Query 015091
Match_columns 413
No_of_seqs 382 out of 3590
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 06:31:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 8.3E-45 2.9E-49 329.0 28.5 241 79-358 20-266 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 6.1E-44 2.1E-48 324.6 26.9 247 76-356 36-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 1.8E-34 6.1E-39 249.2 14.2 167 170-357 12-182 (213)
4 4f02_A Polyadenylate-binding p 100.0 2.5E-33 8.6E-38 242.0 16.9 171 79-256 13-183 (213)
5 1l3k_A Heterogeneous nuclear r 100.0 1.5E-32 5E-37 234.7 19.4 180 76-258 8-187 (196)
6 1l3k_A Heterogeneous nuclear r 100.0 7.3E-32 2.5E-36 230.3 19.6 172 169-359 9-186 (196)
7 1b7f_A Protein (SXL-lethal pro 100.0 7.6E-32 2.6E-36 224.3 18.9 165 80-251 2-168 (168)
8 1fxl_A Paraneoplastic encephal 100.0 1E-31 3.6E-36 223.2 19.6 164 81-251 2-167 (167)
9 3md3_A Nuclear and cytoplasmic 100.0 9.1E-32 3.1E-36 223.3 18.7 165 82-252 1-165 (166)
10 3md3_A Nuclear and cytoplasmic 100.0 1.9E-31 6.5E-36 221.4 19.7 159 174-354 1-165 (166)
11 2qfj_A FBP-interacting repress 100.0 8.2E-32 2.8E-36 233.7 17.4 176 78-256 25-207 (216)
12 1b7f_A Protein (SXL-lethal pro 100.0 2.3E-31 7.8E-36 221.4 18.9 159 172-353 2-168 (168)
13 2qfj_A FBP-interacting repress 100.0 7.1E-32 2.4E-36 234.1 16.2 177 172-360 27-209 (216)
14 1fxl_A Paraneoplastic encephal 100.0 4E-31 1.4E-35 219.6 20.1 158 173-353 2-167 (167)
15 3nmr_A Cugbp ELAV-like family 100.0 5.4E-31 1.8E-35 220.7 20.6 168 80-252 2-175 (175)
16 2cjk_A Nuclear polyadenylated 100.0 7.7E-32 2.6E-36 224.0 12.6 165 80-254 2-166 (167)
17 3nmr_A Cugbp ELAV-like family 100.0 2.8E-30 9.4E-35 216.3 18.9 161 172-354 2-175 (175)
18 3pgw_A U1-A; protein-RNA compl 100.0 4.4E-30 1.5E-34 232.0 21.1 182 169-354 5-281 (282)
19 2adc_A Polypyrimidine tract-bi 100.0 8.6E-30 2.9E-34 222.4 22.1 182 169-356 30-228 (229)
20 2yh0_A Splicing factor U2AF 65 100.0 2.1E-30 7.3E-35 221.6 16.4 183 172-358 3-196 (198)
21 2cjk_A Nuclear polyadenylated 100.0 6.8E-31 2.3E-35 218.3 12.3 159 172-356 2-166 (167)
22 1fje_B Nucleolin RBD12, protei 100.0 9.9E-31 3.4E-35 219.0 12.8 164 169-356 9-174 (175)
23 3tyt_A Heterogeneous nuclear r 100.0 1.1E-29 3.7E-34 216.6 16.9 176 172-353 3-204 (205)
24 2g4b_A Splicing factor U2AF 65 100.0 1.4E-29 4.7E-34 211.5 16.8 160 79-252 2-172 (172)
25 1qm9_A Polypyrimidine tract-bi 100.0 1.6E-29 5.5E-34 216.0 17.1 179 172-356 2-197 (198)
26 2g4b_A Splicing factor U2AF 65 100.0 4.6E-29 1.6E-33 208.3 17.6 152 172-353 3-171 (172)
27 3tyt_A Heterogeneous nuclear r 100.0 4.1E-29 1.4E-33 213.1 17.1 156 80-245 3-194 (205)
28 3pgw_A U1-A; protein-RNA compl 100.0 2.1E-28 7E-33 221.0 20.3 165 77-252 5-281 (282)
29 2yh0_A Splicing factor U2AF 65 100.0 9E-29 3.1E-33 211.5 16.7 167 79-255 2-195 (198)
30 3smz_A Protein raver-1, ribonu 100.0 3.5E-28 1.2E-32 219.8 20.8 172 80-256 94-266 (284)
31 1fje_B Nucleolin RBD12, protei 100.0 1.3E-29 4.6E-34 212.1 10.2 166 77-254 9-174 (175)
32 2adc_A Polypyrimidine tract-bi 100.0 3.7E-28 1.3E-32 212.1 19.0 164 78-254 31-228 (229)
33 3sde_A Paraspeckle component 1 100.0 8E-28 2.7E-32 214.1 18.4 160 77-256 18-181 (261)
34 2ghp_A U4/U6 snRNA-associated 100.0 2.8E-28 9.7E-33 221.3 14.8 170 80-254 116-291 (292)
35 3sde_A Paraspeckle component 1 100.0 2.2E-27 7.5E-32 211.3 18.5 156 167-357 16-180 (261)
36 1qm9_A Polypyrimidine tract-bi 100.0 1.2E-27 4E-32 204.4 15.6 161 80-253 2-196 (198)
37 2kn4_A Immunoglobulin G-bindin 99.9 2.4E-22 8.3E-27 164.7 14.3 145 110-257 2-153 (158)
38 2kn4_A Immunoglobulin G-bindin 99.9 7.7E-22 2.6E-26 161.7 16.9 145 203-358 2-152 (158)
39 2i2y_A Fusion protein consists 99.9 4.2E-22 1.4E-26 161.6 13.3 138 212-356 9-148 (150)
40 4f25_A Polyadenylate-binding p 99.8 4.3E-21 1.5E-25 147.9 9.4 106 80-189 4-113 (115)
41 2i2y_A Fusion protein consists 99.8 7.1E-20 2.4E-24 148.4 12.3 126 120-254 10-148 (150)
42 4f25_A Polyadenylate-binding p 99.8 3.4E-20 1.2E-24 142.8 9.6 109 173-298 5-113 (115)
43 1sjq_A Polypyrimidine tract-bi 99.8 1.6E-19 5.5E-24 134.1 10.7 82 279-360 13-96 (105)
44 2cq1_A PTB-like protein L; RRM 99.8 9E-19 3.1E-23 130.4 13.8 83 278-360 11-95 (101)
45 3r27_A HnRNP L, heterogeneous 99.8 4.2E-19 1.4E-23 130.4 11.4 80 278-357 17-98 (100)
46 4fxv_A ELAV-like protein 1; RN 99.8 4.2E-19 1.5E-23 132.4 10.6 81 79-161 17-97 (99)
47 1h2v_Z 20 kDa nuclear CAP bind 99.8 6.3E-19 2.2E-23 143.8 12.1 80 279-358 36-121 (156)
48 1wex_A Hypothetical protein (r 99.8 1.8E-18 6.1E-23 129.7 13.2 82 278-359 11-94 (104)
49 1x4d_A Matrin 3; structural ge 99.8 6.9E-19 2.4E-23 130.8 10.8 78 280-357 13-93 (102)
50 2dgu_A Heterogeneous nuclear r 99.8 2.6E-18 8.9E-23 129.6 14.1 81 278-360 7-87 (103)
51 2wbr_A GW182, gawky, LD47780P; 99.8 1.2E-18 4.2E-23 122.9 10.5 74 281-354 6-79 (89)
52 1x4c_A Splicing factor, argini 99.8 4.4E-18 1.5E-22 129.4 14.5 80 279-359 12-96 (108)
53 2ad9_A Polypyrimidine tract-bi 99.8 1.7E-18 5.7E-23 132.1 11.5 82 279-360 28-111 (119)
54 2cq3_A RNA-binding protein 9; 99.8 6.7E-18 2.3E-22 127.4 14.5 85 276-360 9-97 (103)
55 3pgw_S U1-70K; protein-RNA com 99.8 7.1E-19 2.4E-23 166.3 10.6 80 280-359 100-185 (437)
56 4fxv_A ELAV-like protein 1; RN 99.8 1.5E-18 5E-23 129.5 10.1 81 172-253 18-98 (99)
57 2dnq_A RNA-binding protein 4B; 99.8 4.4E-18 1.5E-22 124.9 12.6 78 279-358 5-82 (90)
58 3s8s_A Histone-lysine N-methyl 99.8 1.4E-18 4.9E-23 132.0 10.1 79 79-157 4-82 (110)
59 1u6f_A Tcubp1, RNA-binding pro 99.8 9.9E-18 3.4E-22 133.9 15.4 83 276-358 36-124 (139)
60 1u6f_A Tcubp1, RNA-binding pro 99.8 8.2E-18 2.8E-22 134.4 14.9 84 78-163 39-122 (139)
61 2cpj_A Non-POU domain-containi 99.8 3.7E-18 1.3E-22 127.8 11.9 80 278-357 11-90 (99)
62 1x4g_A Nucleolysin TIAR; struc 99.8 4.8E-18 1.7E-22 129.5 12.4 81 278-358 21-101 (109)
63 1why_A Hypothetical protein ri 99.8 5.8E-18 2E-22 126.2 12.5 79 279-357 14-94 (97)
64 2cqi_A Nucleolysin TIAR; RNA r 99.8 1E-17 3.5E-22 126.4 13.9 82 277-358 10-95 (103)
65 2d9p_A Polyadenylate-binding p 99.8 5.7E-18 1.9E-22 127.8 12.3 84 277-360 10-97 (103)
66 1whw_A Hypothetical protein ri 99.8 9.1E-18 3.1E-22 125.7 13.2 80 279-358 5-90 (99)
67 2cph_A RNA binding motif prote 99.8 9.8E-18 3.3E-22 127.5 13.3 82 277-358 10-99 (107)
68 2dgt_A RNA-binding protein 30; 99.8 1.1E-17 3.7E-22 123.4 12.9 79 278-358 6-84 (92)
69 2cqb_A Peptidyl-prolyl CIS-tra 99.8 5.8E-18 2E-22 127.5 11.7 83 278-360 8-96 (102)
70 2dgo_A Cytotoxic granule-assoc 99.8 2E-17 6.8E-22 127.5 14.8 84 276-359 9-98 (115)
71 2lea_A Serine/arginine-rich sp 99.8 1.2E-18 4E-23 137.9 8.0 120 217-359 5-130 (135)
72 2dnz_A Probable RNA-binding pr 99.8 1E-17 3.6E-22 124.4 12.7 79 280-358 3-87 (95)
73 1x4f_A Matrin 3; structural ge 99.8 3.4E-18 1.2E-22 128.8 10.1 80 279-358 22-104 (112)
74 2ytc_A PRE-mRNA-splicing facto 99.8 4.6E-18 1.6E-22 123.5 10.5 77 278-354 8-85 (85)
75 2dgs_A DAZ-associated protein 99.8 1.4E-17 4.7E-22 124.7 13.1 81 278-359 6-92 (99)
76 2dgx_A KIAA0430 protein; RRM d 99.8 9.2E-18 3.1E-22 124.7 12.0 79 280-358 7-92 (96)
77 1x4a_A Splicing factor, argini 99.8 2.3E-17 8E-22 125.8 14.4 81 277-357 17-100 (109)
78 2lea_A Serine/arginine-rich sp 99.8 1.7E-18 5.8E-23 137.0 8.1 126 124-257 5-130 (135)
79 2dnm_A SRP46 splicing factor; 99.8 1E-17 3.6E-22 126.4 12.1 82 278-359 9-96 (103)
80 1rk8_A CG8781-PA, CG8781-PA pr 99.7 4.9E-18 1.7E-22 139.7 10.8 138 221-360 11-156 (165)
81 2cpf_A RNA binding motif prote 99.7 1.1E-17 3.6E-22 125.1 11.5 80 280-359 3-91 (98)
82 2cqd_A RNA-binding region cont 99.7 2.8E-17 9.5E-22 126.9 14.2 82 276-358 11-98 (116)
83 2la4_A Nuclear and cytoplasmic 99.7 4.1E-18 1.4E-22 128.1 9.2 78 279-356 24-101 (101)
84 2lxi_A RNA-binding protein 10; 99.7 2E-18 6.9E-23 126.7 7.3 77 282-358 1-85 (91)
85 1x5s_A Cold-inducible RNA-bind 99.7 1E-17 3.4E-22 126.2 11.3 82 277-358 7-94 (102)
86 1x5t_A Splicing factor 3B subu 99.7 7E-18 2.4E-22 125.6 10.3 79 280-358 3-88 (96)
87 2dnp_A RNA-binding protein 14; 99.7 1.7E-17 6E-22 121.7 12.1 77 279-357 6-82 (90)
88 2lxi_A RNA-binding protein 10; 99.7 2.1E-18 7.3E-23 126.5 7.1 84 173-257 1-86 (91)
89 2dnh_A Bruno-like 5, RNA bindi 99.7 1.8E-17 6.2E-22 125.5 12.5 82 279-360 12-101 (105)
90 3md1_A Nuclear and cytoplasmic 99.7 1.2E-17 4E-22 120.8 10.9 76 282-357 1-82 (83)
91 2cpd_A Apobec-1 stimulating pr 99.7 3.6E-17 1.2E-21 122.4 13.9 79 278-358 11-91 (99)
92 1x5u_A Splicing factor 3B subu 99.7 2.1E-17 7.2E-22 125.2 12.8 82 277-358 10-97 (105)
93 3s8s_A Histone-lysine N-methyl 99.7 8.6E-18 2.9E-22 127.7 10.5 84 171-255 4-87 (110)
94 2cq0_A Eukaryotic translation 99.7 1.5E-17 5.2E-22 125.5 11.8 82 278-359 11-98 (103)
95 2do0_A HnRNP M, heterogeneous 99.7 5.1E-17 1.8E-21 125.0 15.0 81 278-358 11-96 (114)
96 2khc_A Testis-specific RNP-typ 99.7 1.4E-17 4.9E-22 129.0 11.8 81 76-156 35-115 (118)
97 2cpz_A CUG triplet repeat RNA- 99.7 1.9E-17 6.5E-22 127.6 12.3 83 277-359 20-108 (115)
98 2cpz_A CUG triplet repeat RNA- 99.7 2.1E-17 7.1E-22 127.4 12.5 86 76-163 20-105 (115)
99 2do4_A Squamous cell carcinoma 99.7 3.3E-17 1.1E-21 122.9 13.0 81 278-358 13-98 (100)
100 1x5p_A Negative elongation fac 99.7 5.3E-17 1.8E-21 120.9 14.0 78 279-358 12-89 (97)
101 2fy1_A RNA-binding motif prote 99.7 1.8E-17 6.2E-22 127.5 11.6 79 280-358 5-88 (116)
102 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.4E-17 4.9E-22 120.9 10.5 76 279-354 4-85 (85)
103 2div_A TRNA selenocysteine ass 99.7 1.6E-17 5.6E-22 124.3 11.1 87 77-163 5-94 (99)
104 1x4h_A RNA-binding protein 28; 99.7 4.8E-17 1.6E-21 124.6 13.6 82 278-359 11-104 (111)
105 3ex7_B RNA-binding protein 8A; 99.7 1.3E-17 4.3E-22 130.9 10.6 82 278-359 18-105 (126)
106 2la6_A RNA-binding protein FUS 99.7 2.2E-17 7.7E-22 123.5 11.5 79 78-156 10-96 (99)
107 2cqh_A IGF-II mRNA-binding pro 99.7 7.9E-18 2.7E-22 124.5 8.8 79 279-358 5-85 (93)
108 2dhg_A TRNA selenocysteine ass 99.7 1.8E-17 6.2E-22 125.3 11.0 81 279-359 6-93 (104)
109 3q2s_C Cleavage and polyadenyl 99.7 4.3E-18 1.5E-22 147.2 8.4 75 281-355 67-149 (229)
110 2dnz_A Probable RNA-binding pr 99.7 2.9E-17 9.8E-22 122.0 11.8 82 79-162 3-84 (95)
111 2x1f_A MRNA 3'-END-processing 99.7 2.3E-17 7.8E-22 122.7 11.2 77 282-358 2-84 (96)
112 3n9u_C Cleavage and polyadenyl 99.7 8.2E-18 2.8E-22 136.2 9.4 79 79-157 53-133 (156)
113 1wf1_A RNA-binding protein RAL 99.7 2.5E-17 8.4E-22 125.8 11.6 77 280-358 25-102 (110)
114 1x5u_A Splicing factor 3B subu 99.7 2.6E-17 8.9E-22 124.7 11.5 85 77-163 11-95 (105)
115 1wi8_A EIF-4B, eukaryotic tran 99.7 4.5E-17 1.5E-21 123.0 12.7 78 279-358 12-96 (104)
116 2e5h_A Zinc finger CCHC-type a 99.7 3.3E-17 1.1E-21 121.4 11.8 78 277-354 11-94 (94)
117 2jrs_A RNA-binding protein 39; 99.7 3.4E-17 1.2E-21 124.2 12.1 82 76-157 21-102 (108)
118 2lkz_A RNA-binding protein 5; 99.7 9.5E-18 3.3E-22 123.5 8.6 76 280-355 7-94 (95)
119 1whx_A Hypothetical protein ri 99.7 1.4E-17 4.7E-22 127.1 9.7 77 281-357 9-85 (111)
120 2cqc_A Arginine/serine-rich sp 99.7 4E-17 1.4E-21 121.2 12.0 83 77-161 11-93 (95)
121 4a8x_A RNA-binding protein wit 99.7 3.2E-17 1.1E-21 119.9 11.1 77 281-357 3-86 (88)
122 2kxn_B Transformer-2 protein h 99.7 3.1E-17 1E-21 128.6 11.6 81 77-157 42-122 (129)
123 2dnm_A SRP46 splicing factor; 99.7 2E-17 7E-22 124.7 10.2 83 77-161 9-91 (103)
124 2dgs_A DAZ-associated protein 99.7 5.2E-17 1.8E-21 121.5 12.4 82 77-161 6-87 (99)
125 3bs9_A Nucleolysin TIA-1 isofo 99.7 2E-17 6.9E-22 120.7 9.8 81 79-161 4-84 (87)
126 2cpe_A RNA-binding protein EWS 99.7 4.2E-17 1.5E-21 125.2 12.0 82 277-358 10-105 (113)
127 2dgp_A Bruno-like 4, RNA bindi 99.7 3.9E-17 1.3E-21 123.9 11.6 87 77-163 9-96 (106)
128 3p5t_L Cleavage and polyadenyl 99.7 7.4E-18 2.5E-22 123.7 7.3 77 82-158 2-80 (90)
129 2dnh_A Bruno-like 5, RNA bindi 99.7 9E-17 3.1E-21 121.7 13.5 86 77-163 11-97 (105)
130 2kvi_A Nuclear polyadenylated 99.7 1.3E-17 4.6E-22 123.9 8.7 78 279-358 7-85 (96)
131 2jvr_A Nucleolar protein 3; RN 99.7 1.5E-17 5E-22 125.9 8.9 76 281-356 27-105 (111)
132 1whw_A Hypothetical protein ri 99.7 4.3E-17 1.5E-21 122.0 11.4 84 78-163 5-88 (99)
133 2cq2_A Hypothetical protein LO 99.7 2.9E-17 9.8E-22 123.8 10.4 78 280-357 23-107 (114)
134 2xnq_A Nuclear polyadenylated 99.7 5E-17 1.7E-21 120.8 11.7 77 278-356 18-95 (97)
135 2dgv_A HnRNP M, heterogeneous 99.7 2.6E-17 8.7E-22 121.5 9.9 80 279-358 5-88 (92)
136 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.6E-17 5.6E-22 136.5 9.8 128 128-256 11-154 (165)
137 2jvo_A Nucleolar protein 3; nu 99.7 2.7E-17 9.3E-22 124.7 10.2 80 277-358 26-105 (108)
138 2dgp_A Bruno-like 4, RNA bindi 99.7 4.8E-17 1.7E-21 123.4 11.5 82 277-358 8-98 (106)
139 3ns6_A Eukaryotic translation 99.7 1.2E-17 4.2E-22 124.9 8.0 79 78-156 3-88 (100)
140 2err_A Ataxin-2-binding protei 99.7 2.3E-17 8E-22 125.5 9.7 81 276-356 23-107 (109)
141 2dgo_A Cytotoxic granule-assoc 99.7 1.1E-16 3.6E-21 123.4 13.5 93 165-258 7-99 (115)
142 2hvz_A Splicing factor, argini 99.7 2.1E-17 7.3E-22 124.2 9.4 76 283-358 1-77 (101)
143 2ywk_A Putative RNA-binding pr 99.7 2.9E-17 9.8E-22 122.0 10.0 78 278-355 12-94 (95)
144 2cpi_A CCR4-NOT transcription 99.7 4.7E-17 1.6E-21 124.3 11.4 78 280-357 13-102 (111)
145 2do4_A Squamous cell carcinoma 99.7 7.2E-17 2.4E-21 121.0 12.2 82 77-161 13-94 (100)
146 1p27_B RNA-binding protein 8A; 99.7 6.2E-17 2.1E-21 122.8 11.9 80 78-157 20-99 (106)
147 2dng_A Eukaryotic translation 99.7 7.8E-17 2.7E-21 121.5 12.3 79 278-358 11-95 (103)
148 2dhg_A TRNA selenocysteine ass 99.7 9.5E-17 3.2E-21 121.3 12.7 80 77-157 5-86 (104)
149 2lkz_A RNA-binding protein 5; 99.7 1.2E-17 4.2E-22 122.9 7.4 82 171-253 7-94 (95)
150 1x5s_A Cold-inducible RNA-bind 99.7 6.5E-17 2.2E-21 121.8 11.4 80 78-157 9-88 (102)
151 3p5t_L Cleavage and polyadenyl 99.7 2.2E-17 7.5E-22 121.1 8.5 82 174-256 2-85 (90)
152 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.6E-17 8.8E-22 119.5 8.7 78 78-155 4-81 (85)
153 2cph_A RNA binding motif prote 99.7 1.2E-16 3.9E-21 121.5 12.8 85 77-163 11-97 (107)
154 1sjq_A Polypyrimidine tract-bi 99.7 4.2E-17 1.4E-21 121.1 9.9 80 77-164 12-93 (105)
155 1x4h_A RNA-binding protein 28; 99.7 8.7E-17 3E-21 123.1 11.7 85 77-163 11-101 (111)
156 1oo0_B CG8781-PA, drosophila Y 99.7 6.7E-17 2.3E-21 123.5 11.0 80 279-358 23-108 (110)
157 2hvz_A Splicing factor, argini 99.7 2.6E-17 9E-22 123.7 8.6 94 82-182 1-100 (101)
158 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.8E-17 6.2E-22 124.1 7.6 78 78-157 16-94 (100)
159 2cqc_A Arginine/serine-rich sp 99.7 7.9E-17 2.7E-21 119.6 11.0 87 166-253 8-94 (95)
160 2cq0_A Eukaryotic translation 99.7 6.4E-17 2.2E-21 122.0 10.6 91 166-257 8-98 (103)
161 2fc9_A NCL protein; structure 99.7 1.3E-16 4.4E-21 119.9 12.2 82 277-358 10-93 (101)
162 2dh8_A DAZ-associated protein 99.7 5.5E-17 1.9E-21 122.8 10.2 82 276-358 10-97 (105)
163 2khc_A Testis-specific RNP-typ 99.7 6.8E-17 2.3E-21 125.1 10.8 79 276-354 34-118 (118)
164 1s79_A Lupus LA protein; RRM, 99.7 6.7E-17 2.3E-21 121.1 10.2 78 78-157 8-85 (103)
165 3md1_A Nuclear and cytoplasmic 99.7 7.6E-17 2.6E-21 116.4 10.2 81 174-255 2-82 (83)
166 2e5j_A Methenyltetrahydrofolat 99.7 1.2E-16 4.1E-21 119.0 11.5 79 279-357 16-95 (97)
167 3bs9_A Nucleolysin TIA-1 isofo 99.7 5.5E-17 1.9E-21 118.3 9.4 83 171-254 4-86 (87)
168 3beg_B Splicing factor, argini 99.7 6E-17 2E-21 124.5 9.9 75 281-356 15-94 (115)
169 1x4e_A RNA binding motif, sing 99.7 2.1E-17 7.2E-22 119.9 7.0 76 79-154 3-78 (85)
170 3lqv_A PRE-mRNA branch site pr 99.7 4.6E-17 1.6E-21 125.5 9.2 105 78-200 5-109 (115)
171 2div_A TRNA selenocysteine ass 99.7 1.6E-16 5.3E-21 118.9 11.6 85 170-255 6-95 (99)
172 2kxn_B Transformer-2 protein h 99.7 1.3E-16 4.3E-21 125.1 11.2 87 168-255 41-127 (129)
173 2x1f_A MRNA 3'-END-processing 99.7 7.3E-17 2.5E-21 120.0 9.1 85 172-257 1-85 (96)
174 3ulh_A THO complex subunit 4; 99.7 1.5E-16 5E-21 120.9 11.0 78 277-354 24-106 (107)
175 2dng_A Eukaryotic translation 99.7 2.3E-16 7.9E-21 118.9 12.0 83 77-163 11-93 (103)
176 2cqb_A Peptidyl-prolyl CIS-tra 99.7 9.9E-17 3.4E-21 120.7 9.9 88 169-257 8-95 (102)
177 2cq4_A RNA binding motif prote 99.7 3.2E-17 1.1E-21 126.1 7.3 80 78-160 22-101 (114)
178 3ucg_A Polyadenylate-binding p 99.7 1.3E-16 4.6E-21 116.8 10.4 74 282-356 6-85 (89)
179 1nu4_A U1A RNA binding domain; 99.7 1.1E-16 3.8E-21 119.3 10.0 80 279-358 5-91 (97)
180 2dgv_A HnRNP M, heterogeneous 99.7 2.8E-16 9.5E-21 115.9 12.0 78 78-157 5-82 (92)
181 1x5t_A Splicing factor 3B subu 99.7 1.1E-16 3.7E-21 119.1 9.9 86 171-257 3-89 (96)
182 2fy1_A RNA-binding motif prote 99.7 2.7E-16 9.3E-21 120.9 12.4 87 170-258 4-90 (116)
183 2jrs_A RNA-binding protein 39; 99.7 2E-16 6.7E-21 120.0 11.4 86 168-254 21-106 (108)
184 2ywk_A Putative RNA-binding pr 99.7 8.7E-17 3E-21 119.4 9.2 81 77-160 12-92 (95)
185 2a3j_A U1 small nuclear ribonu 99.7 1.2E-16 4.2E-21 124.1 10.4 80 279-358 26-112 (127)
186 1oo0_B CG8781-PA, drosophila Y 99.7 9.9E-17 3.4E-21 122.5 9.6 83 77-161 22-104 (110)
187 3r27_A HnRNP L, heterogeneous 99.7 8.7E-17 3E-21 118.1 8.8 80 78-163 18-97 (100)
188 2kt5_A RNA and export factor-b 99.7 3.1E-16 1.1E-20 122.4 12.6 87 169-257 31-117 (124)
189 2cqd_A RNA-binding region cont 99.7 1.3E-16 4.6E-21 123.0 10.4 84 77-163 13-96 (116)
190 2la6_A RNA-binding protein FUS 99.7 2.7E-16 9.3E-21 117.5 11.8 83 169-252 9-99 (99)
191 3ex7_B RNA-binding protein 8A; 99.7 1.6E-16 5.3E-21 124.6 10.8 82 77-158 18-99 (126)
192 3ulh_A THO complex subunit 4; 99.7 1.4E-16 4.8E-21 121.0 10.2 80 77-157 25-104 (107)
193 2m2b_A RNA-binding protein 10; 99.7 8.2E-17 2.8E-21 126.9 9.2 81 77-158 19-105 (131)
194 1wg1_A KIAA1579 protein, homol 99.7 1.6E-16 5.4E-21 116.0 10.1 76 281-357 4-79 (88)
195 2rs2_A Musashi-1, RNA-binding 99.7 8.8E-17 3E-21 122.3 9.0 84 76-162 20-103 (109)
196 2d9p_A Polyadenylate-binding p 99.7 2.3E-16 7.9E-21 118.9 11.2 88 167-257 9-96 (103)
197 2cqg_A TDP-43, TAR DNA-binding 99.7 5.5E-16 1.9E-20 116.8 13.3 80 277-358 10-95 (103)
198 1p27_B RNA-binding protein 8A; 99.7 1.7E-16 5.7E-21 120.4 10.5 85 170-255 20-104 (106)
199 1p1t_A Cleavage stimulation fa 99.7 6E-17 2.1E-21 122.4 7.8 82 78-161 5-86 (104)
200 2dis_A Unnamed protein product 99.7 2.5E-16 8.6E-21 120.1 11.3 79 280-358 6-94 (109)
201 2cqi_A Nucleolysin TIAR; RNA r 99.7 4.7E-16 1.6E-20 117.2 12.6 83 77-163 11-93 (103)
202 2cqp_A RNA-binding protein 12; 99.7 8.1E-17 2.8E-21 120.3 8.2 80 78-157 12-91 (98)
203 2e5h_A Zinc finger CCHC-type a 99.7 1.6E-16 5.6E-21 117.6 9.8 84 168-252 11-94 (94)
204 3s7r_A Heterogeneous nuclear r 99.7 1.1E-16 3.8E-21 116.7 8.7 78 77-155 7-84 (87)
205 3lqv_A PRE-mRNA branch site pr 99.7 6.6E-17 2.3E-21 124.6 7.8 105 170-308 5-109 (115)
206 1x5o_A RNA binding motif, sing 99.7 8.6E-16 3E-20 118.1 14.0 84 77-161 21-110 (114)
207 2e5i_A Heterogeneous nuclear r 99.7 5.6E-16 1.9E-20 119.1 12.7 76 283-358 26-104 (124)
208 2e5g_A U6 snRNA-specific termi 99.7 4E-16 1.4E-20 115.4 11.5 77 281-358 7-84 (94)
209 2cpf_A RNA binding motif prote 99.7 1.9E-16 6.4E-21 118.3 9.7 86 171-257 3-91 (98)
210 2dgw_A Probable RNA-binding pr 99.7 3.3E-16 1.1E-20 115.2 10.9 77 279-357 7-88 (91)
211 2cq3_A RNA-binding protein 9; 99.7 6.3E-16 2.2E-20 116.5 12.7 83 77-163 11-93 (103)
212 2fc8_A NCL protein; structure 99.7 4.5E-16 1.5E-20 117.1 11.7 80 278-357 11-93 (102)
213 1wex_A Hypothetical protein (r 99.7 5.9E-16 2E-20 115.9 12.1 80 78-163 12-91 (104)
214 3ns6_A Eukaryotic translation 99.7 6E-17 2E-21 121.2 6.7 83 171-254 4-93 (100)
215 2cpx_A Hypothetical protein FL 99.7 3.8E-16 1.3E-20 120.3 11.3 82 279-360 22-109 (115)
216 1x4b_A Heterogeneous nuclear r 99.7 2.6E-16 8.8E-21 121.4 10.3 77 281-358 26-108 (116)
217 2dh8_A DAZ-associated protein 99.7 3.4E-16 1.2E-20 118.4 10.8 88 168-257 11-98 (105)
218 2jwn_A Embryonic polyadenylate 99.7 2.1E-16 7.3E-21 123.5 9.9 76 281-357 35-116 (124)
219 2cqp_A RNA-binding protein 12; 99.7 3.3E-16 1.1E-20 116.9 10.4 84 170-254 12-95 (98)
220 2cpe_A RNA-binding protein EWS 99.7 3.8E-16 1.3E-20 119.9 11.0 89 168-257 10-106 (113)
221 3zzy_A Polypyrimidine tract-bi 99.7 4.4E-16 1.5E-20 120.1 11.0 79 281-359 27-109 (130)
222 2kt5_A RNA and export factor-b 99.7 8.2E-16 2.8E-20 120.0 12.7 81 278-358 31-116 (124)
223 2cq4_A RNA binding motif prote 99.7 9.1E-17 3.1E-21 123.6 7.1 76 281-357 24-105 (114)
224 1sjr_A Polypyrimidine tract-bi 99.7 3.4E-16 1.2E-20 125.3 10.6 78 281-358 45-126 (164)
225 2diu_A KIAA0430 protein; struc 99.7 2.9E-16 1E-20 111.7 9.0 75 281-359 7-87 (96)
226 2nlw_A Eukaryotic translation 99.7 3.2E-16 1.1E-20 118.4 9.9 77 280-356 13-100 (105)
227 1wez_A HnRNP H', FTP-3, hetero 99.7 3.3E-16 1.1E-20 117.3 9.9 78 77-157 11-88 (102)
228 1wg5_A Heterogeneous nuclear r 99.7 6.1E-16 2.1E-20 116.6 11.4 78 279-357 12-95 (104)
229 1x4d_A Matrin 3; structural ge 99.7 1.6E-16 5.6E-21 118.0 7.9 80 78-163 12-92 (102)
230 2ek1_A RNA-binding protein 12; 99.7 7.3E-17 2.5E-21 119.8 6.0 78 80-157 14-91 (95)
231 2e44_A Insulin-like growth fac 99.7 5.3E-16 1.8E-20 115.3 10.7 77 280-356 13-92 (96)
232 3n9u_C Cleavage and polyadenyl 99.7 2.7E-16 9.1E-21 127.3 9.8 82 172-254 54-137 (156)
233 3pgw_S U1-70K; protein-RNA com 99.7 2.5E-17 8.5E-22 155.7 4.2 86 170-256 99-184 (437)
234 2mss_A Protein (musashi1); RNA 99.7 1.2E-16 3.9E-21 113.0 6.7 73 83-156 1-73 (75)
235 2wbr_A GW182, gawky, LD47780P; 99.7 1.4E-16 4.8E-21 112.4 7.0 69 80-154 6-74 (89)
236 1x4a_A Splicing factor, argini 99.7 9.6E-16 3.3E-20 116.8 12.3 82 77-163 18-99 (109)
237 2krb_A Eukaryotic translation 99.7 1.5E-16 5.2E-21 114.1 7.3 72 81-154 1-79 (81)
238 2m2b_A RNA-binding protein 10; 99.7 3E-16 1E-20 123.7 9.7 87 168-256 18-110 (131)
239 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.1E-16 3.6E-21 113.9 6.4 75 82-157 1-75 (77)
240 3s7r_A Heterogeneous nuclear r 99.7 3.7E-16 1.3E-20 113.8 9.5 81 169-251 7-87 (87)
241 2cq1_A PTB-like protein L; RRM 99.7 5.4E-16 1.9E-20 115.3 10.5 80 77-164 11-92 (101)
242 1wez_A HnRNP H', FTP-3, hetero 99.7 4.2E-16 1.4E-20 116.8 9.9 77 278-356 11-92 (102)
243 1s79_A Lupus LA protein; RRM, 99.7 2.2E-16 7.4E-21 118.3 8.3 81 170-253 8-88 (103)
244 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.2E-16 4.1E-21 119.6 6.9 76 279-356 16-98 (100)
245 1wi8_A EIF-4B, eukaryotic tran 99.7 3.6E-16 1.2E-20 118.0 9.5 86 169-257 11-97 (104)
246 2err_A Ataxin-2-binding protei 99.7 1.6E-16 5.3E-21 120.9 7.5 81 77-161 25-105 (109)
247 2ad9_A Polypyrimidine tract-bi 99.7 3.2E-16 1.1E-20 119.4 9.1 79 78-164 28-108 (119)
248 2cqg_A TDP-43, TAR DNA-binding 99.7 1.2E-15 4.1E-20 114.9 12.2 90 165-257 7-96 (103)
249 1x4e_A RNA binding motif, sing 99.7 1.4E-16 4.7E-21 115.6 6.8 81 171-252 3-83 (85)
250 2do0_A HnRNP M, heterogeneous 99.7 1.8E-15 6E-20 116.3 13.4 87 168-256 10-96 (114)
251 2hgn_A Heterogeneous nuclear r 99.7 4.1E-17 1.4E-21 128.7 4.1 77 279-357 43-124 (139)
252 2ek1_A RNA-binding protein 12; 99.7 2.6E-16 8.8E-21 116.8 8.3 83 170-253 12-94 (95)
253 1p1t_A Cleavage stimulation fa 99.7 4.7E-16 1.6E-20 117.5 9.8 85 172-257 7-91 (104)
254 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 7.4E-16 2.5E-20 123.2 11.4 78 276-353 57-140 (140)
255 1fjc_A Nucleolin RBD2, protein 99.7 3E-16 1E-20 116.7 8.3 80 279-358 13-93 (96)
256 1x4f_A Matrin 3; structural ge 99.7 9.7E-16 3.3E-20 115.4 11.1 80 78-163 22-102 (112)
257 1wel_A RNA-binding protein 12; 99.6 3.2E-16 1.1E-20 122.3 8.6 79 77-156 21-99 (124)
258 2bz2_A Negative elongation fac 99.6 5.1E-16 1.8E-20 120.0 9.6 78 279-358 36-113 (121)
259 2cpy_A RNA-binding protein 12; 99.6 3.6E-16 1.2E-20 120.0 8.6 79 278-357 11-95 (114)
260 3ucg_A Polyadenylate-binding p 99.6 6E-16 2.1E-20 113.3 9.4 80 173-254 6-85 (89)
261 2ki2_A SS-DNA binding protein 99.6 1.2E-16 4E-21 117.4 5.6 75 82-157 2-76 (90)
262 2hzc_A Splicing factor U2AF 65 99.6 5.2E-16 1.8E-20 113.1 9.0 71 281-352 5-86 (87)
263 2mss_A Protein (musashi1); RNA 99.6 2.8E-16 9.5E-21 111.0 7.1 75 175-251 1-75 (75)
264 2dgw_A Probable RNA-binding pr 99.6 1.3E-15 4.5E-20 111.9 11.0 82 170-255 7-88 (91)
265 4a8x_A RNA-binding protein wit 99.6 3.7E-16 1.3E-20 114.2 7.8 83 172-255 3-86 (88)
266 1wg5_A Heterogeneous nuclear r 99.6 1E-15 3.5E-20 115.4 10.4 80 78-161 12-92 (104)
267 2jwn_A Embryonic polyadenylate 99.6 4.1E-16 1.4E-20 121.8 8.5 80 79-161 34-113 (124)
268 3q2s_C Cleavage and polyadenyl 99.6 3.6E-16 1.2E-20 135.1 8.8 79 79-157 66-146 (229)
269 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 6.8E-16 2.3E-20 123.4 9.7 79 77-155 59-137 (140)
270 2db1_A Heterogeneous nuclear r 99.6 3.3E-16 1.1E-20 120.8 7.5 79 77-159 13-94 (118)
271 2hgl_A HNRPF protein, heteroge 99.6 2.3E-16 7.9E-21 124.0 6.6 79 77-159 40-121 (136)
272 1sjr_A Polypyrimidine tract-bi 99.6 2.1E-15 7.1E-20 120.8 12.2 84 78-165 43-126 (164)
273 2rs2_A Musashi-1, RNA-binding 99.6 5.6E-16 1.9E-20 117.8 8.5 86 169-256 21-106 (109)
274 2cpi_A CCR4-NOT transcription 99.6 6.6E-16 2.3E-20 117.9 9.0 86 169-255 11-102 (111)
275 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.3E-15 4.4E-20 124.0 11.1 85 170-255 36-120 (156)
276 3d2w_A TAR DNA-binding protein 99.6 1.5E-15 5.2E-20 110.7 10.2 76 279-358 8-86 (89)
277 2lmi_A GRSF-1, G-rich sequence 99.6 3.9E-16 1.3E-20 118.3 7.2 78 77-156 7-87 (107)
278 1x4c_A Splicing factor, argini 99.6 2E-15 6.7E-20 114.7 11.0 80 78-164 12-94 (108)
279 2dgx_A KIAA0430 protein; RRM d 99.6 1E-15 3.6E-20 113.5 9.2 81 171-255 7-91 (96)
280 2dnn_A RNA-binding protein 12; 99.6 4.7E-16 1.6E-20 117.4 7.4 73 78-153 13-85 (109)
281 1uaw_A Mouse-musashi-1; RNP-ty 99.6 4.1E-16 1.4E-20 110.8 6.7 76 174-251 1-76 (77)
282 1wf0_A TDP-43, TAR DNA-binding 99.6 6.6E-16 2.3E-20 112.7 7.8 76 281-358 4-80 (88)
283 1why_A Hypothetical protein ri 99.6 2E-15 6.7E-20 112.4 10.5 80 78-163 14-93 (97)
284 1iqt_A AUF1, heterogeneous nuc 99.6 2.7E-16 9.3E-21 111.1 5.4 74 83-157 1-74 (75)
285 2ki2_A SS-DNA binding protein 99.6 2.4E-16 8.3E-21 115.6 5.3 81 174-256 2-82 (90)
286 1fj7_A Nucleolin RBD1, protein 99.6 1.8E-15 6.2E-20 113.5 10.0 79 279-358 14-97 (101)
287 2dis_A Unnamed protein product 99.6 1.1E-15 3.6E-20 116.6 8.8 87 170-257 5-95 (109)
288 2hgl_A HNRPF protein, heteroge 99.6 1.1E-15 3.8E-20 120.1 9.1 83 169-254 40-125 (136)
289 2cpy_A RNA-binding protein 12; 99.6 9.1E-16 3.1E-20 117.7 8.4 84 169-255 11-95 (114)
290 2lcw_A RNA-binding protein FUS 99.4 3.1E-17 1.1E-21 126.5 0.0 78 280-357 5-96 (116)
291 2a3j_A U1 small nuclear ribonu 99.6 2.2E-15 7.6E-20 117.0 10.4 81 78-163 26-110 (127)
292 3zzy_A Polypyrimidine tract-bi 99.6 2.7E-15 9.2E-20 115.7 10.8 84 78-166 25-109 (130)
293 2hgn_A Heterogeneous nuclear r 99.6 3E-16 1E-20 123.7 5.5 124 124-256 2-125 (139)
294 3u1l_A PRE-mRNA-splicing facto 99.6 1E-15 3.5E-20 131.2 9.0 81 279-359 131-232 (240)
295 1x5o_A RNA binding motif, sing 99.6 3.4E-15 1.2E-19 114.7 11.1 84 168-253 20-111 (114)
296 1x4b_A Heterogeneous nuclear r 99.6 1.7E-15 5.8E-20 116.8 9.3 85 171-257 25-109 (116)
297 2e5i_A Heterogeneous nuclear r 99.6 1.4E-14 4.9E-19 111.2 14.3 80 79-164 23-103 (124)
298 2db1_A Heterogeneous nuclear r 99.6 1.9E-15 6.4E-20 116.6 9.2 83 170-255 14-99 (118)
299 2nlw_A Eukaryotic translation 99.6 1.6E-15 5.6E-20 114.5 8.7 84 169-255 11-101 (105)
300 2cpj_A Non-POU domain-containi 99.6 2.9E-15 9.8E-20 111.9 9.9 77 77-161 11-87 (99)
301 1wel_A RNA-binding protein 12; 99.6 1E-15 3.5E-20 119.4 7.7 84 170-255 22-105 (124)
302 2fc8_A NCL protein; structure 99.6 3.8E-15 1.3E-19 112.0 10.4 87 167-257 9-95 (102)
303 2cpx_A Hypothetical protein FL 99.6 1.5E-15 5E-20 117.0 8.3 87 170-257 22-108 (115)
304 2xnq_A Nuclear polyadenylated 99.6 2.7E-15 9.4E-20 111.3 9.4 75 77-161 18-93 (97)
305 1fj7_A Nucleolin RBD1, protein 99.6 5.1E-16 1.7E-20 116.5 5.5 84 170-256 14-97 (101)
306 2krb_A Eukaryotic translation 99.6 1.1E-15 3.9E-20 109.5 6.8 74 173-249 1-81 (81)
307 2dnn_A RNA-binding protein 12; 99.6 1.6E-15 5.5E-20 114.5 7.6 79 172-254 15-93 (109)
308 2hgm_A HNRPF protein, heteroge 99.6 1.9E-15 6.5E-20 116.8 8.0 78 77-157 38-117 (126)
309 2ytc_A PRE-mRNA-splicing facto 99.6 3.9E-15 1.3E-19 107.8 9.3 75 77-159 8-83 (85)
310 2j8a_A Histone-lysine N-methyl 99.6 7.7E-16 2.6E-20 116.0 5.5 77 82-158 3-93 (136)
311 2dha_A FLJ20171 protein; RRM d 99.6 1.2E-15 4.2E-20 117.6 6.7 72 78-151 20-95 (123)
312 2dnq_A RNA-binding protein 4B; 99.6 8.8E-15 3E-19 107.2 11.0 79 170-257 5-83 (90)
313 3egn_A RNA-binding protein 40; 99.6 1.9E-15 6.6E-20 121.1 7.9 80 279-358 42-132 (143)
314 2fc9_A NCL protein; structure 99.6 3.4E-15 1.2E-19 112.0 8.8 83 169-256 11-93 (101)
315 2la4_A Nuclear and cytoplasmic 99.6 5.2E-15 1.8E-19 111.0 9.8 77 170-253 24-100 (101)
316 2lmi_A GRSF-1, G-rich sequence 99.6 1.7E-15 5.9E-20 114.7 7.1 84 169-255 7-93 (107)
317 2e5j_A Methenyltetrahydrofolat 99.6 1.1E-14 3.9E-19 108.2 11.3 81 169-255 15-95 (97)
318 2f3j_A RNA and export factor b 99.6 4.1E-15 1.4E-19 123.1 9.7 80 77-157 84-163 (177)
319 1x4g_A Nucleolysin TIAR; struc 99.6 7.9E-15 2.7E-19 111.6 10.6 79 78-164 22-100 (109)
320 1iqt_A AUF1, heterogeneous nuc 99.6 1.2E-15 4E-20 107.8 5.4 75 175-251 1-75 (75)
321 2kvi_A Nuclear polyadenylated 99.6 8E-15 2.8E-19 108.7 9.9 76 77-160 6-82 (96)
322 2xs2_A Deleted in azoospermia- 99.6 1.6E-15 5.6E-20 114.0 5.9 76 78-156 6-81 (102)
323 2dha_A FLJ20171 protein; RRM d 99.6 4.1E-15 1.4E-19 114.7 8.1 81 171-254 21-105 (123)
324 2jvr_A Nucleolar protein 3; RN 99.6 4.2E-15 1.4E-19 112.4 8.0 79 171-254 26-105 (111)
325 1nu4_A U1A RNA binding domain; 99.6 1.9E-15 6.5E-20 112.5 5.8 82 77-163 4-89 (97)
326 2j8a_A Histone-lysine N-methyl 99.6 4.7E-15 1.6E-19 111.8 7.8 80 174-254 3-96 (136)
327 2dgu_A Heterogeneous nuclear r 99.6 1.8E-14 6E-19 108.4 11.0 80 170-258 8-87 (103)
328 2jvo_A Nucleolar protein 3; nu 99.6 1.2E-14 3.9E-19 110.2 10.0 78 169-255 27-104 (108)
329 2cq2_A Hypothetical protein LO 99.6 6.6E-15 2.3E-19 110.9 8.4 77 78-160 22-103 (114)
330 2dnp_A RNA-binding protein 14; 99.6 1.1E-14 3.9E-19 106.6 9.4 79 169-256 5-83 (90)
331 3beg_B Splicing factor, argini 99.6 1E-14 3.5E-19 111.9 9.5 67 79-152 14-80 (115)
332 1whx_A Hypothetical protein ri 99.6 6.2E-15 2.1E-19 112.3 7.8 76 78-161 7-82 (111)
333 2xs2_A Deleted in azoospermia- 99.6 3.2E-15 1.1E-19 112.4 5.9 76 281-358 8-88 (102)
334 1fjc_A Nucleolin RBD2, protein 99.6 5.6E-15 1.9E-19 109.7 7.2 83 168-256 11-93 (96)
335 2pe8_A Splicing factor 45; RRM 99.6 2.8E-14 9.6E-19 106.9 10.6 76 280-355 6-93 (105)
336 2dgt_A RNA-binding protein 30; 99.6 2.8E-14 9.4E-19 105.0 10.3 80 169-257 6-85 (92)
337 2lcw_A RNA-binding protein FUS 99.3 3.7E-16 1.3E-20 120.5 0.0 87 170-257 4-98 (116)
338 2dnl_A Cytoplasmic polyadenyla 99.5 8.9E-15 3E-19 112.2 7.6 69 78-147 5-79 (114)
339 3d2w_A TAR DNA-binding protein 99.5 8.1E-15 2.8E-19 106.8 6.8 77 78-163 8-84 (89)
340 2e5g_A U6 snRNA-specific termi 99.5 4.1E-14 1.4E-18 104.5 10.7 80 170-256 5-84 (94)
341 2cpd_A Apobec-1 stimulating pr 99.5 4E-14 1.4E-18 105.7 10.8 79 169-256 11-91 (99)
342 2hgm_A HNRPF protein, heteroge 99.5 6.8E-15 2.3E-19 113.7 6.6 81 170-254 39-121 (126)
343 2dit_A HIV TAT specific factor 99.5 6.7E-14 2.3E-18 106.8 12.1 81 278-358 11-104 (112)
344 2f3j_A RNA and export factor b 99.5 1.7E-14 5.9E-19 119.3 9.5 85 170-256 85-169 (177)
345 2diu_A KIAA0430 protein; struc 99.5 6.2E-14 2.1E-18 99.8 10.5 77 171-258 6-88 (96)
346 1wf1_A RNA-binding protein RAL 99.5 3.7E-14 1.3E-18 108.0 10.2 78 170-256 24-102 (110)
347 2cqh_A IGF-II mRNA-binding pro 99.5 2.3E-14 7.9E-19 105.6 8.8 79 170-256 5-85 (93)
348 2hzc_A Splicing factor U2AF 65 99.5 1.7E-14 5.8E-19 105.0 7.2 72 78-156 3-85 (87)
349 1wg1_A KIAA1579 protein, homol 99.5 2.5E-14 8.7E-19 104.1 8.1 78 171-256 3-80 (88)
350 2e44_A Insulin-like growth fac 99.5 3.8E-14 1.3E-18 105.1 9.0 81 170-255 12-93 (96)
351 1x5p_A Negative elongation fac 99.5 1.3E-13 4.4E-18 102.4 11.6 81 168-257 10-90 (97)
352 3egn_A RNA-binding protein 40; 99.5 1.9E-14 6.6E-19 115.2 7.1 86 170-256 42-132 (143)
353 2voo_A Lupus LA protein; RNA-b 99.5 1.7E-13 5.8E-18 115.1 13.0 117 225-355 63-186 (193)
354 1wf0_A TDP-43, TAR DNA-binding 99.5 6E-14 2.1E-18 102.2 6.5 77 79-164 3-79 (88)
355 2pe8_A Splicing factor 45; RRM 99.5 2.4E-13 8.4E-18 101.8 9.9 83 170-253 5-93 (105)
356 3v4m_A Splicing factor U2AF 65 99.5 2.6E-13 8.9E-18 101.7 9.9 76 280-355 3-96 (105)
357 2d9o_A DNAJ (HSP40) homolog, s 99.5 1E-12 3.5E-17 97.1 12.7 65 292-358 27-92 (100)
358 2dnl_A Cytoplasmic polyadenyla 99.5 1.2E-13 4E-18 105.9 7.9 79 170-252 5-86 (114)
359 2bz2_A Negative elongation fac 99.5 3.3E-13 1.1E-17 104.2 10.1 79 169-256 35-113 (121)
360 2voo_A Lupus LA protein; RNA-b 99.5 2.6E-13 8.9E-18 113.9 10.2 119 132-255 63-188 (193)
361 3u1l_A PRE-mRNA-splicing facto 99.4 3.8E-13 1.3E-17 115.3 8.5 81 77-163 130-229 (240)
362 3tht_A Alkylated DNA repair pr 99.4 6.3E-13 2.2E-17 120.2 10.1 76 279-354 15-97 (345)
363 3ue2_A Poly(U)-binding-splicin 99.4 8.6E-13 3E-17 100.7 9.2 75 281-355 19-108 (118)
364 3s6e_A RNA-binding protein 39; 99.4 2.4E-12 8.2E-17 97.5 9.9 75 281-355 6-92 (114)
365 1jmt_A Splicing factor U2AF 35 99.4 2.9E-13 9.9E-18 101.3 4.2 67 287-353 20-103 (104)
366 3v4m_A Splicing factor U2AF 65 99.4 1.1E-12 3.8E-17 98.3 7.2 79 79-157 3-93 (105)
367 2dit_A HIV TAT specific factor 99.4 7.2E-12 2.5E-16 95.5 11.2 83 169-256 11-104 (112)
368 1owx_A Lupus LA protein, SS-B, 99.3 6.7E-12 2.3E-16 95.0 10.5 77 277-353 13-93 (121)
369 1jmt_A Splicing factor U2AF 35 99.3 9E-13 3.1E-17 98.6 3.6 70 86-156 20-101 (104)
370 3ue2_A Poly(U)-binding-splicin 99.3 5.4E-12 1.9E-16 96.3 7.9 81 172-253 19-108 (118)
371 2dnr_A Synaptojanin-1; RRM dom 99.3 2.9E-11 9.9E-16 85.3 9.4 73 280-355 5-85 (91)
372 3tht_A Alkylated DNA repair pr 99.3 7.5E-12 2.6E-16 113.2 7.7 78 77-160 14-96 (345)
373 2d9o_A DNAJ (HSP40) homolog, s 99.2 1.3E-10 4.4E-15 85.7 12.2 74 81-163 10-90 (100)
374 1ufw_A Synaptojanin 2; RNP dom 99.1 1.5E-10 5E-15 82.1 6.6 75 277-354 10-93 (95)
375 3s6e_A RNA-binding protein 39; 99.1 2.8E-10 9.4E-15 86.2 7.8 78 171-253 5-92 (114)
376 2l9w_A U4/U6 snRNA-associated- 99.0 2.7E-09 9.3E-14 76.8 8.9 72 281-352 20-96 (117)
377 1owx_A Lupus LA protein, SS-B, 99.0 2.1E-09 7.1E-14 81.3 8.1 67 78-150 15-85 (121)
378 2dnr_A Synaptojanin-1; RRM dom 98.8 5.5E-09 1.9E-13 73.7 5.5 70 80-158 6-83 (91)
379 3dxb_A Thioredoxin N-terminall 98.8 1.2E-08 4E-13 87.9 7.4 62 294-355 141-212 (222)
380 3dxb_A Thioredoxin N-terminall 98.7 8E-08 2.7E-12 82.6 10.5 69 184-253 140-212 (222)
381 1ufw_A Synaptojanin 2; RNP dom 98.6 5.4E-08 1.9E-12 68.9 4.9 73 170-252 12-93 (95)
382 1wey_A Calcipressin 1; structu 98.3 2.6E-06 8.9E-11 61.4 7.8 74 282-355 5-83 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.3 1.7E-06 5.9E-11 62.4 6.3 67 79-151 19-90 (117)
384 2dhx_A Poly (ADP-ribose) polym 98.2 3.1E-05 1.1E-09 55.5 11.1 72 280-354 6-82 (104)
385 2dhx_A Poly (ADP-ribose) polym 97.9 9.7E-05 3.3E-09 53.0 9.7 90 171-295 6-99 (104)
386 1wwh_A Nucleoporin 35, nucleop 97.9 5.3E-05 1.8E-09 56.3 8.3 73 280-354 22-95 (119)
387 1uw4_A UPF3X; nonsense mediate 97.7 0.00011 3.7E-09 52.2 7.1 69 82-150 2-72 (91)
388 1uw4_A UPF3X; nonsense mediate 97.5 0.00067 2.3E-08 48.1 8.7 72 283-354 2-86 (91)
389 1whv_A Poly(A)-specific ribonu 97.3 0.0016 5.5E-08 46.1 8.6 56 281-339 15-70 (100)
390 3p3d_A Nucleoporin 53; structu 97.3 0.0002 6.7E-09 54.0 4.0 70 283-354 8-97 (132)
391 1wey_A Calcipressin 1; structu 97.2 0.00087 3E-08 48.3 6.0 73 81-161 5-82 (104)
392 1whv_A Poly(A)-specific ribonu 97.2 0.0015 5E-08 46.3 7.0 55 81-144 16-70 (100)
393 2l08_A Regulator of nonsense t 97.0 0.00066 2.2E-08 48.4 3.9 71 80-150 8-80 (97)
394 3ctr_A Poly(A)-specific ribonu 96.9 0.002 6.7E-08 45.8 5.8 54 283-339 7-60 (101)
395 3ctr_A Poly(A)-specific ribonu 96.8 0.0021 7.1E-08 45.7 5.3 53 83-144 8-60 (101)
396 2l08_A Regulator of nonsense t 96.7 0.0037 1.3E-07 44.6 6.2 74 281-354 8-94 (97)
397 1wwh_A Nucleoporin 35, nucleop 96.5 0.0091 3.1E-07 44.3 7.4 75 170-253 21-96 (119)
398 3pq1_A Poly(A) RNA polymerase; 96.5 0.0013 4.4E-08 61.6 3.6 54 283-337 54-108 (464)
399 3pq1_A Poly(A) RNA polymerase; 96.2 0.0024 8.3E-08 59.8 3.1 56 80-141 52-107 (464)
400 3p3d_A Nucleoporin 53; structu 91.2 0.29 9.8E-06 36.9 4.7 77 174-253 8-98 (132)
401 3d45_A Poly(A)-specific ribonu 87.3 1.5 5.2E-05 41.8 7.8 56 81-145 440-495 (507)
402 3d45_A Poly(A)-specific ribonu 86.0 2.6 9E-05 40.2 8.7 55 282-339 440-494 (507)
403 4eyt_A Telomerase associated p 80.5 11 0.00039 25.7 8.3 56 281-338 11-66 (129)
404 4eyt_A Telomerase associated p 67.6 26 0.0009 23.9 7.3 58 78-143 9-66 (129)
405 3fry_A Probable copper-exporti 60.8 21 0.00073 23.0 5.6 54 283-337 7-60 (73)
406 2g0c_A ATP-dependent RNA helic 60.2 12 0.00041 24.9 4.2 59 293-354 12-75 (76)
407 2v94_A RPS24, 30S ribosomal pr 46.2 31 0.001 24.9 4.5 49 183-232 37-89 (107)
408 4a4j_A Pacszia, cation-transpo 45.9 52 0.0018 20.5 6.0 54 284-337 5-61 (69)
409 4e8u_A Putative uncharacterize 41.5 53 0.0018 25.9 5.6 55 83-140 14-80 (172)
410 3dxs_X Copper-transporting ATP 41.0 67 0.0023 20.3 6.5 56 283-338 4-63 (74)
411 1ywx_A 30S ribosomal protein S 40.5 29 0.00098 24.8 3.6 48 183-231 28-79 (102)
412 2xzm_P RPS24E; ribosome, trans 36.6 59 0.002 24.8 5.0 49 183-232 31-83 (149)
413 2cu1_A Mitogen-activated prote 34.4 1.2E+02 0.0041 21.3 6.8 68 286-356 20-88 (103)
414 3u5c_Y RP50, 40S ribosomal pro 34.0 58 0.002 24.5 4.5 49 183-232 33-85 (135)
415 3lpe_A Putative transcription 33.9 80 0.0027 21.8 5.1 32 108-144 40-71 (92)
416 4e8u_A Putative uncharacterize 30.6 1.5E+02 0.0051 23.3 6.5 53 284-336 14-81 (172)
417 1yg0_A COP associated protein; 29.2 95 0.0033 18.6 6.3 53 285-337 5-60 (66)
418 2kt2_A Mercuric reductase; nme 25.3 1.2E+02 0.0041 18.4 6.1 54 284-337 3-59 (69)
419 2i9x_A Putative septation prot 25.2 1E+02 0.0035 21.2 4.2 26 107-132 5-30 (87)
420 2eqj_A Metal-response element- 24.9 63 0.0022 20.8 2.8 20 307-328 32-51 (66)
421 2g9o_A Copper-transporting ATP 24.6 1.6E+02 0.0054 19.6 5.9 55 284-338 6-64 (90)
422 2xmw_A PACS-N, cation-transpor 24.5 1.2E+02 0.0043 18.3 7.1 54 284-337 6-62 (71)
423 2e5p_A Protein PHF1, PHD finge 24.3 68 0.0023 20.6 2.8 20 307-328 28-47 (68)
424 1aw0_A Menkes copper-transport 22.8 1.4E+02 0.0047 18.2 5.1 55 284-338 6-64 (72)
425 3d53_A Inorganic pyrophosphata 22.4 83 0.0028 24.8 3.8 40 295-339 131-170 (173)
426 3j21_T 50S ribosomal protein L 22.4 1.7E+02 0.0058 20.0 4.9 54 285-338 25-83 (86)
427 2l3m_A Copper-ION-binding prot 22.0 1.4E+02 0.0049 18.1 6.8 55 283-337 7-65 (71)
428 1nxk_A MAP kinase-activated pr 21.9 22 0.00076 32.4 0.5 10 185-194 158-167 (400)
429 2ia9_A Putative septation prot 21.8 1.2E+02 0.0043 21.4 4.2 26 107-132 5-30 (100)
430 1cpz_A Protein (COPZ); copper 21.6 1.4E+02 0.0048 17.9 7.8 44 284-327 3-46 (68)
431 2pk2_A Cyclin-T1, protein TAT; 21.4 20 0.00069 32.3 0.0 14 292-305 227-240 (358)
432 1q8l_A Copper-transporting ATP 21.3 1.7E+02 0.006 18.9 7.8 55 283-337 11-69 (84)
433 2e7g_A Putative ribosome-bindi 21.2 2.2E+02 0.0077 21.0 5.9 33 306-338 43-78 (129)
434 4bby_A Alkyldihydroxyacetoneph 21.1 1.2E+02 0.004 29.9 5.5 55 89-144 351-409 (658)
435 2i9z_A Putative septation prot 20.9 1.3E+02 0.0046 21.4 4.2 26 107-132 5-30 (105)
436 1osd_A MERP, hypothetical prot 20.7 1.5E+02 0.0053 18.0 7.2 54 284-337 6-63 (72)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=8.3e-45 Score=328.99 Aligned_cols=241 Identities=18% Similarity=0.275 Sum_probs=216.6
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeee
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 158 (413)
..+++|||+|||.++|+++|+++|+.|| |.+|++ ++++|||||+|.+.++|.+|++.||+..+.++.+.+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~-- 90 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQ-- 90 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEE--
Confidence 3578999999999999999999999999 999988 3456999999999999999999999999976555444
Q ss_pred eccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCC
Q 015091 159 WASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238 (413)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~ 238 (413)
++ ...++|||+|||.++++++|+++| +.||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|++
T Consensus 91 ~~----------~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~ 159 (284)
T 3smz_A 91 LQ----------PTDALLCVANLPPSLTQQQFEELV-RPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG 159 (284)
T ss_dssp EC----------CCSCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ec----------CCCCEEEEcCCCCcCCHHHHHHHH-HhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 32 345799999999999999999999 8999999999999998999999999999999999999999999
Q ss_pred ccccCcceEeccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCC-CHHHHHHHHhcCCCeEEEEeeCC
Q 015091 239 VFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV-TDEHLRELFSQYGQLVHVKIPAG 317 (413)
Q Consensus 239 ~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~-~~~~l~~~f~~~G~i~~v~~~~~ 317 (413)
..+.|+.|.|.++...... ......++|||+|||.++ ++++|+++|+.||.|.++.+..+
T Consensus 160 ~~~~g~~i~v~~a~~~~~~-------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~ 220 (284)
T 3smz_A 160 KPLGPRTLYVHWTDAGQLT-------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACG 220 (284)
T ss_dssp CEETTEECEEEECCGGGCC-------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEEC
T ss_pred CEeCCcEEEEEECCCCCCC-------------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEEC
Confidence 9999999999998765322 123456899999999995 99999999999999999998765
Q ss_pred -----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCCC
Q 015091 318 -----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 358 (413)
Q Consensus 318 -----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 358 (413)
+++|||+|.+.++|.+|+..|||..|+|+.|+|.|++++..
T Consensus 221 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 221 QDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp SSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 78999999999999999999999999999999999987654
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=6.1e-44 Score=324.64 Aligned_cols=247 Identities=17% Similarity=0.321 Sum_probs=206.9
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcce
Q 015091 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (413)
Q Consensus 76 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~ 155 (413)
....+.++|||+|||.++|+++|+++|+.||.|.+|++++++. .++|||||+|.+.++|.+|++ +++..+.++.+.
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~- 111 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK--KNFRFARIEFARYDGALAAIT-KTHKVVGQNEII- 111 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT--SSSEEEEEEESSHHHHHHHHT-TTTCEETTEECE-
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--CCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEE-
Confidence 3567789999999999999999999999999999999999873 257999999999999999994 899999765544
Q ss_pred eeeeccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCC-CcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHH
