Query 015092
Match_columns 413
No_of_seqs 496 out of 3831
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:01:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1159 Era GTPase [General fu 100.0 4.7E-71 1E-75 514.7 35.4 295 111-408 2-297 (298)
2 PRK15494 era GTPase Era; Provi 100.0 1.2E-60 2.6E-65 470.0 36.1 289 113-405 50-338 (339)
3 PRK00089 era GTPase Era; Revie 100.0 2.3E-59 5.1E-64 453.5 38.2 290 112-406 2-292 (292)
4 TIGR00436 era GTP-binding prot 100.0 7.6E-56 1.6E-60 424.0 34.6 270 116-389 1-270 (270)
5 KOG1423 Ras-like GTPase ERA [C 100.0 1.1E-50 2.3E-55 375.3 28.0 278 113-391 70-379 (379)
6 COG1160 Predicted GTPases [Gen 100.0 4.4E-33 9.4E-38 273.6 17.2 225 116-360 4-235 (444)
7 PRK12298 obgE GTPase CgtA; Rev 100.0 1E-27 2.2E-32 239.4 19.7 193 117-312 161-362 (390)
8 COG0486 ThdF Predicted GTPase 99.9 2.3E-26 5E-31 226.8 14.9 162 115-285 217-378 (454)
9 PF02421 FeoB_N: Ferrous iron 99.9 2.3E-25 5.1E-30 194.0 11.5 155 117-278 2-156 (156)
10 PRK03003 GTP-binding protein D 99.9 8.6E-25 1.9E-29 224.9 16.1 224 116-361 39-269 (472)
11 TIGR03594 GTPase_EngA ribosome 99.9 2.1E-24 4.6E-29 219.9 15.9 223 117-361 1-230 (429)
12 COG1160 Predicted GTPases [Gen 99.9 1E-23 2.2E-28 207.6 17.5 207 114-332 177-390 (444)
13 KOG1144 Translation initiation 99.9 6.3E-24 1.4E-28 215.6 16.0 221 109-369 469-748 (1064)
14 PRK09518 bifunctional cytidyla 99.9 1E-23 2.3E-28 226.6 17.3 227 115-361 275-508 (712)
15 cd04163 Era Era subfamily. Er 99.9 2.1E-22 4.6E-27 176.2 19.6 166 114-282 2-168 (168)
16 PRK00093 GTP-binding protein D 99.9 5.4E-23 1.2E-27 210.0 17.5 223 116-361 2-231 (435)
17 cd01894 EngA1 EngA1 subfamily. 99.9 1.3E-22 2.8E-27 176.8 17.4 157 119-282 1-157 (157)
18 cd01897 NOG NOG1 is a nucleola 99.9 5.3E-22 1.2E-26 175.6 17.0 163 116-282 1-167 (168)
19 PRK03003 GTP-binding protein D 99.9 3.8E-21 8.2E-26 198.0 25.6 169 114-284 210-383 (472)
20 PRK00093 GTP-binding protein D 99.9 6.5E-21 1.4E-25 194.7 27.1 168 114-283 172-344 (435)
21 PRK05291 trmE tRNA modificatio 99.9 1.8E-22 4E-27 205.9 14.3 157 115-284 215-371 (449)
22 cd01895 EngA2 EngA2 subfamily. 99.9 2.2E-21 4.9E-26 171.3 18.7 165 115-281 2-173 (174)
23 TIGR03156 GTP_HflX GTP-binding 99.9 1.2E-21 2.5E-26 193.7 18.5 158 116-281 190-350 (351)
24 TIGR03594 GTPase_EngA ribosome 99.9 1.4E-21 3E-26 199.2 19.5 168 114-283 171-344 (429)
25 cd01898 Obg Obg subfamily. Th 99.9 7.4E-22 1.6E-26 174.9 14.6 163 117-282 2-170 (170)
26 cd04171 SelB SelB subfamily. 99.9 2.7E-21 5.8E-26 169.8 17.4 154 117-280 2-163 (164)
27 PRK09518 bifunctional cytidyla 99.9 2.3E-20 4.9E-25 200.9 26.5 169 114-284 449-622 (712)
28 PF00009 GTP_EFTU: Elongation 99.9 1.3E-21 2.8E-26 177.4 14.2 157 115-283 3-187 (188)
29 PRK12299 obgE GTPase CgtA; Rev 99.9 2.2E-21 4.8E-26 190.3 16.8 164 117-284 160-329 (335)
30 cd04164 trmE TrmE (MnmE, ThdF, 99.9 9.1E-21 2E-25 164.9 17.8 154 117-282 3-156 (157)
31 cd01889 SelB_euk SelB subfamil 99.9 6.3E-21 1.4E-25 173.3 16.5 157 117-284 2-187 (192)
32 PLN03071 GTP-binding nuclear p 99.9 2.1E-20 4.6E-25 173.6 20.2 194 113-318 11-215 (219)
33 cd01890 LepA LepA subfamily. 99.9 8.9E-21 1.9E-25 169.6 16.5 156 117-284 2-178 (179)
34 cd00881 GTP_translation_factor 99.9 1.1E-20 2.4E-25 169.8 16.2 157 117-284 1-188 (189)
35 PRK12296 obgE GTPase CgtA; Rev 99.9 1.1E-20 2.3E-25 192.4 17.2 164 116-284 160-341 (500)
36 PRK04213 GTP-binding protein; 99.9 3.2E-20 7E-25 169.6 18.7 163 114-284 8-193 (201)
37 KOG1191 Mitochondrial GTPase [ 99.9 4.1E-21 8.9E-26 189.2 13.1 168 114-282 267-449 (531)
38 cd01861 Rab6 Rab6 subfamily. 99.9 2.1E-20 4.6E-25 164.0 16.3 155 117-282 2-161 (161)
39 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 3.3E-20 7.2E-25 163.8 17.5 156 116-283 1-166 (168)
40 cd04158 ARD1 ARD1 subfamily. 99.9 2E-20 4.3E-25 166.4 16.1 157 117-287 1-165 (169)
41 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1.4E-20 2.9E-25 166.4 14.9 155 117-280 1-166 (167)
42 TIGR02729 Obg_CgtA Obg family 99.9 1.2E-20 2.6E-25 184.9 16.0 162 117-282 159-328 (329)
43 cd01878 HflX HflX subfamily. 99.9 3.3E-20 7.2E-25 170.0 17.8 160 116-282 42-204 (204)
44 cd04154 Arl2 Arl2 subfamily. 99.9 2.8E-20 6.1E-25 166.0 16.8 154 114-280 13-172 (173)
45 cd04112 Rab26 Rab26 subfamily. 99.8 2E-20 4.3E-25 169.9 15.9 164 117-291 2-171 (191)
46 cd01879 FeoB Ferrous iron tran 99.8 1.5E-20 3.1E-25 164.3 14.4 156 120-282 1-156 (158)
47 TIGR00450 mnmE_trmE_thdF tRNA 99.8 2.2E-20 4.8E-25 189.8 17.9 158 114-282 202-359 (442)
48 TIGR03598 GTPase_YsxC ribosome 99.8 3.2E-20 6.9E-25 166.8 16.9 157 111-272 14-179 (179)
49 PRK05306 infB translation init 99.8 1.8E-20 3.9E-25 200.4 17.6 204 112-339 287-497 (787)
50 smart00178 SAR Sar1p-like memb 99.8 3E-20 6.6E-25 167.8 16.4 155 114-281 16-183 (184)
51 cd04149 Arf6 Arf6 subfamily. 99.8 3E-20 6.5E-25 165.3 16.1 154 114-280 8-167 (168)
52 COG0218 Predicted GTPase [Gene 99.8 1.3E-19 2.8E-24 161.5 19.9 168 111-283 20-197 (200)
53 PRK11058 GTPase HflX; Provisio 99.8 3.5E-20 7.6E-25 187.3 18.3 163 116-284 198-363 (426)
54 cd01864 Rab19 Rab19 subfamily. 99.8 5.8E-20 1.3E-24 162.4 17.3 157 116-282 4-165 (165)
55 PRK12297 obgE GTPase CgtA; Rev 99.8 3E-20 6.4E-25 186.9 17.0 164 117-287 160-331 (424)
56 CHL00189 infB translation init 99.8 1E-20 2.2E-25 200.6 14.0 203 113-338 242-454 (742)
57 cd01881 Obg_like The Obg-like 99.8 1.5E-20 3.4E-25 167.1 12.7 159 120-281 1-175 (176)
58 cd04138 H_N_K_Ras_like H-Ras/N 99.8 6.6E-20 1.4E-24 160.5 16.5 155 116-282 2-161 (162)
59 cd04142 RRP22 RRP22 subfamily. 99.8 5.4E-20 1.2E-24 168.2 16.4 165 117-283 2-174 (198)
60 cd01884 EF_Tu EF-Tu subfamily. 99.8 8.7E-20 1.9E-24 166.2 17.6 145 116-271 3-171 (195)
61 PRK00454 engB GTP-binding prot 99.8 1.7E-19 3.8E-24 163.7 19.3 166 114-284 23-195 (196)
62 smart00173 RAS Ras subfamily o 99.8 5.2E-20 1.1E-24 162.2 14.9 155 117-283 2-162 (164)
63 cd01860 Rab5_related Rab5-rela 99.8 1E-19 2.3E-24 159.9 16.7 157 116-283 2-163 (163)
64 cd01865 Rab3 Rab3 subfamily. 99.8 6.3E-20 1.4E-24 162.3 15.4 156 116-283 2-163 (165)
65 cd04145 M_R_Ras_like M-Ras/R-R 99.8 8.9E-20 1.9E-24 160.4 16.2 155 116-282 3-163 (164)
66 cd04136 Rap_like Rap-like subf 99.8 7E-20 1.5E-24 160.9 15.5 155 116-282 2-162 (163)
67 cd01867 Rab8_Rab10_Rab13_like 99.8 9.2E-20 2E-24 161.6 15.6 156 116-282 4-164 (167)
68 cd04157 Arl6 Arl6 subfamily. 99.8 9.3E-20 2E-24 160.0 15.5 151 117-280 1-161 (162)
69 KOG0092 GTPase Rab5/YPT51 and 99.8 4.3E-20 9.4E-25 161.7 13.1 164 114-287 4-171 (200)
70 cd04166 CysN_ATPS CysN_ATPS su 99.8 4.8E-20 1E-24 169.8 13.9 156 117-290 1-194 (208)
71 cd04140 ARHI_like ARHI subfami 99.8 1.3E-19 2.8E-24 160.4 16.1 153 116-281 2-163 (165)
72 cd01866 Rab2 Rab2 subfamily. 99.8 1E-19 2.2E-24 161.5 15.5 158 116-283 5-166 (168)
73 PLN03118 Rab family protein; P 99.8 9E-20 1.9E-24 168.3 15.6 165 114-289 13-183 (211)
74 cd01874 Cdc42 Cdc42 subfamily. 99.8 1.3E-19 2.8E-24 162.4 16.2 155 116-281 2-173 (175)
75 cd04156 ARLTS1 ARLTS1 subfamil 99.8 1.5E-19 3.3E-24 158.5 16.3 152 117-280 1-159 (160)
76 cd01868 Rab11_like Rab11-like. 99.8 1.5E-19 3.2E-24 159.5 16.3 156 116-282 4-164 (165)
77 TIGR00487 IF-2 translation ini 99.8 1.1E-19 2.4E-24 190.0 17.9 202 113-338 85-294 (587)
78 PRK09602 translation-associate 99.8 1.9E-19 4.1E-24 180.2 18.8 191 116-316 2-301 (396)
79 cd01888 eIF2_gamma eIF2-gamma 99.8 1.6E-19 3.4E-24 165.7 16.8 160 117-286 2-202 (203)
80 PRK12739 elongation factor G; 99.8 3.8E-20 8.3E-25 198.5 14.7 231 114-359 7-360 (691)
81 COG0532 InfB Translation initi 99.8 7.8E-19 1.7E-23 175.9 22.9 158 113-282 3-169 (509)
82 cd04150 Arf1_5_like Arf1-Arf5- 99.8 2.2E-19 4.8E-24 158.2 16.8 151 117-280 2-158 (159)
83 cd04175 Rap1 Rap1 subgroup. T 99.8 1.2E-19 2.6E-24 160.1 15.0 155 116-282 2-162 (164)
84 cd01891 TypA_BipA TypA (tyrosi 99.8 1.9E-19 4E-24 163.9 16.7 157 116-283 3-192 (194)
85 cd04119 RJL RJL (RabJ-Like) su 99.8 1.4E-19 3E-24 159.4 15.4 154 117-282 2-166 (168)
86 cd04122 Rab14 Rab14 subfamily. 99.8 1.4E-19 3E-24 160.2 15.4 155 116-282 3-163 (166)
87 smart00177 ARF ARF-like small 99.8 2E-19 4.3E-24 161.1 16.5 156 114-282 12-173 (175)
88 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 1.9E-19 4.1E-24 159.1 16.0 156 116-282 3-163 (166)
89 TIGR01393 lepA GTP-binding pro 99.8 1.4E-19 3E-24 190.1 17.6 200 116-341 4-225 (595)
90 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 2.3E-19 5E-24 161.9 16.7 161 114-283 2-170 (183)
91 cd04120 Rab12 Rab12 subfamily. 99.8 2.4E-19 5.3E-24 164.2 17.1 155 117-283 2-163 (202)
92 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 2.5E-19 5.4E-24 160.2 16.8 153 115-280 15-173 (174)
93 PRK00007 elongation factor G; 99.8 6.9E-20 1.5E-24 196.4 15.6 234 115-363 10-367 (693)
94 cd04151 Arl1 Arl1 subfamily. 99.8 2.1E-19 4.5E-24 157.8 15.9 151 117-280 1-157 (158)
95 PRK00741 prfC peptide chain re 99.8 6.4E-20 1.4E-24 189.9 14.6 236 114-363 9-353 (526)
96 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 1.7E-19 3.6E-24 161.1 15.5 155 116-283 3-164 (172)
97 cd01863 Rab18 Rab18 subfamily. 99.8 3.2E-19 6.9E-24 156.6 16.9 155 117-281 2-160 (161)
98 PLN00223 ADP-ribosylation fact 99.8 3.3E-19 7.1E-24 160.7 17.3 157 114-283 16-178 (181)
99 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 2.5E-19 5.5E-24 164.0 16.7 157 117-284 2-169 (201)
100 cd04124 RabL2 RabL2 subfamily. 99.8 2.5E-19 5.4E-24 158.0 16.1 154 117-283 2-158 (161)
101 cd04116 Rab9 Rab9 subfamily. 99.8 3.3E-19 7.2E-24 158.2 16.9 156 116-281 6-169 (170)
102 cd00877 Ran Ran (Ras-related n 99.8 1.8E-19 3.9E-24 159.9 15.2 157 117-285 2-161 (166)
103 cd01893 Miro1 Miro1 subfamily. 99.8 2.6E-19 5.6E-24 158.6 16.1 155 117-282 2-163 (166)
104 COG1084 Predicted GTPase [Gene 99.8 2.6E-19 5.5E-24 169.3 16.8 176 105-284 158-337 (346)
105 smart00175 RAB Rab subfamily o 99.8 2.6E-19 5.6E-24 157.3 15.9 155 117-283 2-162 (164)
106 cd04144 Ras2 Ras2 subfamily. 99.8 1.1E-19 2.4E-24 164.9 13.9 155 117-283 1-163 (190)
107 cd04113 Rab4 Rab4 subfamily. 99.8 2.2E-19 4.8E-24 157.8 15.4 154 117-281 2-160 (161)
108 TIGR00484 EF-G translation elo 99.8 9.3E-20 2E-24 195.6 15.6 232 115-361 10-363 (689)
109 cd00879 Sar1 Sar1 subfamily. 99.8 4E-19 8.7E-24 160.7 17.4 156 114-282 18-190 (190)
110 smart00174 RHO Rho (Ras homolo 99.8 1.6E-19 3.5E-24 160.7 14.2 154 118-282 1-171 (174)
111 TIGR00503 prfC peptide chain r 99.8 9.5E-20 2.1E-24 188.6 14.5 236 114-363 10-354 (527)
112 cd04133 Rop_like Rop subfamily 99.8 2.8E-19 6.2E-24 160.3 15.4 155 117-283 3-173 (176)
113 TIGR02528 EutP ethanolamine ut 99.8 2.2E-19 4.8E-24 154.6 14.2 140 117-279 2-141 (142)
114 cd04101 RabL4 RabL4 (Rab-like4 99.8 5.6E-19 1.2E-23 155.6 17.1 155 117-282 2-163 (164)
115 cd04134 Rho3 Rho3 subfamily. 99.8 3.1E-19 6.6E-24 161.9 15.8 156 117-283 2-174 (189)
116 TIGR00231 small_GTP small GTP- 99.8 4.3E-19 9.3E-24 153.3 16.0 157 116-279 2-160 (161)
117 PTZ00369 Ras-like protein; Pro 99.8 2.9E-19 6.4E-24 161.9 15.4 157 115-283 5-167 (189)
118 cd04176 Rap2 Rap2 subgroup. T 99.8 3E-19 6.6E-24 157.2 14.9 155 116-282 2-162 (163)
119 cd04132 Rho4_like Rho4-like su 99.8 4.6E-19 9.9E-24 160.0 16.4 157 117-284 2-168 (187)
120 cd04128 Spg1 Spg1p. Spg1p (se 99.8 4.3E-19 9.4E-24 160.0 16.1 157 117-286 2-169 (182)
121 cd00878 Arf_Arl Arf (ADP-ribos 99.8 3.9E-19 8.5E-24 155.7 15.4 151 117-280 1-157 (158)
122 cd01875 RhoG RhoG subfamily. 99.8 4E-19 8.8E-24 161.4 16.0 158 115-283 3-177 (191)
123 cd01871 Rac1_like Rac1-like su 99.8 4.4E-19 9.5E-24 158.8 15.9 155 116-281 2-173 (174)
124 cd04168 TetM_like Tet(M)-like 99.8 4.7E-19 1E-23 166.3 16.8 157 117-284 1-236 (237)
125 cd01886 EF-G Elongation factor 99.8 4.3E-19 9.3E-24 169.5 16.7 113 117-240 1-130 (270)
126 cd04125 RabA_like RabA-like su 99.8 3.9E-19 8.5E-24 160.8 15.5 157 117-283 2-162 (188)
127 PRK10218 GTP-binding protein; 99.8 6.7E-19 1.4E-23 184.4 19.5 201 116-340 6-239 (607)
128 cd04147 Ras_dva Ras-dva subfam 99.8 5.1E-19 1.1E-23 161.6 16.3 162 117-290 1-170 (198)
129 TIGR01394 TypA_BipA GTP-bindin 99.8 4.9E-19 1.1E-23 185.6 18.4 201 117-341 3-236 (594)
130 cd01862 Rab7 Rab7 subfamily. 99.8 6.8E-19 1.5E-23 156.0 16.4 157 117-283 2-167 (172)
131 PRK15467 ethanolamine utilizat 99.8 4.7E-19 1E-23 156.1 15.2 146 117-284 3-148 (158)
132 cd00880 Era_like Era (E. coli 99.8 6.5E-19 1.4E-23 152.2 15.8 158 120-281 1-162 (163)
133 TIGR00491 aIF-2 translation in 99.8 1.8E-18 4E-23 180.6 22.0 156 113-281 2-214 (590)
134 cd04117 Rab15 Rab15 subfamily. 99.8 8.6E-19 1.9E-23 154.6 16.8 154 117-281 2-160 (161)
135 cd04109 Rab28 Rab28 subfamily. 99.8 6.6E-19 1.4E-23 163.0 16.7 156 117-284 2-167 (215)
136 cd04106 Rab23_lke Rab23-like s 99.8 7.4E-19 1.6E-23 154.3 15.9 152 117-281 2-161 (162)
137 cd00154 Rab Rab family. Rab G 99.8 8.4E-19 1.8E-23 152.1 16.1 153 117-279 2-158 (159)
138 cd00157 Rho Rho (Ras homology) 99.8 4.5E-19 9.7E-24 157.0 14.5 153 117-280 2-170 (171)
139 PRK05433 GTP-binding protein L 99.8 6.9E-19 1.5E-23 185.0 18.3 199 116-340 8-228 (600)
140 PRK09554 feoB ferrous iron tra 99.8 5.2E-19 1.1E-23 190.0 17.5 163 114-283 2-168 (772)
141 cd04135 Tc10 TC10 subfamily. 99.8 5.3E-19 1.2E-23 157.4 14.7 155 117-282 2-173 (174)
142 cd04121 Rab40 Rab40 subfamily. 99.8 9.6E-19 2.1E-23 158.7 16.6 156 115-283 6-167 (189)
143 PRK12317 elongation factor 1-a 99.8 2.2E-19 4.8E-24 182.8 13.8 149 114-273 5-195 (425)
144 PTZ00133 ADP-ribosylation fact 99.8 1.2E-18 2.6E-23 157.1 17.0 157 114-283 16-178 (182)
145 cd04123 Rab21 Rab21 subfamily. 99.8 1E-18 2.2E-23 152.9 16.2 155 117-282 2-161 (162)
146 cd04126 Rab20 Rab20 subfamily. 99.8 9E-19 1.9E-23 162.4 16.5 154 117-283 2-190 (220)
147 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 7.9E-19 1.7E-23 156.5 15.6 156 117-284 2-166 (170)
148 cd04127 Rab27A Rab27a subfamil 99.8 1.2E-18 2.6E-23 156.1 16.0 155 116-282 5-176 (180)
149 cd00876 Ras Ras family. The R 99.8 1.2E-18 2.6E-23 152.1 15.6 154 117-282 1-160 (160)
150 cd04118 Rab24 Rab24 subfamily. 99.8 1.4E-18 3.1E-23 157.6 16.4 155 117-283 2-166 (193)
151 cd01892 Miro2 Miro2 subfamily. 99.8 9.8E-19 2.1E-23 155.7 14.7 159 114-283 3-166 (169)
152 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 1.5E-18 3.2E-23 156.5 16.0 156 115-281 5-178 (182)
153 cd04139 RalA_RalB RalA/RalB su 99.8 1.6E-18 3.5E-23 152.1 15.8 153 117-282 2-161 (164)
154 cd04110 Rab35 Rab35 subfamily. 99.8 1.2E-18 2.6E-23 159.3 15.5 156 115-283 6-167 (199)
155 cd04131 Rnd Rnd subfamily. Th 99.8 1.3E-18 2.9E-23 156.3 15.4 153 117-281 3-174 (178)
156 cd04114 Rab30 Rab30 subfamily. 99.8 2.1E-18 4.5E-23 152.7 16.5 157 115-282 7-168 (169)
157 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 1.9E-18 4.1E-23 151.5 15.7 166 111-286 18-188 (221)
158 KOG0462 Elongation factor-type 99.8 2.1E-18 4.6E-23 171.5 17.9 198 116-338 61-277 (650)
159 cd01870 RhoA_like RhoA-like su 99.8 1.6E-18 3.4E-23 154.4 15.3 156 116-282 2-174 (175)
160 COG0370 FeoB Fe2+ transport sy 99.8 1.4E-18 3.1E-23 178.5 16.7 165 115-286 3-167 (653)
161 PRK12736 elongation factor Tu; 99.8 1.2E-18 2.6E-23 175.4 15.9 203 114-340 11-245 (394)
162 cd04161 Arl2l1_Arl13_like Arl2 99.8 2.5E-18 5.4E-23 152.7 15.9 151 117-280 1-166 (167)
163 cd04155 Arl3 Arl3 subfamily. 99.8 3.6E-18 7.8E-23 151.9 16.9 154 114-280 13-172 (173)
164 COG2262 HflX GTPases [General 99.8 1.6E-18 3.5E-23 168.6 15.7 164 115-285 192-358 (411)
165 cd04130 Wrch_1 Wrch-1 subfamil 99.8 2E-18 4.3E-23 154.0 15.3 152 117-279 2-170 (173)
166 CHL00071 tufA elongation facto 99.8 1.4E-18 3.1E-23 175.7 16.0 159 114-283 11-211 (409)
167 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 2.8E-18 6.1E-23 160.2 16.7 156 115-282 13-187 (232)
168 cd04177 RSR1 RSR1 subgroup. R 99.8 2.7E-18 5.9E-23 152.3 15.8 155 117-282 3-163 (168)
169 cd04169 RF3 RF3 subfamily. Pe 99.8 4.3E-18 9.3E-23 162.4 18.2 114 116-240 3-137 (267)
170 PRK10512 selenocysteinyl-tRNA- 99.8 2.9E-18 6.2E-23 180.7 18.3 157 117-284 2-167 (614)
171 TIGR00475 selB selenocysteine- 99.8 5.2E-18 1.1E-22 178.1 20.2 157 117-284 2-167 (581)
172 PLN03110 Rab GTPase; Provision 99.8 2.2E-18 4.7E-23 159.7 15.2 157 116-283 13-174 (216)
173 cd04143 Rhes_like Rhes_like su 99.8 3.9E-18 8.4E-23 161.0 16.9 155 117-283 2-171 (247)
174 PLN03127 Elongation factor Tu; 99.8 3.2E-18 6.9E-23 174.2 17.5 201 114-338 60-294 (447)
175 KOG1145 Mitochondrial translat 99.8 4.9E-18 1.1E-22 168.9 17.9 196 112-336 150-358 (683)
176 cd04159 Arl10_like Arl10-like 99.8 4.7E-18 1E-22 147.6 15.9 151 118-280 2-158 (159)
177 PF01926 MMR_HSR1: 50S ribosom 99.8 2.3E-18 4.9E-23 143.5 13.3 116 117-235 1-116 (116)
178 cd04115 Rab33B_Rab33A Rab33B/R 99.8 5.6E-18 1.2E-22 150.7 16.6 158 115-282 2-168 (170)
179 smart00176 RAN Ran (Ras-relate 99.8 3.8E-18 8.2E-23 156.1 15.7 164 121-296 1-175 (200)
180 cd01896 DRG The developmentall 99.8 4.1E-18 8.9E-23 159.6 16.3 156 117-283 2-226 (233)
181 KOG0084 GTPase Rab1/YPT1, smal 99.8 3.8E-18 8.1E-23 150.1 14.5 160 115-283 9-172 (205)
182 KOG0394 Ras-related GTPase [Ge 99.8 2.1E-18 4.5E-23 149.8 12.4 160 116-285 10-180 (210)
183 PRK13351 elongation factor G; 99.8 1.3E-18 2.9E-23 187.0 13.9 211 115-340 8-340 (687)
184 PRK12735 elongation factor Tu; 99.8 6E-18 1.3E-22 170.5 17.5 160 114-284 11-204 (396)
185 cd04111 Rab39 Rab39 subfamily. 99.8 5.8E-18 1.2E-22 156.3 15.8 157 116-283 3-166 (211)
186 cd04146 RERG_RasL11_like RERG/ 99.8 1.8E-18 4E-23 152.8 12.0 154 117-282 1-163 (165)
187 PRK00049 elongation factor Tu; 99.8 8.2E-18 1.8E-22 169.4 17.6 203 114-340 11-247 (396)
188 cd01876 YihA_EngB The YihA (En 99.8 2.6E-17 5.7E-22 144.3 18.6 160 118-282 2-170 (170)
189 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 5E-18 1.1E-22 150.4 14.0 149 118-280 2-163 (164)
190 PF00025 Arf: ADP-ribosylation 99.8 1.2E-17 2.6E-22 149.7 16.5 156 113-281 12-174 (175)
191 KOG1489 Predicted GTP-binding 99.8 2.4E-18 5.1E-23 161.5 11.8 160 117-281 198-365 (366)
192 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 1.2E-17 2.6E-22 155.0 16.5 156 116-282 2-175 (222)
193 cd04165 GTPBP1_like GTPBP1-lik 99.8 2E-17 4.3E-22 153.9 17.9 153 117-280 1-220 (224)
194 cd01852 AIG1 AIG1 (avrRpt2-ind 99.8 4.9E-18 1.1E-22 154.9 13.6 174 117-292 2-194 (196)
195 TIGR00485 EF-Tu translation el 99.8 1.4E-17 3E-22 167.9 18.0 202 114-339 11-244 (394)
196 cd01899 Ygr210 Ygr210 subfamil 99.8 1.8E-17 3.8E-22 161.4 18.0 169 118-292 1-278 (318)
197 cd04137 RheB Rheb (Ras Homolog 99.8 8.9E-18 1.9E-22 150.5 14.7 156 116-283 2-163 (180)
198 cd04148 RGK RGK subfamily. Th 99.8 8.7E-18 1.9E-22 156.2 15.0 155 117-283 2-163 (221)
199 TIGR00437 feoB ferrous iron tr 99.8 6.7E-18 1.4E-22 177.5 15.9 154 122-282 1-154 (591)
200 PLN03108 Rab family protein; P 99.8 1.2E-17 2.6E-22 154.1 15.7 157 116-283 7-168 (210)
201 PRK04004 translation initiatio 99.8 7.9E-17 1.7E-21 168.9 23.1 156 112-280 3-215 (586)
202 cd04170 EF-G_bact Elongation f 99.8 1.8E-17 3.9E-22 158.6 16.3 113 117-240 1-130 (268)
203 COG1163 DRG Predicted GTPase [ 99.8 5E-18 1.1E-22 160.0 11.2 156 117-282 65-288 (365)
204 cd01883 EF1_alpha Eukaryotic e 99.7 1.3E-17 2.8E-22 154.9 13.2 146 117-272 1-194 (219)
205 cd04103 Centaurin_gamma Centau 99.7 4.2E-17 9.1E-22 143.7 15.1 148 117-281 2-157 (158)
206 cd04129 Rho2 Rho2 subfamily. 99.7 4.2E-17 9E-22 147.6 14.9 156 117-283 3-173 (187)
207 PRK09866 hypothetical protein; 99.7 8.5E-17 1.8E-21 164.9 18.3 116 163-282 230-352 (741)
208 PLN03126 Elongation factor Tu; 99.7 3.9E-17 8.4E-22 167.2 15.8 203 114-340 80-324 (478)
209 cd01873 RhoBTB RhoBTB subfamil 99.7 6.3E-17 1.4E-21 147.6 15.4 154 116-281 3-194 (195)
210 PTZ00132 GTP-binding nuclear p 99.7 1.6E-16 3.4E-21 147.0 17.8 170 114-295 8-180 (215)
211 PF10662 PduV-EutP: Ethanolami 99.7 8.1E-17 1.8E-21 137.5 13.8 139 117-279 3-142 (143)
212 TIGR00483 EF-1_alpha translati 99.7 3.9E-17 8.5E-22 166.3 14.0 149 115-273 7-197 (426)
213 PRK12740 elongation factor G; 99.7 2.8E-17 6.2E-22 176.3 13.5 223 121-358 1-341 (668)
214 COG0481 LepA Membrane GTPase L 99.7 4E-17 8.6E-22 160.1 13.2 198 116-339 10-229 (603)
215 KOG0078 GTP-binding protein SE 99.7 8.3E-17 1.8E-21 143.6 13.7 158 114-283 11-174 (207)
216 TIGR03680 eif2g_arch translati 99.7 1E-16 2.2E-21 162.1 16.2 161 114-284 3-197 (406)
217 cd01885 EF2 EF2 (for archaea a 99.7 1.8E-16 3.9E-21 147.0 16.1 112 117-239 2-138 (222)
218 KOG0098 GTPase Rab2, small G p 99.7 7.2E-17 1.6E-21 140.5 12.4 157 116-282 7-167 (216)
219 PF00071 Ras: Ras family; Int 99.7 8.8E-17 1.9E-21 141.2 12.8 154 117-282 1-160 (162)
220 PRK05124 cysN sulfate adenylyl 99.7 1E-16 2.2E-21 164.6 14.7 150 115-274 27-216 (474)
221 TIGR02034 CysN sulfate adenyly 99.7 1.1E-16 2.3E-21 161.9 14.5 147 117-273 2-187 (406)
222 cd00882 Ras_like_GTPase Ras-li 99.7 2.1E-16 4.6E-21 134.7 14.3 149 120-279 1-156 (157)
223 COG0536 Obg Predicted GTPase [ 99.7 7.1E-17 1.5E-21 153.4 11.9 164 117-285 161-335 (369)
224 PRK04000 translation initiatio 99.7 2.2E-16 4.7E-21 159.7 16.1 160 115-284 9-202 (411)
225 KOG0080 GTPase Rab18, small G 99.7 1.5E-16 3.2E-21 135.1 11.0 161 115-287 11-178 (209)
226 COG3596 Predicted GTPase [Gene 99.7 2.9E-16 6.2E-21 145.5 13.8 173 112-286 36-225 (296)
227 PRK05506 bifunctional sulfate 99.7 2.3E-16 5E-21 168.0 14.8 149 115-273 24-211 (632)
228 PTZ00141 elongation factor 1- 99.7 1.9E-16 4.1E-21 161.5 13.5 156 115-281 7-223 (446)
229 KOG0087 GTPase Rab11/YPT3, sma 99.7 2.8E-16 6E-21 139.7 11.3 157 116-282 15-175 (222)
230 cd04167 Snu114p Snu114p subfam 99.7 3.3E-16 7.2E-21 144.7 12.0 157 117-284 2-212 (213)
231 COG1217 TypA Predicted membran 99.7 2.6E-15 5.6E-20 147.1 18.6 195 117-336 7-235 (603)
232 PTZ00327 eukaryotic translatio 99.7 6.7E-16 1.5E-20 157.1 15.1 161 115-285 34-235 (460)
233 KOG0073 GTP-binding ADP-ribosy 99.7 2E-15 4.3E-20 128.9 14.9 156 114-283 15-178 (185)
234 COG0480 FusA Translation elong 99.7 3E-16 6.5E-21 165.7 11.4 235 114-363 9-365 (697)
235 PRK07560 elongation factor EF- 99.7 2.7E-16 5.9E-21 169.8 10.4 213 114-341 19-326 (731)
236 cd04104 p47_IIGP_like p47 (47- 99.6 2.1E-15 4.6E-20 137.7 13.5 159 116-284 2-185 (197)
237 PRK09435 membrane ATPase/prote 99.6 4.4E-15 9.5E-20 144.9 15.1 185 114-319 55-296 (332)
