-09 Score=105.83 Aligned_cols=164 Identities=18% Similarity=0.294 Sum_probs=137.7
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcce
Q 015091 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (413)
Q Consensus 76 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~ 155 (413)
.....+++||++||...+++.+|+..|..+|.|.+|.|-+-+ -+...-|+||.|.+-..+-.|+..+.+..|....+.+
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 345678999999999999999999999999999999987654 3666789999999999999999999998887665555
Q ss_pred eeeeccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHh
Q 015091 156 RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (413)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~ 235 (413)
.+... ....++.+|+++|..++....|...| ..||.|..|.+-. ...|++|.|.+...+..|++.
T Consensus 446 glG~~--------kst~ttr~~sgglg~w~p~~~l~r~f-d~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 446 GLGQP--------KSTPTTRLQSGGLGPWSPVSRLNREF-DRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHD 510 (975)
T ss_pred ccccc--------ccccceeeccCCCCCCChHHHHHHHh-hccCcceeeeccc------CCcceeeecccCccchhhHHH
Confidence 54321 35667889999999999999999999 8999998876632 256999999999999999999
Q ss_pred hCCccccC--cceEeccCCCCC
Q 015091 236 MNGVFCST--RPMRIGPATNKK 255 (413)
Q Consensus 236 l~~~~~~g--~~i~v~~~~~~~ 255 (413)
+.+..|++ +.++|.++....
T Consensus 511 ~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 511 MRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred HhcCcCCCCCcccccccccCCC
Confidence 99999875 667787776543
No 134
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.85 E-value=5.3e-09 Score=96.66 Aligned_cols=77 Identities=26% Similarity=0.465 Sum_probs=70.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEec
Q 015091 280 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 353 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 353 (413)
.-++.|||.+|...+...||+.+|++||.|+-..+..+ ++|+||++.+.++|.+||..||..+|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34578999999999999999999999999988877654 789999999999999999999999999999999988
Q ss_pred cCC
Q 015091 354 RSP 356 (413)
Q Consensus 354 ~~~ 356 (413)
+..
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 753
No 135
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=1.2e-08 Score=88.92 Aligned_cols=82 Identities=22% Similarity=0.420 Sum_probs=67.9
Q ss_pred CCCCCCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCC-CcCCCC
Q 015091 73 QQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNG-TPMPNG 151 (413)
Q Consensus 73 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g-~~~~~~ 151 (413)
-.+..+....+|||++|-..+++.+|+++|.+||+|.++.+...+ ++|||+|.+.++|+.|..++-. ..|.
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~-- 291 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVIN-- 291 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeec--
Confidence 344567788999999999999999999999999999999999876 7999999999999999987544 3344
Q ss_pred CcceeeeeccC
Q 015091 152 EQNFRLNWASF 162 (413)
Q Consensus 152 ~~~~~~~~~~~ 162 (413)
+..+++.|...
T Consensus 292 G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 292 GFRLKIKWGRP 302 (377)
T ss_pred ceEEEEEeCCC
Confidence 45555557765
No 136
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.84 E-value=1.2e-08 Score=82.85 Aligned_cols=87 Identities=17% Similarity=0.255 Sum_probs=76.8
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceE
Q 015091 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (413)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 247 (413)
........+++..++....+.++..+|+..+|.|..+++-+++.||.++|||||+|.+.+.|+-|.+.||+-.|.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 33455668999999999999999999944448888888889999999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 015091 248 IGPATNK 254 (413)
Q Consensus 248 v~~~~~~ 254 (413)
|.+..+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9887664
No 137
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.82 E-value=7.3e-10 Score=90.19 Aligned_cols=138 Identities=25% Similarity=0.324 Sum_probs=109.4
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEecc
Q 015091 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (413)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 250 (413)
...++|||+|+...++++.|.++| -..|.|..+.|..++ .++.+ ||||+|.++.+...|++-+|+..+.++.+.+..
T Consensus 7 e~drtl~v~n~~~~v~eelL~Elf-iqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELF-IQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHh-hccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 446799999999999999999999 889999988876665 66667 999999999999999999999999888887654
Q ss_pred CCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeC-----CCcEEEEEe
Q 015091 251 ATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-----GKRCGFVQF 325 (413)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~-----~~~~afV~f 325 (413)
-..... .-|...++++.+...|+.-|.+..+++.+ ++.+.|+++
T Consensus 84 r~G~sh-------------------------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~ 132 (267)
T KOG4454|consen 84 RCGNSH-------------------------------APLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTY 132 (267)
T ss_pred ccCCCc-------------------------------chhhhhcchhhheeeecccCCCCCccccccccCCccCccchhh
Confidence 322110 01556778899999999999999888854 367889988
Q ss_pred cCHHHHHHHHHHhcCce
Q 015091 326 ADRSCAEEALRMLNGTQ 342 (413)
Q Consensus 326 ~~~~~a~~a~~~l~~~~ 342 (413)
.-..+.-.++....+..
T Consensus 133 qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 133 QRLCAVPFALDLYQGLE 149 (267)
T ss_pred hhhhcCcHHhhhhcccC
Confidence 77666666776655544
No 138
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.80 E-value=5.8e-09 Score=87.02 Aligned_cols=143 Identities=27% Similarity=0.406 Sum_probs=108.3
Q ss_pred HHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCCCCccCCCccCCCCcccCc
Q 015091 192 ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNS 271 (413)
Q Consensus 192 ~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 271 (413)
..| +.+-.+....++.+. .+..++++|+.|.....-.++-..-+++++.-+.+++..........
T Consensus 118 ~~f-~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPs------------- 182 (290)
T KOG0226|consen 118 VVF-SEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPS------------- 182 (290)
T ss_pred hhh-ccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCcc-------------
Confidence 344 444445555555554 56678899999999888888877777777877777776665544322
Q ss_pred ccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCe------EEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCC
Q 015091 272 QVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL------VHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGG 345 (413)
Q Consensus 272 ~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i------~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g 345 (413)
..+......+||++.|..+++++.|...|.+|-.. .+-+..+.+|++||.|.+..++..|++.|+|+.++.
T Consensus 183 ---l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgs 259 (290)
T KOG0226|consen 183 ---LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGS 259 (290)
T ss_pred ---cccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccccc
Confidence 23344556889999999999999999999998543 334445568999999999999999999999999999
Q ss_pred eeEEEEe
Q 015091 346 QNIRLSW 352 (413)
Q Consensus 346 ~~l~v~~ 352 (413)
|.|+++-
T Consensus 260 rpiklRk 266 (290)
T KOG0226|consen 260 RPIKLRK 266 (290)
T ss_pred chhHhhh
Confidence 9988764
No 139
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.67 E-value=6.1e-08 Score=89.77 Aligned_cols=83 Identities=23% Similarity=0.388 Sum_probs=76.7
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
....++|||.+|...+...+|+++| ++||.|+..+++.+..+--.+.|+||.+.+.++|.+||+.|+.+.+.|+.|.|.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlF-SKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLF-SKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred cccccceeeeccccchhhhHHHHHH-HHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 3446789999999999999999999 899999999999988888889999999999999999999999999999999998
Q ss_pred cCCC
Q 015091 250 PATN 253 (413)
Q Consensus 250 ~~~~ 253 (413)
.+..
T Consensus 481 kaKN 484 (940)
T KOG4661|consen 481 KAKN 484 (940)
T ss_pred eccc
Confidence 8754
No 140
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.65 E-value=7.8e-09 Score=92.24 Aligned_cols=152 Identities=20% Similarity=0.348 Sum_probs=122.2
Q ss_pred ceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCcc-ccCcceEeccCC
Q 015091 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-CSTRPMRIGPAT 252 (413)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~-~~g~~i~v~~~~ 252 (413)
+.+|++||...++.++|..+| ...-.-.+-.++. ..||+||...+...|.+|++.++++. +.|..+.+..+.
T Consensus 2 nklyignL~p~~~psdl~svf-g~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVF-GDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHh-ccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 468999999999999999988 3221111111221 26899999999999999999999855 889999999888
Q ss_pred CCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEee-CCCc--EEEEEecCHH
Q 015091 253 NKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP-AGKR--CGFVQFADRS 329 (413)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~-~~~~--~afV~f~~~~ 329 (413)
.++.. ++++-|.|++....|+.|..++..||.++.+... .+.. ..-|+|.+.+
T Consensus 75 ~kkqr------------------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~ 130 (584)
T KOG2193|consen 75 PKKQR------------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQ 130 (584)
T ss_pred hHHHH------------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHH
Confidence 77653 3568899999999999999999999999888763 2332 3357899999
Q ss_pred HHHHHHHHhcCceeCCeeEEEEeccCC
Q 015091 330 CAEEALRMLNGTQLGGQNIRLSWGRSP 356 (413)
Q Consensus 330 ~a~~a~~~l~~~~~~g~~l~v~~~~~~ 356 (413)
.+..|+..|+|..+.+..+++.|.-..
T Consensus 131 ~~~~ai~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 131 QHRQAIHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred HHHHHHHhhcchHhhhhhhhcccCchh
Confidence 999999999999999999999986543
No 141
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.63 E-value=1.1e-07 Score=81.26 Aligned_cols=79 Identities=23% Similarity=0.365 Sum_probs=70.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
..-..+|+|.||+..|+++||+++|..||.+..+.+..++ +|++.|.|-|.|...++|..|++.+++..++++.+.+.+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445789999999999999999999999999999999887 799999999999999999999999999888777655544
No 142
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.61 E-value=1.3e-07 Score=70.77 Aligned_cols=70 Identities=26% Similarity=0.485 Sum_probs=47.0
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCc-----eeCCeeEEEEe
Q 015091 283 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGT-----QLGGQNIRLSW 352 (413)
Q Consensus 283 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~-----~~~g~~l~v~~ 352 (413)
+.|+|.++...++.++|++.|+.||.|..|++.++...|||.|.+.+.|++|+..+... .|.+..+.++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 57899999999999999999999999999999999999999999999999999887544 46666665543
No 143
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.51 E-value=5.3e-07 Score=77.21 Aligned_cols=81 Identities=33% Similarity=0.484 Sum_probs=70.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEe
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~-----~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
.+....+|+|.||+..++++||+++|..||.++.+.+.- ..|+|-|.|...++|.+|++.+++..++|+.+++..
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 344558899999999999999999999999888888853 368999999999999999999999989999999988
Q ss_pred ccCCCC
Q 015091 353 GRSPSN 358 (413)
Q Consensus 353 ~~~~~~ 358 (413)
..++..
T Consensus 159 i~~~~~ 164 (243)
T KOG0533|consen 159 ISSPSQ 164 (243)
T ss_pred ecCccc
Confidence 766544
No 144
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.50 E-value=4.9e-07 Score=87.09 Aligned_cols=7 Identities=29% Similarity=0.282 Sum_probs=2.6
Q ss_pred HHHHHhh
Q 015091 230 LRAMTEM 236 (413)
Q Consensus 230 ~~a~~~l 236 (413)
..|++++
T Consensus 805 t~ACEE~ 811 (1102)
T KOG1924|consen 805 TAACEEL 811 (1102)
T ss_pred HHHHHHH
Confidence 3333333
No 145
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.49 E-value=3.3e-07 Score=87.32 Aligned_cols=81 Identities=38% Similarity=0.737 Sum_probs=73.7
Q ss_pred cCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEee---------CCCcEEEEEecCHHHHHHHHHHhcCceeCC
Q 015091 275 QSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP---------AGKRCGFVQFADRSCAEEALRMLNGTQLGG 345 (413)
Q Consensus 275 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~---------~~~~~afV~f~~~~~a~~a~~~l~~~~~~g 345 (413)
....++..+.|||+||+..++++.|...|..||.|..++|+ +++.|+||-|.+..+|.+|++.|+|..+.+
T Consensus 167 fDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 167 FDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 34456778999999999999999999999999999999995 346799999999999999999999999999
Q ss_pred eeEEEEeccC
Q 015091 346 QNIRLSWGRS 355 (413)
Q Consensus 346 ~~l~v~~~~~ 355 (413)
+.+++-|++.
T Consensus 247 ~e~K~gWgk~ 256 (877)
T KOG0151|consen 247 YEMKLGWGKA 256 (877)
T ss_pred eeeeeccccc
Confidence 9999999864
No 146
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.47 E-value=1.8e-06 Score=63.04 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=65.2
Q ss_pred ceeeecCCCCCCCHHHHHHHhhc--cCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCC--Ccceee
Q 015091 82 RTLWIGDLQYWMDETYLNTCFAH--TGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG--EQNFRL 157 (413)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~--~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~--~~~~~~ 157 (413)
+||+|+|||...|.++|.+++.. .|...=+-+..|-.++.+.|||||.|.+.+.|.+..+.++|..+... .+.+.+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999988754 35566677777888888999999999999999999999999988532 344455
Q ss_pred eecc
Q 015091 158 NWAS 161 (413)
Q Consensus 158 ~~~~ 161 (413)
.++.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5443
No 147
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.45 E-value=6.8e-07 Score=76.84 Aligned_cols=77 Identities=29% Similarity=0.541 Sum_probs=69.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEe
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
......+||+|+...++.+++..+|+.||.|..+.+..+ ++++||+|.+.+.+.+++. |++..|.++.++|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 345678999999999999999999999999988888644 7899999999999999999 999999999999999
Q ss_pred ccCC
Q 015091 353 GRSP 356 (413)
Q Consensus 353 ~~~~ 356 (413)
.+.+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 8765
No 148
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.42 E-value=2.4e-06 Score=62.32 Aligned_cols=80 Identities=20% Similarity=0.250 Sum_probs=65.0
Q ss_pred ceEEecCCCCCCCHHHHHHHHhhhC-CCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCcccc----CcceEe
Q 015091 174 HTIFVGDLAADVTDYMLQETFRARY-PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS----TRPMRI 248 (413)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~~~~-g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~----g~~i~v 248 (413)
+||.|+|||...+.++|.+++.+.+ |...-+-+..|-.++.+.|||||.|.+.+.+.+..+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 5899999999999999999885544 44555667778888999999999999999999999999997763 445556
Q ss_pred ccCCC
Q 015091 249 GPATN 253 (413)
Q Consensus 249 ~~~~~ 253 (413)
.+|.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 65543
No 149
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.41 E-value=4e-07 Score=78.27 Aligned_cols=80 Identities=21% Similarity=0.494 Sum_probs=71.5
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
..-+.+.+||+|+...+|.+++..+|+.||.|..+.+..++.++.+++|+||+|.+.+.+.+++. ||+..+.+....+.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 34567889999999999999999999999999999999999999999999999999999999998 99999977554444
Q ss_pred e
Q 015091 157 L 157 (413)
Q Consensus 157 ~ 157 (413)
.