Q 015091 156 RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP-STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234 (413)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g-~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~ 234 (413)
+.++ ..++|||+|||.++++++|+++| +.|| .|..+.++.+.. +.++|||||+|.+.++|.+|++
T Consensus 112 -v~~~-----------~~~~l~v~nlp~~~t~~~l~~~f-~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~ 177 (292)
T 2ghp_A 112 -VSHL-----------TECTLWMTNFPPSYTQRNIRDLL-QDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVE 177 (292)
T ss_dssp -EEEC-----------CSCEEEEECCCTTCCHHHHHHHH-HHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHH
T ss_pred -EEEC-----------CCCEEEEECCCCCCCHHHHHHHH-HHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHH
Confidence 4433 46799999999999999999999 8999 999999988764 7889999999999999999999
Q ss_pred hhCCccccCcceEeccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCC-CCHHHHHHHHhcCCCeEEEE
Q 015091 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSI-VTDEHLRELFSQYGQLVHVK 313 (413)
Q Consensus 235 ~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~G~i~~v~ 313 (413)
.|++..+.|+.|.|.++......... .......++|||+|||.. +++++|+++|+.||.|.+|.
T Consensus 178 ~l~g~~~~g~~l~v~~a~~~~~~~~~---------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~ 242 (292)
T 2ghp_A 178 KLNGLKIEGYTLVTKVSNPLEKSKRT---------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKIN 242 (292)
T ss_dssp HHTTCEETTEECEEEECCCC------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEE
T ss_pred HhCCCEeCCcEEEEEECCCCcccccc---------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEE
Confidence 99999999999999998765432211 123446789999999999 99999999999999999999
Q ss_pred eeCC-------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCC
Q 015091 314 IPAG-------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 356 (413)
Q Consensus 314 ~~~~-------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 356 (413)
+.++ +++|||+|.+.++|.+|+ .|||..|+|+.|+|.|++++
T Consensus 243 i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 243 IPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp CCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred EEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9653 689999999999999999 99999999999999999864
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.8e-34 Score=249.24 Aligned_cols=167 Identities=29% Similarity=0.479 Sum_probs=150.3
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
..+.++|||+|||+++++++|+++| +.||.|.+|+++++..+++++|||||+|.+.++|.+|++.+++..+.|+.|++.
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKF-SPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHH-HhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 3466899999999999999999999 899999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC----CcEEEEEe
Q 015091 250 PATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG----KRCGFVQF 325 (413)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~----~~~afV~f 325 (413)
++........ ...++|||+||+.++++++|+++|+.||.|.++.|.++ +++|||+|
T Consensus 91 ~~~~~~~~~~--------------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f 150 (213)
T 4f02_A 91 WSQRDPSLRK--------------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHF 150 (213)
T ss_dssp ECCCCTHHHH--------------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEE
T ss_pred cccccccccc--------------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEe
Confidence 8765433211 13468999999999999999999999999999999754 78999999
Q ss_pred cCHHHHHHHHHHhcCceeCCeeEEEEeccCCC
Q 015091 326 ADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 357 (413)
Q Consensus 326 ~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 357 (413)
.+.++|.+|++.|||..|+|+.|+|+|++++.
T Consensus 151 ~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 151 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 99999999999999999999999999998653
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.5e-33 Score=242.02 Aligned_cols=171 Identities=28% Similarity=0.493 Sum_probs=149.4
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeee
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 158 (413)
.+.++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|++.+++..+.++. +++.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~--i~~~ 90 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP--VRIM 90 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE--CEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcc--cccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999996654 4444
Q ss_pred eccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCC
Q 015091 159 WASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238 (413)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~ 238 (413)
++..... ......++|||+||+.++++++|+++| +.||.|..++++.+. +.++|||||+|.+.++|.+|++.||+
T Consensus 91 ~~~~~~~--~~~~~~~~l~v~nl~~~~t~~~l~~~F-~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 91 WSQRDPS--LRKSGVGNIFIKNLDKSIDNKALYDTF-SAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp ECCCCTH--HHHHCTTEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ccccccc--ccccccccceECCcccccHHHHHHHHH-hhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 4432211 122345689999999999999999999 899999999999885 44799999999999999999999999
Q ss_pred ccccCcceEeccCCCCCc
Q 015091 239 VFCSTRPMRIGPATNKKT 256 (413)
Q Consensus 239 ~~~~g~~i~v~~~~~~~~ 256 (413)
..|+|+.|.|.++..+..
T Consensus 166 ~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 166 MLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp CEETTEECEEEECCCHHH
T ss_pred CEECCEEEEEEEcCCCcc
Confidence 999999999999987543
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.5e-32 Score=234.68 Aligned_cols=180 Identities=18% Similarity=0.363 Sum_probs=149.2
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcce
Q 015091 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (413)
Q Consensus 76 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~ 155 (413)
..+...++|||+|||.++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++. ++..+.++.+.+
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3567789999999999999999999999999999999999998999999999999999999999976 888886655555
Q ss_pred eeeeccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHh
Q 015091 156 RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (413)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~ 235 (413)
..................++|||+||+.++++++|+++| +.||.|..+.++.+..++.++|||||+|.+.++|.+|++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 87 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF-EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp EECCC-----------CCSEEEEECCTTTCCHHHHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred ecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHH-hcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 443332222222334456899999999999999999999 8999999999999988999999999999999999999965
Q ss_pred hCCccccCcceEeccCCCCCccC
Q 015091 236 MNGVFCSTRPMRIGPATNKKTVS 258 (413)
Q Consensus 236 l~~~~~~g~~i~v~~~~~~~~~~ 258 (413)
++..++|+.|.|.++..+....
T Consensus 166 -~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 166 -KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp -SCCEETTEECEEEECC------
T ss_pred -CCcEECCEEEEEEecCChhHhc
Confidence 7999999999999998876554
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=7.3e-32 Score=230.32 Aligned_cols=172 Identities=22% Similarity=0.376 Sum_probs=146.1
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEe
Q 015091 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 248 (413)
+....++|||+|||.++++++|+++| +.||.|.++.++.+..++.++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHF-EQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 45567899999999999999999999 8999999999999998999999999999999999999955 889999999999
Q ss_pred ccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEE
Q 015091 249 GPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGF 322 (413)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~af 322 (413)
.++........ .......++|||+|||.++++++|+++|+.||.|.++.+..+ +|+||
T Consensus 87 ~~~~~~~~~~~----------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~af 150 (196)
T 1l3k_A 87 KRAVSREDSQR----------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150 (196)
T ss_dssp EECCC---------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEE
T ss_pred ecccCcccccc----------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEE
Confidence 99876543211 122345689999999999999999999999999999999754 67999
Q ss_pred EEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCCCC
Q 015091 323 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 359 (413)
Q Consensus 323 V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 359 (413)
|+|.+.++|.+|+.. ++..|+|+.|.|.|+.++...
T Consensus 151 V~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 151 VTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp EEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred EEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 999999999999996 799999999999999876543
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=7.6e-32 Score=224.31 Aligned_cols=165 Identities=27% Similarity=0.506 Sum_probs=150.0
Q ss_pred CcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeee
Q 015091 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (413)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 159 (413)
+.++|||+|||.++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.|++..+.++ .+++.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~--~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNK--RLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCc--EEEEEe
Confidence 468999999999999999999999999999999999988999999999999999999999999999999665 455555
Q ss_pred ccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCc
Q 015091 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (413)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~ 239 (413)
+... ......++|||+||+.++++++|+++| +.||.|..+.++.+..++.++|+|||+|.+.++|.+|++.|++.
T Consensus 80 ~~~~----~~~~~~~~l~v~nl~~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 154 (168)
T 1b7f_A 80 ARPG----GESIKDTNLYVTNLPRTITDDQLDTIF-GKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV 154 (168)
T ss_dssp CCCC----SSTTTTCEEEEESCCTTCCHHHHHHHH-TSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cCCC----cccCCCCCEEEeCCCCCCCHHHHHHhh-hcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 5433 234567899999999999999999999 89999999999999889999999999999999999999999999
Q ss_pred cccC--cceEeccC
Q 015091 240 FCST--RPMRIGPA 251 (413)
Q Consensus 240 ~~~g--~~i~v~~~ 251 (413)
.+.| +.|+|.+|
T Consensus 155 ~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 155 IPEGGSQPLSVRLA 168 (168)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred EecCCCeEEEEEeC
Confidence 9987 99999875
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1e-31 Score=223.23 Aligned_cols=164 Identities=27% Similarity=0.483 Sum_probs=147.7
Q ss_pred cceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeeec
Q 015091 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (413)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~ 160 (413)
+++|||+|||.++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.|++..+.++.+ ++.++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l--~v~~~ 79 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI--KVSYA 79 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC--EEEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceE--EEEec
Confidence 6899999999999999999999999999999999999899999999999999999999999999999976544 44444
Q ss_pred cCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCcc
Q 015091 161 SFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (413)
Q Consensus 161 ~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~ 240 (413)
... ......++|||+||+.++++++|+++| +.||.|..+.++.+..++.++|||||+|.+.++|.+|++.|++..
T Consensus 80 ~~~----~~~~~~~~l~v~nl~~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 154 (167)
T 1fxl_A 80 RPS----SASIRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 154 (167)
T ss_dssp CCC----CGGGTTCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCC----cccCCCCcEEECCCCCcCCHHHHHHHH-HhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCc
Confidence 432 223456789999999999999999999 899999999999998899999999999999999999999999999
Q ss_pred ccCcc--eEeccC
Q 015091 241 CSTRP--MRIGPA 251 (413)
Q Consensus 241 ~~g~~--i~v~~~ 251 (413)
+.|+. |+|.+|
T Consensus 155 ~~g~~~~i~v~~A 167 (167)
T 1fxl_A 155 PSGATEPITVKFA 167 (167)
T ss_dssp CTTCSSCCEEEEC
T ss_pred cCCCccceEEEeC
Confidence 99976 777664
No 9
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-32 Score=223.34 Aligned_cols=165 Identities=32% Similarity=0.576 Sum_probs=148.4
Q ss_pred ceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeeecc
Q 015091 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (413)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~ 161 (413)
|+|||+|||.++|+++|+++|+.||.|.+|++++++ +++++|||||+|.+.++|.+|++.+++..+.++. +++.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~--i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNI--VKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEE--CEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCe--eEEEEcC
Confidence 689999999999999999999999999999999997 5889999999999999999999999999996654 4444443
Q ss_pred CCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccc
Q 015091 162 FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (413)
Q Consensus 162 ~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~ 241 (413)
... .......++|||+||+.++++++|+++| +.||.|..+.++.+..++.++|+|||+|.+.++|.+|++.|++..+
T Consensus 78 ~~~--~~~~~~~~~l~v~nl~~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 154 (166)
T 3md3_A 78 QSQ--QSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL 154 (166)
T ss_dssp CCC--CCCCTTCEEEEEESCCTTCCHHHHHHHH-TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCC--CCCCCCCceEEECCCCCCCCHHHHHHHH-hccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 322 2345567899999999999999999999 8999999999999988999999999999999999999999999999
Q ss_pred cCcceEeccCC
Q 015091 242 STRPMRIGPAT 252 (413)
Q Consensus 242 ~g~~i~v~~~~ 252 (413)
+|+.|+|.++.
T Consensus 155 ~g~~i~v~~a~ 165 (166)
T 3md3_A 155 NGRPLRINWAA 165 (166)
T ss_dssp TTEECEEEESC
T ss_pred CCcEEEEEecC
Confidence 99999999875
No 10
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.9e-31 Score=221.40 Aligned_cols=159 Identities=24% Similarity=0.480 Sum_probs=145.6
Q ss_pred ceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCC
Q 015091 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (413)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 253 (413)
++|||+|||.++++++|+++| +.||.|.++.++.+. +++++|||||+|.+.++|.+|++.+++..+.|+.|.|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f-~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYF-QVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHH-GGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHH-HhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 589999999999999999999 899999999999886 577999999999999999999999999999999999999866
Q ss_pred CCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecC
Q 015091 254 KKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFAD 327 (413)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~ 327 (413)
.... .....++|||+|||..+++++|+++|+.||.|.++.+..+ +|+|||+|.+
T Consensus 79 ~~~~--------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~ 138 (166)
T 3md3_A 79 SQQS--------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTS 138 (166)
T ss_dssp CCCC--------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESC
T ss_pred CCCC--------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCC
Confidence 5421 2335689999999999999999999999999999999754 6799999999
Q ss_pred HHHHHHHHHHhcCceeCCeeEEEEecc
Q 015091 328 RSCAEEALRMLNGTQLGGQNIRLSWGR 354 (413)
Q Consensus 328 ~~~a~~a~~~l~~~~~~g~~l~v~~~~ 354 (413)
.++|.+|+..|||..|+|+.|+|+|++
T Consensus 139 ~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 139 QDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred HHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 999999999999999999999999986
No 11
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.98 E-value=8.2e-32 Score=233.67 Aligned_cols=176 Identities=20% Similarity=0.357 Sum_probs=153.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
..+.++|||+|||.++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.|++..+.++.+.+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v-- 102 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV-- 102 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE--
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE--
Confidence 345789999999999999999999999999999999999889999999999999999999999999999997765544
Q ss_pred eeccCCCCCC-------CCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHH
Q 015091 158 NWASFGAGEK-------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQL 230 (413)
Q Consensus 158 ~~~~~~~~~~-------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~ 230 (413)
.++....... ......++|||+||+.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 181 (216)
T 2qfj_A 103 GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVF-EAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQ 181 (216)
T ss_dssp ECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHH-TTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred ecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHH-hccCCeeEEEEEecCCCCCcCceEEEEecCHHHHH
Confidence 4433221110 123456899999999999999999999 89999999999999889999999999999999999
Q ss_pred HHHHhhCCccccCcceEeccCCCCCc
Q 015091 231 RAMTEMNGVFCSTRPMRIGPATNKKT 256 (413)
Q Consensus 231 ~a~~~l~~~~~~g~~i~v~~~~~~~~ 256 (413)
+|++.|++..|+|+.|+|.++.....
T Consensus 182 ~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 182 DAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred HHHHHccCCEeCCcEEEEEEecCCCC
Confidence 99999999999999999999987643
No 12
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.98 E-value=2.3e-31 Score=221.41 Aligned_cols=159 Identities=27% Similarity=0.467 Sum_probs=147.2
Q ss_pred CCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccC
Q 015091 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (413)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 251 (413)
++++|||+|||.++++++|+++| +.||.|.++.++.+..++.++|||||+|.+.++|.+|++.+++..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALF-RAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHH-HTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 46799999999999999999999 89999999999999889999999999999999999999999999999999999998
Q ss_pred CCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEe
Q 015091 252 TNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQF 325 (413)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f 325 (413)
..... ....++|||+|||..+++++|+++|+.||.|.++.+.++ +++|||+|
T Consensus 81 ~~~~~----------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f 138 (168)
T 1b7f_A 81 RPGGE----------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRY 138 (168)
T ss_dssp CCCSS----------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEE
T ss_pred CCCcc----------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEE
Confidence 76432 234588999999999999999999999999999999765 48999999
Q ss_pred cCHHHHHHHHHHhcCceeCC--eeEEEEec
Q 015091 326 ADRSCAEEALRMLNGTQLGG--QNIRLSWG 353 (413)
Q Consensus 326 ~~~~~a~~a~~~l~~~~~~g--~~l~v~~~ 353 (413)
.+.++|.+|+..|||..++| +.|+|+||
T Consensus 139 ~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 139 NKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp SSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999999999987 99999986
No 13
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.98 E-value=7.1e-32 Score=234.07 Aligned_cols=177 Identities=19% Similarity=0.402 Sum_probs=150.8
Q ss_pred CCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccC
Q 015091 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (413)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 251 (413)
..++|||+|||.++++++|+++| +.||.|.++.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAF-APFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHH-GGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECCCCCCCHHHHHHHH-HhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 35689999999999999999999 89999999999999889999999999999999999999999999999999999887
Q ss_pred CCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEe
Q 015091 252 TNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQF 325 (413)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f 325 (413)
.......... ..........++|||+||+.++++++|+++|+.||.|.++.+.++ +++|||+|
T Consensus 106 ~~~~~~~~~~-----------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F 174 (216)
T 2qfj_A 106 SNIGQAQPII-----------DQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEY 174 (216)
T ss_dssp SCCGGGHHHH-----------HHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEE
T ss_pred CCccccchhh-----------hhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEe
Confidence 6543221000 000011235689999999999999999999999999999999765 68999999
Q ss_pred cCHHHHHHHHHHhcCceeCCeeEEEEeccCCCCCC
Q 015091 326 ADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 360 (413)
Q Consensus 326 ~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 360 (413)
.+.++|.+|+..|||..|+|+.|+|.|++.+....
T Consensus 175 ~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 175 EKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp SSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred cCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCCC
Confidence 99999999999999999999999999999865433
No 14
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.98 E-value=4e-31 Score=219.65 Aligned_cols=158 Identities=28% Similarity=0.538 Sum_probs=145.5
Q ss_pred CceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCC
Q 015091 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (413)
Q Consensus 173 ~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 252 (413)
+++|||+|||.++++++|+++| +.||.|.++.++.+..++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f-~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLF-GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHH-HhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 5799999999999999999999 899999999999999899999999999999999999999999999999999999987
Q ss_pred CCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEec
Q 015091 253 NKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFA 326 (413)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~ 326 (413)
..... ...++|||+|||..+++++|+++|+.||.|.++.+..+ +++|||+|.
T Consensus 81 ~~~~~----------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~ 138 (167)
T 1fxl_A 81 PSSAS----------------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 138 (167)
T ss_dssp CCCGG----------------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCccc----------------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeC
Confidence 64321 23578999999999999999999999999999999654 589999999
Q ss_pred CHHHHHHHHHHhcCceeCCee--EEEEec
Q 015091 327 DRSCAEEALRMLNGTQLGGQN--IRLSWG 353 (413)
Q Consensus 327 ~~~~a~~a~~~l~~~~~~g~~--l~v~~~ 353 (413)
+.++|.+|++.|||..++|+. |+|+||
T Consensus 139 ~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 139 KRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp SHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999999999999999999975 888885
No 15
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.98 E-value=5.4e-31 Score=220.68 Aligned_cols=168 Identities=18% Similarity=0.342 Sum_probs=148.4
Q ss_pred CcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCC--CcccEEEEEEcCHHHHHHHHHHhCCCcCC-CCCccee
Q 015091 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTG--QIEGYGFIEFISRAGAERVLQTFNGTPMP-NGEQNFR 156 (413)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g--~~~g~afV~f~~~~~A~~a~~~l~g~~~~-~~~~~~~ 156 (413)
++++|||+|||.++|+++|+++|+.||.|.+|++++++.++ +++|||||+|.+.++|.+|++.|++..+. +..+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998876 89999999999999999999999998764 3456666
Q ss_pred eeeccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhh
Q 015091 157 LNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (413)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l 236 (413)
+.++.... ......++|||+||+.++++++|+++| +.||.|..+.++.+. +|.++|||||+|.+.++|.+|++.|
T Consensus 82 ~~~~~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~F-~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l 156 (175)
T 3nmr_A 82 MKPADSEK---NNAVEDRKLFIGMISKKCTENDIRVMF-SSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAM 156 (175)
T ss_dssp EEECGGGC---CSCGGGSEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred Eccccccc---cccCCCCeEEEcCCCCcCCHHHHHHHH-HhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHh
Confidence 66554332 223467799999999999999999999 899999999999986 6899999999999999999999999
Q ss_pred CCcccc---CcceEeccCC
Q 015091 237 NGVFCS---TRPMRIGPAT 252 (413)
Q Consensus 237 ~~~~~~---g~~i~v~~~~ 252 (413)
++..+. ++.|.|.+++
T Consensus 157 ~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 157 HQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp TTSCCCTTCSSCCEEEECC
T ss_pred cCCcccCCCCCCeEEEecC
Confidence 998776 4999999874
No 16
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=7.7e-32 Score=224.02 Aligned_cols=165 Identities=24% Similarity=0.424 Sum_probs=144.3
Q ss_pred CcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeee
Q 015091 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (413)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 159 (413)
++++|||+|||.++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++. +..+.++.+.+ .+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v--~~ 77 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDP--KR 77 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCC--EE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccc--cc
Confidence 578999999999999999999999999999999999988999999999999999999999985 34454433333 33
Q ss_pred ccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCc
Q 015091 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (413)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~ 239 (413)
+... ......++|||+||+.++++++|+++| +.||.|..+.++.+..++.++|||||+|.+.++|.+|++ +++.
T Consensus 78 ~~~~----~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~ 151 (167)
T 2cjk_A 78 AIPR----DEQDKTGKIFVGGIGPDVRPKEFEEFF-SQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFI 151 (167)
T ss_dssp CCCH----HHHHHCEEEEEEEECTTCCHHHHHHHH-HTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEE
T ss_pred ccch----hhccCCCeEEECCCCCCCCHHHHHHHH-HhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCE
Confidence 2211 122346789999999999999999999 899999999999998899999999999999999999996 8999
Q ss_pred cccCcceEeccCCCC
Q 015091 240 FCSTRPMRIGPATNK 254 (413)
Q Consensus 240 ~~~g~~i~v~~~~~~ 254 (413)
.+.|+.|.|.++.++
T Consensus 152 ~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 152 DFKDRKIEIKRAEPR 166 (167)
T ss_dssp CSSSSCEEEEECCCC
T ss_pred EeCCeEEEEeecCCC
Confidence 999999999998764
No 17
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=2.8e-30 Score=216.35 Aligned_cols=161 Identities=24% Similarity=0.482 Sum_probs=142.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCC--CCceeEEEEeCCHHHHHHHHHhhCCcccc---Ccce
Q 015091 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTG--RTKGYGFVRFGDESEQLRAMTEMNGVFCS---TRPM 246 (413)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g--~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~~i 246 (413)
.+++|||+|||.++++++|+++| +.||.|.++.++.+..++ +++|||||+|.+.++|.+|++.|++..+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELF-EQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 46799999999999999999999 899999999999998776 89999999999999999999999998765 5666
Q ss_pred EeccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-----CcEE
Q 015091 247 RIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCG 321 (413)
Q Consensus 247 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-----~~~a 321 (413)
.+.++..... .....++|||+|||.++++++|+++|+.||.|.++.+.++ +++|
T Consensus 81 ~~~~~~~~~~---------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~a 139 (175)
T 3nmr_A 81 QMKPADSEKN---------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCA 139 (175)
T ss_dssp EEEECGGGCC---------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEE
T ss_pred EEcccccccc---------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEE
Confidence 7766554322 1224578999999999999999999999999999999765 7899
Q ss_pred EEEecCHHHHHHHHHHhcCceeC---CeeEEEEecc
Q 015091 322 FVQFADRSCAEEALRMLNGTQLG---GQNIRLSWGR 354 (413)
Q Consensus 322 fV~f~~~~~a~~a~~~l~~~~~~---g~~l~v~~~~ 354 (413)
||+|.+.++|.+|+..|||..+. ++.|+|+|+.
T Consensus 140 fV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 140 FVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999999999999999998865 4999999973
No 18
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=4.4e-30 Score=232.01 Aligned_cols=182 Identities=22% Similarity=0.384 Sum_probs=149.4
Q ss_pred CCCCCceEEecCCCCCCCHHHHH----HHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCc
Q 015091 169 DDTPDHTIFVGDLAADVTDYMLQ----ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~----~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 244 (413)
+..++++|||+||+.++++++|+ ++| +.||.|.+|.++. +++++|||||+|.+.++|.+|++.|++..+.|+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F-~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHH-hccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 35668899999999999999976 899 8999999988875 678999999999999999999999999999999
Q ss_pred ceEeccCCCCCccCCCccCCCC--------------------ccc-----------------------------------
Q 015091 245 PMRIGPATNKKTVSGQQQYPKA--------------------SYQ----------------------------------- 269 (413)
Q Consensus 245 ~i~v~~~~~~~~~~~~~~~~~~--------------------~~~----------------------------------- 269 (413)
.|+|.++............... ...
T Consensus 81 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 9999998665431100000000 000
Q ss_pred ----------------------------------CcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEee
Q 015091 270 ----------------------------------NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 315 (413)
Q Consensus 270 ----------------------------------~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~ 315 (413)
............+++|||+||+..+++++|+++|+.||.|.+|.+.
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 0000011233467899999999999999999999999999999998
Q ss_pred CCC-cEEEEEecCHHHHHHHHHHhcCceeC-CeeEEEEecc
Q 015091 316 AGK-RCGFVQFADRSCAEEALRMLNGTQLG-GQNIRLSWGR 354 (413)
Q Consensus 316 ~~~-~~afV~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~ 354 (413)
.++ ++|||+|.+.++|.+|+..|||..|+ |+.|+|+|++
T Consensus 241 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 241 PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 876 99999999999999999999999999 9999999987
No 19
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=8.6e-30 Score=222.40 Aligned_cols=182 Identities=21% Similarity=0.351 Sum_probs=150.1
Q ss_pred CCCCCceEEecCCCC-CCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceE
Q 015091 169 DDTPDHTIFVGDLAA-DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 247 (413)
....+++|||+|||. ++++++|+++| +.||.|.++.++.+. +|||||+|.+.++|++|++.|++..+.|+.|.
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F-~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILF-GVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHH-HHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHH-HhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 356678999999999 99999999999 899999999998765 78999999999999999999999999999999
Q ss_pred eccCCCCCccCCCccCCCC------------cc-cCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCC-CeEEEE
Q 015091 248 IGPATNKKTVSGQQQYPKA------------SY-QNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYG-QLVHVK 313 (413)
Q Consensus 248 v~~~~~~~~~~~~~~~~~~------------~~-~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~v~ 313 (413)
|.++............... .. .............+++|||+||+..+++++|+++|+.|| .|.++.
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~ 183 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 183 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEE
Confidence 9998765322211100000 00 000001112234579999999999999999999999999 999999
Q ss_pred e-eCCCcEEEEEecCHHHHHHHHHHhcCceeC-CeeEEEEeccCC
Q 015091 314 I-PAGKRCGFVQFADRSCAEEALRMLNGTQLG-GQNIRLSWGRSP 356 (413)
Q Consensus 314 ~-~~~~~~afV~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~~~ 356 (413)
+ .+++++|||+|.+.++|.+|+..|+|..|+ |+.|+|+|++++
T Consensus 184 i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9 558999999999999999999999999999 999999999864
No 20
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=2.1e-30 Score=221.57 Aligned_cols=183 Identities=19% Similarity=0.402 Sum_probs=144.8
Q ss_pred CCceEEecCCCCCCCHHHHHHHHhhhCCCcceeE-----EEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcce
Q 015091 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAK-----VVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (413)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~-----~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 246 (413)
.+++|||+|||.++++++|+++| +.||.|..+. .+.+...++++|||||+|.+.++|.+|+ .|++..+.|+.|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F-~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFF-NAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHH-HHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHH-HHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 46799999999999999999999 8885443321 1112223567999999999999999999 899999999999
Q ss_pred EeccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcE
Q 015091 247 RIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRC 320 (413)
Q Consensus 247 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~ 320 (413)
.|.++............... ..............++|||+||+..+++++|+++|+.||.|.++.+..+ +++
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~ 158 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSV--YVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 158 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSC--CCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcC--CCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceE
Confidence 99998776433221111110 0011112223456799999999999999999999999999999999765 689
Q ss_pred EEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCCC
Q 015091 321 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 358 (413)
Q Consensus 321 afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 358 (413)
|||+|.+.++|.+|+..|||..|+|+.|+|+|++++..
T Consensus 159 afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 159 AFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999999999999987543
No 21
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=6.8e-31 Score=218.32 Aligned_cols=159 Identities=21% Similarity=0.406 Sum_probs=143.8
Q ss_pred CCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccC
Q 015091 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (413)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 251 (413)
++++|||+|||.++++++|+++| +.||.|.++.++.+..+++++|||||+|.+.++|.+|++. +..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYF-GKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHH-TTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 46799999999999999999999 8999999999999988999999999999999999999974 57899999999887
Q ss_pred CCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEe
Q 015091 252 TNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQF 325 (413)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f 325 (413)
...... ...++|||+|||.++++++|+++|+.||.|.++.+..+ +|+|||+|
T Consensus 79 ~~~~~~----------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f 136 (167)
T 2cjk_A 79 IPRDEQ----------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY 136 (167)
T ss_dssp CCHHHH----------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEE
T ss_pred cchhhc----------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEE
Confidence 654321 13468999999999999999999999999999999754 58999999
Q ss_pred cCHHHHHHHHHHhcCceeCCeeEEEEeccCC
Q 015091 326 ADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 356 (413)
Q Consensus 326 ~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 356 (413)
.+.++|.+|+. +++..|+|+.|+|.|++++
T Consensus 137 ~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 137 DSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 99999999998 8999999999999999864
No 22
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=9.9e-31 Score=219.04 Aligned_cols=164 Identities=19% Similarity=0.370 Sum_probs=143.6
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEe
Q 015091 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 248 (413)
.....++|||+|||.++++++|+++| +.||.+.. .++.+..++.++|||||+|.+.++|.+|+ +|++..+.|+.|.|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f-~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAI-SELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHH-HHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHH-HHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 45678899999999999999999999 88888776 33444457889999999999999999999 69999999999999
Q ss_pred ccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEee--CCCcEEEEEec
Q 015091 249 GPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP--AGKRCGFVQFA 326 (413)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~--~~~~~afV~f~ 326 (413)
.++...... .....++|||+|||.++++++|+++|+.||.|..+ .. ..+++|||+|.
T Consensus 86 ~~~~~~~~~--------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~ 144 (175)
T 1fje_B 86 EKPKGRDSK--------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFK 144 (175)
T ss_dssp ECCCCSSCS--------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECS
T ss_pred ecCCCcccc--------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEEC
Confidence 998765432 12356899999999999999999999999999888 22 34799999999
Q ss_pred CHHHHHHHHHHhcCceeCCeeEEEEeccCC
Q 015091 327 DRSCAEEALRMLNGTQLGGQNIRLSWGRSP 356 (413)
Q Consensus 327 ~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 356 (413)
+.++|.+|+..|||..|+|+.|+|+|++++
T Consensus 145 ~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 145 SEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp SHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 999999999999999999999999999865
No 23
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=1.1e-29 Score=216.65 Aligned_cols=176 Identities=20% Similarity=0.246 Sum_probs=140.2
Q ss_pred CCceEEecCCC-CCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEecc
Q 015091 172 PDHTIFVGDLA-ADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (413)
Q Consensus 172 ~~~~l~v~~lp-~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 250 (413)
.+++|||+||+ .++++++|+++| +.||.|.+++++.+ .+|||||+|.+.++|++|++.||+..+.|+.|+|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F-~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVF-CLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHH-TTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHH-HhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 46799999999 899999999999 89999999999754 389999999999999999999999999999999999
Q ss_pred CCCCCccCCCc--cCCC----CcccC----c-c----cccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCe--EEEE
Q 015091 251 ATNKKTVSGQQ--QYPK----ASYQN----S-Q----VAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL--VHVK 313 (413)
Q Consensus 251 ~~~~~~~~~~~--~~~~----~~~~~----~-~----~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i--~~v~ 313 (413)
+.......... .... ..+.. . . .........+++|||+|||.++++++|+++|+.||.| .++.
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 87543211000 0000 00000 0 0 0011123457899999999999999999999999999 8888
Q ss_pred eeCC----CcEEEEEecCHHHHHHHHHHhcCceeCCe----eEEEEec
Q 015091 314 IPAG----KRCGFVQFADRSCAEEALRMLNGTQLGGQ----NIRLSWG 353 (413)
Q Consensus 314 ~~~~----~~~afV~f~~~~~a~~a~~~l~~~~~~g~----~l~v~~~ 353 (413)
+..+ +++|||+|.+.++|.+|+..|||..|+|+ .+.|+|+
T Consensus 157 ~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 157 VFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp ECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8665 48999999999999999999999999887 4666664
No 24
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=1.4e-29 Score=211.46 Aligned_cols=160 Identities=23% Similarity=0.426 Sum_probs=140.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhcc----C-------ceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCc
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHT----G-------EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTP 147 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~----G-------~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~ 147 (413)
++.++|||+|||.++|+++|+++|+.| | .|.++++.++ +|||||+|.+.++|.+|+ .+|+..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 467999999999999999999999999 6 7777777544 599999999999999999 899999
Q ss_pred CCCCCcceeeeeccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHH
Q 015091 148 MPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227 (413)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~ 227 (413)
+.++.+. +.++... ......++|||+|||.++++++|+++| +.||.|..+.+..+..++.++|||||+|.+.+
T Consensus 75 ~~g~~i~--v~~~~~~----~~~~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~ 147 (172)
T 2g4b_A 75 FQGQSLK--IRRPHDY----QPLPGAHKLFIGGLPNYLNDDQVKELL-TSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN 147 (172)
T ss_dssp ETTEECE--EECCSSC----CCCTTTTCEEEECCCTTCCHHHHHHHH-HTTSCEEEEEEEECTTTCSEEEEEEEEESSTT
T ss_pred ecCceee--ecCCccc----CCCCCCCEEEEEcCCCcCCHHHHHHHH-HhcCCceEEEEEecCCCCCcceEEEEEeCCHH
Confidence 9765444 4443322 223457899999999999999999999 89999999999999889999999999999999
Q ss_pred HHHHHHHhhCCccccCcceEeccCC
Q 015091 228 EQLRAMTEMNGVFCSTRPMRIGPAT 252 (413)
Q Consensus 228 ~a~~a~~~l~~~~~~g~~i~v~~~~ 252 (413)
+|.+|++.|++..++|+.|.|.++.