238 COG4108 PrfC Peptide chain rel 99.6 2.5E-15 5.5E-20 146.4 12.5 118 114-242 11-149 (528)
239 KOG0095 GTPase Rab30, small G 99.6 3.7E-15 8.1E-20 125.0 11.5 154 116-282 8-168 (213)
240 KOG0079 GTP-binding protein H- 99.6 4.2E-15 9.1E-20 124.6 11.6 153 117-282 10-168 (198)
241 KOG1424 Predicted GTP-binding 99.6 7.3E-16 1.6E-20 152.9 7.8 154 13-179 217-375 (562)
242 PLN00043 elongation factor 1-a 99.6 5.4E-15 1.2E-19 150.8 13.9 147 115-272 7-202 (447)
243 KOG0086 GTPase Rab4, small G p 99.6 1.1E-14 2.3E-19 122.8 12.5 153 116-280 10-168 (214)
244 cd04105 SR_beta Signal recogni 99.6 1.7E-14 3.7E-19 132.3 15.2 115 116-241 1-124 (203)
245 KOG0070 GTP-binding ADP-ribosy 99.6 8.2E-15 1.8E-19 128.2 11.9 159 112-283 14-178 (181)
246 KOG0093 GTPase Rab3, small G p 99.6 1.2E-14 2.7E-19 121.7 12.4 155 117-283 23-183 (193)
247 KOG0075 GTP-binding ADP-ribosy 99.6 7.3E-15 1.6E-19 123.1 10.7 155 117-283 22-182 (186)
248 KOG0088 GTPase Rab21, small G 99.6 1.2E-15 2.5E-20 129.3 5.3 155 116-283 14-175 (218)
249 TIGR00490 aEF-2 translation el 99.6 1.6E-15 3.6E-20 163.4 6.9 116 114-240 18-152 (720)
250 COG2229 Predicted GTPase [Gene 99.6 9.5E-14 2.1E-18 121.4 16.4 158 113-281 8-176 (187)
251 PTZ00258 GTP-binding protein; 99.6 3.5E-14 7.7E-19 141.0 14.7 90 114-206 20-126 (390)
252 KOG0395 Ras-related GTPase [Ge 99.6 4.2E-14 9.1E-19 128.7 13.1 158 114-283 2-165 (196)
253 cd01882 BMS1 Bms1. Bms1 is an 99.6 9.4E-14 2E-18 129.5 15.7 135 116-269 40-182 (225)
254 COG5256 TEF1 Translation elong 99.6 1.3E-13 2.9E-18 134.4 16.6 149 115-273 7-201 (428)
255 KOG1490 GTP-binding protein CR 99.5 1.5E-14 3.3E-19 142.9 8.3 172 105-278 158-336 (620)
256 KOG0465 Mitochondrial elongati 99.5 2.1E-14 4.5E-19 144.7 9.1 236 114-365 38-397 (721)
257 KOG0091 GTPase Rab39, small G 99.5 5.5E-14 1.2E-18 119.9 10.3 156 116-282 9-172 (213)
258 cd04102 RabL3 RabL3 (Rab-like3 99.5 2.8E-13 6E-18 124.1 15.5 114 117-241 2-144 (202)
259 COG1100 GTPase SAR1 and relate 99.5 3.7E-13 8.1E-18 124.3 15.9 159 116-283 6-185 (219)
260 KOG0076 GTP-binding ADP-ribosy 99.5 5.6E-14 1.2E-18 121.2 8.7 161 116-285 18-189 (197)
261 PRK14845 translation initiatio 99.5 5.2E-13 1.1E-17 146.4 17.8 150 117-282 467-672 (1049)
262 cd01853 Toc34_like Toc34-like 99.5 4E-13 8.8E-18 126.7 14.7 128 114-241 30-164 (249)
263 PTZ00099 rab6; Provisional 99.5 2E-13 4.4E-18 122.4 11.5 116 160-286 26-145 (176)
264 PF08477 Miro: Miro-like prote 99.5 8.4E-14 1.8E-18 116.0 8.5 111 117-237 1-119 (119)
265 PRK09601 GTP-binding protein Y 99.5 4.7E-13 1E-17 131.6 15.0 88 116-206 3-107 (364)
266 KOG0071 GTP-binding ADP-ribosy 99.5 8.5E-13 1.8E-17 109.9 13.4 157 114-283 16-178 (180)
267 cd01850 CDC_Septin CDC/Septin. 99.5 1.6E-12 3.4E-17 124.8 17.5 127 116-245 5-162 (276)
268 COG5257 GCD11 Translation init 99.5 3.7E-13 8E-18 126.8 12.6 166 114-289 9-208 (415)
269 PLN00116 translation elongatio 99.5 3E-13 6.4E-18 148.1 13.9 115 114-239 18-163 (843)
270 PRK13768 GTPase; Provisional 99.5 7.8E-13 1.7E-17 125.4 14.6 121 164-286 98-250 (253)
271 PLN00023 GTP-binding protein; 99.5 1E-12 2.2E-17 126.9 14.9 122 111-241 17-166 (334)
272 cd01900 YchF YchF subfamily. 99.5 3.8E-13 8.3E-18 128.1 11.4 86 118-206 1-103 (274)
273 PTZ00416 elongation factor 2; 99.5 5.6E-13 1.2E-17 145.7 13.7 115 114-239 18-157 (836)
274 KOG0461 Selenocysteine-specifi 99.4 2.1E-12 4.5E-17 122.6 14.7 160 116-286 8-196 (522)
275 TIGR00991 3a0901s02IAP34 GTP-b 99.4 2.7E-12 5.8E-17 123.3 14.4 131 109-241 32-168 (313)
276 KOG0097 GTPase Rab14, small G 99.4 2.1E-12 4.6E-17 107.5 11.9 151 117-279 13-169 (215)
277 KOG0083 GTPase Rab26/Rab37, sm 99.4 1.1E-13 2.4E-18 114.1 3.5 154 120-284 2-161 (192)
278 COG4917 EutP Ethanolamine util 99.4 1.7E-12 3.7E-17 106.3 10.2 142 117-281 3-144 (148)
279 COG3276 SelB Selenocysteine-sp 99.4 4.6E-12 9.9E-17 124.6 14.3 156 117-283 2-162 (447)
280 KOG0072 GTP-binding ADP-ribosy 99.4 1.2E-12 2.7E-17 109.4 7.6 157 114-283 17-179 (182)
281 KOG0074 GTP-binding ADP-ribosy 99.4 3.1E-12 6.8E-17 106.7 9.8 160 113-284 15-180 (185)
282 KOG0410 Predicted GTP binding 99.4 2.2E-12 4.7E-17 121.8 9.8 158 114-283 177-341 (410)
283 KOG0393 Ras-related small GTPa 99.4 1.5E-12 3.2E-17 116.8 7.6 160 114-284 3-180 (198)
284 TIGR02836 spore_IV_A stage IV 99.4 5E-12 1.1E-16 124.1 11.5 163 117-283 19-237 (492)
285 PF04548 AIG1: AIG1 family; I 99.3 7.5E-12 1.6E-16 115.6 10.3 167 117-286 2-189 (212)
286 KOG0081 GTPase Rab27, small G 99.3 5.1E-12 1.1E-16 107.4 8.1 154 117-282 11-180 (219)
287 COG0050 TufB GTPases - transla 99.3 1.3E-10 2.7E-15 108.6 17.3 161 115-286 12-204 (394)
288 KOG0458 Elongation factor 1 al 99.3 4.3E-11 9.2E-16 121.0 15.0 204 114-341 176-441 (603)
289 KOG1486 GTP-binding protein DR 99.3 7.6E-12 1.7E-16 114.2 8.8 156 117-282 64-287 (364)
290 PF00350 Dynamin_N: Dynamin fa 99.3 2.4E-11 5.1E-16 107.5 11.5 112 118-236 1-168 (168)
291 smart00053 DYNc Dynamin, GTPas 99.3 3.8E-11 8.3E-16 112.3 13.3 125 114-241 25-207 (240)
292 KOG3883 Ras family small GTPas 99.3 5.8E-11 1.3E-15 100.5 12.9 162 114-283 8-175 (198)
293 KOG1532 GTPase XAB1, interacts 99.3 5.9E-12 1.3E-16 116.4 7.2 125 163-291 116-272 (366)
294 COG2895 CysN GTPases - Sulfate 99.3 2.1E-11 4.6E-16 116.4 10.8 148 116-273 7-193 (431)
295 TIGR00750 lao LAO/AO transport 99.3 7.6E-11 1.6E-15 114.7 13.8 152 114-283 33-238 (300)
296 cd01858 NGP_1 NGP-1. Autoanti 99.3 8.5E-12 1.8E-16 109.6 6.3 149 189-360 2-156 (157)
297 PF09439 SRPRB: Signal recogni 99.3 1.2E-11 2.6E-16 110.4 7.2 118 114-242 2-128 (181)
298 KOG0090 Signal recognition par 99.3 8.7E-11 1.9E-15 105.1 12.6 156 116-282 39-238 (238)
299 TIGR00073 hypB hydrogenase acc 99.2 1.4E-10 3.1E-15 106.6 14.0 151 114-282 21-206 (207)
300 COG0012 Predicted GTPase, prob 99.2 4.2E-11 9E-16 116.4 10.8 87 116-207 3-109 (372)
301 KOG1707 Predicted Ras related/ 99.2 8.3E-11 1.8E-15 118.8 12.3 162 112-283 6-175 (625)
302 KOG4252 GTP-binding protein [S 99.2 3.5E-12 7.5E-17 110.5 2.1 158 114-282 19-180 (246)
303 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 2.6E-10 5.7E-15 106.1 13.0 163 117-284 1-177 (232)
304 KOG0077 Vesicle coat complex C 99.2 7E-11 1.5E-15 101.5 7.8 155 114-281 19-191 (193)
305 KOG0464 Elongation factor G [T 99.2 4.6E-11 1E-15 115.8 7.4 119 110-239 32-167 (753)
306 PF03308 ArgK: ArgK protein; 99.2 4.5E-11 9.8E-16 111.1 7.0 149 114-282 28-229 (266)
307 TIGR00993 3a0901s04IAP86 chlor 99.2 3.7E-10 7.9E-15 117.0 13.9 125 115-240 118-250 (763)
308 PRK10463 hydrogenase nickel in 99.2 6.1E-11 1.3E-15 113.2 7.6 162 114-281 103-287 (290)
309 PF03029 ATP_bind_1: Conserved 99.2 1.6E-10 3.4E-15 108.5 10.1 115 164-281 92-235 (238)
310 KOG1673 Ras GTPases [General f 99.1 4.1E-10 8.9E-15 95.6 9.9 168 114-292 19-195 (205)
311 PF05049 IIGP: Interferon-indu 99.1 3.8E-10 8.2E-15 111.3 11.0 162 116-286 36-221 (376)
312 PF00735 Septin: Septin; Inte 99.1 2.3E-09 4.9E-14 103.1 15.5 133 116-251 5-167 (281)
313 COG1703 ArgK Putative periplas 99.1 1E-09 2.2E-14 103.5 12.3 156 110-283 46-254 (323)
314 KOG0467 Translation elongation 99.1 4.5E-10 9.7E-15 116.3 10.8 114 115-239 9-137 (887)
315 KOG2486 Predicted GTPase [Gene 99.1 3.2E-10 6.9E-15 105.4 8.5 168 109-282 130-315 (320)
316 cd01859 MJ1464 MJ1464. This f 99.1 1.6E-10 3.4E-15 101.4 6.2 92 189-284 6-97 (156)
317 KOG0096 GTPase Ran/TC4/GSP1 (n 99.1 2.5E-10 5.5E-15 100.1 7.0 160 115-286 10-172 (216)
318 KOG1487 GTP-binding protein DR 99.1 2.4E-10 5.1E-15 105.0 7.1 156 117-282 61-280 (358)
319 COG0378 HypB Ni2+-binding GTPa 99.1 2.2E-09 4.7E-14 95.5 13.0 147 116-282 14-200 (202)
320 KOG0468 U5 snRNP-specific prot 99.1 5.3E-10 1.2E-14 114.0 9.5 118 111-239 124-262 (971)
321 TIGR00101 ureG urease accessor 99.1 2.8E-09 6.1E-14 97.4 13.2 82 196-283 113-196 (199)
322 cd01855 YqeH YqeH. YqeH is an 99.0 5.1E-10 1.1E-14 101.5 7.2 95 185-283 24-125 (190)
323 KOG1547 Septin CDC10 and relat 99.0 3.1E-09 6.7E-14 96.7 11.9 133 116-251 47-209 (336)
324 cd01858 NGP_1 NGP-1. Autoanti 99.0 5.8E-10 1.3E-14 98.0 7.1 56 115-173 102-157 (157)
325 COG5258 GTPBP1 GTPase [General 99.0 5E-09 1.1E-13 101.3 13.5 160 114-284 116-339 (527)
326 cd04178 Nucleostemin_like Nucl 99.0 6.6E-10 1.4E-14 99.2 7.1 56 115-173 117-172 (172)
327 TIGR03596 GTPase_YlqF ribosome 99.0 5.6E-10 1.2E-14 107.3 6.7 157 185-361 11-173 (276)
328 KOG0460 Mitochondrial translat 99.0 2E-08 4.3E-13 95.8 16.2 160 115-285 54-247 (449)
329 cd01849 YlqF_related_GTPase Yl 99.0 4.2E-10 9E-15 98.7 4.3 147 197-360 1-154 (155)
330 KOG1143 Predicted translation 98.9 3.4E-09 7.3E-14 101.9 8.9 181 115-307 167-411 (591)
331 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 1.3E-09 2.8E-14 94.1 5.3 82 187-270 3-84 (141)
332 COG1161 Predicted GTPases [Gen 98.9 2.6E-09 5.5E-14 104.8 6.9 61 114-177 131-191 (322)
333 KOG1491 Predicted GTP-binding 98.9 9.6E-09 2.1E-13 98.1 10.5 89 114-207 19-126 (391)
334 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 4.2E-09 9.1E-14 90.8 6.9 55 117-174 85-139 (141)
335 COG5019 CDC3 Septin family pro 98.8 8.1E-08 1.8E-12 93.1 15.2 134 115-251 23-187 (373)
336 PRK09563 rbgA GTPase YlqF; Rev 98.8 4.2E-09 9E-14 101.8 6.3 155 186-360 15-175 (287)
337 cd01849 YlqF_related_GTPase Yl 98.8 6.5E-09 1.4E-13 91.1 6.7 57 114-173 99-155 (155)
338 KOG0466 Translation initiation 98.8 9.9E-09 2.1E-13 96.4 8.1 116 164-289 126-247 (466)
339 KOG1954 Endocytosis/signaling 98.8 4.8E-08 1.1E-12 94.1 12.7 131 114-246 57-231 (532)
340 cd01851 GBP Guanylate-binding 98.8 1.6E-08 3.5E-13 94.2 9.3 90 116-208 8-104 (224)
341 KOG4423 GTP-binding protein-li 98.8 7.2E-10 1.6E-14 97.0 -0.2 156 117-283 27-194 (229)
342 cd01856 YlqF YlqF. Proteins o 98.8 2.6E-08 5.7E-13 88.7 9.5 93 185-283 9-101 (171)
343 cd01855 YqeH YqeH. YqeH is an 98.8 7.2E-09 1.6E-13 93.9 5.7 56 115-173 127-190 (190)
344 PRK09563 rbgA GTPase YlqF; Rev 98.8 1.1E-08 2.5E-13 98.8 7.2 59 114-175 120-178 (287)
345 TIGR00092 GTP-binding protein 98.8 1.3E-08 2.7E-13 100.5 7.4 89 116-206 3-108 (368)
346 TIGR03596 GTPase_YlqF ribosome 98.8 1.9E-08 4E-13 96.8 8.2 59 114-175 117-175 (276)
347 KOG2655 Septin family protein 98.8 1.4E-07 3E-12 92.1 14.2 133 116-251 22-183 (366)
348 PRK12289 GTPase RsgA; Reviewed 98.7 1.6E-08 3.4E-13 100.1 6.4 85 191-280 85-172 (352)
349 TIGR03597 GTPase_YqeH ribosome 98.7 1.5E-08 3.3E-13 100.9 6.4 119 116-241 155-281 (360)
350 cd01856 YlqF YlqF. Proteins o 98.7 3.5E-08 7.5E-13 87.9 7.9 57 114-173 114-170 (171)
351 PF07650 KH_2: KH domain syndr 98.7 2.9E-08 6.2E-13 76.6 4.6 52 343-395 27-78 (78)
352 TIGR03597 GTPase_YqeH ribosome 98.6 1.4E-07 3.1E-12 94.0 9.8 92 187-282 55-152 (360)
353 PRK12289 GTPase RsgA; Reviewed 98.6 7.5E-08 1.6E-12 95.3 5.9 56 117-175 174-236 (352)
354 TIGR01425 SRP54_euk signal rec 98.6 1.5E-06 3.2E-11 87.8 15.2 119 115-240 100-253 (429)
355 KOG0463 GTP-binding protein GP 98.6 3.1E-07 6.8E-12 88.6 9.7 164 111-284 129-358 (641)
356 PRK12288 GTPase RsgA; Reviewed 98.5 1.3E-07 2.9E-12 93.4 7.0 56 117-175 207-269 (347)
357 PRK13796 GTPase YqeH; Provisio 98.5 1.3E-07 2.9E-12 94.3 6.8 57 116-175 161-222 (365)
358 cd01859 MJ1464 MJ1464. This f 98.5 2E-07 4.2E-12 81.6 7.0 56 115-173 101-156 (156)
359 cd03112 CobW_like The function 98.5 7.6E-07 1.6E-11 78.4 10.1 117 116-238 1-158 (158)
360 KOG3886 GTP-binding protein [S 98.5 2.8E-07 6.1E-12 83.7 7.0 122 116-241 5-131 (295)
361 KOG0448 Mitofusin 1 GTPase, in 98.5 1.5E-06 3.2E-11 89.9 12.9 145 114-267 108-310 (749)
362 cd04178 Nucleostemin_like Nucl 98.5 2.4E-07 5.3E-12 82.6 6.3 56 197-254 1-58 (172)
363 PRK13796 GTPase YqeH; Provisio 98.5 5.4E-07 1.2E-11 90.0 9.3 91 189-283 62-159 (365)
364 COG5192 BMS1 GTP-binding prote 98.5 1.5E-06 3.2E-11 87.9 11.9 135 114-267 68-210 (1077)
365 TIGR00157 ribosome small subun 98.5 2.4E-07 5.1E-12 87.5 6.1 56 116-175 121-183 (245)
366 TIGR00157 ribosome small subun 98.5 6.8E-07 1.5E-11 84.4 9.1 84 192-280 33-120 (245)
367 KOG2423 Nucleolar GTPase [Gene 98.4 5.8E-08 1.3E-12 94.2 1.3 64 111-177 303-366 (572)
368 KOG0469 Elongation factor 2 [T 98.4 2.9E-07 6.2E-12 91.8 5.4 112 117-239 21-163 (842)
369 PRK10416 signal recognition pa 98.4 9.8E-06 2.1E-10 79.4 14.5 149 115-275 114-302 (318)
370 PF03193 DUF258: Protein of un 98.3 3.9E-07 8.5E-12 79.9 4.2 57 116-175 36-99 (161)
371 PRK12288 GTPase RsgA; Reviewed 98.3 9.1E-07 2E-11 87.6 7.0 84 193-281 118-206 (347)
372 KOG0459 Polypeptide release fa 98.3 1.3E-06 2.8E-11 85.3 7.5 155 112-276 76-279 (501)
373 PRK00098 GTPase RsgA; Reviewed 98.3 2.7E-06 5.8E-11 82.7 8.9 82 193-279 78-163 (298)
374 PRK01889 GTPase RsgA; Reviewed 98.3 2.5E-06 5.4E-11 85.0 8.7 83 193-279 110-193 (356)
375 COG1162 Predicted GTPases [Gen 98.3 1.2E-06 2.6E-11 83.7 6.1 59 115-176 164-229 (301)
376 cd01854 YjeQ_engC YjeQ/EngC. 98.3 3.5E-06 7.5E-11 81.5 8.8 83 193-280 76-161 (287)
377 TIGR00064 ftsY signal recognit 98.2 3.3E-05 7.2E-10 74.0 15.2 149 115-275 72-260 (272)
378 KOG2484 GTPase [General functi 98.2 5.2E-07 1.1E-11 88.1 2.2 62 113-177 250-311 (435)
379 PRK00098 GTPase RsgA; Reviewed 98.2 1.8E-06 3.8E-11 84.0 5.9 57 116-175 165-228 (298)
380 COG0523 Putative GTPases (G3E 98.2 1.4E-05 3E-10 78.2 11.7 155 116-277 2-195 (323)
381 cd01854 YjeQ_engC YjeQ/EngC. 98.2 5.2E-06 1.1E-10 80.3 8.0 57 116-175 162-225 (287)
382 PRK14974 cell division protein 98.1 4.1E-05 8.8E-10 75.4 13.9 149 114-275 139-322 (336)
383 KOG2485 Conserved ATP/GTP bind 98.1 6E-06 1.3E-10 78.6 6.9 62 115-176 143-209 (335)
384 PRK14722 flhF flagellar biosyn 98.1 2.4E-05 5.2E-10 77.9 11.0 124 114-240 136-295 (374)
385 PF02492 cobW: CobW/HypB/UreG, 98.1 3.7E-05 7.9E-10 69.0 10.8 137 116-261 1-177 (178)
386 KOG3905 Dynein light intermedi 98.1 0.00011 2.3E-09 70.4 14.0 58 225-283 221-290 (473)
387 smart00010 small_GTPase Small 98.0 9.6E-06 2.1E-10 67.3 5.7 113 117-272 2-115 (124)
388 cd03115 SRP The signal recogni 97.9 0.00027 5.7E-09 62.8 13.1 72 162-240 82-153 (173)
389 KOG3859 Septins (P-loop GTPase 97.9 5.4E-05 1.2E-09 70.8 8.6 130 115-247 42-197 (406)
390 COG1161 Predicted GTPases [Gen 97.9 2.1E-05 4.5E-10 77.3 6.3 148 186-360 25-186 (322)
391 KOG1707 Predicted Ras related/ 97.9 0.00017 3.7E-09 73.8 12.3 156 114-284 424-584 (625)
392 PRK00771 signal recognition pa 97.9 4.9E-05 1.1E-09 77.4 8.5 119 114-240 94-246 (437)
393 cd03114 ArgK-like The function 97.8 8.9E-05 1.9E-09 64.5 8.9 58 162-237 91-148 (148)
394 PRK12727 flagellar biosynthesi 97.8 0.00018 3.9E-09 74.2 12.3 144 114-271 349-523 (559)
395 PRK11537 putative GTP-binding 97.8 0.00011 2.3E-09 72.1 10.3 142 115-264 4-186 (318)
396 TIGR02475 CobW cobalamin biosy 97.8 0.00019 4.2E-09 71.0 11.9 155 114-276 3-223 (341)
397 PF00448 SRP54: SRP54-type pro 97.8 0.00016 3.4E-09 66.0 10.4 117 117-240 3-154 (196)
398 KOG0447 Dynamin-like GTP bindi 97.8 0.00031 6.8E-09 71.2 13.0 75 164-240 413-493 (980)
399 PRK11889 flhF flagellar biosyn 97.8 6.3E-05 1.4E-09 74.8 8.1 119 115-240 241-391 (436)
400 PF05783 DLIC: Dynein light in 97.8 0.00036 7.8E-09 71.7 13.6 61 226-287 196-268 (472)
401 COG3640 CooC CO dehydrogenase 97.7 8.4E-05 1.8E-09 68.3 7.3 46 192-239 152-198 (255)
402 PRK12724 flagellar biosynthesi 97.7 0.00036 7.8E-09 70.2 11.6 120 115-240 223-373 (432)
403 PRK12726 flagellar biosynthesi 97.6 0.00048 1E-08 68.4 11.5 120 114-240 205-356 (407)
404 PRK14721 flhF flagellar biosyn 97.6 0.00016 3.5E-09 73.1 8.2 145 114-271 190-365 (420)
405 cd02038 FleN-like FleN is a me 97.6 0.00088 1.9E-08 57.5 11.4 100 120-239 5-110 (139)
406 COG1618 Predicted nucleotide k 97.6 0.0027 5.9E-08 55.3 14.1 152 116-283 6-176 (179)
407 PRK12723 flagellar biosynthesi 97.6 0.00063 1.4E-08 68.3 11.8 121 114-240 173-326 (388)
408 KOG2743 Cobalamin synthesis pr 97.6 0.00028 6E-09 66.9 8.5 148 109-260 51-245 (391)
409 PRK06995 flhF flagellar biosyn 97.6 0.00044 9.6E-09 71.1 10.7 148 114-274 255-434 (484)
410 PRK10867 signal recognition pa 97.6 0.0011 2.4E-08 67.5 13.4 118 115-239 100-253 (433)
411 PRK13695 putative NTPase; Prov 97.5 0.0033 7.1E-08 55.9 14.5 87 181-282 82-172 (174)
412 TIGR03348 VI_IcmF type VI secr 97.5 0.00028 6.1E-09 80.7 9.2 122 114-240 110-257 (1169)
413 KOG2484 GTPase [General functi 97.5 0.00045 9.8E-09 67.9 9.0 72 185-256 136-207 (435)
414 COG1419 FlhF Flagellar GTP-bin 97.5 0.00072 1.6E-08 67.3 10.3 23 114-136 202-224 (407)
415 KOG1534 Putative transcription 97.5 0.0003 6.6E-09 63.5 6.9 76 164-241 99-179 (273)
416 PRK05703 flhF flagellar biosyn 97.5 0.00036 7.9E-09 71.1 8.4 145 115-271 221-396 (424)
417 cd03111 CpaE_like This protein 97.5 0.001 2.2E-08 54.3 9.3 95 118-235 2-106 (106)
418 cd03110 Fer4_NifH_child This p 97.4 0.0013 2.7E-08 58.8 10.4 67 161-240 91-157 (179)
419 TIGR00959 ffh signal recogniti 97.4 0.0022 4.7E-08 65.3 13.3 71 162-239 182-252 (428)
420 PRK06731 flhF flagellar biosyn 97.4 0.00093 2E-08 63.9 10.0 119 115-240 75-225 (270)
421 KOG1533 Predicted GTPase [Gene 97.3 0.00023 5E-09 65.3 4.5 122 118-241 5-178 (290)
422 smart00275 G_alpha G protein a 97.3 0.002 4.3E-08 63.9 11.0 75 157-240 178-265 (342)
423 PF09547 Spore_IV_A: Stage IV 97.3 0.0049 1.1E-07 61.6 13.4 66 214-283 170-237 (492)
424 KOG2423 Nucleolar GTPase [Gene 97.2 0.0019 4.2E-08 63.4 9.8 98 185-283 203-300 (572)
425 KOG1424 Predicted GTP-binding 97.2 0.00083 1.8E-08 68.0 7.5 81 185-267 164-244 (562)
426 PRK01889 GTPase RsgA; Reviewed 97.2 0.00027 5.9E-09 70.4 3.9 55 117-174 197-258 (356)
427 PRK14723 flhF flagellar biosyn 97.2 0.0023 4.9E-08 69.1 10.5 122 115-240 185-337 (767)
428 PF06858 NOG1: Nucleolar GTP-b 97.1 0.0014 3E-08 46.8 5.7 45 193-237 11-58 (58)
429 cd02036 MinD Bacterial cell di 97.1 0.0042 9E-08 55.0 10.0 108 120-239 5-127 (179)
430 cd00066 G-alpha G protein alph 97.0 0.0015 3.3E-08 64.0 6.9 75 157-240 155-242 (317)
431 COG1162 Predicted GTPases [Gen 97.0 0.0042 9.1E-08 59.7 9.2 85 193-282 77-166 (301)
432 cd01983 Fer4_NifH The Fer4_Nif 96.9 0.0076 1.6E-07 47.0 9.2 71 118-209 2-72 (99)
433 cd02042 ParA ParA and ParB of 96.9 0.0066 1.4E-07 48.9 9.0 66 118-208 2-74 (104)
434 KOG0780 Signal recognition par 96.6 0.016 3.6E-07 57.0 9.9 93 114-209 100-227 (483)
435 PF08433 KTI12: Chromatin asso 96.5 0.041 9E-07 52.7 12.6 145 116-283 2-174 (270)
436 KOG3887 Predicted small GTPase 96.5 0.011 2.4E-07 54.6 7.9 116 116-241 28-150 (347)
437 COG3523 IcmF Type VI protein s 96.5 0.0033 7.1E-08 70.6 5.4 119 116-240 126-270 (1188)
438 PRK14737 gmk guanylate kinase; 96.5 0.0018 3.9E-08 58.5 2.8 52 115-168 4-55 (186)
439 PF00004 AAA: ATPase family as 96.4 0.0092 2E-07 49.7 6.8 21 118-138 1-21 (132)
440 PF13401 AAA_22: AAA domain; P 96.4 0.0038 8.2E-08 52.3 4.0 25 115-139 4-28 (131)
441 cd02037 MRP-like MRP (Multiple 96.4 0.023 4.9E-07 50.2 9.1 107 119-238 4-133 (169)
442 COG0552 FtsY Signal recognitio 96.4 0.006 1.3E-07 59.2 5.7 99 162-275 221-327 (340)
443 KOG0446 Vacuolar sorting prote 96.3 0.0022 4.8E-08 68.6 2.8 95 113-207 27-180 (657)
444 PF05621 TniB: Bacterial TniB 96.2 0.019 4.1E-07 55.3 8.1 113 110-235 56-189 (302)
445 KOG2485 Conserved ATP/GTP bind 96.2 0.012 2.5E-07 56.6 6.3 89 186-279 37-127 (335)
446 KOG2203 GTP-binding protein [G 96.2 0.0052 1.1E-07 62.7 4.1 91 111-201 33-126 (772)
447 PRK13849 putative crown gall t 96.1 0.034 7.4E-07 52.0 9.2 66 161-237 82-151 (231)
448 PRK14738 gmk guanylate kinase; 96.1 0.0043 9.4E-08 56.9 3.1 39 114-152 12-50 (206)
449 COG1116 TauB ABC-type nitrate/ 96.0 0.005 1.1E-07 57.5 3.2 24 116-139 30-53 (248)
450 PF13207 AAA_17: AAA domain; P 96.0 0.0056 1.2E-07 50.6 3.1 22 117-138 1-22 (121)
451 cd02032 Bchl_like This family 96.0 0.038 8.3E-07 52.6 9.2 66 163-238 116-184 (267)
452 cd00009 AAA The AAA+ (ATPases 96.0 0.044 9.6E-07 45.7 8.7 24 116-139 20-43 (151)
453 KOG0705 GTPase-activating prot 96.0 0.019 4.1E-07 58.8 7.1 151 116-281 31-187 (749)
454 PF13555 AAA_29: P-loop contai 96.0 0.007 1.5E-07 44.3 3.0 20 117-136 25-44 (62)
455 TIGR03263 guanyl_kin guanylate 95.9 0.0067 1.5E-07 54.0 3.5 54 117-172 3-56 (180)
456 COG0541 Ffh Signal recognition 95.9 0.048 1E-06 54.8 9.5 90 115-209 100-226 (451)
457 COG0194 Gmk Guanylate kinase [ 95.9 0.0044 9.4E-08 55.3 1.9 51 116-169 5-55 (191)
458 PHA02518 ParA-like protein; Pr 95.9 0.073 1.6E-06 48.4 10.2 35 162-207 76-110 (211)
459 cd00071 GMPK Guanosine monopho 95.8 0.0075 1.6E-07 51.6 3.1 52 118-171 2-54 (137)
460 PF07015 VirC1: VirC1 protein; 95.8 0.15 3.2E-06 47.4 11.7 100 162-276 83-187 (231)
461 PF00005 ABC_tran: ABC transpo 95.8 0.008 1.7E-07 50.8 3.3 25 116-140 12-36 (137)
462 COG0563 Adk Adenylate kinase a 95.8 0.004 8.7E-08 55.8 1.3 22 117-138 2-23 (178)
463 COG3840 ThiQ ABC-type thiamine 95.7 0.008 1.7E-07 53.6 2.8 24 116-139 26-49 (231)
464 PRK04195 replication factor C 95.7 0.14 3E-06 53.3 12.5 24 115-138 39-62 (482)
465 COG1136 SalX ABC-type antimicr 95.7 0.0085 1.8E-07 55.5 3.2 24 116-139 32-55 (226)
466 TIGR03574 selen_PSTK L-seryl-t 95.7 0.2 4.4E-06 47.1 12.6 20 118-137 2-21 (249)
467 COG1341 Predicted GTPase or GT 95.6 0.052 1.1E-06 54.1 8.3 23 114-136 72-94 (398)
468 PF05879 RHD3: Root hair defec 95.6 0.0083 1.8E-07 65.4 3.0 83 121-203 1-88 (742)
469 PRK00300 gmk guanylate kinase; 95.5 0.014 2.9E-07 53.2 3.9 24 116-139 6-29 (205)
470 PRK08233 hypothetical protein; 95.4 0.014 3E-07 51.9 3.3 25 114-138 2-26 (182)
471 cd02019 NK Nucleoside/nucleoti 95.4 0.014 3.1E-07 43.5 2.8 21 118-138 2-22 (69)
472 TIGR01968 minD_bact septum sit 95.3 0.16 3.5E-06 47.7 10.7 64 163-238 112-175 (261)
473 PRK07261 topology modulation p 95.3 0.013 2.8E-07 52.1 3.0 21 117-137 2-22 (171)
474 KOG0066 eIF2-interacting prote 95.3 0.11 2.3E-06 52.3 9.5 23 117-139 615-637 (807)
475 PF03205 MobB: Molybdopterin g 95.3 0.014 3.1E-07 50.1 3.1 23 116-138 1-23 (140)
476 PF02263 GBP: Guanylate-bindin 95.3 0.024 5.2E-07 54.0 5.0 59 117-175 23-86 (260)
477 TIGR01969 minD_arch cell divis 95.3 0.18 3.9E-06 47.1 10.9 64 163-239 109-173 (251)
478 PRK10751 molybdopterin-guanine 95.3 0.016 3.5E-07 51.5 3.4 25 114-138 5-29 (173)
479 PF01656 CbiA: CobQ/CobB/MinD/ 95.3 0.014 3.1E-07 52.2 3.2 73 163-246 95-168 (195)
480 PF13521 AAA_28: AAA domain; P 95.2 0.011 2.3E-07 51.9 2.1 22 117-138 1-22 (163)
481 PRK05480 uridine/cytidine kina 95.2 0.017 3.6E-07 52.9 3.3 25 114-138 5-29 (209)