T Consensus 176 ~ 176 (231)
T KOG4209|consen 176 L 176 (231)
T ss_pred e
Confidence 3
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.40 E-value=1.8e-06 Score=59.63 Aligned_cols=68 Identities=24% Similarity=0.438 Sum_probs=48.0
Q ss_pred ceEEEecCCCCCCHHH----HHHHHhcCC-CeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEecc
Q 015091 283 TTVFVGNLDSIVTDEH----LRELFSQYG-QLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354 (413)
Q Consensus 283 ~~l~v~nlp~~~~~~~----l~~~f~~~G-~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 354 (413)
..|+|.|||.+..... |+.++..+| .|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+-|++|.|+|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4689999999887655 456666775 677663 5799999999999999999999999999999999974
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.29 E-value=1.2e-06 Score=83.52 Aligned_cols=81 Identities=27% Similarity=0.569 Sum_probs=68.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCC---CCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcc
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQ---TGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~ 154 (413)
++..+.|||+||++.++++.|...|..||.|.+|+|+.-+. .-+.+.|+||.|-+..+|++|++.|+|..+.. ..
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~--~e 248 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME--YE 248 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee--ee
Confidence 45567899999999999999999999999999999988652 23456899999999999999999999999854 45
Q ss_pred eeeeec
Q 015091 155 FRLNWA 160 (413)
Q Consensus 155 ~~~~~~ 160 (413)
+++.|.
T Consensus 249 ~K~gWg 254 (877)
T KOG0151|consen 249 MKLGWG 254 (877)
T ss_pred eeeccc
Confidence 556665
No 152
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.26 E-value=4.8e-07 Score=80.29 Aligned_cols=204 Identities=16% Similarity=0.200 Sum_probs=122.8
Q ss_pred ceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecC---CCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeee
Q 015091 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNK---QTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (413)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~---~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 158 (413)
..|-|.||.+.+|.++++.+|...|.|.++.++... ........|||.|.+...+..|....|...| ++
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfv-dr------- 79 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFV-DR------- 79 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceee-ee-------
Confidence 478999999999999999999999999999997743 2234567899999999999888754443333 11
Q ss_pred eccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCC
Q 015091 159 WASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238 (413)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~ 238 (413)
.|+|--....+-.+. |||+.|.+..+...++ ..+|
T Consensus 80 ----------------aliv~p~~~~~~p~r----------------------------~af~~l~~~navprll-~pdg 114 (479)
T KOG4676|consen 80 ----------------ALIVRPYGDEVIPDR----------------------------FAFVELADQNAVPRLL-PPDG 114 (479)
T ss_pred ----------------eEEEEecCCCCCccH----------------------------HHHHhcCccccccccc-CCCC
Confidence 122221111111111 1222222222222222 2234
Q ss_pred ccccCcceEeccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeC--
Q 015091 239 VFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-- 316 (413)
Q Consensus 239 ~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~-- 316 (413)
..+....+...-......... ................++++|.+|...+-..++.+.|..+|.|....+..
T Consensus 115 ~Lp~~~~lt~~nh~p~ailkt-------P~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~ 187 (479)
T KOG4676|consen 115 VLPGDRPLTKINHSPNAILKT-------PELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKS 187 (479)
T ss_pred ccCCCCccccccCCccceecC-------CCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC
Confidence 344333332221111111111 00111111122223347899999999999999999999999998776643
Q ss_pred CCcEEEEEecCHHHHHHHHHHhcCceeCCe
Q 015091 317 GKRCGFVQFADRSCAEEALRMLNGTQLGGQ 346 (413)
Q Consensus 317 ~~~~afV~f~~~~~a~~a~~~l~~~~~~g~ 346 (413)
...+|.|+|........|+. ++|.++.-.
T Consensus 188 ~s~~c~~sf~~qts~~halr-~~gre~k~q 216 (479)
T KOG4676|consen 188 RSSSCSHSFRKQTSSKHALR-SHGRERKRQ 216 (479)
T ss_pred CCcchhhhHhhhhhHHHHHH-hcchhhhhh
Confidence 35678899988888888888 477776533
No 153
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.23 E-value=3.5e-06 Score=54.43 Aligned_cols=52 Identities=25% Similarity=0.477 Sum_probs=44.9
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHH
Q 015091 283 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEAL 335 (413)
Q Consensus 283 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~ 335 (413)
+.|-|.|.+.+.. ++|..+|..||.|.++.+.......||+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 4678889887766 456669999999999999988889999999999999985
No 154
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.21 E-value=2.9e-06 Score=78.84 Aligned_cols=76 Identities=22% Similarity=0.387 Sum_probs=64.1
Q ss_pred ceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccC
Q 015091 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (413)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 251 (413)
.+|||+|||.+++.++|.++| +.||.|+...|......++...||||+|.+.+++..||++ +-..++++.+.|+..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~F-k~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVF-KQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred cceEeecCCCCCCHHHHHHHH-hhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 459999999999999999999 9999999998877554455559999999999999999954 466778888877653
No 155
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.16 E-value=3.1e-07 Score=82.20 Aligned_cols=155 Identities=15% Similarity=0.288 Sum_probs=115.9
Q ss_pred ceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCc-CCCCCcceeeeec
Q 015091 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTP-MPNGEQNFRLNWA 160 (413)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~-~~~~~~~~~~~~~ 160 (413)
..+|++||.+.++.++|+.+|...-.-.+-.++... ||+||...+..-|.+|++.++|+. +.|+.+.+.....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~------gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS------GYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec------ceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 468999999999999999999775322222233322 899999999999999999988854 4444333333222
Q ss_pred cCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCcc
Q 015091 161 SFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (413)
Q Consensus 161 ~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~ 240 (413)
. ...++++-|.|++.....+-|..++ ..||.++.|..+.. ..-.-..-|.|.+.+.+..|+..+++..
T Consensus 76 k--------kqrsrk~Qirnippql~wevld~Ll-~qyg~ve~~eqvnt---~~etavvnvty~~~~~~~~ai~kl~g~Q 143 (584)
T KOG2193|consen 76 K--------KQRSRKIQIRNIPPQLQWEVLDSLL-AQYGTVENCEQVNT---DSETAVVNVTYSAQQQHRQAIHKLNGPQ 143 (584)
T ss_pred H--------HHHhhhhhHhcCCHHHHHHHHHHHH-hccCCHhHhhhhcc---chHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 1 3345669999999999999999999 89999999876432 1112223466888899999999999999
Q ss_pred ccCcceEeccCCCC
Q 015091 241 CSTRPMRIGPATNK 254 (413)
Q Consensus 241 ~~g~~i~v~~~~~~ 254 (413)
+.+..+++.|....
T Consensus 144 ~en~~~k~~YiPde 157 (584)
T KOG2193|consen 144 LENQHLKVGYIPDE 157 (584)
T ss_pred hhhhhhhcccCchh
Confidence 99999999887654
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.09 E-value=9.4e-06 Score=70.82 Aligned_cols=74 Identities=20% Similarity=0.484 Sum_probs=62.8
Q ss_pred CceEEEecCCCCCCHHHH------HHHHhcCCCeEEEEeeCCC-------c--EEEEEecCHHHHHHHHHHhcCceeCCe
Q 015091 282 NTTVFVGNLDSIVTDEHL------RELFSQYGQLVHVKIPAGK-------R--CGFVQFADRSCAEEALRMLNGTQLGGQ 346 (413)
Q Consensus 282 ~~~l~v~nlp~~~~~~~l------~~~f~~~G~i~~v~~~~~~-------~--~afV~f~~~~~a~~a~~~l~~~~~~g~ 346 (413)
.+-+||-+|+..+..|++ .++|.+||.|.+|.+.+.. + -.||+|.+.|+|.+||...+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 366899999998877763 4789999999999996542 1 249999999999999999999999999
Q ss_pred eEEEEeccC
Q 015091 347 NIRLSWGRS 355 (413)
Q Consensus 347 ~l~v~~~~~ 355 (413)
.|+..|...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999988654
No 157
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.00 E-value=3.6e-05 Score=53.36 Aligned_cols=74 Identities=14% Similarity=0.240 Sum_probs=46.9
Q ss_pred ceEEecCCCCCCCHHHHHHHHh---hhC-CCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 174 HTIFVGDLAADVTDYMLQETFR---ARY-PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~---~~~-g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
..|+|.|||.+.+...|+.-++ ..+ |.|..+ ..+.|+|.|.+.+.|.+|.+.|++..+.|+.|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 3689999999999887766552 234 444333 14689999999999999999999999999999999
Q ss_pred cCCCCCcc
Q 015091 250 PATNKKTV 257 (413)
Q Consensus 250 ~~~~~~~~ 257 (413)
+.......
T Consensus 73 ~~~~~r~~ 80 (90)
T PF11608_consen 73 FSPKNREF 80 (90)
T ss_dssp SS--S---
T ss_pred EcCCcccc
Confidence 98665443
No 158
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.92 E-value=5.6e-05 Score=55.65 Aligned_cols=71 Identities=23% Similarity=0.316 Sum_probs=53.9
Q ss_pred CceEEEecCCCCCCHHHHHHHHhcCCCeEEEE-------------eeCCCcEEEEEecCHHHHHHHHHHhcCceeCCe-e
Q 015091 282 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVK-------------IPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQ-N 347 (413)
Q Consensus 282 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~-------------~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~-~ 347 (413)
.+-|.|-|.|... ...|.++|++||.|.+.. +........|+|++..+|.+||.. ||..|+|. .
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 3568888998884 467889999999998875 566778999999999999999996 99999875 5
Q ss_pred EEEEecc
Q 015091 348 IRLSWGR 354 (413)
Q Consensus 348 l~v~~~~ 354 (413)
+-|.+++
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5577764
No 159
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.88 E-value=4.3e-05 Score=69.13 Aligned_cols=64 Identities=23% Similarity=0.431 Sum_probs=55.8
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-------------------CcEEEEEecCHHHHHHHHHH
Q 015091 277 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-------------------KRCGFVQFADRSCAEEALRM 337 (413)
Q Consensus 277 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-------------------~~~afV~f~~~~~a~~a~~~ 337 (413)
..+..+++|.+.|||.+-.-|.|.++|+.+|.|+.|+|.+. +-+|+|+|++.+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34457899999999999988999999999999999999432 45899999999999999998
Q ss_pred hcC
Q 015091 338 LNG 340 (413)
Q Consensus 338 l~~ 340 (413)
|+.
T Consensus 306 ~~~ 308 (484)
T KOG1855|consen 306 LNP 308 (484)
T ss_pred hch
Confidence 754
No 160
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.88 E-value=8.2e-05 Score=66.13 Aligned_cols=79 Identities=25% Similarity=0.394 Sum_probs=67.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEE--------EEee------CCCcEEEEEecCHHHHHHHHHHhcCceeC
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVH--------VKIP------AGKRCGFVQFADRSCAEEALRMLNGTQLG 344 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------v~~~------~~~~~afV~f~~~~~a~~a~~~l~~~~~~ 344 (413)
.....+|||-+|+..+++++|.++|.++|.|.. |.|- +.|+.|.|+|++...|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 455678999999999999999999999998853 2222 23789999999999999999999999999
Q ss_pred CeeEEEEeccCCC
Q 015091 345 GQNIRLSWGRSPS 357 (413)
Q Consensus 345 g~~l~v~~~~~~~ 357 (413)
+..|+|.++..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999987654
No 161
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.82 E-value=2.9e-05 Score=68.11 Aligned_cols=76 Identities=18% Similarity=0.389 Sum_probs=67.5
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCc--eEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCC
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGE--VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~--v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~ 152 (413)
.......+||+||-|.+|++||.+.+...|. +.++++..++.+|.+||||+|...+.++.++.++.|-.+.|.+..
T Consensus 76 ~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 76 SEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred ccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 4455567899999999999999999988875 889999999999999999999999999999999998888887654
No 162
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.80 E-value=3.5e-05 Score=68.42 Aligned_cols=81 Identities=16% Similarity=0.267 Sum_probs=70.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceE--------EEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCC
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVV--------AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~--------~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 149 (413)
.....+|||.+|+..+++++|.++|.+||.|. .|+|.++++|++.|+-|.|.|.+...|+.|+..++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 56678999999999999999999999999873 4778889999999999999999999999999999999997
Q ss_pred CCCcceeeeec
Q 015091 150 NGEQNFRLNWA 160 (413)
Q Consensus 150 ~~~~~~~~~~~ 160 (413)
+ ..+++..+
T Consensus 143 g--n~ikvs~a 151 (351)
T KOG1995|consen 143 G--NTIKVSLA 151 (351)
T ss_pred C--CCchhhhh
Confidence 7 34444333
No 163
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.63 E-value=0.00012 Score=54.88 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=39.1
Q ss_pred ceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 015091 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGT 146 (413)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~ 146 (413)
+.|.|.++...++.++|++.|+.||.|.-|.+.+.. ..|+|.|.+.++|++|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhc
Confidence 468899999999999999999999999888887654 48999999999999999875543
No 164
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.59 E-value=0.00014 Score=46.94 Aligned_cols=52 Identities=23% Similarity=0.340 Sum_probs=42.4
Q ss_pred ceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 015091 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140 (413)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~ 140 (413)
+.|-|.+.+.+..+ +|..+|..||+|+++.+-... .+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 56888888876654 466699999999998876333 59999999999999985
No 165
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.51 E-value=0.00029 Score=59.64 Aligned_cols=84 Identities=25% Similarity=0.360 Sum_probs=71.4
Q ss_pred HHHHHHHhhCCccccCcceEeccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCC
Q 015091 228 EQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYG 307 (413)
Q Consensus 228 ~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G 307 (413)
-|+.|..+|++....++.++|.++.. ..|+|.||...++.|.|...|+.||
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-----------------------------a~l~V~nl~~~~sndll~~~f~~fg 56 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-----------------------------AELYVVNLMQGASNDLLEQAFRRFG 56 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-----------------------------ceEEEEecchhhhhHHHHHhhhhcC
Confidence 46677778899999999999999876 3499999999999999999999999
Q ss_pred CeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcC
Q 015091 308 QLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNG 340 (413)
Q Consensus 308 ~i~~v~~~~~-----~~~afV~f~~~~~a~~a~~~l~~ 340 (413)
.|....+.-| .+.++|+|...-.|.+|+..+.-
T Consensus 57 ~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 57 PIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ccchheeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 9977655322 46789999999999999998743
No 166
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.48 E-value=0.00012 Score=64.35 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=65.0
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHhhhCC--CcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEe
Q 015091 171 TPDHTIFVGDLAADVTDYMLQETFRARYP--STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (413)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g--~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 248 (413)
....++|||||-|++|+++|.+.+ ...| .+.++++.-++.+|.+||||+|...+..+.++.++-|-.+.+.|..-.|
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~-~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKAL-QSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHH-HhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 344679999999999999999988 5555 3556677778889999999999999999999999888888888866655
Q ss_pred c
Q 015091 249 G 249 (413)
Q Consensus 249 ~ 249 (413)
.