T Consensus 148 ~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 148 VTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999999999873
No 25
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=1.6e-29 Score=216.02 Aligned_cols=179 Identities=22% Similarity=0.362 Sum_probs=147.0
Q ss_pred CCceEEecCCCC-CCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEecc
Q 015091 172 PDHTIFVGDLAA-DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (413)
Q Consensus 172 ~~~~l~v~~lp~-~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 250 (413)
.+++|||+|||. ++++++|+++| +.||.|.++.++.+. +|||||+|.+.++|.+|++.|++..+.|+.|.|.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F-~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 75 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILF-GVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 75 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHH-HTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHH-HhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEE
Confidence 357999999999 99999999999 899999999987664 78999999999999999999999999999999999
Q ss_pred CCCCCccCCCccCCCCc----c--------c-CcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCC-CeEEEEe-e
Q 015091 251 ATNKKTVSGQQQYPKAS----Y--------Q-NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYG-QLVHVKI-P 315 (413)
Q Consensus 251 ~~~~~~~~~~~~~~~~~----~--------~-~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~v~~-~ 315 (413)
+................ . . ............+++|||+||+..+++++|+++|+.|| .|.++.+ .
T Consensus 76 a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~ 155 (198)
T 1qm9_A 76 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 155 (198)
T ss_dssp CCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESS
T ss_pred ecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEe
Confidence 87653222111000000 0 0 00000112234578999999999999999999999999 9999999 4
Q ss_pred CCCcEEEEEecCHHHHHHHHHHhcCceeC-CeeEEEEeccCC
Q 015091 316 AGKRCGFVQFADRSCAEEALRMLNGTQLG-GQNIRLSWGRSP 356 (413)
Q Consensus 316 ~~~~~afV~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~~~ 356 (413)
.++++|||+|.+.++|.+|+..|||..|+ |+.|+|.|++++
T Consensus 156 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 156 KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 47999999999999999999999999999 999999999864
No 26
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=4.6e-29 Score=208.26 Aligned_cols=152 Identities=20% Similarity=0.493 Sum_probs=134.5
Q ss_pred CCceEEecCCCCCCCHHHHHHHHhhhC----C-------CcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCcc
Q 015091 172 PDHTIFVGDLAADVTDYMLQETFRARY----P-------STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (413)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~----g-------~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~ 240 (413)
.+++|||+|||.++++++|+++| +.| | .|.++.+ ++++|||||+|.+.++|.+|+ .+++..
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F-~~~g~~~g~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFF-NAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHH-HHHHHHTTCCSSSSCSEEEEEE------ETTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred cccEEEEcCCCcccCHHHHHHHH-HHHhhhcccccCCCCceeeeEe------cCCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 46799999999999999999999 888 5 3343333 345899999999999999999 999999
Q ss_pred ccCcceEeccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC---
Q 015091 241 CSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG--- 317 (413)
Q Consensus 241 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~--- 317 (413)
+.|+.|.|.++...... ...++|||+|||..+++++|+++|+.||.|.++.+..+
T Consensus 75 ~~g~~i~v~~~~~~~~~----------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~ 132 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQPL----------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT 132 (172)
T ss_dssp ETTEECEEECCSSCCCC----------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTT
T ss_pred ecCceeeecCCcccCCC----------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCC
Confidence 99999999987654321 23688999999999999999999999999999999765
Q ss_pred ---CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEec
Q 015091 318 ---KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 353 (413)
Q Consensus 318 ---~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 353 (413)
+++|||+|.+.++|.+|+..|||..|+|+.|+|+||
T Consensus 133 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 133 GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp CSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 689999999999999999999999999999999997
No 27
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=4.1e-29 Score=213.07 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=131.0
Q ss_pred CcceeeecCCC-CCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeee
Q 015091 80 EIRTLWIGDLQ-YWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (413)
Q Consensus 80 ~~~~l~v~~lp-~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 158 (413)
++++|||+||+ ..+|+++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|||..+.++.+.|.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~-- 75 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVC-- 75 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE--
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE--
Confidence 57899999999 899999999999999999999998753 4999999999999999999999999987655544
Q ss_pred eccCCCCCC---------------------------------CCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCc--ce
Q 015091 159 WASFGAGEK---------------------------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPST--KG 203 (413)
Q Consensus 159 ~~~~~~~~~---------------------------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v--~~ 203 (413)
++....... ....++++|||+|||+++++++|+++| +.||.| .+
T Consensus 76 ~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F-~~~G~v~~~~ 154 (205)
T 3tyt_A 76 VSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEIC-DELGVKRPTS 154 (205)
T ss_dssp ECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHH-HHHTCCCCSE
T ss_pred EccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHH-HhcCCcceEE
Confidence 432211000 011345789999999999999999999 899999 77
Q ss_pred eEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcc
Q 015091 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (413)
Q Consensus 204 ~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 245 (413)
++++.+. +..+|+|||+|.+.++|.+|+..||+..+.|+.
T Consensus 155 v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 155 VKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp EEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred EEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 8777664 556799999999999999999999999998874
No 28
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=2.1e-28 Score=221.04 Aligned_cols=165 Identities=22% Similarity=0.439 Sum_probs=141.5
Q ss_pred CCCCcceeeecCCCCCCCHHHHH----HHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCC
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLN----TCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~----~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~ 152 (413)
+..++++|||+||+.++|+++|+ ++|+.||.|.+|++++ +++++|||||+|.+.++|.+|++.|||..+.++.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45678999999999999999976 8999999999999886 5889999999999999999999999999997755
Q ss_pred cceeeeeccCCCC-------------------------------------------------------------------
Q 015091 153 QNFRLNWASFGAG------------------------------------------------------------------- 165 (413)
Q Consensus 153 ~~~~~~~~~~~~~------------------------------------------------------------------- 165 (413)
+ ++.++.....
T Consensus 82 l--~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (282)
T 3pgw_A 82 M--RIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPG 159 (282)
T ss_pred E--EEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCC
Confidence 4 4444432221
Q ss_pred ----------------------------------------CCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeE
Q 015091 166 ----------------------------------------EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAK 205 (413)
Q Consensus 166 ----------------------------------------~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~ 205 (413)
.......+++|||+||+.++++++|+++| +.||.|..++
T Consensus 160 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F-~~~G~i~~v~ 238 (282)
T 3pgw_A 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLF-NQFPGFKEVR 238 (282)
T ss_pred CCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHH-HhcCCeEEEE
Confidence 00122356789999999999999999999 8999999999
Q ss_pred EEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCcccc-CcceEeccCC
Q 015091 206 VVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS-TRPMRIGPAT 252 (413)
Q Consensus 206 ~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~ 252 (413)
++.+. +|||||+|.+.++|.+|++.|++..+. |+.|+|.++.
T Consensus 239 ~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 239 LVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 98554 689999999999999999999999999 9999999874
No 29
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=9e-29 Score=211.46 Aligned_cols=167 Identities=22% Similarity=0.382 Sum_probs=141.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhcc----C-------ceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCc
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHT----G-------EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTP 147 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~----G-------~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~ 147 (413)
..+++|||+|||.++|+++|+++|+.| | .|.++++. +++|||||+|.+.++|.+|+ .||+..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 357999999999999999999999999 5 56666654 45699999999999999999 899999
Q ss_pred CCCCCcceeeeeccCCCC----------------CCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCC
Q 015091 148 MPNGEQNFRLNWASFGAG----------------EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRL 211 (413)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~ 211 (413)
+.++. +++.++..... ........++|||+||+.++++++|+++| +.||.|..+.+..+..
T Consensus 75 ~~g~~--i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f-~~~G~v~~~~~~~~~~ 151 (198)
T 2yh0_A 75 FQGQS--LKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELL-TSFGPLKAFNLVKDSA 151 (198)
T ss_dssp ETTEE--EEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHH-HTBSCEEEEEEEECTT
T ss_pred EcCce--EEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHH-HHcCCccEEEEeecCC
Confidence 96654 44544433211 11122566899999999999999999999 8999999999999988
Q ss_pred CCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCCCC
Q 015091 212 TGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255 (413)
Q Consensus 212 ~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 255 (413)
++.++|||||+|.+.++|.+|++.|++..++|+.|+|.++..+.
T Consensus 152 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 152 TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp TCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999999999999999999999987754
No 30
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=3.5e-28 Score=219.79 Aligned_cols=172 Identities=16% Similarity=0.268 Sum_probs=153.9
Q ss_pred CcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeee
Q 015091 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (413)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 159 (413)
..++|||+|||.++|+++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+|++.|++..+.++ .+++.+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~--~i~v~~ 171 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPR--TLYVHW 171 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc--EEEEEE
Confidence 457999999999999999999999999999999999998999999999999999999999999999999664 555555
Q ss_pred ccCCCCCCCCCCCCceEEecCCCCCC-CHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCC
Q 015091 160 ASFGAGEKRDDTPDHTIFVGDLAADV-TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238 (413)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~v~~lp~~~-~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~ 238 (413)
+..... .......++|||+|||.++ ++++|+++| +.||.|..+.++.+. +|.++|+|||+|.+.++|.+|++.|++
T Consensus 172 a~~~~~-~~~~~~~~~l~v~nlp~~~~~~~~l~~~f-~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g 248 (284)
T 3smz_A 172 TDAGQL-TPALLHSRCLCVDRLPPGFNDVDALCRAL-SAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADG 248 (284)
T ss_dssp CCGGGC-CTTTTSCSEEEEECCCTTCCCHHHHHHHT-CSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCC-CcccCCccEEEEecCCcccCCHHHHHHHh-hCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 544322 2234567899999999995 999999999 899999999999887 899999999999999999999999999
Q ss_pred ccccCcceEeccCCCCCc
Q 015091 239 VFCSTRPMRIGPATNKKT 256 (413)
Q Consensus 239 ~~~~g~~i~v~~~~~~~~ 256 (413)
..+.|+.|.|.++..+..
T Consensus 249 ~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 249 LSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp CEETTEECEEEECCSSSC
T ss_pred CccCCeEEEEEEecCCCc
Confidence 999999999999987654
No 31
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=1.3e-29 Score=212.13 Aligned_cols=166 Identities=17% Similarity=0.281 Sum_probs=140.9
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
...+.++|||+|||.++|+++|+++|+.||.+.. .++.+..+++++|||||+|.+.++|.+|+ .||+..+.++ .++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~--~l~ 84 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGN--EIK 84 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTE--EEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCe--EEE
Confidence 4567899999999999999999999999998766 33444457889999999999999999999 5999999754 555
Q ss_pred eeeccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhh
Q 015091 157 LNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (413)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l 236 (413)
+.++... ........++|||+||+.++++++|+++| +.||.|..+ ..++.++|||||+|.+.++|.+|++.|
T Consensus 85 v~~~~~~--~~~~~~~~~~l~v~nlp~~~t~~~l~~~F-~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l 156 (175)
T 1fje_B 85 LEKPKGR--DSKKVRAARTLLAKNLSFNITEDELKEVF-EDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEK 156 (175)
T ss_dssp EECCCCS--SCSTTGGGGEEEEESCCSSCCHHHHHHHC-TTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHH
T ss_pred EecCCCc--cccccccCCEEEEeCCCCCCCHHHHHHHH-HhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHh
Confidence 5555433 22334567899999999999999999999 788876544 558899999999999999999999999
Q ss_pred CCccccCcceEeccCCCC
Q 015091 237 NGVFCSTRPMRIGPATNK 254 (413)
Q Consensus 237 ~~~~~~g~~i~v~~~~~~ 254 (413)
++..+.|+.|+|.++.++
T Consensus 157 ~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 157 QGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp TEEEETTEEEEEEECSSC
T ss_pred CCCEECCeEEEEEecCCC
Confidence 999999999999998764
No 32
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=3.7e-28 Score=212.06 Aligned_cols=164 Identities=15% Similarity=0.242 Sum_probs=139.4
Q ss_pred CCCcceeeecCCCC-CCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 78 PGEIRTLWIGDLQY-WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 78 ~~~~~~l~v~~lp~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
..++++|||+|||. ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|++..+.++.+.+.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45689999999999 99999999999999999999999875 4899999999999999999999999977555444
Q ss_pred eeeccCCCC--CC-----------------------------CCCCCCceEEecCCCCCCCHHHHHHHHhhhCC-Cccee
Q 015091 157 LNWASFGAG--EK-----------------------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYP-STKGA 204 (413)
Q Consensus 157 ~~~~~~~~~--~~-----------------------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g-~v~~~ 204 (413)
++..... .+ ....++++|||+||+.++++++|+++| +.|| .|..+
T Consensus 106 --~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f-~~~G~~i~~v 182 (229)
T 2adc_A 106 --LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLF-SSNGGVVKGF 182 (229)
T ss_dssp --CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHH-HTTSCCEEEE
T ss_pred --EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHH-HHcCCCeeEE
Confidence 4332210 00 012346889999999999999999999 8999 99999
Q ss_pred EEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCcccc-CcceEeccCCCC
Q 015091 205 KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS-TRPMRIGPATNK 254 (413)
Q Consensus 205 ~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~~~ 254 (413)
.++.+ .+|||||+|.+.++|.+|++.|++..+. |+.|+|.++...
T Consensus 183 ~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 183 KFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 88643 3789999999999999999999999999 999999998753
No 33
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=8e-28 Score=214.12 Aligned_cols=160 Identities=26% Similarity=0.445 Sum_probs=140.9
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
.....++|||+|||.++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|+..||+..+.++. ++
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~--l~ 89 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRP--LR 89 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEE--CE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCce--eE
Confidence 4467789999999999999999999999999999999755 499999999999999999999999997654 44
Q ss_pred eeeccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhh
Q 015091 157 LNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (413)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l 236 (413)
+.++. ..++|||+||+.++++++|+++| +.||.|..+.++.+ .+|+++|||||+|.+.++|.+|++.|
T Consensus 90 v~~a~----------~~~~l~v~nl~~~~t~~~l~~~F-~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 90 IRFAT----------HGAALTVKNLSPVVSNELLEQAF-SQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp EEECC----------CSSEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred eeecc----------cCCcccccCCCCCCCHHHHHHHH-HhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 44443 35689999999999999999999 89999999999999 48999999999999999999999999
Q ss_pred CC-cccc---CcceEeccCCCCCc
Q 015091 237 NG-VFCS---TRPMRIGPATNKKT 256 (413)
Q Consensus 237 ~~-~~~~---g~~i~v~~~~~~~~ 256 (413)
++ ..+. ++.|.|.++.....
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCCEES
T ss_pred cCCeEEecCCCceEEEeeccccCc
Confidence 55 4444 99999999876543
No 34
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=2.8e-28 Score=221.27 Aligned_cols=170 Identities=14% Similarity=0.268 Sum_probs=142.0
Q ss_pred CcceeeecCCCCCCCHHHHHHHhhccC-ceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeee
Q 015091 80 EIRTLWIGDLQYWMDETYLNTCFAHTG-EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (413)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 158 (413)
..++|||+|||.++++++|+++|+.|| .|.+|+++.++. |+++|||||+|.+.++|.+|++.|++..+.++ .+++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~ 192 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGY--TLVTK 192 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTE--ECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCc--EEEEE
Confidence 578999999999999999999999999 999999999874 88999999999999999999999999999764 45555
Q ss_pred eccCCCCCC---CCCCCCceEEecCCCCC-CCHHHHHHHHhhhCCCcceeEEEEcCC-CCCCceeEEEEeCCHHHHHHHH
Q 015091 159 WASFGAGEK---RDDTPDHTIFVGDLAAD-VTDYMLQETFRARYPSTKGAKVVIDRL-TGRTKGYGFVRFGDESEQLRAM 233 (413)
Q Consensus 159 ~~~~~~~~~---~~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~~g~v~~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~ 233 (413)
++....... ......++|||+||+.+ +++++|+++| +.||.|..+.++.+.. ++.++|||||+|.+.++|.+|+
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F-~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESF-EGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHH-GGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG
T ss_pred ECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHH-hccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH
Confidence 554332222 23456789999999999 9999999999 8999999999988775 5899999999999999999999
Q ss_pred HhhCCccccCcceEeccCCCC
Q 015091 234 TEMNGVFCSTRPMRIGPATNK 254 (413)
Q Consensus 234 ~~l~~~~~~g~~i~v~~~~~~ 254 (413)
.|++..+.|+.|.|.++..+
T Consensus 272 -~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 -QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp -GGTTEEETTEEEEEEECCCC
T ss_pred -HhcCCEECCcEEEEEEecCC
Confidence 99999999999999998765
No 35
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=2.2e-27 Score=211.30 Aligned_cols=156 Identities=27% Similarity=0.425 Sum_probs=139.4
Q ss_pred CCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcce
Q 015091 167 KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (413)
Q Consensus 167 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 246 (413)
.......++|||+|||.++|+++|+++| +.||.|..+.+.+ ++|||||+|.+.++|.+|++.+++..+.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l 88 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLF-ERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPL 88 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHT-GGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHH-HhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCcee
Confidence 3445667899999999999999999999 8999999998853 37999999999999999999999999999999
Q ss_pred EeccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-----CcEE
Q 015091 247 RIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCG 321 (413)
Q Consensus 247 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-----~~~a 321 (413)
.|.++.. .++|||+||+..+++++|+++|+.||.|.+|.+..+ +|+|
T Consensus 89 ~v~~a~~----------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~a 140 (261)
T 3sde_A 89 RIRFATH----------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKG 140 (261)
T ss_dssp EEEECCC----------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEE
T ss_pred Eeeeccc----------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEE
Confidence 9998753 368999999999999999999999999999999755 7899
Q ss_pred EEEecCHHHHHHHHHHhcC-ceeC---CeeEEEEeccCCC
Q 015091 322 FVQFADRSCAEEALRMLNG-TQLG---GQNIRLSWGRSPS 357 (413)
Q Consensus 322 fV~f~~~~~a~~a~~~l~~-~~~~---g~~l~v~~~~~~~ 357 (413)
||+|.+.++|.+|+..|++ ..+. ++.|.|.++....
T Consensus 141 fV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 141 FVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp EEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred EEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 9999999999999999954 4444 9999999987643
No 36
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=1.2e-27 Score=204.41 Aligned_cols=161 Identities=16% Similarity=0.248 Sum_probs=137.5
Q ss_pred CcceeeecCCCC-CCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeee
Q 015091 80 EIRTLWIGDLQY-WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (413)
Q Consensus 80 ~~~~l~v~~lp~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 158 (413)
.+++|||+|||. ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.||+..+.++.+.+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~-- 74 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT-- 74 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEE--
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEE--
Confidence 368999999999 99999999999999999999998875 4899999999999999999999999977655554
Q ss_pred eccCCCC--CC-----------------------------CCCCCCceEEecCCCCCCCHHHHHHHHhhhCC-CcceeEE
Q 015091 159 WASFGAG--EK-----------------------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYP-STKGAKV 206 (413)
Q Consensus 159 ~~~~~~~--~~-----------------------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g-~v~~~~~ 206 (413)
++..... .+ ....++++|||+||+.++++++|+++| +.|| .|..+.+
T Consensus 75 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f-~~~G~~v~~v~i 153 (198)
T 1qm9_A 75 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLF-SSNGGVVKGFKF 153 (198)
T ss_dssp ECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHH-HHTTSCCCEEEE
T ss_pred EecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHH-HHcCCCceEEEE
Confidence 4332210 00 012347889999999999999999999 8999 9999988
Q ss_pred EEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCcccc-CcceEeccCCC
Q 015091 207 VIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS-TRPMRIGPATN 253 (413)
Q Consensus 207 ~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~~ 253 (413)
+.+ .+|+|||+|.+.++|.+|++.|++..+. |+.|+|.++..
T Consensus 154 ~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 154 FQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp SST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred EeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 653 2789999999999999999999999999 99999999865
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=2.4e-22 Score=164.68 Aligned_cols=145 Identities=24% Similarity=0.358 Sum_probs=115.9
Q ss_pred EEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCC-------cceeeeeccCCCCCCCCCCCCceEEecCCC
Q 015091 110 AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE-------QNFRLNWASFGAGEKRDDTPDHTIFVGDLA 182 (413)
Q Consensus 110 ~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp 182 (413)
+++++.+.. +++|||||+|.+.++|++|++.+++....... .....................++|||+||+
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 577888763 78999999999999999999887754322211 111111111111222334557899999999
Q ss_pred CCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCCCCcc
Q 015091 183 ADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257 (413)
Q Consensus 183 ~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~ 257 (413)
.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|++|++.|++..+.|+.|+|.++......
T Consensus 80 ~~~~~~~l~~~F-~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 80 YRTSPDTLRRVF-EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TTCCHHHHHHHH-HHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CCCCHHHHHHHH-HhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 999999999999 89999999999999889999999999999999999999999999999999999999876543
No 38
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=7.7e-22 Score=161.65 Aligned_cols=145 Identities=23% Similarity=0.308 Sum_probs=109.0
Q ss_pred eeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCCCCccCCCccCCCCcccCcccccCCCCCCC
Q 015091 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNN 282 (413)
Q Consensus 203 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (413)
.+.++++.. +++||+||+|.+.++|++|++.+++....+..+.+............ .............
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 70 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEG---------SHHHHHHMDVEGM 70 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECC---------CCCSSCCCCCCBC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccc---------ccccccccCCCCC
Confidence 356666653 68999999999999999999888764433333333222111100000 0011112233457
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCC
Q 015091 283 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 356 (413)
Q Consensus 283 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 356 (413)
++|||+||+.++++++|+++|+.||.|.+|.+..+ +|+|||+|.+.++|.+|+..|||..|+|+.|+|+|++++
T Consensus 71 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 71 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 89999999999999999999999999999999764 689999999999999999999999999999999999875
Q ss_pred CC
Q 015091 357 SN 358 (413)
Q Consensus 357 ~~ 358 (413)
..
T Consensus 151 ~~ 152 (158)
T 2kn4_A 151 RP 152 (158)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 39
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.88 E-value=4.2e-22 Score=161.59 Aligned_cols=138 Identities=24% Similarity=0.304 Sum_probs=115.3
Q ss_pred CCCCceeEEEEeCCHHHHHHHHHhh-CCccccCcceEeccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecC
Q 015091 212 TGRTKGYGFVRFGDESEQLRAMTEM-NGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNL 290 (413)
Q Consensus 212 ~g~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 290 (413)
....+|+++++|.+.++|++|++.+ ++..++| .+.+.++........... ..............++|||+||
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~V~nl 81 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH------HHHHHMHRDSCPLDCKVYVGNL 81 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS------SCCCCSCSSSSTTSCEEEEESC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc------cccccccccCCCCCCEEEEeCC
Confidence 4467999999999999999999999 9999999 999998765432211100 0011122334456789999999
Q ss_pred CCCCCHHHHHHHHhcCCCeEEEEeeCC-CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCC
Q 015091 291 DSIVTDEHLRELFSQYGQLVHVKIPAG-KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 356 (413)
Q Consensus 291 p~~~~~~~l~~~f~~~G~i~~v~~~~~-~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 356 (413)
+.++++++|+++|+.||.|.+|.+.++ +++|||+|.+.++|.+|+..|||..|+|+.|+|+|++++
T Consensus 82 ~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 82 GNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp CSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999999999999887 999999999999999999999999999999999999865
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=4.3e-21 Score=147.86 Aligned_cols=106 Identities=18% Similarity=0.346 Sum_probs=70.0
Q ss_pred CcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeee
Q 015091 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (413)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 159 (413)
.+.+|||+|||.++|+++|+++|+.||.|.+|+|++++ +.++|||||+|.+.++|++|++.|++..+.++. +++.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~--i~V~~ 79 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK--VFVGR 79 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEE--CEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEE--EEEEE
Confidence 45689999999999999999999999999999999986 568999999999999999999999999997754 44555
Q ss_pred ccCCCCC----CCCCCCCceEEecCCCCCCCHHH
Q 015091 160 ASFGAGE----KRDDTPDHTIFVGDLAADVTDYM 189 (413)
Q Consensus 160 ~~~~~~~----~~~~~~~~~l~v~~lp~~~~~~~ 189 (413)
+...... .......++|||+||+.++|++.
T Consensus 80 a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 80 FKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SSCCCC----------------------------
T ss_pred CCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 4433211 12233456799999999999864
No 41
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.82 E-value=7.1e-20 Score=148.37 Aligned_cols=126 Identities=20% Similarity=0.332 Sum_probs=108.6
Q ss_pred CCcccEEEEEEcCHHHHHHHHHHh-CCCcCCCCCcceeeeeccCC------------CCCCCCCCCCceEEecCCCCCCC
Q 015091 120 GQIEGYGFIEFISRAGAERVLQTF-NGTPMPNGEQNFRLNWASFG------------AGEKRDDTPDHTIFVGDLAADVT 186 (413)
Q Consensus 120 g~~~g~afV~f~~~~~A~~a~~~l-~g~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~l~v~~lp~~~~ 186 (413)
.+.+|+++|+|.+.++|++|++.+ |+..+.+ .+++.++... ..........++|||+||+++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG---EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC---EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC---ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCC
Confidence 466899999999999999999999 9999977 5666555431 12233455678999999999999
Q ss_pred HHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCCC
Q 015091 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254 (413)
Q Consensus 187 ~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 254 (413)
+++|+++| +.||.|.++.++.+ ++|||||+|.+.++|.+|++.|++..+.|+.|+|.++..+
T Consensus 87 ~~~l~~~F-~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 87 KTELERAF-GYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp CHHHHHHH-HHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHH-HhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 99999999 89999999998765 5899999999999999999999999999999999998765
No 42
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=3.4e-20 Score=142.77 Aligned_cols=109 Identities=27% Similarity=0.458 Sum_probs=74.9
Q ss_pred CceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCC
Q 015091 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (413)
Q Consensus 173 ~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 252 (413)
+.+|||+|||.++++++|+++| +.||.|.+++++.+. +.++|||||+|.+.++|++|++.|++..+.|+.|.|.++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F-~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTF-SAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHH-hccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 5689999999999999999999 899999999999985 4479999999999999999999999999999999999987
Q ss_pred CCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHH
Q 015091 253 NKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 298 (413)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~ 298 (413)
.+...... ........++|||+||+.++|++-
T Consensus 82 ~~~~~~~~--------------~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAE--------------LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC------------------------------------------
T ss_pred Cccccccc--------------cccccCCCCceEeCCCCCCccccc
Confidence 65443221 111223446799999999998763
No 43
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=134.10 Aligned_cols=82 Identities=17% Similarity=0.274 Sum_probs=75.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhc--CceeCCeeEEEEeccCC
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN--GTQLGGQNIRLSWGRSP 356 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~~~~~ 356 (413)
....++|||+|||+++++++|+++|++||.|.+|.+.++||+|||+|++.++|.+|+..|+ +..|+|+.|+|+|++.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 3467899999999999999999999999999999999999999999999999999999886 47899999999999876
Q ss_pred CCCC
Q 015091 357 SNKQ 360 (413)
Q Consensus 357 ~~~~ 360 (413)
....
T Consensus 93 ~~~~ 96 (105)
T 1sjq_A 93 ELKT 96 (105)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 5544
No 44
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9e-19 Score=130.41 Aligned_cols=83 Identities=18% Similarity=0.295 Sum_probs=75.6
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhc--CceeCCeeEEEEeccC
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN--GTQLGGQNIRLSWGRS 355 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~~~~ 355 (413)
....+++|||+||+.++++++|+++|+.||.|.+|.+.++|++|||+|++.++|.+|+..|+ +..|.|+.|+|.|++.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 34567899999999999999999999999999999999999999999999999999999874 6789999999999997
Q ss_pred CCCCC
Q 015091 356 PSNKQ 360 (413)
Q Consensus 356 ~~~~~ 360 (413)
+..+.
T Consensus 91 ~~~~~ 95 (101)
T 2cq1_A 91 KELKT 95 (101)
T ss_dssp SSCCC
T ss_pred ccCcC
Confidence 66544
No 45
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.80 E-value=4.2e-19 Score=130.44 Aligned_cols=80 Identities=23% Similarity=0.329 Sum_probs=74.4
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCce--eCCeeEEEEeccC
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQ--LGGQNIRLSWGRS 355 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~~~~ 355 (413)
...++++|||+|||.++++++|+++|++||.|.++.+.++|++|||+|++.++|.+|+..|++.. |+|+.|+|+|++.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 34577899999999999999999999999999999999999999999999999999999999875 8899999999987
Q ss_pred CC
Q 015091 356 PS 357 (413)
Q Consensus 356 ~~ 357 (413)
+.
T Consensus 97 k~ 98 (100)
T 3r27_A 97 QK 98 (100)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 46
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=4.2e-19 Score=132.38 Aligned_cols=81 Identities=30% Similarity=0.521 Sum_probs=73.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeee
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 158 (413)
.+.++|||+|||.++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.|||..+.++ .+++.
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr--~l~V~ 94 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSK--TIKVS 94 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCE--EEEEE
Confidence 3567899999999999999999999999999999999999999999999999999999999999999999764 55555
Q ss_pred ecc
Q 015091 159 WAS 161 (413)
Q Consensus 159 ~~~ 161 (413)
|+.
T Consensus 95 ~Ak 97 (99)
T 4fxv_A 95 YAR 97 (99)
T ss_dssp ECC
T ss_pred Eee
Confidence 553
No 47
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=6.3e-19 Score=143.77 Aligned_cols=80 Identities=33% Similarity=0.524 Sum_probs=73.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEe
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
....++|||+||+.++++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+||..|++..|+|+.|+|+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346789999999999999999999999999999999654 57999999999999999999999999999999999
Q ss_pred ccCCCC
Q 015091 353 GRSPSN 358 (413)
Q Consensus 353 ~~~~~~ 358 (413)
+++...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 987543
No 48
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-18 Score=129.67 Aligned_cols=82 Identities=21% Similarity=0.285 Sum_probs=74.6
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCc--eeCCeeEEEEeccC
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGT--QLGGQNIRLSWGRS 355 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~--~~~g~~l~v~~~~~ 355 (413)
....+++|||+||+.++++++|+++|++||.|.+|.+.++|++|||+|++.++|.+|+..|++. .|+|+.|+|.|++.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 3456789999999999999999999999999999999999999999999999999999988764 49999999999987
Q ss_pred CCCC
Q 015091 356 PSNK 359 (413)
Q Consensus 356 ~~~~ 359 (413)
+..+
T Consensus 91 ~~~~ 94 (104)
T 1wex_A 91 KRIT 94 (104)
T ss_dssp SSCC
T ss_pred cccc
Confidence 6543
No 49
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.9e-19 Score=130.81 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=72.5
Q ss_pred CCCceEEEecCCC-CCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCc--eeCCeeEEEEeccCC
Q 015091 280 PNNTTVFVGNLDS-IVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGT--QLGGQNIRLSWGRSP 356 (413)
Q Consensus 280 ~~~~~l~v~nlp~-~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~--~~~g~~l~v~~~~~~ 356 (413)
..+++|||+|||+ ++++++|+++|++||.|.+|.|.+++++|||+|++.++|.+|+..|++. .|.|+.|+|.|++..
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 4678999999999 9999999999999999999999999999999999999999999998864 599999999999864
Q ss_pred C
Q 015091 357 S 357 (413)
Q Consensus 357 ~ 357 (413)
.
T Consensus 93 ~ 93 (102)
T 1x4d_A 93 K 93 (102)
T ss_dssp T
T ss_pred C
Confidence 3
No 50
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=2.6e-18 Score=129.61 Aligned_cols=81 Identities=35% Similarity=0.595 Sum_probs=74.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCC
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 357 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 357 (413)
.....++|||+||+.++++++|+++|+.||.|.+|.+.+ ++|||+|.+.++|.+|+..||+..|+|+.|+|+|++.+.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 345678999999999999999999999999999999984 599999999999999999999999999999999998765
Q ss_pred CCC
Q 015091 358 NKQ 360 (413)
Q Consensus 358 ~~~ 360 (413)
...
T Consensus 85 ~~~ 87 (103)
T 2dgu_A 85 QKR 87 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 544
No 51
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=1.2e-18 Score=122.88 Aligned_cols=74 Identities=22% Similarity=0.236 Sum_probs=71.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEecc
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 354 (413)
.+..|||+||+..+++++|+++|.+||.|.++.+..+||||||+|.+.++|.+|++.||+.+++|+.|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999984
No 52
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=4.4e-18 Score=129.43 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=74.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCC-----eeEEEEec
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGG-----QNIRLSWG 353 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g-----~~l~v~~~ 353 (413)
....++|||+|||.++++++|+++|+.||.|.+|.|..+ ++|||+|.+.++|.+||+.||+..|+| +.|+|+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 345789999999999999999999999999999999988 999999999999999999999999999 99999999
Q ss_pred cCCCCC
Q 015091 354 RSPSNK 359 (413)
Q Consensus 354 ~~~~~~ 359 (413)
+++...
T Consensus 91 ~~~~~~ 96 (108)
T 1x4c_A 91 GPRSPS 96 (108)
T ss_dssp SCCSCC
T ss_pred CCCCCC
Confidence 875543
No 53
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=132.05 Aligned_cols=82 Identities=17% Similarity=0.274 Sum_probs=75.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhc--CceeCCeeEEEEeccCC
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN--GTQLGGQNIRLSWGRSP 356 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~~~~~ 356 (413)
...+++|||+|||+++++++|+++|+.||.|.+|.|.++|++|||+|++.++|.+|+..|+ +..|+|+.|+|.|++.+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 3467899999999999999999999999999999999999999999999999999999887 46899999999999876
Q ss_pred CCCC
Q 015091 357 SNKQ 360 (413)
Q Consensus 357 ~~~~ 360 (413)
..+.
T Consensus 108 ~~~~ 111 (119)
T 2ad9_A 108 ELKT 111 (119)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6544
No 54
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.7e-18 Score=127.41 Aligned_cols=85 Identities=27% Similarity=0.457 Sum_probs=77.3
Q ss_pred CCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEE
Q 015091 276 SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 351 (413)
Q Consensus 276 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 351 (413)
.......++|||+|||.++++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|+..|++..|+|+.|+|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 344566799999999999999999999999999999999876 7899999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 015091 352 WGRSPSNKQ 360 (413)
Q Consensus 352 ~~~~~~~~~ 360 (413)
|++.+....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cq3_A 89 NATARVMTN 97 (103)
T ss_dssp ECCSSCCCC
T ss_pred EcccCCCCC
Confidence 998765543
No 55
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.77 E-value=7.1e-19 Score=166.33 Aligned_cols=80 Identities=19% Similarity=0.389 Sum_probs=73.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEec
Q 015091 280 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 353 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 353 (413)
...++|||+||+..+|+++|+++|+.||.|+.|.|..+ ++||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999754 789999999999999999999999999999999999
Q ss_pred cCCCCC
Q 015091 354 RSPSNK 359 (413)
Q Consensus 354 ~~~~~~ 359 (413)
+.....
T Consensus 180 ~~~~~~ 185 (437)
T 3pgw_S 180 RGRTVK 185 (437)
T ss_pred CCCCCC
Confidence 876543
No 56
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=129.47 Aligned_cols=81 Identities=23% Similarity=0.465 Sum_probs=77.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccC
Q 015091 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (413)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 251 (413)
..++|||+|||.++|+++|+++| +.||.|.++.+++++.+|+++|||||+|.+.++|++|++.||+..+.|+.|+|.++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLF-SSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35689999999999999999999 89999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 015091 252 TN 253 (413)
Q Consensus 252 ~~ 253 (413)
.+
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 54
No 57
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.4e-18 Score=124.94 Aligned_cols=78 Identities=35% Similarity=0.619 Sum_probs=73.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCCC
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 358 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 358 (413)
....++|||+||+.++++++|+++|+.||.|.++.+. +++|||+|.+.++|.+|+..||+..|+|+.|+|+|++.+..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 4467899999999999999999999999999999998 68999999999999999999999999999999999987554
No 58
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=132.01 Aligned_cols=79 Identities=20% Similarity=0.254 Sum_probs=72.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
.+.++|||+||++++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|++.|||..+.++.+.|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999776554443
No 59
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.77 E-value=9.9e-18 Score=133.92 Aligned_cols=83 Identities=27% Similarity=0.465 Sum_probs=75.3
Q ss_pred CCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 015091 276 SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 349 (413)
Q Consensus 276 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 349 (413)
.......++|||+||+.++++++|+++|+.||.|.+|.+.++ +++|||+|.+.++|.+|+..||+..|+|+.|+
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 344566789999999999999999999999999999999654 67999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 015091 350 LSWGRSPSN 358 (413)
Q Consensus 350 v~~~~~~~~ 358 (413)
|+|++.+..
T Consensus 116 v~~a~~~~~ 124 (139)
T 1u6f_A 116 VALAASGHQ 124 (139)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999987544
No 60
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.77 E-value=8.2e-18 Score=134.39 Aligned_cols=84 Identities=29% Similarity=0.526 Sum_probs=75.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
....++|||+||+.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.||+..+.++ .+++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v 116 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK--RLKV 116 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC--EEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe--EEEE
Confidence 45679999999999999999999999999999999999998999999999999999999999999999999765 5555
Q ss_pred eeccCC
Q 015091 158 NWASFG 163 (413)
Q Consensus 158 ~~~~~~ 163 (413)
.++...
T Consensus 117 ~~a~~~ 122 (139)
T 1u6f_A 117 ALAASG 122 (139)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 555443
No 61
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.7e-18 Score=127.78 Aligned_cols=80 Identities=31% Similarity=0.519 Sum_probs=75.4
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCC
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 357 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 357 (413)
.....++|||+|||..+++++|+++|+.||.|.+|.+.+++++|||+|.+.++|.+|+..|++..|+|+.|+|+|++.+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999998754
No 62
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.8e-18 Score=129.55 Aligned_cols=81 Identities=31% Similarity=0.656 Sum_probs=76.1
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCC
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 357 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 357 (413)
.....++|||+||+..+++++|+++|+.||.|.+|.+..++++|||+|.+.++|.+|+..|++..|+|+.|+|+|++.+.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 015091 358 N 358 (413)
Q Consensus 358 ~ 358 (413)
.
T Consensus 101 ~ 101 (109)
T 1x4g_A 101 D 101 (109)
T ss_dssp S
T ss_pred C
Confidence 4
No 63
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5.8e-18 Score=126.22 Aligned_cols=79 Identities=20% Similarity=0.418 Sum_probs=74.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeC--CeeEEEEeccCC
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLG--GQNIRLSWGRSP 356 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~--g~~l~v~~~~~~ 356 (413)
...+++|||+||+.++++++|+++|++||.|.+|.+.+++++|||+|.+.++|.+|+..||+..|+ |+.|+|+|++++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 446689999999999999999999999999999999999999999999999999999999999999 999999999875
Q ss_pred C
Q 015091 357 S 357 (413)
Q Consensus 357 ~ 357 (413)
.
T Consensus 94 ~ 94 (97)
T 1why_A 94 P 94 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 64
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1e-17 Score=126.37 Aligned_cols=82 Identities=33% Similarity=0.572 Sum_probs=75.3
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEe
Q 015091 277 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 277 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
......++|||+|||..+++++|+++|+.||.|.+|.+.++ +++|||+|.+.++|.+|+..|++..|.|+.|+|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34456799999999999999999999999999999999764 68999999999999999999999999999999999
Q ss_pred ccCCCC
Q 015091 353 GRSPSN 358 (413)
Q Consensus 353 ~~~~~~ 358 (413)
++.+..
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987554
No 65
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.7e-18 Score=127.81 Aligned_cols=84 Identities=26% Similarity=0.423 Sum_probs=76.4
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEe
Q 015091 277 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 277 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
......++|||+||+.++++++|+++|+.||.|.+|.+..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34457789999999999999999999999999999999854 78999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 015091 353 GRSPSNKQ 360 (413)
Q Consensus 353 ~~~~~~~~ 360 (413)
++.+..+.
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 99865543
No 66
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=9.1e-18 Score=125.72 Aligned_cols=80 Identities=26% Similarity=0.403 Sum_probs=74.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEe
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
....++|||+|||.++++++|+++|+.||.|.+|.+..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999999765 48999999999999999999999999999999999
Q ss_pred ccCCCC
Q 015091 353 GRSPSN 358 (413)
Q Consensus 353 ~~~~~~ 358 (413)
++.+..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987654
No 67
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=9.8e-18 Score=127.52 Aligned_cols=82 Identities=29% Similarity=0.571 Sum_probs=75.6
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-------CcEEEEEecCHHHHHHHHHHh-cCceeCCeeE
Q 015091 277 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-------KRCGFVQFADRSCAEEALRML-NGTQLGGQNI 348 (413)
Q Consensus 277 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-------~~~afV~f~~~~~a~~a~~~l-~~~~~~g~~l 348 (413)
......++|||+|||..+++++|+++|+.||.|.+|.+.++ +++|||+|.+.++|.+|+..| |+..|+|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34556799999999999999999999999999999999776 789999999999999999999 9999999999
Q ss_pred EEEeccCCCC
Q 015091 349 RLSWGRSPSN 358 (413)
Q Consensus 349 ~v~~~~~~~~ 358 (413)
+|+|++.+..
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999987654
No 68
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-17 Score=123.43 Aligned_cols=79 Identities=27% Similarity=0.466 Sum_probs=73.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCC
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 357 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 357 (413)
.....++|||+||+.++++++|+++|+.||.|.++.+.++ +|||+|.+.++|.+|+..||+..|+|+.|+|+|++++.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 3456789999999999999999999999999999999855 99999999999999999999999999999999998754
Q ss_pred C
Q 015091 358 N 358 (413)
Q Consensus 358 ~ 358 (413)
.
T Consensus 84 ~ 84 (92)
T 2dgt_A 84 R 84 (92)
T ss_dssp S
T ss_pred C
Confidence 3
No 69
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.8e-18 Score=127.54 Aligned_cols=83 Identities=25% Similarity=0.448 Sum_probs=75.5
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEE
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 351 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 351 (413)
.....++|||+|||.++++++|+++|+.||.|.+|.+..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999654 7899999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 015091 352 WGRSPSNKQ 360 (413)
Q Consensus 352 ~~~~~~~~~ 360 (413)
|++++..+.
T Consensus 88 ~a~~~~~~~ 96 (102)
T 2cqb_A 88 LAKPMRIKE 96 (102)
T ss_dssp ECCCCCCCC
T ss_pred eCCCCCCCC
Confidence 998765543
No 70
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=2e-17 Score=127.52 Aligned_cols=84 Identities=31% Similarity=0.620 Sum_probs=76.1
Q ss_pred CCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 015091 276 SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 349 (413)
Q Consensus 276 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 349 (413)
.......++|||+||+..+++++|+++|+.||.|.+|.|.++ +++|||+|.+.++|.+|+..|++..|+|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 334456799999999999999999999999999999999765 58999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 015091 350 LSWGRSPSNK 359 (413)
Q Consensus 350 v~~~~~~~~~ 359 (413)
|+|++.+...
T Consensus 89 V~~a~~~~~~ 98 (115)
T 2dgo_A 89 TNWATRKPPA 98 (115)
T ss_dssp EEESSCCCCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 71
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=1.2e-18 Score=137.94 Aligned_cols=120 Identities=24% Similarity=0.326 Sum_probs=75.2
Q ss_pred eeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCH
Q 015091 217 GYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTD 296 (413)
Q Consensus 217 g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~ 296 (413)
-++|+++.+...+..|++.+++....++.- +.+... .......++|||+|||.++++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~----------------------~~~~~~~~~l~V~nLp~~~te 61 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRP----------------------PPDVEGMTSLKVDNLTYRTSP 61 (135)
T ss_dssp -------------------------------CCSCCS----------------------CSSGGGCCCEEEECCCSSCHH
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcCCC----------------------CCCCCCCCEEEEeCCCCCCCH
Confidence 356888889999999998888766544331 111111 122335688999999999999
Q ss_pred HHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCCCC
Q 015091 297 EHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 359 (413)
Q Consensus 297 ~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 359 (413)
++|+++|+.||.|.+|.+..+ +++|||+|.+.++|.+|+..|++..|+|+.|+|+|++.....
T Consensus 62 ~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 62 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp HHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred HHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 999999999999999999654 679999999999999999999999999999999999875543
No 72
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1e-17 Score=124.40 Aligned_cols=79 Identities=29% Similarity=0.607 Sum_probs=73.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEec
Q 015091 280 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 353 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 353 (413)
..+++|||+||+.++++++|+++|+.||.|.++.+.++ +++|||+|.+.++|.+|+..||+..|+|+.|+|+|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35689999999999999999999999999999999765 579999999999999999999999999999999999
Q ss_pred cCCCC
Q 015091 354 RSPSN 358 (413)
Q Consensus 354 ~~~~~ 358 (413)
+.+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87543
No 73
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.4e-18 Score=128.85 Aligned_cols=80 Identities=14% Similarity=0.194 Sum_probs=73.4
Q ss_pred CCCCceEEEecCCCC-CCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcC--ceeCCeeEEEEeccC
Q 015091 279 DPNNTTVFVGNLDSI-VTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNG--TQLGGQNIRLSWGRS 355 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~-~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~--~~~~g~~l~v~~~~~ 355 (413)
...+++|||+||+++ +++++|+++|+.||.|.+|.+.++|++|||+|++.++|.+|+..|++ ..|+|+.|+|.|++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 446789999999998 99999999999999999999999999999999999999999998864 569999999999986
Q ss_pred CCC
Q 015091 356 PSN 358 (413)
Q Consensus 356 ~~~ 358 (413)
+..
T Consensus 102 ~~~ 104 (112)
T 1x4f_A 102 YKK 104 (112)
T ss_dssp CSS
T ss_pred ccc
Confidence 544
No 74
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.6e-18 Score=123.51 Aligned_cols=77 Identities=34% Similarity=0.682 Sum_probs=73.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHh-cCceeCCeeEEEEecc
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRML-NGTQLGGQNIRLSWGR 354 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~~~ 354 (413)
.....++|||+|||.++++++|+++|++||.|.++.+.+++++|||+|.+.++|.+|+..| ++..++|+.|+|+|++
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 4456789999999999999999999999999999999999999999999999999999998 9999999999999985
No 75
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=124.69 Aligned_cols=81 Identities=20% Similarity=0.466 Sum_probs=73.8
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEE
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 351 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 351 (413)
.....++|||+||+.++++++|+++|+.||.|.+|.+..+ +++|||+|.+.++|.+|+. |++..|+|+.|+|+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999654 6899999999999999999 99999999999999
Q ss_pred eccCCCCC
Q 015091 352 WGRSPSNK 359 (413)
Q Consensus 352 ~~~~~~~~ 359 (413)
+++++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99876543
No 76
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.2e-18 Score=124.73 Aligned_cols=79 Identities=24% Similarity=0.330 Sum_probs=73.6
Q ss_pred CCCceEEEecCCCCCCHHHHH----HHHhcCCCeEEEEeeCC---CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEe
Q 015091 280 PNNTTVFVGNLDSIVTDEHLR----ELFSQYGQLVHVKIPAG---KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~----~~f~~~G~i~~v~~~~~---~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
...++|||+||+.++++++|+ ++|++||.|.+|.+..+ +++|||+|.+.++|.+|+..|||..|+|+.|+|++
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356899999999999999999 99999999999999866 88999999999999999999999999999999999
Q ss_pred ccCCCC
Q 015091 353 GRSPSN 358 (413)
Q Consensus 353 ~~~~~~ 358 (413)
+++...