482 TIGR00235 udk uridine kinase. 95.2 0.015 3.3E-07 53.2 3.0 25 114-138 5-29 (207)
483 CHL00072 chlL photochlorophyll 95.2 0.077 1.7E-06 51.4 8.0 19 117-135 2-20 (290)
484 PRK08181 transposase; Validate 95.2 0.031 6.8E-07 53.5 5.1 22 116-137 107-128 (269)
485 PF13671 AAA_33: AAA domain; P 95.1 0.017 3.6E-07 49.1 2.9 20 118-137 2-21 (143)
486 smart00382 AAA ATPases associa 95.1 0.02 4.3E-07 47.3 3.3 25 116-140 3-27 (148)
487 cd01120 RecA-like_NTPases RecA 95.1 0.072 1.6E-06 45.7 7.0 21 118-138 2-22 (165)
488 cd02117 NifH_like This family 95.1 0.14 3E-06 47.0 9.2 19 117-135 2-20 (212)
489 PRK08118 topology modulation p 95.1 0.018 3.8E-07 51.1 3.0 22 117-138 3-24 (167)
490 TIGR01360 aden_kin_iso1 adenyl 95.0 0.019 4.2E-07 51.2 3.2 24 114-137 2-25 (188)
491 PF05729 NACHT: NACHT domain 95.0 0.071 1.5E-06 46.1 6.8 22 117-138 2-23 (166)
492 cd03225 ABC_cobalt_CbiO_domain 95.0 0.019 4.1E-07 52.6 3.2 24 116-139 28-51 (211)
493 PF13238 AAA_18: AAA domain; P 95.0 0.019 4.1E-07 47.6 2.9 21 118-138 1-21 (129)
494 cd03222 ABC_RNaseL_inhibitor T 95.0 0.018 4E-07 51.5 2.9 24 116-139 26-49 (177)
495 cd03261 ABC_Org_Solvent_Resist 95.0 0.019 4.2E-07 53.5 3.2 24 116-139 27-50 (235)
496 TIGR00960 3a0501s02 Type II (G 94.9 0.02 4.4E-07 52.6 3.2 24 116-139 30-53 (216)
497 TIGR01166 cbiO cobalt transpor 94.9 0.021 4.5E-07 51.4 3.2 23 117-139 20-42 (190)
498 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.9 0.021 4.5E-07 52.6 3.2 24 116-139 31-54 (218)
499 KOG4181 Uncharacterized conser 94.9 0.046 1E-06 53.2 5.4 23 117-139 190-212 (491)
500 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.9 0.023 5E-07 49.0 3.1 23 117-139 28-50 (144)
No 1
>COG1159 Era GTPase [General function prediction only]
Probab=100.00 E-value=4.7e-71 Score=514.68 Aligned_cols=295 Identities=45% Similarity=0.697 Sum_probs=282.0
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015092 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 111 ~~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
+.++++.|||+|+||||||||+|+|+|.+.+++|++++|||+.+.++++.++.|+.|+||||++ .+.+.+...|++.++
T Consensus 2 ~~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih-~pk~~l~~~m~~~a~ 80 (298)
T COG1159 2 MKFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIH-KPKHALGELMNKAAR 80 (298)
T ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCC-CcchHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999999999999999999999995 568899999999999
Q ss_pred hhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhh-HHHHHHHHHhcCCCccEEEcccCCCC
Q 015092 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
.++..+|+++||+|+.+++...++++++.++. .+.|+++++||+|+..+.. +....+.+.....|..++++||++|.
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~ 158 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD 158 (298)
T ss_pred HHhccCcEEEEEEeccccCCccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence 99999999999999999999999999998877 6789999999999987766 56777788888889999999999999
Q ss_pred CHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCCeeEEEEEEEEeeC
Q 015092 270 GVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKN 349 (413)
Q Consensus 270 gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~~v~v~~~~~~~~~~~~i~~~~~~~r~ 349 (413)
|++.|++.+..++|+++|+||.+++|++|.+|+++|++||+++..+++|+||++.|.+..++.++++.+.|.+.|+|+|+
T Consensus 159 n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a~I~Ver~ 238 (298)
T COG1159 159 NVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHATIYVERE 238 (298)
T ss_pred CHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999987789999999999999
Q ss_pred CcceEEeecCChHHHHHHHHHHHHHHHHhCCcEEEEEEEEeCCCcccCHHHHhhcCCcc
Q 015092 350 SQKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKHYGYGG 408 (413)
Q Consensus 350 ~~~~i~iG~~g~~ik~i~~~a~~~l~~~~~~~v~l~l~vkv~~~w~~~~~~l~~~g~~~ 408 (413)
|||.|+||++|++||+|+..||++||++|+++|||+|||||+++||+++..|++|||..
T Consensus 239 sQK~IiIGk~G~~iK~IG~~AR~~ie~l~~~kV~L~L~VKVk~~W~~~~~~l~~lgy~~ 297 (298)
T COG1159 239 SQKGIIIGKNGAMIKKIGTAARKDIEKLLGCKVYLELWVKVKKNWRDDEEALRELGYED 297 (298)
T ss_pred CccceEECCCcHHHHHHHHHHHHHHHHHhCCceEEEEEEEEccccccCHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999975
No 2
>PRK15494 era GTPase Era; Provisional
Probab=100.00 E-value=1.2e-60 Score=470.05 Aligned_cols=289 Identities=31% Similarity=0.496 Sum_probs=259.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
.++++|+++|+||||||||+|+|++.+++++++.++||++...+++..++.++.||||||+. ..+..+...+.+.+..+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~-~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIF-EPKGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcC-CCcccHHHHHHHHHHHH
Confidence 36679999999999999999999999999899999999999888888899999999999974 34555667777778888
Q ss_pred cccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHH
Q 015092 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~ 272 (413)
+..||++|||+|+..++......++..++. .+.|.++|+||+|+... ......+.+.....+.++|++||++|.|++
T Consensus 129 l~~aDvil~VvD~~~s~~~~~~~il~~l~~--~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~~~~~i~~iSAktg~gv~ 205 (339)
T PRK15494 129 LHSADLVLLIIDSLKSFDDITHNILDKLRS--LNIVPIFLLNKIDIESK-YLNDIKAFLTENHPDSLLFPISALSGKNID 205 (339)
T ss_pred hhhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEEhhcCccc-cHHHHHHHHHhcCCCcEEEEEeccCccCHH
Confidence 999999999999988877776666666655 56788999999998653 334444555444445689999999999999
Q ss_pred HHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCCeeEEEEEEEEeeCCcc
Q 015092 273 DIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQK 352 (413)
Q Consensus 273 ~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~~v~v~~~~~~~~~~~~i~~~~~~~r~~~~ 352 (413)
+|+++|.+.++++||.||.+++|+++.+++++|+|||++|.++++|+||++.|.++.|++++++.++|.+.|+|+|+|||
T Consensus 206 eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~~i~v~~~sqk 285 (339)
T PRK15494 206 GLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIVVSRESYK 285 (339)
T ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEEEEEECCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999987667889999999999999
Q ss_pred eEEeecCChHHHHHHHHHHHHHHHHhCCcEEEEEEEEeCCCcccCHHHHhhcC
Q 015092 353 IILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKHYG 405 (413)
Q Consensus 353 ~i~iG~~g~~ik~i~~~a~~~l~~~~~~~v~l~l~vkv~~~w~~~~~~l~~~g 405 (413)
.|+||++|++||+|+..||++||++|+++|||+|||||+++||+++..|++|.
T Consensus 286 ~iiiG~~g~~ik~i~~~ar~~le~~~~~~v~l~l~Vkv~~~w~~~~~~l~~~~ 338 (339)
T PRK15494 286 TIILGKNGSKIKEIGAKSRMQMERFFGFPVHLFLFVKVRELWENNQEFYQYMK 338 (339)
T ss_pred eEEEcCCcHHHHHHHHHHHHHHHHHhCCCeEEEEEEEECCCcccCHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999884
No 3
>PRK00089 era GTPase Era; Reviewed
Probab=100.00 E-value=2.3e-59 Score=453.49 Aligned_cols=290 Identities=46% Similarity=0.713 Sum_probs=264.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015092 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
.+|++.|+++|+||||||||+|+|++.+.+++++.++||+....++...++.++.++||||+.. ....+...+...+..
T Consensus 2 ~~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~-~~~~l~~~~~~~~~~ 80 (292)
T PRK00089 2 GFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHK-PKRALNRAMNKAAWS 80 (292)
T ss_pred CceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCC-chhHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999888778999999999854 445566677778888
Q ss_pred hcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCC-ChhhHHHHHHHHHhcCCCccEEEcccCCCCC
Q 015092 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~-~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
++..+|++++|+|++++.......+...++. .+.|+++|+||+|+. ...........+....++.+++++||++|.|
T Consensus 81 ~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 81 SLKDVDLVLFVVDADEKIGPGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred HHhcCCEEEEEEeCCCCCChhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 8999999999999998776666777776665 578999999999998 4455555666666655678899999999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCCeeEEEEEEEEeeCC
Q 015092 271 VEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNS 350 (413)
Q Consensus 271 v~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~~v~v~~~~~~~~~~~~i~~~~~~~r~~ 350 (413)
+++|+++|.+.+++++|.||.++.++.+.+++++|++||+++.++++|+||++.|.++.|+++ +.++|.+.++|+|++
T Consensus 159 v~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~~--~~~~i~~~i~v~~~~ 236 (292)
T PRK00089 159 VDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEIEKFEER--GLVRIEATIYVERDS 236 (292)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEEEEC--CeEEEEEEEEEccCC
Confidence 999999999999999999999999999999999999999999999999999999999999987 578899999999999
Q ss_pred cceEEeecCChHHHHHHHHHHHHHHHHhCCcEEEEEEEEeCCCcccCHHHHhhcCC
Q 015092 351 QKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKHYGY 406 (413)
Q Consensus 351 ~~~i~iG~~g~~ik~i~~~a~~~l~~~~~~~v~l~l~vkv~~~w~~~~~~l~~~g~ 406 (413)
|+.|+||++|++||+|+..||++||++|+|+|||+|||||+++||+++..|++|||
T Consensus 237 ~k~i~ig~~g~~i~~i~~~ar~~l~~~~~~~v~l~l~vkv~~~w~~~~~~~~~~g~ 292 (292)
T PRK00089 237 QKGIIIGKGGAMLKKIGTEARKDIEKLLGKKVFLELWVKVKKGWRDDEKALRELGY 292 (292)
T ss_pred ceeEEEeCCcHHHHHHHHHHHHHHHHHhCCCEEEEEEEEECCCccCCHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999998
No 4
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=100.00 E-value=7.6e-56 Score=424.04 Aligned_cols=270 Identities=40% Similarity=0.568 Sum_probs=241.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
++|+++|+||||||||+|+|++.+.+++++.++||++.+.++...++.++.||||||+.. ....+...+.+.+..++..
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~-~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHE-KKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCC-CcchHHHHHHHHHHHHHhh
Confidence 479999999999999999999999999999999999999998888888999999999854 3445666677778888999
Q ss_pred ccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHH
Q 015092 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (413)
Q Consensus 196 aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~ 275 (413)
+|++++|+|++...... ..+...++. .+.|+++|+||+|+............+.....+.+++++||++|.|+++|+
T Consensus 80 aDvvl~VvD~~~~~~~~-~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~ 156 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG-EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLA 156 (270)
T ss_pred CCEEEEEEECCCCCchH-HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHH
Confidence 99999999998765443 555555555 679999999999998655554444455444556689999999999999999
Q ss_pred HHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCCeeEEEEEEEEeeCCcceEE
Q 015092 276 DWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIIL 355 (413)
Q Consensus 276 ~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~~v~v~~~~~~~~~~~~i~~~~~~~r~~~~~i~ 355 (413)
++|.+.++++||.||.++.|+++.+++++|++||++|.++++|+||++.+.+..|++++++.++|.+.++|+|+|||.|+
T Consensus 157 ~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~i~~~i~v~~~s~k~ii 236 (270)
T TIGR00436 157 AFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHALISVERESQKKII 236 (270)
T ss_pred HHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEECCCCeEEEEEEEEECcCCceeEE
Confidence 99999999999999999999999999999999999999999999999999999999987667899999999999999999
Q ss_pred eecCChHHHHHHHHHHHHHHHHhCCcEEEEEEEE
Q 015092 356 IGKGGKALKLLATAARLDIEDFLQKKVYLEIEVK 389 (413)
Q Consensus 356 iG~~g~~ik~i~~~a~~~l~~~~~~~v~l~l~vk 389 (413)
||++|++||+|+.+||++||++|+|+|||+||||
T Consensus 237 ig~~g~~ik~i~~~ar~~l~~~~~~~v~l~l~vk 270 (270)
T TIGR00436 237 IGKNGSMIKAIGIAARKDILELFDCDVFLELFVK 270 (270)
T ss_pred EcCCcHHHHHHHHHHHHHHHHHhCCCEEEEEEEC
Confidence 9999999999999999999999999999999997
No 5
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-50 Score=375.28 Aligned_cols=278 Identities=46% Similarity=0.747 Sum_probs=241.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh---hhHHHHHHHHH
Q 015092 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI---HMLDSMMMKNV 189 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~---~~l~~~~~~~~ 189 (413)
.++..|+++|.||||||||.|.++|.++++++.+++||++.+.++++.+..|++|+||||+..... +.+...+.+..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 477899999999999999999999999999999999999999999999999999999999976433 33444456688
Q ss_pred HhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-----------------HHHHHHH
Q 015092 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-----------------KKLEWYE 252 (413)
Q Consensus 190 ~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-----------------~~~~~~~ 252 (413)
+.++..||++++|+|++..-......++..++.. ...|.|+|+||+|......+. +..+.+.
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~ 228 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFT 228 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhc
Confidence 9999999999999999864333334344433332 679999999999987543221 1111111
Q ss_pred h------------cCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCC
Q 015092 253 K------------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVP 320 (413)
Q Consensus 253 ~------------~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eip 320 (413)
. +..|..+|++||++|.||++|.++|...++++||.||.+..|+++.++++.|++||+++.++++|+|
T Consensus 229 ~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e~VReklLd~~pqEVP 308 (379)
T KOG1423|consen 229 DVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSESVREKLLDHLPQEVP 308 (379)
T ss_pred cCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHHHHHHHHHhhCccccC
Confidence 1 2346679999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEEEecCCCeeEEEEEEEEeeCCcceEEeecCChHHHHHHHHHHHHHHHHhCCcEEEEEEEEeC
Q 015092 321 YACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVKVK 391 (413)
Q Consensus 321 ys~~v~v~~~~~~~~~~~~i~~~~~~~r~~~~~i~iG~~g~~ik~i~~~a~~~l~~~~~~~v~l~l~vkv~ 391 (413)
|.+++++..|++++++.++|.+.+.|.+.+|+.++||++|..|++|+..|+.||+++|+++|+|+|.||++
T Consensus 309 Y~lq~~i~~w~e~~~g~l~I~~~v~~pK~s~~klliGkgG~ki~qI~~~a~~dL~~if~r~V~l~l~Vk~k 379 (379)
T KOG1423|consen 309 YNLQVRILSWKERPAGVLFIQVEVVCPKNSQKKLLIGKGGKKISQIGTRANEDLEDIFQRKVFLRLSVKLK 379 (379)
T ss_pred cceEEEEEEeeecCCcEEEEEEEEEcCCCcceeEEEcCCCccHHHHHHHHHHHHHHHhhceeeEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999975
No 6
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=4.4e-33 Score=273.58 Aligned_cols=225 Identities=32% Similarity=0.460 Sum_probs=186.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
+.|+|||+||||||||+|+|++++.++|++.||+||+++.+...+.+..+.++||+|+.....+.+...+.+++..++..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999996555567888999999999999
Q ss_pred ccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHH
Q 015092 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (413)
Q Consensus 196 aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~ 275 (413)
||++|||+|+..+..+.++.+.+.++. .++|+++|+||+|-...+. ...+.+. .++..++++||.+|.|+.+|+
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr~--~~kpviLvvNK~D~~~~e~--~~~efys--lG~g~~~~ISA~Hg~Gi~dLl 157 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILRR--SKKPVILVVNKIDNLKAEE--LAYEFYS--LGFGEPVPISAEHGRGIGDLL 157 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEEcccCchhhh--hHHHHHh--cCCCCceEeehhhccCHHHHH
Confidence 999999999999999999999999986 7899999999999874332 2223333 267789999999999999999
Q ss_pred HHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CC-CeeEEEEEEEEee
Q 015092 276 DWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PT-AKDFIQVEIVVEK 348 (413)
Q Consensus 276 ~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~~v~v~~~~~~------~~-~~~~i~~~~~~~r 348 (413)
+.+...+| .+...+.... ..+- ++--..+||+|+|+.+|-+.++++ +| |++.|. ..+++
T Consensus 158 d~v~~~l~-~~e~~~~~~~-~~~i----------kiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~--~~~e~ 223 (444)
T COG1160 158 DAVLELLP-PDEEEEEEEE-TDPI----------KIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSID--IEFER 223 (444)
T ss_pred HHHHhhcC-Cccccccccc-CCce----------EEEEEeCCCCCchHHHHHhccCceEEecCCCCcccccee--eeEEE
Confidence 99999997 3322211111 1111 222345999999999999988877 45 456665 55688
Q ss_pred CCcceEEeecCC
Q 015092 349 NSQKIILIGKGG 360 (413)
Q Consensus 349 ~~~~~i~iG~~g 360 (413)
+++++.+|++.|
T Consensus 224 ~~~~~~liDTAG 235 (444)
T COG1160 224 DGRKYVLIDTAG 235 (444)
T ss_pred CCeEEEEEECCC
Confidence 999999999999
No 7
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.96 E-value=1e-27 Score=239.35 Aligned_cols=193 Identities=23% Similarity=0.258 Sum_probs=149.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCe-eEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~-~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
.|+|||.||||||||+|+|++.+. .++++|+||+.+..+++...+. ++.|+||||+...... ...+...+...+..
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~--~~~Lg~~~l~~i~r 237 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASE--GAGLGIRFLKHLER 237 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccc--hhhHHHHHHHHHHh
Confidence 699999999999999999999875 6899999999999999987754 5999999998642211 11122233456789
Q ss_pred ccEEEEEeeCCCC----CchHHHHHHHHccccC---CCCCEEEEEecCCCCChhhHHHHHHHHHhcCCC-ccEEEcccCC
Q 015092 196 ADCIVVLVDACKA----PERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV-DEVIPVSAKY 267 (413)
Q Consensus 196 aD~vl~VvD~~~~----~~~~~~~l~~~l~~~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~-~~v~~iSA~~ 267 (413)
+|++++|+|++.. .......+.+.+.... .++|+++|+||+|+.....+......+....++ .+++++||++
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~t 317 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAAS 317 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 9999999998721 1122223333333211 368999999999998665554444444333233 3789999999
Q ss_pred CCCHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHH
Q 015092 268 GHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIF 312 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~ 312 (413)
+.|+++|++.|.+.+++.++.||.++.++++.+++++|++||++.
T Consensus 318 g~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiRE~~~ 362 (390)
T PRK12298 318 GLGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQLE 362 (390)
T ss_pred CcCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999995
No 8
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.94 E-value=2.3e-26 Score=226.79 Aligned_cols=162 Identities=32% Similarity=0.451 Sum_probs=139.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
..+|+|+|.||||||||+|+|++...++|++.|||||+.+...+..+|..+.++||+|+. +..+.++..+++.++..+.
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiR-et~d~VE~iGIeRs~~~i~ 295 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIR-ETDDVVERIGIERAKKAIE 295 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcc-cCccHHHHHHHHHHHHHHH
Confidence 448999999999999999999999999999999999999999999999999999999995 6778899999999999999
Q ss_pred cccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHH
Q 015092 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L 274 (413)
.||++|||+|++.+....+..+...+ ..++|+++|+||+|+..+...... +...-.+++.+||++|.|++.|
T Consensus 296 ~ADlvL~v~D~~~~~~~~d~~~~~~~---~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl~~L 367 (454)
T COG0486 296 EADLVLFVLDASQPLDKEDLALIELL---PKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGLDAL 367 (454)
T ss_pred hCCEEEEEEeCCCCCchhhHHHHHhc---ccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccCHHHH
Confidence 99999999999997666666665522 267999999999999876542221 1122236899999999999999
Q ss_pred HHHHHhhCCCC
Q 015092 275 RDWILTKLPLG 285 (413)
Q Consensus 275 ~~~l~~~l~~~ 285 (413)
.+.|.+.+...
T Consensus 368 ~~~i~~~~~~~ 378 (454)
T COG0486 368 REAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHhhc
Confidence 99999988755
No 9
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=2.3e-25 Score=193.99 Aligned_cols=155 Identities=34% Similarity=0.419 Sum_probs=113.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
+|+++|.||||||||+|+|+|.+. .+++.||+|.+...+.+..++.++.++||||+..-.....++.....+.. ....
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~-~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~-~~~~ 79 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ-KVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLL-SEKP 79 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE-EEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH-HTSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-eecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHh-hcCC
Confidence 799999999999999999999994 58999999999999999999999999999998654333334444333322 3689
Q ss_pred cEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHHH
Q 015092 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (413)
Q Consensus 197 D~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~ 276 (413)
|++++|+|+++. +.. ..+...+.. .++|+++|+||+|......+....+.+.+..+ .|++++||++|.|+++|++
T Consensus 80 D~ii~VvDa~~l-~r~-l~l~~ql~e--~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg-~pvi~~sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 80 DLIIVVVDATNL-ERN-LYLTLQLLE--LGIPVVVVLNKMDEAERKGIEIDAEKLSERLG-VPVIPVSARTGEGIDELKD 154 (156)
T ss_dssp SEEEEEEEGGGH-HHH-HHHHHHHHH--TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT-S-EEEEBTTTTBTHHHHHH
T ss_pred CEEEEECCCCCH-HHH-HHHHHHHHH--cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC-CCEEEEEeCCCcCHHHHHh
Confidence 999999999863 222 234344444 68999999999998755433222233333334 4899999999999999998
Q ss_pred HH
Q 015092 277 WI 278 (413)
Q Consensus 277 ~l 278 (413)
.|
T Consensus 155 ~I 156 (156)
T PF02421_consen 155 AI 156 (156)
T ss_dssp HH
T ss_pred hC
Confidence 75
No 10
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=8.6e-25 Score=224.93 Aligned_cols=224 Identities=25% Similarity=0.321 Sum_probs=164.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
++|+|+|.||||||||+|+|++...+.+.+.+++|++.....+.+.+..+.+|||||+.. ....+...+...+..++..