T Consensus 157 ~ 157 (498)
T KOG4849|consen 157 L 157 (498)
T ss_pred e
Confidence 4
No 167
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.47 E-value=0.00031 Score=60.46 Aligned_cols=59 Identities=25% Similarity=0.331 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCCeEEEEeeCC-------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEecc
Q 015091 296 DEHLRELFSQYGQLVHVKIPAG-------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354 (413)
Q Consensus 296 ~~~l~~~f~~~G~i~~v~~~~~-------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 354 (413)
++++++.+++||.|..|.|... ---.||+|+..++|.+|+..|||+.|+||.++..|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4678889999999999988543 2357999999999999999999999999999887643
No 168
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.46 E-value=7.4e-05 Score=63.10 Aligned_cols=67 Identities=28% Similarity=0.560 Sum_probs=58.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCC------------------cEEEEEecCHHHHHHHHHHhcCce
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGK------------------RCGFVQFADRSCAEEALRMLNGTQ 342 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~------------------~~afV~f~~~~~a~~a~~~l~~~~ 342 (413)
..-.||+++||..+.-..|+++|+.||.|-.|.+.... ..++|+|.+-..|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 44689999999999999999999999999999984321 147899999999999999999999
Q ss_pred eCCee
Q 015091 343 LGGQN 347 (413)
Q Consensus 343 ~~g~~ 347 (413)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99975
No 169
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.43 E-value=0.00011 Score=62.13 Aligned_cols=73 Identities=25% Similarity=0.437 Sum_probs=61.8
Q ss_pred CcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCC--------CCcc----cEEEEEEcCHHHHHHHHHHhCCCc
Q 015091 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQT--------GQIE----GYGFIEFISRAGAERVLQTFNGTP 147 (413)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~--------g~~~----g~afV~f~~~~~A~~a~~~l~g~~ 147 (413)
-.-.||+++||+.++...|+++|+.||.|-.|-+.....+ |... .-++|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4467999999999999999999999999999998776544 2222 337899999999999999999999
Q ss_pred CCCCC
Q 015091 148 MPNGE 152 (413)
Q Consensus 148 ~~~~~ 152 (413)
|.+++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 97754
No 170
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.43 E-value=0.00067 Score=53.05 Aligned_cols=55 Identities=31% Similarity=0.542 Sum_probs=46.5
Q ss_pred HHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccC
Q 015091 298 HLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355 (413)
Q Consensus 298 ~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 355 (413)
+|.+.|+.||+|.-+++..+ ..+|+|.+-+.|.+|+. ++|.+++|+.|+|+...+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCC--eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 67788999999998888765 89999999999999999 699999999999998554
No 171
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.42 E-value=0.00023 Score=64.57 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=63.2
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEc---CCCCC----------CceeEEEEeCCHHHHHHHHH
Q 015091 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVID---RLTGR----------TKGYGFVRFGDESEQLRAMT 234 (413)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~---~~~g~----------~~g~afv~f~~~~~a~~a~~ 234 (413)
.++.++++|.+-|||.+-..+.|.++| ..+|.|..|+|..- +.+.+ .+-+|+|+|...+.|.+|.+
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiF-g~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIF-GTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHh-hcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 345688999999999999999999999 99999999999765 22221 25678999999999999998
Q ss_pred hhCCccccCcceEec
Q 015091 235 EMNGVFCSTRPMRIG 249 (413)
Q Consensus 235 ~l~~~~~~g~~i~v~ 249 (413)
.++...-+-..++|.
T Consensus 305 ~~~~e~~wr~glkvk 319 (484)
T KOG1855|consen 305 LLNPEQNWRMGLKVK 319 (484)
T ss_pred hhchhhhhhhcchhh
Confidence 776655444444443
No 172
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.41 E-value=0.00049 Score=58.34 Aligned_cols=93 Identities=17% Similarity=0.257 Sum_probs=75.9
Q ss_pred HHHHHHHHHhCCCcCCCCCcceeeeeccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCC
Q 015091 134 AGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTG 213 (413)
Q Consensus 134 ~~A~~a~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g 213 (413)
.-|..|...|+++...++.+.++.. . ...|||.||...++.+.+.+.| +.||.|+...++.|. .+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa--~-----------~a~l~V~nl~~~~sndll~~~f-~~fg~~e~av~~vD~-r~ 69 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFA--M-----------HAELYVVNLMQGASNDLLEQAF-RRFGPIERAVAKVDD-RG 69 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEee--c-----------cceEEEEecchhhhhHHHHHhh-hhcCccchheeeecc-cc
Confidence 4567777789999997766665553 2 1489999999999999999999 899999988887775 67
Q ss_pred CCceeEEEEeCCHHHHHHHHHhhCCccc
Q 015091 214 RTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (413)
Q Consensus 214 ~~~g~afv~f~~~~~a~~a~~~l~~~~~ 241 (413)
+..+-++|+|...-.|.+|+..+...-|
T Consensus 70 k~t~eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 70 KPTREGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred cccccchhhhhcchhHHHHHHHhccCcc
Confidence 7888999999999999999987754443
No 173
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.28 E-value=0.00036 Score=65.92 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=68.8
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHh-cCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCcee---CCeeEEEEec
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFS-QYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQL---GGQNIRLSWG 353 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~---~g~~l~v~~~ 353 (413)
....++.|+|.||-.-+|.-+|+.++. ..|.|+++.|.+=+..|||.|.+.++|.....+|||..+ +.+.|.+.|+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 455789999999999999999999998 566777776666678999999999999999999999986 6789999997
Q ss_pred cCCC
Q 015091 354 RSPS 357 (413)
Q Consensus 354 ~~~~ 357 (413)
....
T Consensus 520 ~~de 523 (718)
T KOG2416|consen 520 RADE 523 (718)
T ss_pred chhH
Confidence 7543
No 174
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.25 E-value=0.00059 Score=59.93 Aligned_cols=82 Identities=18% Similarity=0.318 Sum_probs=63.0
Q ss_pred CCceEEecCCCCCCCHHHH------HHHHhhhCCCcceeEEEEcCCC-CCCcee--EEEEeCCHHHHHHHHHhhCCcccc
Q 015091 172 PDHTIFVGDLAADVTDYML------QETFRARYPSTKGAKVVIDRLT-GRTKGY--GFVRFGDESEQLRAMTEMNGVFCS 242 (413)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l------~~~f~~~~g~v~~~~~~~~~~~-g~~~g~--afv~f~~~~~a~~a~~~l~~~~~~ 242 (413)
..+-+||-+|+..+..+++ .++| .+||.|..|.+-+.... ....+. .||.|.+.++|.+||.+.++..++
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyF-GQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYF-GQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhh-hhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3456899999998887762 3578 89999987766543211 111222 399999999999999999999999
Q ss_pred CcceEeccCCCC
Q 015091 243 TRPMRIGPATNK 254 (413)
Q Consensus 243 g~~i~v~~~~~~ 254 (413)
|+.|+..|...+
T Consensus 192 Gr~lkatYGTTK 203 (480)
T COG5175 192 GRVLKATYGTTK 203 (480)
T ss_pred CceEeeecCchH
Confidence 999999887664
No 175
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.23 E-value=0.00015 Score=61.40 Aligned_cols=57 Identities=23% Similarity=0.329 Sum_probs=48.5
Q ss_pred HHHHHHHh-cCCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEec
Q 015091 297 EHLRELFS-QYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 353 (413)
Q Consensus 297 ~~l~~~f~-~~G~i~~v~~~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 353 (413)
|||...|+ +||+|+.+.+-.+ +|-+||.|...++|++|+..||+..|.|+.|..++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 45555555 8999999977554 678999999999999999999999999999998773
No 176
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.12 E-value=0.003 Score=41.70 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=43.9
Q ss_pred CceEEEecCCCCCCHHHHHHHHhcC---CCeEEEEeeCCCcEEEEEecCHHHHHHHHHHh
Q 015091 282 NTTVFVGNLDSIVTDEHLRELFSQY---GQLVHVKIPAGKRCGFVQFADRSCAEEALRML 338 (413)
Q Consensus 282 ~~~l~v~nlp~~~~~~~l~~~f~~~---G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l 338 (413)
...|+|.|+ .+++.+||+.+|..| ....+|+...+ ..|-|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 357999998 568889999999998 13456666554 47889999999999999864
No 177
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=97.12 E-value=0.0013 Score=61.68 Aligned_cols=98 Identities=14% Similarity=0.259 Sum_probs=70.9
Q ss_pred CHHHHHHHHHhhCCccccCcceEeccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHh
Q 015091 225 DESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFS 304 (413)
Q Consensus 225 ~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~ 304 (413)
|.+-...++++.-+..++.+-.+|.... ..+.|.|+.|++.+.+|+|+.+|+
T Consensus 146 DvdLI~Evlresp~VqvDekgekVrp~~----------------------------kRcIvilREIpettp~e~Vk~lf~ 197 (684)
T KOG2591|consen 146 DVDLIVEVLRESPNVQVDEKGEKVRPNH----------------------------KRCIVILREIPETTPIEVVKALFK 197 (684)
T ss_pred chHHHHHHHhcCCCceeccCccccccCc----------------------------ceeEEEEeecCCCChHHHHHHHhc
Confidence 3455556666666666666555554432 237788999999999999999997
Q ss_pred c--CCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcC--ceeCCeeEEEE
Q 015091 305 Q--YGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNG--TQLGGQNIRLS 351 (413)
Q Consensus 305 ~--~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~--~~~~g~~l~v~ 351 (413)
. +-.+.++.+..+. -.||+|++..+|+.|.+.|.. ++|.|+.|..+
T Consensus 198 ~encPk~iscefa~N~-nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 198 GENCPKVISCEFAHND-NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred cCCCCCceeeeeeecC-ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 4 6678888876543 579999999999999988754 33777755443
No 178
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.0021 Score=60.58 Aligned_cols=74 Identities=19% Similarity=0.370 Sum_probs=59.9
Q ss_pred CCCcceeeecCCCCC--CC----HHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCC
Q 015091 78 PGEIRTLWIGDLQYW--MD----ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG 151 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~--~~----~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~ 151 (413)
+.....|+|.|+|-- .. ...|..+|+++|.++.+.+.-+.. |.++||.|++|.+..+|+.|++.|||+.++-+
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 356678999999842 11 234557799999999999887765 56999999999999999999999999988654
Q ss_pred C
Q 015091 152 E 152 (413)
Q Consensus 152 ~ 152 (413)
.
T Consensus 134 H 134 (698)
T KOG2314|consen 134 H 134 (698)
T ss_pred c
Confidence 3
No 179
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.96 E-value=0.00058 Score=62.86 Aligned_cols=76 Identities=21% Similarity=0.318 Sum_probs=64.8
Q ss_pred CCCCceEEEecCCCCC-CHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccC
Q 015091 279 DPNNTTVFVGNLDSIV-TDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~-~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 355 (413)
....+.|-+.-++..+ +.++|..+|.+||+|..|.+.-.--.|.|+|.+..+|-+|.. .++..|+||.|+|.|.++
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 3445566666667665 678999999999999999997776789999999999988888 489999999999999887
No 180
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.93 E-value=0.0022 Score=47.25 Aligned_cols=70 Identities=16% Similarity=0.124 Sum_probs=46.6
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEE-ecC------CCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCC
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVI-RNK------QTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN 150 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~-~~~------~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~ 150 (413)
...+.|.|-+.|.. ..+.|.++|++||.|.+..-. ++. .......+.-|.|.++.+|.+||.+ ||..+.+
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g 80 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSG 80 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETT
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcC
Confidence 34567899999988 455688999999999887500 000 0011236899999999999999964 8888755
No 181
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.85 E-value=0.004 Score=58.77 Aligned_cols=71 Identities=25% Similarity=0.410 Sum_probs=57.4
Q ss_pred CceEEEecCCCCCCH------HHHHHHHhcCCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCceeC-CeeEE
Q 015091 282 NTTVFVGNLDSIVTD------EHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLG-GQNIR 349 (413)
Q Consensus 282 ~~~l~v~nlp~~~~~------~~l~~~f~~~G~i~~v~~~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~-g~~l~ 349 (413)
..+|+|.|+|---.. ..|..+|+++|+|..+.++.+ +|+.|++|.+..+|..|++.|||+.|+ +++..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 467899999864322 345678999999999999743 789999999999999999999999974 66777
Q ss_pred EEe
Q 015091 350 LSW 352 (413)
Q Consensus 350 v~~ 352 (413)
|..
T Consensus 138 v~~ 140 (698)
T KOG2314|consen 138 VRL 140 (698)
T ss_pred eeh
Confidence 753
No 182
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.73 E-value=0.00095 Score=56.75 Aligned_cols=65 Identities=15% Similarity=0.252 Sum_probs=53.3
Q ss_pred HHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCC
Q 015091 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (413)
Q Consensus 188 ~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 253 (413)
++|...|..+||+|+.+++..+. ...-.|-+||.|..+++|++|++.||+..+.|++|...+..-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 56666775699999998765543 445688899999999999999999999999999998776543
No 183
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.52 E-value=0.049 Score=41.06 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=49.4
Q ss_pred ceeeecCCCCCCCHHHHHHHhhccC-ceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCC
Q 015091 82 RTLWIGDLQYWMDETYLNTCFAHTG-EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN 150 (413)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~ 150 (413)
..+.+...+..++.++|..+.+.+- .|..++|+++.. .++-.++++|.+.++|.+..+.+||+.+..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3344444555566677766666654 478889988753 355679999999999999999999998843
No 184
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.43 E-value=0.023 Score=43.95 Aligned_cols=76 Identities=24% Similarity=0.446 Sum_probs=59.3
Q ss_pred CCCCCCceEEEecCCCCC-CHHHHH---HHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEe
Q 015091 277 DDDPNNTTVFVGNLDSIV-TDEHLR---ELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 277 ~~~~~~~~l~v~nlp~~~-~~~~l~---~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
..++.-.+|.|+=|..++ ..|||+ ..++.||.|.+|.+ .++..|.|.|.|..+|-+|+.+++. ...|..+.++|
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-CGRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-cCCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 345566788888776665 334554 55789999999876 4678999999999999999999865 66788899998
Q ss_pred cc
Q 015091 353 GR 354 (413)
Q Consensus 353 ~~ 354 (413)
..
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 54
No 185
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.36 E-value=0.014 Score=48.51 Aligned_cols=61 Identities=30% Similarity=0.425 Sum_probs=49.4
Q ss_pred CHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhc--CceeCCeeEEEEeccC
Q 015091 295 TDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN--GTQLGGQNIRLSWGRS 355 (413)
Q Consensus 295 ~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~~~~ 355 (413)
..+.|+++|..|+.+..+...++-+-..|.|.+.++|.+|...|+ +..+.|..|+|-|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 457899999999999999999998899999999999999999999 8999999999999854
No 186
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.35 E-value=0.0097 Score=51.54 Aligned_cols=57 Identities=19% Similarity=0.164 Sum_probs=46.3
Q ss_pred HHHHHHHhhccCceEEEEEEecCCCCCcccE-EEEEEcCHHHHHHHHHHhCCCcCCCC
Q 015091 95 ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGY-GFIEFISRAGAERVLQTFNGTPMPNG 151 (413)
Q Consensus 95 ~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~-afV~f~~~~~A~~a~~~l~g~~~~~~ 151 (413)
++++.+.+++||.|..|.|......-..+-. -||+|...++|.+|+-.|||+.|.|+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr 357 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGR 357 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecce
Confidence 4566788999999999999887643333332 69999999999999999999999664
No 187
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.27 E-value=0.02 Score=49.88 Aligned_cols=73 Identities=26% Similarity=0.303 Sum_probs=57.0
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCee-EEEEeccCCC
Q 015091 283 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQN-IRLSWGRSPS 357 (413)
Q Consensus 283 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~-l~v~~~~~~~ 357 (413)
.=|-|-+++..-. .-|..+|++||.|.+.....+-.+.+|+|.+.-+|.+||.+ +|+.|+|.. |-|+-+.++.