T Consensus 87 a~~~~~ 92 (96)
T 2dgx_A 87 ATGASG 92 (96)
T ss_dssp CCCSSC
T ss_pred cCCCCC
Confidence 987544
No 77
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.3e-17 Score=125.77 Aligned_cols=81 Identities=25% Similarity=0.482 Sum_probs=74.2
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC---CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEec
Q 015091 277 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 353 (413)
Q Consensus 277 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~---~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 353 (413)
......++|||+||+.++++++|+++|+.||.|.+|.+..+ +++|||+|.+.++|.+|++.||+..|+|+.|+|+|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34456789999999999999999999999999999999764 679999999999999999999999999999999999
Q ss_pred cCCC
Q 015091 354 RSPS 357 (413)
Q Consensus 354 ~~~~ 357 (413)
+.+.
T Consensus 97 ~~~~ 100 (109)
T 1x4a_A 97 RSGR 100 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8754
No 78
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=1.7e-18 Score=136.99 Aligned_cols=126 Identities=18% Similarity=0.260 Sum_probs=83.2
Q ss_pred cEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeeeccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcce
Q 015091 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203 (413)
Q Consensus 124 g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~ 203 (413)
-++|++|.+...+..|+..+++....+... ..+ ..........++|||+||+.++++++|+++| +.||.|..
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~---~~~----~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F-~~~G~i~~ 76 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS---MSY----GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVF-EKYGRVGD 76 (135)
T ss_dssp ---------------------------------CCS----CCSCSSGGGCCCEEEECCCSSCHHHHHHHHH-GGGSCCSE
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC---CCc----CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEE
Confidence 367888899999999999888866544321 111 1222344567899999999999999999999 89999999
Q ss_pred eEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCCCCcc
Q 015091 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257 (413)
Q Consensus 204 ~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~ 257 (413)
+.++.+..+++++|||||+|.+.++|++|++.|++..+.|+.|+|.++......
T Consensus 77 v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 77 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp EECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 999999889999999999999999999999999999999999999999876543
No 79
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1e-17 Score=126.36 Aligned_cols=82 Identities=30% Similarity=0.500 Sum_probs=74.7
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEE
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 351 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 351 (413)
.....++|||+||+.++++++|+++|+.||.|.+|.+..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999754 6899999999999999999999999999999999
Q ss_pred eccCCCCC
Q 015091 352 WGRSPSNK 359 (413)
Q Consensus 352 ~~~~~~~~ 359 (413)
|++.....
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dnm_A 89 VARYGRRD 96 (103)
T ss_dssp ECSSCCSC
T ss_pred ECCcCCCC
Confidence 99875443
No 80
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=4.9e-18 Score=139.68 Aligned_cols=138 Identities=16% Similarity=0.273 Sum_probs=74.1
Q ss_pred EEeCCHHHHHHHHHhhCCcccc--CcceEeccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHH
Q 015091 221 VRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 298 (413)
Q Consensus 221 v~f~~~~~a~~a~~~l~~~~~~--g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~ 298 (413)
.+|.+.++|..++..+++.... |+.+............ .....+...............+++|||+||+..+++++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~--~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 88 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHS--YERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDE 88 (165)
T ss_dssp ---------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccC--ccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHH
Confidence 6788999999999888876554 5555444322111000 00000000000111223345678999999999999999
Q ss_pred HHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCCCCC
Q 015091 299 LRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 360 (413)
Q Consensus 299 l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 360 (413)
|+++|+.||.|..|.|..+ +++|||+|.+.++|.+||..|||..|.|+.|.|.|++.+..+.
T Consensus 89 L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 89 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 9999999999999999765 6899999999999999999999999999999999998765433
No 81
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=125.13 Aligned_cols=80 Identities=24% Similarity=0.476 Sum_probs=72.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeC---------CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 015091 280 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---------GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 350 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~---------~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 350 (413)
..+++|||+|||.++++++|+++|+.||.|.+|.+.. .+++|||+|.+.++|.+|+..||+..|+|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568999999999999999999999999999999963 3579999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 015091 351 SWGRSPSNK 359 (413)
Q Consensus 351 ~~~~~~~~~ 359 (413)
+|++.+...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 82
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.8e-17 Score=126.86 Aligned_cols=82 Identities=29% Similarity=0.461 Sum_probs=73.8
Q ss_pred CCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 015091 276 SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 349 (413)
Q Consensus 276 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 349 (413)
.......++|||+||+.++++++|+++|+.||.|.+|.|.++ +++|||+|.+.++|.+|+..|++ .|+|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 344567799999999999999999999999999999999765 57999999999999999999998 89999999
Q ss_pred EEeccCCCC
Q 015091 350 LSWGRSPSN 358 (413)
Q Consensus 350 v~~~~~~~~ 358 (413)
|+|++....
T Consensus 90 V~~a~~~~~ 98 (116)
T 2cqd_A 90 VNLAYLGAK 98 (116)
T ss_dssp EEESTTTCC
T ss_pred EEEcccCCC
Confidence 999986543
No 83
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.1e-18 Score=128.13 Aligned_cols=78 Identities=27% Similarity=0.571 Sum_probs=73.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCC
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 356 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 356 (413)
...+++|||+||+.++++++|+++|+.||.|.++.+.+++++|||+|.+.++|.+|+..|||..|+|+.|+|+|++++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 345689999999999999999999999999999999999999999999999999999999999999999999998863
No 84
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=126.69 Aligned_cols=77 Identities=17% Similarity=0.299 Sum_probs=69.2
Q ss_pred CceEEEecCCCCCCHHHHHHHHhcCC-CeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhc-CceeCCeeEEEEec
Q 015091 282 NTTVFVGNLDSIVTDEHLRELFSQYG-QLVHVKIPAG------KRCGFVQFADRSCAEEALRMLN-GTQLGGQNIRLSWG 353 (413)
Q Consensus 282 ~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~-~~~~~g~~l~v~~~ 353 (413)
+++|||+|||.++|+++|+++|+.|| .|.+|.+.++ +|+|||+|.+.++|.+|++.++ +..|+|+.|+|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 8999998654 7899999999999999999874 56799999999999
Q ss_pred cCCCC
Q 015091 354 RSPSN 358 (413)
Q Consensus 354 ~~~~~ 358 (413)
+++.+
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 85
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=126.24 Aligned_cols=82 Identities=28% Similarity=0.528 Sum_probs=75.0
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 015091 277 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 350 (413)
Q Consensus 277 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 350 (413)
......++|||+|||.++++++|+++|+.||.|.+|.+.++ +++|||+|.+.++|.+|+..||+..|+|+.|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999764 679999999999999999999999999999999
Q ss_pred EeccCCCC
Q 015091 351 SWGRSPSN 358 (413)
Q Consensus 351 ~~~~~~~~ 358 (413)
+|++.+..
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x5s_A 87 DQAGKSSD 94 (102)
T ss_dssp EEEECCCC
T ss_pred EECCCCCC
Confidence 99987654
No 86
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7e-18 Score=125.59 Aligned_cols=79 Identities=27% Similarity=0.524 Sum_probs=73.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHhcCCCeEEE-EeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEe
Q 015091 280 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV-KIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v-~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
..+++|||+|||.++++++|+++|+.||.|.++ .+.++ +++|||+|.+.++|.+|+..||+..|+|+.|+|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356899999999999999999999999999998 88664 78999999999999999999999999999999999
Q ss_pred ccCCCC
Q 015091 353 GRSPSN 358 (413)
Q Consensus 353 ~~~~~~ 358 (413)
++++..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987654
No 87
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=121.74 Aligned_cols=77 Identities=26% Similarity=0.499 Sum_probs=72.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCC
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 357 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 357 (413)
....++|||+|||.++++++|+++|+.||.|.++.+.++ +|||+|.+.++|.+|+..||+..|+|+.|+|+|++...
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 456789999999999999999999999999999999855 99999999999999999999999999999999998754
No 88
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.74 E-value=2.1e-18 Score=126.55 Aligned_cols=84 Identities=12% Similarity=0.262 Sum_probs=77.0
Q ss_pred CceEEecCCCCCCCHHHHHHHHhhhCC-CcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhC-CccccCcceEecc
Q 015091 173 DHTIFVGDLAADVTDYMLQETFRARYP-STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN-GVFCSTRPMRIGP 250 (413)
Q Consensus 173 ~~~l~v~~lp~~~~~~~l~~~f~~~~g-~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~-~~~~~g~~i~v~~ 250 (413)
+++|||+|||.++|+++|+++| +.|| .|.++++++++.++.++|||||+|.+.++|++|++.++ +..+.|+.|+|.+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F-~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQL-QSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHH-HHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHH-HHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 4689999999999999999999 8999 89999999999999999999999999999999998774 5679999999999
Q ss_pred CCCCCcc
Q 015091 251 ATNKKTV 257 (413)
Q Consensus 251 ~~~~~~~ 257 (413)
+.++...
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred cCCCCCC
Confidence 9876543
No 89
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=1.8e-17 Score=125.55 Aligned_cols=82 Identities=23% Similarity=0.481 Sum_probs=75.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCC---eeEEE
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGG---QNIRL 350 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g---~~l~v 350 (413)
....++|||+||+.++++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|+..||+..+.| +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 346799999999999999999999999999999999876 7899999999999999999999999988 99999
Q ss_pred EeccCCCCCC
Q 015091 351 SWGRSPSNKQ 360 (413)
Q Consensus 351 ~~~~~~~~~~ 360 (413)
+|++.+..+.
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999765543
No 90
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=1.2e-17 Score=120.76 Aligned_cols=76 Identities=28% Similarity=0.569 Sum_probs=71.1
Q ss_pred CceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccC
Q 015091 282 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355 (413)
Q Consensus 282 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 355 (413)
+.+|||+|||.++++++|+++|+.||.|.++.+..+ +++|||+|.+.++|.+|+..|+|..|+|+.|+|+|+++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999999765 78999999999999999999999999999999999986
Q ss_pred CC
Q 015091 356 PS 357 (413)
Q Consensus 356 ~~ 357 (413)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 91
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.6e-17 Score=122.39 Aligned_cols=79 Identities=27% Similarity=0.427 Sum_probs=72.5
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHhcC--CCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccC
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQY--GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~--G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 355 (413)
.....++|||+||+.++++++|+++|+.| |.|.++.+. +++|||+|.+.++|.+|+..||+..|+|+.|+|+|+++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 34567899999999999999999999999 999999886 56999999999999999999999999999999999987
Q ss_pred CCC
Q 015091 356 PSN 358 (413)
Q Consensus 356 ~~~ 358 (413)
+..
T Consensus 89 ~~~ 91 (99)
T 2cpd_A 89 VDK 91 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 92
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.1e-17 Score=125.18 Aligned_cols=82 Identities=30% Similarity=0.538 Sum_probs=75.0
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 015091 277 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 350 (413)
Q Consensus 277 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 350 (413)
......++|||+||+.++++++|+++|+.||.|.+|.+..+ +++|||+|.+.++|.+|+..|++..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456789999999999999999999999999999999764 579999999999999999999999999999999
Q ss_pred EeccCCCC
Q 015091 351 SWGRSPSN 358 (413)
Q Consensus 351 ~~~~~~~~ 358 (413)
+|++.+..
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99987654
No 93
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.74 E-value=8.6e-18 Score=127.72 Aligned_cols=84 Identities=11% Similarity=0.171 Sum_probs=79.7
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEecc
Q 015091 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (413)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 250 (413)
.+.++|||+||+.++++++|+++| +.||.|.++.++.+..+++++|||||+|.+.++|++|++.||+..+.|+.|+|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F-~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMC-RKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHH-HhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456799999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 015091 251 ATNKK 255 (413)
Q Consensus 251 ~~~~~ 255 (413)
+....
T Consensus 83 a~~~~ 87 (110)
T 3s8s_A 83 DIKGQ 87 (110)
T ss_dssp CSTTH
T ss_pred CCCCc
Confidence 87654
No 94
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=125.45 Aligned_cols=82 Identities=23% Similarity=0.440 Sum_probs=74.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEE
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 351 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 351 (413)
.....++|||+|||.++++++|+++|+.||.|.+|.+..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4456799999999999999999999999999999999765 5799999999999999999999999999999999
Q ss_pred eccCCCCC
Q 015091 352 WGRSPSNK 359 (413)
Q Consensus 352 ~~~~~~~~ 359 (413)
|++.+...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99876543
No 95
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=5.1e-17 Score=125.01 Aligned_cols=81 Identities=30% Similarity=0.364 Sum_probs=74.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEe
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
.....++|||+||+.++++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3456789999999999999999999999999999999765 68999999999999999999999999999999999
Q ss_pred ccCCCC
Q 015091 353 GRSPSN 358 (413)
Q Consensus 353 ~~~~~~ 358 (413)
++....
T Consensus 91 a~~~~~ 96 (114)
T 2do0_A 91 DERALP 96 (114)
T ss_dssp CSCCCC
T ss_pred cccCCC
Confidence 876443
No 96
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=1.4e-17 Score=128.95 Aligned_cols=81 Identities=25% Similarity=0.323 Sum_probs=73.8
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcce
Q 015091 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (413)
Q Consensus 76 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~ 155 (413)
....+.++|||+|||.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.||+..+.++.+.|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34567899999999999999999999999999999999999889999999999999999999999999999997655544
Q ss_pred e
Q 015091 156 R 156 (413)
Q Consensus 156 ~ 156 (413)
+
T Consensus 115 ~ 115 (118)
T 2khc_A 115 Q 115 (118)
T ss_dssp E
T ss_pred E
Confidence 4
No 97
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=1.9e-17 Score=127.59 Aligned_cols=83 Identities=25% Similarity=0.517 Sum_probs=75.0
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 015091 277 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 350 (413)
Q Consensus 277 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 350 (413)
......++|||+||+.++++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999765 479999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 015091 351 SWGRSPSNK 359 (413)
Q Consensus 351 ~~~~~~~~~ 359 (413)
+|++++...
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 999876543
No 98
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=2.1e-17 Score=127.36 Aligned_cols=86 Identities=23% Similarity=0.305 Sum_probs=76.3
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcce
Q 015091 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (413)
Q Consensus 76 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~ 155 (413)
....+.++|||+|||.++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++|++.||+..|.++ .+
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l 97 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK--RL 97 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE--EC
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCE--EE
Confidence 3455779999999999999999999999999999999999998999999999999999999999999999999664 55
Q ss_pred eeeeccCC
Q 015091 156 RLNWASFG 163 (413)
Q Consensus 156 ~~~~~~~~ 163 (413)
++.++...
T Consensus 98 ~V~~a~~~ 105 (115)
T 2cpz_A 98 KVQLKRSK 105 (115)
T ss_dssp EEECCCCS
T ss_pred EEEEcCCC
Confidence 55555433
No 99
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3.3e-17 Score=122.87 Aligned_cols=81 Identities=19% Similarity=0.347 Sum_probs=74.1
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEe
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
.....++|||+|||.++++++|+++|+.||.|.++.+..+ +++|||+|.+.++|.+|+..|++..|+|+.|+|+|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999999765 48999999999999999999999999999999999
Q ss_pred ccCCCC
Q 015091 353 GRSPSN 358 (413)
Q Consensus 353 ~~~~~~ 358 (413)
++++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 987543
No 100
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.3e-17 Score=120.91 Aligned_cols=78 Identities=24% Similarity=0.466 Sum_probs=72.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCCC
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 358 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 358 (413)
....++|||+|| ++++++|+++|+.||.|.+|.+.+.+++|||+|.+.++|.+|+..|++..|+|+.|+|+|++.+..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 345689999996 899999999999999999999999999999999999999999999999999999999999987544
No 101
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-17 Score=127.54 Aligned_cols=79 Identities=23% Similarity=0.473 Sum_probs=73.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEecc
Q 015091 280 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 354 (413)
...++|||+||+.++++++|+++|+.||.|.+|.+..+ +++|||+|.+.++|.+|+..|+|..|+|+.|+|+|++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45689999999999999999999999999999999875 4899999999999999999999999999999999998
Q ss_pred CCCC
Q 015091 355 SPSN 358 (413)
Q Consensus 355 ~~~~ 358 (413)
.+..
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7543
No 102
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=1.4e-17 Score=120.89 Aligned_cols=76 Identities=26% Similarity=0.502 Sum_probs=70.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEe
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
....++|||+|||.++++++|+++|+.||.|.++.+..+ +++|||+|.+.++|.+|+..|||..|+|+.|+|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999999543 78999999999999999999999999999999999
Q ss_pred cc
Q 015091 353 GR 354 (413)
Q Consensus 353 ~~ 354 (413)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 103
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=124.33 Aligned_cols=87 Identities=44% Similarity=0.858 Sum_probs=78.2
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceE-EEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcc-
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVV-AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN- 154 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~-~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~- 154 (413)
...+.++|||+|||.++++++|+++|+.||.|. +|++++++.+++++|||||+|.+.++|++|++.||+..+.++...
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345789999999999999999999999999999 999999999999999999999999999999999999999877633
Q ss_pred -eeeeeccCC
Q 015091 155 -FRLNWASFG 163 (413)
Q Consensus 155 -~~~~~~~~~ 163 (413)
+++.|+...
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 667766544
No 104
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.8e-17 Score=124.58 Aligned_cols=82 Identities=28% Similarity=0.500 Sum_probs=74.7
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhc------CceeCC
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLN------GTQLGG 345 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~------~~~~~g 345 (413)
.....++|||+|||.++++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|+..|+ +..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 4456789999999999999999999999999999999744 7899999999999999999999 999999
Q ss_pred eeEEEEeccCCCCC
Q 015091 346 QNIRLSWGRSPSNK 359 (413)
Q Consensus 346 ~~l~v~~~~~~~~~ 359 (413)
+.|+|.|++++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999876543
No 105
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=1.3e-17 Score=130.88 Aligned_cols=82 Identities=23% Similarity=0.421 Sum_probs=74.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEE
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 351 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 351 (413)
.....++|||+||+.++++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3445789999999999999999999999999999999765 7899999999999999999999999999999999
Q ss_pred eccCCCCC
Q 015091 352 WGRSPSNK 359 (413)
Q Consensus 352 ~~~~~~~~ 359 (413)
|++.+...
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99875543
No 106
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=123.50 Aligned_cols=79 Identities=14% Similarity=0.310 Sum_probs=72.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEE--------EEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCC
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVA--------VKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~--------~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 149 (413)
+...++|||+|||.++++++|+++|+.||.|.+ |+++.++.+|+++|||||+|.+.++|.+|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 456789999999999999999999999999999 999999989999999999999999999999999999997
Q ss_pred CCCccee
Q 015091 150 NGEQNFR 156 (413)
Q Consensus 150 ~~~~~~~ 156 (413)
++.+.|+
T Consensus 90 g~~l~V~ 96 (99)
T 2la6_A 90 GNPIKVS 96 (99)
T ss_dssp SSBCEEE
T ss_pred CcEEEEE
Confidence 6554443
No 107
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.9e-18 Score=124.46 Aligned_cols=79 Identities=25% Similarity=0.447 Sum_probs=70.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCC-eEEEEeeCCCcEEEEEecCHHHHHHHHHHhcC-ceeCCeeEEEEeccCC
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQ-LVHVKIPAGKRCGFVQFADRSCAEEALRMLNG-TQLGGQNIRLSWGRSP 356 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~-~~~~g~~l~v~~~~~~ 356 (413)
....++|||+||+.++++++|+++|++||. |..+.+ ..+++|||+|.+.++|.+|+..||+ ..|+|+.|+|+|++++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 345689999999999999999999999999 555544 5689999999999999999999999 9999999999999875
Q ss_pred CC
Q 015091 357 SN 358 (413)
Q Consensus 357 ~~ 358 (413)
..
T Consensus 84 ~~ 85 (93)
T 2cqh_A 84 KL 85 (93)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 108
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=125.29 Aligned_cols=81 Identities=31% Similarity=0.441 Sum_probs=74.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhc-CCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCce-eCCeeEEEE
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQ-YGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQ-LGGQNIRLS 351 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~~~~~-----~~~afV~f~~~~~a~~a~~~l~~~~-~~g~~l~v~ 351 (413)
....++|||+||+.++++++|+++|+. ||.|.+|.+..+ +++|||+|.+.++|.+|+..|++.. |+|+.|+|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 346689999999999999999999999 999999999765 7899999999999999999999999 999999999
Q ss_pred eccCCCCC
Q 015091 352 WGRSPSNK 359 (413)
Q Consensus 352 ~~~~~~~~ 359 (413)
|++.+...
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99875543
No 109
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.73 E-value=4.3e-18 Score=147.19 Aligned_cols=75 Identities=23% Similarity=0.361 Sum_probs=69.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcCC--CeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEe
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQYG--QLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~G--~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
..++|||+||+.++++++|+++|+.|| .|++|.|.++ ++||||+|.+.++|.+||..||+..|+|+.|+|+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 9999999755 58999999999999999999999999999999999
Q ss_pred ccC
Q 015091 353 GRS 355 (413)
Q Consensus 353 ~~~ 355 (413)
++.
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 865
No 110
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.9e-17 Score=122.00 Aligned_cols=82 Identities=26% Similarity=0.512 Sum_probs=74.0
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeee
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 158 (413)
.+.++|||+|||.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.||+..+.++.+ ++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l--~V~ 80 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM--RVG 80 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCC--EEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEE--EEE
Confidence 467899999999999999999999999999999999999899999999999999999999999999999976554 444
Q ss_pred eccC
Q 015091 159 WASF 162 (413)
Q Consensus 159 ~~~~ 162 (413)
++..
T Consensus 81 ~a~~ 84 (95)
T 2dnz_A 81 HVTE 84 (95)
T ss_dssp ESSC
T ss_pred Eccc
Confidence 4443
No 111
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.73 E-value=2.3e-17 Score=122.69 Aligned_cols=77 Identities=26% Similarity=0.480 Sum_probs=72.1
Q ss_pred CceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccC
Q 015091 282 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355 (413)
Q Consensus 282 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 355 (413)
+++|||+||+.++++++|+++|+.||.|.++.+..+ +++|||+|.+.++|.+|+..|+|..|+|+.|+|+|+++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 578999999999999999999999999999999755 68999999999999999999999999999999999987
Q ss_pred CCC
Q 015091 356 PSN 358 (413)
Q Consensus 356 ~~~ 358 (413)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 543
No 112
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=8.2e-18 Score=136.20 Aligned_cols=79 Identities=20% Similarity=0.457 Sum_probs=70.9
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccC--ceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTG--EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G--~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
...++|||+||++++|+++|+++|+.|| .|.+|+++.|+.+|+++|||||+|.+.++|.+|++.|||..|.++.+.|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 4678999999999999999999999999 99999999999999999999999999999999999999999977554444
Q ss_pred e
Q 015091 157 L 157 (413)
Q Consensus 157 ~ 157 (413)
.
T Consensus 133 ~ 133 (156)
T 3n9u_C 133 P 133 (156)
T ss_dssp E
T ss_pred E
Confidence 3
No 113
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.73 E-value=2.5e-17 Score=125.84 Aligned_cols=77 Identities=30% Similarity=0.553 Sum_probs=71.3
Q ss_pred CCCceEEEecCCCC-CCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCCC
Q 015091 280 PNNTTVFVGNLDSI-VTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 358 (413)
Q Consensus 280 ~~~~~l~v~nlp~~-~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 358 (413)
...++|||+||+.+ +++++|+++|+.||.|.+|.+ .+++|||+|.+.++|.+|+..|++..|+|+.|+|+|++.+..
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 34589999999999 999999999999999999999 578999999999999999999999999999999999986443
No 114
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=124.66 Aligned_cols=85 Identities=28% Similarity=0.463 Sum_probs=75.7
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
.....++|||+|||.++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.||+..+.++. ++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--l~ 88 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP--IR 88 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB--CE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE--EE
Confidence 4567899999999999999999999999999999999999989999999999999999999999999999997654 55
Q ss_pred eeeccCC
Q 015091 157 LNWASFG 163 (413)
Q Consensus 157 ~~~~~~~ 163 (413)
+.++...
T Consensus 89 v~~a~~~ 95 (105)
T 1x5u_A 89 VNKASAH 95 (105)
T ss_dssp EEETTTT
T ss_pred EEECCCC
Confidence 5555433
No 115
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.5e-17 Score=123.05 Aligned_cols=78 Identities=31% Similarity=0.512 Sum_probs=71.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEE
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 351 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 351 (413)
....++|||+||+.++++++|+++|+.|| |.+|.|..+ +++|||+|.+.++|.+|+ .|++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34668999999999999999999999999 999999654 679999999999999999 899999999999999
Q ss_pred eccCCCC
Q 015091 352 WGRSPSN 358 (413)
Q Consensus 352 ~~~~~~~ 358 (413)
+++.+..
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987544
No 116
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.3e-17 Score=121.39 Aligned_cols=78 Identities=35% Similarity=0.539 Sum_probs=72.0
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 015091 277 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 350 (413)
Q Consensus 277 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 350 (413)
......++|||+|||.++++++|+++|+.||.|.++.+..+ +++|||+|.+.++|.+|++.||+..|+|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34456789999999999999999999999999999999654 679999999999999999999999999999999
Q ss_pred Eecc
Q 015091 351 SWGR 354 (413)
Q Consensus 351 ~~~~ 354 (413)
+|++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 117
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=3.4e-17 Score=124.23 Aligned_cols=82 Identities=23% Similarity=0.476 Sum_probs=74.2
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcce
Q 015091 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (413)
Q Consensus 76 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~ 155 (413)
......++|||+|||.++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.|||..+.++.+.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34567899999999999999999999999999999999999989999999999999999999999999999997755444
Q ss_pred ee
Q 015091 156 RL 157 (413)
Q Consensus 156 ~~ 157 (413)
..
T Consensus 101 ~~ 102 (108)
T 2jrs_A 101 GH 102 (108)
T ss_dssp EC
T ss_pred EE
Confidence 43
No 118
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.73 E-value=9.5e-18 Score=123.45 Aligned_cols=76 Identities=17% Similarity=0.367 Sum_probs=68.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHhcCCC--eEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCc----eeCCee
Q 015091 280 PNNTTVFVGNLDSIVTDEHLRELFSQYGQ--LVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGT----QLGGQN 347 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~--i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~----~~~g~~ 347 (413)
..-.+|||+||+.++|+++|+++|++||. |.+|++.++ ||||||+|.+.++|.+|++.||+. .|+||.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34578999999999999999999999995 568888654 789999999999999999999997 499999
Q ss_pred EEEEeccC
Q 015091 348 IRLSWGRS 355 (413)
Q Consensus 348 l~v~~~~~ 355 (413)
|.|+||++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999985
No 119
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=127.14 Aligned_cols=77 Identities=25% Similarity=0.393 Sum_probs=73.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCC
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 357 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 357 (413)
..++|||+|||.++++++|+++|++||.|.+|.+.+++++|||+|.+.++|.+|+..|||..|+|+.|.|+|++...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999998643
No 120
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4e-17 Score=121.23 Aligned_cols=83 Identities=20% Similarity=0.344 Sum_probs=74.8
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
.+.+.++|||+|||.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.||+..+.++ .++
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~ 88 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR--RIR 88 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE--EEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE--EEE
Confidence 456789999999999999999999999999999999999998999999999999999999999999999999664 455
Q ss_pred eeecc
Q 015091 157 LNWAS 161 (413)
Q Consensus 157 ~~~~~ 161 (413)
+.++.
T Consensus 89 v~~a~ 93 (95)
T 2cqc_A 89 VSGPS 93 (95)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 55443
No 121
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=3.2e-17 Score=119.90 Aligned_cols=77 Identities=34% Similarity=0.600 Sum_probs=71.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeC-------CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEec
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-------GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 353 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~-------~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 353 (413)
..++|||+||+.++++++|+++|+.||.|.++.+.. .+++|||+|.+.++|.+|+..|||..|+|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 458899999999999999999999999999999853 5789999999999999999999999999999999999
Q ss_pred cCCC
Q 015091 354 RSPS 357 (413)
Q Consensus 354 ~~~~ 357 (413)
+++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 122
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=3.1e-17 Score=128.59 Aligned_cols=81 Identities=19% Similarity=0.326 Sum_probs=73.8
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
.+.+.++|||+|||.++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.||+..|.++.+.|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678999999999999999999999999999999999999899999999999999999999999999999976554444
Q ss_pred e
Q 015091 157 L 157 (413)
Q Consensus 157 ~ 157 (413)
.
T Consensus 122 ~ 122 (129)
T 2kxn_B 122 F 122 (129)
T ss_dssp C
T ss_pred E
Confidence 3
No 123
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=124.74 Aligned_cols=83 Identities=24% Similarity=0.374 Sum_probs=75.1
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
...+.++|||+|||.++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.||+..+.++.+ +
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l--~ 86 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL--R 86 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC--E
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE--E
Confidence 45678999999999999999999999999999999999999899999999999999999999999999999977554 4
Q ss_pred eeecc
Q 015091 157 LNWAS 161 (413)
Q Consensus 157 ~~~~~ 161 (413)
+.++.
T Consensus 87 V~~a~ 91 (103)
T 2dnm_A 87 VQVAR 91 (103)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 44444
No 124
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.2e-17 Score=121.51 Aligned_cols=82 Identities=18% Similarity=0.326 Sum_probs=73.5
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
.....++|||+|||.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++ +++..+.++.+ +
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l--~ 82 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKV--E 82 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBC--E
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEE--E
Confidence 34578999999999999999999999999999999999999899999999999999999999998 99999976554 4
Q ss_pred eeecc
Q 015091 157 LNWAS 161 (413)
Q Consensus 157 ~~~~~ 161 (413)
+.++.
T Consensus 83 V~~a~ 87 (99)
T 2dgs_A 83 VKRAE 87 (99)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 44444
No 125
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=120.67 Aligned_cols=81 Identities=28% Similarity=0.585 Sum_probs=72.2
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeee
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 158 (413)
.+.++|||+|||.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.||+..+.++ .+++.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~v~ 81 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR--QIRTN 81 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe--EEEEE
Confidence 4678999999999999999999999999999999999988999999999999999999999999999999765 44555
Q ss_pred ecc
Q 015091 159 WAS 161 (413)
Q Consensus 159 ~~~ 161 (413)
++.
T Consensus 82 ~a~ 84 (87)
T 3bs9_A 82 WAT 84 (87)
T ss_dssp EEC
T ss_pred ecC
Confidence 443
No 126
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.2e-17 Score=125.23 Aligned_cols=82 Identities=26% Similarity=0.475 Sum_probs=74.1
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeE--------EEEeeCC------CcEEEEEecCHHHHHHHHHHhcCce
Q 015091 277 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLV--------HVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQ 342 (413)
Q Consensus 277 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--------~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~ 342 (413)
......++|||+||+.++++++|+++|+.||.|. .|.+..+ +++|||+|.+.++|.+|+..||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3445679999999999999999999999999998 6888655 6899999999999999999999999
Q ss_pred eCCeeEEEEeccCCCC
Q 015091 343 LGGQNIRLSWGRSPSN 358 (413)
Q Consensus 343 ~~g~~l~v~~~~~~~~ 358 (413)
|+|+.|+|+|++.+..
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999987544
No 127
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=3.9e-17 Score=123.92 Aligned_cols=87 Identities=20% Similarity=0.369 Sum_probs=76.8
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcC-CCCCcce
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM-PNGEQNF 155 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~-~~~~~~~ 155 (413)
...+.++|||+|||.++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.||+..+ .+....+
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 456789999999999999999999999999999999999998999999999999999999999999999875 3445666
Q ss_pred eeeeccCC
Q 015091 156 RLNWASFG 163 (413)
Q Consensus 156 ~~~~~~~~ 163 (413)
++.++...
T Consensus 89 ~v~~a~~~ 96 (106)
T 2dgp_A 89 QVKPADSE 96 (106)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 66666544
No 128
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.72 E-value=7.4e-18 Score=123.66 Aligned_cols=77 Identities=18% Similarity=0.455 Sum_probs=69.1
Q ss_pred ceeeecCCCCCCCHHHHHHHhhccC--ceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeee
Q 015091 82 RTLWIGDLQYWMDETYLNTCFAHTG--EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (413)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G--~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 158 (413)
.+|||+||++++|+++|+++|+.|| .|.+|+++.++.+|+++|||||+|.+.++|++|++.|||..+.++.+.|+..
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 5799999999999999999999999 9999999999999999999999999999999999999999997766655543
No 129
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.72 E-value=9e-17 Score=121.67 Aligned_cols=86 Identities=21% Similarity=0.368 Sum_probs=75.4
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCC-CCcce
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN-GEQNF 155 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~-~~~~~ 155 (413)
...+.++|||+|||.++++++|+++|+.||.|.+|+++.++ +++++|||||+|.+.++|.+|++.||+..+.+ ....+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34568999999999999999999999999999999999998 79999999999999999999999999999876 12556
Q ss_pred eeeeccCC
Q 015091 156 RLNWASFG 163 (413)
Q Consensus 156 ~~~~~~~~ 163 (413)
++.++...
T Consensus 90 ~V~~a~~~ 97 (105)
T 2dnh_A 90 VVKFADTD 97 (105)
T ss_dssp EEEESCSS
T ss_pred EEEECccC
Confidence 66666544
No 130
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.3e-17 Score=123.89 Aligned_cols=78 Identities=27% Similarity=0.485 Sum_probs=71.6
Q ss_pred CCCCceEEEecCCC-CCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCC
Q 015091 279 DPNNTTVFVGNLDS-IVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 357 (413)
Q Consensus 279 ~~~~~~l~v~nlp~-~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 357 (413)
...+++|||+|||. .+++++|+++|+.||.|.++.+. +++|||+|.+.++|.+|+..|++..+.|+.|+|+|++.+.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 45678999999998 99999999999999999999996 6899999999999999999999999999999999998754
Q ss_pred C
Q 015091 358 N 358 (413)
Q Consensus 358 ~ 358 (413)
.
T Consensus 85 ~ 85 (96)
T 2kvi_A 85 R 85 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 131
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=1.5e-17 Score=125.95 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=70.6
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcCC-CeEEEEee--CCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCC
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQYG-QLVHVKIP--AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 356 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~v~~~--~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 356 (413)
..++|||+|||.++++++|+++|+.|| .|..+.+. +.+|+|||+|.+.++|.+|+..|||..|+|+.|+|++++.+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 468999999999999999999999999 89999995 45899999999999999999999999999999999998754
No 132
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.3e-17 Score=122.03 Aligned_cols=84 Identities=15% Similarity=0.262 Sum_probs=75.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
..+.++|||+|||.++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.||+..+.++ .+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~V 82 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR--MLHV 82 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSC--EEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCc--EEEE
Confidence 45789999999999999999999999999999999999988999999999999999999999999999999664 5555
Q ss_pred eeccCC
Q 015091 158 NWASFG 163 (413)
Q Consensus 158 ~~~~~~ 163 (413)
.++...
T Consensus 83 ~~a~~~ 88 (99)
T 1whw_A 83 LPSTIK 88 (99)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 555444
No 133
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.9e-17 Score=123.78 Aligned_cols=78 Identities=18% Similarity=0.311 Sum_probs=72.4
Q ss_pred CCCceEEE--ecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCcee-----CCeeEEEEe
Q 015091 280 PNNTTVFV--GNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQL-----GGQNIRLSW 352 (413)
Q Consensus 280 ~~~~~l~v--~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~-----~g~~l~v~~ 352 (413)
..+++||| +||+.++++++|+++|++||.|.+|.+..+|+||||+|.+.++|.+|+..|||++| .|+.|.|.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 45688999 77999999999999999999999999999999999999999999999999999998 789999999
Q ss_pred ccCCC
Q 015091 353 GRSPS 357 (413)
Q Consensus 353 ~~~~~ 357 (413)
++.-.
T Consensus 103 a~~~p 107 (114)
T 2cq2_A 103 VEKVQ 107 (114)
T ss_dssp ESCCC
T ss_pred cccCc
Confidence 88543
No 134
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=5e-17 Score=120.78 Aligned_cols=77 Identities=26% Similarity=0.455 Sum_probs=71.6
Q ss_pred CCCCCceEEEecCCC-CCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCC
Q 015091 278 DDPNNTTVFVGNLDS-IVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 356 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~-~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 356 (413)
....+++|||+||+. ++++++|+++|+.||.|.++.+. +++|||+|.+.++|.+|+..|+|..++|+.|+|+|++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 445679999999998 99999999999999999999995 789999999999999999999999999999999998864
No 135
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.72 E-value=2.6e-17 Score=121.48 Aligned_cols=80 Identities=33% Similarity=0.530 Sum_probs=73.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEecc
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 354 (413)
....++|||+|||.++++++|+++|+.||.|.++.+.++ +++|||+|.+.++|.+|+..|++..|+|+.|+|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 346789999999999999999999999999999999763 6899999999999999999999999999999999998
Q ss_pred CCCC
Q 015091 355 SPSN 358 (413)
Q Consensus 355 ~~~~ 358 (413)
++..
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7543
No 136
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=1.6e-17 Score=136.52 Aligned_cols=128 Identities=18% Similarity=0.272 Sum_probs=80.1
Q ss_pred EEEcCHHHHHHHHHHhCCCcCCCCCcceeeeeccCC----------------CCCCCCCCCCceEEecCCCCCCCHHHHH
Q 015091 128 IEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFG----------------AGEKRDDTPDHTIFVGDLAADVTDYMLQ 191 (413)
Q Consensus 128 V~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~l~v~~lp~~~~~~~l~ 191 (413)
.+|.+.++|..|+..|++.....+....+..+.... ..........++|||+||+.++++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 789999999999999988776544444443332111 0111234456789999999999999999
Q ss_pred HHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCCCCc
Q 015091 192 ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256 (413)
Q Consensus 192 ~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 256 (413)
++| +.||.|..|.++.+..++.++|||||+|.+.++|.+|++.|++..|.|+.|.|.++..+..
T Consensus 91 ~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKF-CDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHH-GGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHh-hcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 999 8999999999999998999999999999999999999999999999999999999877654
No 137
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.72 E-value=2.7e-17 Score=124.74 Aligned_cols=80 Identities=25% Similarity=0.514 Sum_probs=73.1
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCC
Q 015091 277 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 356 (413)
Q Consensus 277 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 356 (413)
......++|||+||+.++++++|+++|+.||.|.++.+. +++|||+|.+.++|.+|+..|+|..|+|+.|+|+|++.+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 345677999999999999999999999999999999998 889999999999999999999999999999999999875
Q ss_pred CC
Q 015091 357 SN 358 (413)
Q Consensus 357 ~~ 358 (413)
..
T Consensus 104 ~~ 105 (108)
T 2jvo_A 104 AK 105 (108)
T ss_dssp C-
T ss_pred CC
Confidence 44
No 138
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=4.8e-17 Score=123.39 Aligned_cols=82 Identities=21% Similarity=0.447 Sum_probs=74.4
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCcee---CCee
Q 015091 277 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQL---GGQN 347 (413)
Q Consensus 277 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~---~g~~ 347 (413)
......++|||+||+.++++++|+++|+.||.|.+|.+..+ +++|||+|.+.++|.+|+..||+..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 34456789999999999999999999999999999999764 68999999999999999999999997 8999
Q ss_pred EEEEeccCCCC
Q 015091 348 IRLSWGRSPSN 358 (413)
Q Consensus 348 l~v~~~~~~~~ 358 (413)
|+|+|++.+..
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999987544
No 139
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.72 E-value=1.2e-17 Score=124.93 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=72.2
Q ss_pred CCCcceeeecCCCC------CCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCC-
Q 015091 78 PGEIRTLWIGDLQY------WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN- 150 (413)
Q Consensus 78 ~~~~~~l~v~~lp~------~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~- 150 (413)
....++|||+|||. ++++++|+++|++||.|.+|++++++.||+++|||||+|.+.++|.+|++.|||..+.+
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34578999999999 99999999999999999999999999999999999999999999999999999999976
Q ss_pred CCccee
Q 015091 151 GEQNFR 156 (413)
Q Consensus 151 ~~~~~~ 156 (413)
+.+.+.
T Consensus 83 r~l~V~ 88 (100)
T 3ns6_A 83 HRLFLY 88 (100)
T ss_dssp CBCEEE
T ss_pred eEEEEE
Confidence 544443
No 140
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=125.52 Aligned_cols=81 Identities=27% Similarity=0.495 Sum_probs=74.6
Q ss_pred CCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEE
Q 015091 276 SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 351 (413)
Q Consensus 276 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 351 (413)
.......++|||+||+.++++++|+++|+.||.|.++.+..+ +++|||+|.+.++|.+|+..|+|..|+|+.|+|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 344556789999999999999999999999999999999765 7899999999999999999999999999999999
Q ss_pred eccCC
Q 015091 352 WGRSP 356 (413)
Q Consensus 352 ~~~~~ 356 (413)
+++++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99864
No 141
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.72 E-value=1.1e-16 Score=123.41 Aligned_cols=93 Identities=34% Similarity=0.583 Sum_probs=85.0
Q ss_pred CCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCc
Q 015091 165 GEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244 (413)
Q Consensus 165 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 244 (413)
....+....++|||+||+.++++++|+++| +.||.|..+.++.+..++.++|||||+|.+.++|++|++.|++..+.|+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (115)
T 2dgo_A 7 GQKKDTSNHFHVFVGDLSPEITTEDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 85 (115)
T ss_dssp SSCCCSTTCEEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 344556778899999999999999999999 8999999999999988999999999999999999999999999999999
Q ss_pred ceEeccCCCCCccC
Q 015091 245 PMRIGPATNKKTVS 258 (413)
Q Consensus 245 ~i~v~~~~~~~~~~ 258 (413)
.|+|.++..+....
T Consensus 86 ~l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 86 QIRTNWATRKPPAP 99 (115)
T ss_dssp ECEEEESSCCCCCS
T ss_pred EEEEEEccCCCCCC
Confidence 99999998876543
No 142
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=124.16 Aligned_cols=76 Identities=33% Similarity=0.492 Sum_probs=72.1
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCCC
Q 015091 283 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 358 (413)
Q Consensus 283 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 358 (413)
++|||+|||.++++++|+++|+.||.|.++.+..+ +++|||+|.+.++|.+|+..|++..|+|+.|+|+|++.+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 47999999999999999999999999999999987 99999999999999999999999999999999999987653
No 143
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=122.00 Aligned_cols=78 Identities=41% Similarity=0.556 Sum_probs=72.5
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEe
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
.....++|||+|||..+++++|+++|+.||.|.+|.+..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|+|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 3456689999999999999999999999999999999765 68999999999999999999999999999999999
Q ss_pred ccC
Q 015091 353 GRS 355 (413)
Q Consensus 353 ~~~ 355 (413)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 874
No 144
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.7e-17 Score=124.31 Aligned_cols=78 Identities=22% Similarity=0.395 Sum_probs=72.2
Q ss_pred CCCceEEEecCCCCCCHHHHH---HHHhcCCCeEEEEeeCCC---------cEEEEEecCHHHHHHHHHHhcCceeCCee
Q 015091 280 PNNTTVFVGNLDSIVTDEHLR---ELFSQYGQLVHVKIPAGK---------RCGFVQFADRSCAEEALRMLNGTQLGGQN 347 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~---~~f~~~G~i~~v~~~~~~---------~~afV~f~~~~~a~~a~~~l~~~~~~g~~ 347 (413)
...++|||+|||.++++++|+ ++|++||.|.+|.+.+++ ++|||+|.+.++|.+|+..||+..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 356889999999999999999 999999999999997553 69999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 015091 348 IRLSWGRSPS 357 (413)
Q Consensus 348 l~v~~~~~~~ 357 (413)
|+|+|++++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998754
No 145
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=7.2e-17 Score=121.01 Aligned_cols=82 Identities=16% Similarity=0.364 Sum_probs=73.7
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
...+.++|||+|||.++|+++|+++|+.||.|.+|+++.++ +++++|||||+|.+.++|.+|++.||+..+.++ .++
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~ 89 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKEN--IIK 89 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSC--EEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCE--EEE
Confidence 34567899999999999999999999999999999999998 899999999999999999999999999999664 455
Q ss_pred eeecc
Q 015091 157 LNWAS 161 (413)
Q Consensus 157 ~~~~~ 161 (413)
+.++.
T Consensus 90 v~~a~ 94 (100)
T 2do4_A 90 VAISN 94 (100)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 55554
No 146
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.2e-17 Score=122.81 Aligned_cols=80 Identities=19% Similarity=0.324 Sum_probs=73.1
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
..+.++|||+|||.++++++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+|++.||+..+.++.+.|..
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999765544443
No 147
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=7.8e-17 Score=121.49 Aligned_cols=79 Identities=22% Similarity=0.393 Sum_probs=71.5
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEE
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 351 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 351 (413)
.....++|||+|||.++++++|+++|+.|| |.+|.+..+ +++|||+|.+.++|.+|+ .|++..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345678999999999999999999999997 999999755 579999999999999999 899999999999999
Q ss_pred eccCCCC
Q 015091 352 WGRSPSN 358 (413)
Q Consensus 352 ~~~~~~~ 358 (413)
|++.+..
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9987544
No 148
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=9.5e-17 Score=121.31 Aligned_cols=80 Identities=25% Similarity=0.435 Sum_probs=72.7
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhc-cCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCc-CCCCCcc
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAH-TGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTP-MPNGEQN 154 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~-~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~-~~~~~~~ 154 (413)
.....++|||+|||.++|+++|+++|+. ||.|.+|++++++ +++++|||||+|.+.++|.+|++.|++.. +.++.+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4466899999999999999999999999 9999999999998 89999999999999999999999999999 8776544
Q ss_pred eee
Q 015091 155 FRL 157 (413)
Q Consensus 155 ~~~ 157 (413)
|..
T Consensus 84 v~~ 86 (104)
T 2dhg_A 84 LSV 86 (104)
T ss_dssp CCB
T ss_pred EEE
Confidence 444
No 149
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=122.85 Aligned_cols=82 Identities=13% Similarity=0.295 Sum_probs=75.3
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHhhhCCC--cceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCc----cccCc
Q 015091 171 TPDHTIFVGDLAADVTDYMLQETFRARYPS--TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV----FCSTR 244 (413)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~--v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~----~~~g~ 244 (413)
..-++|||+||++++|+++|+++| +.||. +.+|++++|+.+++++|||||+|.+.++|.+|++.|++. .++|+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F-~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTAL-SPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHS-TTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHH-HhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 445699999999999999999999 89995 678999999999999999999999999999999999986 48999
Q ss_pred ceEeccCCC
Q 015091 245 PMRIGPATN 253 (413)
Q Consensus 245 ~i~v~~~~~ 253 (413)
.|.|+++..
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 150
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.5e-17 Score=121.75 Aligned_cols=80 Identities=21% Similarity=0.474 Sum_probs=73.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
..+.++|||+|||.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.||+..+.++.+.|..
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45689999999999999999999999999999999999998999999999999999999999999999999775554444
No 151
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=2.2e-17 Score=121.13 Aligned_cols=82 Identities=20% Similarity=0.270 Sum_probs=72.7
Q ss_pred ceEEecCCCCCCCHHHHHHHHhhhCC--CcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccC
Q 015091 174 HTIFVGDLAADVTDYMLQETFRARYP--STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (413)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~~~~g--~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 251 (413)
.+|||+||+.++++++|+++| +.|| .|.++.++.++.+|+++|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F-~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAV-HSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHH-HTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHH-HHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 479999999999999999999 8999 9999999999999999999999999999999999999999999999999998
Q ss_pred CCCCc
Q 015091 252 TNKKT 256 (413)
Q Consensus 252 ~~~~~ 256 (413)
.....
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87543
No 152
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=2.6e-17 Score=119.53 Aligned_cols=78 Identities=19% Similarity=0.377 Sum_probs=71.8
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcce
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~ 155 (413)
..+.++|||+|||.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.||+..+.++.+.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 81 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 81 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 456899999999999999999999999999999999999889999999999999999999999999999996654443
No 153
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-16 Score=121.55 Aligned_cols=85 Identities=19% Similarity=0.481 Sum_probs=75.4
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEec-CCCCCcccEEEEEEcCHHHHHHHHHHh-CCCcCCCCCcc
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRN-KQTGQIEGYGFIEFISRAGAERVLQTF-NGTPMPNGEQN 154 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~-~~~g~~~g~afV~f~~~~~A~~a~~~l-~g~~~~~~~~~ 154 (413)
.....++|||+|||.++|+++|+++|+.||.|.+|+++++ +.+++++|||||+|.+.++|.+|++.| |+..+.++ .
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~--~ 88 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR--R 88 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC--B
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC--E
Confidence 4567899999999999999999999999999999999999 788999999999999999999999999 99999765 4
Q ss_pred eeeeeccCC
Q 015091 155 FRLNWASFG 163 (413)
Q Consensus 155 ~~~~~~~~~ 163 (413)
+++.++...