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~-~~~~~~~~~~~~~~~~~~~ 117 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEP-DAKGLQASVAEQAEVAMRT 117 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCC-cchhHHHHHHHHHHHHHHh
Confidence 589999999999999999999998888899999999999988888889999999999742 2334555666777788999
Q ss_pred ccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHH
Q 015092 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (413)
Q Consensus 196 aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~ 275 (413)
||++|||+|++++....+..+...++. .++|+++|+||+|+..... .....+. .++..++++||++|.|+++|+
T Consensus 118 aD~il~VvD~~~~~s~~~~~i~~~l~~--~~~piilV~NK~Dl~~~~~--~~~~~~~--~g~~~~~~iSA~~g~gi~eL~ 191 (472)
T PRK03003 118 ADAVLFVVDATVGATATDEAVARVLRR--SGKPVILAANKVDDERGEA--DAAALWS--LGLGEPHPVSALHGRGVGDLL 191 (472)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCCccch--hhHHHHh--cCCCCeEEEEcCCCCCcHHHH
Confidence 999999999998877666767777766 6899999999999864321 1112222 234456899999999999999
Q ss_pred HHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CCC-eeEEEEEEEEee
Q 015092 276 DWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTA-KDFIQVEIVVEK 348 (413)
Q Consensus 276 ~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~~v~v~~~~~~------~~~-~~~i~~~~~~~r 348 (413)
++|.+.++......+. ... .+ ++....++++|+++.++.+.+..+ +++ ...+. ..+..
T Consensus 192 ~~i~~~l~~~~~~~~~---~~~--------~~--kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~--~~~~~ 256 (472)
T PRK03003 192 DAVLAALPEVPRVGSA---SGG--------PR--RVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVD--SLIEL 256 (472)
T ss_pred HHHHhhcccccccccc---ccc--------ce--EEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcce--EEEEE
Confidence 9999988653221100 000 01 344456889999998776554432 332 23333 23345
Q ss_pred CCcceEEeecCCh
Q 015092 349 NSQKIILIGKGGK 361 (413)
Q Consensus 349 ~~~~~i~iG~~g~ 361 (413)
.++.+.++++.|.
T Consensus 257 ~~~~~~l~DTaG~ 269 (472)
T PRK03003 257 GGKTWRFVDTAGL 269 (472)
T ss_pred CCEEEEEEECCCc
Confidence 6777889999993
No 11
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.92 E-value=2.1e-24 Score=219.95 Aligned_cols=223 Identities=34% Similarity=0.424 Sum_probs=165.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
+|+|+|+||||||||+|+|++...+.+++.+++|++.....+.+++..+.+|||||+.. ....+...+...+..++..|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~-~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEE-DDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCC-cchhHHHHHHHHHHHHHhhC
Confidence 48999999999999999999999888999999999999988888899999999999843 33445666777888889999
Q ss_pred cEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHHH
Q 015092 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (413)
Q Consensus 197 D~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~ 276 (413)
|++++|+|+..+....+..+...++. .++|+++|+||+|+....... .+ +. ..++.+++++||++|.|+++|++
T Consensus 80 d~vl~vvD~~~~~~~~d~~i~~~l~~--~~~piilVvNK~D~~~~~~~~--~~-~~-~lg~~~~~~vSa~~g~gv~~ll~ 153 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDEEIAKWLRK--SGKPVILVANKIDGKKEDAVA--AE-FY-SLGFGEPIPISAEHGRGIGDLLD 153 (429)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHH--hCCCEEEEEECccCCcccccH--HH-HH-hcCCCCeEEEeCCcCCChHHHHH
Confidence 99999999999888888778887777 689999999999987543221 11 22 23566899999999999999999
Q ss_pred HHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEe------cCCCe-eEEEEEEEEeeC
Q 015092 277 WILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKT------RPTAK-DFIQVEIVVEKN 349 (413)
Q Consensus 277 ~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~~v~v~~~~~------~~~~~-~~i~~~~~~~r~ 349 (413)
.+...++......... ..+ + ++.-..++++|+++.++.+.+.. .+++. ..+ ...++..
T Consensus 154 ~i~~~l~~~~~~~~~~---~~~--------~--~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~--~~~~~~~ 218 (429)
T TIGR03594 154 AILELLPEEEEEEEEE---DGP--------I--KIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSI--DIPFERN 218 (429)
T ss_pred HHHHhcCccccccccc---CCc--------e--EEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcE--eEEEEEC
Confidence 9999886532111000 000 0 22334577778777776544332 13322 222 2334556
Q ss_pred CcceEEeecCCh
Q 015092 350 SQKIILIGKGGK 361 (413)
Q Consensus 350 ~~~~i~iG~~g~ 361 (413)
++.+.++++.|-
T Consensus 219 ~~~~~liDT~G~ 230 (429)
T TIGR03594 219 GKKYLLIDTAGI 230 (429)
T ss_pred CcEEEEEECCCc
Confidence 778999999993
No 12
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.91 E-value=1e-23 Score=207.61 Aligned_cols=207 Identities=22% Similarity=0.299 Sum_probs=157.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHHHHHHHHHHh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~l~~~~~~~~~~ 191 (413)
...+|||+|+||||||||+|+|++....++++.+||||+.+...+.+++..+.++||+|+..... ..++.+....+..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 45799999999999999999999999999999999999999999999999999999999854221 2223334456677
Q ss_pred hcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCCh--hhHHHH---HHHHHhcCCCccEEEcccC
Q 015092 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKK---LEWYEKFTDVDEVIPVSAK 266 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~--~~~~~~---~~~~~~~~~~~~v~~iSA~ 266 (413)
++..||++++|+|++.+...++..+..++.. .++++++|+||+|+... ...... +...-.+..+.+++++||+
T Consensus 257 aI~~a~vvllviDa~~~~~~qD~~ia~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~ 334 (444)
T COG1160 257 AIERADVVLLVIDATEGISEQDLRIAGLIEE--AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISAL 334 (444)
T ss_pred HHhhcCEEEEEEECCCCchHHHHHHHHHHHH--cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEec
Confidence 8899999999999999999999999988877 89999999999999764 222222 2223334567899999999
Q ss_pred CCCCHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEe
Q 015092 267 YGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKT 332 (413)
Q Consensus 267 ~g~gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~~v~v~~~~~ 332 (413)
+|.|+..|++.+......... +-..-.++..++..+..+ .|-+.|--.+++.-...
T Consensus 335 ~~~~i~~l~~~i~~~~~~~~~---------ri~Ts~LN~~l~~a~~~~-pP~~~~G~r~ki~Ya~q 390 (444)
T COG1160 335 TGQGLDKLFEAIKEIYECATR---------RISTSLLNRVLEDAVAKH-PPPVRYGRRLKIKYATQ 390 (444)
T ss_pred CCCChHHHHHHHHHHHHHhcc---------ccCHHHHHHHHHHHHHhC-CCCccCCceEEEEEEec
Confidence 999999999999876543221 112223555665555454 55555555555555443
No 13
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=6.3e-24 Score=215.55 Aligned_cols=221 Identities=19% Similarity=0.214 Sum_probs=159.1
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHhCCceee-----eeCCCCceEEEEEEE------------EeCCCeeEEEEeCC
Q 015092 109 SHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSI-----VTNKPQTTRHRILGI------------CSGPEYQMILYDTP 171 (413)
Q Consensus 109 ~~~~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~-----vs~~~~tt~~~~~~~------------~~~~~~~~~l~Dtp 171 (413)
....+|+|.|||+||.++|||.|+..|.+.+++. .+...|.|..+...+ ....-..+++||||
T Consensus 469 ~~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtp 548 (1064)
T KOG1144|consen 469 STENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTP 548 (1064)
T ss_pred cchhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCC
Confidence 3457899999999999999999999999988763 223333333332221 01222468999999
Q ss_pred CCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCCh------hhHH
Q 015092 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP------GEIA 245 (413)
Q Consensus 172 G~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~------~~~~ 245 (413)
| +++|.+++.++ ...||++|+|||+++|+++++...+++++. ++.|+|+++||+|++.. ..+.
T Consensus 549 g--hEsFtnlRsrg-------sslC~~aIlvvdImhGlepqtiESi~lLR~--rktpFivALNKiDRLYgwk~~p~~~i~ 617 (1064)
T KOG1144|consen 549 G--HESFTNLRSRG-------SSLCDLAILVVDIMHGLEPQTIESINLLRM--RKTPFIVALNKIDRLYGWKSCPNAPIV 617 (1064)
T ss_pred C--chhhhhhhhcc-------ccccceEEEEeehhccCCcchhHHHHHHHh--cCCCeEEeehhhhhhcccccCCCchHH
Confidence 9 67888887776 789999999999999999999999999999 89999999999998521 1111
Q ss_pred H-------------------HHHHHHh-------------cCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCc
Q 015092 246 K-------------------KLEWYEK-------------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDI 293 (413)
Q Consensus 246 ~-------------------~~~~~~~-------------~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~ 293 (413)
. +...+.. ...+..++|+||.+|+||.+|+-+|+++.+..
T Consensus 618 ~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~-------- 689 (1064)
T KOG1144|consen 618 EALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT-------- 689 (1064)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH--------
Confidence 1 1111111 22456889999999999999999999876421
Q ss_pred cCCchhhHHHHHHHHHHHHhhcCCCCCceeE--EEEEEEEecCC--CeeEEEEEEEEeeCCcceEEeecCChHHHHHHHH
Q 015092 294 VSEHPERFFVGEIIREKIFMQYRNEVPYACQ--VNVVSYKTRPT--AKDFIQVEIVVEKNSQKIILIGKGGKALKLLATA 369 (413)
Q Consensus 294 ~t~~~~~~~~~eiiReki~~~~~~eipys~~--v~v~~~~~~~~--~~~~i~~~~~~~r~~~~~i~iG~~g~~ik~i~~~ 369 (413)
.. +.+-|... ..|+..+..+| +++.+.......++|...++||.+|..+++|++.
T Consensus 690 ---------m~------------~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaL 748 (1064)
T KOG1144|consen 690 ---------MV------------EKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRAL 748 (1064)
T ss_pred ---------HH------------HHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCchhHHHHHh
Confidence 11 11223333 33444455555 4455555566789999999999999999999875
No 14
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.91 E-value=1e-23 Score=226.61 Aligned_cols=227 Identities=26% Similarity=0.362 Sum_probs=169.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
.++|+|+|+||||||||+|+|++.+..++++.+++|++.......+++..+.+|||||+.. ....+...+..++..++.
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~-~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA-DVEGIDSAIASQAQIAVS 353 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCC-CCccHHHHHHHHHHHHHH
Confidence 3589999999999999999999999888999999999999988888889999999999742 233466667778888899
Q ss_pred cccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHH
Q 015092 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L 274 (413)
.||++|||+|++.+....+..+...++. .++|+++|+||+|+...... ....+. .++..++++||++|.|+++|
T Consensus 354 ~aD~iL~VvDa~~~~~~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~~~--~~~~~~--lg~~~~~~iSA~~g~GI~eL 427 (712)
T PRK09518 354 LADAVVFVVDGQVGLTSTDERIVRMLRR--AGKPVVLAVNKIDDQASEYD--AAEFWK--LGLGEPYPISAMHGRGVGDL 427 (712)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECcccccchhh--HHHHHH--cCCCCeEEEECCCCCCchHH
Confidence 9999999999998887777777777776 78999999999998653221 122222 23446789999999999999
Q ss_pred HHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CCC-eeEEEEEEEEe
Q 015092 275 RDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTA-KDFIQVEIVVE 347 (413)
Q Consensus 275 ~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~~v~v~~~~~~------~~~-~~~i~~~~~~~ 347 (413)
+++|.+.++...... ...+.. . . -++.-..++++|+++.++.+.+..+ +++ ...+. ..+.
T Consensus 428 l~~i~~~l~~~~~~~--~a~~~~-~------~--~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~--~~~~ 494 (712)
T PRK09518 428 LDEALDSLKVAEKTS--GFLTPS-G------L--RRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVD--EIVE 494 (712)
T ss_pred HHHHHHhcccccccc--cccCCC-C------C--cEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcce--eEEE
Confidence 999999886532210 000000 0 0 1344556899999998876655432 332 33333 2344
Q ss_pred eCCcceEEeecCCh
Q 015092 348 KNSQKIILIGKGGK 361 (413)
Q Consensus 348 r~~~~~i~iG~~g~ 361 (413)
..++.+.++++.|-
T Consensus 495 ~~~~~~~liDTaG~ 508 (712)
T PRK09518 495 IDGEDWLFIDTAGI 508 (712)
T ss_pred ECCCEEEEEECCCc
Confidence 56778889999993
No 15
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.90 E-value=2.1e-22 Score=176.23 Aligned_cols=166 Identities=42% Similarity=0.613 Sum_probs=132.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
++++|+++|.+|+|||||+|+|++.....++..+.+++..........+..+.+|||||+.. ........+.......+
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~-~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHK-PKKKLGERMVKAAWSAL 80 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCc-chHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999887888888888888888777788999999999753 22233333445566678
Q ss_pred ccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCC-ChhhHHHHHHHHHhcCCCccEEEcccCCCCCHH
Q 015092 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~-~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~ 272 (413)
..+|++++|+|++++.......+.+.+.. .+.|+++|+||+|+. ....+......+....+..+++++|++++.|++
T Consensus 81 ~~~d~i~~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 158 (168)
T cd04163 81 KDVDLVLFVVDASEPIGEGDEFILELLKK--SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVD 158 (168)
T ss_pred HhCCEEEEEEECCCccCchHHHHHHHHHH--hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChH
Confidence 89999999999998755555556555554 578999999999998 455555556666665556789999999999999
Q ss_pred HHHHHHHhhC
Q 015092 273 DIRDWILTKL 282 (413)
Q Consensus 273 ~L~~~l~~~l 282 (413)
++++.|.+.+
T Consensus 159 ~l~~~l~~~~ 168 (168)
T cd04163 159 ELLEEIVKYL 168 (168)
T ss_pred HHHHHHHhhC
Confidence 9999997653
No 16
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=5.4e-23 Score=210.02 Aligned_cols=223 Identities=31% Similarity=0.394 Sum_probs=162.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
++|+|+|+||||||||+|+|++...+.+.+.+++|++.....+.+++..+.+|||||+.. ....+...+...+..++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~-~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEP-DDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCC-cchhHHHHHHHHHHHHHHh
Confidence 479999999999999999999999888899999999999888888889999999999854 2222445566667778899
Q ss_pred ccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHH
Q 015092 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (413)
Q Consensus 196 aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~ 275 (413)
+|++|+|+|++.+....+..+...++. .++|+++|+||+|+..... ...+ +.. .++..++++||++|.|+++|+
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~~--~~~piilv~NK~D~~~~~~--~~~~-~~~-lg~~~~~~iSa~~g~gv~~l~ 154 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILRK--SNKPVILVVNKVDGPDEEA--DAYE-FYS-LGLGEPYPISAEHGRGIGDLL 154 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCccchh--hHHH-HHh-cCCCCCEEEEeeCCCCHHHHH
Confidence 999999999998887777777777776 6899999999999754221 1112 222 244568999999999999999
Q ss_pred HHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEe------cCCC-eeEEEEEEEEee
Q 015092 276 DWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKT------RPTA-KDFIQVEIVVEK 348 (413)
Q Consensus 276 ~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~~v~v~~~~~------~~~~-~~~i~~~~~~~r 348 (413)
+.+....+....... .... + ++.-..++++|+|+.++.+.+.. .+++ ...+ ...+..
T Consensus 155 ~~I~~~~~~~~~~~~------~~~~------~--~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~--~~~~~~ 218 (435)
T PRK00093 155 DAILEELPEEEEEDE------EDEP------I--KIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSI--DTPFER 218 (435)
T ss_pred HHHHhhCCccccccc------cccc------e--EEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEE--EEEEEE
Confidence 999885433211000 0000 1 23344578888888876554432 2332 2223 344456
Q ss_pred CCcceEEeecCCh
Q 015092 349 NSQKIILIGKGGK 361 (413)
Q Consensus 349 ~~~~~i~iG~~g~ 361 (413)
.++.+.++++.|-
T Consensus 219 ~~~~~~lvDT~G~ 231 (435)
T PRK00093 219 DGQKYTLIDTAGI 231 (435)
T ss_pred CCeeEEEEECCCC
Confidence 7888999999993
No 17
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=1.3e-22 Score=176.79 Aligned_cols=157 Identities=36% Similarity=0.476 Sum_probs=122.9
Q ss_pred EEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccE
Q 015092 119 AVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 198 (413)
Q Consensus 119 ~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ 198 (413)
+++|++|||||||+|+|++.....++..+++|+..........+..+.+|||||+..... .+...+...+...+..+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~-~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE-GISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh-HHHHHHHHHHHHHHHhCCE
Confidence 578999999999999999988777788899998887777777889999999999754322 3444455566667889999
Q ss_pred EEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHHHHH
Q 015092 199 IVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278 (413)
Q Consensus 199 vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~~l 278 (413)
+++|+|+.++.......+...++. .+.|+++|+||+|+....... ..+.. .+..+++++||++|.|+++++++|
T Consensus 80 ii~v~d~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~~---~~~~~-~~~~~~~~~Sa~~~~gv~~l~~~l 153 (157)
T cd01894 80 ILFVVDGREGLTPADEEIAKYLRK--SKKPVILVVNKVDNIKEEDEA---AEFYS-LGFGEPIPISAEHGRGIGDLLDAI 153 (157)
T ss_pred EEEEEeccccCCccHHHHHHHHHh--cCCCEEEEEECcccCChHHHH---HHHHh-cCCCCeEEEecccCCCHHHHHHHH
Confidence 999999988765555566666665 579999999999998654431 22222 234478999999999999999999
Q ss_pred HhhC
Q 015092 279 LTKL 282 (413)
Q Consensus 279 ~~~l 282 (413)
.+.+
T Consensus 154 ~~~~ 157 (157)
T cd01894 154 LELL 157 (157)
T ss_pred HhhC
Confidence 8753
No 18
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.89 E-value=5.3e-22 Score=175.59 Aligned_cols=163 Identities=23% Similarity=0.355 Sum_probs=110.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHH-HHHHhhcc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMM-KNVRSAGI 194 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~-~~~~~~~~ 194 (413)
|+|+++|++|||||||+|+|++.... ++..+++|..........++.++.+|||||+.+..... ...+. ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEE-RNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-cCCCCCcccceeEEEEccCceEEEEEECCCcCCccccC-CchHHHHHHHHHHh
Confidence 47999999999999999999998764 45667778777776667777899999999974311100 00010 11111123
Q ss_pred cccEEEEEeeCCCCCc---hHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCH
Q 015092 195 NADCIVVLVDACKAPE---RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~---~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv 271 (413)
.+|++|+|+|+++... .....+...++....+.|+++|+||+|+.....+.. ...+... ...+++++||++|.|+
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~-~~~~~~~-~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE-IEEEEEL-EGEEVLKISTLTEEGV 156 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH-HHHhhhh-ccCceEEEEecccCCH
Confidence 4689999999986532 111223333433213799999999999976555443 2222222 3457999999999999
Q ss_pred HHHHHHHHhhC
Q 015092 272 EDIRDWILTKL 282 (413)
Q Consensus 272 ~~L~~~l~~~l 282 (413)
++++++|.+.+
T Consensus 157 ~~l~~~l~~~~ 167 (168)
T cd01897 157 DEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 19
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=3.8e-21 Score=197.97 Aligned_cols=169 Identities=24% Similarity=0.235 Sum_probs=126.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHH-HHH-HHHHHh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLD-SMM-MKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~-~~~-~~~~~~ 191 (413)
...+|+++|+||||||||+|+|++.....+++.+++|++.....+..++..+.+|||||+......... ..+ .-....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 457999999999999999999999988778999999999888888788889999999997432111111 111 112334
Q ss_pred hcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHH---hcCCCccEEEcccCCC
Q 015092 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSAKYG 268 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~v~~iSA~~g 268 (413)
++..||++|+|+|++.+....+..++..+.. .++|+|+|+||+|+............+. ....+.+++++||++|
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g 367 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQRVLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTG 367 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCC
Confidence 5789999999999998877666656655555 6899999999999975432221111121 1223468999999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 015092 269 HGVEDIRDWILTKLPL 284 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~~ 284 (413)
.|+++++..+.+.+..
T Consensus 368 ~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 368 RAVDKLVPALETALES 383 (472)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987753
No 20
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=6.5e-21 Score=194.67 Aligned_cols=168 Identities=25% Similarity=0.319 Sum_probs=132.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHHHHHHHHHHh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~l~~~~~~~~~~ 191 (413)
...+|+++|+||+|||||+|+|++.....+++.+++|++.+...+..++..+.+|||||+..... ..++.........
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 45699999999999999999999999888999999999998888878888999999999743221 1233333445566
Q ss_pred hcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCccEEEcccCCC
Q 015092 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYG 268 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~iSA~~g 268 (413)
++..||++|+|+|++.+...++..+...+.. .++|+++|+||+|+.+..........+.. .....+++++||++|
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~ 329 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDLRIAGLALE--AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTG 329 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCC
Confidence 7889999999999999888877777776655 67999999999999855433333333322 224568999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015092 269 HGVEDIRDWILTKLP 283 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~ 283 (413)
.|++++++.+.+...
T Consensus 330 ~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 330 QGVDKLLEAIDEAYE 344 (435)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999887653
No 21
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.88 E-value=1.8e-22 Score=205.91 Aligned_cols=157 Identities=31% Similarity=0.394 Sum_probs=124.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
..+|+++|+||||||||+|+|++....++++.+++|++.....+..++..+.+|||||+.+ ....++..........+.
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~-~~~~ie~~gi~~~~~~~~ 293 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE-TDDEVEKIGIERSREAIE 293 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCC-CccHHHHHHHHHHHHHHH
Confidence 3589999999999999999999998888899999999988888888889999999999843 333444444555667789
Q ss_pred cccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHH
Q 015092 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L 274 (413)
.+|++++|+|++++.......++.. . .+.|+++|+||+|+....... . ....+++++||++|.|+++|
T Consensus 294 ~aD~il~VvD~s~~~s~~~~~~l~~--~--~~~piiiV~NK~DL~~~~~~~-------~-~~~~~~i~iSAktg~GI~~L 361 (449)
T PRK05291 294 EADLVLLVLDASEPLTEEDDEILEE--L--KDKPVIVVLNKADLTGEIDLE-------E-ENGKPVIRISAKTGEGIDEL 361 (449)
T ss_pred hCCEEEEEecCCCCCChhHHHHHHh--c--CCCCcEEEEEhhhccccchhh-------h-ccCCceEEEEeeCCCCHHHH
Confidence 9999999999988764433333332 2 578999999999997543322 1 12347899999999999999
Q ss_pred HHHHHhhCCC
Q 015092 275 RDWILTKLPL 284 (413)
Q Consensus 275 ~~~l~~~l~~ 284 (413)
+++|.+.+..
T Consensus 362 ~~~L~~~l~~ 371 (449)
T PRK05291 362 REAIKELAFG 371 (449)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 22
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=2.2e-21 Score=171.33 Aligned_cols=165 Identities=25% Similarity=0.305 Sum_probs=121.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh--hhhHHHHHHHHHHhh
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMKNVRSA 192 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~--~~~l~~~~~~~~~~~ 192 (413)
..+|+++|++|+|||||+|+|++.......+.+++|+......+..++..+.+|||||+.+.. ...++..........
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 358999999999999999999998877778888888887777777777889999999974321 111222222334456
Q ss_pred cccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCCh--hhHHHHHHHHHhcC---CCccEEEcccCC
Q 015092 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWYEKFT---DVDEVIPVSAKY 267 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~--~~~~~~~~~~~~~~---~~~~v~~iSA~~ 267 (413)
+..+|++++|+|+.++.......+...+.. .+.|+++|+||+|+... .........+.... ...+++++||++
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLRIAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALT 159 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHHHHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccC
Confidence 789999999999988766555445544444 57899999999999765 33333334443322 236899999999
Q ss_pred CCCHHHHHHHHHhh
Q 015092 268 GHGVEDIRDWILTK 281 (413)
Q Consensus 268 g~gv~~L~~~l~~~ 281 (413)
|.|++++++++.+.
T Consensus 160 ~~~i~~~~~~l~~~ 173 (174)
T cd01895 160 GQGVDKLFDAIDEV 173 (174)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999998754
No 23
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.88 E-value=1.2e-21 Score=193.71 Aligned_cols=158 Identities=28% Similarity=0.330 Sum_probs=115.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeC-CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
++|+++|+||||||||+|+|++.. ..+++.+++|++.....+.. ++..+.+|||||+.......+.+.+ +.+...+.
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f-~~tle~~~ 267 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAF-RATLEEVR 267 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHH-HHHHHHHH
Confidence 689999999999999999999988 45788999999887777766 5689999999998443223333333 33455688
Q ss_pred cccEEEEEeeCCCCCchHH-HHHHHHccccC-CCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHH
Q 015092 195 NADCIVVLVDACKAPERID-EILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~~~~-~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~ 272 (413)
.||++|+|+|++++..... ..+...++... .++|+++|+||+|+.....+.. ... ...+++++||++|.|++
T Consensus 268 ~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~----~~~--~~~~~i~iSAktg~GI~ 341 (351)
T TIGR03156 268 EADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIER----LEE--GYPEAVFVSAKTGEGLD 341 (351)
T ss_pred hCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHH----HHh--CCCCEEEEEccCCCCHH
Confidence 9999999999987653322 12222232221 4789999999999976433321 111 22468999999999999
Q ss_pred HHHHHHHhh
Q 015092 273 DIRDWILTK 281 (413)
Q Consensus 273 ~L~~~l~~~ 281 (413)
+|+++|.+.
T Consensus 342 eL~~~I~~~ 350 (351)
T TIGR03156 342 LLLEAIAER 350 (351)
T ss_pred HHHHHHHhh
Confidence 999999764
No 24
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=1.4e-21 Score=199.24 Aligned_cols=168 Identities=26% Similarity=0.294 Sum_probs=131.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHHHHHHHHHHh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~l~~~~~~~~~~ 191 (413)
...+|+++|++|+|||||+|+|++.....+++.++||++.....+..++..+.+|||||+..... ..++.........
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 34689999999999999999999999888899999999988888877888999999999743221 1233333345566
Q ss_pred hcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCC-ChhhHHHHHHHHHhc---CCCccEEEcccCC
Q 015092 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~-~~~~~~~~~~~~~~~---~~~~~v~~iSA~~ 267 (413)
++..||++|+|+|++++....+..++..+.. .++|+++|+||+|+. +..........+... ....+++++||++
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~ 328 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDLRIAGLILE--AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALT 328 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHHHHHHHHHH--cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCC
Confidence 7899999999999999888777777766655 689999999999998 433333333333322 2356899999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 015092 268 GHGVEDIRDWILTKLP 283 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~ 283 (413)
|.|++++++++.+...
T Consensus 329 g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 329 GQGVDKLLDAIDEVYE 344 (429)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988664
No 25
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.88 E-value=7.4e-22 Score=174.89 Aligned_cols=163 Identities=25% Similarity=0.263 Sum_probs=112.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCe-eEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~-~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
.|+++|++|||||||+|+|.+... .++..+++|.....+.+..++. .+.+|||||+...... ...+...+...+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--~~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASE--GKGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccc--cCCchHHHHHHHHh
Confidence 589999999999999999998765 4677788888777777776666 9999999997421111 01122333444568
Q ss_pred ccEEEEEeeCCCCC---chHHHHHHHHcccc--CCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCC
Q 015092 196 ADCIVVLVDACKAP---ERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 196 aD~vl~VvD~~~~~---~~~~~~l~~~l~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
||++++|+|++++. .....+...+.... ..++|+++|+||+|+.+..........+.......+++++||++|.|
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 99999999998762 22222222221111 13689999999999976555444333333321235789999999999
Q ss_pred HHHHHHHHHhhC
Q 015092 271 VEDIRDWILTKL 282 (413)
Q Consensus 271 v~~L~~~l~~~l 282 (413)
+++++++|.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998653
No 26
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.88 E-value=2.7e-21 Score=169.82 Aligned_cols=154 Identities=21% Similarity=0.243 Sum_probs=104.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeee--CCCCceEEEEEEEEeCC-CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT--NKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs--~~~~tt~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.|+++|++|||||||+|+|++....... ..+++|.......+... +..+.+|||||+ .. +...+..++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~--~~-------~~~~~~~~~ 72 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGH--EK-------FIKNMLAGA 72 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCCh--HH-------HHHHHHhhh
Confidence 6899999999999999999975432222 23456666555555554 778999999995 22 223345567
Q ss_pred ccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhH----HHHHHHHHhc-CCCccEEEcccCCC
Q 015092 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI----AKKLEWYEKF-TDVDEVIPVSAKYG 268 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~-~~~~~v~~iSA~~g 268 (413)
..||++++|+|++++........+..++.. ..+|+++|+||+|+...... ....+.+... ....+++++||++|
T Consensus 73 ~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (164)
T cd04171 73 GGIDLVLLVVAADEGIMPQTREHLEILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTG 151 (164)
T ss_pred hcCCEEEEEEECCCCccHhHHHHHHHHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCC
Confidence 899999999999876544333333333321 23499999999999765322 2222333321 12358999999999
Q ss_pred CCHHHHHHHHHh
Q 015092 269 HGVEDIRDWILT 280 (413)
Q Consensus 269 ~gv~~L~~~l~~ 280 (413)
.|++++++.|..