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCHH
Confidence 3455667766533 46789999999999998887778999999999999999996 899998764 4555554443
No 188
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.25 E-value=0.0077 Score=54.31 Aligned_cols=69 Identities=19% Similarity=0.349 Sum_probs=57.2
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC---------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEe
Q 015091 283 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 283 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~---------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
..|-|.||...++.+++..+|...|.|..+.+... ...|||.|.|...+..|-. |.+..|=++.|.|--
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 37999999999999999999999999999888542 4689999999999888777 566676666666654
No 189
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.05 E-value=0.049 Score=38.12 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=40.9
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcC
Q 015091 283 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNG 340 (413)
Q Consensus 283 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~ 340 (413)
...+|+ +|..+...||.++|+.||.|.---| +...|||...+.+.|..|+..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi--~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI--NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEE--CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEE--cCCcEEEEeecHHHHHHHHHHhcc
Confidence 445555 9999999999999999998853333 345999999999999999998753
No 190
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=95.86 E-value=0.11 Score=48.78 Aligned_cols=29 Identities=10% Similarity=0.044 Sum_probs=17.3
Q ss_pred cceeeecCCCCCCCHHHHHHHhhccCceE
Q 015091 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVV 109 (413)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~G~v~ 109 (413)
-+.+-...|+..-..++|..-..+-|.+.
T Consensus 481 l~~ve~t~~~~~dgR~~LmaqIRqG~~Lk 509 (569)
T KOG3671|consen 481 LKKVETTALSSGDGRDALMAQIRQGGQLK 509 (569)
T ss_pred ccceeeccCcCcccHHHHHHHHHhccccc
Confidence 34566667775556677776666544433
No 191
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.82 E-value=0.0029 Score=56.17 Aligned_cols=73 Identities=21% Similarity=0.376 Sum_probs=59.8
Q ss_pred ceEEEecCCCCCCHHHHH---HHHhcCCCeEEEEeeCCC---------cEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 015091 283 TTVFVGNLDSIVTDEHLR---ELFSQYGQLVHVKIPAGK---------RCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 350 (413)
Q Consensus 283 ~~l~v~nlp~~~~~~~l~---~~f~~~G~i~~v~~~~~~---------~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 350 (413)
+.+||-+|+..+.++++. ++|.+||.|.+|.+.++. ..++|+|...++|..||...+|..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 567888898887655553 579999999999987643 25799999999999999999999999998887
Q ss_pred EeccC
Q 015091 351 SWGRS 355 (413)
Q Consensus 351 ~~~~~ 355 (413)
.++..
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 77554
No 192
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.81 E-value=0.0081 Score=57.13 Aligned_cols=78 Identities=12% Similarity=0.144 Sum_probs=61.1
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhh-ccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCC-CCcc
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFA-HTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN-GEQN 154 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~-~~~~ 154 (413)
....+..|+|.||-.-+|...|+.++. .+|.|++.+|-+- +..|||.|.+.++|.+.+..|+|..|.. +...
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 455678899999999999999999998 5667777754222 3689999999999999999999988853 3444
Q ss_pred eeeeec
Q 015091 155 FRLNWA 160 (413)
Q Consensus 155 ~~~~~~ 160 (413)
+.+++.
T Consensus 514 L~adf~ 519 (718)
T KOG2416|consen 514 LIADFV 519 (718)
T ss_pred eEeeec
Confidence 444443
No 193
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.69 E-value=0.027 Score=44.22 Aligned_cols=53 Identities=26% Similarity=0.381 Sum_probs=43.1
Q ss_pred HHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeee
Q 015091 97 YLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (413)
Q Consensus 97 ~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 158 (413)
+|.+.|+.||.|+-+++..+ .-+|.|.+-++|.+|+ .++|..+.++.+.+++.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LK 104 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLK 104 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE-
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeC
Confidence 56678899999998888764 4799999999999999 57999998877777764
No 194
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.28 E-value=0.11 Score=34.34 Aligned_cols=54 Identities=13% Similarity=0.192 Sum_probs=42.4
Q ss_pred ceeeecCCCCCCCHHHHHHHhhcc---CceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 015091 82 RTLWIGDLQYWMDETYLNTCFAHT---GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143 (413)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~---G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l 143 (413)
..|.|+++.. ++.++|+.+|..| .....|.-+-|. .|=|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4689999864 7778899999988 124566666664 6889999999999999754
No 195
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.21 E-value=0.039 Score=53.54 Aligned_cols=70 Identities=19% Similarity=0.394 Sum_probs=61.1
Q ss_pred CcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeee
Q 015091 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (413)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 158 (413)
...+|||+|+-..+..+-++.+...||.|.+++... |+|..|.....+..|+..++-..+.+.+...+++
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 467899999999999999999999999999887643 9999999999999999988888887777666664
No 196
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.12 E-value=0.11 Score=34.98 Aligned_cols=55 Identities=22% Similarity=0.277 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 015091 293 IVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 350 (413)
Q Consensus 293 ~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 350 (413)
.++-++|+..+..|+- .+ |..++.--||.|.+.++|+++....++..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4678999999999953 33 3345556689999999999999999999988887765
No 197
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.05 E-value=0.029 Score=46.46 Aligned_cols=72 Identities=13% Similarity=0.052 Sum_probs=46.0
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhc-cCce---EEEEEEecCCCCC--cccEEEEEEcCHHHHHHHHHHhCCCcCCC
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAH-TGEV---VAVKVIRNKQTGQ--IEGYGFIEFISRAGAERVLQTFNGTPMPN 150 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~-~G~v---~~~~~~~~~~~g~--~~g~afV~f~~~~~A~~a~~~l~g~~~~~ 150 (413)
.+...|.|++||+.+|++++.+.++. ++.. ..+.-......-+ .-.-|||.|.+.+++...++.++|..+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 45668999999999999999997776 6554 2333222222111 12459999999999999999999977643
No 198
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=94.89 E-value=0.056 Score=48.13 Aligned_cols=17 Identities=71% Similarity=0.995 Sum_probs=11.4
Q ss_pred CCCCCCCCCCCCCCCCC
Q 015091 397 GGYPGYGNYQQPQQPQQ 413 (413)
Q Consensus 397 gg~~g~g~y~~~~q~q~ 413 (413)
||.+|.|+|+|++|+||
T Consensus 376 gG~GGGggyqqp~~~~~ 392 (465)
T KOG3973|consen 376 GGRGGGGGYQQPQQQQQ 392 (465)
T ss_pred CCCCCCCCCcCchhhhh
Confidence 45566778887766654
No 199
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.81 E-value=0.56 Score=35.38 Aligned_cols=64 Identities=16% Similarity=0.276 Sum_probs=47.4
Q ss_pred CceEEEecCCCCCCHHHHHHHHhcC-CCeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCceeCC
Q 015091 282 NTTVFVGNLDSIVTDEHLRELFSQY-GQLVHVKIPAG----KRCGFVQFADRSCAEEALRMLNGTQLGG 345 (413)
Q Consensus 282 ~~~l~v~nlp~~~~~~~l~~~f~~~-G~i~~v~~~~~----~~~afV~f~~~~~a~~a~~~l~~~~~~g 345 (413)
+..+.+...+..++.++|..+.+.+ ..|..++|.++ +-.+.++|.+.++|..-...+||+.++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444455555566667776666655 46788888775 4478999999999999999999999754
No 200
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.76 E-value=0.17 Score=34.05 Aligned_cols=55 Identities=24% Similarity=0.423 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEe
Q 015091 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (413)
Q Consensus 184 ~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 248 (413)
.++-++++..| ..|+- .+|..+. .|| ||.|.+.++|++|....++..+.+..|.+
T Consensus 11 ~~~v~d~K~~L-r~y~~---~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRL-RKYRW---DRIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHH-hcCCc---ceEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46778899999 66652 3444443 455 99999999999999999998887766554
No 201
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.72 E-value=0.019 Score=56.98 Aligned_cols=73 Identities=23% Similarity=0.284 Sum_probs=63.5
Q ss_pred EEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCce--eCCeeEEEEeccCCCC
Q 015091 286 FVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQ--LGGQNIRLSWGRSPSN 358 (413)
Q Consensus 286 ~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~~~~~~~ 358 (413)
.+.|..-..+..-|..+|+.||.|.++...++-..|.|+|.+.+.|..|+.+|+|++ .-|-..+|.|++.-..
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 344555667778899999999999999999999999999999999999999999998 4678899999987544
No 202
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=94.40 E-value=0.076 Score=45.79 Aligned_cols=76 Identities=25% Similarity=0.535 Sum_probs=53.2
Q ss_pred CCceEEEecCCCC------------CCHHHHHHHHhcCCCeEEEEeeC---------C-------CcE---------EEE
Q 015091 281 NNTTVFVGNLDSI------------VTDEHLRELFSQYGQLVHVKIPA---------G-------KRC---------GFV 323 (413)
Q Consensus 281 ~~~~l~v~nlp~~------------~~~~~l~~~f~~~G~i~~v~~~~---------~-------~~~---------afV 323 (413)
...+|++.+||-. -+++.|+..|+.||.|..|+|+- + .+| |||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 4467888777632 36788999999999999999842 1 122 357
Q ss_pred EecCHHHHHHHHHHhcCcee----CCe----eEEEEeccCC
Q 015091 324 QFADRSCAEEALRMLNGTQL----GGQ----NIRLSWGRSP 356 (413)
Q Consensus 324 ~f~~~~~a~~a~~~l~~~~~----~g~----~l~v~~~~~~ 356 (413)
.|.....-..|+.+|.|..+ +++ .++|.|.+++
T Consensus 228 qfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 77777777788888877763 333 6777776654
No 203
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.32 E-value=0.22 Score=34.92 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=39.4
Q ss_pred eeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 015091 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNG 145 (413)
Q Consensus 84 l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g 145 (413)
||--..|..+...||.++|+.||.|. |.-+.| ..|||...+.+.|..++..++.
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEeCchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 44444999999999999999999863 333444 3799999999999999987754
No 204
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.28 E-value=0.16 Score=39.45 Aligned_cols=73 Identities=14% Similarity=0.178 Sum_probs=54.8
Q ss_pred CCCCceEEecCCCCCCC----HHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcc
Q 015091 170 DTPDHTIFVGDLAADVT----DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~----~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 245 (413)
+.+-.+|.|.-|..++. -..+...+ +.||.|.++... | +-.|.|.|.|..+|-.|+.+++. ...|..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~L-s~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRL-SVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHH-HhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 55667888887766553 34455667 799999999873 4 55799999999999999987776 556777
Q ss_pred eEeccC
Q 015091 246 MRIGPA 251 (413)
Q Consensus 246 i~v~~~ 251 (413)
+.+.|-
T Consensus 154 ~qCsWq 159 (166)
T PF15023_consen 154 FQCSWQ 159 (166)
T ss_pred EEeecc
Confidence 777664
No 205
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.18 E-value=0.15 Score=48.53 Aligned_cols=71 Identities=14% Similarity=0.211 Sum_probs=55.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhc--cCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHH-------hCCCcC
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAH--TGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT-------FNGTPM 148 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~--~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~-------l~g~~~ 148 (413)
....|.|+|+.|+..+..|+|+.+|+. |-.+++|.+-.+. -=||.|++..+|+.|.+. +.|+.|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 344567899999999999999999964 7789999998764 358999999999999865 445555
Q ss_pred CCCCcce
Q 015091 149 PNGEQNF 155 (413)
Q Consensus 149 ~~~~~~~ 155 (413)
..+-+.|
T Consensus 245 mARIKai 251 (684)
T KOG2591|consen 245 MARIKAI 251 (684)
T ss_pred hhhhhhh
Confidence 4443333
No 206
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.05 E-value=0.12 Score=42.87 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=49.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhc-CCCe---EEEEeeCC--------CcEEEEEecCHHHHHHHHHHhcCceeCC---
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQ-YGQL---VHVKIPAG--------KRCGFVQFADRSCAEEALRMLNGTQLGG--- 345 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i---~~v~~~~~--------~~~afV~f~~~~~a~~a~~~l~~~~~~g--- 345 (413)
...+|.|++||.++|++++.+.++. ++.. ..+.-..+ -..|||.|.+.+++......++|+.|-+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3468999999999999999987776 5554 33331111 2479999999999999999999988632
Q ss_pred --eeEEEEeccC
Q 015091 346 --QNIRLSWGRS 355 (413)
Q Consensus 346 --~~l~v~~~~~ 355 (413)
....|++|--
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3566777644
No 207
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.61 E-value=0.44 Score=33.12 Aligned_cols=59 Identities=20% Similarity=0.358 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHhcCCC-----eEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEec
Q 015091 292 SIVTDEHLRELFSQYGQ-----LVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 353 (413)
Q Consensus 292 ~~~~~~~l~~~f~~~G~-----i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 353 (413)
..++..+|..++...+. |-+|++... ++||+-.. +.|..++..|++..+.|+.|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 46788889988877643 556777654 88888754 4788899999999999999999864
No 208
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.39 E-value=2.4 Score=37.43 Aligned_cols=168 Identities=9% Similarity=0.119 Sum_probs=98.8
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcC-------CCCCCceeEEEEeCCHHHHHHHHH----hhCC
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDR-------LTGRTKGYGFVRFGDESEQLRAMT----EMNG 238 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~-------~~g~~~g~afv~f~~~~~a~~a~~----~l~~ 238 (413)
.-.++.|.+.|+..+++-..+.+.| -.||.|++|.++.+. ..........+.|-+.+.+..... .|..
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~f-v~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKF-VKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHh-hccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 3456789999999999998988888 799999999998765 112334567888999888776543 2332
Q ss_pred --ccccCcceEeccCCCCCccCCCccCCCCcc---c-CcccccCCCCCCCceEEEecCCCCCCHHHHH-H---HHhcCC-
Q 015091 239 --VFCSTRPMRIGPATNKKTVSGQQQYPKASY---Q-NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLR-E---LFSQYG- 307 (413)
Q Consensus 239 --~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~-~---~f~~~G- 307 (413)
..+.-..+.+.+..-+............+. . ......-.....++.|.|. +...+.++++. + |+..-+
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n 169 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNN 169 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCC
Confidence 224556666655543222111100000000 0 0001111222345666664 33444344432 2 222223
Q ss_pred ---CeEEEEeeC--------CCcEEEEEecCHHHHHHHHHHhc
Q 015091 308 ---QLVHVKIPA--------GKRCGFVQFADRSCAEEALRMLN 339 (413)
Q Consensus 308 ---~i~~v~~~~--------~~~~afV~f~~~~~a~~a~~~l~ 339 (413)
.|++|++.. .+.||.++|-+..-|...+.-|.