T Consensus 89 l~v~~a~~~ 97 (107)
T 2cph_A 89 LVLEWADSE 97 (107)
T ss_dssp CEEEECCCC
T ss_pred EEEEeCCCC
Confidence 555555433
No 154
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.2e-17 Score=121.07 Aligned_cols=80 Identities=15% Similarity=0.206 Sum_probs=68.3
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCC--CcCCCCCcc
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNG--TPMPNGEQN 154 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g--~~~~~~~~~ 154 (413)
++.+.++|||+|||+++|+++|+++|+.||.|.+|+|++++ |||||+|.+.++|.+|++.|++ ..+.+ +.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k------GfaFVeF~~~~~A~~Ai~~l~~~~~~l~G--r~ 83 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK------NQAFIEMNTEEAANTMVNYYTSVTPVLRG--QP 83 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT------TEEEEEESSHHHHHHHHHHHTTSCCEETT--EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHhccCCceECC--EE
Confidence 45678999999999999999999999999999999999764 9999999999999999998875 55654 56
Q ss_pred eeeeeccCCC
Q 015091 155 FRLNWASFGA 164 (413)
Q Consensus 155 ~~~~~~~~~~ 164 (413)
+++.++..+.
T Consensus 84 l~V~~A~~~~ 93 (105)
T 1sjq_A 84 IYIQFSNHKE 93 (105)
T ss_dssp CCBCCCSSSS
T ss_pred EEEEEcCCCC
Confidence 6666665443
No 155
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=8.7e-17 Score=123.11 Aligned_cols=85 Identities=20% Similarity=0.380 Sum_probs=75.8
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhC------CCcCCC
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN------GTPMPN 150 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~------g~~~~~ 150 (413)
...+.++|||+|||.++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.|| +..+.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999 888865
Q ss_pred CCcceeeeeccCC
Q 015091 151 GEQNFRLNWASFG 163 (413)
Q Consensus 151 ~~~~~~~~~~~~~ 163 (413)
+ .+++.++...
T Consensus 91 ~--~l~v~~a~~~ 101 (111)
T 1x4h_A 91 R--QLKVDLAVTR 101 (111)
T ss_dssp C--EEEEECCCCC
T ss_pred E--EEEEEECCCC
Confidence 4 5555555443
No 156
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.71 E-value=6.7e-17 Score=123.46 Aligned_cols=80 Identities=21% Similarity=0.434 Sum_probs=73.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEe
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
...+++|||+|||..+++++|+++|+.||.|.++.+..+ +++|||+|.+.++|.+|+..|+|..|+|+.|+|+|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 445689999999999999999999999999999999755 68999999999999999999999999999999999
Q ss_pred ccCCCC
Q 015091 353 GRSPSN 358 (413)
Q Consensus 353 ~~~~~~ 358 (413)
++.+..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987543
No 157
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=123.65 Aligned_cols=94 Identities=20% Similarity=0.320 Sum_probs=76.7
Q ss_pred ceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeeecc
Q 015091 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (413)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~ 161 (413)
++|||+|||.++|+++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|.+|++.|++..+.++.+ ++.++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l--~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRV--RVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCC--EEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEE--EEEEcc
Confidence 58999999999999999999999999999999886 55999999999999999999999999977664 444444
Q ss_pred CCCCCC------CCCCCCceEEecCCC
Q 015091 162 FGAGEK------RDDTPDHTIFVGDLA 182 (413)
Q Consensus 162 ~~~~~~------~~~~~~~~l~v~~lp 182 (413)
...... .......+|||+||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 74 GMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCcccCCCCCccccCCCceecCCCC
Confidence 332211 122336789999986
No 158
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.71 E-value=1.8e-17 Score=124.13 Aligned_cols=78 Identities=21% Similarity=0.378 Sum_probs=68.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecC-CCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNK-QTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~-~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
....++|||+||+.++++++|+++|+.|| |.+|++++++ .+|+++|||||+|.+.++|.+|+ .||+..+.++.+.|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45679999999999999999999999999 9999999998 58999999999999999999999 899999977655544
Q ss_pred e
Q 015091 157 L 157 (413)
Q Consensus 157 ~ 157 (413)
.
T Consensus 94 ~ 94 (100)
T 2j76_E 94 V 94 (100)
T ss_dssp E
T ss_pred e
Confidence 4
No 159
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.9e-17 Score=119.63 Aligned_cols=87 Identities=23% Similarity=0.408 Sum_probs=80.8
Q ss_pred CCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcc
Q 015091 166 EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (413)
Q Consensus 166 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 245 (413)
........++|||+|||.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVF-SKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 86 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHH-HTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHH-HhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 33456677899999999999999999999 89999999999999989999999999999999999999999999999999
Q ss_pred eEeccCCC
Q 015091 246 MRIGPATN 253 (413)
Q Consensus 246 i~v~~~~~ 253 (413)
|+|.++..
T Consensus 87 l~v~~a~~ 94 (95)
T 2cqc_A 87 IRVSGPSS 94 (95)
T ss_dssp EEEECCSC
T ss_pred EEEEecCC
Confidence 99998864
No 160
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.4e-17 Score=122.00 Aligned_cols=91 Identities=24% Similarity=0.355 Sum_probs=83.9
Q ss_pred CCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcc
Q 015091 166 EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (413)
Q Consensus 166 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 245 (413)
...+....++|||+||+.++++++|+++| +.||.|..+.++.+..++.++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (103)
T 2cq0_A 8 PNRRADDNATIRVTNLSEDTRETDLQELF-RPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI 86 (103)
T ss_dssp SCCCCSSSEEEEEESCCTTCCHHHHHTTS-TTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHH-HhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 34456778999999999999999999999 89999999999999889999999999999999999999999999999999
Q ss_pred eEeccCCCCCcc
Q 015091 246 MRIGPATNKKTV 257 (413)
Q Consensus 246 i~v~~~~~~~~~ 257 (413)
|+|.++..+...
T Consensus 87 l~v~~a~~~~~~ 98 (103)
T 2cq0_A 87 LNVEWAKPSTNS 98 (103)
T ss_dssp CEEEESSCCCCS
T ss_pred EEEEECCCCCCC
Confidence 999999876543
No 161
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-16 Score=119.86 Aligned_cols=82 Identities=26% Similarity=0.321 Sum_probs=70.2
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEee--CCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEecc
Q 015091 277 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP--AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354 (413)
Q Consensus 277 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~--~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 354 (413)
......++|||+|||.++++++|+++|+.||.|.-+... +.+++|||+|.+.++|.+|+..||+..|+|+.|+|+|++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 345567999999999999999999999999988322221 237899999999999999999999999999999999998
Q ss_pred CCCC
Q 015091 355 SPSN 358 (413)
Q Consensus 355 ~~~~ 358 (413)
.+..
T Consensus 90 ~~~~ 93 (101)
T 2fc9_A 90 PRGS 93 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7543
No 162
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.5e-17 Score=122.81 Aligned_cols=82 Identities=33% Similarity=0.485 Sum_probs=74.2
Q ss_pred CCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 015091 276 SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 349 (413)
Q Consensus 276 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 349 (413)
.......++|||+|||.++++++|+++|+.||.|.+|.+..+ +++|||+|.+.++|.+|+.. ++..|+|+.|+
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 334567799999999999999999999999999999999765 47999999999999999998 99999999999
Q ss_pred EEeccCCCC
Q 015091 350 LSWGRSPSN 358 (413)
Q Consensus 350 v~~~~~~~~ 358 (413)
|++++++..
T Consensus 89 V~~a~~~~~ 97 (105)
T 2dh8_A 89 PKPCTPRGM 97 (105)
T ss_dssp CCCSCCSSC
T ss_pred EEEccCCCC
Confidence 999987554
No 163
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.70 E-value=6.8e-17 Score=125.10 Aligned_cols=79 Identities=25% Similarity=0.500 Sum_probs=72.2
Q ss_pred CCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 015091 276 SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 349 (413)
Q Consensus 276 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 349 (413)
.......++|||+||+.++++++|+++|++||.|.+|.+.++ +++|||+|.+.++|.+|++.||+..|+|+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344566799999999999999999999999999999999754 68999999999999999999999999999999
Q ss_pred EEecc
Q 015091 350 LSWGR 354 (413)
Q Consensus 350 v~~~~ 354 (413)
|+|+|
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99975
No 164
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.7e-17 Score=121.11 Aligned_cols=78 Identities=14% Similarity=0.205 Sum_probs=71.1
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
....++|||+|||.++|+++|+++|+.||.|.+|++++++. |+++|||||+|.+.++|.+|++ +++..+.++.+.|..
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 44678999999999999999999999999999999999986 9999999999999999999998 899999776665554
No 165
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.70 E-value=7.6e-17 Score=116.44 Aligned_cols=81 Identities=37% Similarity=0.630 Sum_probs=77.3
Q ss_pred ceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCC
Q 015091 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (413)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 253 (413)
.+|||+|||.++++++|+++| +.||.|.++.++.+..+++++|||||+|.+.++|++|++.|++..+.|+.|+|.++..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHH-TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 589999999999999999999 8999999999999988999999999999999999999999999999999999999876
Q ss_pred CC
Q 015091 254 KK 255 (413)
Q Consensus 254 ~~ 255 (413)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 166
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=118.98 Aligned_cols=79 Identities=24% Similarity=0.476 Sum_probs=70.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeE-EEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCC
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLV-HVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 357 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~-~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 357 (413)
....++|||+||+.++++++|+++|+.||.|. .+...+.+++|||+|.+.++|.+|+..|||..|+|+.|+|+|++++.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 34578999999999999999999999999985 33334668999999999999999999999999999999999998754
No 167
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.70 E-value=5.5e-17 Score=118.34 Aligned_cols=83 Identities=35% Similarity=0.576 Sum_probs=76.5
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEecc
Q 015091 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (413)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 250 (413)
.+.++|||+||+.++++++|+++| +.||.|.++.++.+..++.++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHH-HhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 456799999999999999999999 8999999999999988999999999999999999999999999999999999999
Q ss_pred CCCC
Q 015091 251 ATNK 254 (413)
Q Consensus 251 ~~~~ 254 (413)
+..+
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8754
No 168
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.70 E-value=6e-17 Score=124.48 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=67.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCee-----EEEEeccC
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQN-----IRLSWGRS 355 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~-----l~v~~~~~ 355 (413)
..++|||+||+.++++++|+++|+.||.|.+|.|..+ ++|||+|.+.++|.+||+.||+..|+|+. |+|..++.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 4689999999999999999999999999999999887 99999999999999999999999999998 77777665
Q ss_pred C
Q 015091 356 P 356 (413)
Q Consensus 356 ~ 356 (413)
+
T Consensus 94 ~ 94 (115)
T 3beg_B 94 R 94 (115)
T ss_dssp -
T ss_pred C
Confidence 3
No 169
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.1e-17 Score=119.93 Aligned_cols=76 Identities=24% Similarity=0.372 Sum_probs=70.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcc
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~ 154 (413)
.+.++|||+|||.++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|||..+.++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 78 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK 78 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEe
Confidence 4678999999999999999999999999999999999998999999999999999999999999999998665443
No 170
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=4.6e-17 Score=125.47 Aligned_cols=105 Identities=14% Similarity=0.231 Sum_probs=87.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
+..+++|||+|||.++|+++|+++|+.||.|.+|+++++ +.++|||||+|.+.++|.+|++.|||..+.++. +++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~--l~v 79 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY--LVV 79 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCB--CEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE--EEE
Confidence 456789999999999999999999999999999999875 456899999999999999999999999997655 444
Q ss_pred eeccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCC
Q 015091 158 NWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200 (413)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~ 200 (413)
.++...... .++....++++|.++| +.||.
T Consensus 80 ~~a~~~~~~------------~~~~~~~~~~~l~~~~-~~~g~ 109 (115)
T 3lqv_A 80 LYYNANRAF------------QKMDTKKKEEQLKLLK-EKYGI 109 (115)
T ss_dssp EECCHHHHT------------TTSCHHHHHHHHHHHH-HHHCC
T ss_pred EEecCChhh------------hhhhHhHhHHHHHHHH-HHhCC
Confidence 444322111 5677888899999999 77874
No 171
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-16 Score=118.95 Aligned_cols=85 Identities=25% Similarity=0.429 Sum_probs=79.8
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcc-eeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcc---
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTK-GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP--- 245 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~-~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~--- 245 (413)
....++|||+||+.++++++|+++| +.||.|. .+.++.++.+++++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAF-ATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHH-HHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHH-HHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 4567899999999999999999999 8999999 9999999999999999999999999999999999999999999
Q ss_pred -eEeccCCCCC
Q 015091 246 -MRIGPATNKK 255 (413)
Q Consensus 246 -i~v~~~~~~~ 255 (413)
|+|.++....
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999987654
No 172
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.69 E-value=1.3e-16 Score=125.07 Aligned_cols=87 Identities=24% Similarity=0.401 Sum_probs=81.7
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceE
Q 015091 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (413)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 247 (413)
....+.++|||+||+.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|++|++.|++..|.|+.|+
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVF-SKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHH-TTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 445677899999999999999999999 8999999999999998999999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 015091 248 IGPATNKK 255 (413)
Q Consensus 248 v~~~~~~~ 255 (413)
|.++..++
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998764
No 173
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.69 E-value=7.3e-17 Score=119.96 Aligned_cols=85 Identities=25% Similarity=0.467 Sum_probs=80.0
Q ss_pred CCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccC
Q 015091 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (413)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 251 (413)
++++|||+||+.++++++|+++| +.||.|.++.++.+..++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLC-SNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHH-HTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHH-HhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 36799999999999999999999 89999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCcc
Q 015091 252 TNKKTV 257 (413)
Q Consensus 252 ~~~~~~ 257 (413)
..+...
T Consensus 80 ~~~~~~ 85 (96)
T 2x1f_A 80 SNSDIS 85 (96)
T ss_dssp SCSSGG
T ss_pred CCCCCC
Confidence 886543
No 174
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.69 E-value=1.5e-16 Score=120.94 Aligned_cols=78 Identities=24% Similarity=0.386 Sum_probs=72.2
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEE
Q 015091 277 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 351 (413)
Q Consensus 277 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 351 (413)
......++|||+||+..+++++|+++|+.||.|.+|.+..+ +++|||+|.+.++|.+|+..|++..|+|+.|+|+
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34456799999999999999999999999999999999754 7899999999999999999999999999999999
Q ss_pred ecc
Q 015091 352 WGR 354 (413)
Q Consensus 352 ~~~ 354 (413)
|+.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 175
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=2.3e-16 Score=118.87 Aligned_cols=83 Identities=19% Similarity=0.415 Sum_probs=73.3
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
.....++|||+|||.++++++|+++|+.|| |.+|++++++.+++++|||||+|.+.++|.+|+ .||+..+.++ .++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~--~l~ 86 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDR--SLR 86 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTE--ECE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCe--EEE
Confidence 345689999999999999999999999997 999999999999999999999999999999999 8999999765 455
Q ss_pred eeeccCC
Q 015091 157 LNWASFG 163 (413)
Q Consensus 157 ~~~~~~~ 163 (413)
+.++...
T Consensus 87 V~~a~~~ 93 (103)
T 2dng_A 87 VDIAEGR 93 (103)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 5555433
No 176
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.9e-17 Score=120.74 Aligned_cols=88 Identities=24% Similarity=0.396 Sum_probs=82.0
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEe
Q 015091 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 248 (413)
.....++|||+|||.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAF-IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHH-TTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHh-hccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567899999999999999999999 89999999999999889999999999999999999999999999999999999
Q ss_pred ccCCCCCcc
Q 015091 249 GPATNKKTV 257 (413)
Q Consensus 249 ~~~~~~~~~ 257 (413)
.++..+...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2cqb_A 87 NLAKPMRIK 95 (102)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999876544
No 177
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.2e-17 Score=126.06 Aligned_cols=80 Identities=16% Similarity=0.306 Sum_probs=72.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
....++|||+||+.++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|+ .||+..|.++ .+++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~--~l~V 98 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGV--PIIV 98 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTE--EEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCe--EEEE
Confidence 456789999999999999999999999999999999999988999999999999999999999 9999999665 4555
Q ss_pred eec
Q 015091 158 NWA 160 (413)
Q Consensus 158 ~~~ 160 (413)
.++
T Consensus 99 ~~a 101 (114)
T 2cq4_A 99 QAS 101 (114)
T ss_dssp EEH
T ss_pred Eec
Confidence 444
No 178
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.69 E-value=1.3e-16 Score=116.79 Aligned_cols=74 Identities=26% Similarity=0.467 Sum_probs=69.4
Q ss_pred CceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccC
Q 015091 282 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355 (413)
Q Consensus 282 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 355 (413)
.++|||+|||.++++++|+++|+.||.|.++.+..+ +++|||+|.+.++|.+|+ .||+..|+|+.|+|+++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 478999999999999999999999999999999754 789999999999999999 8999999999999999986
Q ss_pred C
Q 015091 356 P 356 (413)
Q Consensus 356 ~ 356 (413)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 179
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=1.1e-16 Score=119.27 Aligned_cols=80 Identities=25% Similarity=0.546 Sum_probs=73.3
Q ss_pred CCCCceEEEecCCCCCCHHHHH----HHHhcCCCeEEEEee---CCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEE
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLR----ELFSQYGQLVHVKIP---AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 351 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~----~~f~~~G~i~~v~~~---~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 351 (413)
...+++|||+|||.++++++|+ ++|+.||.|.+|.+. ..+++|||+|.+.++|.+|+..|||..|+|+.|+|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3467899999999999999999 999999999999997 458999999999999999999999999999999999
Q ss_pred eccCCCC
Q 015091 352 WGRSPSN 358 (413)
Q Consensus 352 ~~~~~~~ 358 (413)
|++++..
T Consensus 85 ~a~~~~~ 91 (97)
T 1nu4_A 85 YAKTDSD 91 (97)
T ss_dssp ECSSCCT
T ss_pred EccCCCc
Confidence 9987543
No 180
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.69 E-value=2.8e-16 Score=115.86 Aligned_cols=78 Identities=22% Similarity=0.388 Sum_probs=70.8
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
..+.++|||+|||.++++++|+++|+.||.|.+|++.++ +++++|||||+|.+.++|.+|++.||+..+.++.+.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456899999999999999999999999999999999984 689999999999999999999999999999776555544
No 181
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=119.09 Aligned_cols=86 Identities=28% Similarity=0.529 Sum_probs=80.5
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHhhhCCCccee-EEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGA-KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~-~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
..+++|||+|||.++++++|+++| +.||.|..+ .++.+..++.++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTF-SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHH-HTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 457899999999999999999999 899999999 999998899999999999999999999999999999999999999
Q ss_pred cCCCCCcc
Q 015091 250 PATNKKTV 257 (413)
Q Consensus 250 ~~~~~~~~ 257 (413)
++..+...
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 99876543
No 182
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.69 E-value=2.7e-16 Score=120.90 Aligned_cols=87 Identities=21% Similarity=0.437 Sum_probs=80.6
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
....++|||+||+.++++++|+++| +.||.|..+.++.+. ++.++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVF-GKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHH-HTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4556899999999999999999999 899999999999998 99999999999999999999999999999999999999
Q ss_pred cCCCCCccC
Q 015091 250 PATNKKTVS 258 (413)
Q Consensus 250 ~~~~~~~~~ 258 (413)
++.......
T Consensus 82 ~a~~~~~~~ 90 (116)
T 2fy1_A 82 QAKKPSFQS 90 (116)
T ss_dssp ECCCSSCSS
T ss_pred ECCCCCCCC
Confidence 998765443
No 183
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.69 E-value=2e-16 Score=120.04 Aligned_cols=86 Identities=30% Similarity=0.629 Sum_probs=80.8
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceE
Q 015091 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (413)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 247 (413)
......++|||+||+.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIF-EPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHH-TTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 345667899999999999999999999 8999999999999988999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 015091 248 IGPATNK 254 (413)
Q Consensus 248 v~~~~~~ 254 (413)
|.++..+
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9998765
No 184
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.69 E-value=8.7e-17 Score=119.36 Aligned_cols=81 Identities=20% Similarity=0.408 Sum_probs=72.6
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
.....++|||+|||.++++++|+++|+.||.|.+|++.+++. ++++|||||+|.+.++|.+|++.||+..+.++. ++
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--l~ 88 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP--IN 88 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE--CE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCE--EE
Confidence 456789999999999999999999999999999999999985 999999999999999999999999999997654 44
Q ss_pred eeec
Q 015091 157 LNWA 160 (413)
Q Consensus 157 ~~~~ 160 (413)
+.++
T Consensus 89 V~~a 92 (95)
T 2ywk_A 89 VSGP 92 (95)
T ss_dssp EECC
T ss_pred EEEc
Confidence 4444
No 185
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=124.12 Aligned_cols=80 Identities=18% Similarity=0.407 Sum_probs=72.2
Q ss_pred CCCCceEEEecCCCCCCHHHHH----HHHhcCCCeEEEEeeC---CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEE
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLR----ELFSQYGQLVHVKIPA---GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 351 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~----~~f~~~G~i~~v~~~~---~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 351 (413)
...+++|||+||+..+++++|+ ++|++||.|.+|.+.+ .+|+|||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3457899999999999999876 6999999999999853 58999999999999999999999999999999999
Q ss_pred eccCCCC
Q 015091 352 WGRSPSN 358 (413)
Q Consensus 352 ~~~~~~~ 358 (413)
|++.+..
T Consensus 106 ~a~~~~~ 112 (127)
T 2a3j_A 106 FSETPQS 112 (127)
T ss_dssp ECCCCCH
T ss_pred EccCcch
Confidence 9987543
No 186
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.69 E-value=9.9e-17 Score=122.51 Aligned_cols=83 Identities=18% Similarity=0.368 Sum_probs=74.6
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
...+.++|||+|||.++|+++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+|++.|||..+.++ .++
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~--~l~ 99 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ--TIQ 99 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE--ECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc--EEE
Confidence 345679999999999999999999999999999999999988999999999999999999999999999999664 455
Q ss_pred eeecc
Q 015091 157 LNWAS 161 (413)
Q Consensus 157 ~~~~~ 161 (413)
+.++.
T Consensus 100 V~~a~ 104 (110)
T 1oo0_B 100 VDWCF 104 (110)
T ss_dssp EEESE
T ss_pred EEEcc
Confidence 55544
No 187
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.69 E-value=8.7e-17 Score=118.09 Aligned_cols=80 Identities=16% Similarity=0.113 Sum_probs=69.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
..++++|||+|||.++|+++|+++|++||.|.+|++++++ |||||+|.+.++|.+|++.|++..+...++.+++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k------g~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK------RQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTT------TEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 4568999999999999999999999999999999998654 8999999999999999999998874434567777
Q ss_pred eeccCC
Q 015091 158 NWASFG 163 (413)
Q Consensus 158 ~~~~~~ 163 (413)
.+++.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 776543
No 188
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=3.1e-16 Score=122.44 Aligned_cols=87 Identities=31% Similarity=0.439 Sum_probs=80.6
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEe
Q 015091 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 248 (413)
.....++|||+||+.++++++|+++| +.||.|..+.++.+. +++++|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELF-AEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHH-HTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 45667899999999999999999999 899999999999998 9999999999999999999999999999999999999
Q ss_pred ccCCCCCcc
Q 015091 249 GPATNKKTV 257 (413)
Q Consensus 249 ~~~~~~~~~ 257 (413)
.++......
T Consensus 109 ~~a~~~~~~ 117 (124)
T 2kt5_A 109 QLVASQIDL 117 (124)
T ss_dssp EEECCTTCC
T ss_pred EEeCCCCCC
Confidence 998775443
No 189
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=122.99 Aligned_cols=84 Identities=29% Similarity=0.523 Sum_probs=74.4
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
.....++|||+|||.++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++|++.+++ .+.+ ..++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g--~~l~ 89 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG--RKAN 89 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT--EECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC--EEEE
Confidence 456789999999999999999999999999999999999998999999999999999999999999998 6755 4555
Q ss_pred eeeccCC
Q 015091 157 LNWASFG 163 (413)
Q Consensus 157 ~~~~~~~ 163 (413)
+.++...
T Consensus 90 V~~a~~~ 96 (116)
T 2cqd_A 90 VNLAYLG 96 (116)
T ss_dssp EEESTTT
T ss_pred EEEcccC
Confidence 5555443
No 190
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.69 E-value=2.7e-16 Score=117.54 Aligned_cols=83 Identities=29% Similarity=0.370 Sum_probs=78.0
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcce--------eEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCcc
Q 015091 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG--------AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~--------~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~ 240 (413)
.....++|||+||+.++++++|+++| +.||.|.. +.++.++.+++++|||||+|.+.++|++|++.|++..
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYF-KQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHH-TTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 35567899999999999999999999 89999999 9999998899999999999999999999999999999
Q ss_pred ccCcceEeccCC
Q 015091 241 CSTRPMRIGPAT 252 (413)
Q Consensus 241 ~~g~~i~v~~~~ 252 (413)
+.|+.|+|.++.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999998863
No 191
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.68 E-value=1.6e-16 Score=124.62 Aligned_cols=82 Identities=18% Similarity=0.315 Sum_probs=74.1
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
...+.++|||+|||.++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.||+..|.++.+.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34568899999999999999999999999999999999998899999999999999999999999999999976555544
Q ss_pred ee
Q 015091 157 LN 158 (413)
Q Consensus 157 ~~ 158 (413)
..
T Consensus 98 ~a 99 (126)
T 3ex7_B 98 WC 99 (126)
T ss_dssp ES
T ss_pred Ee
Confidence 43
No 192
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.68 E-value=1.4e-16 Score=121.04 Aligned_cols=80 Identities=20% Similarity=0.363 Sum_probs=72.6
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
.....++|||+|||..+|+++|+++|+.||.|.+|+++.++ +|+++|||||+|.+.++|.+|++.||+..+.++.+.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34568999999999999999999999999999999999998 89999999999999999999999999999976555444
Q ss_pred e
Q 015091 157 L 157 (413)
Q Consensus 157 ~ 157 (413)
+
T Consensus 104 ~ 104 (107)
T 3ulh_A 104 L 104 (107)
T ss_dssp E
T ss_pred E
Confidence 3
No 193
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.68 E-value=8.2e-17 Score=126.91 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=72.6
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEE--EEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCC----cCCC
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVA--VKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGT----PMPN 150 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~--~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~----~~~~ 150 (413)
.....++|||+||++++|+++|+++|+.||.|.. |+|++++.+|+++|||||+|.+. +|.+|++.||+. .+.+
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999977 99999999999999999999999 999999999999 8876
Q ss_pred CCcceeee
Q 015091 151 GEQNFRLN 158 (413)
Q Consensus 151 ~~~~~~~~ 158 (413)
+.+.|+..
T Consensus 98 r~l~V~~a 105 (131)
T 2m2b_A 98 KTINVEFA 105 (131)
T ss_dssp CCCCCEEC
T ss_pred EEEEEEEC
Confidence 65555543
No 194
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.68 E-value=1.6e-16 Score=115.99 Aligned_cols=76 Identities=18% Similarity=0.350 Sum_probs=71.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCC
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 357 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 357 (413)
..++|||+|||.++++++|+++|++| .|.++.+.+.+++|||+|.+.++|.+|+..|||..++|+.|+|+|+....
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 46889999999999999999999999 99999998889999999999999999999999999999999999987643
No 195
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.68 E-value=8.8e-17 Score=122.26 Aligned_cols=84 Identities=24% Similarity=0.383 Sum_probs=69.2
Q ss_pred CCCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcce
Q 015091 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (413)
Q Consensus 76 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~ 155 (413)
....+.++|||+||+.++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.+ +..+.+ ..+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g--~~l 96 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS--KTI 96 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT--EEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC--EEE
Confidence 34567899999999999999999999999999999999999989999999999999999999999876 467755 445
Q ss_pred eeeeccC
Q 015091 156 RLNWASF 162 (413)
Q Consensus 156 ~~~~~~~ 162 (413)
++.++..
T Consensus 97 ~V~~a~~ 103 (109)
T 2rs2_A 97 DPKVAFP 103 (109)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 5555543
No 196
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-16 Score=118.91 Aligned_cols=88 Identities=31% Similarity=0.557 Sum_probs=81.1
Q ss_pred CCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcce
Q 015091 167 KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (413)
Q Consensus 167 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 246 (413)
.......++|||+||+.++++++|+++| +.||.|..+.++.+ ++.+++||||+|.+.++|++|++.|++..+.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTT-TTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3445678899999999999999999999 89999999999988 88999999999999999999999999999999999
Q ss_pred EeccCCCCCcc
Q 015091 247 RIGPATNKKTV 257 (413)
Q Consensus 247 ~v~~~~~~~~~ 257 (413)
.|.++..+...
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2d9p_A 86 YVALAQRKEER 96 (103)
T ss_dssp EEEECSSCCCC
T ss_pred EEEEecccccC
Confidence 99999887654
No 197
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.5e-16 Score=116.82 Aligned_cols=80 Identities=20% Similarity=0.345 Sum_probs=71.4
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 015091 277 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 350 (413)
Q Consensus 277 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 350 (413)
......++|||+||+.++++++|+++|+.||.|.+|.+..+ +++|||+|.+.++|.+|+. ++..|+|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 34456789999999999999999999999999999999765 5799999999999999999 478999999999
Q ss_pred EeccCCCC
Q 015091 351 SWGRSPSN 358 (413)
Q Consensus 351 ~~~~~~~~ 358 (413)
+|++++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99987644
No 198
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-16 Score=120.40 Aligned_cols=85 Identities=25% Similarity=0.382 Sum_probs=79.8
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
...+++|||+||+.++++++|+++| +.||.|..+.++.+..++.++|||||+|.+.++|++|++.|++..+.|+.|.|.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKF-AEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-hccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 4566899999999999999999999 899999999999999899999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 015091 250 PATNKK 255 (413)
Q Consensus 250 ~~~~~~ 255 (413)
++..+.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 987653
No 199
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6e-17 Score=122.44 Aligned_cols=82 Identities=26% Similarity=0.580 Sum_probs=74.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
....++|||+|||.++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.||+..+.++. +++
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--l~v 82 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRA--LRV 82 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC--BEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcE--EEE
Confidence 456789999999999999999999999999999999999889999999999999999999999999999996654 455
Q ss_pred eecc
Q 015091 158 NWAS 161 (413)
Q Consensus 158 ~~~~ 161 (413)
.++.
T Consensus 83 ~~a~ 86 (104)
T 1p1t_A 83 DNAA 86 (104)
T ss_dssp EETT
T ss_pred EeCC
Confidence 5444
No 200
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.5e-16 Score=120.05 Aligned_cols=79 Identities=22% Similarity=0.405 Sum_probs=72.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHhcCCC-eEEEEee-------CCCcEEEEEecCHHHHHHHHHHhc--CceeCCeeEE
Q 015091 280 PNNTTVFVGNLDSIVTDEHLRELFSQYGQ-LVHVKIP-------AGKRCGFVQFADRSCAEEALRMLN--GTQLGGQNIR 349 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~v~~~-------~~~~~afV~f~~~~~a~~a~~~l~--~~~~~g~~l~ 349 (413)
...++|||+|||.++++++|+++|+.||. |.++.+. +.+++|||+|.+.++|.+|+..|+ +..|+|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35689999999999999999999999998 9999997 458899999999999999999996 5899999999
Q ss_pred EEeccCCCC
Q 015091 350 LSWGRSPSN 358 (413)
Q Consensus 350 v~~~~~~~~ 358 (413)
|+|++++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987654
No 201
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.7e-16 Score=117.22 Aligned_cols=83 Identities=27% Similarity=0.506 Sum_probs=72.8
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
.....++|||+|||.++++++|+++|+.||.|.+|++++++. .++|||||+|.+.++|.+|++.||+..+.+ ..++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~ 86 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILG--KEVK 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETT--EEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCC--CeEE
Confidence 456789999999999999999999999999999999999863 468999999999999999999999999965 5566
Q ss_pred eeeccCC
Q 015091 157 LNWASFG 163 (413)
Q Consensus 157 ~~~~~~~ 163 (413)
+.++...
T Consensus 87 V~~a~~~ 93 (103)
T 2cqi_A 87 VNWATTP 93 (103)
T ss_dssp EEECCCT
T ss_pred EEECCCC
Confidence 6666544
No 202
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=8.1e-17 Score=120.26 Aligned_cols=80 Identities=13% Similarity=0.185 Sum_probs=72.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
....++|||+|||.++++++|+++|+.||.|.++.++.++.+|+++|||||+|.+.++|++|++.||+..+.++.+.|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44578999999999999999999999999999999999988999999999999999999999999999999775544444
No 203
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=117.61 Aligned_cols=84 Identities=20% Similarity=0.293 Sum_probs=78.6
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceE
Q 015091 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (413)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 247 (413)
......++|||+|||.++++++|+++| +.||.|..+.++.+..++.++|||||+|.+.++|++|++.|++..+.|+.|+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIF-SKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHT-TTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHH-HhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 345667899999999999999999999 8999999999999988899999999999999999999999999999999999
Q ss_pred eccCC
Q 015091 248 IGPAT 252 (413)
Q Consensus 248 v~~~~ 252 (413)
|.++.
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 98863
No 204
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.68 E-value=1.1e-16 Score=116.67 Aligned_cols=78 Identities=24% Similarity=0.427 Sum_probs=69.5
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcce
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~ 155 (413)
...+.++|||+|||.++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++. ++..+.++.+.+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 84 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDP 84 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEE
Confidence 456789999999999999999999999999999999999998999999999999999999999964 777776544433
No 205
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.68 E-value=6.6e-17 Score=124.58 Aligned_cols=105 Identities=18% Similarity=0.323 Sum_probs=92.5
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
...+++|||+|||.++++++|+++| +.||.|..+.++.+ +.++|||||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIF-GKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 4567899999999999999999999 89999999999854 4569999999999999999999999999999999999
Q ss_pred cCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHHHhcCCC
Q 015091 250 PATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQ 308 (413)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~ 308 (413)
++...... .++....++++|.++|++||.
T Consensus 81 ~a~~~~~~------------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 81 YYNANRAF------------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ECCHHHHT------------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EecCChhh------------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 98764321 356677889999999999984
No 206
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.6e-16 Score=118.06 Aligned_cols=84 Identities=25% Similarity=0.453 Sum_probs=73.7
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCC-----
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG----- 151 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~----- 151 (413)
...+.++|||+|||.++|+++|+++|+.||.|.+|++++++ +++++|||||+|.+.++|.+|++.|||..+.+.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 44567899999999999999999999999999999999998 899999999999999999999999999998653
Q ss_pred -Ccceeeeecc
Q 015091 152 -EQNFRLNWAS 161 (413)
Q Consensus 152 -~~~~~~~~~~ 161 (413)
...+++.|+.
T Consensus 100 ~~~~l~v~~a~ 110 (114)
T 1x5o_A 100 PTEPLLCKFSG 110 (114)
T ss_dssp CSSCBEEEECC
T ss_pred CCCceeEEccC
Confidence 2345555544
No 207
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=5.6e-16 Score=119.14 Aligned_cols=76 Identities=18% Similarity=0.266 Sum_probs=69.1
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcE-EEEEecCHHHHHHHHHHhcCceeCC--eeEEEEeccCCCC
Q 015091 283 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC-GFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSN 358 (413)
Q Consensus 283 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~-afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~~~ 358 (413)
..|||+||++.+++++|+++|++||.|.+|.|....|+ |||+|.+.++|.+|+..|||..|.| +.|+|.|++.+..
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 34679999999999999999999999999998765686 9999999999999999999999977 6999999997654
No 208
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=4e-16 Score=115.40 Aligned_cols=77 Identities=23% Similarity=0.353 Sum_probs=68.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCc-EEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCCC
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR-CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 358 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~-~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 358 (413)
..++|||+||+.++++++|+++|+.||.|.+|.+.+..+ +|||+|.+.++|.+|+. |++..|+|+.|+|+++..+..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 457999999999999999999999999999984443322 99999999999999999 999999999999999876543
No 209
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.9e-16 Score=118.28 Aligned_cols=86 Identities=14% Similarity=0.305 Sum_probs=79.1
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCC---CCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceE
Q 015091 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRL---TGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (413)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~---~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 247 (413)
.+.++|||+||+.++++++|+++| +.||.|..+.++.+.. ++.++|||||+|.+.++|++|++.|++..+.|+.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVF-SKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 456899999999999999999999 8999999999998876 568999999999999999999999999999999999
Q ss_pred eccCCCCCcc
Q 015091 248 IGPATNKKTV 257 (413)
Q Consensus 248 v~~~~~~~~~ 257 (413)
|.++..+...
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 210
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.3e-16 Score=115.17 Aligned_cols=77 Identities=22% Similarity=0.304 Sum_probs=70.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEec
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 353 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 353 (413)
....++|||+|||.++++++|+++|+.| .|.+|.+.++ +|+|||+|.+.++|.+|+. ||+..|+|+.|+|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 4467899999999999999999999999 8999998764 6899999999999999999 9999999999999999
Q ss_pred cCCC
Q 015091 354 RSPS 357 (413)
Q Consensus 354 ~~~~ 357 (413)
+.+.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8753
No 211
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.3e-16 Score=116.50 Aligned_cols=83 Identities=22% Similarity=0.456 Sum_probs=72.2
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
.....++|||+|||.++|+++|+++|+.||.|.+|+++.++. .++|||||+|.+.++|.+|++.||+..|.++. ++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--l~ 86 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRK--IE 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEE--CE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEE--EE
Confidence 456789999999999999999999999999999999999863 48899999999999999999999999996654 55
Q ss_pred eeeccCC
Q 015091 157 LNWASFG 163 (413)
Q Consensus 157 ~~~~~~~ 163 (413)
+.++...
T Consensus 87 v~~a~~~ 93 (103)
T 2cq3_A 87 VNNATAR 93 (103)
T ss_dssp EEECCSS
T ss_pred EEEcccC
Confidence 5555433
No 212
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.5e-16 Score=117.11 Aligned_cols=80 Identities=25% Similarity=0.407 Sum_probs=68.4
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEee---CCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEecc
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP---AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~---~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 354 (413)
.....++|||+||+.++++++|+++|+.|+.|.-+... +.+++|||+|.+.++|.+|+..|++..|+|+.|+|+|++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 34567899999999999999999999988655443322 126899999999999999999999999999999999998
Q ss_pred CCC
Q 015091 355 SPS 357 (413)
Q Consensus 355 ~~~ 357 (413)
++.
T Consensus 91 ~~~ 93 (102)
T 2fc8_A 91 PKG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 213
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=5.9e-16 Score=115.91 Aligned_cols=80 Identities=14% Similarity=0.111 Sum_probs=67.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
..++++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++..+...++.+++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346789999999999999999999999999999999865 38999999999999999998877653334556667
Q ss_pred eeccCC
Q 015091 158 NWASFG 163 (413)
Q Consensus 158 ~~~~~~ 163 (413)
.++...
T Consensus 86 ~~a~~~ 91 (104)
T 1wex_A 86 NYSTSK 91 (104)
T ss_dssp EECSSS
T ss_pred EEccCc
Confidence 766544
No 214
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.67 E-value=6e-17 Score=121.17 Aligned_cols=83 Identities=20% Similarity=0.288 Sum_probs=78.4
Q ss_pred CCCceEEecCCCC------CCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccC-
Q 015091 171 TPDHTIFVGDLAA------DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST- 243 (413)
Q Consensus 171 ~~~~~l~v~~lp~------~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g- 243 (413)
..+++|||+|||. ++++++|+++| +.||.|.++.++.+..+++++|||||+|.+.++|.+|++.|++..+.|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F-~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLF-SKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHH-HTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHH-HhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 4467999999999 99999999999 899999999999999999999999999999999999999999999999
Q ss_pred cceEeccCCCC
Q 015091 244 RPMRIGPATNK 254 (413)
Q Consensus 244 ~~i~v~~~~~~ 254 (413)
+.|+|.++..+
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999998654
No 215
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.8e-16 Score=120.33 Aligned_cols=82 Identities=22% Similarity=0.477 Sum_probs=72.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCe----EEEEee--CCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEe
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQL----VHVKIP--AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i----~~v~~~--~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
...+++|||+||+.++++++|+++|+.||.| ..+++. +.+++|||+|.+.++|.+|+..|++..|+|+.|+|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3467899999999999999999999999988 555554 3479999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 015091 353 GRSPSNKQ 360 (413)
Q Consensus 353 ~~~~~~~~ 360 (413)
++.+..+.
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpx_A 102 GKNKKQRS 109 (115)
T ss_dssp CCCCSCCC
T ss_pred ccCCCCCC
Confidence 98765433
No 216
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.6e-16 Score=121.41 Aligned_cols=77 Identities=21% Similarity=0.405 Sum_probs=71.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEecc
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 354 (413)
..++|||+||+.++++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|+.. ++..|+|+.|+|++++
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 4589999999999999999999999999999999765 67999999999999999997 9999999999999998
Q ss_pred CCCC
Q 015091 355 SPSN 358 (413)
Q Consensus 355 ~~~~ 358 (413)
++..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7543
No 217
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.4e-16 Score=118.40 Aligned_cols=88 Identities=22% Similarity=0.342 Sum_probs=81.7
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceE
Q 015091 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (413)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 247 (413)
......++|||+||+.++++++|+++| +.||.|..+.++.+..++.++|||||+|.+.++|++|++. ++..|.|+.|.
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYF-SQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHH-HTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 446677899999999999999999999 8999999999999988999999999999999999999988 99999999999
Q ss_pred eccCCCCCcc
Q 015091 248 IGPATNKKTV 257 (413)
Q Consensus 248 v~~~~~~~~~ 257 (413)
|.++..+...
T Consensus 89 V~~a~~~~~~ 98 (105)
T 2dh8_A 89 PKPCTPRGMQ 98 (105)
T ss_dssp CCCSCCSSCC
T ss_pred EEEccCCCCC
Confidence 9999876644
No 218
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=2.1e-16 Score=123.45 Aligned_cols=76 Identities=26% Similarity=0.484 Sum_probs=70.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEecc
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 354 (413)
..++|||+||+.++++++|+++|+.||.|.+|.+..+ +++|||+|.+.++|.+|+ .|+|..|+|+.|+|+|++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999999999999654 789999999999999999 799999999999999998
Q ss_pred CCC
Q 015091 355 SPS 357 (413)
Q Consensus 355 ~~~ 357 (413)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 219
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.3e-16 Score=116.92 Aligned_cols=84 Identities=17% Similarity=0.198 Sum_probs=78.7
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
....++|||+|||.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F-~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFF-YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHT-TTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 4556899999999999999999999 899999999999998899999999999999999999999999999999999999
Q ss_pred cCCCC
Q 015091 250 PATNK 254 (413)
Q Consensus 250 ~~~~~ 254 (413)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98654
No 220
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.8e-16 Score=119.89 Aligned_cols=89 Identities=22% Similarity=0.308 Sum_probs=82.2
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcc--------eeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCc
Q 015091 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK--------GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (413)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~--------~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~ 239 (413)
.+....++|||+||+.++++++|+++| +.||.|. .+.++.+..+++++|||||+|.+.++|++|++.|++.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFF-KQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHH-TTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHH-HhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 445678899999999999999999999 8999999 6999999889999999999999999999999999999
Q ss_pred cccCcceEeccCCCCCcc
Q 015091 240 FCSTRPMRIGPATNKKTV 257 (413)
Q Consensus 240 ~~~g~~i~v~~~~~~~~~ 257 (413)
.+.|+.|+|.++..+...
T Consensus 89 ~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp EETTEECEEECSSCCCCS
T ss_pred ccCCCEEEEEECCCCCCC
Confidence 999999999999886543
No 221
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.67 E-value=4.4e-16 Score=120.06 Aligned_cols=79 Identities=23% Similarity=0.352 Sum_probs=70.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeC-CCcE-EEEEecCHHHHHHHHHHhcCceeCC--eeEEEEeccCC
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-GKRC-GFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSP 356 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~-~~~~-afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~ 356 (413)
....|||+||++.+|+++|+++|++||.|.+|.+.+ .+++ |||+|.+.++|.+|++.|||..|.| +.|+|+|++.+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 335677999999999999999999999999998854 4677 9999999999999999999999987 99999999976
Q ss_pred CCC
Q 015091 357 SNK 359 (413)
Q Consensus 357 ~~~ 359 (413)
...
T Consensus 107 ~l~ 109 (130)
T 3zzy_A 107 SLN 109 (130)
T ss_dssp SCC
T ss_pred cee
Confidence 543
No 222
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.67 E-value=8.2e-16 Score=120.04 Aligned_cols=81 Identities=25% Similarity=0.384 Sum_probs=74.5
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEe
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
....+++|||+||+..+++++|+++|+.||.|.+|.+..+ +++|||+|.+.++|.+|+..|++..|+|+.|+|+|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4456789999999999999999999999999999999764 68999999999999999999999999999999999
Q ss_pred ccCCCC
Q 015091 353 GRSPSN 358 (413)
Q Consensus 353 ~~~~~~ 358 (413)
+.....
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 987544
No 223
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9.1e-17 Score=123.55 Aligned_cols=76 Identities=25% Similarity=0.391 Sum_probs=70.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEecc
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA------GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~------~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 354 (413)
..++|||+||+.++++++|+++|+.||.|.+|.|.. .+++|||+|.+.++|.+|+ .||+..|+|+.|+|+|++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 458999999999999999999999999999999964 3689999999999999999 899999999999999998
Q ss_pred CCC
Q 015091 355 SPS 357 (413)
Q Consensus 355 ~~~ 357 (413)
.+.
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 643
No 224
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.66 E-value=3.4e-16 Score=125.33 Aligned_cols=78 Identities=23% Similarity=0.323 Sum_probs=70.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC--CcEEEEEecCHHHHHHHHHHhcCceeCC--eeEEEEeccCC
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG--KRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSP 356 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~--~~~afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~ 356 (413)
...+|||+||++.+++++|+++|++||.|++|.+... +++|||+|.+.++|.+|++.|||..|.| +.|+|+|++.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 3467899999999999999999999999999999643 6799999999999999999999999955 99999999986
Q ss_pred CC
Q 015091 357 SN 358 (413)
Q Consensus 357 ~~ 358 (413)
..
T Consensus 125 ~l 126 (164)
T 1sjr_A 125 SL 126 (164)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 225
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.9e-16 Score=111.74 Aligned_cols=75 Identities=20% Similarity=0.321 Sum_probs=66.8
Q ss_pred CCce-EEEecCCCCCCHHH----HHHHHhcC-CCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEecc
Q 015091 281 NNTT-VFVGNLDSIVTDEH----LRELFSQY-GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354 (413)
Q Consensus 281 ~~~~-l~v~nlp~~~~~~~----l~~~f~~~-G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 354 (413)
++.+ |||+||++.+++++ |+++|++| |.|.+|. .|+|||+|.+.++|.+|++.|+|..+.||.|+|.|++
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~ 82 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP 82 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence 4455 99999999999988 55899999 5999993 2999999999999999999999999999999999999
Q ss_pred CCCCC
Q 015091 355 SPSNK 359 (413)
Q Consensus 355 ~~~~~ 359 (413)
.++.-
T Consensus 83 ~~sd~ 87 (96)
T 2diu_A 83 KNREL 87 (96)
T ss_dssp CSCCC
T ss_pred CCcce
Confidence 87653
No 226
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=3.2e-16 Score=118.39 Aligned_cols=77 Identities=19% Similarity=0.342 Sum_probs=70.7
Q ss_pred CCCceEEEecCCCCC------CHHHHHHHHhcCCCeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCceeCCe-eE
Q 015091 280 PNNTTVFVGNLDSIV------TDEHLRELFSQYGQLVHVKIPA----GKRCGFVQFADRSCAEEALRMLNGTQLGGQ-NI 348 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~------~~~~l~~~f~~~G~i~~v~~~~----~~~~afV~f~~~~~a~~a~~~l~~~~~~g~-~l 348 (413)
..+++|||+|||..+ ++++|+++|+.||.|.+|.+.+ .+|+|||+|.+.++|.+|+..|||..|+|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 346899999999999 7899999999999999999973 478999999999999999999999999998 99
Q ss_pred EEEeccCC
Q 015091 349 RLSWGRSP 356 (413)
Q Consensus 349 ~v~~~~~~ 356 (413)
+|+++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998754
No 227
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.3e-16 Score=117.29 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=68.5
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
.....++|||+|||+++|+++|+++|+.||. ++|+|++++ +++++|||||+|.+.++|++|+ .+|+..|.++.+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 3456789999999999999999999999995 499999998 8999999999999999999999 579998877655444
Q ss_pred e
Q 015091 157 L 157 (413)
Q Consensus 157 ~ 157 (413)
.