T Consensus 152 ~~v~~l~~~l~~ 163 (164)
T cd04171 152 EGIEELKEYLDE 163 (164)
T ss_pred cCHHHHHHHHhh
Confidence 999999998864
No 27
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.87 E-value=2.3e-20 Score=200.90 Aligned_cols=169 Identities=22% Similarity=0.238 Sum_probs=129.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHH-HHH-HHHHHh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLD-SMM-MKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~-~~~-~~~~~~ 191 (413)
..++|+++|+||||||||+|+|++.+...+++.++||++.....+..++.++.+|||||+......... ..+ .-....
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 346999999999999999999999998888999999999988888888889999999997432211111 111 112345
Q ss_pred hcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCccEEEcccCCC
Q 015092 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYG 268 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~iSA~~g 268 (413)
++..||++++|+|++.+....+..++..+.. .++|+++|+||+|+.+..........+.. ...+.+++++||++|
T Consensus 529 ~i~~advvilViDat~~~s~~~~~i~~~~~~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg 606 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLKVMSMAVD--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTG 606 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCC
Confidence 6789999999999999887766666665554 67999999999999764332222222221 224568899999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 015092 269 HGVEDIRDWILTKLPL 284 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~~ 284 (413)
.|+++|++.+.+.++.
T Consensus 607 ~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 607 WHTNRLAPAMQEALES 622 (712)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988764
No 28
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.87 E-value=1.3e-21 Score=177.35 Aligned_cols=157 Identities=26% Similarity=0.392 Sum_probs=115.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceee-----------------eeCCCCceEEEEEEEEe--CCCeeEEEEeCCCCch
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-----------------VTNKPQTTRHRILGICS--GPEYQMILYDTPGIIE 175 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~-----------------vs~~~~tt~~~~~~~~~--~~~~~~~l~DtpG~~~ 175 (413)
..+|+++|+.++|||||+++|++..... .....+.|.......+. ..+..++++||||+.+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 4589999999999999999998544221 01112334443344444 6788999999999532
Q ss_pred hhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHH---
Q 015092 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE--- 252 (413)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--- 252 (413)
+...+..++..+|++|+|||+..+...+....+..++. .+.|+++|+||+|+.. .......+.+.
T Consensus 83 ---------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~--~~~p~ivvlNK~D~~~-~~~~~~~~~~~~~l 150 (188)
T PF00009_consen 83 ---------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRE--LGIPIIVVLNKMDLIE-KELEEIIEEIKEKL 150 (188)
T ss_dssp ---------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHH--TT-SEEEEEETCTSSH-HHHHHHHHHHHHHH
T ss_pred ---------eeecccceecccccceeeeecccccccccccccccccc--cccceEEeeeeccchh-hhHHHHHHHHHHHh
Confidence 34456666889999999999999998888888888777 7899999999999983 22222222222
Q ss_pred --hc--C--CCccEEEcccCCCCCHHHHHHHHHhhCC
Q 015092 253 --KF--T--DVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 253 --~~--~--~~~~v~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
.. . ...+++++||++|.|+++|++.|.+.+|
T Consensus 151 ~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 151 LKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 11 1 2468999999999999999999999987
No 29
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=2.2e-21 Score=190.27 Aligned_cols=164 Identities=24% Similarity=0.270 Sum_probs=118.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeC-CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
.|+|||.||||||||+|+|++.+.. ++++|+||..+..+.+.. ++.++.++||||+.+.... ...+...+...+..
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~-va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~--~~gLg~~flrhie~ 236 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASE--GAGLGHRFLKHIER 236 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCc-cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCc--cccHHHHHHHHhhh
Confidence 7999999999999999999987754 789999999999998887 5678999999998642211 11123345556789
Q ss_pred ccEEEEEeeCCCCC-chHHHHHHHHccccC---CCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCccEEEcccCCCCC
Q 015092 196 ADCIVVLVDACKAP-ERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 196 aD~vl~VvD~~~~~-~~~~~~l~~~l~~~~---~~~p~ilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
||++|+|+|+++.. ......+...+.... .++|+++|+||+|+........ ....+....+ .+++++||+++.|
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~-~~i~~iSAktg~G 315 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALG-GPVFLISAVTGEG 315 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcC-CCEEEEEcCCCCC
Confidence 99999999998643 112222333332211 3689999999999976543321 2222222122 4799999999999
Q ss_pred HHHHHHHHHhhCCC
Q 015092 271 VEDIRDWILTKLPL 284 (413)
Q Consensus 271 v~~L~~~l~~~l~~ 284 (413)
+++|+++|.+.+..
T Consensus 316 I~eL~~~L~~~l~~ 329 (335)
T PRK12299 316 LDELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
No 30
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.87 E-value=9.1e-21 Score=164.90 Aligned_cols=154 Identities=31% Similarity=0.445 Sum_probs=118.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
+|+++|++|+|||||+|+|++.....++..+++|.......+...+..+.+|||||+.+.. ..+...........+..+
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETE-DEIEKIGIERAREAIEEA 81 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCc-chHHHHHHHHHHHHHhhC
Confidence 7999999999999999999999887778889999887777777778899999999975422 223333334455667899
Q ss_pred cEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHHH
Q 015092 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (413)
Q Consensus 197 D~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~ 276 (413)
|++++|+|++++........+.. . ...|+++|+||+|+...... .......+++++||+++.|+++|++
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~--~--~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~ 150 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL--P--ADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLDELKE 150 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh--h--cCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHHHHHH
Confidence 99999999997665544433332 2 67999999999999865433 1122235899999999999999999
Q ss_pred HHHhhC
Q 015092 277 WILTKL 282 (413)
Q Consensus 277 ~l~~~l 282 (413)
+|.+.+
T Consensus 151 ~l~~~~ 156 (157)
T cd04164 151 ALLELA 156 (157)
T ss_pred HHHHhh
Confidence 998754
No 31
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.86 E-value=6.3e-21 Score=173.34 Aligned_cols=157 Identities=24% Similarity=0.216 Sum_probs=108.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc------eeeeeCCCCceEEEEEEEEeCC--------------CeeEEEEeCCCCchh
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQK------LSIVTNKPQTTRHRILGICSGP--------------EYQMILYDTPGIIEK 176 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~------~~~vs~~~~tt~~~~~~~~~~~--------------~~~~~l~DtpG~~~~ 176 (413)
+|+++|++|+|||||+++|++.. .......+++|.......+.+. +..+.+|||||+..
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~- 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS- 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence 69999999999999999998731 1122334566665544333322 67899999999621
Q ss_pred hhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHH----HHHHHH
Q 015092 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK----KLEWYE 252 (413)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~----~~~~~~ 252 (413)
+...+..++..+|++++|+|++.+........+..... .+.|+++|+||+|+........ ..+.+.
T Consensus 81 --------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~ 150 (192)
T cd01889 81 --------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQ 150 (192)
T ss_pred --------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHH
Confidence 33444555678999999999998765544333333333 4679999999999975433222 122221
Q ss_pred hc-----CCCccEEEcccCCCCCHHHHHHHHHhhCCC
Q 015092 253 KF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 253 ~~-----~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~ 284 (413)
.. ....+++++||++|.|+++|+++|...++.
T Consensus 151 ~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 151 KTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 11 123589999999999999999999999874
No 32
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.86 E-value=2.1e-20 Score=173.57 Aligned_cols=194 Identities=16% Similarity=0.176 Sum_probs=129.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceee-eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015092 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~-vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
....+|+++|.+|||||||+++++...+.. ..++.+.+..............+.+|||||. ..+..+ ...
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~ 81 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ--EKFGGL-------RDG 81 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCc--hhhhhh-------hHH
Confidence 455699999999999999999988766532 2233333333322223334578999999994 333333 334
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCC
Q 015092 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
++..+|++|+|+|.++.. .....|+..+.+ ...+.|+++|+||+|+........... +.... ..+++++||++|.
T Consensus 82 ~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~-~~~~~piilvgNK~Dl~~~~v~~~~~~-~~~~~-~~~~~e~SAk~~~ 158 (219)
T PLN03071 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVT-FHRKK-NLQYYEISAKSNY 158 (219)
T ss_pred HcccccEEEEEEeCCCHHHHHHHHHHHHHHHH-hCCCCcEEEEEEchhhhhccCCHHHHH-HHHhc-CCEEEEcCCCCCC
Confidence 578999999999998764 233344333322 235799999999999864321112222 22222 2478999999999
Q ss_pred CHHHHHHHHHhhCC--------CCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCC
Q 015092 270 GVEDIRDWILTKLP--------LGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNE 318 (413)
Q Consensus 270 gv~~L~~~l~~~l~--------~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~e 318 (413)
|++++|.+|.+.+. ++++.++.....+.+......+.+++.....+..+
T Consensus 159 ~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (219)
T PLN03071 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAAQPLPDD 215 (219)
T ss_pred CHHHHHHHHHHHHHcCcchhcccccccCCcccCCCHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999997663 44566777777777777777777777765544433
No 33
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.86 E-value=8.9e-21 Score=169.62 Aligned_cols=156 Identities=28% Similarity=0.318 Sum_probs=103.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceee--------eeC------CCCceEEEEEEEE-----eCCCeeEEEEeCCCCchhh
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSI--------VTN------KPQTTRHRILGIC-----SGPEYQMILYDTPGIIEKK 177 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~--------vs~------~~~tt~~~~~~~~-----~~~~~~~~l~DtpG~~~~~ 177 (413)
+|+++|++|+|||||+++|++....+ ..+ ..+.|.......+ ...+..+.+|||||+.+
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-- 79 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD-- 79 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh--
Confidence 69999999999999999998743211 111 1233433222222 34567899999999632
Q ss_pred hhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCC-
Q 015092 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD- 256 (413)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~- 256 (413)
+ ...+..++..+|++|+|+|++++........+..+.. .++|+++|+||+|+..... ......+....+
T Consensus 80 ~-------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~ 149 (179)
T cd01890 80 F-------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE--NNLEIIPVINKIDLPSADP-ERVKQQIEDVLGL 149 (179)
T ss_pred h-------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH--cCCCEEEEEECCCCCcCCH-HHHHHHHHHHhCC
Confidence 2 2234556789999999999988764433333333333 5789999999999864321 111222222222
Q ss_pred -CccEEEcccCCCCCHHHHHHHHHhhCCC
Q 015092 257 -VDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 257 -~~~v~~iSA~~g~gv~~L~~~l~~~l~~ 284 (413)
..+++++||++|.|+++|+++|.+.++.
T Consensus 150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (179)
T cd01890 150 DPSEAILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred CcccEEEeeccCCCCHHHHHHHHHhhCCC
Confidence 2358999999999999999999988764
No 34
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.86 E-value=1.1e-20 Score=169.78 Aligned_cols=157 Identities=23% Similarity=0.284 Sum_probs=113.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeee---------------CCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhH
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT---------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML 181 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs---------------~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l 181 (413)
+|+++|.+|+|||||+|+|++....... ...++|.......+...+..+.+|||||+.+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~------ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED------ 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH------
Confidence 4899999999999999999887654321 1233455544445566678999999999632
Q ss_pred HHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHH----HHHHhc---
Q 015092 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL----EWYEKF--- 254 (413)
Q Consensus 182 ~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~----~~~~~~--- 254 (413)
+...+..++..+|++++|+|+.++.......++..++. .+.|+++|+||+|+.......... +.+...
T Consensus 75 ---~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (189)
T cd00881 75 ---FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFI 149 (189)
T ss_pred ---HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHcccccc
Confidence 12234555779999999999998776655555555555 689999999999998643322222 222221
Q ss_pred ---------CCCccEEEcccCCCCCHHHHHHHHHhhCCC
Q 015092 255 ---------TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 255 ---------~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~ 284 (413)
....+++++||++|.|+++++++|...+++
T Consensus 150 ~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 150 STKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred chhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 134689999999999999999999999863
No 35
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=1.1e-20 Score=192.38 Aligned_cols=164 Identities=23% Similarity=0.241 Sum_probs=118.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
..|+|||.||||||||+|+|++.+.. ++++|+||+.+..+++..++.++.++||||+...... ...+.......+..
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpk-IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~--g~gLg~~fLrhier 236 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPK-IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASE--GKGLGLDFLRHIER 236 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCcc-ccccCcccccceEEEEEECCeEEEEEECCCCccccch--hhHHHHHHHHHHHh
Confidence 37999999999999999999998765 6899999999999999988899999999998642111 11222334556788
Q ss_pred ccEEEEEeeCCCC------CchHH---HHHHHHccc--------cCCCCCEEEEEecCCCCChhhHHHHH-HHHHhcCCC
Q 015092 196 ADCIVVLVDACKA------PERID---EILEEGVGD--------HKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDV 257 (413)
Q Consensus 196 aD~vl~VvD~~~~------~~~~~---~~l~~~l~~--------~~~~~p~ilV~NK~Dl~~~~~~~~~~-~~~~~~~~~ 257 (413)
||++|+|||++.. ..... ..+...... ....+|+|+|+||+|+.....+.... ..+... +
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~-g- 314 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEAR-G- 314 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHc-C-
Confidence 9999999999742 11111 122222210 01468999999999997654433322 233332 2
Q ss_pred ccEEEcccCCCCCHHHHHHHHHhhCCC
Q 015092 258 DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 258 ~~v~~iSA~~g~gv~~L~~~l~~~l~~ 284 (413)
.++|++||+++.|+++|+.+|.+.+..
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 479999999999999999999987754
No 36
>PRK04213 GTP-binding protein; Provisional
Probab=99.85 E-value=3.2e-20 Score=169.61 Aligned_cols=163 Identities=26% Similarity=0.348 Sum_probs=107.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh------hhhHHHHHHH
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK------IHMLDSMMMK 187 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~------~~~l~~~~~~ 187 (413)
+.++|+++|.+|||||||+|+|.+..+. ++..+++|+..... ..+ .+.+|||||+.... ...++.....
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 4468999999999999999999998754 66778888765432 222 68999999963210 1112222222
Q ss_pred HHHhhcccccEEEEEeeCCCCCc-----------hHHHHHHHHccccCCCCCEEEEEecCCCCChh--hHHHHHHHHHhc
Q 015092 188 NVRSAGINADCIVVLVDACKAPE-----------RIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKF 254 (413)
Q Consensus 188 ~~~~~~~~aD~vl~VvD~~~~~~-----------~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~~~ 254 (413)
.+...+..+|++++|+|++.... ..+..+...+.. .++|+++|+||+|+.... ........+...
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 160 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLY 160 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcHHHHHHHHHHHhcCC
Confidence 22334567899999999864321 123344444444 579999999999997543 122222222110
Q ss_pred CC----CccEEEcccCCCCCHHHHHHHHHhhCCC
Q 015092 255 TD----VDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 255 ~~----~~~v~~iSA~~g~gv~~L~~~l~~~l~~ 284 (413)
.. ..+++++||++| |+++++++|.+.+++
T Consensus 161 ~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 161 PPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred ccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 00 125899999999 999999999998764
No 37
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=4.1e-21 Score=189.17 Aligned_cols=168 Identities=29% Similarity=0.338 Sum_probs=130.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+.+.|+|+|+||||||||+|+|....+++|++.+||||+.+...++.+|..+.++||+|+.++.....+.....+++..+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~ 346 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRI 346 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999987677778888999999999
Q ss_pred ccccEEEEEeeCCCCCchHHHHHHHHcccc----------CCCCCEEEEEecCCCCCh-hhHHH----HHHHHHhcCCCc
Q 015092 194 INADCIVVLVDACKAPERIDEILEEGVGDH----------KDKLPILLVLNKKDLIKP-GEIAK----KLEWYEKFTDVD 258 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~----------~~~~p~ilV~NK~Dl~~~-~~~~~----~~~~~~~~~~~~ 258 (413)
..||++++|+|+.......+..+.+.+... ..+.|++++.||+|+..+ ..... .... .....+.
T Consensus 347 ~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~~ 425 (531)
T KOG1191|consen 347 ERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVFP 425 (531)
T ss_pred hhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCcccc
Confidence 999999999999655433332222222111 145899999999999754 11111 1111 1111233
Q ss_pred cEEEcccCCCCCHHHHHHHHHhhC
Q 015092 259 EVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 259 ~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
.+..+|+++++|+..|...|.+.+
T Consensus 426 i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 426 IVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred eEEEeeechhhhHHHHHHHHHHHH
Confidence 455699999999999999988754
No 38
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.85 E-value=2.1e-20 Score=164.03 Aligned_cols=155 Identities=21% Similarity=0.249 Sum_probs=108.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+++|++|||||||+++|++.++.. +..+.++.+.....+..++ .++.+|||||. ..+.. .....+.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~--~~~~~-------~~~~~~~ 71 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN-QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ--ERFRS-------LIPSYIR 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc-cCCCceeeeEEEEEEEECCEEEEEEEEECCCc--HHHHH-------HHHHHhc
Confidence 79999999999999999999988753 4556666665555544444 56899999994 33222 2444578
Q ss_pred cccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhh-HHHHHHHHHhcCCCccEEEcccCCCCCH
Q 015092 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gv 271 (413)
.+|++++|+|++++. .....++.........+.|+++|+||+|+..... .......+....+ .+++++||++|.|+
T Consensus 72 ~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 150 (161)
T cd01861 72 DSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELN-AMFIETSAKAGHNV 150 (161)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhC-CEEEEEeCCCCCCH
Confidence 999999999998653 3444444444333223599999999999953322 1222222222223 57999999999999
Q ss_pred HHHHHHHHhhC
Q 015092 272 EDIRDWILTKL 282 (413)
Q Consensus 272 ~~L~~~l~~~l 282 (413)
++++.+|.+.+
T Consensus 151 ~~l~~~i~~~l 161 (161)
T cd01861 151 KELFRKIASAL 161 (161)
T ss_pred HHHHHHHHHhC
Confidence 99999998753
No 39
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.85 E-value=3.3e-20 Score=163.80 Aligned_cols=156 Identities=20% Similarity=0.229 Sum_probs=109.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeC---CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
|.|+|+|++|+|||||+|+|.+..+.. ...+++|.......+.. .+..+.+|||||+ ..+..+ ....
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~--~~~~~~-------~~~~ 70 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGH--EAFTNM-------RARG 70 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCc--HHHHHH-------HHHH
Confidence 469999999999999999999877653 34445665544444444 3678999999995 222222 2334
Q ss_pred cccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh--hHHHHHHHHH-----hcCCCccEEEccc
Q 015092 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYE-----KFTDVDEVIPVSA 265 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~-----~~~~~~~v~~iSA 265 (413)
+..+|++++|+|++++........+..++. .++|+++|+||+|+.... ........+. ......+++++||
T Consensus 71 ~~~~d~il~v~d~~~~~~~~~~~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (168)
T cd01887 71 ASLTDIAILVVAADDGVMPQTIEAIKLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSA 148 (168)
T ss_pred HhhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeec
Confidence 678999999999988765544444444555 678999999999987432 2222222221 1122357999999
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 015092 266 KYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 266 ~~g~gv~~L~~~l~~~l~ 283 (413)
++|.|+.+|+++|.+...
T Consensus 149 ~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 149 KTGEGIDDLLEAILLLAE 166 (168)
T ss_pred ccCCCHHHHHHHHHHhhh
Confidence 999999999999987653
No 40
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.85 E-value=2e-20 Score=166.44 Aligned_cols=157 Identities=17% Similarity=0.208 Sum_probs=107.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
+|+++|.+|||||||+++|.+..+. .+ .+|.......+...+..+.+|||||.. .+. ..+..++..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~---~~-~~T~~~~~~~~~~~~~~i~l~Dt~G~~--~~~-------~~~~~~~~~a 67 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM---QP-IPTIGFNVETVEYKNLKFTIWDVGGKH--KLR-------PLWKHYYLNT 67 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC---Cc-CCcCceeEEEEEECCEEEEEEECCCCh--hcc-------hHHHHHhccC
Confidence 4899999999999999999987542 22 223222223455677899999999952 222 2244557899
Q ss_pred cEEEEEeeCCCC--CchHHHHHHHHccccC-CCCCEEEEEecCCCCChhhHHHHHHHHHhcCC-----CccEEEcccCCC
Q 015092 197 DCIVVLVDACKA--PERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD-----VDEVIPVSAKYG 268 (413)
Q Consensus 197 D~vl~VvD~~~~--~~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~-----~~~v~~iSA~~g 268 (413)
|+++||+|+++. ......++...++... .+.|+++|+||+|+............. .... ...++++||++|
T Consensus 68 d~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Sa~~g 146 (169)
T cd04158 68 QAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELL-SLHKLCCGRSWYIQGCDARSG 146 (169)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHh-CCccccCCCcEEEEeCcCCCC
Confidence 999999999875 2444455555554321 458999999999996432323222222 1111 125789999999
Q ss_pred CCHHHHHHHHHhhCCCCCC
Q 015092 269 HGVEDIRDWILTKLPLGPA 287 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~~~~~ 287 (413)
.|+++++++|.+.+.++++
T Consensus 147 ~gv~~~f~~l~~~~~~~~~ 165 (169)
T cd04158 147 MGLYEGLDWLSRQLVAAGV 165 (169)
T ss_pred CCHHHHHHHHHHHHhhccc
Confidence 9999999999998877654
No 41
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.85 E-value=1.4e-20 Score=166.41 Aligned_cols=155 Identities=22% Similarity=0.290 Sum_probs=103.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcee---eeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLS---IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~---~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+|+++|++|+|||||+|+|.+.... .......+|.......+..++..+.+|||||+. .+. ..+...+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~--~~~-------~~~~~~~ 71 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQE--SLR-------SLWDKYY 71 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCCh--hhH-------HHHHHHh
Confidence 4899999999999999999875432 112233344443344556678899999999953 222 2344557
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHhcC-----CCccEEEccc
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT-----DVDEVIPVSA 265 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~-----~~~~v~~iSA 265 (413)
..+|++++|+|++... .....++...++.. ..+.|+++|+||+|+............+.... ...+++++||
T Consensus 72 ~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 151 (167)
T cd04160 72 AECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSA 151 (167)
T ss_pred CCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeC
Confidence 8999999999987643 22223333333321 15799999999999875433333333332211 2247999999
Q ss_pred CCCCCHHHHHHHHHh
Q 015092 266 KYGHGVEDIRDWILT 280 (413)
Q Consensus 266 ~~g~gv~~L~~~l~~ 280 (413)
++|.|+++++++|.+
T Consensus 152 ~~g~gv~e~~~~l~~ 166 (167)
T cd04160 152 LEGTGVREGIEWLVE 166 (167)
T ss_pred CCCcCHHHHHHHHhc
Confidence 999999999999875
No 42
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.85 E-value=1.2e-20 Score=184.88 Aligned_cols=162 Identities=27% Similarity=0.356 Sum_probs=118.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC-eeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
.|+|||.||||||||+|+|++.+.. ++++|.||..+..+.+...+ .++.++||||+...... ...+...+.+.+..
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~~~-va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~--~~gLg~~flrhier 235 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASE--GAGLGHRFLKHIER 235 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcc--cccHHHHHHHHHHh
Confidence 7999999999999999999987654 78999999999888888766 89999999998542211 11122334455678
Q ss_pred ccEEEEEeeCCCC----CchHHHHHHHHccccC---CCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCC
Q 015092 196 ADCIVVLVDACKA----PERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 196 aD~vl~VvD~~~~----~~~~~~~l~~~l~~~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
||++|+|+|+++. .......+.+.+.... .++|+++|+||+|+..........+.+....+ .+++++||+++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~-~~vi~iSAktg 314 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALG-KPVFPISALTG 314 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcC-CcEEEEEccCC
Confidence 9999999999864 1111222222222211 46899999999999876555545555544333 47999999999
Q ss_pred CCHHHHHHHHHhhC
Q 015092 269 HGVEDIRDWILTKL 282 (413)
Q Consensus 269 ~gv~~L~~~l~~~l 282 (413)
.|+++|+++|.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998765
No 43
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.85 E-value=3.3e-20 Score=170.00 Aligned_cols=160 Identities=28% Similarity=0.363 Sum_probs=109.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCe-eEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~-~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
++|+|+|++|||||||+|+|++.... +...+.+|.......+...+. .+.+|||||+.......+...+. .....+.
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-~~~~~~~ 119 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVY-AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFR-STLEEVA 119 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhc-cCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHH-HHHHHHh
Confidence 58999999999999999999998743 445566666555555554444 89999999985422222222222 2334467
Q ss_pred cccEEEEEeeCCCCCchHH-HHHHHHccccC-CCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHH
Q 015092 195 NADCIVVLVDACKAPERID-EILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~~~~-~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~ 272 (413)
.+|++++|+|++++..... ..+.+.++... .+.|+++|+||+|+....... .... ....+++++||++|.|++
T Consensus 120 ~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~--~~~~~~~~~Sa~~~~gi~ 194 (204)
T cd01878 120 EADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLE--AGRPDAVFISAKTGEGLD 194 (204)
T ss_pred cCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhh--cCCCceEEEEcCCCCCHH
Confidence 8999999999987653322 22223332221 468999999999997654433 2222 234579999999999999
Q ss_pred HHHHHHHhhC
Q 015092 273 DIRDWILTKL 282 (413)
Q Consensus 273 ~L~~~l~~~l 282 (413)
+++++|...+
T Consensus 195 ~l~~~L~~~~ 204 (204)
T cd01878 195 ELLEAIEELL 204 (204)
T ss_pred HHHHHHHhhC
Confidence 9999998653
No 44
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.85 E-value=2.8e-20 Score=165.97 Aligned_cols=154 Identities=20% Similarity=0.290 Sum_probs=104.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+..+|+++|++|||||||+++|.+..+....++.+.. ...+..++..+.+|||||. ..+. ..+..++
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~l~l~D~~G~--~~~~-------~~~~~~~ 79 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQ----IKTLEYEGYKLNIWDVGGQ--KTLR-------PYWRNYF 79 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc----eEEEEECCEEEEEEECCCC--HHHH-------HHHHHHh
Confidence 4568999999999999999999987554333332211 1223345688999999994 3322 2244557
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccc-cCCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCccEEEcccCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~iSA~~ 267 (413)
..+|++++|+|++++. .....++...++. ...+.|+++|+||+|+............+.. .....+++++||++
T Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04154 80 ESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVT 159 (173)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCC
Confidence 8999999999998762 2333344444332 1257999999999999754332333333321 11235799999999
Q ss_pred CCCHHHHHHHHHh
Q 015092 268 GHGVEDIRDWILT 280 (413)
Q Consensus 268 g~gv~~L~~~l~~ 280 (413)
|.|+++++++|.+
T Consensus 160 g~gi~~l~~~l~~ 172 (173)
T cd04154 160 GEGLLQGIDWLVD 172 (173)
T ss_pred CcCHHHHHHHHhc
Confidence 9999999999864
No 45
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.85 E-value=2e-20 Score=169.91 Aligned_cols=164 Identities=21% Similarity=0.202 Sum_probs=107.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceE-EEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~-~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+|+++|.+|||||||++++.+..+.. ...+.++. +.....+. ....++.+||||| +..+..+ ...++
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~~-------~~~~~ 71 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLN-GNFIATVGIDFRNKVVTVDGVKVKLQIWDTAG--QERFRSV-------THAYY 71 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc-cCcCCcccceeEEEEEEECCEEEEEEEEeCCC--cHHHHHh-------hHHHc
Confidence 79999999999999999999877642 22222322 22222222 2346789999999 3333222 34457
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccCCCCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
..+|++|+|+|+++.. .....++..+......+.|+++|+||+|+.....+ ......+....+ .+++++||++|.|
T Consensus 72 ~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~-~~~~e~Sa~~~~~ 150 (191)
T cd04112 72 RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYG-VPFMETSAKTGLN 150 (191)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcC-CeEEEEeCCCCCC
Confidence 8899999999998753 22333333332222247899999999999643221 112222222223 4899999999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCC
Q 015092 271 VEDIRDWILTKLPLGPAYYPK 291 (413)
Q Consensus 271 v~~L~~~l~~~l~~~~~~~~~ 291 (413)
+++|+.+|.+.+....+.++.
T Consensus 151 v~~l~~~l~~~~~~~~~~~~~ 171 (191)
T cd04112 151 VELAFTAVAKELKHRKYEQPD 171 (191)
T ss_pred HHHHHHHHHHHHHHhccccCC
Confidence 999999999988776655443
No 46
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.85 E-value=1.5e-20 Score=164.27 Aligned_cols=156 Identities=26% Similarity=0.326 Sum_probs=109.3
Q ss_pred EEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEE
Q 015092 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 199 (413)
Q Consensus 120 ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~v 199 (413)
++|++|||||||+|+|++.. ..++..+++|.+.....+..++..+.+|||||+........+..+....... ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEE
Confidence 57999999999999999986 3467788889887777777778899999999974322211222222222222 589999
Q ss_pred EEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHHHHHH
Q 015092 200 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 279 (413)
Q Consensus 200 l~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~~l~ 279 (413)
++|+|+.+.... .. +...+.. .++|+++|+||+|+.....+......+....+ .+++++||.+|.|+++++++|.