T Consensus 170 ~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 170 KRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred ceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 467777743 26799999999999988887765
No 209
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.03 E-value=0.068 Score=53.31 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=63.0
Q ss_pred eeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeeecc
Q 015091 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (413)
Q Consensus 83 ~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~ 161 (413)
+.++.|.+-..+-..|..+|++||.|.+.+..++- ..|.|+|.+.+.|..|++.|.|+.+...+...++.+++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 44566777788889999999999999999998876 58999999999999999999999987777777777664
No 210
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.97 E-value=0.34 Score=45.07 Aligned_cols=68 Identities=19% Similarity=0.253 Sum_probs=58.1
Q ss_pred cceeeecCCCCCCCHHHHHHHhhccC-ceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCC
Q 015091 81 IRTLWIGDLQYWMDETYLNTCFAHTG-EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN 150 (413)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~ 150 (413)
++.|.|-.+|..+|-.||..|+..+- .|.++++++|.. ..+-.++|+|.+.++|....+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78899999999999999999987554 589999999653 334568999999999999999999998743
No 211
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=92.83 E-value=0.19 Score=50.99 Aligned_cols=10 Identities=40% Similarity=0.650 Sum_probs=3.8
Q ss_pred EEEEEEcCHH
Q 015091 125 YGFIEFISRA 134 (413)
Q Consensus 125 ~afV~f~~~~ 134 (413)
|+-+-|.+.+
T Consensus 472 yg~i~fctvg 481 (1282)
T KOG0921|consen 472 YGSIMFCTVG 481 (1282)
T ss_pred ccceeeeccc
Confidence 3333333333
No 212
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.75 E-value=0.3 Score=42.91 Aligned_cols=62 Identities=21% Similarity=0.170 Sum_probs=47.5
Q ss_pred cceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCC
Q 015091 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN 150 (413)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~ 150 (413)
...|-|-+.++.-. ..|..+|++||.|++...-. .-.+-.|.|.+.-+|.+||.. ||+.|.+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALsk-ng~ii~g 258 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALSK-NGTIIDG 258 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhhh-cCeeecc
Confidence 44567777776543 45788999999998876442 235899999999999999965 8877755
No 213
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=92.66 E-value=0.89 Score=46.08 Aligned_cols=61 Identities=15% Similarity=0.235 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHhcCCCeE-----EEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEecc
Q 015091 291 DSIVTDEHLRELFSQYGQLV-----HVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354 (413)
Q Consensus 291 p~~~~~~~l~~~f~~~G~i~-----~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 354 (413)
...++..+|..++..-+.|. +|+|.. .+.||+.. .+.|...+..|++..+.|+.|.|+.++
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLFA--SHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--CceEEEcC-hhhHHHHHHHhccccccCCceEEEECC
Confidence 34678888888887665554 444443 48888875 455788899999999999999999875
No 214
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.46 E-value=0.87 Score=42.47 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=59.6
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccC
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 243 (413)
...++.|.|-.+|..++-.||..|+....-.|.+++++++... ++=...|.|.+.++|....+++||..|..
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3348899999999999999999999655667899999986432 34457899999999999999999988743
No 215
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=92.46 E-value=0.57 Score=42.99 Aligned_cols=9 Identities=22% Similarity=0.106 Sum_probs=5.8
Q ss_pred CHHHHHHHH
Q 015091 186 TDYMLQETF 194 (413)
Q Consensus 186 ~~~~l~~~f 194 (413)
|.+|.++.|
T Consensus 471 tkDDaY~~F 479 (487)
T KOG4672|consen 471 TKDDAYNAF 479 (487)
T ss_pred cchHHHHHH
Confidence 666666666
No 216
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.88 E-value=0.26 Score=48.10 Aligned_cols=70 Identities=26% Similarity=0.401 Sum_probs=62.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEe
Q 015091 280 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
+...++||+|+...++.+-++.....+|.|.++.... |+|..|..+..+.+|+..|+...++|..+.+.-
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4567899999999999999999999999988776654 999999999999999999999999998877755
No 217
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.87 E-value=0.16 Score=36.40 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=46.4
Q ss_pred EEEEeCCHHHHHHHHHhhCC--ccccCcceEeccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCH
Q 015091 219 GFVRFGDESEQLRAMTEMNG--VFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTD 296 (413)
Q Consensus 219 afv~f~~~~~a~~a~~~l~~--~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~ 296 (413)
|.|.|.+..-|...++ +.. ..+++..+.|....-...... ...-......++|.|.|||..+.+
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~-------------k~qv~~~vs~rtVlvsgip~~l~e 66 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQ-------------KFQVFSGVSKRTVLVSGIPDVLDE 66 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCce-------------EEEEEEcccCCEEEEeCCCCCCCh
Confidence 5799999999999884 333 335566665544322211110 111223346689999999999999
Q ss_pred HHHHHHHh
Q 015091 297 EHLRELFS 304 (413)
Q Consensus 297 ~~l~~~f~ 304 (413)
|+|++.++
T Consensus 67 e~l~D~Le 74 (88)
T PF07292_consen 67 EELRDKLE 74 (88)
T ss_pred hhheeeEE
Confidence 99998764
No 218
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.81 E-value=0.13 Score=47.97 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=59.5
Q ss_pred CCCcceeeecCCCCCC-CHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 78 PGEIRTLWIGDLQYWM-DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~-~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
..+.+.|-+.-.+... |.++|..+|.+||.|..|.+-... -.|.|+|.+..+|.+|. ...+..| +++.++
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~-~s~~avl--nnr~iK 439 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAY-ASHGAVL--NNRFIK 439 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchh-cccccee--cCceeE
Confidence 3456667777777765 568999999999999999986653 47999999999998777 3467777 446677
Q ss_pred eeeccCCC
Q 015091 157 LNWASFGA 164 (413)
Q Consensus 157 ~~~~~~~~ 164 (413)
+.|.+.+.
T Consensus 440 l~whnps~ 447 (526)
T KOG2135|consen 440 LFWHNPSP 447 (526)
T ss_pred EEEecCCc
Confidence 77776543
No 219
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.24 E-value=0.13 Score=45.96 Aligned_cols=82 Identities=17% Similarity=0.284 Sum_probs=61.1
Q ss_pred CceEEecCCCCCCCHHHHHH---HHhhhCCCcceeEEEEcCC--CCC-CceeEEEEeCCHHHHHHHHHhhCCccccCcce
Q 015091 173 DHTIFVGDLAADVTDYMLQE---TFRARYPSTKGAKVVIDRL--TGR-TKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (413)
Q Consensus 173 ~~~l~v~~lp~~~~~~~l~~---~f~~~~g~v~~~~~~~~~~--~g~-~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 246 (413)
.+-+||-+|+.....+++.+ .| .+||.|..|.+..+.. .+. ..-.++|.|...++|..||...++...+|+.+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyf-gqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYF-GQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccc-cccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 34678889988877766654 66 6778888887766542 111 12237999999999999999999999999998
Q ss_pred EeccCCCCC
Q 015091 247 RIGPATNKK 255 (413)
Q Consensus 247 ~v~~~~~~~ 255 (413)
+..+...+-
T Consensus 156 ka~~gttky 164 (327)
T KOG2068|consen 156 KASLGTTKY 164 (327)
T ss_pred HHhhCCCcc
Confidence 887776653
No 220
>PHA03247 large tegument protein UL36; Provisional
Probab=91.01 E-value=1.3 Score=50.34 Aligned_cols=7 Identities=14% Similarity=0.653 Sum_probs=2.8
Q ss_pred cCCCCCC
Q 015091 87 GDLQYWM 93 (413)
Q Consensus 87 ~~lp~~~ 93 (413)
..+.++.
T Consensus 3002 ~~~~~w~ 3008 (3151)
T PHA03247 3002 SRVSSWA 3008 (3151)
T ss_pred CCcchhh
Confidence 3344433
No 221
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=90.73 E-value=0.29 Score=35.04 Aligned_cols=68 Identities=18% Similarity=0.330 Sum_probs=43.7
Q ss_pred EEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeeecc--CCCCC---CCCCCCCceEEecCCCCCCCHHHHHHHH
Q 015091 126 GFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS--FGAGE---KRDDTPDHTIFVGDLAADVTDYMLQETF 194 (413)
Q Consensus 126 afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~l~v~~lp~~~~~~~l~~~f 194 (413)
|+|.|.+..-|++.++. ....+.-....+++.... ..... -......++|.+.|||...++++|++.+
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 68999999999999964 222232223333332221 11111 1235667899999999999999998877
No 222
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=88.41 E-value=0.5 Score=38.38 Aligned_cols=73 Identities=18% Similarity=0.300 Sum_probs=56.2
Q ss_pred ceEEEecCCCCCC-----HHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCe-eEEEEeccC
Q 015091 283 TTVFVGNLDSIVT-----DEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQ-NIRLSWGRS 355 (413)
Q Consensus 283 ~~l~v~nlp~~~~-----~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~-~l~v~~~~~ 355 (413)
..+.+.+|...+. ......+|.+|-+..-..+.++.+..-|.|.+.+.|..|...++...|.|. .++.-|+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 4566777766542 233456677777776677778888888999999999999999999999998 888888765
No 223
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.60 E-value=3.3 Score=40.09 Aligned_cols=74 Identities=20% Similarity=0.320 Sum_probs=59.8
Q ss_pred CCCCceEEEecCCCC-CCHHHHHHHHhcC----CCeEEEEeeC-----------------------------C-------
Q 015091 279 DPNNTTVFVGNLDSI-VTDEHLRELFSQY----GQLVHVKIPA-----------------------------G------- 317 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~-~~~~~l~~~f~~~----G~i~~v~~~~-----------------------------~------- 317 (413)
...+++|-|.|+.++ +..+||.-+|..| |.|.+|.|-. +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456788999999985 7899999999887 6899999811 0
Q ss_pred --------C---------cEEEEEecCHHHHHHHHHHhcCceeCCe--eEEEEe
Q 015091 318 --------K---------RCGFVQFADRSCAEEALRMLNGTQLGGQ--NIRLSW 352 (413)
Q Consensus 318 --------~---------~~afV~f~~~~~a~~a~~~l~~~~~~g~--~l~v~~ 352 (413)
| -||.|+|.+.+.|......++|.+|... .|.++|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 0 1789999999999999999999998654 555555
No 224
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=86.92 E-value=1 Score=37.49 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=41.1
Q ss_pred CHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhC--CCcCCCCC
Q 015091 94 DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN--GTPMPNGE 152 (413)
Q Consensus 94 ~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~--g~~~~~~~ 152 (413)
..+.|+++|..++.+.++...+.= +=..|.|.+.++|.+|...|+ +..+.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~ 62 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKR 62 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCc
Confidence 357899999999999999888754 458999999999999999998 77775544
No 225
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.60 E-value=4.9 Score=38.97 Aligned_cols=83 Identities=18% Similarity=0.266 Sum_probs=64.4
Q ss_pred CCCcceeeecCCCCC-CCHHHHHHHhhcc----CceEEEEEEecCC----------CCC---------------------
Q 015091 78 PGEIRTLWIGDLQYW-MDETYLNTCFAHT----GEVVAVKVIRNKQ----------TGQ--------------------- 121 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~-~~~~~l~~~f~~~----G~v~~~~~~~~~~----------~g~--------------------- 121 (413)
...+++|-|-|+.|+ +...+|.-+|+.| |.|.+|.|....- +|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 567889999999987 7889999998776 4799998865421 121
Q ss_pred ----------------cccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeeec
Q 015091 122 ----------------IEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (413)
Q Consensus 122 ----------------~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~ 160 (413)
---||.|+|.+.+.|.+..+.++|..+......+-+.+-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 114799999999999999999999999776665555544
No 226
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=85.61 E-value=2 Score=37.89 Aligned_cols=79 Identities=16% Similarity=0.312 Sum_probs=61.7
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCC-------------cEEEEEecCHHHHHHH----HHHhc
Q 015091 277 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGK-------------RCGFVQFADRSCAEEA----LRMLN 339 (413)
Q Consensus 277 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~-------------~~afV~f~~~~~a~~a----~~~l~ 339 (413)
.+.-.++.|...|+..+++-..+.+.|.+||.|++|.+..+. ....+-|-+.+.+... ++.|.
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 344566889999999999989999999999999999997654 6789999999887754 34444
Q ss_pred C--ceeCCeeEEEEeccC
Q 015091 340 G--TQLGGQNIRLSWGRS 355 (413)
Q Consensus 340 ~--~~~~g~~l~v~~~~~ 355 (413)
. ..+....|.|.|..-
T Consensus 90 EfK~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVSL 107 (309)
T ss_pred HHHHhcCCcceeEEEEEE
Confidence 3 337788888888653
No 227
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=84.76 E-value=6.6 Score=34.43 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=40.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHhcCCCe-EEEEeeCCCcEEEEEecCHH
Q 015091 280 PNNTTVFVGNLDSIVTDEHLRELFSQYGQL-VHVKIPAGKRCGFVQFADRS 329 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i-~~v~~~~~~~~afV~f~~~~ 329 (413)
.....|+++||+.++.-.||+..+.+-+-+ .++...-.++.||+.|-+..
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCcc
Confidence 345679999999999999999999877643 66666667889999997653
No 228
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=83.81 E-value=3.4 Score=41.48 Aligned_cols=6 Identities=33% Similarity=0.517 Sum_probs=2.8
Q ss_pred hhccCc
Q 015091 102 FAHTGE 107 (413)
Q Consensus 102 f~~~G~ 107 (413)
|+.+++
T Consensus 403 ~~~~ee 408 (830)
T KOG1923|consen 403 FSRFEE 408 (830)
T ss_pred HHHHHH
Confidence 444444
No 229
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=83.38 E-value=2.3 Score=34.19 Aligned_cols=112 Identities=13% Similarity=0.036 Sum_probs=75.3
Q ss_pred CCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCCCCccCCCccC
Q 015091 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQY 263 (413)
Q Consensus 184 ~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~ 263 (413)
..+-..|.+.+...++....+.+..- ..++..+.|.+.+++.++++ .....+.+..+.+....+......
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~---- 97 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSE---- 97 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccc----
Confidence 45677777777555555445555432 25788999999999999984 455667777777777664322111
Q ss_pred CCCcccCcccccCCCCCCCceEEEecCCCC-CCHHHHHHHHhcCCCeEEEEeeCC
Q 015091 264 PKASYQNSQVAQSDDDPNNTTVFVGNLDSI-VTDEHLRELFSQYGQLVHVKIPAG 317 (413)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~G~i~~v~~~~~ 317 (413)
........=|.|.|||.. .+++-|+.+.+.+|.+.+++....