T Consensus 88 ~ 88 (102)
T 1wez_A 88 L 88 (102)
T ss_dssp E
T ss_pred E
Confidence 3
No 228
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.1e-16 Score=116.61 Aligned_cols=78 Identities=23% Similarity=0.326 Sum_probs=70.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEE-EEeeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEe
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVH-VKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~-v~~~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
....++|||+|||.++++++|+++|+.||.|.+ |.|..+ +|+|||+|.+.++|.+|+.. ++..|+||.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 346789999999999999999999999999987 777543 78999999999999999997 99999999999999
Q ss_pred ccCCC
Q 015091 353 GRSPS 357 (413)
Q Consensus 353 ~~~~~ 357 (413)
+....
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87543
No 229
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=117.97 Aligned_cols=80 Identities=16% Similarity=0.102 Sum_probs=67.3
Q ss_pred CCCcceeeecCCCC-CCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 78 PGEIRTLWIGDLQY-WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 78 ~~~~~~l~v~~lp~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
..++++|||+|||+ ++|+++|+++|+.||.|.+|+|++++ +||||+|.+.++|.+|++.|++......++.++
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 44689999999999 99999999999999999999998765 899999999999999999998765222445666
Q ss_pred eeeccCC
Q 015091 157 LNWASFG 163 (413)
Q Consensus 157 ~~~~~~~ 163 (413)
+.++...
T Consensus 86 V~~a~~~ 92 (102)
T 1x4d_A 86 VHLSQKY 92 (102)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 6666543
No 230
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.66 E-value=7.3e-17 Score=119.77 Aligned_cols=78 Identities=12% Similarity=0.173 Sum_probs=70.7
Q ss_pred CcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
..++|||+|||.++|+++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|++|++.||+..+.++.+.|..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 468999999999999999999999999999999999988999999999999999999999999999999765544443
No 231
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.3e-16 Score=115.30 Aligned_cols=77 Identities=21% Similarity=0.286 Sum_probs=70.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEE-eeCC--CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCC
Q 015091 280 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVK-IPAG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 356 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~-~~~~--~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 356 (413)
...++|||+|||.++++++|+++|+.||.|.+++ +..+ .+.|||+|.+.++|.+|+..|||..|+|+.|+|+|++++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 3568999999999999999999999999999994 7665 345999999999999999999999999999999999876
No 232
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.66 E-value=2.7e-16 Score=127.29 Aligned_cols=82 Identities=21% Similarity=0.299 Sum_probs=77.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHHhhhCC--CcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 172 PDHTIFVGDLAADVTDYMLQETFRARYP--STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g--~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
..++|||+||++++++++|+++| +.|| .|.++.++.+..+|+++|||||+|.+.++|++|++.|++..|.|+.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F-~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVI-RSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHH-HHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 45799999999999999999999 8999 99999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 015091 250 PATNK 254 (413)
Q Consensus 250 ~~~~~ 254 (413)
++..+
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98654
No 233
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.66 E-value=2.5e-17 Score=155.74 Aligned_cols=86 Identities=21% Similarity=0.392 Sum_probs=80.5
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
....++|||+||+.++|+++|.++| +.||.|..|.|+.+..++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREF-EVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4556899999999999999999999 899999999999998899999999999999999999999999999999999999
Q ss_pred cCCCCCc
Q 015091 250 PATNKKT 256 (413)
Q Consensus 250 ~~~~~~~ 256 (413)
++.....
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9976543
No 234
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.66 E-value=1.2e-16 Score=113.00 Aligned_cols=73 Identities=21% Similarity=0.340 Sum_probs=67.4
Q ss_pred eeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 83 ~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
+|||+|||.++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++|++ +|+..+.++.+.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 73 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECK 73 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEE
Confidence 58999999999999999999999999999999998899999999999999999999997 89999977655443
No 235
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.66 E-value=1.4e-16 Score=112.42 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=62.4
Q ss_pred CcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcc
Q 015091 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (413)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~ 154 (413)
.+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.++.+.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~ 74 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIF 74 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 467899999999999999999999999999999976 459999999999999999999999999664433
No 236
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9.6e-16 Score=116.76 Aligned_cols=82 Identities=15% Similarity=0.246 Sum_probs=70.7
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
.....++|||+|||.++|+++|+++|+.||.|.+|++..+ +++++||||+|.+.++|++|++.||+..|.++ .++
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~ 92 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY--RLR 92 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTE--ECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe--EEE
Confidence 4567899999999999999999999999999999999654 56889999999999999999999999999664 555
Q ss_pred eeeccCC
Q 015091 157 LNWASFG 163 (413)
Q Consensus 157 ~~~~~~~ 163 (413)
+.++...
T Consensus 93 V~~a~~~ 99 (109)
T 1x4a_A 93 VEFPRSG 99 (109)
T ss_dssp EECCCCC
T ss_pred EEEcccC
Confidence 5555443
No 237
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=114.13 Aligned_cols=72 Identities=15% Similarity=0.239 Sum_probs=65.3
Q ss_pred cceeeecCCCCCC------CHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCC-Cc
Q 015091 81 IRTLWIGDLQYWM------DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG-EQ 153 (413)
Q Consensus 81 ~~~l~v~~lp~~~------~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~-~~ 153 (413)
+++|||+|||..+ ++++|+++|++||.|.+|++. +.+|+++|||||+|.+.++|.+|++.|||..+.++ .+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 679999999999999999987 35799999999999999999999999999999776 44
Q ss_pred c
Q 015091 154 N 154 (413)
Q Consensus 154 ~ 154 (413)
.
T Consensus 79 ~ 79 (81)
T 2krb_A 79 R 79 (81)
T ss_dssp C
T ss_pred E
Confidence 3
No 238
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=123.70 Aligned_cols=87 Identities=16% Similarity=0.308 Sum_probs=80.2
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcce--eEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCc----cc
Q 015091 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG--AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV----FC 241 (413)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~--~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~----~~ 241 (413)
......++|||+||++++++++|+++| +.||.|.. |++++++.+++++|||||+|.+. +|.+|++.|++. .+
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F-~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGAL-APYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHH-GGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHH-HHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 345667899999999999999999999 89999976 99999999999999999999999 999999999999 99
Q ss_pred cCcceEeccCCCCCc
Q 015091 242 STRPMRIGPATNKKT 256 (413)
Q Consensus 242 ~g~~i~v~~~~~~~~ 256 (413)
.|+.|+|.++.....
T Consensus 96 ~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 96 DGKTINVEFAKGSKR 110 (131)
T ss_dssp GGCCCCCEECCCSCC
T ss_pred CCEEEEEEECCCCCC
Confidence 999999999977644
No 239
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-16 Score=113.87 Aligned_cols=75 Identities=25% Similarity=0.493 Sum_probs=68.5
Q ss_pred ceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
++|||+|||.++++++|+++|++||.|.+|++.+++.+|+++|||||+|.+.++|.+|++.++ ..+.++.+.++.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEe
Confidence 579999999999999999999999999999999999899999999999999999999999988 788766555443
No 240
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.66 E-value=3.7e-16 Score=113.84 Aligned_cols=81 Identities=22% Similarity=0.430 Sum_probs=75.2
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEe
Q 015091 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 248 (413)
.....++|||+|||.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|.+|+ ++++..+.|+.|+|
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v 84 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYF-TKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDP 84 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEE
Confidence 45677899999999999999999999 89999999999999989999999999999999999999 55888899999999
Q ss_pred ccC
Q 015091 249 GPA 251 (413)
Q Consensus 249 ~~~ 251 (413)
+++
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 865
No 241
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.4e-16 Score=115.32 Aligned_cols=80 Identities=15% Similarity=0.220 Sum_probs=67.1
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhC--CCcCCCCCcc
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN--GTPMPNGEQN 154 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~--g~~~~~~~~~ 154 (413)
...++++|||+|||+++|+++|+++|+.||.|.+|.++++ +|||||+|.+.++|.+|++.|+ +..+. ++.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~--Gr~ 82 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLR--NQP 82 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEET--TEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceEC--CcE
Confidence 3456789999999999999999999999999999999876 4999999999999999999875 45564 456
Q ss_pred eeeeeccCCC
Q 015091 155 FRLNWASFGA 164 (413)
Q Consensus 155 ~~~~~~~~~~ 164 (413)
+++.++....
T Consensus 83 l~V~~a~~~~ 92 (101)
T 2cq1_A 83 IYIQYSNHKE 92 (101)
T ss_dssp CEEEECSCSS
T ss_pred EEEEEcCccc
Confidence 6666665443
No 242
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.2e-16 Score=116.75 Aligned_cols=77 Identities=18% Similarity=0.250 Sum_probs=68.2
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEe
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
.....++|||+|||.++++++|+++|+.||.| +|.|..+ +++|||+|.+.++|.+||. +|+..|+||.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 34566899999999999999999999999955 8888644 6799999999999999995 799999999999999
Q ss_pred ccCC
Q 015091 353 GRSP 356 (413)
Q Consensus 353 ~~~~ 356 (413)
+...
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8754
No 243
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.2e-16 Score=118.31 Aligned_cols=81 Identities=14% Similarity=0.100 Sum_probs=75.4
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
....++|||+|||.++|+++|+++| +.||.|.++.++.+.. +.++|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F-~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWL-EDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHH-HTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHH-hhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 4556899999999999999999999 8999999999999986 9999999999999999999997 89999999999998
Q ss_pred cCCC
Q 015091 250 PATN 253 (413)
Q Consensus 250 ~~~~ 253 (413)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 7655
No 244
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=119.65 Aligned_cols=76 Identities=32% Similarity=0.515 Sum_probs=68.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEE
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 351 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 351 (413)
....++|||+||+.++++++|+++|+.|| |.+|.+.++ +|+|||+|.+.++|.+|+ .|+|..|+|+.|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45679999999999999999999999999 999999754 579999999999999999 899999999999999
Q ss_pred eccCC
Q 015091 352 WGRSP 356 (413)
Q Consensus 352 ~~~~~ 356 (413)
+++++
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 99864
No 245
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.6e-16 Score=118.01 Aligned_cols=86 Identities=24% Similarity=0.415 Sum_probs=79.4
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCC-CCCceeEEEEeCCHHHHHHHHHhhCCccccCcceE
Q 015091 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT-GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~-g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 247 (413)
.....++|||+||+.++++++|+++| +.|| |..+.++.+..+ ++++|||||+|.+.++|++|+ .|++..+.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFF-RGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHT-TTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHH-HHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 34567899999999999999999999 8999 999999999887 899999999999999999999 9999999999999
Q ss_pred eccCCCCCcc
Q 015091 248 IGPATNKKTV 257 (413)
Q Consensus 248 v~~~~~~~~~ 257 (413)
|.++..+...
T Consensus 88 V~~a~~~~~~ 97 (104)
T 1wi8_A 88 VDVADQAQDK 97 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999886543
No 246
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=120.92 Aligned_cols=81 Identities=22% Similarity=0.480 Sum_probs=71.0
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
.....++|||+||+.++|+++|+++|+.||.|.+|++++++ +.++|||||+|.+.++|++|++.|||..+.++. ++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~--l~ 100 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRK--IE 100 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE--CE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEE--EE
Confidence 45578999999999999999999999999999999999885 458899999999999999999999999997654 44
Q ss_pred eeecc
Q 015091 157 LNWAS 161 (413)
Q Consensus 157 ~~~~~ 161 (413)
+.++.
T Consensus 101 V~~a~ 105 (109)
T 2err_A 101 VNNAT 105 (109)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 44443
No 247
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.2e-16 Score=119.44 Aligned_cols=79 Identities=15% Similarity=0.207 Sum_probs=67.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCC--CcCCCCCcce
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNG--TPMPNGEQNF 155 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g--~~~~~~~~~~ 155 (413)
..++++|||+|||+++|+++|+++|+.||.|.+|++++++ |||||+|.+.++|.+|++.+++ ..+.+ +.+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k------G~AFVeF~~~e~A~~Ai~~l~~~~~~l~G--r~l 99 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK------NQAFIEMNTEEAANTMVNYYTSVTPVLRG--QPI 99 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG------TEEEEECSCHHHHHHHHHHHHHHCCCBTT--BCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC------CEEEEEECCHHHHHHHHHHhccCCceECC--eEE
Confidence 4567899999999999999999999999999999999764 9999999999999999998875 45654 556
Q ss_pred eeeeccCCC
Q 015091 156 RLNWASFGA 164 (413)
Q Consensus 156 ~~~~~~~~~ 164 (413)
++.++....
T Consensus 100 ~V~~a~~k~ 108 (119)
T 2ad9_A 100 YIQFSNHKE 108 (119)
T ss_dssp EEEECSSSS
T ss_pred EEEEccCCC
Confidence 666665443
No 248
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-15 Score=114.94 Aligned_cols=90 Identities=27% Similarity=0.345 Sum_probs=81.5
Q ss_pred CCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCc
Q 015091 165 GEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244 (413)
Q Consensus 165 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 244 (413)
..+......++|||+||+.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|++|++ ++..+.|+
T Consensus 7 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~ 83 (103)
T 2cqg_A 7 GVKRAVQKTSDLIVLGLPWKTTEQDLKEYF-STFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGR 83 (103)
T ss_dssp SCSCCCCCCCCEEEESCCSSCCHHHHHHHH-GGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTE
T ss_pred CCCCccCCCCEEEEEcCCCcCCHHHHHHHH-HhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCe
Confidence 344556778899999999999999999999 899999999999999899999999999999999999997 47889999
Q ss_pred ceEeccCCCCCcc
Q 015091 245 PMRIGPATNKKTV 257 (413)
Q Consensus 245 ~i~v~~~~~~~~~ 257 (413)
.|.|.++..+...
T Consensus 84 ~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 84 WCDCKLPNSKQSQ 96 (103)
T ss_dssp EEEEECCCTTCCC
T ss_pred EEEEEecCCCCcC
Confidence 9999999887554
No 249
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-16 Score=115.59 Aligned_cols=81 Identities=22% Similarity=0.377 Sum_probs=76.5
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEecc
Q 015091 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (413)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 250 (413)
.+.++|||+|||.++++++|+++| +.||.|..+.++.+..++.++|||||+|.+.++|.+|++.|++..+.|+.+++.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLC-QPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTS-TTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 457899999999999999999999 8999999999999988999999999999999999999999999999999999887
Q ss_pred CC
Q 015091 251 AT 252 (413)
Q Consensus 251 ~~ 252 (413)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 250
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.8e-15 Score=116.34 Aligned_cols=87 Identities=25% Similarity=0.383 Sum_probs=79.7
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceE
Q 015091 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (413)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 247 (413)
......++|||+||+.++++++|+++| +.||.|..+.++.+. +++++|||||+|.+.++|++|++.|++..+.|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f-~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVF-SMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHH-TTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 345667899999999999999999999 899999999999987 689999999999999999999999999999999999
Q ss_pred eccCCCCCc
Q 015091 248 IGPATNKKT 256 (413)
Q Consensus 248 v~~~~~~~~ 256 (413)
|.++.....
T Consensus 88 v~~a~~~~~ 96 (114)
T 2do0_A 88 VKMDERALP 96 (114)
T ss_dssp EEECSCCCC
T ss_pred EEEcccCCC
Confidence 999876543
No 251
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.65 E-value=4.1e-17 Score=128.71 Aligned_cols=77 Identities=21% Similarity=0.244 Sum_probs=67.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEec
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 353 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 353 (413)
....++|||+|||+++++++|+++|+.|| |++|.|..+ +|+|||+|++.++|.+|| .+|+..|+||.|+|.++
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 34568999999999999999999999999 668888654 789999999999999999 68999999999999998
Q ss_pred cCCC
Q 015091 354 RSPS 357 (413)
Q Consensus 354 ~~~~ 357 (413)
..+.
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7643
No 252
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.65 E-value=2.6e-16 Score=116.79 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=75.9
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
....++|||+|||.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFF-YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHT-TTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 3456899999999999999999999 899999999999998899999999999999999999999999999999999999
Q ss_pred cCCC
Q 015091 250 PATN 253 (413)
Q Consensus 250 ~~~~ 253 (413)
++..
T Consensus 91 ~a~s 94 (95)
T 2ek1_A 91 GPSS 94 (95)
T ss_dssp CCC-
T ss_pred eccC
Confidence 8753
No 253
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.7e-16 Score=117.46 Aligned_cols=85 Identities=32% Similarity=0.568 Sum_probs=79.8
Q ss_pred CCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccC
Q 015091 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (413)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 251 (413)
..++|||+||+.++++++|+++| +.||.|..+.++.+..++.++|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIF-SEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHH-HTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHH-HhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45799999999999999999999 89999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCcc
Q 015091 252 TNKKTV 257 (413)
Q Consensus 252 ~~~~~~ 257 (413)
......
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 876543
No 254
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.65 E-value=7.4e-16 Score=123.20 Aligned_cols=78 Identities=26% Similarity=0.482 Sum_probs=71.4
Q ss_pred CCCCCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 015091 276 SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 349 (413)
Q Consensus 276 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 349 (413)
.......++|||+|||..+++++|+++|+.||.|.++.+.++ +++|||+|.+.++|.+|++.||+..|+|+.|+
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344557899999999999999999999999999999999654 78999999999999999999999999999999
Q ss_pred EEec
Q 015091 350 LSWG 353 (413)
Q Consensus 350 v~~~ 353 (413)
|+||
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9985
No 255
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=3e-16 Score=116.66 Aligned_cols=80 Identities=20% Similarity=0.343 Sum_probs=70.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEe-eCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCC
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI-PAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 357 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~-~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 357 (413)
....++|||+||+..+++++|+++|+.||.|..+.. ...+|+|||+|.+.++|.+|+..|++..|+|+.|+|+|++++.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 345689999999999999999999999999877711 2237899999999999999999999999999999999998754
Q ss_pred C
Q 015091 358 N 358 (413)
Q Consensus 358 ~ 358 (413)
.
T Consensus 93 ~ 93 (96)
T 1fjc_A 93 G 93 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 256
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=9.7e-16 Score=115.41 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=65.8
Q ss_pred CCCcceeeecCCCCC-CCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 78 PGEIRTLWIGDLQYW-MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~-~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
..++++|||+|||++ +|+++|+++|+.||.|.+|+++++ +|||||+|.+.++|.+|++.|++....-.++.++
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 556899999999998 999999999999999999999754 4999999999999999999887544222345566
Q ss_pred eeeccCC
Q 015091 157 LNWASFG 163 (413)
Q Consensus 157 ~~~~~~~ 163 (413)
+.++...
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 6666543
No 257
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.2e-16 Score=122.30 Aligned_cols=79 Identities=18% Similarity=0.159 Sum_probs=70.2
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
...+.++|||+|||+++|+++|+++|+.||.|.++.++.+..+|+++|||||+|.+.++|.+|++ +|+..|.++.+.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34567899999999999999999999999999997777777799999999999999999999999 99999977654443
No 258
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.65 E-value=5.1e-16 Score=120.05 Aligned_cols=78 Identities=24% Similarity=0.466 Sum_probs=72.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCCC
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 358 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 358 (413)
...+++|||+|| ++++++|+++|+.||.|.+|.+.+.+++|||+|.+.++|.+|+..|++..|+|+.|+|.|++.+..
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 346789999996 699999999999999999999999999999999999999999999999999999999999987543
No 259
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.6e-16 Score=120.00 Aligned_cols=79 Identities=14% Similarity=0.157 Sum_probs=70.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHhcCCCe-EEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEE
Q 015091 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL-VHVKIPA-----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 351 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i-~~v~~~~-----~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 351 (413)
.....++|||+|||.++++++|+++|+.||.| .+|.|.. .+++|||+|.+.++|.+||.. |+..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 34567899999999999999999999999999 7788854 478999999999999999997 9999999999999
Q ss_pred eccCCC
Q 015091 352 WGRSPS 357 (413)
Q Consensus 352 ~~~~~~ 357 (413)
++..+.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987653
No 260
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.65 E-value=6e-16 Score=113.29 Aligned_cols=80 Identities=19% Similarity=0.460 Sum_probs=76.2
Q ss_pred CceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCC
Q 015091 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (413)
Q Consensus 173 ~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 252 (413)
.++|||+|||.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|++|+ .+++..+.|+.|+|.++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHF-HGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHH-GGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999 89999999999999889999999999999999999999 999999999999999986
Q ss_pred CC
Q 015091 253 NK 254 (413)
Q Consensus 253 ~~ 254 (413)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 261
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.65 E-value=1.2e-16 Score=117.36 Aligned_cols=75 Identities=21% Similarity=0.462 Sum_probs=69.9
Q ss_pred ceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
++|||+|||.++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.+ |.+|+..||+..+.++.+.++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEE
Confidence 68999999999999999999999999999999999989999999999999999 9999999999999776655554
No 262
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=5.2e-16 Score=113.11 Aligned_cols=71 Identities=23% Similarity=0.491 Sum_probs=68.0
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcC----C-------CeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQY----G-------QLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 349 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~----G-------~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 349 (413)
..++|||+|||.++++++|+++|+.| | .|.++.+.+++++|||+|.+.++|.+|+ .||+..|+|+.|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 83 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 83 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEE
Confidence 46899999999999999999999999 8 9999999999999999999999999999 9999999999999
Q ss_pred EEe
Q 015091 350 LSW 352 (413)
Q Consensus 350 v~~ 352 (413)
|+.
T Consensus 84 V~r 86 (87)
T 2hzc_A 84 IRR 86 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 974
No 263
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.64 E-value=2.8e-16 Score=111.01 Aligned_cols=75 Identities=24% Similarity=0.390 Sum_probs=71.4
Q ss_pred eEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccC
Q 015091 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (413)
Q Consensus 175 ~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 251 (413)
+|||+|||.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|++|++ +++..+.|+.|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYF-EQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHH-HTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHH-HhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999 899999999999998899999999999999999999995 9999999999999875
No 264
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=111.89 Aligned_cols=82 Identities=23% Similarity=0.306 Sum_probs=76.4
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
....++|||+|||.++++++|+++| +.| .|..+.++.+ .+++++|||||+|.+.++|.+|++ +++..+.|+.|+|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F-~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFL-APL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHH-TTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHH-hhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 4567899999999999999999999 889 9999999999 689999999999999999999998 99999999999999
Q ss_pred cCCCCC
Q 015091 250 PATNKK 255 (413)
Q Consensus 250 ~~~~~~ 255 (413)
++..+.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 987753
No 265
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.64 E-value=3.7e-16 Score=114.19 Aligned_cols=83 Identities=22% Similarity=0.389 Sum_probs=76.6
Q ss_pred CCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCC-CceeEEEEeCCHHHHHHHHHhhCCccccCcceEecc
Q 015091 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGR-TKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (413)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~-~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 250 (413)
..++|||+||+.++++++|+++| +.||.|..+.++.+..++. ++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIF-STYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHH-HTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 45799999999999999999999 8999999999998877665 899999999999999999999999999999999999
Q ss_pred CCCCC
Q 015091 251 ATNKK 255 (413)
Q Consensus 251 ~~~~~ 255 (413)
+....
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 86643
No 266
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1e-15 Score=115.38 Aligned_cols=80 Identities=15% Similarity=0.175 Sum_probs=70.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEE-EEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVA-VKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~-~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
....++|||+|||+++|+++|+++|+.||.|.+ |+|+.+ .+|+++|||||+|.+.++|.+|++. ++..+.++. |+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~--i~ 87 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRY--IE 87 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSC--CE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcE--EE
Confidence 456789999999999999999999999999987 888888 6899999999999999999999987 998887664 44
Q ss_pred eeecc
Q 015091 157 LNWAS 161 (413)
Q Consensus 157 ~~~~~ 161 (413)
+.++.
T Consensus 88 v~~~~ 92 (104)
T 1wg5_A 88 IFKSS 92 (104)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 44443
No 267
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.64 E-value=4.1e-16 Score=121.84 Aligned_cols=80 Identities=19% Similarity=0.429 Sum_probs=72.2
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeee
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 158 (413)
.+.++|||+|||.++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|+ .||+..+.++. +++.
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~--l~V~ 110 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRT--IKVL 110 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEE--CEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeE--EEEE
Confidence 35789999999999999999999999999999999999889999999999999999999999 89999997654 4555
Q ss_pred ecc
Q 015091 159 WAS 161 (413)
Q Consensus 159 ~~~ 161 (413)
++.
T Consensus 111 ~a~ 113 (124)
T 2jwn_A 111 PKR 113 (124)
T ss_dssp ESS
T ss_pred ECC
Confidence 544
No 268
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.64 E-value=3.6e-16 Score=135.10 Aligned_cols=79 Identities=19% Similarity=0.463 Sum_probs=71.2
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccC--ceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTG--EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G--~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
...++|||+||++++|+++|+++|+.|| .|++|+|++++.+++++|||||+|.+.++|.+||+.||+..|.++.+.|+
T Consensus 66 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 66 GKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp ---CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 3678999999999999999999999999 99999999999999999999999999999999999999999977655554
Q ss_pred e
Q 015091 157 L 157 (413)
Q Consensus 157 ~ 157 (413)
+
T Consensus 146 ~ 146 (229)
T 3q2s_C 146 P 146 (229)
T ss_dssp E
T ss_pred E
Confidence 4
No 269
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.64 E-value=6.8e-16 Score=123.45 Aligned_cols=79 Identities=19% Similarity=0.373 Sum_probs=72.2
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcce
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~ 155 (413)
.....++|||+|||.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.||+..+.++.+.|
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456899999999999999999999999999999999999889999999999999999999999999999997654433
No 270
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.64 E-value=3.3e-16 Score=120.83 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=70.1
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCc---eEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCc
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGE---VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~---v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~ 153 (413)
...+.++|||+|||+++|+++|+++|+.||. |.+|+|++++. |+++|||||+|.+.++|++|++ +|+..|.++
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr-- 88 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHR-- 88 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE--
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCe--
Confidence 3456789999999999999999999999999 89999999986 9999999999999999999998 899988664
Q ss_pred ceeeee
Q 015091 154 NFRLNW 159 (413)
Q Consensus 154 ~~~~~~ 159 (413)
.|++.+
T Consensus 89 ~i~V~~ 94 (118)
T 2db1_A 89 YIEVFK 94 (118)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 444443
No 271
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.64 E-value=2.3e-16 Score=123.99 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=70.4
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCc---eEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCc
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGE---VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~---v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~ 153 (413)
...+.++|||+|||+++|+++|+++|+.||. |.+|+|++++. |+++|||||+|.+.++|++|++ +|+..+.++
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr-- 115 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHR-- 115 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSS--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCE--
Confidence 3456789999999999999999999999999 89999999986 9999999999999999999998 999999665
Q ss_pred ceeeee
Q 015091 154 NFRLNW 159 (413)
Q Consensus 154 ~~~~~~ 159 (413)
.|++.+
T Consensus 116 ~i~V~~ 121 (136)
T 2hgl_A 116 YIEVFK 121 (136)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 444443
No 272
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=2.1e-15 Score=120.81 Aligned_cols=84 Identities=12% Similarity=0.247 Sum_probs=73.9
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
+....+|||+||++.+|+++|+++|++||.|.+|++..++ ++|||||+|.+.++|++|++.|||..|.+..+.+++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 4456779999999999999999999999999999997542 468999999999999999999999999876788888
Q ss_pred eeccCCCC
Q 015091 158 NWASFGAG 165 (413)
Q Consensus 158 ~~~~~~~~ 165 (413)
.|+.....
T Consensus 119 ~~Ak~~~l 126 (164)
T 1sjr_A 119 DFSKLTSL 126 (164)
T ss_dssp EECSSSSC
T ss_pred EEecCCcc
Confidence 88876643
No 273
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.64 E-value=5.6e-16 Score=117.78 Aligned_cols=86 Identities=23% Similarity=0.375 Sum_probs=75.9
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEe
Q 015091 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 248 (413)
.....++|||+||+.++++++|+++| +.||.|..+.++.+..++.++|||||+|.+.++|.+|++.+ +..+.|+.|+|
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F-~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYF-GQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHH-TTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHH-HccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 34567899999999999999999999 89999999999999889999999999999999999999876 59999999999
Q ss_pred ccCCCCCc
Q 015091 249 GPATNKKT 256 (413)
Q Consensus 249 ~~~~~~~~ 256 (413)
.++..+..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99887643
No 274
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=6.6e-16 Score=117.90 Aligned_cols=86 Identities=17% Similarity=0.246 Sum_probs=78.1
Q ss_pred CCCCCceEEecCCCCCCCHHHHH---HHHhhhCCCcceeEEEEcCCCC---CCceeEEEEeCCHHHHHHHHHhhCCcccc
Q 015091 169 DDTPDHTIFVGDLAADVTDYMLQ---ETFRARYPSTKGAKVVIDRLTG---RTKGYGFVRFGDESEQLRAMTEMNGVFCS 242 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~---~~f~~~~g~v~~~~~~~~~~~g---~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 242 (413)
.....++|||+|||+++++++|+ ++| +.||.|..+.++.+..++ +++|||||+|.+.++|++|++.||+..++
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F-~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYF-GKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTT-TTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHh-hccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 34567899999999999999999 999 899999999999887654 56699999999999999999999999999
Q ss_pred CcceEeccCCCCC
Q 015091 243 TRPMRIGPATNKK 255 (413)
Q Consensus 243 g~~i~v~~~~~~~ 255 (413)
|+.|+|.++..+.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999998765
No 275
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.63 E-value=1.3e-15 Score=124.03 Aligned_cols=85 Identities=22% Similarity=0.303 Sum_probs=80.4
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
....++|||+||+.++++++|+++| +.||.|..|.++.+..++.+++||||+|.+.++|++|++.|++..|.|+.|+|.
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELF-SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4567899999999999999999999 899999999999999899999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 015091 250 PATNKK 255 (413)
Q Consensus 250 ~~~~~~ 255 (413)
++....
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 998754
No 276
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=1.5e-15 Score=110.66 Aligned_cols=76 Identities=34% Similarity=0.584 Sum_probs=62.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-CcEEEEEecCHHHHHHHHHHhcCce--eCCeeEEEEeccC
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-KRCGFVQFADRSCAEEALRMLNGTQ--LGGQNIRLSWGRS 355 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-~~~afV~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~~~~ 355 (413)
....++|||+|||.++++++|+++|++||.|.++.+.++ ||||||+|++.++|.+ |++.. ++|+.|.|.++++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 456789999999999999999999999999999999865 8999999999999883 45555 5699999999987
Q ss_pred CCC
Q 015091 356 PSN 358 (413)
Q Consensus 356 ~~~ 358 (413)
+..
T Consensus 84 k~~ 86 (89)
T 3d2w_A 84 KHN 86 (89)
T ss_dssp ---
T ss_pred CCc
Confidence 543
No 277
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.63 E-value=3.9e-16 Score=118.31 Aligned_cols=78 Identities=13% Similarity=0.143 Sum_probs=70.1
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCc---eEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCc
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGE---VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~---v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~ 153 (413)
...+.++|||+|||+++|+++|+++|+.||. |.+|+|++++. |+++|||||+|.+.++|.+|++ +|+..+.++.+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 4567899999999999999999999999998 89999999986 9999999999999999999998 89988866554
Q ss_pred cee
Q 015091 154 NFR 156 (413)
Q Consensus 154 ~~~ 156 (413)
.|.
T Consensus 85 ~V~ 87 (107)
T 2lmi_A 85 EVY 87 (107)
T ss_dssp CCE
T ss_pred EEE
Confidence 443
No 278
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2e-15 Score=114.69 Aligned_cols=80 Identities=16% Similarity=0.229 Sum_probs=70.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCC---cc
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE---QN 154 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~---~~ 154 (413)
....++|||+|||+++|+++|+++|+.||.|.+|+|+.+ |||||+|.+.++|++|++.||+..|.+.. ..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 356789999999999999999999999999999999876 89999999999999999999999997633 66
Q ss_pred eeeeeccCCC
Q 015091 155 FRLNWASFGA 164 (413)
Q Consensus 155 ~~~~~~~~~~ 164 (413)
|++.++....
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 7777766543
No 279
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=113.52 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=74.5
Q ss_pred CCCceEEecCCCCCCCHHHHH----HHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcce
Q 015091 171 TPDHTIFVGDLAADVTDYMLQ----ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (413)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~----~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 246 (413)
...++|||+||+.++++++|+ ++| +.||.|.++.++.+..+ ++||||+|.+.++|++|++.||+..+.|+.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F-~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAF-ARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHH-HHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhc-cccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 456799999999999999999 999 89999999999888755 8899999999999999999999999999999
Q ss_pred EeccCCCCC
Q 015091 247 RIGPATNKK 255 (413)
Q Consensus 247 ~v~~~~~~~ 255 (413)
+|.++....
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999997654
No 280
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4.7e-16 Score=117.44 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=66.4
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCc
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~ 153 (413)
..+.++|||+|||+++|+++|+++|+.| .|.+|+|+.++. |+++|||||+|.+.++|.+|+ .+|+..|.++.+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i 85 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYV 85 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEE
Confidence 4567899999999999999999999999 899999999975 999999999999999999999 689998866533
No 281
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4.1e-16 Score=110.78 Aligned_cols=76 Identities=26% Similarity=0.420 Sum_probs=72.5
Q ss_pred ceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccC
Q 015091 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (413)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 251 (413)
++|||+|||.++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|++|++.++ ..+.|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYF-GQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHH-TTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999 899999999999998899999999999999999999999999 9999999999876
No 282
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.6e-16 Score=112.70 Aligned_cols=76 Identities=33% Similarity=0.526 Sum_probs=65.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCCC
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 358 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 358 (413)
.+++|||+|||.++++++|+++|+.||.|.++.+.++ +++|||+|.+.++|++|+.. ...++|+.|+|.+++++..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 4689999999999999999999999999999999765 89999999999999764332 3446999999999887543
No 283
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2e-15 Score=112.37 Aligned_cols=80 Identities=19% Similarity=0.434 Sum_probs=69.1
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
..+.++|||+|||.++|+++|+++|+.||.|.+|++..+ +|||||+|.+.++|++|++.||+..+.+....+++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345789999999999999999999999999999998765 48999999999999999999999999743556666
Q ss_pred eeccCC
Q 015091 158 NWASFG 163 (413)
Q Consensus 158 ~~~~~~ 163 (413)
.++...
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 666543
No 284
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.63 E-value=2.7e-16 Score=111.08 Aligned_cols=74 Identities=16% Similarity=0.337 Sum_probs=67.9
Q ss_pred eeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 83 ~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
+|||+|||.++++++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|.+|++. ++..+.++.+.++.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 689999999999999999999999999999999998999999999999999999999975 88888777666553
No 285
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.62 E-value=2.4e-16 Score=115.63 Aligned_cols=81 Identities=30% Similarity=0.512 Sum_probs=73.6
Q ss_pred ceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCC
Q 015091 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (413)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 253 (413)
++|||+||+.++++++|+++| +.||.|.++.++.+..+++++|||||+|.+.+ |.+|++.|++..+.|+.|+|.++..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELF-SQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTH-HHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHH-HhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 489999999999999999999 89999999999999989999999999999999 9999999999999999999999877
Q ss_pred CCc
Q 015091 254 KKT 256 (413)
Q Consensus 254 ~~~ 256 (413)
...
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 286
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=1.8e-15 Score=113.51 Aligned_cols=79 Identities=23% Similarity=0.364 Sum_probs=69.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEE-----EEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEec
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVH-----VKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 353 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~-----v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 353 (413)
....++|||+||+.++++++|+++|+.||.|.. ....+.+++|||+|.+.++|.+|++ |++..|+|+.|+|+++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 345789999999999999999999999996654 3334568999999999999999999 9999999999999999
Q ss_pred cCCCC
Q 015091 354 RSPSN 358 (413)
Q Consensus 354 ~~~~~ 358 (413)
+.+..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87543
No 287
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=116.57 Aligned_cols=87 Identities=13% Similarity=0.167 Sum_probs=79.0
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCC-cceeEEE-EcCCCCCCceeEEEEeCCHHHHHHHHHhhC--CccccCcc
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPS-TKGAKVV-IDRLTGRTKGYGFVRFGDESEQLRAMTEMN--GVFCSTRP 245 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~-v~~~~~~-~~~~~g~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~ 245 (413)
....++|||+||+.++++++|+++| +.||. |..+.++ .+..++.++|||||+|.+.++|.+|++.|+ +..+.|+.
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f-~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEI-AKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHH-HHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHH-HHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 4567899999999999999999999 89998 9999988 787788999999999999999999999996 58999999
Q ss_pred eEeccCCCCCcc
Q 015091 246 MRIGPATNKKTV 257 (413)
Q Consensus 246 i~v~~~~~~~~~ 257 (413)
|+|.++..+...
T Consensus 84 l~V~~a~~~~~~ 95 (109)
T 2dis_A 84 IAVDWAEPEIDV 95 (109)
T ss_dssp CEEEESCSSCST
T ss_pred EEEEEcCCCCCc
Confidence 999999876554
No 288
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.62 E-value=1.1e-15 Score=120.10 Aligned_cols=83 Identities=16% Similarity=0.209 Sum_probs=76.5
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHhhhCCC---cceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcc
Q 015091 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPS---TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~---v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 245 (413)
.....++|||+|||+++|+++|+++| +.||. |..+.++.+.. |+++|||||+|.+.++|++|++ +++..+.|+.
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F-~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFL-SDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHT-TTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34567899999999999999999999 89999 89999999986 9999999999999999999997 9999999999
Q ss_pred eEeccCCCC
Q 015091 246 MRIGPATNK 254 (413)
Q Consensus 246 i~v~~~~~~ 254 (413)
|+|.++..+
T Consensus 117 i~V~~a~~~ 125 (136)
T 2hgl_A 117 IEVFKSHRT 125 (136)
T ss_dssp EEEEECCHH
T ss_pred EEEEECChH
Confidence 999988654
No 289
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.1e-16 Score=117.73 Aligned_cols=84 Identities=13% Similarity=0.210 Sum_probs=77.5
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHhhhCCCc-ceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceE
Q 015091 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPST-KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v-~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 247 (413)
.....++|||+|||+++++++|+++| +.||.| ..+.++.+. +++++|||||+|.+.++|++|++. ++..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFL-EGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHT-TTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHH-HhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 45567899999999999999999999 899999 899999998 999999999999999999999965 99999999999
Q ss_pred eccCCCCC
Q 015091 248 IGPATNKK 255 (413)
Q Consensus 248 v~~~~~~~ 255 (413)
|.++..+.
T Consensus 88 v~~a~~~~ 95 (114)
T 2cpy_A 88 VHVVTLED 95 (114)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99987654
No 290
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=3.1e-17 Score=126.55 Aligned_cols=78 Identities=27% Similarity=0.461 Sum_probs=71.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHhcCCCeEE--------EEeeCC------CcEEEEEecCHHHHHHHHHHhcCceeCC
Q 015091 280 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVH--------VKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGG 345 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------v~~~~~------~~~afV~f~~~~~a~~a~~~l~~~~~~g 345 (413)
...++|||+||+.++++++|+++|+.||.|.+ |.+..+ +++|||+|.+.++|.+|+..||+..|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45689999999999999999999999999988 777654 6899999999999999999999999999
Q ss_pred eeEEEEeccCCC
Q 015091 346 QNIRLSWGRSPS 357 (413)
Q Consensus 346 ~~l~v~~~~~~~ 357 (413)
+.|+|+|++.+.
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999998653
No 291
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=2.2e-15 Score=116.99 Aligned_cols=81 Identities=14% Similarity=0.293 Sum_probs=68.8
Q ss_pred CCCcceeeecCCCCCCCHHHHH----HHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCc
Q 015091 78 PGEIRTLWIGDLQYWMDETYLN----TCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~----~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~ 153 (413)
..+.++|||+||++.+++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|.+|++.|||..+.++
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr-- 100 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN-- 100 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC--
Confidence 3457899999999999999876 6999999999988753 578999999999999999999999999999775
Q ss_pred ceeeeeccCC
Q 015091 154 NFRLNWASFG 163 (413)
Q Consensus 154 ~~~~~~~~~~ 163 (413)
.+++.|+...
T Consensus 101 ~l~V~~a~~~ 110 (127)
T 2a3j_A 101 PLVITFSETP 110 (127)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEccCc
Confidence 4555555433
No 292
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=2.7e-15 Score=115.67 Aligned_cols=84 Identities=12% Similarity=0.302 Sum_probs=74.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccE-EEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGY-GFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~-afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
+...-.|||+||++.+|+++|+++|++||.|.+|++..+. +|| |||+|.+.++|.+|++.|||..|.+..+.++
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 4456678899999999999999999999999999988643 477 9999999999999999999999988778899
Q ss_pred eeeccCCCCC
Q 015091 157 LNWASFGAGE 166 (413)
Q Consensus 157 ~~~~~~~~~~ 166 (413)
+.+++.....
T Consensus 100 I~~ak~~~l~ 109 (130)
T 3zzy_A 100 IDFSKLTSLN 109 (130)
T ss_dssp EEECSCSSCC
T ss_pred EEecCCCcee
Confidence 9998766443
No 293
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.62 E-value=3e-16 Score=123.70 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=74.5
Q ss_pred cEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeeeeccCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcce
Q 015091 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203 (413)
Q Consensus 124 g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~ 203 (413)
++|+.+|.-++.+..++...... ..+... ................++|||+|||+++++++|+++| +.|| |.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~----g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F-~~~G-i~~ 74 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQM----GRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFF-SPLN-PVR 74 (139)
T ss_dssp ------------------------------------------------CCCCEECCSCCTTCCHHHHHHHH-CSCC-CSE
T ss_pred CcccccccCccccchhcccchhc-cCCCCC----CCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcC-CeE
Confidence 57788888777777776543322 111110 0000111112234556799999999999999999999 8999 779
Q ss_pred eEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCCCCc
Q 015091 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256 (413)
Q Consensus 204 ~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 256 (413)
|.++.+.. ++++|||||+|.+.++|++|+ .+++..+.++.|+|..+.....
T Consensus 75 v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 75 VHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp EECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred EEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 99999875 999999999999999999999 8999999999999988876543
No 294
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=1e-15 Score=131.25 Aligned_cols=81 Identities=26% Similarity=0.563 Sum_probs=72.8
Q ss_pred CCCCceEEEecCCCCC---------CHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCcee------
Q 015091 279 DPNNTTVFVGNLDSIV---------TDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQL------ 343 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~---------~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~------ 343 (413)
...+++|||+||+..+ ++++|+++|++||.|++|.|..++++|||+|.+.++|..|+..|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 4567999999999998 7999999999999999999999999999999999999999999999999
Q ss_pred ------CCeeEEEEeccCCCCC
Q 015091 344 ------GGQNIRLSWGRSPSNK 359 (413)
Q Consensus 344 ------~g~~l~v~~~~~~~~~ 359 (413)
.|+.|.|+||+...+.
T Consensus 211 e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TGGGGGGSCCCEEEECC-----
T ss_pred cccccCCCCEEEEEEccCCCCH
Confidence 8999999999876543
No 295
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.4e-15 Score=114.70 Aligned_cols=84 Identities=15% Similarity=0.383 Sum_probs=76.3
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccc------
Q 015091 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC------ 241 (413)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~------ 241 (413)
......++|||+||+.++++++|+++| +.||.|..+.++.+. ++.++|||||+|.+.++|++|++.|++..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENML-KPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTT-TTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 345567899999999999999999999 899999999999998 999999999999999999999999999999
Q ss_pred --cCcceEeccCCC
Q 015091 242 --STRPMRIGPATN 253 (413)
Q Consensus 242 --~g~~i~v~~~~~ 253 (413)
.++.|.|.++.+
T Consensus 98 ~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 98 SAPTEPLLCKFSGP 111 (114)
T ss_dssp CCCSSCBEEEECCC
T ss_pred cCCCCceeEEccCC
Confidence 567788887764
No 296
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-15 Score=116.77 Aligned_cols=85 Identities=21% Similarity=0.338 Sum_probs=78.9
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEecc
Q 015091 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (413)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 250 (413)
...++|||+||+.++++++|+++| +.||.|..+.++.+..++.++|||||+|.+.++|.+|++. ++..|.|+.|+|.+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYY-EQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHH-TSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 345799999999999999999999 8999999999999988999999999999999999999976 99999999999999
Q ss_pred CCCCCcc
Q 015091 251 ATNKKTV 257 (413)
Q Consensus 251 ~~~~~~~ 257 (413)
+..+...
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9887543
No 297
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=1.4e-14 Score=111.24 Aligned_cols=80 Identities=20% Similarity=0.295 Sum_probs=70.1
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccE-EEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGY-GFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~-afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
.....|||+||++.+|+++|+++|++||.|.+|++... .|| |||+|.+.++|.+|++.|||..|.++.+.+++
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 33455789999999999999999999999999999752 186 99999999999999999999999887778888
Q ss_pred eeccCCC
Q 015091 158 NWASFGA 164 (413)
Q Consensus 158 ~~~~~~~ 164 (413)
.++....
T Consensus 97 ~~Ak~~~ 103 (124)
T 2e5i_A 97 EYARPTR 103 (124)
T ss_dssp ECCSCSC
T ss_pred EEecCCc
Confidence 8887654
No 298
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.61 E-value=1.9e-15 Score=116.60 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=76.3
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCC---cceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcce
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPS---TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~---v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 246 (413)
....++|||+||++++++++|+++| +.||. |..++++.+.. ++++|||||+|.+.++|++|++ +++..|.|+.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFL-SDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHT-TTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHH-HHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 4557899999999999999999999 89999 89999999985 9999999999999999999997 99999999999
Q ss_pred EeccCCCCC
Q 015091 247 RIGPATNKK 255 (413)
Q Consensus 247 ~v~~~~~~~ 255 (413)
+|.++..+.
T Consensus 91 ~V~~a~~~~ 99 (118)
T 2db1_A 91 EVFKSHRTE 99 (118)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999886543
No 299
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=114.46 Aligned_cols=84 Identities=18% Similarity=0.315 Sum_probs=76.0
Q ss_pred CCCCCceEEecCCCCCC------CHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCcccc
Q 015091 169 DDTPDHTIFVGDLAADV------TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS 242 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~------~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 242 (413)
....+++|||+|||..+ ++++|+++| +.||.|..+.++ ..+|+++|||||+|.+.++|.+|++.|++..+.
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F-~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIF-SKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHH-GGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHH-hcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 34557899999999999 789999999 899999999887 458899999999999999999999999999999
Q ss_pred Cc-ceEeccCCCCC
Q 015091 243 TR-PMRIGPATNKK 255 (413)
Q Consensus 243 g~-~i~v~~~~~~~ 255 (413)
|+ .|+|.++....
T Consensus 88 g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 88 KQHTFRVNLFTDFD 101 (105)
T ss_dssp TTCEEEEECSCCCC
T ss_pred CCceEEEEEcchHh
Confidence 99 99999987654
No 300
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.9e-15 Score=111.95 Aligned_cols=77 Identities=23% Similarity=0.393 Sum_probs=67.6
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
...+.++|||+|||.++|+++|+++|+.||.|.+|++.+++ |||||+|.+.++|.+|++.||+..+.++.+ +
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k------g~afV~f~~~~~a~~a~~~l~g~~~~g~~l--~ 82 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIRLETRTLAEIAKVELDNMPLRGKQL--R 82 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTT------TEEEEECSSSHHHHHHHHHHTTCCBTTBCC--E
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC------CEEEEEECCHHHHHHHHHHhCCCEeCCceE--E
Confidence 34577899999999999999999999999999999998654 899999999999999999999999977554 4
Q ss_pred eeecc
Q 015091 157 LNWAS 161 (413)
Q Consensus 157 ~~~~~ 161 (413)
+.++.
T Consensus 83 v~~a~ 87 (99)
T 2cpj_A 83 VRFAC 87 (99)
T ss_dssp EEESS
T ss_pred EEEcC
Confidence 45444
No 301
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1e-15 Score=119.38 Aligned_cols=84 Identities=17% Similarity=0.334 Sum_probs=77.1
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
....++|||+|||+++++++|+++| +.||.|..+.++.+..+++++|||||+|.+.++|++|++ +++..|.|+.|.|.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFF-KKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHS-CSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHH-HhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 4556899999999999999999999 899999997777777799999999999999999999997 99999999999999
Q ss_pred cCCCCC
Q 015091 250 PATNKK 255 (413)
Q Consensus 250 ~~~~~~ 255 (413)
++..+.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987643
No 302
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.8e-15 Score=111.98 Aligned_cols=87 Identities=31% Similarity=0.441 Sum_probs=77.7
Q ss_pred CCCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcce
Q 015091 167 KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (413)
Q Consensus 167 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 246 (413)
.......++|||+||+.++++++|+++| +.| ..+.++.+..+++++|||||+|.+.++|++|++.|++..|.|+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESF-DGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 84 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTS-TTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHh-cCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 3446678899999999999999999999 655 478888898899999999999999999999999999999999999
Q ss_pred EeccCCCCCcc
Q 015091 247 RIGPATNKKTV 257 (413)
Q Consensus 247 ~v~~~~~~~~~ 257 (413)
+|.++..+...