T Consensus 79 i~v~d~~~~~~~-~~-~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~iSa~~~~~~~~l~~~l~ 153 (158)
T cd01879 79 VNVVDATNLERN-LY-LTLQLLE--LGLPVVVALNMIDEAEKRGIKIDLDKLSELLG-VPVVPTSARKGEGIDELKDAIA 153 (158)
T ss_pred EEEeeCCcchhH-HH-HHHHHHH--cCCCEEEEEehhhhcccccchhhHHHHHHhhC-CCeEEEEccCCCCHHHHHHHHH
Confidence 999999874322 22 2223333 57899999999999765433322233333223 4799999999999999999998
Q ss_pred hhC
Q 015092 280 TKL 282 (413)
Q Consensus 280 ~~l 282 (413)
..+
T Consensus 154 ~~~ 156 (158)
T cd01879 154 ELA 156 (158)
T ss_pred HHh
Confidence 764
No 47
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.85 E-value=2.2e-20 Score=189.76 Aligned_cols=158 Identities=28% Similarity=0.349 Sum_probs=119.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
...+|+++|+||||||||+|+|++....++++.++||++.....+..++..+.+|||||+.+ ....+..........++
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~-~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIRE-HADFVERLGIEKSFKAI 280 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCccc-chhHHHHHHHHHHHHHH
Confidence 34589999999999999999999998888999999999998888888899999999999743 22333444445566778
Q ss_pred ccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHH
Q 015092 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~ 273 (413)
..||++++|+|++++......+ +..+.. .++|+++|+||+|+... ... .+.... ..+++.+||++ .|+++
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~~-l~~~~~--~~~piIlV~NK~Dl~~~-~~~----~~~~~~-~~~~~~vSak~-~gI~~ 350 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDFL-IIDLNK--SKKPFILVLNKIDLKIN-SLE----FFVSSK-VLNSSNLSAKQ-LKIKA 350 (442)
T ss_pred hhCCEEEEEEECCCCCChhHHH-HHHHhh--CCCCEEEEEECccCCCc-chh----hhhhhc-CCceEEEEEec-CCHHH
Confidence 9999999999998876544333 333333 57899999999999654 211 111111 23689999998 58888
Q ss_pred HHHHHHhhC
Q 015092 274 IRDWILTKL 282 (413)
Q Consensus 274 L~~~l~~~l 282 (413)
+++.|.+.+
T Consensus 351 ~~~~L~~~i 359 (442)
T TIGR00450 351 LVDLLTQKI 359 (442)
T ss_pred HHHHHHHHH
Confidence 777777654
No 48
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.85 E-value=3.2e-20 Score=166.79 Aligned_cols=157 Identities=25% Similarity=0.280 Sum_probs=107.9
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCc-eeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhh-hHHHHHH--
Q 015092 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH-MLDSMMM-- 186 (413)
Q Consensus 111 ~~~~~~~v~ivG~~~~GKSsLln~L~~~~-~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-~l~~~~~-- 186 (413)
+..+.++|+|+|++|+|||||+|+|++.. ...+++.+++|.+.....+. .++.+|||||+...... .....+.
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN---DGFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC---CcEEEEeCCCCccccCChhHHHHHHHH
Confidence 34567799999999999999999999986 55567888888775544332 37999999997431110 0111111
Q ss_pred -HHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHH----HHHHHHhcCCCccEE
Q 015092 187 -KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK----KLEWYEKFTDVDEVI 261 (413)
Q Consensus 187 -~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~----~~~~~~~~~~~~~v~ 261 (413)
.........+|++++|+|++++.......+...+.. .+.|+++|+||+|+........ ..+.+.......++|
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~ 168 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQ 168 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceE
Confidence 122222345789999999998877766666666655 6799999999999986543332 223333322224799
Q ss_pred EcccCCCCCHH
Q 015092 262 PVSAKYGHGVE 272 (413)
Q Consensus 262 ~iSA~~g~gv~ 272 (413)
++||++|+|++
T Consensus 169 ~~Sa~~g~gi~ 179 (179)
T TIGR03598 169 LFSSLKKTGID 179 (179)
T ss_pred EEECCCCCCCC
Confidence 99999999974
No 49
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.85 E-value=1.8e-20 Score=200.39 Aligned_cols=204 Identities=18% Similarity=0.212 Sum_probs=139.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015092 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
..|+|.|+|+|++|+|||||+++|.+..+. .....+.|.+.....+.+.+..++||||||+ ..+..+ +..
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGh--e~F~~m-------~~r 356 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGH--EAFTAM-------RAR 356 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCC--ccchhH-------HHh
Confidence 458899999999999999999999987765 3345566766655566677889999999995 334332 334
Q ss_pred hcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh--hHHHHHHHH----HhcCCCccEEEccc
Q 015092 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWY----EKFTDVDEVIPVSA 265 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~--~~~~~~~~~----~~~~~~~~v~~iSA 265 (413)
.+..+|++|+|||++++...++...+..++. .+.|+|+|+||+|+.... .+...+... ..+.+..++|++||
T Consensus 357 ga~~aDiaILVVdAddGv~~qT~e~i~~a~~--~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSA 434 (787)
T PRK05306 357 GAQVTDIVVLVVAADDGVMPQTIEAINHAKA--AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSA 434 (787)
T ss_pred hhhhCCEEEEEEECCCCCCHhHHHHHHHHHh--cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeC
Confidence 5778999999999999887777666666665 689999999999996432 222111111 11223468999999
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHh-hcCCCCCceeEEEEEEEEecCCCeeE
Q 015092 266 KYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFM-QYRNEVPYACQVNVVSYKTRPTAKDF 339 (413)
Q Consensus 266 ~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~-~~~~eipys~~v~v~~~~~~~~~~~~ 339 (413)
++|.|+++|+++|......... ...+.+.....+ +. ...+..|..+.+.+..|+.+.|..+.
T Consensus 435 ktG~GI~eLle~I~~~~e~~~l-------~~~~~~~~~g~V-----~es~~dkg~G~v~~v~V~sGtLk~Gd~vv 497 (787)
T PRK05306 435 KTGEGIDELLEAILLQAEVLEL-------KANPDRPARGTV-----IEAKLDKGRGPVATVLVQNGTLKVGDIVV 497 (787)
T ss_pred CCCCCchHHHHhhhhhhhhhhc-------ccCCCCCcEEEE-----EEEEEcCCCeEEEEEEEecCeEecCCEEE
Confidence 9999999999998753211000 000111111111 11 22567888999999999998875543
No 50
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.85 E-value=3e-20 Score=167.78 Aligned_cols=155 Identities=20% Similarity=0.158 Sum_probs=106.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+..+|+++|.+|||||||+++|.+..+..+. +|.......+..++.++.+|||||.. ... ..+..++
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~--~~~-------~~~~~~~ 82 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQ----PTQHPTSEELAIGNIKFTTFDLGGHQ--QAR-------RLWKDYF 82 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcccC----CccccceEEEEECCEEEEEEECCCCH--HHH-------HHHHHHh
Confidence 5579999999999999999999987664332 22222333445567899999999952 222 2244567
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHhc----------CCCccE
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF----------TDVDEV 260 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~----------~~~~~v 260 (413)
..+|++++|+|++++. .....++.++++.. ..+.|+++|+||+|+.......+..+.+... .....+
T Consensus 83 ~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i 162 (184)
T smart00178 83 PEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEV 162 (184)
T ss_pred CCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEE
Confidence 8999999999998753 22333444444321 1578999999999986432223333333211 124469
Q ss_pred EEcccCCCCCHHHHHHHHHhh
Q 015092 261 IPVSAKYGHGVEDIRDWILTK 281 (413)
Q Consensus 261 ~~iSA~~g~gv~~L~~~l~~~ 281 (413)
+++||++|.|++++++||.+.
T Consensus 163 ~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 163 FMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEeecccCCChHHHHHHHHhh
Confidence 999999999999999999865
No 51
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.85 E-value=3e-20 Score=165.32 Aligned_cols=154 Identities=18% Similarity=0.157 Sum_probs=102.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+..+|+++|.+|||||||+++|....+....++.+.+. ..+...+..+.+|||||. ..+.. .+..++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~----~~~~~~~~~~~l~Dt~G~--~~~~~-------~~~~~~ 74 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV----ETVTYKNVKFNVWDVGGQ--DKIRP-------LWRHYY 74 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccce----EEEEECCEEEEEEECCCC--HHHHH-------HHHHHh
Confidence 34689999999999999999998766542222222221 123346789999999995 33222 234568
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCccEEEcccCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~iSA~~ 267 (413)
..||++|||+|+++.. .....++.+.+... ..+.|++||+||+|+.......+....+.. .....+++++||++
T Consensus 75 ~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~ 154 (168)
T cd04149 75 TGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 154 (168)
T ss_pred ccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCC
Confidence 8999999999998752 33444555554431 146899999999998643222222222211 11223689999999
Q ss_pred CCCHHHHHHHHHh
Q 015092 268 GHGVEDIRDWILT 280 (413)
Q Consensus 268 g~gv~~L~~~l~~ 280 (413)
|.|+++++++|.+
T Consensus 155 g~gv~~~~~~l~~ 167 (168)
T cd04149 155 GDGLYEGLTWLSS 167 (168)
T ss_pred CCChHHHHHHHhc
Confidence 9999999999864
No 52
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.85 E-value=1.3e-19 Score=161.46 Aligned_cols=168 Identities=27% Similarity=0.318 Sum_probs=124.9
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCc-eeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh-hhhHHHHHHHH
Q 015092 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK-IHMLDSMMMKN 188 (413)
Q Consensus 111 ~~~~~~~v~ivG~~~~GKSsLln~L~~~~-~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~-~~~l~~~~~~~ 188 (413)
|....+-||++|++|||||||+|+|++.+ .+.+|.+||.|+......+.. .+.++|.||++-.. .....+...+.
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHHHH
Confidence 33355689999999999999999999966 577999999999877665543 38899999985322 11222222222
Q ss_pred HHhhc---ccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHh----cCCCc-cE
Q 015092 189 VRSAG---INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK----FTDVD-EV 260 (413)
Q Consensus 189 ~~~~~---~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~----~~~~~-~v 260 (413)
+..++ ..-.++++++|+.+++...+..+.+.+.. .+.|+++|+||+|..+..+.......... ..... .+
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~--~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~ 174 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE--LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWV 174 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceE
Confidence 33333 34678899999999999999999998888 89999999999999987665444433332 11111 17
Q ss_pred EEcccCCCCCHHHHHHHHHhhCC
Q 015092 261 IPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 261 ~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
+..|+.++.|+++|...|.+.+.
T Consensus 175 ~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 175 VLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred EEEecccccCHHHHHHHHHHHhh
Confidence 88999999999999999988764
No 53
>PRK11058 GTPase HflX; Provisional
Probab=99.85 E-value=3.5e-20 Score=187.32 Aligned_cols=163 Identities=23% Similarity=0.259 Sum_probs=115.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCe-eEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~-~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+.|+|+|+||||||||+|+|++.++. +++.+++|.+.....+...+. .+.+|||||+.......+...+. .+...+.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~-~tl~~~~ 275 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFK-ATLQETR 275 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHH-HHHHHhh
Confidence 58999999999999999999998876 788999999887766665543 88999999984432233333343 3456678
Q ss_pred cccEEEEEeeCCCCCchHH-HHHHHHccccC-CCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHH
Q 015092 195 NADCIVVLVDACKAPERID-EILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~~~~-~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~ 272 (413)
.||++|+|+|++++..... ..+...+.... .++|+++|+||+|+....... ..... .+...++++||++|.|++
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~--~~~~~--~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPR--IDRDE--ENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHH--HHHHh--cCCCceEEEeCCCCCCHH
Confidence 9999999999988653222 11222222211 478999999999997532111 11111 122235889999999999
Q ss_pred HHHHHHHhhCCC
Q 015092 273 DIRDWILTKLPL 284 (413)
Q Consensus 273 ~L~~~l~~~l~~ 284 (413)
+|+++|.+.+..
T Consensus 352 eL~e~I~~~l~~ 363 (426)
T PRK11058 352 LLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHhhh
Confidence 999999998753
No 54
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.84 E-value=5.8e-20 Score=162.35 Aligned_cols=157 Identities=19% Similarity=0.191 Sum_probs=103.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.+|+++|++|+|||||+++|.+..+....... .+.+.....+..++ ..+.+|||||. ..+. ......+
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~l~i~D~~G~--~~~~-------~~~~~~~ 73 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNT-IGVDFTMKTLEIEGKRVKLQIWDTAGQ--ERFR-------TITQSYY 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCc-cceEEEEEEEEECCEEEEEEEEECCCh--HHHH-------HHHHHHh
Confidence 58999999999999999999887654221111 11122222233333 57899999994 3322 2344457
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccCCCCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
..+|++++|+|++++. .....++.........+.|+++|+||+|+...... ......+....+...++++||++|.|
T Consensus 74 ~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 153 (165)
T cd01864 74 RSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQN 153 (165)
T ss_pred ccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCC
Confidence 8999999999998764 23334444333322257899999999999754321 12223333334445789999999999
Q ss_pred HHHHHHHHHhhC
Q 015092 271 VEDIRDWILTKL 282 (413)
Q Consensus 271 v~~L~~~l~~~l 282 (413)
+++++..|.+.+
T Consensus 154 v~~~~~~l~~~l 165 (165)
T cd01864 154 VEEAFLLMATEL 165 (165)
T ss_pred HHHHHHHHHHhC
Confidence 999999998653
No 55
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=3e-20 Score=186.86 Aligned_cols=164 Identities=26% Similarity=0.307 Sum_probs=117.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC-CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
.|++||.||||||||+|+|++.+.. ++++|.||..+..+.+... +.++.++||||+...... ...+...+...+..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~k-Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~--~~gLg~~fLrhier 236 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPK-IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE--GVGLGHQFLRHIER 236 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCc-cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc--cchHHHHHHHHHhh
Confidence 7999999999999999999998755 6889999999998888776 789999999998642111 11233344555678
Q ss_pred ccEEEEEeeCCCC----CchHHHHHHHHccccC---CCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCC
Q 015092 196 ADCIVVLVDACKA----PERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 196 aD~vl~VvD~~~~----~~~~~~~l~~~l~~~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
||++|+|+|+++. +......+.+.+.... .++|.++|+||+|+..... ....+.+..+ .+++++||+++
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e---~l~~l~~~l~-~~i~~iSA~tg 312 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEE---NLEEFKEKLG-PKVFPISALTG 312 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHH---HHHHHHHHhC-CcEEEEeCCCC
Confidence 9999999999753 1112223333333221 4689999999999854321 1122222222 47999999999
Q ss_pred CCHHHHHHHHHhhCCCCCC
Q 015092 269 HGVEDIRDWILTKLPLGPA 287 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~~~~~ 287 (413)
.|+++|+++|.+.+...+.
T Consensus 313 eGI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 313 QGLDELLYAVAELLEETPE 331 (424)
T ss_pred CCHHHHHHHHHHHHHhCcc
Confidence 9999999999988875543
No 56
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.84 E-value=1e-20 Score=200.64 Aligned_cols=203 Identities=17% Similarity=0.220 Sum_probs=133.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEe----CCCeeEEEEeCCCCchhhhhhHHHHHHHH
Q 015092 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS----GPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~----~~~~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (413)
.+.+.|+|+|++|+|||||+++|.+..+.. ...++.|.+.....+. ..+..+.||||||+ ..+. ..
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh--e~F~-------~m 311 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH--EAFS-------SM 311 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCcH--HHHH-------HH
Confidence 477899999999999999999999877652 3344555432222222 24588999999994 3333 23
Q ss_pred HHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh--hHHHHHHHH----HhcCCCccEEE
Q 015092 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWY----EKFTDVDEVIP 262 (413)
Q Consensus 189 ~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~--~~~~~~~~~----~~~~~~~~v~~ 262 (413)
+..++..+|++|+|||++++...++...+..+.. .+.|+|+|+||+|+.... .+...+..+ ....+..++++
T Consensus 312 r~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~--~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~ 389 (742)
T CHL00189 312 RSRGANVTDIAILIIAADDGVKPQTIEAINYIQA--ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIP 389 (742)
T ss_pred HHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh--cCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEE
Confidence 4445789999999999998877766666666655 679999999999997532 122111111 11233468999
Q ss_pred cccCCCCCHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCCee
Q 015092 263 VSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKD 338 (413)
Q Consensus 263 iSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~~v~v~~~~~~~~~~~ 338 (413)
+||++|.|+++|+++|........... .+.......+++ ....+..|..+.+.+..|+.+.|..+
T Consensus 390 VSAktG~GIdeLle~I~~l~e~~~lk~-------~~~~~~~g~V~e----~~iD~~~G~V~~~~V~sGtLr~GD~v 454 (742)
T CHL00189 390 ISASQGTNIDKLLETILLLAEIEDLKA-------DPTQLAQGIILE----AHLDKTKGPVATILVQNGTLHIGDII 454 (742)
T ss_pred EECCCCCCHHHHHHhhhhhhhhhcccC-------CCCCCceEEEEE----EEEcCCCceEEEEEEEcCEEecCCEE
Confidence 999999999999999987642110000 000000010110 12256788888999999998877544
No 57
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.84 E-value=1.5e-20 Score=167.07 Aligned_cols=159 Identities=30% Similarity=0.360 Sum_probs=110.4
Q ss_pred EEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC-CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccE
Q 015092 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 198 (413)
Q Consensus 120 ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ 198 (413)
++|++|||||||+|+|.+... .++..+++|.....+.+... +.++.+|||||+...... .+.+...+...+..+|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASE--GRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhc--CCCccHHHHHHHhccCE
Confidence 579999999999999999876 46778888888877777777 889999999997431110 01112233445678999
Q ss_pred EEEEeeCCCCC-----ch---HHHHHHHHcccc-------CCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEc
Q 015092 199 IVVLVDACKAP-----ER---IDEILEEGVGDH-------KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPV 263 (413)
Q Consensus 199 vl~VvD~~~~~-----~~---~~~~l~~~l~~~-------~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~i 263 (413)
+++|+|+++.. .. ...+........ ..++|+++|+||+|+....................+++++
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPI 157 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEE
Confidence 99999998762 11 111222221111 0368999999999998665544331112222234579999
Q ss_pred ccCCCCCHHHHHHHHHhh
Q 015092 264 SAKYGHGVEDIRDWILTK 281 (413)
Q Consensus 264 SA~~g~gv~~L~~~l~~~ 281 (413)
||++|.|++++++++...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998764
No 58
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.84 E-value=6.6e-20 Score=160.45 Aligned_cols=155 Identities=21% Similarity=0.160 Sum_probs=101.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.+|+++|.+|||||||+|+|++..+. ....+|+.......+..+ ...+.+|||||. ..+..+ ...++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~l-------~~~~~ 70 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ--EEYSAM-------RDQYM 70 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--CCcCCcchheEEEEEEECCEEEEEEEEECCCC--cchHHH-------HHHHH
Confidence 37999999999999999999987754 333444433333333333 345788999994 333333 33457
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
..+|++++|+|.++.. .....++....+.. ..+.|+++|+||+|+............+....+ .+++++||++|.|
T Consensus 71 ~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 149 (162)
T cd04138 71 RTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYG-IPYIETSAKTRQG 149 (162)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhC-CeEEEecCCCCCC
Confidence 7899999999988643 22333333333221 157899999999999753222222222222222 3799999999999
Q ss_pred HHHHHHHHHhhC
Q 015092 271 VEDIRDWILTKL 282 (413)
Q Consensus 271 v~~L~~~l~~~l 282 (413)
+++++++|.+.+
T Consensus 150 i~~l~~~l~~~~ 161 (162)
T cd04138 150 VEEAFYTLVREI 161 (162)
T ss_pred HHHHHHHHHHHh
Confidence 999999998654
No 59
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.84 E-value=5.4e-20 Score=168.19 Aligned_cols=165 Identities=19% Similarity=0.211 Sum_probs=104.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+|+|.+|||||||++++++..+... ..|.++.......+..++ ..+.+|||||...... ............++.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~-~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~-~~~~e~~~~~~~~~~ 79 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEE-YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPG-TAGQEWMDPRFRGLR 79 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcc-cCCccccccceeEEEECCEEEEEEEEeCCCcccCCc-cchhHHHHHHHhhhc
Confidence 799999999999999999998876532 223332222222223333 5788999999643211 111112223445678
Q ss_pred cccEEEEEeeCCCCCch--HHHHHHHHcccc---CCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCC
Q 015092 195 NADCIVVLVDACKAPER--IDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~~--~~~~l~~~l~~~---~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
.||++|+|+|++++..- ...++..+.... ..+.|+++|+||+|+...+... .....+.......+++++||++|
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 99999999999875422 222222222211 2578999999999996432211 11222211112358999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015092 269 HGVEDIRDWILTKLP 283 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~ 283 (413)
.|+++|++.+...+.
T Consensus 160 ~~v~~lf~~i~~~~~ 174 (198)
T cd04142 160 WHILLLFKELLISAT 174 (198)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999987664
No 60
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.84 E-value=8.7e-20 Score=166.21 Aligned_cols=145 Identities=19% Similarity=0.180 Sum_probs=105.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCce------ee---------eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKL------SI---------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~------~~---------vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 180 (413)
.+|+++|++|+|||||+++|++... .. .....+.|.+.....+.+++.+++|+||||+..
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~----- 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD----- 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH-----
Confidence 4799999999999999999986411 00 112456677766666777889999999999632
Q ss_pred HHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCC-EEEEEecCCCCChhhHHH-----HHHHHHhc
Q 015092 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-----KLEWYEKF 254 (413)
Q Consensus 181 l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilV~NK~Dl~~~~~~~~-----~~~~~~~~ 254 (413)
+...+..++..+|++++|+|+..+...++..++..+.. .+.| +|+|+||+|+.......+ ....+...
T Consensus 78 ----~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~ 151 (195)
T cd01884 78 ----YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQ--VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKY 151 (195)
T ss_pred ----HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 45566777889999999999999888888777777766 5676 779999999974332221 11222221
Q ss_pred C---CCccEEEcccCCCCCH
Q 015092 255 T---DVDEVIPVSAKYGHGV 271 (413)
Q Consensus 255 ~---~~~~v~~iSA~~g~gv 271 (413)
. ...+++++||++|.|+
T Consensus 152 g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 152 GFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred cccccCCeEEEeeCccccCC
Confidence 1 2368999999999884
No 61
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.84 E-value=1.7e-19 Score=163.73 Aligned_cols=166 Identities=27% Similarity=0.335 Sum_probs=114.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCc-eeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh-hhHHHH---HHHH
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDSM---MMKN 188 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~-~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~l~~~---~~~~ 188 (413)
..++|+++|++|||||||+|+|++.. ...+++.+++|+....... +.++.+|||||+..... ...... +...
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 45689999999999999999999976 5566778888876543322 36899999999642110 011111 1222
Q ss_pred HHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCC--CccEEEcccC
Q 015092 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD--VDEVIPVSAK 266 (413)
Q Consensus 189 ~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~--~~~v~~iSA~ 266 (413)
.......++++++|+|++.+.......+...+.. .+.|+++++||+|+............+..... ..+++++||+
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~ 177 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSL 177 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcC
Confidence 2233345678999999887766655555555554 57899999999999865443332222222111 3578999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 015092 267 YGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 267 ~g~gv~~L~~~l~~~l~~ 284 (413)
+|.|+++++++|.+.+.+
T Consensus 178 ~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 178 KKQGIDELRAAIAKWLAE 195 (196)
T ss_pred CCCCHHHHHHHHHHHhcC
Confidence 999999999999988764
No 62
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.84 E-value=5.2e-20 Score=162.15 Aligned_cols=155 Identities=19% Similarity=0.200 Sum_probs=101.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+++|.+|||||||+++|++..+. ....+++.+..... +......+.+|||||. ..+..+ ....+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~--~~~~~~-------~~~~~~ 70 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQ--EEFSAM-------RDQYMR 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCc--ccchHH-------HHHHHh
Confidence 7999999999999999999987764 23333443332222 2233467889999995 333332 233477
Q ss_pred cccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCCC
Q 015092 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
.+|++++|+|+++.. .....+...+.+.. ..+.|+++|+||+|+....... .....+....+ .+++++||++|.|
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 149 (164)
T smart00173 71 TGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWG-CPFLETSAKERVN 149 (164)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcC-CEEEEeecCCCCC
Confidence 899999999998653 22222222222211 1478999999999997532211 11222222223 5899999999999
Q ss_pred HHHHHHHHHhhCC
Q 015092 271 VEDIRDWILTKLP 283 (413)
Q Consensus 271 v~~L~~~l~~~l~ 283 (413)
+++++++|.+.+.
T Consensus 150 i~~l~~~l~~~~~ 162 (164)
T smart00173 150 VDEAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
No 63
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.84 E-value=1e-19 Score=159.95 Aligned_cols=157 Identities=21% Similarity=0.196 Sum_probs=104.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceee-eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~-vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
.+|+++|++|||||||+|+|++.++.. ..+..+.+.......+...+..+.+|||||. ..+.. .....++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~--~~~~~-------~~~~~~~ 72 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ--ERYRS-------LAPMYYR 72 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch--HHHHH-------HHHHHhc
Confidence 379999999999999999999988653 2223332222222233444567899999993 33222 2334578
Q ss_pred cccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChh--hHHHHHHHHHhcCCCccEEEcccCCCCC
Q 015092 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
.+|++++|+|++++. .....++..+........|+++|+||+|+.... ............ + .+++++||++|.|
T Consensus 73 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~~~ 150 (163)
T cd01860 73 GAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADEN-G-LLFFETSAKTGEN 150 (163)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHc-C-CEEEEEECCCCCC
Confidence 899999999998653 223333333333322568999999999987322 122222223322 3 5799999999999
Q ss_pred HHHHHHHHHhhCC
Q 015092 271 VEDIRDWILTKLP 283 (413)
Q Consensus 271 v~~L~~~l~~~l~ 283 (413)
+.+++++|.+.+|
T Consensus 151 v~~l~~~l~~~l~ 163 (163)
T cd01860 151 VNELFTEIAKKLP 163 (163)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998763
No 64
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.84 E-value=6.3e-20 Score=162.31 Aligned_cols=156 Identities=13% Similarity=0.162 Sum_probs=102.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCce--EEEEEEE-EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT--RHRILGI-CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt--~~~~~~~-~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
.+|+++|.+|||||||+++|.+.++... ...+. ......+ .......+.+|||||. ..+..+ ....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~--~~~~~~-------~~~~ 70 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSA--FVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQ--ERYRTI-------TTAY 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEECCEEEEEEEEECCCh--HHHHHH-------HHHH
Confidence 3799999999999999999998876421 11121 1111222 2233467999999994 333322 3455
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccCCCC
Q 015092 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
++.+|++++|+|+++.. .....|+..+.+......|+++|+||+|+.+.... ......+....+ .+++++||++|.
T Consensus 71 ~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (165)
T cd01865 71 YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLG-FEFFEASAKENI 149 (165)
T ss_pred ccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcC-CEEEEEECCCCC
Confidence 88999999999987643 22333333332222246899999999999754321 111222222233 379999999999
Q ss_pred CHHHHHHHHHhhCC
Q 015092 270 GVEDIRDWILTKLP 283 (413)
Q Consensus 270 gv~~L~~~l~~~l~ 283 (413)
|+++|+++|.+.+.
T Consensus 150 gv~~l~~~l~~~~~ 163 (165)
T cd01865 150 NVKQVFERLVDIIC 163 (165)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987653
No 65
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.84 E-value=8.9e-20 Score=160.40 Aligned_cols=155 Identities=20% Similarity=0.211 Sum_probs=104.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.+|+++|.+|+|||||++++++..+ ++...+++.......+..+ ...+.+|||||. ..+..+ ...++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~ 71 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQ--EEFSAM-------REQYM 71 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCC--cchhHH-------HHHHH
Confidence 4899999999999999999998765 3455555554433333333 357889999995 333322 33457
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
..+|++++|+|+++.. .....++....+.. ..+.|+++|+||+|+.....+. .....+....+ .+++++||++|.
T Consensus 72 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 150 (164)
T cd04145 72 RTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLK-IPYIETSAKDRL 150 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcC-CcEEEeeCCCCC
Confidence 7899999999998753 22333333332211 1578999999999997543221 11222222223 389999999999
Q ss_pred CHHHHHHHHHhhC
Q 015092 270 GVEDIRDWILTKL 282 (413)
Q Consensus 270 gv~~L~~~l~~~l 282 (413)
|++++++.|.+.+
T Consensus 151 ~i~~l~~~l~~~~ 163 (164)
T cd04145 151 NVDKAFHDLVRVI 163 (164)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999998764
No 66
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.84 E-value=7e-20 Score=160.93 Aligned_cols=155 Identities=18% Similarity=0.179 Sum_probs=102.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.+|+++|.+|||||||+++++...+. ....+|+.+.....+..+ ...+.+|||||. ..+..+ ...++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGT--EQFTAM-------RDLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCc--cccchH-------HHHHh
Confidence 48999999999999999999987653 334444433333333333 356789999994 333333 23347
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
+.+|++++|+|+++.. .....++....+.. ..+.|+++|+||+|+.....+. .....+....+ .+++++||++|.