T Consensus 98 ------------~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 98 ------------VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred ------------cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 001111233667899987 588889999999999999988643
No 230
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=80.92 E-value=8.4 Score=26.64 Aligned_cols=58 Identities=14% Similarity=0.264 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHhhccCc-----eEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 91 YWMDETYLNTCFAHTGE-----VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 91 ~~~~~~~l~~~f~~~G~-----v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
..++..+|..++...+. |-.|.+.. .|+||+.... .|..+++.|++..+.++.+.++.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 45778888888876543 66777754 3889988654 78889999999999877666653
No 231
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=78.61 E-value=2 Score=45.08 Aligned_cols=38 Identities=16% Similarity=0.104 Sum_probs=26.1
Q ss_pred CcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecC
Q 015091 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNK 117 (413)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~ 117 (413)
..++++|--+-..+..++|+.+.+.++...++....|+
T Consensus 71 kak~~~v~t~ka~~PpeHLrki~~~~sdm~s~~~~~Dk 108 (2365)
T COG5178 71 KAKTLHVLTLKAPIPPEHLRKIQSPCSDMPSVLTKVDK 108 (2365)
T ss_pred hhhheeeeccCCCCCHHHHHhhhCccccchhhhhhhhh
Confidence 45567777777777788888888877766555554444
No 232
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.85 E-value=4.2 Score=36.21 Aligned_cols=12 Identities=42% Similarity=0.908 Sum_probs=5.0
Q ss_pred CCCCCCCCCCCC
Q 015091 396 YGGYPGYGNYQQ 407 (413)
Q Consensus 396 ~gg~~g~g~y~~ 407 (413)
+|||.-.+.|+.
T Consensus 90 GgGyN~~~~~g~ 101 (362)
T KOG3875|consen 90 GGGYNRFGPYGT 101 (362)
T ss_pred Cccccccccccc
Confidence 334443344443
No 233
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=73.11 E-value=19 Score=31.70 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=34.7
Q ss_pred CCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHH
Q 015091 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227 (413)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~ 227 (413)
....|+++||+.++.-.+|+..++ ..+- .-..+.. ..+.|-||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr-~~~~-~pm~isw----kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELR-KREC-TPMSISW----KGHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHH-hcCC-CceeEee----ecCCcceeEecCCcc
Confidence 345699999999999999999994 3332 2223322 224778999997653
No 234
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=72.39 E-value=27 Score=32.76 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=16.4
Q ss_pred HHHHHHHHhhCCccccCcceEeccCCCCC
Q 015091 227 SEQLRAMTEMNGVFCSTRPMRIGPATNKK 255 (413)
Q Consensus 227 ~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 255 (413)
++|+......+...+.-+.|-|+++....
T Consensus 478 qeakr~~v~ndvatiLsRRiaveysdseD 506 (518)
T KOG1830|consen 478 QEAKREAVENDVATILSRRIAVEYSDSED 506 (518)
T ss_pred HHHhhccccchHHHHHHHHHHHHhccCcc
Confidence 34444433455555666777777765543
No 235
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=70.65 E-value=6.7 Score=29.96 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=27.3
Q ss_pred CCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcC-HHHHHHHH
Q 015091 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFIS-RAGAERVL 140 (413)
Q Consensus 93 ~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~-~~~A~~a~ 140 (413)
.+.++|++.|+.|..+ +++.+.++ .-..|+++|+|.+ -..-..|+
T Consensus 29 ~~~~~l~~~l~~f~p~-kv~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPL-KVKPLYGK--QGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp --SHHHHHHHHH---S-EEEEEEET--TEEEEEEEEE--SSHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCc-eeEECcCC--CCCcEEEEEEECCChHHHHHHH
Confidence 3568899999999876 46666765 3567999999985 44445554
No 236
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=68.29 E-value=12 Score=33.93 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=10.4
Q ss_pred eEEecCCCCCCCHHHHHHHH
Q 015091 175 TIFVGDLAADVTDYMLQETF 194 (413)
Q Consensus 175 ~l~v~~lp~~~~~~~l~~~f 194 (413)
+|-+...|.++++-.|.+-+
T Consensus 151 ~L~~~k~p~Nin~~~lfe~i 170 (465)
T KOG3973|consen 151 TLNFPKQPGNINEWKLFETI 170 (465)
T ss_pred HcCCCCCCCCchHHHHHHHH
Confidence 34444555566665554444
No 237
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=67.56 E-value=19 Score=31.56 Aligned_cols=92 Identities=15% Similarity=0.287 Sum_probs=53.7
Q ss_pred eEEEEEEecCCCCCcccEEEEEEc----CHHHHHHHHHHhCCCcCCCCCc---------------ceeeeeccCC-----
Q 015091 108 VVAVKVIRNKQTGQIEGYGFIEFI----SRAGAERVLQTFNGTPMPNGEQ---------------NFRLNWASFG----- 163 (413)
Q Consensus 108 v~~~~~~~~~~~g~~~g~afV~f~----~~~~A~~a~~~l~g~~~~~~~~---------------~~~~~~~~~~----- 163 (413)
..+|+|..+ ..-||.|+ +..-..+.+..|+|..+...+. ..+.+|...-
T Consensus 67 ~dsckires-------nid~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kd 139 (445)
T KOG2891|consen 67 FDSCKIRES-------NIDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKD 139 (445)
T ss_pred ccceeeccc-------ccceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhh
Confidence 355666544 36788886 4455667777889977643211 1112222100
Q ss_pred CCCCCCCCCCceEEecCCCCCC------------CHHHHHHHHhhhCCCcceeEEE
Q 015091 164 AGEKRDDTPDHTIFVGDLAADV------------TDYMLQETFRARYPSTKGAKVV 207 (413)
Q Consensus 164 ~~~~~~~~~~~~l~v~~lp~~~------------~~~~l~~~f~~~~g~v~~~~~~ 207 (413)
-.+........+|++.+||..+ +++-|+..| ..||+|..+.|.
T Consensus 140 mdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~-eafg~ir~vdip 194 (445)
T KOG2891|consen 140 MDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAF-EAFGEIRNVDIP 194 (445)
T ss_pred hhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHH-HHhccceecCCc
Confidence 0111223334578888887543 456788999 899999988774
No 238
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=67.28 E-value=14 Score=24.40 Aligned_cols=18 Identities=28% Similarity=0.658 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCCeEEEEe
Q 015091 297 EHLRELFSQYGQLVHVKI 314 (413)
Q Consensus 297 ~~l~~~f~~~G~i~~v~~ 314 (413)
++||++|+..|.|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999976655
No 239
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=65.73 E-value=35 Score=22.26 Aligned_cols=54 Identities=15% Similarity=0.109 Sum_probs=41.9
Q ss_pred eEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCH----HHHHHHHHH
Q 015091 284 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADR----SCAEEALRM 337 (413)
Q Consensus 284 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~----~~a~~a~~~ 337 (413)
++.|.|+.=.--...|++.+...-.|.++.+....+.+-|+|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 466777766666788999999998899999999889999999755 445555554
No 240
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.01 E-value=23 Score=32.88 Aligned_cols=56 Identities=18% Similarity=0.076 Sum_probs=45.6
Q ss_pred CcceeeecCCCCCCCHHHHHHHhhccCc-eEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 015091 80 EIRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142 (413)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~-v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~ 142 (413)
-...|-|.++|.....+||...|+.|+. -.+|+-+.|. .||..|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 3567889999999988999999999975 4555555553 899999999999999954
No 241
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=60.88 E-value=2.1 Score=41.16 Aligned_cols=70 Identities=7% Similarity=0.062 Sum_probs=53.6
Q ss_pred cceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCC
Q 015091 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN 150 (413)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~ 150 (413)
.++|+++|++++++-.+|..+|+.+--+..+-+.....-.+...+.+|.|+---....|+..||+..+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 4689999999999999999999998766666554433334456788999997777777777778876643
No 242
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=60.88 E-value=8.5 Score=40.75 Aligned_cols=9 Identities=44% Similarity=0.597 Sum_probs=4.0
Q ss_pred ceEEEEEEe
Q 015091 107 EVVAVKVIR 115 (413)
Q Consensus 107 ~v~~~~~~~ 115 (413)
.+..+++..
T Consensus 135 ~~~evkvly 143 (2365)
T COG5178 135 DVSEVKVLY 143 (2365)
T ss_pred hhheeeEEe
Confidence 344444443
No 243
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.69 E-value=15 Score=34.06 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=44.6
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcCCC-eEEEEeeCCCcEEEEEecCHHHHHHHHHH
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQYGQ-LVHVKIPAGKRCGFVQFADRSCAEEALRM 337 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~v~~~~~~~~afV~f~~~~~a~~a~~~ 337 (413)
-.+.|-|.++|.....+||...|+.|+. =.+|... ++..+|-.|.+...|..||-.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWv-DdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWV-DDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEe-ecceeEEeecchHHHHHHhhc
Confidence 4478999999999988999999999863 2344444 345899999999999999874
No 244
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=58.33 E-value=52 Score=30.71 Aligned_cols=77 Identities=21% Similarity=0.339 Sum_probs=57.2
Q ss_pred CCCCCCCceEEEecCCCC-CCHHHHHHHHhcC----CCeEEEEeeC----------------------------------
Q 015091 276 SDDDPNNTTVFVGNLDSI-VTDEHLRELFSQY----GQLVHVKIPA---------------------------------- 316 (413)
Q Consensus 276 ~~~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~----G~i~~v~~~~---------------------------------- 316 (413)
......+..|-|.|+.++ +..++|...|+.| |.|..|.|-.
T Consensus 140 pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~ 219 (622)
T COG5638 140 PEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFG 219 (622)
T ss_pred cCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccC
Confidence 334456778999999885 7888999988877 6777777710
Q ss_pred ------------------CCc-------------------EEEEEecCHHHHHHHHHHhcCceeCCe--eEEEEe
Q 015091 317 ------------------GKR-------------------CGFVQFADRSCAEEALRMLNGTQLGGQ--NIRLSW 352 (413)
Q Consensus 317 ------------------~~~-------------------~afV~f~~~~~a~~a~~~l~~~~~~g~--~l~v~~ 352 (413)
+++ +|.|++.+.+.+......++|.++... .+.+.|
T Consensus 220 ~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRf 294 (622)
T COG5638 220 DDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRF 294 (622)
T ss_pred CccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeee
Confidence 011 688999999999999999999987654 444444
No 245
>PHA03378 EBNA-3B; Provisional
Probab=53.85 E-value=99 Score=31.21 Aligned_cols=25 Identities=8% Similarity=-0.157 Sum_probs=13.9
Q ss_pred CCcceeeecCCCC--CCCHHHHHHHhh
Q 015091 79 GEIRTLWIGDLQY--WMDETYLNTCFA 103 (413)
Q Consensus 79 ~~~~~l~v~~lp~--~~~~~~l~~~f~ 103 (413)
.....|...-++- .-++.-|++++.
T Consensus 804 P~~~q~~~~~~~gq~gp~k~ilrqllt 830 (991)
T PHA03378 804 PTSMQLMPRAAPGQQGPTKQILRQLLT 830 (991)
T ss_pred CccceecCCCCccccCcHHHHHHHHhh
Confidence 3445555555552 345666777664
No 246
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=52.30 E-value=3.8 Score=39.47 Aligned_cols=67 Identities=18% Similarity=0.250 Sum_probs=51.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCe
Q 015091 280 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQ 346 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~ 346 (413)
...++||+.|+..+++-++|..+|+.+-.+.++.+... ..+.+|+|+-.-....|+.+|++..+...
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 34578999999999999999999999877777777543 45789999866666666666776665444
No 247
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=50.94 E-value=78 Score=23.86 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHHhhh--CCCcceeEEEEcCCCCCCceeEEEEeCCH
Q 015091 182 AADVTDYMLQETFRAR--YPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226 (413)
Q Consensus 182 p~~~~~~~l~~~f~~~--~g~v~~~~~~~~~~~g~~~g~afv~f~~~ 226 (413)
|...|..++++.|++. |-.|..-.+.+|-.-..+-..||..|...
T Consensus 83 PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 83 PYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred ceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 6688999999999542 22233333333333333556788888654
No 248
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=50.53 E-value=30 Score=26.40 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=20.4
Q ss_pred CCHHHHHHHHhcCCCeEEEEeeCC---CcEEEEEecCHHH
Q 015091 294 VTDEHLRELFSQYGQLVHVKIPAG---KRCGFVQFADRSC 330 (413)
Q Consensus 294 ~~~~~l~~~f~~~G~i~~v~~~~~---~~~afV~f~~~~~ 330 (413)
++.++|++.|+.|..++-..+-.. +++++|+|.+.-.
T Consensus 29 ~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWS 68 (116)
T ss_dssp --SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHH
T ss_pred cCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChH
Confidence 356899999999977653333222 5799999986543
No 249
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=49.80 E-value=19 Score=28.80 Aligned_cols=107 Identities=13% Similarity=0.099 Sum_probs=57.3
Q ss_pred CCHHHHHHHhhc-cCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeeecc-CCCCCCCCC
Q 015091 93 MDETYLNTCFAH-TGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS-FGAGEKRDD 170 (413)
Q Consensus 93 ~~~~~l~~~f~~-~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~-~~~~~~~~~ 170 (413)
.+-..|.+.+.. .+....+.+..-. .++..+.|.+.+++.++++. ....+.+..+.+. .|.. .......-.
T Consensus 29 ~~~~~l~~~l~~~W~~~~~~~i~~l~-----~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~-~W~~~~~~~~~~~~ 101 (153)
T PF14111_consen 29 ISLSALEQELAKIWKLKGGVKIRDLG-----DNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQ-RWSPDFNPSEVKFE 101 (153)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEEeC-----CCeEEEEEEeccceeEEEec-ccccccccchhhh-hhccccccccccee
Confidence 455666666644 2333233333211 27999999999999999853 2222322222221 2221 111111111
Q ss_pred CCCceEEecCCCCCC-CHHHHHHHHhhhCCCcceeEEE
Q 015091 171 TPDHTIFVGDLAADV-TDYMLQETFRARYPSTKGAKVV 207 (413)
Q Consensus 171 ~~~~~l~v~~lp~~~-~~~~l~~~f~~~~g~v~~~~~~ 207 (413)
....-|-|.|||... +++-++.+. +..|.+..++..
T Consensus 102 ~~~vWVri~glP~~~~~~~~~~~i~-~~iG~~i~vD~~ 138 (153)
T PF14111_consen 102 HIPVWVRIYGLPLHLWSEEILKAIG-SKIGEPIEVDEN 138 (153)
T ss_pred ccchhhhhccCCHHHhhhHHHHHHH-HhcCCeEEEEcC
Confidence 223346677999974 555566666 899988776653
No 250
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=49.53 E-value=13 Score=30.41 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=45.3
Q ss_pred cceeeecCCCCCCC-----HHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCC
Q 015091 81 IRTLWIGDLQYWMD-----ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG 151 (413)
Q Consensus 81 ~~~l~v~~lp~~~~-----~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~ 151 (413)
..++.+.++...+- .....++|..|.+..-.++++.. +..-|.|.+++.|..|...+++..+.++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf------rrvRi~f~~p~~a~~a~i~~~~~~f~~~ 79 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF------RRVRINFSNPEAAADARIKLHSTSFNGK 79 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh------ceeEEeccChhHHHHHHHHhhhcccCCC
Confidence 34577777776642 22334567766665555554433 6788999999999999999999988775
No 251
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=46.80 E-value=1e+02 Score=21.99 Aligned_cols=58 Identities=7% Similarity=0.140 Sum_probs=41.3
Q ss_pred EEecCCCCCCCHHHHHHHHhhhCC-CcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhh
Q 015091 176 IFVGDLAADVTDYMLQETFRARYP-STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (413)
Q Consensus 176 l~v~~lp~~~~~~~l~~~f~~~~g-~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l 236 (413)
-|.-.++.+++..+|++.++.-|+ .|.+++.+... ...--|||.+...++|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
Confidence 455567889999999999976676 35566665543 23446899999888888776443
No 252
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=41.66 E-value=1.6e+02 Score=27.72 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=31.1
Q ss_pred CCCCcceeeecCCCCC-CCHHHHHHHhhcc----CceEEEEEEec
Q 015091 77 QPGEIRTLWIGDLQYW-MDETYLNTCFAHT----GEVVAVKVIRN 116 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~----G~v~~~~~~~~ 116 (413)
....+.+|-|-|+.|+ +...+|...|+.| |.+..|.|...