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 2fc8_A 85 TLDWAKPKGEG 95 (102)
T ss_dssp EEEECCCCCSS
T ss_pred EEEEecCCCCC
Confidence 99999876543
No 303
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=116.99 Aligned_cols=87 Identities=26% Similarity=0.446 Sum_probs=77.0
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
..++++|||+||+.++++++|+++| +.||.|..+.+..+..+++++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f-~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLF-ARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHT-HHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4567899999999999999999999 899999766554444488999999999999999999999999999999999999
Q ss_pred cCCCCCcc
Q 015091 250 PATNKKTV 257 (413)
Q Consensus 250 ~~~~~~~~ 257 (413)
++..+...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99886544
No 304
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.61 E-value=2.7e-15 Score=111.33 Aligned_cols=75 Identities=17% Similarity=0.265 Sum_probs=64.7
Q ss_pred CCCCcceeeecCCCC-CCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcce
Q 015091 77 QPGEIRTLWIGDLQY-WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~ 155 (413)
...+.++|||+||+. ++++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.||+..+.++. +
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~--l 87 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKK--L 87 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEE--C
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEE--E
Confidence 345689999999998 99999999999999999999983 489999999999999999999999997654 4
Q ss_pred eeeecc
Q 015091 156 RLNWAS 161 (413)
Q Consensus 156 ~~~~~~ 161 (413)
++.++.
T Consensus 88 ~V~~a~ 93 (97)
T 2xnq_A 88 ILEVSS 93 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 454443
No 305
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=5.1e-16 Score=116.55 Aligned_cols=84 Identities=17% Similarity=0.363 Sum_probs=76.3
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
....++|||+||+.++++++|+++| +.||.|.. .++.+..+++++|||||+|.+.++|++|++ |++..+.|+.|+|.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAI-SELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHH-HHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 4567899999999999999999999 89999988 666676788999999999999999999998 99999999999999
Q ss_pred cCCCCCc
Q 015091 250 PATNKKT 256 (413)
Q Consensus 250 ~~~~~~~ 256 (413)
++..+..
T Consensus 91 ~a~~~~~ 97 (101)
T 1fj7_A 91 KPKGRDG 97 (101)
T ss_dssp CCSCCCC
T ss_pred EcCCCCC
Confidence 9987654
No 306
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=109.52 Aligned_cols=74 Identities=18% Similarity=0.367 Sum_probs=67.8
Q ss_pred CceEEecCCCCCC------CHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCc-c
Q 015091 173 DHTIFVGDLAADV------TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR-P 245 (413)
Q Consensus 173 ~~~l~v~~lp~~~------~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~-~ 245 (413)
+++|||+|||.++ ++++|+++| +.||.|.++.+. ..+|+++|||||+|.+.++|.+|++.|++..+.|+ .
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F-~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIF-SKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHH-HTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHH-hhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCcee
Confidence 3689999999999 779999999 899999999877 45889999999999999999999999999999999 8
Q ss_pred eEec
Q 015091 246 MRIG 249 (413)
Q Consensus 246 i~v~ 249 (413)
|+|+
T Consensus 78 l~V~ 81 (81)
T 2krb_A 78 FRVN 81 (81)
T ss_dssp CCCC
T ss_pred EEeC
Confidence 8773
No 307
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=114.47 Aligned_cols=79 Identities=20% Similarity=0.385 Sum_probs=72.6
Q ss_pred CCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccC
Q 015091 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (413)
Q Consensus 172 ~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 251 (413)
...+|||+|||+++++++|+++| +.| .|.+|.++.+. +|+++|||||+|.+.++|++|+ .+++..++|+.|.|..+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F-~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFF-HGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHT-TTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHh-ccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 35789999999999999999999 889 89999999987 4999999999999999999999 79999999999999887
Q ss_pred CCC
Q 015091 252 TNK 254 (413)
Q Consensus 252 ~~~ 254 (413)
..+
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 653
No 308
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.60 E-value=1.9e-15 Score=116.76 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=67.4
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceE--EEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcc
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVV--AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~--~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~ 154 (413)
.....++|||+|||+++|+++|+++|+.| .|+ +|+|++++. |+++|||||+|.+.++|++|++. ++..|.++.+.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 34567889999999999999999999999 666 999999986 99999999999999999999975 77888766554
Q ss_pred eee
Q 015091 155 FRL 157 (413)
Q Consensus 155 ~~~ 157 (413)
|..
T Consensus 115 V~~ 117 (126)
T 2hgm_A 115 VFK 117 (126)
T ss_dssp CEE
T ss_pred EEE
Confidence 443
No 309
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.9e-15 Score=107.84 Aligned_cols=75 Identities=27% Similarity=0.461 Sum_probs=65.9
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHh-CCCcCCCCCcce
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF-NGTPMPNGEQNF 155 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l-~g~~~~~~~~~~ 155 (413)
.....++|||+|||.++++++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|++.| ++..+.++. +
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~--l 79 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR--L 79 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEE--C
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCE--E
Confidence 4566899999999999999999999999999999999875 389999999999999999988 998887654 4
Q ss_pred eeee
Q 015091 156 RLNW 159 (413)
Q Consensus 156 ~~~~ 159 (413)
++.|
T Consensus 80 ~v~~ 83 (85)
T 2ytc_A 80 NVKW 83 (85)
T ss_dssp CEEE
T ss_pred EEEe
Confidence 4444
No 310
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.60 E-value=7.7e-16 Score=116.04 Aligned_cols=77 Identities=12% Similarity=0.091 Sum_probs=68.2
Q ss_pred ceeeecCC----CCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcC----HHH----HHHHHH--HhCCCc
Q 015091 82 RTLWIGDL----QYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFIS----RAG----AERVLQ--TFNGTP 147 (413)
Q Consensus 82 ~~l~v~~l----p~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~----~~~----A~~a~~--~l~g~~ 147 (413)
..|||+|| ++.+++.+|+++|+.||.|.+|.++.|+.||+++|||||+|.+ +++ |.+|+. .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 9999999999999999999999999999999999999999996 333 888888 689999
Q ss_pred CCCCCcceeee
Q 015091 148 MPNGEQNFRLN 158 (413)
Q Consensus 148 ~~~~~~~~~~~ 158 (413)
|.++.+.|.++
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 98877666664
No 311
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.2e-15 Score=117.62 Aligned_cols=72 Identities=11% Similarity=0.170 Sum_probs=65.0
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCce----EEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCC
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEV----VAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG 151 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v----~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~ 151 (413)
..+.++|||+|||+++|+++|+++|+.||.| .+|+|++++ +|+++|||||+|.+.++|++|++. |+..|.++
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR 95 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR 95 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe
Confidence 3567899999999999999999999999875 699999985 899999999999999999999986 88888654
No 312
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=8.8e-15 Score=107.17 Aligned_cols=79 Identities=19% Similarity=0.393 Sum_probs=73.0
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
....++|||+||+.++++++|+++| +.||.|..+.++ ++||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLF-EQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHH-HTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 4567899999999999999999999 899999999886 6899999999999999999999999999999999
Q ss_pred cCCCCCcc
Q 015091 250 PATNKKTV 257 (413)
Q Consensus 250 ~~~~~~~~ 257 (413)
++..+...
T Consensus 76 ~a~~~~~~ 83 (90)
T 2dnq_A 76 ASKNKSKA 83 (90)
T ss_dssp CSSCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 313
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.59 E-value=1.9e-15 Score=121.10 Aligned_cols=80 Identities=24% Similarity=0.419 Sum_probs=70.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHhcCCCeEE--------EEe---eCCCcEEEEEecCHHHHHHHHHHhcCceeCCee
Q 015091 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVH--------VKI---PAGKRCGFVQFADRSCAEEALRMLNGTQLGGQN 347 (413)
Q Consensus 279 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------v~~---~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~ 347 (413)
...+++|||+||+.++++++|+++|+.||.|.. +.+ .+.+|+|||+|.+.++|.+|+..|||..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 345689999999999999999999999998765 333 355899999999999999999999999999999
Q ss_pred EEEEeccCCCC
Q 015091 348 IRLSWGRSPSN 358 (413)
Q Consensus 348 l~v~~~~~~~~ 358 (413)
|+|.|++....
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999987543
No 314
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.4e-15 Score=111.99 Aligned_cols=83 Identities=23% Similarity=0.345 Sum_probs=74.2
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEe
Q 015091 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 248 (413)
.....++|||+||+.++++++|+++| +.||.| .++.+ .+++++|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVF-EKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHC-SSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 45678899999999999999999999 888876 45555 58899999999999999999999999999999999999
Q ss_pred ccCCCCCc
Q 015091 249 GPATNKKT 256 (413)
Q Consensus 249 ~~~~~~~~ 256 (413)
.++..+..
T Consensus 86 ~~a~~~~~ 93 (101)
T 2fc9_A 86 ELQGPRGS 93 (101)
T ss_dssp EECSSCCC
T ss_pred EEcCCCCC
Confidence 99987654
No 315
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=5.2e-15 Score=110.99 Aligned_cols=77 Identities=16% Similarity=0.230 Sum_probs=71.1
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
....++|||+||+.++++++|+++| +.||.|.++.+. +++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f-~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLF-QNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHH-HTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHH-HhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3446799999999999999999999 899999999987 458999999999999999999999999999999999
Q ss_pred cCCC
Q 015091 250 PATN 253 (413)
Q Consensus 250 ~~~~ 253 (413)
++..
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 9865
No 316
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.59 E-value=1.7e-15 Score=114.74 Aligned_cols=84 Identities=14% Similarity=0.218 Sum_probs=76.4
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHhhhCCC---cceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcc
Q 015091 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPS---TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~---v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 245 (413)
.....++|||+||++++++++|+++| +.||. |..+.++.+.. |+++|||||+|.+.++|++|++ +++..++|+.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F-~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFF-SDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHT-TTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHH-HhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34567899999999999999999999 89888 89999999886 9999999999999999999997 9999999999
Q ss_pred eEeccCCCCC
Q 015091 246 MRIGPATNKK 255 (413)
Q Consensus 246 i~v~~~~~~~ 255 (413)
|+|.++..+.
T Consensus 84 i~V~~a~~~~ 93 (107)
T 2lmi_A 84 VEVYEINNED 93 (107)
T ss_dssp CCCEECCHHH
T ss_pred EEEEECCHHH
Confidence 9999887643
No 317
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=108.18 Aligned_cols=81 Identities=16% Similarity=0.308 Sum_probs=72.5
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEe
Q 015091 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 248 (413)
.....++|||+||+.++++++|+++| +.||.|. +.++.+ .++|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F-~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRAL-RELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHH-HHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHH-HhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34557899999999999999999999 8999997 666643 57899999999999999999999999999999999
Q ss_pred ccCCCCC
Q 015091 249 GPATNKK 255 (413)
Q Consensus 249 ~~~~~~~ 255 (413)
.++..+.
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9987754
No 318
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.59 E-value=4.1e-15 Score=123.09 Aligned_cols=80 Identities=19% Similarity=0.347 Sum_probs=72.6
Q ss_pred CCCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
.....++|||+||+.++++++|+++|+.||.|.+|.|+.++ +++++|||||+|.+.++|.+|++.||+..+.++.+.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999999977555444
Q ss_pred e
Q 015091 157 L 157 (413)
Q Consensus 157 ~ 157 (413)
+
T Consensus 163 ~ 163 (177)
T 2f3j_A 163 L 163 (177)
T ss_dssp E
T ss_pred E
Confidence 4
No 319
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7.9e-15 Score=111.60 Aligned_cols=79 Identities=18% Similarity=0.456 Sum_probs=69.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
....++|||+|||.++++++|+++|+.||.|.+|+++++ +|||||+|.+.++|.+|++.|++..+.+ ..+++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v 93 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEG--HVVKC 93 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETT--EECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECC--cEEEE
Confidence 456789999999999999999999999999999999987 3899999999999999999999999966 45666
Q ss_pred eeccCCC
Q 015091 158 NWASFGA 164 (413)
Q Consensus 158 ~~~~~~~ 164 (413)
.|+....
T Consensus 94 ~~a~~~~ 100 (109)
T 1x4g_A 94 YWGKESP 100 (109)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 6665443
No 320
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.59 E-value=1.2e-15 Score=107.79 Aligned_cols=75 Identities=23% Similarity=0.389 Sum_probs=70.5
Q ss_pred eEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccC
Q 015091 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (413)
Q Consensus 175 ~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 251 (413)
+|||+|||.++++++|+++| +.||.|..+.++.+..++.++|||||+|.+.++|.+|++ +++..+.|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYF-GGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHH-HHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999 899999999999998899999999999999999999996 5889999999999764
No 321
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=8e-15 Score=108.74 Aligned_cols=76 Identities=14% Similarity=0.246 Sum_probs=65.4
Q ss_pred CCCCcceeeecCCCC-CCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcce
Q 015091 77 QPGEIRTLWIGDLQY-WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~ 155 (413)
...+.++|||+|||+ ++++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.||+..+.++.+.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345789999999998 99999999999999999999984 489999999999999999999999998766665
Q ss_pred eeeec
Q 015091 156 RLNWA 160 (413)
Q Consensus 156 ~~~~~ 160 (413)
.....
T Consensus 78 ~~a~~ 82 (96)
T 2kvi_A 78 EVSSS 82 (96)
T ss_dssp EEEEC
T ss_pred EEcCc
Confidence 55433
No 322
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.58 E-value=1.6e-15 Score=113.98 Aligned_cols=76 Identities=26% Similarity=0.512 Sum_probs=67.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCccee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 156 (413)
....++|||+|||.++++++|+++|+.||.|.+|+++.++ +|+++|||||+|.+.++|.+|++ ++..+.++.+.+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLG 81 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEE
Confidence 4567899999999999999999999999999999999998 89999999999999999999998 7777755444433
No 323
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.1e-15 Score=114.66 Aligned_cols=81 Identities=19% Similarity=0.165 Sum_probs=72.8
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHhhhCCCc----ceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcce
Q 015091 171 TPDHTIFVGDLAADVTDYMLQETFRARYPST----KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (413)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v----~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 246 (413)
....+|||+|||+++++++|+++| +.||.| ..|.++.+. +|+++|||||+|.+.++|++|++. ++..+.++.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F-~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFF-GQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHH-HTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 456799999999999999999999 899875 689999884 899999999999999999999965 9999999999
Q ss_pred EeccCCCC
Q 015091 247 RIGPATNK 254 (413)
Q Consensus 247 ~v~~~~~~ 254 (413)
+|..+..+
T Consensus 98 ~V~~a~~~ 105 (123)
T 2dha_A 98 ELFRSTAA 105 (123)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 99887654
No 324
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.58 E-value=4.2e-15 Score=112.40 Aligned_cols=79 Identities=15% Similarity=0.131 Sum_probs=70.8
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHhhhCC-CcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 171 TPDHTIFVGDLAADVTDYMLQETFRARYP-STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g-~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
...++|||+|||+++++++|+++| +.|| .|..+.+.. ++++|||||+|.+.++|++|++.||+..+.|+.|+|.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F-~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLA-RENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHH-HHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHH-HHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 456799999999999999999999 8999 899888742 3579999999999999999999999999999999999
Q ss_pred cCCCC
Q 015091 250 PATNK 254 (413)
Q Consensus 250 ~~~~~ 254 (413)
++...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98654
No 325
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.57 E-value=1.9e-15 Score=112.54 Aligned_cols=82 Identities=21% Similarity=0.422 Sum_probs=69.9
Q ss_pred CCCCcceeeecCCCCCCCHHHHH----HHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCC
Q 015091 77 QPGEIRTLWIGDLQYWMDETYLN----TCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~~~~~l~----~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~ 152 (413)
+..++++|||+|||.++++++|+ ++|+.||.|.+|++.+ +|+++|||||+|.+.++|.+|++.|||..+.+
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-- 78 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD-- 78 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETT--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC--
Confidence 34568999999999999999999 9999999999999873 47788999999999999999999999999965
Q ss_pred cceeeeeccCC
Q 015091 153 QNFRLNWASFG 163 (413)
Q Consensus 153 ~~~~~~~~~~~ 163 (413)
..+++.++...
T Consensus 79 ~~l~v~~a~~~ 89 (97)
T 1nu4_A 79 KPMRIQYAKTD 89 (97)
T ss_dssp EECEEEECSSC
T ss_pred cEEEEEEccCC
Confidence 55566655543
No 326
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.57 E-value=4.7e-15 Score=111.78 Aligned_cols=80 Identities=13% Similarity=0.184 Sum_probs=71.8
Q ss_pred ceEEecCC----CCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCC----HHH----HHHHHH--hhCCc
Q 015091 174 HTIFVGDL----AADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGD----ESE----QLRAMT--EMNGV 239 (413)
Q Consensus 174 ~~l~v~~l----p~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~----~~~----a~~a~~--~l~~~ 239 (413)
.+|||+|| ++.+++++|+++| +.||+|.++.++.|+.||+++|||||+|.+ .++ |.+|++ .+++.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~F-s~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYF-KKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHH-HTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 58999999 9999999999999 899999999999999999999999999996 322 788888 78999
Q ss_pred cccCcceEeccCCCC
Q 015091 240 FCSTRPMRIGPATNK 254 (413)
Q Consensus 240 ~~~g~~i~v~~~~~~ 254 (413)
.|+|+.|+|......
T Consensus 82 ~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 82 FIMGFKFEVILNKHS 96 (136)
T ss_dssp EETTEEEEEEECCTT
T ss_pred eecCcEEEEEECccc
Confidence 999999999876553
No 327
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.57 E-value=1.8e-14 Score=108.44 Aligned_cols=80 Identities=26% Similarity=0.411 Sum_probs=72.7
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
....++|||+||+.++++++|+++| +.||.|..+.++ ++||||+|.+.++|++|++.|++..+.|+.|.|.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F-~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAF-SQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHH-HHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 4567899999999999999999999 899999998875 5699999999999999999999999999999999
Q ss_pred cCCCCCccC
Q 015091 250 PATNKKTVS 258 (413)
Q Consensus 250 ~~~~~~~~~ 258 (413)
++..+....
T Consensus 79 ~a~~~~~~~ 87 (103)
T 2dgu_A 79 FAKPPDQKR 87 (103)
T ss_dssp ECCCCCCCC
T ss_pred EcCCCcccc
Confidence 998766544
No 328
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.57 E-value=1.2e-14 Score=110.16 Aligned_cols=78 Identities=22% Similarity=0.454 Sum_probs=72.3
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEe
Q 015091 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 248 (413)
.....++|||+||+.++++++|+++| +.||.|..+.++ +|||||+|.+.++|++|++.|++..+.|+.|.|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F-~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIF-GPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHH-TTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHH-HhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 45667899999999999999999999 899999999987 789999999999999999999999999999999
Q ss_pred ccCCCCC
Q 015091 249 GPATNKK 255 (413)
Q Consensus 249 ~~~~~~~ 255 (413)
.++....
T Consensus 98 ~~a~~~~ 104 (108)
T 2jvo_A 98 VYSKLPA 104 (108)
T ss_dssp ESCSCCC
T ss_pred EEecCCC
Confidence 9987754
No 329
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.6e-15 Score=110.85 Aligned_cols=77 Identities=21% Similarity=0.297 Sum_probs=64.1
Q ss_pred CCCcceeee--cCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcC---CCCC
Q 015091 78 PGEIRTLWI--GDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM---PNGE 152 (413)
Q Consensus 78 ~~~~~~l~v--~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~---~~~~ 152 (413)
..++++||| +||++++|+++|+++|++||.|.+|.+..+ +|||||+|.+.++|++|++.|||+.+ .+..
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345788999 779999999999999999999999988643 48999999999999999999999876 2334
Q ss_pred cceeeeec
Q 015091 153 QNFRLNWA 160 (413)
Q Consensus 153 ~~~~~~~~ 160 (413)
..+.+.++
T Consensus 96 ~~l~v~~a 103 (114)
T 2cq2_A 96 ITLYLNFV 103 (114)
T ss_dssp EECEEEEE
T ss_pred cEEEEEec
Confidence 45555443
No 330
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=106.57 Aligned_cols=79 Identities=25% Similarity=0.402 Sum_probs=72.3
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEe
Q 015091 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 248 (413)
.....++|||+||+.++++++|+++| +.||.|..+.++ ++||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLF-ERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHH-HHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 45677899999999999999999999 899999999886 459999999999999999999999999999999
Q ss_pred ccCCCCCc
Q 015091 249 GPATNKKT 256 (413)
Q Consensus 249 ~~~~~~~~ 256 (413)
.++.....
T Consensus 76 ~~a~~~~~ 83 (90)
T 2dnp_A 76 ELSTKGQK 83 (90)
T ss_dssp EESCCCCC
T ss_pred EECCCCCC
Confidence 99987644
No 331
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.57 E-value=1e-14 Score=111.93 Aligned_cols=67 Identities=18% Similarity=0.275 Sum_probs=61.2
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCC
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~ 152 (413)
...++|||+|||+++|+++|+++|+.||.|.+|.|+.+ |||||+|.+.++|++|++.||+..|.++.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 45789999999999999999999999999999999765 89999999999999999999999998876
No 332
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=6.2e-15 Score=112.31 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=66.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
....++|||+|||.++++++|+++|+.||.|.+|.+..+ ++||||+|.+.++|.+|++.|||..+.++. +++
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~--l~V 78 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG------GITAIVEFLEPLEARKAFRHLAYSKFHHVP--LYL 78 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS------SSCEEEEESCHHHHHHHHHHHTTCBSSSSB--CEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCEECCeE--EEE
Confidence 345789999999999999999999999999999998753 489999999999999999999999997654 555
Q ss_pred eecc
Q 015091 158 NWAS 161 (413)
Q Consensus 158 ~~~~ 161 (413)
.|+.
T Consensus 79 ~~a~ 82 (111)
T 1whx_A 79 EWAP 82 (111)
T ss_dssp EEEE
T ss_pred EECC
Confidence 5554
No 333
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.56 E-value=3.2e-15 Score=112.39 Aligned_cols=76 Identities=28% Similarity=0.501 Sum_probs=69.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccC
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 355 (413)
..++|||+||+.++++++|+++|+.||.|.++.+..+ +|+|||+|.+.++|.+|+. ++..|+|+.|.|.++..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 4589999999999999999999999999999999764 6899999999999999999 89999999999999876
Q ss_pred CCC
Q 015091 356 PSN 358 (413)
Q Consensus 356 ~~~ 358 (413)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 543
No 334
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=5.6e-15 Score=109.70 Aligned_cols=83 Identities=18% Similarity=0.314 Sum_probs=73.6
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceE
Q 015091 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (413)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 247 (413)
......++|||+||+.++++++|+++| +.||.|..+ ..++.++|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F-~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVF-EDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHH-CSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHH-hhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 345567899999999999999999999 889887765 34788999999999999999999999999999999999
Q ss_pred eccCCCCCc
Q 015091 248 IGPATNKKT 256 (413)
Q Consensus 248 v~~~~~~~~ 256 (413)
|.++..+..
T Consensus 85 v~~a~~~~~ 93 (96)
T 1fjc_A 85 LYYTGEKGG 93 (96)
T ss_dssp EEECSSSCC
T ss_pred EEEcCCCCC
Confidence 999877543
No 335
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.55 E-value=2.8e-14 Score=106.92 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=67.2
Q ss_pred CCCceEEEecCCC-----CCCHHHHHHHHhcCCCeEEEEeeC-------CCcEEEEEecCHHHHHHHHHHhcCceeCCee
Q 015091 280 PNNTTVFVGNLDS-----IVTDEHLRELFSQYGQLVHVKIPA-------GKRCGFVQFADRSCAEEALRMLNGTQLGGQN 347 (413)
Q Consensus 280 ~~~~~l~v~nlp~-----~~~~~~l~~~f~~~G~i~~v~~~~-------~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~ 347 (413)
..+++|+|.|+-. +-++++|+++|++||.|.+|.|.+ .+|+|||+|.+.++|.+|+..|||+.|+||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3578999999963 237899999999999999999964 3789999999999999999999999999999
Q ss_pred EEEEeccC
Q 015091 348 IRLSWGRS 355 (413)
Q Consensus 348 l~v~~~~~ 355 (413)
|+|.|+..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 336
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.8e-14 Score=104.97 Aligned_cols=80 Identities=18% Similarity=0.371 Sum_probs=72.8
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEe
Q 015091 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 248 (413)
.....++|||+||+.++++++|+++| +.||.|..+.++ ++||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKF-EEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHH-HTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 35667899999999999999999999 899999999886 459999999999999999999999999999999
Q ss_pred ccCCCCCcc
Q 015091 249 GPATNKKTV 257 (413)
Q Consensus 249 ~~~~~~~~~ 257 (413)
.++..+...
T Consensus 77 ~~a~~~~~~ 85 (92)
T 2dgt_A 77 QLSTSRLRT 85 (92)
T ss_dssp EESSCCCSC
T ss_pred EEccCCCCC
Confidence 999876543
No 337
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.32 E-value=3.7e-16 Score=120.48 Aligned_cols=87 Identities=28% Similarity=0.369 Sum_probs=80.5
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcce--------eEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccc
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG--------AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~--------~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~ 241 (413)
..+.++|||+||+.++++++|+++| +.||.|.. +.++.+..+++++|||||+|.+.++|++|++.|++..+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYF-KQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567899999999999999999999 89999998 88999988899999999999999999999999999999
Q ss_pred cCcceEeccCCCCCcc
Q 015091 242 STRPMRIGPATNKKTV 257 (413)
Q Consensus 242 ~g~~i~v~~~~~~~~~ 257 (413)
.|+.|+|.++..+...
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999876543
No 338
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=8.9e-15 Score=112.18 Aligned_cols=69 Identities=20% Similarity=0.389 Sum_probs=62.3
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCC---CCcccEEEEEEcCHHHHHHHHHHh---CCCc
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQT---GQIEGYGFIEFISRAGAERVLQTF---NGTP 147 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---g~~~g~afV~f~~~~~A~~a~~~l---~g~~ 147 (413)
....++|||+|||+++|+++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|++|++.| +|+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~ 79 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKL 79 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcE
Confidence 35679999999999999999999999999999 888888776 799999999999999999999988 5543
No 339
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.54 E-value=8.1e-15 Score=106.77 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=63.1
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceee
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 157 (413)
.....+|||+|||+++|+++|+++|++||.|.+|+++++ ++|||||+|.+.++|.+ +++..+.++++.+++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 456789999999999999999999999999999999874 56999999999999983 567676666777887
Q ss_pred eeccCC
Q 015091 158 NWASFG 163 (413)
Q Consensus 158 ~~~~~~ 163 (413)
.++..+
T Consensus 79 ~~a~~k 84 (89)
T 3d2w_A 79 SNAEPK 84 (89)
T ss_dssp EECC--
T ss_pred EEcCCC
Confidence 776543
No 340
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=4.1e-14 Score=104.46 Aligned_cols=80 Identities=19% Similarity=0.332 Sum_probs=70.7
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
....++|||+||+.++++++|+++| +.||.|..| +.+..+++ ||||+|.+.++|.+|++ |++..+.|+.|.|.
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F-~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYF-LAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVR 77 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHG-GGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCB
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHH-HhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEE
Confidence 3456799999999999999999999 899999976 66665665 99999999999999998 99999999999999
Q ss_pred cCCCCCc
Q 015091 250 PATNKKT 256 (413)
Q Consensus 250 ~~~~~~~ 256 (413)
++..+..
T Consensus 78 ~a~~~~~ 84 (94)
T 2e5g_A 78 PREQKEF 84 (94)
T ss_dssp CSCCSCC
T ss_pred ECCcCCC
Confidence 8876544
No 341
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=4e-14 Score=105.65 Aligned_cols=79 Identities=19% Similarity=0.410 Sum_probs=70.9
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHhhhC--CCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcce
Q 015091 169 DDTPDHTIFVGDLAADVTDYMLQETFRARY--PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~--g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 246 (413)
.....++|||+||+.++++++|+++| +.| |.|..+.+. ++||||+|.+.++|++|++.|++..+.|+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEF-NNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHH-HTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHH-HhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 34567899999999999999999999 899 888877653 6799999999999999999999999999999
Q ss_pred EeccCCCCCc
Q 015091 247 RIGPATNKKT 256 (413)
Q Consensus 247 ~v~~~~~~~~ 256 (413)
+|.++..+..
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpd_A 82 EVTLAKPVDK 91 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEEECCCCCC
Confidence 9999987653
No 342
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.54 E-value=6.8e-15 Score=113.65 Aligned_cols=81 Identities=16% Similarity=0.221 Sum_probs=71.9
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcc--eeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceE
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTK--GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~--~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 247 (413)
....++|||+|||+++++++|+++| +.| .|. +|.++.+.. |+++|||||+|.+.++|++|++ +++..|+|+.|+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F-~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFF-SGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHT-TTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-hcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 3456789999999999999999999 889 677 888888875 9999999999999999999996 577999999999
Q ss_pred eccCCCC
Q 015091 248 IGPATNK 254 (413)
Q Consensus 248 v~~~~~~ 254 (413)
|..+..+
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9887543
No 343
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.7e-14 Score=106.84 Aligned_cols=81 Identities=21% Similarity=0.287 Sum_probs=69.5
Q ss_pred CCCCCceEEEecCCCCCC-----------HHHHHHHHhcCCCeEEEEeeC--CCcEEEEEecCHHHHHHHHHHhcCceeC
Q 015091 278 DDPNNTTVFVGNLDSIVT-----------DEHLRELFSQYGQLVHVKIPA--GKRCGFVQFADRSCAEEALRMLNGTQLG 344 (413)
Q Consensus 278 ~~~~~~~l~v~nlp~~~~-----------~~~l~~~f~~~G~i~~v~~~~--~~~~afV~f~~~~~a~~a~~~l~~~~~~ 344 (413)
....+++|+|.||-.... +++|+++|++||.|.+|.|.. .+|+|||+|.+.++|.+|+..|||..|+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 345678999999944332 589999999999999997752 4799999999999999999999999999
Q ss_pred CeeEEEEeccCCCC
Q 015091 345 GQNIRLSWGRSPSN 358 (413)
Q Consensus 345 g~~l~v~~~~~~~~ 358 (413)
|+.|+|.|+.++..
T Consensus 91 gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 GRQITAQAWDGTTD 104 (112)
T ss_dssp TEECEEEECCSCCC
T ss_pred CcEEEEEEeCCCCC
Confidence 99999999987543
No 344
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.54 E-value=1.7e-14 Score=119.30 Aligned_cols=85 Identities=32% Similarity=0.442 Sum_probs=78.9
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEec
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 249 (413)
....++|||+||+.++++++|+++| +.||.|..|.++.+. ++.++|||||+|.+.++|++|++.|++..+.|+.|.|.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F-~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELF-AEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHH-HHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456899999999999999999999 899999999999988 89999999999999999999999999999999999999
Q ss_pred cCCCCCc
Q 015091 250 PATNKKT 256 (413)
Q Consensus 250 ~~~~~~~ 256 (413)
++.....
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9876543
No 345
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=6.2e-14 Score=99.79 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=66.9
Q ss_pred CCCce-EEecCCCCCCCHHH----HHHHHhhhC-CCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCc
Q 015091 171 TPDHT-IFVGDLAADVTDYM----LQETFRARY-PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244 (413)
Q Consensus 171 ~~~~~-l~v~~lp~~~~~~~----l~~~f~~~~-g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 244 (413)
.++.+ |||+||++++++++ |+++| +.| |.|.+| ++ |+|||+|.+.++|.+|++.|++..+.|+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF-~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLS-DNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHH-HTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHH-HHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 34555 99999999999988 55899 899 599887 23 9999999999999999999999999999
Q ss_pred ceEeccCCCCCccC
Q 015091 245 PMRIGPATNKKTVS 258 (413)
Q Consensus 245 ~i~v~~~~~~~~~~ 258 (413)
.|+|.++..+....
T Consensus 75 ~i~v~~A~~~sd~~ 88 (96)
T 2diu_A 75 RIIVSFTPKNRELC 88 (96)
T ss_dssp CCEEESSCCSCCCC
T ss_pred eEEEEecCCCccee
Confidence 99999998876543
No 346
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.54 E-value=3.7e-14 Score=108.02 Aligned_cols=78 Identities=26% Similarity=0.480 Sum_probs=71.3
Q ss_pred CCCCceEEecCCCCC-CCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEe
Q 015091 170 DTPDHTIFVGDLAAD-VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~-~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 248 (413)
....++|||+||+.+ +++++|+++| +.||.|..+.+ +++||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F-~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIF-SKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHH-GGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHH-HhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345689999999999 9999999999 89999999988 4899999999999999999999999999999999
Q ss_pred ccCCCCCc
Q 015091 249 GPATNKKT 256 (413)
Q Consensus 249 ~~~~~~~~ 256 (413)
.++.....
T Consensus 95 ~~a~~~~~ 102 (110)
T 1wf1_A 95 NMAGEPKP 102 (110)
T ss_dssp EESCCCCS
T ss_pred EECCCCCC
Confidence 99976543
No 347
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.3e-14 Score=105.63 Aligned_cols=79 Identities=24% Similarity=0.429 Sum_probs=70.2
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCC-cceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCC-ccccCcceE
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMR 247 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~-v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~-~~~~g~~i~ 247 (413)
....++|||+||+.++++++|+++| +.||. |..+.+. ++|||||+|.+.++|++|++.|++ ..+.|+.|+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLF-GDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHH-HHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHH-HHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 4566899999999999999999999 89999 6666552 478999999999999999999999 999999999
Q ss_pred eccCCCCCc
Q 015091 248 IGPATNKKT 256 (413)
Q Consensus 248 v~~~~~~~~ 256 (413)
|.++..+..
T Consensus 77 v~~a~~~~~ 85 (93)
T 2cqh_A 77 VDYSVSKKL 85 (93)
T ss_dssp EEECCCCCC
T ss_pred EEEccCccc
Confidence 999987654
No 348
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.52 E-value=1.7e-14 Score=104.98 Aligned_cols=72 Identities=24% Similarity=0.521 Sum_probs=64.2
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhcc----C-------ceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHT----G-------EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGT 146 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~----G-------~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~ 146 (413)
....++|||+|||.++++++|+++|+.| | .|.+|++.++ +|||||+|.+.++|.+|+ .||+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 4578999999999999999999999999 8 8999998765 499999999999999999 99999
Q ss_pred cCCCCCccee
Q 015091 147 PMPNGEQNFR 156 (413)
Q Consensus 147 ~~~~~~~~~~ 156 (413)
.+.++.+.++
T Consensus 76 ~~~g~~l~V~ 85 (87)
T 2hzc_A 76 IFQGQSLKIR 85 (87)
T ss_dssp EETTEECEEE
T ss_pred EECCeEEEEe
Confidence 9977655443
No 349
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.52 E-value=2.5e-14 Score=104.14 Aligned_cols=78 Identities=15% Similarity=0.162 Sum_probs=70.8
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEecc
Q 015091 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (413)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 250 (413)
...++|||+|||.++++++|+++| +.| .|..+.+. +++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F-~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 74 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLL-KDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL 74 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHT-CSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-hhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEE
Confidence 356789999999999999999999 889 99999884 5689999999999999999999999999999999999
Q ss_pred CCCCCc
Q 015091 251 ATNKKT 256 (413)
Q Consensus 251 ~~~~~~ 256 (413)
+.....
T Consensus 75 a~~~~~ 80 (88)
T 1wg1_A 75 QPTDAL 80 (88)
T ss_dssp CCCCCC
T ss_pred cCCCce
Confidence 876543
No 350
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=3.8e-14 Score=105.15 Aligned_cols=81 Identities=11% Similarity=0.189 Sum_probs=71.8
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeE-EEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEe
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAK-VVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~-~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 248 (413)
....++|||+||+.++++++|+++| +.||.|..++ ++.+..++ .|||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLL-VQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHH-HHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHH-HhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456899999999999999999999 8999999994 76665443 3999999999999999999999999999999
Q ss_pred ccCCCCC
Q 015091 249 GPATNKK 255 (413)
Q Consensus 249 ~~~~~~~ 255 (413)
.++..+.
T Consensus 87 ~~a~~~~ 93 (96)
T 2e44_A 87 AYIPDEM 93 (96)
T ss_dssp EECCCCC
T ss_pred EEcCccc
Confidence 9998763
No 351
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.3e-13 Score=102.39 Aligned_cols=81 Identities=17% Similarity=0.310 Sum_probs=72.1
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceE
Q 015091 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (413)
Q Consensus 168 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 247 (413)
......++|||+|| ++++++|+++| +.||.|..+.+. .++|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F-~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 80 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAF-SPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 80 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHH-TTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHH-hhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34556789999996 89999999999 899999999883 4689999999999999999999999999999999
Q ss_pred eccCCCCCcc
Q 015091 248 IGPATNKKTV 257 (413)
Q Consensus 248 v~~~~~~~~~ 257 (413)
|.++..+...
T Consensus 81 v~~a~~~~~~ 90 (97)
T 1x5p_A 81 VNIARKQPML 90 (97)
T ss_dssp EECCSSCCCC
T ss_pred EEECCCCCCC
Confidence 9999876543
No 352
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.51 E-value=1.9e-14 Score=115.24 Aligned_cols=86 Identities=27% Similarity=0.401 Sum_probs=74.4
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeE-----EEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCc
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAK-----VVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~-----~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 244 (413)
..++++|||+||+.++++++|+++| +.||.|..+. -+....+++++|||||+|.+.++|.+|++.||+..+.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F-~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIF-GRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHH-GGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 4567899999999999999999999 8999998751 122224788999999999999999999999999999999
Q ss_pred ceEeccCCCCCc
Q 015091 245 PMRIGPATNKKT 256 (413)
Q Consensus 245 ~i~v~~~~~~~~ 256 (413)
.|.|.++.....
T Consensus 121 ~l~V~~a~~~~~ 132 (143)
T 3egn_A 121 PMVVQFARSARP 132 (143)
T ss_dssp ECEEEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999976543
No 353
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.51 E-value=1.7e-13 Score=115.10 Aligned_cols=117 Identities=15% Similarity=0.230 Sum_probs=85.6
Q ss_pred CHHHHHHHHHhh--CCccccCcceEeccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCCHHHHHHH
Q 015091 225 DESEQLRAMTEM--NGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLREL 302 (413)
Q Consensus 225 ~~~~a~~a~~~l--~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~ 302 (413)
+.+.+..|++.. ....+.+....|............ .........++|||+|||.++++++|+++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~-------------~~~~~~~~~~~l~V~nLp~~~t~~~L~~~ 129 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVT-------------DEYKNDVKNRSVYIKGFPTDATLDDIKEW 129 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCC-------------HHHHHHHHHTEEEEECCCTTCCHHHHHHH
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccc-------------hhhhhccccCEEEecCCCCcCCHHHHHHH
Confidence 567778888766 444555555555544221110000 00001123478999999999999999999
Q ss_pred HhcCCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccC
Q 015091 303 FSQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355 (413)
Q Consensus 303 f~~~G~i~~v~~~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 355 (413)
|+.||.|.+|.+.++ +|+|||+|.+.++|.+|+..+ +..|+|+.|+|.|++.
T Consensus 130 F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 130 LEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred HhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 999999999999753 789999999999999999865 5699999999999775
No 354
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=6e-14 Score=102.20 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=64.7
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcceeee
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 158 (413)
...++|||+|||.++|+++|+++|+.||.|.+|+++++ ++|||||+|.+.++|++| ++..+....+.+++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSL----CGEDLIIKGISVHIS 73 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEE
Confidence 45799999999999999999999999999999999764 569999999999999754 555565567778887
Q ss_pred eccCCC
Q 015091 159 WASFGA 164 (413)
Q Consensus 159 ~~~~~~ 164 (413)
++....
T Consensus 74 ~a~~~~ 79 (88)
T 1wf0_A 74 NAEPKH 79 (88)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 776543
No 355
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.47 E-value=2.4e-13 Score=101.79 Aligned_cols=83 Identities=11% Similarity=0.180 Sum_probs=73.1
Q ss_pred CCCCceEEecCCCC-----CCCHHHHHHHHhhhCCCcceeEEEEcCCC-CCCceeEEEEeCCHHHHHHHHHhhCCccccC
Q 015091 170 DTPDHTIFVGDLAA-----DVTDYMLQETFRARYPSTKGAKVVIDRLT-GRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243 (413)
Q Consensus 170 ~~~~~~l~v~~lp~-----~~~~~~l~~~f~~~~g~v~~~~~~~~~~~-g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 243 (413)
..++++|+|.||.. +.++++|++.| +.||.|.++.++.++.+ ++++||+||+|.+.++|.+|++.|||..+.|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f-~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEEC-EKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHG-GGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHH-HhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 34678999999963 23789999999 89999999999988654 6889999999999999999999999999999
Q ss_pred cceEeccCCC
Q 015091 244 RPMRIGPATN 253 (413)
Q Consensus 244 ~~i~v~~~~~ 253 (413)
+.|.|.++..
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999865
No 356
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.47 E-value=2.6e-13 Score=101.70 Aligned_cols=76 Identities=18% Similarity=0.277 Sum_probs=66.1
Q ss_pred CCCceEEEecC--CCCCC--------HHHHHHHHhcCCCeEEEEeeCC--------CcEEEEEecCHHHHHHHHHHhcCc
Q 015091 280 PNNTTVFVGNL--DSIVT--------DEHLRELFSQYGQLVHVKIPAG--------KRCGFVQFADRSCAEEALRMLNGT 341 (413)
Q Consensus 280 ~~~~~l~v~nl--p~~~~--------~~~l~~~f~~~G~i~~v~~~~~--------~~~afV~f~~~~~a~~a~~~l~~~ 341 (413)
.++++|.|.|+ +..+. ++||++.|++||.|.+|.|.++ +|++||+|.+.++|.+|+..|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35788999998 33332 3789999999999999999753 689999999999999999999999
Q ss_pred eeCCeeEEEEeccC
Q 015091 342 QLGGQNIRLSWGRS 355 (413)
Q Consensus 342 ~~~g~~l~v~~~~~ 355 (413)
.|+||.|+|.|...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999754
No 357
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1e-12 Score=97.07 Aligned_cols=65 Identities=20% Similarity=0.335 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHhcCCCeEEEEee-CCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCCCC
Q 015091 292 SIVTDEHLRELFSQYGQLVHVKIP-AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 358 (413)
Q Consensus 292 ~~~~~~~l~~~f~~~G~i~~v~~~-~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 358 (413)
..+++++|+++|++||.|.+|.|. +.+|||||+|.+.++|.+|+..++ .+.++.|+|+|++.+..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCCC
Confidence 468999999999999999999997 568999999999999999999744 47899999999987654
No 358
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=105.88 Aligned_cols=79 Identities=18% Similarity=0.237 Sum_probs=67.2
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCC---CCCceeEEEEeCCHHHHHHHHHhhCCccccCcce
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT---GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~---g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 246 (413)
....++|||+||+.++++++|+++| +.||.|. +.++.+..+ |+++|||||+|.+.++|++|++.|+ .++|+.+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F-~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~ 80 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASF-RRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLY 80 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHT-TTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHH-HhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEE
Confidence 3456899999999999999999999 8999999 777777766 7999999999999999999999884 3667766
Q ss_pred EeccCC
Q 015091 247 RIGPAT 252 (413)
Q Consensus 247 ~v~~~~ 252 (413)
.+..+.
T Consensus 81 ~~~~~~ 86 (114)
T 2dnl_A 81 LCVSSP 86 (114)
T ss_dssp EEECCS
T ss_pred EeccCC
Confidence 665443
No 359
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.46 E-value=3.3e-13 Score=104.20 Aligned_cols=79 Identities=16% Similarity=0.291 Sum_probs=71.3
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEe
Q 015091 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 248 (413)
.....++|||+|| ++++++|+++| +.||.|.++.+. .++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F-~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAF-SPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHH-STTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHH-HccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456789999996 79999999999 899999999885 46899999999999999999999999999999999
Q ss_pred ccCCCCCc
Q 015091 249 GPATNKKT 256 (413)
Q Consensus 249 ~~~~~~~~ 256 (413)
.++.....
T Consensus 106 ~~a~~~~~ 113 (121)
T 2bz2_A 106 NIARKQPM 113 (121)
T ss_dssp EECCSSCC
T ss_pred EEeCCCCC
Confidence 99987643
No 360
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.45 E-value=2.6e-13 Score=113.95 Aligned_cols=119 Identities=11% Similarity=0.046 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHh--CCCcCCCCCcceeeeeccCCCCCC-----CCCCCCceEEecCCCCCCCHHHHHHHHhhhCCCccee
Q 015091 132 SRAGAERVLQTF--NGTPMPNGEQNFRLNWASFGAGEK-----RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGA 204 (413)
Q Consensus 132 ~~~~A~~a~~~l--~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~ 204 (413)
+.+.+..|+... ....+...+..++.. ....... ......++|||+|||.++++++|+++| +.||.|..+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~--~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F-~~~G~v~~v 139 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRS--PSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL-EDKGQVLNI 139 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEEC--TTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHH-TTSCCEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEec--ccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHH-hcCCCEEEE
Confidence 667777887765 333344444444433 1111110 012245799999999999999999999 899999999
Q ss_pred EEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCCCC
Q 015091 205 KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255 (413)
Q Consensus 205 ~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 255 (413)
++.++. ++.++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++....
T Consensus 140 ~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 140 QMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDYF 188 (193)
T ss_dssp EEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC-
T ss_pred EEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHHH
Confidence 999886 5889999999999999999999655 468999999999876643
No 361
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.41 E-value=3.8e-13 Score=115.30 Aligned_cols=81 Identities=17% Similarity=0.357 Sum_probs=68.5
Q ss_pred CCCCcceeeecCCCCCC---------CHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCc
Q 015091 77 QPGEIRTLWIGDLQYWM---------DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTP 147 (413)
Q Consensus 77 ~~~~~~~l~v~~lp~~~---------~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~ 147 (413)
.....++|||+||+..+ ++++|+++|+.||.|.+|+|+.+ +|||||+|.+.++|+.|++.|++..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 35678999999999998 79999999999999999999865 4999999999999999999999999
Q ss_pred CCC----------CCcceeeeeccCC
Q 015091 148 MPN----------GEQNFRLNWASFG 163 (413)
Q Consensus 148 ~~~----------~~~~~~~~~~~~~ 163 (413)
|.. .+..+.+.|+...
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred EeccccccccccCCCCEEEEEEccCC
Confidence 821 4556677777644
No 362
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.41 E-value=6.3e-13 Score=120.22 Aligned_cols=76 Identities=21% Similarity=0.355 Sum_probs=67.9
Q ss_pred CCCCceEEEec--CCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCcee---CCe--eEEEE
Q 015091 279 DPNNTTVFVGN--LDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQL---GGQ--NIRLS 351 (413)
Q Consensus 279 ~~~~~~l~v~n--lp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~---~g~--~l~v~ 351 (413)
...+++|||+| |+..+++++|+++|++||.|.+|.+..+|+||||+|++.++|++|++.|||.++ .|+ .|.|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 45678999999 578999999999999999999999999999999999999999999999999997 244 57777
Q ss_pred ecc
Q 015091 352 WGR 354 (413)
Q Consensus 352 ~~~ 354 (413)
|+.
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 764
No 363
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.41 E-value=8.6e-13 Score=100.74 Aligned_cols=75 Identities=20% Similarity=0.250 Sum_probs=65.5
Q ss_pred CCceEEEecCCC--CC---CHHHHHHHHhcCCCeEEEEeeCC----------CcEEEEEecCHHHHHHHHHHhcCceeCC
Q 015091 281 NNTTVFVGNLDS--IV---TDEHLRELFSQYGQLVHVKIPAG----------KRCGFVQFADRSCAEEALRMLNGTQLGG 345 (413)
Q Consensus 281 ~~~~l~v~nlp~--~~---~~~~l~~~f~~~G~i~~v~~~~~----------~~~afV~f~~~~~a~~a~~~l~~~~~~g 345 (413)
.+++|+|.|+-. ++ .++||++.|++||.|.+|.|.++ +|++||+|.+.++|.+|+..|||+.|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999842 22 46899999999999999999653 3799999999999999999999999999
Q ss_pred eeEEEEeccC
Q 015091 346 QNIRLSWGRS 355 (413)
Q Consensus 346 ~~l~v~~~~~ 355 (413)
|.|+|.|...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999754
No 364
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.38 E-value=2.4e-12 Score=97.54 Aligned_cols=75 Identities=15% Similarity=0.214 Sum_probs=65.2
Q ss_pred CCceEEEecCCCCC----------CHHHHHHHHhcCCCeEEEEeeCC--CcEEEEEecCHHHHHHHHHHhcCceeCCeeE
Q 015091 281 NNTTVFVGNLDSIV----------TDEHLRELFSQYGQLVHVKIPAG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNI 348 (413)
Q Consensus 281 ~~~~l~v~nlp~~~----------~~~~l~~~f~~~G~i~~v~~~~~--~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l 348 (413)
.+++|.|.|+=... .++||++.|++||.|.+|.|.++ +|++||+|.+.++|.+|+..|||+.|+||.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 56789999984321 23688999999999999999776 7999999999999999999999999999999
Q ss_pred EEEeccC
Q 015091 349 RLSWGRS 355 (413)
Q Consensus 349 ~v~~~~~ 355 (413)
+|+|+..