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (163)
T cd04136 71 KNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWG-CPFYETSAKSKI 149 (163)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcC-CeEEEecCCCCC
Confidence 8999999999998653 22233332222211 1578999999999986533221 11222222223 589999999999
Q ss_pred CHHHHHHHHHhhC
Q 015092 270 GVEDIRDWILTKL 282 (413)
Q Consensus 270 gv~~L~~~l~~~l 282 (413)
|+.+++++|.+.+
T Consensus 150 ~v~~l~~~l~~~~ 162 (163)
T cd04136 150 NVDEVFADLVRQI 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998754
No 67
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.83 E-value=9.2e-20 Score=161.60 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=101.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeee-eCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~v-s~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
.+|+++|.+|||||||++++.+..+... .+..+.+.......+......+.+|||||. ..+..+ ....++
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~--~~~~~~-------~~~~~~ 74 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ--ERFRTI-------TTAYYR 74 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCch--HHHHHH-------HHHHhC
Confidence 5899999999999999999998876421 111121111111122233357899999994 333322 334578
Q ss_pred cccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCccEEEcccCCCCC
Q 015092 195 NADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
.||++|+|+|++++.. ....++....+....+.|+++|+||+|+.....+ ......... .+ .+++++||++|.|
T Consensus 75 ~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~~ 152 (167)
T cd01867 75 GAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADE-YG-IKFLETSAKANIN 152 (167)
T ss_pred CCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHH-cC-CEEEEEeCCCCCC
Confidence 9999999999976532 2333333332222257899999999999743221 122222222 22 4799999999999
Q ss_pred HHHHHHHHHhhC
Q 015092 271 VEDIRDWILTKL 282 (413)
Q Consensus 271 v~~L~~~l~~~l 282 (413)
+++++.+|.+.+
T Consensus 153 v~~~~~~i~~~~ 164 (167)
T cd01867 153 VEEAFFTLAKDI 164 (167)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 68
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.83 E-value=9.3e-20 Score=159.95 Aligned_cols=151 Identities=19% Similarity=0.232 Sum_probs=99.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCce--eeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKL--SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~--~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+++|.+|||||||+++|.+... ....++.+.+. ..+..++..+.+|||||. ..+.. .+..++.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~----~~~~~~~~~~~l~Dt~G~--~~~~~-------~~~~~~~ 67 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV----ESFEKGNLSFTAFDMSGQ--GKYRG-------LWEHYYK 67 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce----EEEEECCEEEEEEECCCC--HhhHH-------HHHHHHc
Confidence 489999999999999999998643 22233333322 223456788999999994 33322 2344578
Q ss_pred cccEEEEEeeCCCCCc--hHHHHHHHHcccc---CCCCCEEEEEecCCCCChhhHHHHHHHHH--h-cCCCccEEEcccC
Q 015092 195 NADCIVVLVDACKAPE--RIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIAKKLEWYE--K-FTDVDEVIPVSAK 266 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~---~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~-~~~~~~v~~iSA~ 266 (413)
.+|++|+|+|++++.. ....++...++.. ..+.|+++|+||+|+............+. . .....+++++||+
T Consensus 68 ~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~ 147 (162)
T cd04157 68 NIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNAL 147 (162)
T ss_pred cCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCC
Confidence 9999999999987542 2223333333321 14799999999999975432222222211 1 1112358999999
Q ss_pred CCCCHHHHHHHHHh
Q 015092 267 YGHGVEDIRDWILT 280 (413)
Q Consensus 267 ~g~gv~~L~~~l~~ 280 (413)
+|.|+++++++|.+
T Consensus 148 ~g~gv~~~~~~l~~ 161 (162)
T cd04157 148 TGEGLDEGVQWLQA 161 (162)
T ss_pred CCCchHHHHHHHhc
Confidence 99999999999864
No 69
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4.3e-20 Score=161.69 Aligned_cols=164 Identities=23% Similarity=0.261 Sum_probs=118.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeee-eCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~v-s~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
+..+|+++|..+||||||+-++....+... .++.|..-......+......+.+|||+| ++.++.+ ...+
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAG--QERy~sl-------apMY 74 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAG--QERYHSL-------APMY 74 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCC--ccccccc-------ccce
Confidence 456899999999999999999998887532 33333333332222333347889999999 5667766 4556
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCC
Q 015092 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
+++|+++|+|+|+++.. .....|+.++-+...+++-+.||+||+|+...+.+. +....+....+ ..+|++||++|.
T Consensus 75 yRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~g-ll~~ETSAKTg~ 153 (200)
T KOG0092|consen 75 YRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQG-LLFFETSAKTGE 153 (200)
T ss_pred ecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcC-CEEEEEeccccc
Confidence 99999999999998753 556677777766655566677899999998743332 22233333333 378999999999
Q ss_pred CHHHHHHHHHhhCCCCCC
Q 015092 270 GVEDIRDWILTKLPLGPA 287 (413)
Q Consensus 270 gv~~L~~~l~~~l~~~~~ 287 (413)
|+++++..|.+.+|....
T Consensus 154 Nv~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 154 NVNEIFQAIAEKLPCSDP 171 (200)
T ss_pred CHHHHHHHHHHhccCccc
Confidence 999999999999986543
No 70
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.83 E-value=4.8e-20 Score=169.81 Aligned_cols=156 Identities=23% Similarity=0.194 Sum_probs=107.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeee------------------------------CCCCceEEEEEEEEeCCCeeEE
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT------------------------------NKPQTTRHRILGICSGPEYQMI 166 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs------------------------------~~~~tt~~~~~~~~~~~~~~~~ 166 (413)
+|+|+|++|+|||||+|+|+.....+.+ ...++|++.....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999865544331 1267788877777888899999
Q ss_pred EEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCC-CCEEEEEecCCCCChh--h
Q 015092 167 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLIKPG--E 243 (413)
Q Consensus 167 l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~-~p~ilV~NK~Dl~~~~--~ 243 (413)
+|||||+.. +...+..++..+|++|+|+|++.+..........+++. .+ .++|+|+||+|+.... .
T Consensus 81 liDTpG~~~---------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~--~~~~~iIvviNK~D~~~~~~~~ 149 (208)
T cd04166 81 IADTPGHEQ---------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL--LGIRHVVVAVNKMDLVDYSEEV 149 (208)
T ss_pred EEECCcHHH---------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH--cCCCcEEEEEEchhcccCCHHH
Confidence 999999522 22334456789999999999998876655555554444 34 4578899999997421 1
Q ss_pred HHHH---HHHHHhcCC--CccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCC
Q 015092 244 IAKK---LEWYEKFTD--VDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYP 290 (413)
Q Consensus 244 ~~~~---~~~~~~~~~--~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~ 290 (413)
.... ...+....+ ..+++++||++|.|+.+. .+..+|++.
T Consensus 150 ~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~-------~~~~~w~~g 194 (208)
T cd04166 150 FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR-------SENMPWYSG 194 (208)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC-------CCCCCCCCC
Confidence 1111 122222222 246899999999999853 345667764
No 71
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.83 E-value=1.3e-19 Score=160.35 Aligned_cols=153 Identities=22% Similarity=0.241 Sum_probs=98.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceE--EEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR--HRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~--~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.+|+++|.+|||||||++++++..+.. ....+.. .............+.+|||||. ..+..+ ...++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRE--SYIPTIEDTYRQVISCSKNICTLQITDTTGS--HQFPAM-------QRLSI 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--CcCCcchheEEEEEEECCEEEEEEEEECCCC--CcchHH-------HHHHh
Confidence 379999999999999999999877642 1111111 1111223334567899999995 333322 23346
Q ss_pred ccccEEEEEeeCCCCCc--hHHHHHHHHccc----cCCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCccEEEcccC
Q 015092 194 INADCIVVLVDACKAPE--RIDEILEEGVGD----HKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAK 266 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~----~~~~~p~ilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~iSA~ 266 (413)
..+|++|+|+|.++... ....++ ..++. ...+.|+++|+||+|+.....+.. ....+..... .+++++||+
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~-~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~SA~ 148 (165)
T cd04140 71 SKGHAFILVYSVTSKQSLEELKPIY-ELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWN-CAFMETSAK 148 (165)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHH-HHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhC-CcEEEeecC
Confidence 78999999999987542 222222 22221 115689999999999965333221 1122222222 478999999
Q ss_pred CCCCHHHHHHHHHhh
Q 015092 267 YGHGVEDIRDWILTK 281 (413)
Q Consensus 267 ~g~gv~~L~~~l~~~ 281 (413)
+|.|+++++++|.++
T Consensus 149 ~g~~v~~~f~~l~~~ 163 (165)
T cd04140 149 TNHNVQELFQELLNL 163 (165)
T ss_pred CCCCHHHHHHHHHhc
Confidence 999999999999865
No 72
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.83 E-value=1e-19 Score=161.53 Aligned_cols=158 Identities=20% Similarity=0.206 Sum_probs=103.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeC-CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~-~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
.+|+++|.+|||||||++++++..+....+ ..+.+..............+.+|||||. ..+. .....+++
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~-------~~~~~~~~ 75 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ--ESFR-------SITRSYYR 75 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc--HHHH-------HHHHHHhc
Confidence 489999999999999999999887653322 2222222222223333467899999994 3322 22445578
Q ss_pred cccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCCCH
Q 015092 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGV 271 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~gv 271 (413)
.+|++|+|+|++++. .....++.+..+...++.|+++|+||+|+.....+. .....+....+ .+++++||++|.|+
T Consensus 76 ~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i 154 (168)
T cd01866 76 GAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHG-LIFMETSAKTASNV 154 (168)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 999999999998643 233334433322222578999999999997432211 11222222222 47999999999999
Q ss_pred HHHHHHHHhhCC
Q 015092 272 EDIRDWILTKLP 283 (413)
Q Consensus 272 ~~L~~~l~~~l~ 283 (413)
++++.++.+.+.
T Consensus 155 ~~~~~~~~~~~~ 166 (168)
T cd01866 155 EEAFINTAKEIY 166 (168)
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 73
>PLN03118 Rab family protein; Provisional
Probab=99.83 E-value=9e-20 Score=168.25 Aligned_cols=165 Identities=19% Similarity=0.190 Sum_probs=107.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
...+|+|+|++|||||||+++|++..+....++.+.+.......+......+.+|||||. ..+..+ ...++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~~~ 83 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQ--ERFRTL-------TSSYY 83 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHHHH
Confidence 345899999999999999999998876543333333222222223333468899999994 333333 33457
Q ss_pred ccccEEEEEeeCCCCCch--HHHHHHHHcccc--CCCCCEEEEEecCCCCChhhHH--HHHHHHHhcCCCccEEEcccCC
Q 015092 194 INADCIVVLVDACKAPER--IDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~~~--~~~~l~~~l~~~--~~~~p~ilV~NK~Dl~~~~~~~--~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
+.+|++|+|+|+++.... ....+...+... ..+.|+++|+||+|+.....+. ........ .+ .++|++||++
T Consensus 84 ~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~-~~-~~~~e~SAk~ 161 (211)
T PLN03118 84 RNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKE-HG-CLFLECSAKT 161 (211)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-cC-CEEEEEeCCC
Confidence 899999999999875321 222222222211 1467999999999997543321 11222222 22 4789999999
Q ss_pred CCCHHHHHHHHHhhCCCCCCCC
Q 015092 268 GHGVEDIRDWILTKLPLGPAYY 289 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~~~~~~~ 289 (413)
|.|+++++++|...+...+..+
T Consensus 162 ~~~v~~l~~~l~~~~~~~~~~~ 183 (211)
T PLN03118 162 RENVEQCFEELALKIMEVPSLL 183 (211)
T ss_pred CCCHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999887655433
No 74
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.83 E-value=1.3e-19 Score=162.36 Aligned_cols=155 Identities=19% Similarity=0.161 Sum_probs=103.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.+|+++|.+|||||||++++....+. ..+.+|........+..++ ..+.+|||||. +.+..+ ...++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ--EDYDRL-------RPLSY 70 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEECCCc--cchhhh-------hhhhc
Confidence 37999999999999999999987763 3444444333322223333 67889999994 333333 23357
Q ss_pred ccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-------------HHHHHHHhcCCCc
Q 015092 194 INADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTDVD 258 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-------------~~~~~~~~~~~~~ 258 (413)
..+|++|+|+|.++... .....+...++....+.|+++|+||+|+....... +....+....+..
T Consensus 71 ~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~ 150 (175)
T cd01874 71 PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAV 150 (175)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCc
Confidence 89999999999987542 22222333333322578999999999986432211 1111222223345
Q ss_pred cEEEcccCCCCCHHHHHHHHHhh
Q 015092 259 EVIPVSAKYGHGVEDIRDWILTK 281 (413)
Q Consensus 259 ~v~~iSA~~g~gv~~L~~~l~~~ 281 (413)
.++++||++|.|++++++.++..
T Consensus 151 ~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 151 KYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred EEEEecCCCCCCHHHHHHHHHHH
Confidence 79999999999999999998864
No 75
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.83 E-value=1.5e-19 Score=158.50 Aligned_cols=152 Identities=20% Similarity=0.233 Sum_probs=100.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
+|+++|.+|||||||+++|.+..+....++.+.+ ...+.......+.+|||||.. .. ...+...+..+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~l~i~D~~G~~--~~-------~~~~~~~~~~~ 68 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFN---VEMLQLEKHLSLTVWDVGGQE--KM-------RTVWKCYLENT 68 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcc---eEEEEeCCceEEEEEECCCCH--hH-------HHHHHHHhccC
Confidence 4899999999999999999988765332222222 122222345789999999952 22 22244457899
Q ss_pred cEEEEEeeCCCCC--chHHHHHHHHccccC-CCCCEEEEEecCCCCChhhHHHHHHHHH--hcC--CCccEEEcccCCCC
Q 015092 197 DCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYE--KFT--DVDEVIPVSAKYGH 269 (413)
Q Consensus 197 D~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~--~~~~v~~iSA~~g~ 269 (413)
|++++|+|++++. .....++.+.++... .+.|+++|+||+|+.......+....+. ... ...+++++||++|.
T Consensus 69 ~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (160)
T cd04156 69 DGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGE 148 (160)
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCC
Confidence 9999999998764 333444444443311 4799999999999864322222222221 111 12368999999999
Q ss_pred CHHHHHHHHHh
Q 015092 270 GVEDIRDWILT 280 (413)
Q Consensus 270 gv~~L~~~l~~ 280 (413)
|+++++++|.+
T Consensus 149 gv~~~~~~i~~ 159 (160)
T cd04156 149 GLAEAFRKLAS 159 (160)
T ss_pred ChHHHHHHHhc
Confidence 99999999864
No 76
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.83 E-value=1.5e-19 Score=159.52 Aligned_cols=156 Identities=20% Similarity=0.230 Sum_probs=102.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.+|+++|.+|||||||+++|++..+...+ .+..+.+.....+..++ ..+.+|||||. ..+..+ ....+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~~-------~~~~~ 73 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDS-KSTIGVEFATRSIQIDGKTIKAQIWDTAGQ--ERYRAI-------TSAYY 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEeCCCh--HHHHHH-------HHHHH
Confidence 48999999999999999999988765322 23333222222233333 57889999994 333322 33457
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccCCCCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
..+|++|+|+|+++.. .....++.........+.|+++|+||+|+...... .+....+....+ .+++++||++|.|
T Consensus 74 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 152 (165)
T cd01868 74 RGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNG-LSFIETSALDGTN 152 (165)
T ss_pred CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcC-CEEEEEECCCCCC
Confidence 8999999999998643 22333433332322246899999999998653221 111222222222 4799999999999
Q ss_pred HHHHHHHHHhhC
Q 015092 271 VEDIRDWILTKL 282 (413)
Q Consensus 271 v~~L~~~l~~~l 282 (413)
+++++++|...+
T Consensus 153 v~~l~~~l~~~i 164 (165)
T cd01868 153 VEEAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 77
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.83 E-value=1.1e-19 Score=189.97 Aligned_cols=202 Identities=18% Similarity=0.191 Sum_probs=134.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCe-eEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015092 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~-~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
.|+++|+++|++|+|||||+++|.+.++. ....++.|.+.....+.+.+. .+.||||||+ ..+..+ ..+
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGh--e~F~~~-------r~r 154 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGH--EAFTSM-------RAR 154 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcc-cccCCceeecceEEEEEECCCcEEEEEECCCC--cchhhH-------HHh
Confidence 37789999999999999999999988765 344566776655555555444 8999999995 344333 234
Q ss_pred hcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCCh--hhHHHHHHHH----HhcCCCccEEEccc
Q 015092 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWY----EKFTDVDEVIPVSA 265 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~--~~~~~~~~~~----~~~~~~~~v~~iSA 265 (413)
.+..+|++++|+|++++...++...+..++. .+.|+++++||+|+... +.+....... ..+.+..+++++||
T Consensus 155 ga~~aDiaILVVda~dgv~~qT~e~i~~~~~--~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSA 232 (587)
T TIGR00487 155 GAKVTDIVVLVVAADDGVMPQTIEAISHAKA--ANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSA 232 (587)
T ss_pred hhccCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEEC
Confidence 5789999999999998887776666666555 68999999999999642 2222222111 11222347899999
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhh-cCCCCCceeEEEEEEEEecCCCee
Q 015092 266 KYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQ-YRNEVPYACQVNVVSYKTRPTAKD 338 (413)
Q Consensus 266 ~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~-~~~eipys~~v~v~~~~~~~~~~~ 338 (413)
++|.|+++|+++|.....-..... ..+.|.+.. +++. ..+..|..+.+.+..|+.+.|..+
T Consensus 233 ktGeGI~eLl~~I~~~~~~~~l~~----~~~~~~~~~--------V~ev~~~~g~G~v~~~~V~~GtL~~Gd~i 294 (587)
T TIGR00487 233 LTGDGIDELLDMILLQSEVEELKA----NPNGQASGV--------VIEAQLDKGRGPVATVLVQSGTLRVGDIV 294 (587)
T ss_pred CCCCChHHHHHhhhhhhhhccccC----CCCCCceeE--------EEEEEEeCCCcEEEEEEEEeCEEeCCCEE
Confidence 999999999999864311000000 001121111 1111 235678888999999998876443
No 78
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.83 E-value=1.9e-19 Score=180.23 Aligned_cols=191 Identities=23% Similarity=0.303 Sum_probs=138.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeC------------------------CCeeEEEEeCC
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG------------------------PEYQMILYDTP 171 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~------------------------~~~~~~l~Dtp 171 (413)
.+|+|||.||||||||+|+|++.... ++++|++|.++..+.... ...++.++|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~-~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVE-IANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccc-ccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 37999999999999999999998764 688999999888876431 12568899999
Q ss_pred CCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCC------------chHH------H-------------------
Q 015092 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP------------ERID------E------------------- 214 (413)
Q Consensus 172 G~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~------------~~~~------~------------------- 214 (413)
|+...... ...+...+...++.||++++|+|+.... .+.. .
T Consensus 81 Gl~~ga~~--g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~ 158 (396)
T PRK09602 81 GLVPGAHE--GRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSR 158 (396)
T ss_pred CcCCCccc--hhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 98642211 1223345566688999999999997210 0000 0
Q ss_pred ---------------H----------HHHHccc----------------------cCCCCCEEEEEecCCCCChhhHHHH
Q 015092 215 ---------------I----------LEEGVGD----------------------HKDKLPILLVLNKKDLIKPGEIAKK 247 (413)
Q Consensus 215 ---------------~----------l~~~l~~----------------------~~~~~p~ilV~NK~Dl~~~~~~~~~ 247 (413)
. +.+.+.. ....+|+++|+||+|+......
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~--- 235 (396)
T PRK09602 159 KAQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEEN--- 235 (396)
T ss_pred HHhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHH---
Confidence 0 0011110 1135899999999998643221
Q ss_pred HHHHHhcCCCccEEEcccCCCCCHHH-HHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcC
Q 015092 248 LEWYEKFTDVDEVIPVSAKYGHGVED-IRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYR 316 (413)
Q Consensus 248 ~~~~~~~~~~~~v~~iSA~~g~gv~~-L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~ 316 (413)
...+... ++..++++||+.+.+++. |++.+.+++|.++++|+.+++++++.+ ++|++| ++|..+.
T Consensus 236 l~~i~~~-~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r--~~E~IR-k~l~~~g 301 (396)
T PRK09602 236 IERLKEE-KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKK--ALEYIR-EVLKKYG 301 (396)
T ss_pred HHHHHhc-CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHH--HHHHHH-HHHHHhC
Confidence 1222222 456799999999999999 899999999999999999999999988 899999 8877655
No 79
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.83 E-value=1.6e-19 Score=165.74 Aligned_cols=160 Identities=23% Similarity=0.306 Sum_probs=102.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcee--eeeCCCCceEEEEEEEEe---------------------------CCC-----
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICS---------------------------GPE----- 162 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~--~vs~~~~tt~~~~~~~~~---------------------------~~~----- 162 (413)
+|+++|+.|+|||||+.+|.+.... ......+.|.......+. ..+
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 6999999999999999999765210 000000111100000000 012
Q ss_pred -eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCC-CchHHHHHHHHccccCCCCCEEEEEecCCCCC
Q 015092 163 -YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (413)
Q Consensus 163 -~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~-~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~ 240 (413)
.++.||||||+ . .+...+..++..+|++++|+|++.+ ........+..+... ...|+++|+||+|+..
T Consensus 82 ~~~i~~iDtPG~--~-------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 82 VRHVSFVDCPGH--E-------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-GLKHIIIVQNKIDLVK 151 (203)
T ss_pred ccEEEEEECCCh--H-------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-CCCcEEEEEEchhccC
Confidence 68999999994 2 2455677778899999999999874 333333333333331 2357999999999986
Q ss_pred hhhHHHHHHHHHhc-----CCCccEEEcccCCCCCHHHHHHHHHhhCCCCC
Q 015092 241 PGEIAKKLEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (413)
Q Consensus 241 ~~~~~~~~~~~~~~-----~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~ 286 (413)
........+.+... ....+++++||++|.|+++|+++|.+.++++|
T Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 152 EEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred HHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 54433222222221 12357999999999999999999999998764
No 80
>PRK12739 elongation factor G; Reviewed
Probab=99.83 E-value=3.8e-20 Score=198.49 Aligned_cols=231 Identities=16% Similarity=0.098 Sum_probs=154.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCcee-----eee------------CCCCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-----IVT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~-----~vs------------~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (413)
+-.+|+|+|++|+|||||+|+|+..... .+. ...+.|.+.....+.+++.+++|+||||+.+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~- 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD- 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH-
Confidence 3458999999999999999999753211 112 2456777776777788999999999999643
Q ss_pred hhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhh---HHHHHHHHH-
Q 015092 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYE- 252 (413)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~- 252 (413)
+...+..++..+|++|+|+|+..+...+++.++..+.. .++|.|+++||+|+..... +......+.
T Consensus 86 --------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~--~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~ 155 (691)
T PRK12739 86 --------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADK--YGVPRIVFVNKMDRIGADFFRSVEQIKDRLGA 155 (691)
T ss_pred --------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 23357778899999999999999988888888887776 6899999999999974310 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 015092 253 -------------------------------------------------------------------------------- 252 (413)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (413)
T Consensus 156 ~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~ 235 (691)
T PRK12739 156 NAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEIT 235 (691)
T ss_pred CceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCC
Confidence
Q ss_pred ------------hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCC----------CccCCchhhHHHHHHHHHH
Q 015092 253 ------------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPK----------DIVSEHPERFFVGEIIREK 310 (413)
Q Consensus 253 ------------~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~----------~~~t~~~~~~~~~eiiRek 310 (413)
....+.|+++.||.++.|++.|++.|..++|.+....+. ......+...+++.++ |
T Consensus 236 ~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~Vf--K 313 (691)
T PRK12739 236 EEEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAF--K 313 (691)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEE--E
Confidence 011335789999999999999999999999865321100 0001112222233232 1
Q ss_pred HHhhcCCCCCceeEEEEEEEEecCCCeeEEEEEEEEeeCCcceEEeecC
Q 015092 311 IFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKG 359 (413)
Q Consensus 311 i~~~~~~eipys~~v~v~~~~~~~~~~~~i~~~~~~~r~~~~~i~iG~~ 359 (413)
+. ..+..+..+.++|.+|+.++|..+++......++.++.+.+.|..
T Consensus 314 ~~--~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~ 360 (691)
T PRK12739 314 IM--TDPFVGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANK 360 (691)
T ss_pred ee--eCCCCCeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCC
Confidence 11 256678899999999999987655543322233444555555543
No 81
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=7.8e-19 Score=175.91 Aligned_cols=158 Identities=20% Similarity=0.219 Sum_probs=127.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeC---CCeeEEEEeCCCCchhhhhhHHHHHHHHH
Q 015092 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~l~~~~~~~~ 189 (413)
.|+|.|+++||.+.|||||++++.+.+++ .....+-|.+.....+.. +...++|+|||| |+.|..++.++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va-~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPG--HeAFt~mRaRG---- 75 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAYQVPLDVIKIPGITFIDTPG--HEAFTAMRARG---- 75 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccc-cccCCceeeEeeeEEEEeccCCCceEEEEcCCc--HHHHHHHHhcC----
Confidence 48899999999999999999999999887 345566777766666655 457899999999 67888777666
Q ss_pred HhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHH------HhcCCCccEEEc
Q 015092 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWY------EKFTDVDEVIPV 263 (413)
Q Consensus 190 ~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~------~~~~~~~~v~~i 263 (413)
..-+|++++|||+.++..+++.+-.+.++. .+.|+++++||+|+.+.+......+.. ..+.+...++++
T Consensus 76 ---a~vtDIaILVVa~dDGv~pQTiEAI~hak~--a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~Vpv 150 (509)
T COG0532 76 ---ASVTDIAILVVAADDGVMPQTIEAINHAKA--AGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPV 150 (509)
T ss_pred ---CccccEEEEEEEccCCcchhHHHHHHHHHH--CCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEe
Confidence 678999999999999999999998888888 899999999999998543322211111 124455688999
Q ss_pred ccCCCCCHHHHHHHHHhhC
Q 015092 264 SAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 264 SA~~g~gv~~L~~~l~~~l 282 (413)
||++|+|+++|+..|.-..
T Consensus 151 SA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 151 SAKTGEGIDELLELILLLA 169 (509)
T ss_pred eccCCCCHHHHHHHHHHHH
Confidence 9999999999999987543
No 82
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.83 E-value=2.2e-19 Score=158.18 Aligned_cols=151 Identities=18% Similarity=0.203 Sum_probs=99.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
+|+++|.+|||||||++++....+. . ...|+.... ..+.....++.+|||||. ..+. ..+..++..|
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~--~-~~pt~g~~~-~~~~~~~~~~~l~D~~G~--~~~~-------~~~~~~~~~a 68 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV--T-TIPTIGFNV-ETVEYKNISFTVWDVGGQ--DKIR-------PLWRHYFQNT 68 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc--c-cCCCCCcce-EEEEECCEEEEEEECCCC--HhHH-------HHHHHHhcCC
Confidence 7999999999999999999765553 2 222222222 234456788999999995 2222 2344568999
Q ss_pred cEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHh--c-CCCccEEEcccCCCCC
Q 015092 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK--F-TDVDEVIPVSAKYGHG 270 (413)
Q Consensus 197 D~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~--~-~~~~~v~~iSA~~g~g 270 (413)
|++|||+|+++.. .....++...+... ....|+++|+||+|+.......+....+.. . .....++++||++|.|
T Consensus 69 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~g 148 (159)
T cd04150 69 QGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDG 148 (159)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCC
Confidence 9999999998642 33344444444321 135899999999999643222222222211 1 1123578999999999
Q ss_pred HHHHHHHHHh
Q 015092 271 VEDIRDWILT 280 (413)
Q Consensus 271 v~~L~~~l~~ 280 (413)
+++++++|.+
T Consensus 149 v~~~~~~l~~ 158 (159)
T cd04150 149 LYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 83
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.83 E-value=1.2e-19 Score=160.11 Aligned_cols=155 Identities=18% Similarity=0.185 Sum_probs=103.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.+|+++|.+|||||||+++++...+. ...++|+.......+..+ ...+.+|||||. ..+..+. ..++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~-------~~~~ 70 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT--EQFTAMR-------DLYM 70 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEECCCc--ccchhHH-------HHHH
Confidence 47999999999999999999866542 344455544333333333 356779999994 3344332 3347
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
..+|++++|+|.++.. .....++....+.. ..+.|+++|+||+|+.....+. .....+....+ .+++++||++|.
T Consensus 71 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (164)
T cd04175 71 KNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWG-CAFLETSAKAKI 149 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhC-CEEEEeeCCCCC
Confidence 8899999999987543 23333444333221 2578999999999996432221 11122222222 489999999999
Q ss_pred CHHHHHHHHHhhC
Q 015092 270 GVEDIRDWILTKL 282 (413)
Q Consensus 270 gv~~L~~~l~~~l 282 (413)
|+++++.+|.+.+
T Consensus 150 ~v~~~~~~l~~~l 162 (164)
T cd04175 150 NVNEIFYDLVRQI 162 (164)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 84
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.83 E-value=1.9e-19 Score=163.92 Aligned_cols=157 Identities=20% Similarity=0.226 Sum_probs=103.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeee---------------CCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT---------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs---------------~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 180 (413)
.+|+++|++|+|||||+++|++....... ...++|.......+.+++..+.+|||||+. .+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~--~~-- 78 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHA--DF-- 78 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcH--HH--
Confidence 37999999999999999999863211111 123455554445566778899999999953 22
Q ss_pred HHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhh---HHHHHHHHHhcC--
Q 015092 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFT-- 255 (413)
Q Consensus 181 l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~-- 255 (413)
...+..+++.+|++++|+|++++......+++..+.. .+.|+++|+||+|+..... .......+....
T Consensus 79 -----~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 151 (194)
T cd01891 79 -----GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGAT 151 (194)
T ss_pred -----HHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCc
Confidence 2334556789999999999988765555554444444 5789999999999964321 222223322110
Q ss_pred ---CCccEEEcccCCCCCH----------HHHHHHHHhhCC
Q 015092 256 ---DVDEVIPVSAKYGHGV----------EDIRDWILTKLP 283 (413)
Q Consensus 256 ---~~~~v~~iSA~~g~gv----------~~L~~~l~~~l~ 283 (413)
...+++++||++|.|+ .+|++.|.+++|
T Consensus 152 ~~~~~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (194)
T cd01891 152 EEQLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVP 192 (194)
T ss_pred cccCccCEEEeehhccccccccccchhhHHHHHHHHHhcCC
Confidence 1247999999999766 345555555554
No 85
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.83 E-value=1.4e-19 Score=159.35 Aligned_cols=154 Identities=18% Similarity=0.219 Sum_probs=101.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEE--EEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+++|.+|||||||+|+|++..+.. ...+....+... .........+.+|||||. ..+.. .....+.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~~~ 71 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGH--PEYLE-------VRNEFYK 71 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCeEEEEEEEECCcc--HHHHH-------HHHHHhc
Confidence 79999999999999999999987642 112222222211 122334578899999995 22222 2334478
Q ss_pred cccEEEEEeeCCCCC--chHHHHHHHHccccC-----CCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCccEEEccc
Q 015092 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-----DKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSA 265 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~-----~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~v~~iSA 265 (413)
.+|++|+|+|++++. .....++..+.+... .+.|+++|+||+|+..... .......... .+ .+++++||
T Consensus 72 ~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa 149 (168)
T cd04119 72 DTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAES-KG-FKYFETSA 149 (168)
T ss_pred cCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHH-cC-CeEEEEEC
Confidence 999999999998753 233344433332211 4689999999999973221 1222222222 23 57999999
Q ss_pred CCCCCHHHHHHHHHhhC
Q 015092 266 KYGHGVEDIRDWILTKL 282 (413)
Q Consensus 266 ~~g~gv~~L~~~l~~~l 282 (413)
++|.|+++++++|.+.+
T Consensus 150 ~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 150 CTGEGVNEMFQTLFSSI 166 (168)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998765
No 86
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.83 E-value=1.4e-19 Score=160.21 Aligned_cols=155 Identities=22% Similarity=0.258 Sum_probs=102.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEE-EE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL-GI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~-~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
.+|+++|++|||||||+++|.+..+. ...+.|+..... .. .......+.+|||||. ..+.. ....+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~ 71 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ--ERFRA-------VTRSY 71 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCcccceeEEEEEEEECCEEEEEEEEECCCc--HHHHH-------HHHHH
Confidence 37999999999999999999987664 333444322221 12 2333457899999994 33322 24455
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCC
Q 015092 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
++.+|++|+|+|++++. .....++.........+.|+++|+||+|+.....+. .....+....+ .+++++||++|.