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 3566788999999987 7889999988876 45777877654
No 253
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=41.55 E-value=95 Score=21.71 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=39.6
Q ss_pred EEEecCCCCCCHHHHHHHHhc-CC-CeEEEEe---eCCCcEEEEEecCHHHHHHHHHHh
Q 015091 285 VFVGNLDSIVTDEHLRELFSQ-YG-QLVHVKI---PAGKRCGFVQFADRSCAEEALRML 338 (413)
Q Consensus 285 l~v~nlp~~~~~~~l~~~f~~-~G-~i~~v~~---~~~~~~afV~f~~~~~a~~a~~~l 338 (413)
-|+-.+....+..+|+..++. |+ .|.+|.. ..+..-|||++..-+.|......+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 555667789999999999986 44 4555544 334578999999888888766554
No 254
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=41.37 E-value=1e+02 Score=21.35 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCCeEEEEeeCC--CcEEEEEecCHHHHHHHHHHhc
Q 015091 297 EHLRELFSQYGQLVHVKIPAG--KRCGFVQFADRSCAEEALRMLN 339 (413)
Q Consensus 297 ~~l~~~f~~~G~i~~v~~~~~--~~~afV~f~~~~~a~~a~~~l~ 339 (413)
++|++.+..+| +....+.-. -++.|+-+.+.+.+.++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 56778888898 445555544 5688888889999888887763
No 255
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=41.13 E-value=97 Score=29.99 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=16.6
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhc
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAH 104 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~ 104 (413)
....++|-.--+-.++...|..+|+.
T Consensus 304 r~~~t~W~s~D~~~~D~~r~~~LFEs 329 (817)
T KOG1925|consen 304 RPCATLWASLDPVSVDTARLEHLFES 329 (817)
T ss_pred cccchhhhccCcceecHHHHHHHHHH
Confidence 44455554444455788888999864
No 256
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=40.73 E-value=14 Score=34.30 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=50.1
Q ss_pred cceeeecCCCCCCCHH--------HHHHHhhc--cCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHH
Q 015091 81 IRTLWIGDLQYWMDET--------YLNTCFAH--TGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141 (413)
Q Consensus 81 ~~~l~v~~lp~~~~~~--------~l~~~f~~--~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~ 141 (413)
.+.+|+.+.......+ ++...|.. .+.+..+...++.....++|..|++|...+.++++..
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4667888887665554 88899988 6778888888887677888999999999999999874
No 257
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=40.42 E-value=91 Score=23.65 Aligned_cols=47 Identities=17% Similarity=0.343 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHhhhCCCcceeEEEEc----CCCCCCceeEEEEeCCHHHHHH
Q 015091 184 DVTDYMLQETFRARYPSTKGAKVVID----RLTGRTKGYGFVRFGDESEQLR 231 (413)
Q Consensus 184 ~~~~~~l~~~f~~~~g~v~~~~~~~~----~~~g~~~g~afv~f~~~~~a~~ 231 (413)
+++.++|++-+.+-|-.-.+..++.+ -..|++.|||.| |++.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 56788888888666655444444332 224677777766 666666554
No 258
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=40.17 E-value=42 Score=23.00 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=22.5
Q ss_pred cEEEEEecCHHHHHHHHHHhcCceeCCe
Q 015091 319 RCGFVQFADRSCAEEALRMLNGTQLGGQ 346 (413)
Q Consensus 319 ~~afV~f~~~~~a~~a~~~l~~~~~~g~ 346 (413)
.+.+|+|.+..+|.+|-+.|....+..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 3689999999999999998876655433
No 259
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=40.00 E-value=97 Score=22.10 Aligned_cols=54 Identities=20% Similarity=0.336 Sum_probs=39.6
Q ss_pred EEEecCCCCCCHHHHHHHHhc-CC-CeEEEEe---eCCCcEEEEEecCHHHHHHHHHHh
Q 015091 285 VFVGNLDSIVTDEHLRELFSQ-YG-QLVHVKI---PAGKRCGFVQFADRSCAEEALRML 338 (413)
Q Consensus 285 l~v~nlp~~~~~~~l~~~f~~-~G-~i~~v~~---~~~~~~afV~f~~~~~a~~a~~~l 338 (413)
-|+--+....+..+|++.++. || .|.+|.. ..+..-|||++..-+.|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 444456778899999999986 45 4555555 344578999999999888876654
No 260
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=38.09 E-value=1.4e+02 Score=20.88 Aligned_cols=58 Identities=9% Similarity=0.120 Sum_probs=40.9
Q ss_pred eEEecCCCCCCCHHHHHHHHhhhCC-CcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHh
Q 015091 175 TIFVGDLAADVTDYMLQETFRARYP-STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (413)
Q Consensus 175 ~l~v~~lp~~~~~~~l~~~f~~~~g-~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~ 235 (413)
+-|+-.++.+++..+|++.++.-|+ .|.+++.+..+ ...--|||.+...+.|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHh
Confidence 3455678899999999999966676 35556555543 2244589999888887776543
No 261
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=38.06 E-value=1.9e+02 Score=22.48 Aligned_cols=59 Identities=12% Similarity=0.074 Sum_probs=42.2
Q ss_pred CCHHHHHHHHhcCC-CeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEecc
Q 015091 294 VTDEHLRELFSQYG-QLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354 (413)
Q Consensus 294 ~~~~~l~~~f~~~G-~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 354 (413)
.+-+.+.+.++.-| .++++.... +...|+|++.++-.+|...|....=++..|.+..+.
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~~~--~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITPEN--DSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEeeC--CEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 45677888888877 345555544 488999999999999988886555455566666544
No 262
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=37.71 E-value=1.2e+02 Score=20.64 Aligned_cols=46 Identities=15% Similarity=0.157 Sum_probs=35.7
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCH
Q 015091 283 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADR 328 (413)
Q Consensus 283 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~ 328 (413)
..+.|.++.=.--...+++..+.-..|.++.+...++.+.|+|++.
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~ 49 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSN 49 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCC
Confidence 3466666654445567888888888899999998888999999883
No 263
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=37.14 E-value=38 Score=31.16 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=25.8
Q ss_pred EEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCC
Q 015091 321 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 357 (413)
Q Consensus 321 afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 357 (413)
|||+|++.++|..|++.+.... .+.++++.|-++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc
Confidence 7999999999999999765444 3455776665543
No 264
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=36.82 E-value=78 Score=29.10 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=34.0
Q ss_pred EEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeeeccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHH
Q 015091 126 GFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETF 194 (413)
Q Consensus 126 afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f 194 (413)
|||.|++..+|..|++.+....- .+..++. ..+.+.+.=.||..+..+..++..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~------------APeP~DI~W~NL~~~~~~r~~R~~~ 55 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSP------------APEPDDIIWENLSISSKQRFLRRII 55 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEee------------CCCcccccccccCCChHHHHHHHHH
Confidence 79999999999999986544332 1222222 2223345556776666666666555
No 265
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=36.33 E-value=53 Score=27.00 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=36.2
Q ss_pred ceeeecCCCCCCCHHHHHHHhhcc-CceEEEEEEecCCCC--CcccEEEEEEcCHHHHHHHHHH
Q 015091 82 RTLWIGDLQYWMDETYLNTCFAHT-GEVVAVKVIRNKQTG--QIEGYGFIEFISRAGAERVLQT 142 (413)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~-G~v~~~~~~~~~~~g--~~~g~afV~f~~~~~A~~a~~~ 142 (413)
+++|.. .|++.|.++..-. |.+..|...+.. .+ ..+|-.||.|.+.+.|.++++.
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 455555 4555554443322 577777765543 23 4578999999999999998864
No 266
>PRK15313 autotransport protein MisL; Provisional
Probab=36.32 E-value=1.1e+02 Score=32.45 Aligned_cols=8 Identities=0% Similarity=0.061 Sum_probs=3.4
Q ss_pred ceeeecCC
Q 015091 82 RTLWIGDL 89 (413)
Q Consensus 82 ~~l~v~~l 89 (413)
.-.|+.|+
T Consensus 639 vgsY~ANl 646 (955)
T PRK15313 639 VGSYLANN 646 (955)
T ss_pred hHHHHHHH
Confidence 33444443
No 267
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=35.97 E-value=35 Score=31.65 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=48.7
Q ss_pred CcceeeecCCCCCCCHHHHHHHhhccCc-eEEEEEEecCCC--CCcccEEEEEEcCHHHHHHHHHHhCCCcC
Q 015091 80 EIRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQT--GQIEGYGFIEFISRAGAERVLQTFNGTPM 148 (413)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~-v~~~~~~~~~~~--g~~~g~afV~f~~~~~A~~a~~~l~g~~~ 148 (413)
..+.|.|..||...++++|.+....+-. |.-..+...... ..-.+.|||.|...++.......++|..+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 4567899999999999999888777643 333333321110 11246799999999998888888888665
No 268
>COG4907 Predicted membrane protein [Function unknown]
Probab=33.39 E-value=53 Score=31.35 Aligned_cols=14 Identities=14% Similarity=0.064 Sum_probs=8.6
Q ss_pred HHHHHHHHHhcCce
Q 015091 329 SCAEEALRMLNGTQ 342 (413)
Q Consensus 329 ~~a~~a~~~l~~~~ 342 (413)
+.+.+|++.+...+
T Consensus 526 dkVvkam~~~~~~e 539 (595)
T COG4907 526 DKVVKAMRKALDME 539 (595)
T ss_pred HHHHHHHHHhCcHh
Confidence 56666777665544
No 269
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=32.89 E-value=37 Score=29.20 Aligned_cols=35 Identities=26% Similarity=0.464 Sum_probs=29.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEe
Q 015091 280 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI 314 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~ 314 (413)
....++|+-|||..++++-|..+.+..|.+..+.+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 34578999999999999999999999987665555
No 270
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=31.24 E-value=1.1e+02 Score=22.14 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=35.3
Q ss_pred cCCCCCCHHHHHHHHhcCCCe-EEEEeeCC--CcEEEEEecCHHHHHHHHHHhc
Q 015091 289 NLDSIVTDEHLRELFSQYGQL-VHVKIPAG--KRCGFVQFADRSCAEEALRMLN 339 (413)
Q Consensus 289 nlp~~~~~~~l~~~f~~~G~i-~~v~~~~~--~~~afV~f~~~~~a~~a~~~l~ 339 (413)
.+-..++...|..-|-..|.= +...+.+| +..|.|+|.+.+.+..|...|.
T Consensus 19 S~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred ecCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 445666777777666655532 23334444 6799999999999999988764
No 271
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=30.62 E-value=43 Score=28.85 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=30.4
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEE
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVK 112 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~ 112 (413)
...+..+||+-|+|...|++.|.++.+.+|-+..+.
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 456788999999999999999999999998654443
No 272
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=30.46 E-value=1.5e+02 Score=19.05 Aligned_cols=54 Identities=9% Similarity=-0.001 Sum_probs=40.8
Q ss_pred eeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCH----HHHHHHHHH
Q 015091 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISR----AGAERVLQT 142 (413)
Q Consensus 83 ~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~----~~A~~a~~~ 142 (413)
|+.|.|+.-.--...|.+.+...-.|.++.+-... +.+-|.|... +...++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHH
Confidence 56777888777788899999999889999886654 5788888744 555666554
No 273
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=30.05 E-value=48 Score=31.83 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=7.8
Q ss_pred ccEEEEEEcCHH
Q 015091 123 EGYGFIEFISRA 134 (413)
Q Consensus 123 ~g~afV~f~~~~ 134 (413)
+.-++|.|.+..
T Consensus 123 ~~~GlIAY~~~~ 134 (465)
T PF01690_consen 123 KWDGLIAYDNSS 134 (465)
T ss_pred ceeeeEEecCcc
Confidence 345777777655
No 274
>PRK11901 hypothetical protein; Reviewed
Probab=29.29 E-value=4.6e+02 Score=24.16 Aligned_cols=64 Identities=22% Similarity=0.302 Sum_probs=43.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEE--EEcCHHHHHHHHHHhCCC
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFI--EFISRAGAERVLQTFNGT 146 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV--~f~~~~~A~~a~~~l~g~ 146 (413)
+....+|-|..+. .++.|..|..+.+ +..+++.+....|+. .|.+| .|.+.++|..|+..|-..
T Consensus 242 p~~~YTLQL~Aas---~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 242 PASHYTLQLSSAS---RSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCCCeEEEeecCC---CHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHH
Confidence 4455666666543 5788888888875 455677665544443 44433 589999999999886653
No 275
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=27.10 E-value=2.7e+02 Score=20.87 Aligned_cols=48 Identities=21% Similarity=0.229 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHhhhCCCcceeEEEEcCC--CC--CCceeEEEEeCCHHHHHH
Q 015091 183 ADVTDYMLQETFRARYPSTKGAKVVIDRL--TG--RTKGYGFVRFGDESEQLR 231 (413)
Q Consensus 183 ~~~~~~~l~~~f~~~~g~v~~~~~~~~~~--~g--~~~g~afv~f~~~~~a~~ 231 (413)
.+-+..+|++.+...++.-.+..++..-. .| +++||+-| |.|.+.+..
T Consensus 30 ~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~~ 81 (107)
T COG2004 30 PTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAKK 81 (107)
T ss_pred CCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHHh
Confidence 45678899998877788766665555433 24 44555443 555555443
No 276
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=26.89 E-value=1.1e+02 Score=20.08 Aligned_cols=43 Identities=21% Similarity=0.178 Sum_probs=26.1
Q ss_pred CHHHHHHHHhcCC-CeEEEEeeCC--CcEEEEEecCHHHHHHHHHH
Q 015091 295 TDEHLRELFSQYG-QLVHVKIPAG--KRCGFVQFADRSCAEEALRM 337 (413)
Q Consensus 295 ~~~~l~~~f~~~G-~i~~v~~~~~--~~~afV~f~~~~~a~~a~~~ 337 (413)
.-.+|.+.|.+.| .|.++..... +...-+.+++.+.|.++++.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 3457888888776 5777665433 33334445666666666664
No 277
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=26.35 E-value=1.2e+02 Score=21.42 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=24.3
Q ss_pred CeEEEEeeCC-CcEEEEEecCHHHHHHHHHHhcCce
Q 015091 308 QLVHVKIPAG-KRCGFVQFADRSCAEEALRMLNGTQ 342 (413)
Q Consensus 308 ~i~~v~~~~~-~~~afV~f~~~~~a~~a~~~l~~~~ 342 (413)
.|.++....+ +|+-|||=.+..++..|+..+.+..