T Consensus 86 ~v~~~~~ 92 (114)
T 3s6e_A 86 TAAYVPL 92 (114)
T ss_dssp EEEEECH
T ss_pred EEEEEcH
Confidence 9999754
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.37 E-value=2.9e-13 Score=101.34 Aligned_cols=67 Identities=25% Similarity=0.382 Sum_probs=57.9
Q ss_pred EecCCCCCCHHHHHHHH------------hcCCCeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 015091 287 VGNLDSIVTDEHLRELF------------SQYGQLVHVKIPAG-----KRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 349 (413)
Q Consensus 287 v~nlp~~~~~~~l~~~f------------~~~G~i~~v~~~~~-----~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 349 (413)
+.||+..+++++|+++| ++||.|.+|.|.++ +|+|||+|.+.++|.+|+..|||+.++||.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45666666777666555 99999999999765 79999999999999999999999999999999
Q ss_pred EEec
Q 015091 350 LSWG 353 (413)
Q Consensus 350 v~~~ 353 (413)
|+|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9985
No 366
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.36 E-value=1.1e-12 Score=98.25 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=65.3
Q ss_pred CCcceeeecCC--CCCCC--------HHHHHHHhhccCceEEEEEEecCCC--CCcccEEEEEEcCHHHHHHHHHHhCCC
Q 015091 79 GEIRTLWIGDL--QYWMD--------ETYLNTCFAHTGEVVAVKVIRNKQT--GQIEGYGFIEFISRAGAERVLQTFNGT 146 (413)
Q Consensus 79 ~~~~~l~v~~l--p~~~~--------~~~l~~~f~~~G~v~~~~~~~~~~~--g~~~g~afV~f~~~~~A~~a~~~l~g~ 146 (413)
.+++.|.|.|+ +.++. +++|++.|++||.|.+|+|.+++.+ ++++|+|||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35788999998 33443 3689999999999999999988754 468899999999999999999999999
Q ss_pred cCCCCCcceee
Q 015091 147 PMPNGEQNFRL 157 (413)
Q Consensus 147 ~~~~~~~~~~~ 157 (413)
.+.++.+.+..
T Consensus 83 ~f~GR~i~v~~ 93 (105)
T 3v4m_A 83 KFANRVVVTKY 93 (105)
T ss_dssp EETTEECEEEE
T ss_pred EeCCCEEEEEE
Confidence 99775554443
No 367
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=7.2e-12 Score=95.46 Aligned_cols=83 Identities=12% Similarity=0.219 Sum_probs=70.9
Q ss_pred CCCCCceEEecCCCCCCC-----------HHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhC
Q 015091 169 DDTPDHTIFVGDLAADVT-----------DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237 (413)
Q Consensus 169 ~~~~~~~l~v~~lp~~~~-----------~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~ 237 (413)
...++++|+|.||....+ +++|+++| +.||.|..+.+ .+. .++|||||+|.+.++|.+|++.||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f-~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVEC-SKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHG-GGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHH-HccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 456788999999954432 58999999 89999999955 443 379999999999999999999999
Q ss_pred CccccCcceEeccCCCCCc
Q 015091 238 GVFCSTRPMRIGPATNKKT 256 (413)
Q Consensus 238 ~~~~~g~~i~v~~~~~~~~ 256 (413)
+..+.|+.|+|.++..+..
T Consensus 86 g~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp TCEETTEECEEEECCSCCC
T ss_pred CCEECCcEEEEEEeCCCCC
Confidence 9999999999999877544
No 368
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=6.7e-12 Score=94.95 Aligned_cols=77 Identities=17% Similarity=0.156 Sum_probs=69.6
Q ss_pred CCCCCCceEEEecCCCC-CCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecC-HHHHHHHHHHhc--CceeCCeeEEEEe
Q 015091 277 DDDPNNTTVFVGNLDSI-VTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD-RSCAEEALRMLN--GTQLGGQNIRLSW 352 (413)
Q Consensus 277 ~~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~-~~~a~~a~~~l~--~~~~~g~~l~v~~ 352 (413)
.....++.|+|+||+.. +++++|+++|+.||.|.+|++.++..+|||+|.+ .++|.+|+..|+ +..|.|..++++.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 34567899999999999 9999999999999999999999999999999999 899999999994 6779998888876
Q ss_pred c
Q 015091 353 G 353 (413)
Q Consensus 353 ~ 353 (413)
.
T Consensus 93 L 93 (121)
T 1owx_A 93 L 93 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 369
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.30 E-value=9e-13 Score=98.64 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=58.6
Q ss_pred ecCCCCCCCHHHHHHHh------------hccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCc
Q 015091 86 IGDLQYWMDETYLNTCF------------AHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (413)
Q Consensus 86 v~~lp~~~~~~~l~~~f------------~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~ 153 (413)
+.+|++.+++++|+++| ++||.|.+|+|++++ +++++|||||+|.+.++|.+|++.|||+.+.++.+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45667777777777666 999999999999886 48899999999999999999999999999977554
Q ss_pred cee
Q 015091 154 NFR 156 (413)
Q Consensus 154 ~~~ 156 (413)
.+.
T Consensus 99 ~v~ 101 (104)
T 1jmt_A 99 HAE 101 (104)
T ss_dssp CEE
T ss_pred EEE
Confidence 443
No 370
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.30 E-value=5.4e-12 Score=96.30 Aligned_cols=81 Identities=14% Similarity=0.192 Sum_probs=70.3
Q ss_pred CCceEEecCCCC-----CCCHHHHHHHHhhhCCCcceeEEEEcCC----CCCCceeEEEEeCCHHHHHHHHHhhCCcccc
Q 015091 172 PDHTIFVGDLAA-----DVTDYMLQETFRARYPSTKGAKVVIDRL----TGRTKGYGFVRFGDESEQLRAMTEMNGVFCS 242 (413)
Q Consensus 172 ~~~~l~v~~lp~-----~~~~~~l~~~f~~~~g~v~~~~~~~~~~----~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 242 (413)
++++|++.|+-. +-.+++|++.| ++||.|.++.|+.+.. +++++|++||+|.+.++|.+|++.|||..|+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef-~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEEC-GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHH-TTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHH-hccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 567899999832 22468999999 8999999999998864 4567899999999999999999999999999
Q ss_pred CcceEeccCCC
Q 015091 243 TRPMRIGPATN 253 (413)
Q Consensus 243 g~~i~v~~~~~ 253 (413)
|+.|+|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999998765
No 371
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=2.9e-11 Score=85.29 Aligned_cols=73 Identities=26% Similarity=0.412 Sum_probs=61.8
Q ss_pred CCCceEEEecCCC----CCCH----HHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEE
Q 015091 280 PNNTTVFVGNLDS----IVTD----EHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 351 (413)
Q Consensus 280 ~~~~~l~v~nlp~----~~~~----~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 351 (413)
++..+|+|.-.+. ++.+ .+|.+.|++||.|..+++..++ +||+|.+.++|.+|+. |||..++||.|+|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 3456777776652 3333 6789999999999999999886 8999999999999999 99999999999999
Q ss_pred eccC
Q 015091 352 WGRS 355 (413)
Q Consensus 352 ~~~~ 355 (413)
++++
T Consensus 82 lkt~ 85 (91)
T 2dnr_A 82 LKSP 85 (91)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 9875
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.26 E-value=7.5e-12 Score=113.22 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=64.7
Q ss_pred CCCCcceeeecC--CCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCC---CC
Q 015091 77 QPGEIRTLWIGD--LQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP---NG 151 (413)
Q Consensus 77 ~~~~~~~l~v~~--lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~---~~ 151 (413)
...++++|||+| |+..+|+++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++.|||+.+. ++
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 356788999999 578999999999999999999987753 3599999999999999999999999873 23
Q ss_pred Ccceeeeec
Q 015091 152 EQNFRLNWA 160 (413)
Q Consensus 152 ~~~~~~~~~ 160 (413)
++.+.+++.
T Consensus 88 ~~~ly~~~~ 96 (345)
T 3tht_A 88 KITLYLNFV 96 (345)
T ss_dssp EEECEEEEC
T ss_pred ceEEEEEEe
Confidence 334555554
No 373
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1.3e-10 Score=85.73 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=58.0
Q ss_pred cceeeecCCC-------CCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCc
Q 015091 81 IRTLWIGDLQ-------YWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (413)
Q Consensus 81 ~~~l~v~~lp-------~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~ 153 (413)
..+|.|.-.. .++++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|.+|++.+++ +. ..
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~--g~ 80 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LV--DN 80 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CS--SS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CC--CC
Confidence 4556555443 458999999999999999999998 36779999999999999999987554 33 45
Q ss_pred ceeeeeccCC
Q 015091 154 NFRLNWASFG 163 (413)
Q Consensus 154 ~~~~~~~~~~ 163 (413)
.+++.|+...
T Consensus 81 ~l~V~~a~~~ 90 (100)
T 2d9o_A 81 PLKISWLEGQ 90 (100)
T ss_dssp BCEEECSSCC
T ss_pred eEEEEEccCC
Confidence 5666776544
No 374
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1.5e-10 Score=82.05 Aligned_cols=75 Identities=27% Similarity=0.402 Sum_probs=63.3
Q ss_pred CCCCCCceEEEecCCCC-----CCH----HHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCee
Q 015091 277 DDDPNNTTVFVGNLDSI-----VTD----EHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQN 347 (413)
Q Consensus 277 ~~~~~~~~l~v~nlp~~-----~~~----~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~ 347 (413)
...++.-+|+|.-++.. +.+ .+|.+.|+.||.|..+++..++ +||+|.+.++|.+|+. |+|..++||.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 34456678988887632 222 5688999999999999999886 9999999999999999 9999999999
Q ss_pred EEEEecc
Q 015091 348 IRLSWGR 354 (413)
Q Consensus 348 l~v~~~~ 354 (413)
|+|++..
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9999854
No 375
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.08 E-value=2.8e-10 Score=86.15 Aligned_cols=78 Identities=8% Similarity=0.071 Sum_probs=64.7
Q ss_pred CCCceEEecCCCCCC----------CHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCcc
Q 015091 171 TPDHTIFVGDLAADV----------TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (413)
Q Consensus 171 ~~~~~l~v~~lp~~~----------~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~ 240 (413)
.+++.|.+.|+-... .+++|++.| ++||.|.++.+.++. .+|++||+|.+.++|.+|++.|||..
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f-~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEEC-NKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHH-TTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHH-hccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 456778888873322 235889999 899999998885442 58999999999999999999999999
Q ss_pred ccCcceEeccCCC
Q 015091 241 CSTRPMRIGPATN 253 (413)
Q Consensus 241 ~~g~~i~v~~~~~ 253 (413)
++|+.|.|.++..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999999864
No 376
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.98 E-value=2.7e-09 Score=76.84 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=68.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcC-----CCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEe
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQY-----GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~-----G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 352 (413)
..++|-|-|||+.++++.|+.+.+.+ |.|++|.+..+-+-|+|+|.|...|.+|...|+|.+|+||+|+|.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 35789999999999999999999999 9999999999999999999999999999999999999999999853
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=2.1e-09 Score=81.29 Aligned_cols=67 Identities=18% Similarity=0.080 Sum_probs=58.5
Q ss_pred CCCcceeeecCCCCC-CCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcC-HHHHHHHHHHhC--CCcCCC
Q 015091 78 PGEIRTLWIGDLQYW-MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFIS-RAGAERVLQTFN--GTPMPN 150 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~-~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~-~~~A~~a~~~l~--g~~~~~ 150 (413)
-...+.|+|+||+.+ +++++|+++|+.||.|..|.+.++.. .|||+|.+ .++|..|++.+| +..|.+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 346789999999999 99999999999999999999988873 69999999 899999999985 444544
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=5.5e-09 Score=73.68 Aligned_cols=70 Identities=23% Similarity=0.305 Sum_probs=55.8
Q ss_pred CcceeeecCCCC----CCCH----HHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCC
Q 015091 80 EIRTLWIGDLQY----WMDE----TYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG 151 (413)
Q Consensus 80 ~~~~l~v~~lp~----~~~~----~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~ 151 (413)
+..||+|.-++. ++-. .+|.+.|+.||.|..++++.++ +||+|.+.++|.+|++ |||..+.++
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 355677766652 2333 6688999999999999999864 8999999999999998 999999776
Q ss_pred Ccceeee
Q 015091 152 EQNFRLN 158 (413)
Q Consensus 152 ~~~~~~~ 158 (413)
.++|++.
T Consensus 77 ~LkV~lk 83 (91)
T 2dnr_A 77 TITIALK 83 (91)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 6666553
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.77 E-value=1.2e-08 Score=87.89 Aligned_cols=62 Identities=21% Similarity=0.212 Sum_probs=56.2
Q ss_pred CCHHHHHHHHhcCCCeEEEEee----------CCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccC
Q 015091 294 VTDEHLRELFSQYGQLVHVKIP----------AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355 (413)
Q Consensus 294 ~~~~~l~~~f~~~G~i~~v~~~----------~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 355 (413)
-.+++|++.|++||.|.++.+. +.+|++||+|.+.++|.+|+..|+|+.++||.|.+.|...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3568999999999999999996 3468999999999999999999999999999999999653
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.70 E-value=8e-08 Score=82.59 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHhhhCCCcceeEEEEcCC----CCCCceeEEEEeCCHHHHHHHHHhhCCccccCcceEeccCCC
Q 015091 184 DVTDYMLQETFRARYPSTKGAKVVIDRL----TGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (413)
Q Consensus 184 ~~~~~~l~~~f~~~~g~v~~~~~~~~~~----~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 253 (413)
+-.+++|++.| +.||.|.++.+..+.. +++++|++||+|.+.++|.+|++.|+|..+.||.|.+.+...
T Consensus 140 ~e~~~dl~~e~-~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEEC-GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHH-TTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHH-HccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 34668899999 8999999999986544 448899999999999999999999999999999999998764
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=5.4e-08 Score=68.92 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=60.6
Q ss_pred CCCCceEEecCCCCC-----CCH----HHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCcc
Q 015091 170 DTPDHTIFVGDLAAD-----VTD----YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~-----~~~----~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~ 240 (413)
..+..||+|.-++.+ +-. .+|.+.| +.||+|..++++.++ +||+|.+.++|.+|++ |++..
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F-~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTL-GSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHH-HHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHH-HHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 456678999887643 222 5688999 889999999998664 9999999999999997 99999
Q ss_pred ccCcceEeccCC
Q 015091 241 CSTRPMRIGPAT 252 (413)
Q Consensus 241 ~~g~~i~v~~~~ 252 (413)
+.|+.|+|+...
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999998754
No 382
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.30 E-value=2.6e-06 Score=61.44 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=66.3
Q ss_pred CceEEEecCCCCC-C----HHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccC
Q 015091 282 NTTVFVGNLDSIV-T----DEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355 (413)
Q Consensus 282 ~~~l~v~nlp~~~-~----~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 355 (413)
.++|+|.||+..+ . .+.++++|..|+.+......++-.-..|.|.+.++|.+|-..||+..+.|+.|+|-|+..
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 4789999998765 2 257789999999999999999877889999999999999999999999999999999874
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.27 E-value=1.7e-06 Score=62.40 Aligned_cols=67 Identities=10% Similarity=0.117 Sum_probs=61.8
Q ss_pred CCcceeeecCCCCCCCHHHHHHHhhcc-----CceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCC
Q 015091 79 GEIRTLWIGDLQYWMDETYLNTCFAHT-----GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG 151 (413)
Q Consensus 79 ~~~~~l~v~~lp~~~~~~~l~~~f~~~-----G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~ 151 (413)
+..++|-|-|||..+++..|+.+.+.+ |.++.+.+..|. +=|+|+|.+...|.+|.=.|+|..|.++
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr 90 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGK 90 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCe
Confidence 457899999999999999999999999 999999999987 6899999999999999989999999643
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=3.1e-05 Score=55.52 Aligned_cols=72 Identities=24% Similarity=0.278 Sum_probs=62.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHhcC-----CCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEecc
Q 015091 280 PNNTTVFVGNLDSIVTDEHLRELFSQY-----GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~~~f~~~-----G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 354 (413)
...++|.|.|||..++++.|.-+|+.- |.|.++.... +.|+|+|.+.+.|+++++. ..+.|.+..|.|.-.-
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCC
Confidence 356889999999999999999999872 6899998876 7999999999999999984 4788999999997543
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=9.7e-05 Score=52.97 Aligned_cols=90 Identities=13% Similarity=0.130 Sum_probs=69.4
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHhh----hCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccCcce
Q 015091 171 TPDHTIFVGDLAADVTDYMLQETFRA----RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (413)
Q Consensus 171 ~~~~~l~v~~lp~~~~~~~l~~~f~~----~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 246 (413)
...++|.|.|||.+++++.|.-+|++ ..|+|+.+.... +-|+|+|.+.+.|++.++ ...+.+.+..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEE
Confidence 34568999999999999999999965 246677666632 568999999999999994 44788899999
Q ss_pred EeccCCCCCccCCCccCCCCcccCcccccCCCCCCCceEEEecCCCCCC
Q 015091 247 RIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 295 (413)
Q Consensus 247 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~ 295 (413)
.|....... ..+|++.+|+..++
T Consensus 77 sV~P~~~~~--------------------------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAPPRA--------------------------PARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECCCCC--------------------------CCCCCCCSCCCCCC
T ss_pred EEEcCCCCC--------------------------cceEeeecCCCCCC
Confidence 987654432 35688888887664
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.90 E-value=5.3e-05 Score=56.33 Aligned_cols=73 Identities=18% Similarity=0.189 Sum_probs=62.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCC-eeEEEEecc
Q 015091 280 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGG-QNIRLSWGR 354 (413)
Q Consensus 280 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g-~~l~v~~~~ 354 (413)
...+-|.|.+.+... ...|.++|++||.|.+...........|+|.+..+|++||.+ ||..|++ ..|-|....
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECC
Confidence 345778899998885 567889999999999999877788999999999999999995 9999974 677777654
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.72 E-value=0.00011 Score=52.20 Aligned_cols=69 Identities=13% Similarity=0.095 Sum_probs=58.1
Q ss_pred ceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCc--ccEEEEEEcCHHHHHHHHHHhCCCcCCC
Q 015091 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQI--EGYGFIEFISRAGAERVLQTFNGTPMPN 150 (413)
Q Consensus 82 ~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~--~g~afV~f~~~~~A~~a~~~l~g~~~~~ 150 (413)
..|.|++||+.+|++++.+.++....+.....+..+.+.+. -.-|||.|.+.+++....+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 47899999999999999999999988887877776544332 2459999999999999999999988743
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.51 E-value=0.00067 Score=48.12 Aligned_cols=72 Identities=11% Similarity=0.133 Sum_probs=58.3
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC--------CcEEEEEecCHHHHHHHHHHhcCceeCCe-----eEE
Q 015091 283 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG--------KRCGFVQFADRSCAEEALRMLNGTQLGGQ-----NIR 349 (413)
Q Consensus 283 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~--------~~~afV~f~~~~~a~~a~~~l~~~~~~g~-----~l~ 349 (413)
++|.|++||..+|++++.+.++....+.......+ -..|||.|.+.+++......++|+.|-+. ...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 47899999999999999999999888777666433 24799999999999999999999986322 345
Q ss_pred EEecc
Q 015091 350 LSWGR 354 (413)
Q Consensus 350 v~~~~ 354 (413)
|++|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66653
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.32 E-value=0.0016 Score=46.06 Aligned_cols=56 Identities=16% Similarity=0.286 Sum_probs=44.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhc
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN 339 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~ 339 (413)
..+.++| ++|..+...||.++|+.||.|. |.... ...|||.|.+.+.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~Wid-DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWID-DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEE-TTEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEc-CCeEEEEecCHHHHHHHHHhcc
Confidence 4456666 9999999999999999998542 22222 4599999999999999999764
No 390
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.30 E-value=0.0002 Score=53.98 Aligned_cols=70 Identities=14% Similarity=0.279 Sum_probs=55.5
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcCCCeEE-EEeeC-------------------CCcEEEEEecCHHHHHHHHHHhcCce
Q 015091 283 TTVFVGNLDSIVTDEHLRELFSQYGQLVH-VKIPA-------------------GKRCGFVQFADRSCAEEALRMLNGTQ 342 (413)
Q Consensus 283 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~-v~~~~-------------------~~~~afV~f~~~~~a~~a~~~l~~~~ 342 (413)
.-|.|-+.|...+. .|.++|++||.|.+ +...+ +.++..|+|++..+|.+||.. ||..
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeE
Confidence 55788899777664 57789999999866 32221 356789999999999999995 9999
Q ss_pred eCCeeEEEEecc
Q 015091 343 LGGQNIRLSWGR 354 (413)
Q Consensus 343 ~~g~~l~v~~~~ 354 (413)
|+|..|-|...+
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988887754
No 391
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.16 E-value=0.00087 Score=48.33 Aligned_cols=73 Identities=14% Similarity=0.069 Sum_probs=58.3
Q ss_pred cceeeecCCCCCC-CH----HHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCcCCCCCcce
Q 015091 81 IRTLWIGDLQYWM-DE----TYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (413)
Q Consensus 81 ~~~l~v~~lp~~~-~~----~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g~~~~~~~~~~ 155 (413)
..+|+|.||+.++ +. +.++++|..|+.+......++= .=..|.|.++++|.+|...|++..+.|+. +
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~--~ 76 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKE--M 76 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEE--C
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCce--e
Confidence 4689999998876 32 5678999999999988887653 34789999999999999999999997764 4
Q ss_pred eeeecc
Q 015091 156 RLNWAS 161 (413)
Q Consensus 156 ~~~~~~ 161 (413)
++-++.
T Consensus 77 r~YFgq 82 (104)
T 1wey_A 77 KLYFAQ 82 (104)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 444443
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.15 E-value=0.0015 Score=46.26 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=44.9
Q ss_pred cceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 015091 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN 144 (413)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~ 144 (413)
...++| +.|.++...||.++|+.||. ..|+-+.| ..|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 445566 99999999999999999983 34555555 389999999999999998764
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.98 E-value=0.00066 Score=48.40 Aligned_cols=71 Identities=10% Similarity=0.010 Sum_probs=52.7
Q ss_pred CcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCc--ccEEEEEEcCHHHHHHHHHHhCCCcCCC
Q 015091 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQI--EGYGFIEFISRAGAERVLQTFNGTPMPN 150 (413)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~--~g~afV~f~~~~~A~~a~~~l~g~~~~~ 150 (413)
.+-.|.|+.||+.+|++++.+.++.+=.+.....+..+.+.+. -.-|||.|.+.++.....+.++|..+.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 4567999999999999999888877655443333333322221 2448999999999999999999988744
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.91 E-value=0.002 Score=45.78 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=44.0
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhc
Q 015091 283 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN 339 (413)
Q Consensus 283 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~ 339 (413)
+.++| ++|..+...||.++|+.||.| .|.... ...|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~Wid-DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID-DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEE-TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEc-CCeEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999843 333333 4599999999999999999764
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.81 E-value=0.0021 Score=45.66 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=44.3
Q ss_pred eeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 015091 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN 144 (413)
Q Consensus 83 ~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~ 144 (413)
.++| +.|.++...||.++|+.|| -..|+-+.| ..|||.|.+++.|..|+..++
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 3455 9999999999999999998 445555555 389999999999999998765
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.74 E-value=0.0037 Score=44.55 Aligned_cols=74 Identities=12% Similarity=0.083 Sum_probs=55.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCC--------CcEEEEEecCHHHHHHHHHHhcCceeCC-----ee
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG--------KRCGFVQFADRSCAEEALRMLNGTQLGG-----QN 347 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~--------~~~afV~f~~~~~a~~a~~~l~~~~~~g-----~~ 347 (413)
.+.+|.|+.||..+|++++.+.++..-.+.......+ -..|||.|.+.++.......++|..|-+ ..
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 4567999999999999999888877655443333222 2468999999999999999999998633 24
Q ss_pred EEEEecc
Q 015091 348 IRLSWGR 354 (413)
Q Consensus 348 l~v~~~~ 354 (413)
..|++|-
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 5566653
No 397
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.55 E-value=0.0091 Score=44.33 Aligned_cols=75 Identities=13% Similarity=0.201 Sum_probs=57.6
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHhhhCCCcceeEEEEcCCCCCCceeEEEEeCCHHHHHHHHHhhCCccccC-cceEe
Q 015091 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST-RPMRI 248 (413)
Q Consensus 170 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g-~~i~v 248 (413)
....+.|.|-+.+... .+.|.+.| ++||+|.+... . ....+-.|.|.+..+|++|| ..|+..+++ -.|-|
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F-~~~G~Iv~~~~--~----~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQF-AQYGNILKHVM--S----NTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGV 91 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHH-HTTSCEEEEEE--C----SSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHH-HhhCcEEEecc--C----CCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEE
Confidence 4456788999999885 56778889 88999987775 1 23568899999999999999 679988875 55556
Q ss_pred ccCCC
Q 015091 249 GPATN 253 (413)
Q Consensus 249 ~~~~~ 253 (413)
.....
T Consensus 92 ~p~~d 96 (119)
T 1wwh_A 92 KPCID 96 (119)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 66443
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.55 E-value=0.0013 Score=61.63 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=42.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCc-EEEEEecCHHHHHHHHHH
Q 015091 283 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR-CGFVQFADRSCAEEALRM 337 (413)
Q Consensus 283 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~-~afV~f~~~~~a~~a~~~ 337 (413)
++|+|. .+..+++.+|.++|++||.|.++.+.+++| +|.|||.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 789997 689999999999999999999999988765 999999999999877653
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.17 E-value=0.0024 Score=59.77 Aligned_cols=56 Identities=14% Similarity=0.142 Sum_probs=43.5
Q ss_pred CcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHH
Q 015091 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141 (413)
Q Consensus 80 ~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~ 141 (413)
..|+|+|. .+..+++.+|.++|++||.|.++.+..++. -||.|+|.+.+++.+++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHh
Confidence 35789998 799999999999999999999998887652 699999999999998864
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=91.20 E-value=0.29 Score=36.86 Aligned_cols=77 Identities=12% Similarity=0.139 Sum_probs=52.6
Q ss_pred ceEEecCCCCCCCHHHHHHHHhhhCCCcceeE-EEE--------cCCCC-----CCceeEEEEeCCHHHHHHHHHhhCCc
Q 015091 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAK-VVI--------DRLTG-----RTKGYGFVRFGDESEQLRAMTEMNGV 239 (413)
Q Consensus 174 ~~l~v~~lp~~~~~~~l~~~f~~~~g~v~~~~-~~~--------~~~~g-----~~~g~afv~f~~~~~a~~a~~~l~~~ 239 (413)
..|.|-+.|.+.+. .+.+.| ++||.|.+-. ... ..... .......|.|++..+|.+|+ ..||.
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~F-s~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYF-QEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHH-GGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred eEEEEEecCHHHHH-HHHHHH-HhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 45677788766554 567788 8899987621 110 00000 12456789999999999999 78999
Q ss_pred cccCcceEeccCCC
Q 015091 240 FCSTRPMRIGPATN 253 (413)
Q Consensus 240 ~~~g~~i~v~~~~~ 253 (413)
.|.|..|-|.....
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99998777776643
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.28 E-value=1.5 Score=41.81 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=44.6
Q ss_pred cceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 015091 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNG 145 (413)
Q Consensus 81 ~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~g 145 (413)
...++|+ ++..+...+|.++|+.||. .+|+-+.+ ..|||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 3455665 8889999999999999994 45554443 3799999999999999998764
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.02 E-value=2.6 Score=40.17 Aligned_cols=55 Identities=16% Similarity=0.298 Sum_probs=44.1
Q ss_pred CceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhc
Q 015091 282 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN 339 (413)
Q Consensus 282 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~ 339 (413)
...++|+ ++..+...+|.+.|+.||.| +|... +...|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi-ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI-DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC-SSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE-cCCeEEEEECCHHHHHHHHHHHH
Confidence 4555555 89999999999999999965 34333 45689999999999999999875
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=80.54 E-value=11 Score=25.69 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=45.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHh
Q 015091 281 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRML 338 (413)
Q Consensus 281 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l 338 (413)
.++.|.|-|+|..+-..++.-.....|---.++... |.|.|+|.+.++..-|+.+|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--SCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--CeeEEEecCChHHHHHHHHH
Confidence 457889999999998888877777777666666553 58999999999999999887
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=67.65 E-value=26 Score=23.89 Aligned_cols=58 Identities=14% Similarity=0.071 Sum_probs=46.5
Q ss_pred CCCcceeeecCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 015091 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143 (413)
Q Consensus 78 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l 143 (413)
-...+-|.|-|+|..+-..++.-.....|.-.-|..+. |.|.+.|.+.++-..|+..|
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 34678899999999999988888888877655554432 67999999999999999875
No 405
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=60.81 E-value=21 Score=23.04 Aligned_cols=54 Identities=7% Similarity=-0.040 Sum_probs=43.2
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHH
Q 015091 283 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRM 337 (413)
Q Consensus 283 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~ 337 (413)
.++.|.++.=.--...|++.+.. ..|..+.+....+.+.|+|.+.++...+++.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHH
Confidence 56788888776677889999998 8899999988888899999855666666665
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=60.19 E-value=12 Score=24.88 Aligned_cols=59 Identities=8% Similarity=0.250 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHhcCC-----CeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEecc
Q 015091 293 IVTDEHLRELFSQYG-----QLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354 (413)
Q Consensus 293 ~~~~~~l~~~f~~~G-----~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 354 (413)
.+..-+|..++..-+ .|-.|++..+ +.||+-.. +.|..++..|++..+.|+.+.|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 456667777776544 4567777554 88888754 44778888899999999999988764
No 407
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=46.22 E-value=31 Score=24.87 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHhhhCCCcceeEEEEc--CCCC--CCceeEEEEeCCHHHHHHH
Q 015091 183 ADVTDYMLQETFRARYPSTKGAKVVID--RLTG--RTKGYGFVRFGDESEQLRA 232 (413)
Q Consensus 183 ~~~~~~~l~~~f~~~~g~v~~~~~~~~--~~~g--~~~g~afv~f~~~~~a~~a 232 (413)
.+.+..+|++.+++.++.-.++.++.. ..-| ++.|||.| |+|.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 467888999888777776555444432 2233 45555543 6666666553
No 408
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=45.91 E-value=52 Score=20.50 Aligned_cols=54 Identities=6% Similarity=0.119 Sum_probs=40.1
Q ss_pred eEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCH---HHHHHHHHH
Q 015091 284 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADR---SCAEEALRM 337 (413)
Q Consensus 284 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~---~~a~~a~~~ 337 (413)
++.|.|+.-.--...|...+.....|.++.+....+.+.|+|.+. ++..+++..
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 5 NLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHH
Confidence 567777766556678889999988899999988888999998533 344455554
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=41.51 E-value=53 Score=25.87 Aligned_cols=55 Identities=15% Similarity=0.076 Sum_probs=36.2
Q ss_pred eeeecCCCCC---------CCHHHHHHHh--hccCceEEEEEEecCCCCCcccEEEEEEcC-HHHHHHHH
Q 015091 83 TLWIGDLQYW---------MDETYLNTCF--AHTGEVVAVKVIRNKQTGQIEGYGFIEFIS-RAGAERVL 140 (413)
Q Consensus 83 ~l~v~~lp~~---------~~~~~l~~~f--~~~G~v~~~~~~~~~~~g~~~g~afV~f~~-~~~A~~a~ 140 (413)
++.|-|++.. ....+|++.| +.|..+. |+...+. .-..|+|.|+|.+ ...-..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHH
Confidence 3456666651 3457899977 8887754 6666665 3467899999985 33444444
No 410
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=40.99 E-value=67 Score=20.35 Aligned_cols=56 Identities=9% Similarity=0.058 Sum_probs=41.9
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEec----CHHHHHHHHHHh
Q 015091 283 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFA----DRSCAEEALRML 338 (413)
Q Consensus 283 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~----~~~~a~~a~~~l 338 (413)
.++.|.|+.=.--...|...+.....|.++.+....+.+.|+|. +.++..+++..+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 35677777655566788899998888988888877889999996 445666666653
No 411
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=40.51 E-value=29 Score=24.76 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHhhhCCCcceeEEEEc--CCCC--CCceeEEEEeCCHHHHHH
Q 015091 183 ADVTDYMLQETFRARYPSTKGAKVVID--RLTG--RTKGYGFVRFGDESEQLR 231 (413)
Q Consensus 183 ~~~~~~~l~~~f~~~~g~v~~~~~~~~--~~~g--~~~g~afv~f~~~~~a~~ 231 (413)
.+.+..+|++.+.+.|+.-.++.++.. ..-| ++.|||.| |++.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 577888999988777766444433332 1234 45555433 666666554
No 412
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=36.62 E-value=59 Score=24.85 Aligned_cols=49 Identities=14% Similarity=0.278 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHhhhCCCcceeEEEEcCC--CC--CCceeEEEEeCCHHHHHHH
Q 015091 183 ADVTDYMLQETFRARYPSTKGAKVVIDRL--TG--RTKGYGFVRFGDESEQLRA 232 (413)
Q Consensus 183 ~~~~~~~l~~~f~~~~g~v~~~~~~~~~~--~g--~~~g~afv~f~~~~~a~~a 232 (413)
.+.+..+|++.+.+.|+.-.++.++..-. -| .+.|||.| |++.+.|.+.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 46788899998877777655555544322 23 44555444 6666666543
No 413
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=34.42 E-value=1.2e+02 Score=21.34 Aligned_cols=68 Identities=12% Similarity=0.158 Sum_probs=45.8
Q ss_pred EEecCCCCCCHHHHHHHHh-cCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEEeccCC
Q 015091 286 FVGNLDSIVTDEHLRELFS-QYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 356 (413)
Q Consensus 286 ~v~nlp~~~~~~~l~~~f~-~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 356 (413)
+|-.++..++-+||..... .||.-.++.... ....|-..+.++-.+|++.|+-. ..-+.|+|-+...+
T Consensus 20 RIi~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n--~EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 20 RILQFPRPVKLEDLRSKAKIAFGQSMDLHYTN--NELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVING 88 (103)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHSSCEEEEECS--SSSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECC
T ss_pred EEEeccCCccHHHHHHHHHHHhCCeeeEEEec--ceEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCC
Confidence 3445677888888876554 678777776663 35778899999999999987643 33344455444433
No 414
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=33.97 E-value=58 Score=24.49 Aligned_cols=49 Identities=27% Similarity=0.424 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHhhhCCCcceeEEEEcC--CCC--CCceeEEEEeCCHHHHHHH
Q 015091 183 ADVTDYMLQETFRARYPSTKGAKVVIDR--LTG--RTKGYGFVRFGDESEQLRA 232 (413)
Q Consensus 183 ~~~~~~~l~~~f~~~~g~v~~~~~~~~~--~~g--~~~g~afv~f~~~~~a~~a 232 (413)
.+.+..+|++.+.+.|+.-.++.++..- .-| .+.|||.| |++.+.+.+.
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 4678999999998888765554444322 234 34455444 6666666543
No 415
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=33.91 E-value=80 Score=21.81 Aligned_cols=32 Identities=16% Similarity=0.384 Sum_probs=23.0
Q ss_pred eEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 015091 108 VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN 144 (413)
Q Consensus 108 v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~ 144 (413)
|.++.+.. .-.||.||++...++...+++.+.
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~ 71 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMP 71 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCT
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCC
Confidence 55555542 256999999999998888885433
No 416
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=30.61 E-value=1.5e+02 Score=23.34 Aligned_cols=53 Identities=13% Similarity=0.091 Sum_probs=33.9
Q ss_pred eEEEecCCC---------CCCHHHHHHHH--hcCCCeEEEEeeCC---CcEEEEEecCHHH-HHHHHH
Q 015091 284 TVFVGNLDS---------IVTDEHLRELF--SQYGQLVHVKIPAG---KRCGFVQFADRSC-AEEALR 336 (413)
Q Consensus 284 ~l~v~nlp~---------~~~~~~l~~~f--~~~G~i~~v~~~~~---~~~afV~f~~~~~-a~~a~~ 336 (413)
.+.|.|++. ..+..+|++.| +.|..+.-..+-.. ++++.|+|.+.-. -..|++
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 455667665 14557899977 99987764444322 5789999986533 333443
No 417
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=29.23 E-value=95 Score=18.57 Aligned_cols=53 Identities=13% Similarity=0.199 Sum_probs=36.6
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecC---HHHHHHHHHH
Q 015091 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD---RSCAEEALRM 337 (413)
Q Consensus 285 l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~---~~~a~~a~~~ 337 (413)
+.|.|+.-..-...|++.+.....|..+.+....+.+.|+|.. .++..+++..
T Consensus 5 ~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 60 (66)
T 1yg0_A 5 FQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp ECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHH
Confidence 4455554444456788888888788889998888899999864 3444455554
No 418
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=25.32 E-value=1.2e+02 Score=18.42 Aligned_cols=54 Identities=7% Similarity=0.058 Sum_probs=38.7
Q ss_pred eEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCH---HHHHHHHHH
Q 015091 284 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADR---SCAEEALRM 337 (413)
Q Consensus 284 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~---~~a~~a~~~ 337 (413)
++.|.|+.-..-...|+..+.....|..+.+....+.+.|+|... ++...++..
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHH
Confidence 466777765555677888888888899999988888999998753 333444443
No 419
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=25.23 E-value=1e+02 Score=21.18 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCCCCcccEEEEEEcC
Q 015091 107 EVVAVKVIRNKQTGQIEGYGFIEFIS 132 (413)
Q Consensus 107 ~v~~~~~~~~~~~g~~~g~afV~f~~ 132 (413)
.|++|++..-...|+-++||-|.|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888888876678999999999973
No 420
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=24.87 E-value=63 Score=20.80 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=13.2
Q ss_pred CCeEEEEeeCCCcEEEEEecCH
Q 015091 307 GQLVHVKIPAGKRCGFVQFADR 328 (413)
Q Consensus 307 G~i~~v~~~~~~~~afV~f~~~ 328 (413)
|.|++| ...++.|+|.|.|-
T Consensus 32 gtI~~V--~~~~gtC~V~F~D~ 51 (66)
T 2eqj_A 32 GTIKKI--NILKQSCFIIFEDS 51 (66)
T ss_dssp EEEEEE--ETTTTEEEEEETTT
T ss_pred eEEEEE--ccCCcEEEEEEccC
Confidence 344443 44578999999763
No 421
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=24.59 E-value=1.6e+02 Score=19.60 Aligned_cols=55 Identities=9% Similarity=0.198 Sum_probs=39.6
Q ss_pred eEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecC----HHHHHHHHHHh
Q 015091 284 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD----RSCAEEALRML 338 (413)
Q Consensus 284 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~----~~~a~~a~~~l 338 (413)
++.|.++.-..-...|...+...-.|..+.+....+.+.|+|.. .++..+++..+
T Consensus 6 ~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 6 TFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhc
Confidence 46677765444556788889888889999998888899999964 34445555543
No 422
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=24.51 E-value=1.2e+02 Score=18.34 Aligned_cols=54 Identities=4% Similarity=0.094 Sum_probs=38.1
Q ss_pred eEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCH---HHHHHHHHH
Q 015091 284 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADR---SCAEEALRM 337 (413)
Q Consensus 284 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~---~~a~~a~~~ 337 (413)
++.|.|+.-..-...|...+.....|.++.+....+.+.|+|... ++...++..
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 62 (71)
T 2xmw_A 6 NLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 62 (71)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHH
Confidence 466777755445567888898888899999988888999999743 333445554
No 423
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.25 E-value=68 Score=20.62 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=13.6
Q ss_pred CCeEEEEeeCCCcEEEEEecCH
Q 015091 307 GQLVHVKIPAGKRCGFVQFADR 328 (413)
Q Consensus 307 G~i~~v~~~~~~~~afV~f~~~ 328 (413)
|.|+.|. ..+..|+|.|+|-
T Consensus 28 GtV~kV~--~~~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVD--SAREVCLVQFEDD 47 (68)
T ss_dssp EEEEEEE--TTTTEEEEEETTT
T ss_pred eEEEEEe--cCCcEEEEEEccC
Confidence 4555554 4577999999763
No 424
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=22.78 E-value=1.4e+02 Score=18.23 Aligned_cols=55 Identities=7% Similarity=0.175 Sum_probs=37.9
Q ss_pred eEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecC----HHHHHHHHHHh
Q 015091 284 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD----RSCAEEALRML 338 (413)
Q Consensus 284 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~----~~~a~~a~~~l 338 (413)
++.|.++.-.--...|...+.....|..+.+....+.+.|.|.. .++...++..+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 6 VINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHC
Confidence 46677765444456688888888778888887778899999974 34445556543
No 425
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=22.42 E-value=83 Score=24.85 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=30.2
Q ss_pred CHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecCHHHHHHHHHHhc
Q 015091 295 TDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN 339 (413)
Q Consensus 295 ~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~~~~a~~a~~~l~ 339 (413)
.-++|++||+.|-..+ .++...+-.|.+.++|.+.+...+
T Consensus 131 ~l~~i~~fF~~YK~le-----~gK~v~v~gw~~~~~A~~~I~~~~ 170 (173)
T 3d53_A 131 LKKRIVHFFEHYKDLE-----KGKWVKVTGWGDKVKAETLIKEGI 170 (173)
T ss_dssp HHHHHHHHHHHTTTTS-----TTCCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc-----CCCcEEEccCcCHHHHHHHHHHHH
Confidence 3478999999994332 245677788999999999988653
No 426
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.38 E-value=1.7e+02 Score=20.00 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=37.7
Q ss_pred EEEecCCCCCCHHHHHHHHhc-CC-CeEEEEee---CCCcEEEEEecCHHHHHHHHHHh
Q 015091 285 VFVGNLDSIVTDEHLRELFSQ-YG-QLVHVKIP---AGKRCGFVQFADRSCAEEALRML 338 (413)
Q Consensus 285 l~v~nlp~~~~~~~l~~~f~~-~G-~i~~v~~~---~~~~~afV~f~~~~~a~~a~~~l 338 (413)
.++-.+....+..+|++.++. |+ .|.+|... .+...|||++..-.+|......+
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHHS
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 344455678899999998886 44 45555543 34568999999888887765543
No 427
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=22.04 E-value=1.4e+02 Score=18.13 Aligned_cols=55 Identities=9% Similarity=-0.004 Sum_probs=39.3
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecC----HHHHHHHHHH
Q 015091 283 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD----RSCAEEALRM 337 (413)
Q Consensus 283 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~----~~~a~~a~~~ 337 (413)
..+.|.++.-.--...|...+...-.|..+.+....+.+.|+|.. .++...++..
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 65 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIED 65 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 357777775544556788888888788889888888899999874 3344455554
No 428
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=21.92 E-value=22 Score=32.45 Aligned_cols=10 Identities=20% Similarity=0.172 Sum_probs=4.5
Q ss_pred CCHHHHHHHH
Q 015091 185 VTDYMLQETF 194 (413)
Q Consensus 185 ~~~~~l~~~f 194 (413)
.++.++..++
T Consensus 158 l~~~~~~~i~ 167 (400)
T 1nxk_A 158 FTEREASEIM 167 (400)
T ss_dssp CBHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 4454444433
No 429
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=21.75 E-value=1.2e+02 Score=21.36 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCCCCcccEEEEEEcC
Q 015091 107 EVVAVKVIRNKQTGQIEGYGFIEFIS 132 (413)
Q Consensus 107 ~v~~~~~~~~~~~g~~~g~afV~f~~ 132 (413)
.|++|++..-...|+.++||-|.|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888888876678999999999973
No 430
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=21.62 E-value=1.4e+02 Score=17.87 Aligned_cols=44 Identities=16% Similarity=0.196 Sum_probs=35.1
Q ss_pred eEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecC
Q 015091 284 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD 327 (413)
Q Consensus 284 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~ 327 (413)
++.|.|+.-..-...|...+.....|..+.+....+.+.|+|..
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~ 46 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDE 46 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECT
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECC
Confidence 46777776655667788899888789889888888899999974
No 431
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=21.38 E-value=20 Score=32.32 Aligned_cols=14 Identities=43% Similarity=0.351 Sum_probs=9.3
Q ss_pred CCCCHHHHHHHHhc
Q 015091 292 SIVTDEHLRELFSQ 305 (413)
Q Consensus 292 ~~~~~~~l~~~f~~ 305 (413)
..+++++|++....
T Consensus 227 ~~vt~~~l~~i~~~ 240 (358)
T 2pk2_A 227 ATVTLELLDELTHE 240 (358)
T ss_dssp SSCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 35678888776553
No 432
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=21.33 E-value=1.7e+02 Score=18.85 Aligned_cols=55 Identities=4% Similarity=0.079 Sum_probs=41.2
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecC----HHHHHHHHHH
Q 015091 283 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD----RSCAEEALRM 337 (413)
Q Consensus 283 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~----~~~a~~a~~~ 337 (413)
.++.|.++.-..-...|...+.....|..+.+....+.+.|+|.. .++...++..
T Consensus 11 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 69 (84)
T 1q8l_A 11 LKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEA 69 (84)
T ss_dssp EEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 457788876655567788999988889999998888899999963 3444555554
No 433
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=21.19 E-value=2.2e+02 Score=20.99 Aligned_cols=33 Identities=9% Similarity=0.004 Sum_probs=20.6
Q ss_pred CCCeEEEEeeCCCcEEEEEec---CHHHHHHHHHHh
Q 015091 306 YGQLVHVKIPAGKRCGFVQFA---DRSCAEEALRML 338 (413)
Q Consensus 306 ~G~i~~v~~~~~~~~afV~f~---~~~~a~~a~~~l 338 (413)
+-.|.+|++..|..+|-|.|. +.++...++..|
T Consensus 43 ~vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~L 78 (129)
T 2e7g_A 43 NVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVL 78 (129)
T ss_dssp TCCEEEEEECTTSCCEEEEECCCSCHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCcEEEEEEEecCChhhHHHHHHHH
Confidence 458999999999776655554 444333344333
No 434
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=21.08 E-value=1.2e+02 Score=29.88 Aligned_cols=55 Identities=9% Similarity=0.103 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHh----hccCceEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 015091 89 LQYWMDETYLNTCF----AHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN 144 (413)
Q Consensus 89 lp~~~~~~~l~~~f----~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~A~~a~~~l~ 144 (413)
...+.+--||..+| ..+|.|+++.+...+. .+.+.++++.|.+.++|.+++..+-
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHHH
Confidence 34444445788887 3678899998876553 4566789999999999999987653
No 435
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=20.92 E-value=1.3e+02 Score=21.40 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCCCCcccEEEEEEcC
Q 015091 107 EVVAVKVIRNKQTGQIEGYGFIEFIS 132 (413)
Q Consensus 107 ~v~~~~~~~~~~~g~~~g~afV~f~~ 132 (413)
.|++|++..-...|+.++||-|.|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 47888888776678999999999973
No 436
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=20.67 E-value=1.5e+02 Score=17.98 Aligned_cols=54 Identities=17% Similarity=0.144 Sum_probs=39.1
Q ss_pred eEEEecCCCCCCHHHHHHHHhcCCCeEEEEeeCCCcEEEEEecC----HHHHHHHHHH
Q 015091 284 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD----RSCAEEALRM 337 (413)
Q Consensus 284 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~afV~f~~----~~~a~~a~~~ 337 (413)
++.|.++.-..-...|...+.....|.++.+....+.+.|+|.. .++...++..
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 63 (72)
T 1osd_A 6 TLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATAD 63 (72)
T ss_dssp EEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHH
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHh
Confidence 45666665555567788889888889999988888899999964 3444555554
Done!