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 4566655544 8999999999999999998775544
No 278
>PF14893 PNMA: PNMA
Probab=26.18 E-value=78 Score=29.26 Aligned_cols=45 Identities=13% Similarity=0.307 Sum_probs=0.0
Q ss_pred ceEEEecCCCCCCHHHHHHHHhc-CCCeEEEEe-------eCCCcEEEEEecC
Q 015091 283 TTVFVGNLDSIVTDEHLRELFSQ-YGQLVHVKI-------PAGKRCGFVQFAD 327 (413)
Q Consensus 283 ~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~~-------~~~~~~afV~f~~ 327 (413)
+.|.|.+||.+|++++|.+.+.. .-.+-..++ ..+..-++|+|..
T Consensus 19 r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 19 RALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred hhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccc
No 279
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=26.11 E-value=55 Score=31.41 Aligned_cols=8 Identities=13% Similarity=0.347 Sum_probs=3.5
Q ss_pred eeeecCCC
Q 015091 83 TLWIGDLQ 90 (413)
Q Consensus 83 ~l~v~~lp 90 (413)
.|-|+.|+
T Consensus 52 ~I~v~~l~ 59 (465)
T PF01690_consen 52 SISVRSLN 59 (465)
T ss_pred ceEeeccC
Confidence 34444444
No 280
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=25.82 E-value=62 Score=18.87 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHhcCCCeE
Q 015091 293 IVTDEHLRELFSQYGQLV 310 (413)
Q Consensus 293 ~~~~~~l~~~f~~~G~i~ 310 (413)
..++++|++.+..+|.+.
T Consensus 3 tWs~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPV 20 (38)
T ss_pred CCCHHHHHHHHHHcCCCC
Confidence 578999999999998654
No 281
>PRK11901 hypothetical protein; Reviewed
Probab=25.52 E-value=2.3e+02 Score=25.98 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=39.4
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeE--EEEeCCHHHHHHHHHhhCC
Q 015091 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYG--FVRFGDESEQLRAMTEMNG 238 (413)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~a--fv~f~~~~~a~~a~~~l~~ 238 (413)
....+|-+..+ ..++.|..|. +..+ +..+.+.....+|+.. |. +-.|.+.++|..|++.|-.
T Consensus 243 ~~~YTLQL~Aa---s~~~~L~~f~-~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 243 ASHYTLQLSSA---SRSDTLNAYA-KKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCeEEEeecC---CCHHHHHHHH-HHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 33445555543 4577788877 5554 4566666655555443 32 3348999999999987754
No 282
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=25.19 E-value=40 Score=31.90 Aligned_cols=11 Identities=18% Similarity=0.293 Sum_probs=5.7
Q ss_pred EEEEEecCHHH
Q 015091 320 CGFVQFADRSC 330 (413)
Q Consensus 320 ~afV~f~~~~~ 330 (413)
--|+||.=.|.
T Consensus 452 gDy~EfpvPEQ 462 (480)
T KOG2675|consen 452 GDYVEFPVPEQ 462 (480)
T ss_pred CCcccccChHH
Confidence 34555555554
No 283
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=24.60 E-value=1.3e+02 Score=20.38 Aligned_cols=64 Identities=8% Similarity=0.082 Sum_probs=40.5
Q ss_pred HHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCCC
Q 015091 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254 (413)
Q Consensus 188 ~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 254 (413)
++|.+.|....-.|..+.-+....++.....-||++....+...+ ++=..+.+..+.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 466777734334676776666665666677778888766553332 3445677888888766543
No 284
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.49 E-value=14 Score=34.63 Aligned_cols=94 Identities=6% Similarity=-0.102 Sum_probs=0.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEec
Q 015091 280 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 353 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 353 (413)
..+...|+..++...+++++.-.|..||.|..+++.+- +-.+||+-.+ +++..+|..+.-..+.+..+++.++
T Consensus 1 mgs~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 1 MGSMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred CcchhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcC
Q ss_pred cCCCCCCCCCCCCCCCCCCCC
Q 015091 354 RSPSNKQAQPDPNQWNAGYYG 374 (413)
Q Consensus 354 ~~~~~~~~~~~~~~~~~g~~~ 374 (413)
......+..+...+...+-.+
T Consensus 80 ~~s~~~r~k~~~~~~~~~~~~ 100 (572)
T KOG4365|consen 80 PSSSEKRSKNPISRPLEGKKS 100 (572)
T ss_pred chhhhhhhcCccccccccccc
No 285
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=23.95 E-value=2.4e+02 Score=20.33 Aligned_cols=61 Identities=8% Similarity=0.090 Sum_probs=38.6
Q ss_pred eeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcC--HHHHHHHHHHhCCC
Q 015091 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFIS--RAGAERVLQTFNGT 146 (413)
Q Consensus 84 l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~--~~~A~~a~~~l~g~ 146 (413)
+|.-.+|.. ...|++++..++...+|.....+.++...+.++|-|.- .++.++.++.|+..
T Consensus 12 ~~~v~~PE~--pGal~~F~~~l~~~~nITeF~YR~~~~~~a~vlvgi~v~~~~~~~~l~~~L~~~ 74 (91)
T PF00585_consen 12 LFAVEFPER--PGALKRFLDALGPRNNITEFHYRYSGDDFARVLVGIEVPDAEDLEELIERLKAL 74 (91)
T ss_dssp EEEEE--BS--TTHCHHHHHCCSSSE-EEEEEEE-TTTSCSEEEEEEE-SSTHHHHHHHHHHTSS
T ss_pred EEEEECCCC--ccHHHHHHHHhCCCceEEEEEEcCCCCCeeeEEEEEEeCCHHHHHHHHHHHHHc
Confidence 444445543 34588888888887777777777777788999988874 44445666666654
No 286
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=23.58 E-value=26 Score=23.75 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhc
Q 015091 297 EHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN 339 (413)
Q Consensus 297 ~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~ 339 (413)
++|.+.|..+....++. +-.+|..|.|.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~v----kL~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIV----KLKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhh----hhhhccCCCCHHHHHHHHHHhh
Confidence 57777776543322211 1278999999999998887653
No 287
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=23.13 E-value=63 Score=18.79 Aligned_cols=15 Identities=27% Similarity=0.249 Sum_probs=10.1
Q ss_pred CCCHHHHHHHhhccC
Q 015091 92 WMDETYLNTCFAHTG 106 (413)
Q Consensus 92 ~~~~~~l~~~f~~~G 106 (413)
++++++|++.|.++.
T Consensus 20 Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIK 34 (36)
T ss_dssp ---HHHHHHHHHCS-
T ss_pred cCCHHHHHHHHHHhc
Confidence 578999999998864
No 288
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=23.07 E-value=6.1e+02 Score=23.50 Aligned_cols=113 Identities=12% Similarity=0.133 Sum_probs=57.0
Q ss_pred CCCCCCCHHHHHHH----hhccCceEEEEEEecCCCCCcccEEEEEEcCHHH-HHHHHHHhCCCcCCCCCcceeeeeccC
Q 015091 88 DLQYWMDETYLNTC----FAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAG-AERVLQTFNGTPMPNGEQNFRLNWASF 162 (413)
Q Consensus 88 ~lp~~~~~~~l~~~----f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~-A~~a~~~l~g~~~~~~~~~~~~~~~~~ 162 (413)
|.+++-+-+.++.. +++||.-.++++.+.--. .+|=+-|.|.-.-. ..+.++ +...+...++
T Consensus 119 ~~~~sPsvD~~~~v~lP~l~~~G~~~~l~v~rRG~y--P~GgGeV~~~v~p~~~l~~i~------l~~~g~i~~i----- 185 (326)
T cd00874 119 DVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGFY--PRGGGEVVLTVEPSKLLPPLL------LEERGEIEKI----- 185 (326)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCcC--CCCCEEEEEEEecccCCCcce------eecCCCeEEE-----
Confidence 45555566666654 588998788888775432 23334444432110 111111 1111111111
Q ss_pred CCCCCCCCCCCceEEecCCCCCCCHHHHHHHHh--hhCCCcceeEEEEcCCCCCCceeEEEEeC
Q 015091 163 GAGEKRDDTPDHTIFVGDLAADVTDYMLQETFR--ARYPSTKGAKVVIDRLTGRTKGYGFVRFG 224 (413)
Q Consensus 163 ~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~--~~~g~v~~~~~~~~~~~g~~~g~afv~f~ 224 (413)
.-..+..+|+..+.+..+...-. ... ...++.+..+...+.+.|++.+.+.
T Consensus 186 ----------rg~~~~~~l~~~va~r~~~~a~~~L~~~-~~~dv~i~~~~~~~~s~G~~i~L~a 238 (326)
T cd00874 186 ----------RGISHAANLPPHVAERQAEAAAALLRKA-LGLQIEIEPEDQSALGPGSGIVLWA 238 (326)
T ss_pred ----------EEEEEEccCCHHHHHHHHHHHHHHHhhc-cCCCeEEEEEecCCCCCCEEEEEEE
Confidence 11567889998887766554331 331 2234555555445677777765554
No 289
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=22.92 E-value=1.8e+02 Score=20.78 Aligned_cols=26 Identities=12% Similarity=0.433 Sum_probs=21.0
Q ss_pred ceEEEEEEecCCCCCcccEEEEEEcC
Q 015091 107 EVVAVKVIRNKQTGQIEGYGFIEFIS 132 (413)
Q Consensus 107 ~v~~~~~~~~~~~g~~~g~afV~f~~ 132 (413)
.|.+|+|..-...|+.+++|=|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47788888866668999999999975
No 290
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.74 E-value=2.3e+02 Score=22.43 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=37.4
Q ss_pred CCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 015091 88 DLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN 144 (413)
Q Consensus 88 ~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~ 144 (413)
.|+..+.++.|.++.+..|.|.+.. -.| -.+.|.+.+...+|++.+.
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEIG 164 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHHH
Confidence 3677788999999999999988776 333 3567889999999998753
No 291
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=21.81 E-value=3.5e+02 Score=28.80 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=12.2
Q ss_pred cEEEEEEcCHHHHHHHHH
Q 015091 124 GYGFIEFISRAGAERVLQ 141 (413)
Q Consensus 124 g~afV~f~~~~~A~~a~~ 141 (413)
+...+.|.+.-.|....+
T Consensus 546 ~~L~L~f~t~~la~~f~~ 563 (824)
T PRK07764 546 DTLVLGFSTGGLARRFAS 563 (824)
T ss_pred CEEEEecCCHHHHHHHhc
Confidence 456677777777766654
No 292
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=21.79 E-value=1.5e+02 Score=21.19 Aligned_cols=26 Identities=15% Similarity=0.390 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCCCCcccEEEEEEcC
Q 015091 107 EVVAVKVIRNKQTGQIEGYGFIEFIS 132 (413)
Q Consensus 107 ~v~~~~~~~~~~~g~~~g~afV~f~~ 132 (413)
.|++|++.+-...|+.+.|+-|.|.+
T Consensus 2 ~iTdVRirkv~~dgrmkA~vsvT~D~ 27 (95)
T COG2088 2 EITDVRIRKVDTDGRMKAYVSVTLDN 27 (95)
T ss_pred cceeEEEEEecCCCcEEEEEEEEecc
Confidence 47888998877778999999998875
No 293
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=21.71 E-value=2e+02 Score=21.02 Aligned_cols=38 Identities=11% Similarity=0.231 Sum_probs=23.5
Q ss_pred HHHHHhcCC--------CeEEEEeeCC-CcEEEEEecCHHHHHHHHH
Q 015091 299 LRELFSQYG--------QLVHVKIPAG-KRCGFVQFADRSCAEEALR 336 (413)
Q Consensus 299 l~~~f~~~G--------~i~~v~~~~~-~~~afV~f~~~~~a~~a~~ 336 (413)
+...|++|| .++.+.=.-. .....|+|.|.+.|..+..
T Consensus 25 ~~~a~~~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~~y~ 71 (96)
T COG5470 25 AKPAIEKFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARDCYN 71 (96)
T ss_pred hHHHHHHhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHHHhc
Confidence 445566675 3333322222 4578999999998887653
No 294
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=21.57 E-value=2.2e+02 Score=17.79 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=26.0
Q ss_pred HHHHHHHhcCC-CeEEEEeeC---CCcEEEEEecCHHHHHHHH
Q 015091 297 EHLRELFSQYG-QLVHVKIPA---GKRCGFVQFADRSCAEEAL 335 (413)
Q Consensus 297 ~~l~~~f~~~G-~i~~v~~~~---~~~~afV~f~~~~~a~~a~ 335 (413)
.++.+.|.+.| .|.++.... ++....+.+++.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 45667777765 676666543 3456667778877777765
No 295
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=21.40 E-value=1.2e+02 Score=28.35 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=44.4
Q ss_pred CceEEEecCCCCCCHHHHHHHHhcCCC-eEEEEee-CC-------CcEEEEEecCHHHHHHHHHHhcCcee
Q 015091 282 NTTVFVGNLDSIVTDEHLRELFSQYGQ-LVHVKIP-AG-------KRCGFVQFADRSCAEEALRMLNGTQL 343 (413)
Q Consensus 282 ~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~v~~~-~~-------~~~afV~f~~~~~a~~a~~~l~~~~~ 343 (413)
-..|.|.+||...++++|.+....|-. |....+. .+ ...+||.|...++...-...++|+.|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 367889999999999999887766532 2222221 11 45789999999998888887888774
No 296
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=20.98 E-value=32 Score=34.11 Aligned_cols=12 Identities=25% Similarity=0.119 Sum_probs=4.8
Q ss_pred eCCHHHHHHHHH
Q 015091 223 FGDESEQLRAMT 234 (413)
Q Consensus 223 f~~~~~a~~a~~ 234 (413)
|...|....++.
T Consensus 330 fs~vEcLL~afh 341 (556)
T PF05918_consen 330 FSYVECLLYAFH 341 (556)
T ss_dssp HHHHHHHHHHHH
T ss_pred chHhhHHHHHHH
Confidence 333444444433
No 297
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=20.72 E-value=3.1e+02 Score=27.15 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=31.9
Q ss_pred HHHHHHh----cCCCeEEEEee-----CCCcEEEEEecCHHHHHHHHHHhcC
Q 015091 298 HLRELFS----QYGQLVHVKIP-----AGKRCGFVQFADRSCAEEALRMLNG 340 (413)
Q Consensus 298 ~l~~~f~----~~G~i~~v~~~-----~~~~~afV~f~~~~~a~~a~~~l~~ 340 (413)
+|..+|. .+|.|.++.+. ..+...++.|.+.++|..++..+..
T Consensus 205 dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~ 256 (499)
T PRK11230 205 DLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIA 256 (499)
T ss_pred chHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHh
Confidence 5666664 57888888773 2345778999999999999887643
No 298
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.18 E-value=3.1e+02 Score=21.75 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=36.8
Q ss_pred cCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHh
Q 015091 289 NLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRML 338 (413)
Q Consensus 289 nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l 338 (413)
.|+..+.+|.|.++.+-+|.|.... . ..-.+.|.|.+...+|++.+
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E---~D~V~i~Gd~drVk~aLke~ 163 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-E---YDLVAIYGDSDRVKKALKEI 163 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-e---ccEEEEeccHHHHHHHHHHH
Confidence 4778889999999999999887665 1 13457789999999999875
Done!