T Consensus 72 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~ 150 (166)
T cd04122 72 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENG-LLFLECSAKTGE 150 (166)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcC-CEEEEEECCCCC
Confidence 78999999999998754 233344333322222568999999999997543221 12222222222 489999999999
Q ss_pred CHHHHHHHHHhhC
Q 015092 270 GVEDIRDWILTKL 282 (413)
Q Consensus 270 gv~~L~~~l~~~l 282 (413)
|+++++..++..+
T Consensus 151 ~i~e~f~~l~~~~ 163 (166)
T cd04122 151 NVEDAFLETAKKI 163 (166)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999988654
No 87
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.83 E-value=2e-19 Score=161.07 Aligned_cols=156 Identities=20% Similarity=0.198 Sum_probs=103.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+..+|+++|.+|||||||+++|....+. . +.+|+..... .+...+..+.+|||||. ..+.. .+..++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~--~-~~~t~~~~~~-~~~~~~~~l~l~D~~G~--~~~~~-------~~~~~~ 78 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV--T-TIPTIGFNVE-TVTYKNISFTVWDVGGQ--DKIRP-------LWRHYY 78 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC--C-cCCccccceE-EEEECCEEEEEEECCCC--hhhHH-------HHHHHh
Confidence 3468999999999999999999755542 2 2223222222 23456788999999994 33222 244558
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCccEEEcccCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~iSA~~ 267 (413)
..||++|+|+|++++. .....++...++.. ..+.|++||+||+|+.......+....+.. ......++++||++
T Consensus 79 ~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 158 (175)
T smart00177 79 TNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATS 158 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCC
Confidence 9999999999998753 33444554444331 146899999999998653222222222211 11123467899999
Q ss_pred CCCHHHHHHHHHhhC
Q 015092 268 GHGVEDIRDWILTKL 282 (413)
Q Consensus 268 g~gv~~L~~~l~~~l 282 (413)
|.|+++++++|.+.+
T Consensus 159 g~gv~e~~~~l~~~~ 173 (175)
T smart00177 159 GDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998764
No 88
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.83 E-value=1.9e-19 Score=159.14 Aligned_cols=156 Identities=17% Similarity=0.150 Sum_probs=102.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeC--CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.+|+++|.+|||||||++++++..+.. ...+..+.+.....+.. ...++.+|||||. ..+.. .....+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~--~~~~~-------~~~~~~ 72 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ--ERFRT-------ITSSYY 72 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCc--HhHHH-------HHHHHh
Confidence 489999999999999999999877653 22222222222222222 2357899999994 33322 234457
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
+.+|++|+|+|+++.. .....++....+....+.|+++|+||+|+.....+. .....+....+ .+++++||++|.|
T Consensus 73 ~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 151 (166)
T cd01869 73 RGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELG-IPFLETSAKNATN 151 (166)
T ss_pred CcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcC-CeEEEEECCCCcC
Confidence 8999999999998743 233333333222212568999999999986543221 11222222223 4899999999999
Q ss_pred HHHHHHHHHhhC
Q 015092 271 VEDIRDWILTKL 282 (413)
Q Consensus 271 v~~L~~~l~~~l 282 (413)
+++++..|.+.+
T Consensus 152 v~~~~~~i~~~~ 163 (166)
T cd01869 152 VEQAFMTMAREI 163 (166)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 89
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.83 E-value=1.4e-19 Score=190.10 Aligned_cols=200 Identities=25% Similarity=0.284 Sum_probs=131.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceee--------eeC------CCCceEEEEEEEEe-----CCCeeEEEEeCCCCchh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSI--------VTN------KPQTTRHRILGICS-----GPEYQMILYDTPGIIEK 176 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~--------vs~------~~~tt~~~~~~~~~-----~~~~~~~l~DtpG~~~~ 176 (413)
.+++|+|++|+|||||+++|+.....+ +.+ ..|.|.......+. ....+++||||||+.+
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d- 82 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD- 82 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH-
Confidence 379999999999999999998653221 111 12444443222222 2237899999999643
Q ss_pred hhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCC
Q 015092 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (413)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (413)
+...+..++..||++|+|+|++++...++...+..+.. .+.|+++|+||+|+..... ......+....+
T Consensus 83 --------F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--~~ipiIiViNKiDl~~~~~-~~~~~el~~~lg 151 (595)
T TIGR01393 83 --------FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--NDLEIIPVINKIDLPSADP-ERVKKEIEEVIG 151 (595)
T ss_pred --------HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--cCCCEEEEEECcCCCccCH-HHHHHHHHHHhC
Confidence 22335566889999999999998876655444333333 5789999999999864321 112222222222
Q ss_pred C--ccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHh-hcCCCCCceeEEEEEEEEec
Q 015092 257 V--DEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFM-QYRNEVPYACQVNVVSYKTR 333 (413)
Q Consensus 257 ~--~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~-~~~~eipys~~v~v~~~~~~ 333 (413)
. .+++++||++|.|+++|+++|.+.+|.+... .+.|.+.. ++. ...+..|..+.+++.+|+.+
T Consensus 152 ~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~~------~~~pl~~~--------V~~~~~d~~~G~v~~~rV~sG~lk 217 (595)
T TIGR01393 152 LDASEAILASAKTGIGIEEILEAIVKRVPPPKGD------PDAPLKAL--------IFDSHYDNYRGVVALVRVFEGTIK 217 (595)
T ss_pred CCcceEEEeeccCCCCHHHHHHHHHHhCCCCCCC------CCCCeEEE--------EEEEEEeCCCcEEEEEEEECCEEe
Confidence 2 3589999999999999999999999754321 12222211 111 23577899999999999998
Q ss_pred CCCeeEEE
Q 015092 334 PTAKDFIQ 341 (413)
Q Consensus 334 ~~~~~~i~ 341 (413)
.|..+.+.
T Consensus 218 ~Gd~v~~~ 225 (595)
T TIGR01393 218 PGDKIRFM 225 (595)
T ss_pred cCCEEEEe
Confidence 87655443
No 90
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.83 E-value=2.3e-19 Score=161.85 Aligned_cols=161 Identities=18% Similarity=0.200 Sum_probs=101.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEE-EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI-CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~-~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
...+|+++|.+|||||||++++.+..+....++.+.+....... ....+..+.+|||||. ..+.. .+..+
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~-------~~~~~ 72 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ--EKLRP-------LWKSY 72 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCc--HhHHH-------HHHHH
Confidence 34589999999999999999998876542211112122111111 1235678999999994 32222 24445
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHH--hcC--CCccEEEccc
Q 015092 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--KFT--DVDEVIPVSA 265 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~--~~~~v~~iSA 265 (413)
+..||++|+|+|++++. .....++.+..+.. ..+.|+++|+||+|+.............. ... ...+++++||
T Consensus 73 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 152 (183)
T cd04152 73 TRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACA 152 (183)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeec
Confidence 78999999999998752 22222333222211 15789999999999864322222221111 111 1236899999
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 015092 266 KYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 266 ~~g~gv~~L~~~l~~~l~ 283 (413)
++|.|+++++++|.+.+.
T Consensus 153 ~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 153 IIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 999999999999987763
No 91
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.83 E-value=2.4e-19 Score=164.23 Aligned_cols=155 Identities=17% Similarity=0.224 Sum_probs=104.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCc-eEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~t-t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.|+++|.+|||||||++++....+. ..+..| +.+.....+..+ ...+.+|||+| ++.+..+ +..++
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~--~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaG--qe~~~~l-------~~~y~ 70 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC--EACKSGVGVDFKIKTVELRGKKIRLQIWDTAG--QERFNSI-------TSAYY 70 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC--CcCCCcceeEEEEEEEEECCEEEEEEEEeCCC--chhhHHH-------HHHHh
Confidence 6899999999999999999987764 222222 223222233333 37789999999 4444333 45568
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCccEEEcccCCCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
+.||++|+|+|+++.. .....|+. .++.. ..+.|+++|+||+|+.....+.. ....+........+++|||++|.
T Consensus 71 ~~ad~iIlVfDvtd~~Sf~~l~~w~~-~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~ 149 (202)
T cd04120 71 RSAKGIILVYDITKKETFDDLPKWMK-MIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNF 149 (202)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHH-HHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 9999999999998764 33333332 23322 25799999999999965433321 22222222112478999999999
Q ss_pred CHHHHHHHHHhhCC
Q 015092 270 GVEDIRDWILTKLP 283 (413)
Q Consensus 270 gv~~L~~~l~~~l~ 283 (413)
||+++|.+|.+.+.
T Consensus 150 gV~e~F~~l~~~~~ 163 (202)
T cd04120 150 NVDEIFLKLVDDIL 163 (202)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988664
No 92
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.83 E-value=2.5e-19 Score=160.16 Aligned_cols=153 Identities=18% Similarity=0.215 Sum_probs=103.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
..+|+++|++|+|||||+++|.+..+....++.+.+ ...+..++..+.+|||||. ..+ ...+..++.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~l~D~~G~--~~~-------~~~~~~~~~ 81 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSN----VEEIVYKNIRFLMWDIGGQ--ESL-------RSSWNTYYT 81 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc----eEEEEECCeEEEEEECCCC--HHH-------HHHHHHHhh
Confidence 358999999999999999999877664333332222 2234456789999999995 222 223445578
Q ss_pred cccEEEEEeeCCCCC--chHHHHHHHHccccC-CCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCccEEEcccCCC
Q 015092 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYG 268 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~iSA~~g 268 (413)
.+|++++|+|++++. .....++...++... .+.|+++|+||+|+.......+....+.. .....+++++||++|
T Consensus 82 ~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g 161 (174)
T cd04153 82 NTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTG 161 (174)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCC
Confidence 999999999998753 223344554443311 46899999999998653222222222211 011236899999999
Q ss_pred CCHHHHHHHHHh
Q 015092 269 HGVEDIRDWILT 280 (413)
Q Consensus 269 ~gv~~L~~~l~~ 280 (413)
.|+++++++|.+
T Consensus 162 ~gi~e~~~~l~~ 173 (174)
T cd04153 162 EGLPEGLDWIAS 173 (174)
T ss_pred CCHHHHHHHHhc
Confidence 999999999875
No 93
>PRK00007 elongation factor G; Reviewed
Probab=99.83 E-value=6.9e-20 Score=196.44 Aligned_cols=234 Identities=17% Similarity=0.118 Sum_probs=156.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCce---ee--ee------------CCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKL---SI--VT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~---~~--vs------------~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~ 177 (413)
-.+|+|+|++|+|||||+|+|+.... .. +. ...++|.+.....+.+.+.+++|+||||+.+
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~-- 87 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD-- 87 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH--
Confidence 34899999999999999999973221 11 22 2556777777777888899999999999643
Q ss_pred hhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhH---HHHHHH----
Q 015092 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI---AKKLEW---- 250 (413)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~---~~~~~~---- 250 (413)
+...+..++..+|++|+|+|+..+...++..++..+.. .++|.++++||+|+...... ....+.
T Consensus 88 -------f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~--~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~ 158 (693)
T PRK00007 88 -------FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADK--YKVPRIAFVNKMDRTGADFYRVVEQIKDRLGAN 158 (693)
T ss_pred -------HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCC
Confidence 22346677889999999999999998888888888777 78999999999998642210 000000
Q ss_pred -----------------------------------------------------------------------H--------
Q 015092 251 -----------------------------------------------------------------------Y-------- 251 (413)
Q Consensus 251 -----------------------------------------------------------------------~-------- 251 (413)
+
T Consensus 159 ~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~ 238 (693)
T PRK00007 159 PVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTE 238 (693)
T ss_pred eeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCH
Confidence 0
Q ss_pred ----------HhcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCC-C----------ccCCchhhHHHHHHHHHH
Q 015092 252 ----------EKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPK-D----------IVSEHPERFFVGEIIREK 310 (413)
Q Consensus 252 ----------~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~-~----------~~t~~~~~~~~~eiiRek 310 (413)
-....+.|+++.||.++.|+..|++.|..++|.+....+. . .....+...+++.++ |
T Consensus 239 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~Vf--K 316 (693)
T PRK00007 239 EEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAF--K 316 (693)
T ss_pred HHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEE--E
Confidence 0011345788999999999999999999999865321100 0 000111222222222 1
Q ss_pred HHhhcCCCCCceeEEEEEEEEecCCCeeEEEEEEEEeeCCcceEEeecCChHH
Q 015092 311 IFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKAL 363 (413)
Q Consensus 311 i~~~~~~eipys~~v~v~~~~~~~~~~~~i~~~~~~~r~~~~~i~iG~~g~~i 363 (413)
+. ..+..+..+.++|.+|+.++|..+++......++.++.+.+.|.....+
T Consensus 317 ~~--~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v 367 (693)
T PRK00007 317 IM--TDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEI 367 (693)
T ss_pred ee--ecCCCCcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccc
Confidence 11 1567799999999999999887665432222334445555555544333
No 94
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.82 E-value=2.1e-19 Score=157.78 Aligned_cols=151 Identities=20% Similarity=0.230 Sum_probs=99.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
+|+++|++|+|||||+++|....+... ..|..... ..+...+..+.+|||||.. .+. ..+..++..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~---~~t~~~~~-~~~~~~~~~~~i~Dt~G~~--~~~-------~~~~~~~~~~ 67 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT---IPTIGFNV-ETVTYKNLKFQVWDLGGQT--SIR-------PYWRCYYSNT 67 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc---CCccCcCe-EEEEECCEEEEEEECCCCH--HHH-------HHHHHHhcCC
Confidence 589999999999999999977665321 12211111 2334567889999999952 222 2345568899
Q ss_pred cEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHhc---CCCccEEEcccCCCCC
Q 015092 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKYGHG 270 (413)
Q Consensus 197 D~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~g~g 270 (413)
|++|+|+|+++.. .....++...++.. ..+.|+++|+||+|+.+..........+... ....+++++||++|.|
T Consensus 68 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd04151 68 DAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEG 147 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCC
Confidence 9999999988643 22234444443321 1468999999999997543222222222110 1123699999999999
Q ss_pred HHHHHHHHHh
Q 015092 271 VEDIRDWILT 280 (413)
Q Consensus 271 v~~L~~~l~~ 280 (413)
+++++++|.+
T Consensus 148 i~~l~~~l~~ 157 (158)
T cd04151 148 LDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHhc
Confidence 9999999874
No 95
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.82 E-value=6.4e-20 Score=189.87 Aligned_cols=236 Identities=19% Similarity=0.144 Sum_probs=152.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceee-----e----------eCCC------CceEEEEEEEEeCCCeeEEEEeCCC
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----V----------TNKP------QTTRHRILGICSGPEYQMILYDTPG 172 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~-----v----------s~~~------~tt~~~~~~~~~~~~~~~~l~DtpG 172 (413)
+..+|+|+|++|+|||||+++|+.....+ + ++.. +.|.......+.+++..+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 34489999999999999999997422110 1 1100 1122222234667889999999999
Q ss_pred CchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhh---HHHHHH
Q 015092 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLE 249 (413)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~ 249 (413)
+.+ +...+..++..+|++|+|+|++.+.......++...+. .++|+++++||+|+..... +.....
T Consensus 89 ~~d---------f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~--~~iPiiv~iNK~D~~~a~~~~~l~~i~~ 157 (526)
T PRK00741 89 HED---------FSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRL--RDTPIFTFINKLDRDGREPLELLDEIEE 157 (526)
T ss_pred chh---------hHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHh--cCCCEEEEEECCcccccCHHHHHHHHHH
Confidence 633 22345566789999999999999888877777777666 7899999999999864221 011100
Q ss_pred HHH-----------------------------------------------------------------------------
Q 015092 250 WYE----------------------------------------------------------------------------- 252 (413)
Q Consensus 250 ~~~----------------------------------------------------------------------------- 252 (413)
.+.
T Consensus 158 ~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~ 237 (526)
T PRK00741 158 VLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNE 237 (526)
T ss_pred HhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccc
Confidence 000
Q ss_pred ------hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCC-ccCCchhhHHHHHHHHHHHHhhc-CCCCCceeE
Q 015092 253 ------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD-IVSEHPERFFVGEIIREKIFMQY-RNEVPYACQ 324 (413)
Q Consensus 253 ------~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~~-~~t~~~~~~~~~eiiReki~~~~-~~eipys~~ 324 (413)
....+.|+|+.||.++.||..|++.|.+++|.+....... .+... ...+.+.++ |+...+ .+..+..+.
T Consensus 238 ~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~-~~~~~~~VF--K~~~~m~~~~~grlaf 314 (526)
T PRK00741 238 FDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDEREVEPT-EEKFSGFVF--KIQANMDPKHRDRIAF 314 (526)
T ss_pred hhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccceeecCC-CCceEEEEE--EEEecCCCCcCceEEE
Confidence 0112357999999999999999999999998653211100 01000 111222222 111111 346788999
Q ss_pred EEEEEEEecCCCeeEEEEEEEEeeCCcceEEeecCChHH
Q 015092 325 VNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKAL 363 (413)
Q Consensus 325 v~v~~~~~~~~~~~~i~~~~~~~r~~~~~i~iG~~g~~i 363 (413)
++|.+|+.+.|..+++......+|.++.+.+.|++...+
T Consensus 315 vRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v 353 (526)
T PRK00741 315 VRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHV 353 (526)
T ss_pred EEEeccEECCCCEEEeccCCceEEecceEEEecCCceEC
Confidence 999999999887777665555566677777766665444
No 96
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.82 E-value=1.7e-19 Score=161.14 Aligned_cols=155 Identities=15% Similarity=0.178 Sum_probs=102.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.+|+++|.+|||||||++++.+..+. .....|........+. .....+.+|||||. ..+..+ ...++
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~l-------~~~~~ 71 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQ--AEFTAM-------RDQYM 71 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCc--hhhHHH-------hHHHh
Confidence 48999999999999999999987764 2223333222222222 33367899999994 333333 34457
Q ss_pred ccccEEEEEeeCCCCCc--hHHHHHHHHccc--cCCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCccEEEcccCCC
Q 015092 194 INADCIVVLVDACKAPE--RIDEILEEGVGD--HKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~--~~~~~p~ilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~iSA~~g 268 (413)
..+|++|+|+|+++... ....+ ...+.. ...+.|+++|+||+|+.....+.. ....+.+..+ .++++|||++|
T Consensus 72 ~~~d~~ilv~d~~~~~Sf~~~~~~-~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sa~~~ 149 (172)
T cd04141 72 RCGEGFIICYSVTDRHSFQEASEF-KKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFN-CPFFETSAALR 149 (172)
T ss_pred hcCCEEEEEEECCchhHHHHHHHH-HHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhC-CEEEEEecCCC
Confidence 89999999999987642 22222 222221 125799999999999864332221 1222222223 48999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015092 269 HGVEDIRDWILTKLP 283 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~ 283 (413)
.||++++++|...+.
T Consensus 150 ~~v~~~f~~l~~~~~ 164 (172)
T cd04141 150 HYIDDAFHGLVREIR 164 (172)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987654
No 97
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.82 E-value=3.2e-19 Score=156.63 Aligned_cols=155 Identities=18% Similarity=0.201 Sum_probs=101.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceee-eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~-vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
+|+++|++|+|||||+|+|++..+.. ..+..+.+.......+.....++.+|||||. ..+..+ ....++.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~~-------~~~~~~~ 72 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQ--ERFRTL-------TSSYYRG 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCc--hhhhhh-------hHHHhCC
Confidence 79999999999999999999887643 2233333332222223334467999999994 332222 3344789
Q ss_pred ccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHH
Q 015092 196 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (413)
Q Consensus 196 aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~ 272 (413)
+|++++|+|++++. .....++....+.. ..+.|+++|+||+|+............+....+ .+++++||++|.|++
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 151 (161)
T cd01863 73 AQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHN-MLFIETSAKTRDGVQ 151 (161)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcC-CEEEEEecCCCCCHH
Confidence 99999999988653 22223222222211 257899999999999733221122222222223 479999999999999
Q ss_pred HHHHHHHhh
Q 015092 273 DIRDWILTK 281 (413)
Q Consensus 273 ~L~~~l~~~ 281 (413)
++++.+.+.
T Consensus 152 ~~~~~~~~~ 160 (161)
T cd01863 152 QAFEELVEK 160 (161)
T ss_pred HHHHHHHHh
Confidence 999998865
No 98
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.82 E-value=3.3e-19 Score=160.66 Aligned_cols=157 Identities=17% Similarity=0.182 Sum_probs=104.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+..+|+++|.+|||||||+++|....+... .+|.... ...+...+..+.+|||||. ..+. ..+..++
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~---~pt~g~~-~~~~~~~~~~~~i~D~~Gq--~~~~-------~~~~~~~ 82 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFN-VETVEYKNISFTVWDVGGQ--DKIR-------PLWRHYF 82 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCccc---cCCccee-EEEEEECCEEEEEEECCCC--HHHH-------HHHHHHh
Confidence 446899999999999999999986655322 2222111 1234556789999999994 3332 2345568
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHhc---CCCccEEEcccCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~ 267 (413)
..+|++|||+|+++.. .....++...+... ..+.|++||+||+|+.......+....+... .....++++||++
T Consensus 83 ~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~ 162 (181)
T PLN00223 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
T ss_pred ccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCC
Confidence 8999999999998653 22333444443321 1478999999999987554333333332211 0112467899999
Q ss_pred CCCHHHHHHHHHhhCC
Q 015092 268 GHGVEDIRDWILTKLP 283 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~ 283 (413)
|+|+.+++++|.+.+.
T Consensus 163 g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 163 GEGLYEGLDWLSNNIA 178 (181)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999987764
No 99
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=2.5e-19 Score=163.97 Aligned_cols=157 Identities=19% Similarity=0.217 Sum_probs=103.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCce-EEEEEEEEe---CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGICS---GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt-~~~~~~~~~---~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
+|+++|.+|||||||+++|++..+.. ....|. .+.....+. .....+.+|||||. ..+..+ ...+
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~--~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~~ 70 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQ--HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ--ERFGGM-------TRVY 70 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeEEEEEEEEEECCCCEEEEEEEECCCc--hhhhhh-------HHHH
Confidence 79999999999999999999876532 122222 222222222 33567899999994 333322 4455
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHc---cc-cCCCCCEEEEEecCCCCChhh-HHHHHHHHHhcCCCccEEEccc
Q 015092 193 GINADCIVVLVDACKAP--ERIDEILEEGV---GD-HKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSA 265 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l---~~-~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA 265 (413)
++.+|++|+|+|++++. .....|+..+. .. ...+.|+++|+||+|+..... .......+....++.+++++||
T Consensus 71 ~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 150 (201)
T cd04107 71 YRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSA 150 (201)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeC
Confidence 88999999999998753 22222322221 11 125689999999999963211 1122233333344568999999
Q ss_pred CCCCCHHHHHHHHHhhCCC
Q 015092 266 KYGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 266 ~~g~gv~~L~~~l~~~l~~ 284 (413)
++|.|+++++++|.+.+..
T Consensus 151 k~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 151 KEGINIEEAMRFLVKNILA 169 (201)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987753
No 100
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.82 E-value=2.5e-19 Score=158.01 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=101.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeee-CCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs-~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
+|+++|.+|||||||++++++..+.... +..+.+.......+......+.+|||||. ..+.. ....++..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~-------~~~~~~~~ 72 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQ--ERFQT-------MHASYYHK 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCc--hhhhh-------hhHHHhCC
Confidence 7999999999999999999987764211 11111211212223344567889999994 33332 34455889
Q ss_pred ccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHH
Q 015092 196 ADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (413)
Q Consensus 196 aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~ 273 (413)
+|++|+|+|++++.. ....++.. ++....+.|+++|+||+|+.... ...... +....+ .+++++||++|.|+++
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~-i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~-~~~~~~-~~~~~~Sa~~~~gv~~ 148 (161)
T cd04124 73 AHACILVFDVTRKITYKNLSKWYEE-LREYRPEIPCIVVANKIDLDPSV-TQKKFN-FAEKHN-LPLYYVSAADGTNVVK 148 (161)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHH-HHHhCCCCcEEEEEECccCchhH-HHHHHH-HHHHcC-CeEEEEeCCCCCCHHH
Confidence 999999999987543 22333333 33322579999999999985321 111122 222222 4789999999999999
Q ss_pred HHHHHHhhCC
Q 015092 274 IRDWILTKLP 283 (413)
Q Consensus 274 L~~~l~~~l~ 283 (413)
+++.+.+.+.
T Consensus 149 l~~~l~~~~~ 158 (161)
T cd04124 149 LFQDAIKLAV 158 (161)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 101
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.82 E-value=3.3e-19 Score=158.17 Aligned_cols=156 Identities=17% Similarity=0.171 Sum_probs=101.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.+|+++|.+|||||||++++++..+... ..+..+.+..... +......+.+||||| +..+..+ ...++
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G--~~~~~~~-------~~~~~ 75 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQ-LFHTIGVEFLNKDLEVDGHFVTLQIWDTAG--QERFRSL-------RTPFY 75 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcC-cCCceeeEEEEEEEEECCeEEEEEEEeCCC--hHHHHHh-------HHHHh
Confidence 4899999999999999999998766421 1122122221112 334446788999999 3333332 33457
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHcccc----CCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~----~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
+.+|++++|+|.++.. .....+....+... ..+.|+++|+||+|+............+....+..+++++||++
T Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 155 (170)
T cd04116 76 RGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKD 155 (170)
T ss_pred cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCC
Confidence 8999999999988653 33333433332211 14689999999999864322122222332333445799999999
Q ss_pred CCCHHHHHHHHHhh
Q 015092 268 GHGVEDIRDWILTK 281 (413)
Q Consensus 268 g~gv~~L~~~l~~~ 281 (413)
|.|+.++++.+.+.
T Consensus 156 ~~~v~~~~~~~~~~ 169 (170)
T cd04116 156 ATNVAAAFEEAVRR 169 (170)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999864
No 102
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.82 E-value=1.8e-19 Score=159.88 Aligned_cols=157 Identities=18% Similarity=0.206 Sum_probs=101.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceee-eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~-vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
+|+++|.+|||||||+++++...+.. ..++.+................+.+|||||. ..+..+.. ..+..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~~-------~~~~~ 72 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQ--EKFGGLRD-------GYYIG 72 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCC--hhhccccH-------HHhcC
Confidence 79999999999999999998665431 1111122222222222334568899999995 33333322 23678
Q ss_pred ccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHH
Q 015092 196 ADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (413)
Q Consensus 196 aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~ 273 (413)
+|++|+|+|++++.. ....++..+.+. ..+.|+++|+||+|+......... ..+... ...+++++||++|.|+++
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~piiiv~nK~Dl~~~~~~~~~-~~~~~~-~~~~~~e~Sa~~~~~v~~ 149 (166)
T cd00877 73 GQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CGNIPIVLCGNKVDIKDRKVKAKQ-ITFHRK-KNLQYYEISAKSNYNFEK 149 (166)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEEchhcccccCCHHH-HHHHHH-cCCEEEEEeCCCCCChHH
Confidence 999999999987542 223333333222 247999999999999733221222 222222 335799999999999999
Q ss_pred HHHHHHhhCCCC
Q 015092 274 IRDWILTKLPLG 285 (413)
Q Consensus 274 L~~~l~~~l~~~ 285 (413)
++++|.+.+...
T Consensus 150 ~f~~l~~~~~~~ 161 (166)
T cd00877 150 PFLWLARKLLGN 161 (166)
T ss_pred HHHHHHHHHHhc
Confidence 999999877543
No 103
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.82 E-value=2.6e-19 Score=158.63 Aligned_cols=155 Identities=18% Similarity=0.208 Sum_probs=102.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEE-EEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH-RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~-~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
+|+++|.+|||||||+++|.+..+.. ..+.+... .....+.....++.+|||||... .. ..+...+..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~-------~~~~~~~~~ 70 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPE--NVPRVLPEITIPADVTPERVPTTIVDTSSRPQ--DR-------ANLAAEIRK 70 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc--cCCCcccceEeeeeecCCeEEEEEEeCCCchh--hh-------HHHhhhccc
Confidence 79999999999999999999887642 23322211 11122334567899999999532 11 123344689
Q ss_pred ccEEEEEeeCCCCCchHH--HHHHHHccccCCCCCEEEEEecCCCCChhhH---HHHHHHH-HhcCCCccEEEcccCCCC
Q 015092 196 ADCIVVLVDACKAPERID--EILEEGVGDHKDKLPILLVLNKKDLIKPGEI---AKKLEWY-EKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 196 aD~vl~VvD~~~~~~~~~--~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~---~~~~~~~-~~~~~~~~v~~iSA~~g~ 269 (413)
+|++++|+|++++..-.. ..+...++....+.|+++|+||+|+.+.... ......+ .......+++++||++|.
T Consensus 71 ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 150 (166)
T cd01893 71 ANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLI 150 (166)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEecccccc
Confidence 999999999887543222 2333334432357999999999999754331 1222222 222223479999999999
Q ss_pred CHHHHHHHHHhhC
Q 015092 270 GVEDIRDWILTKL 282 (413)
Q Consensus 270 gv~~L~~~l~~~l 282 (413)
|+++++..+...+
T Consensus 151 ~v~~lf~~~~~~~ 163 (166)
T cd01893 151 NVSEVFYYAQKAV 163 (166)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999988765
No 104
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=2.6e-19 Score=169.31 Aligned_cols=176 Identities=22% Similarity=0.272 Sum_probs=134.2
Q ss_pred cccCCCCCCCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHH
Q 015092 105 FDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSM 184 (413)
Q Consensus 105 ~~~~~~~~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~ 184 (413)
+...+.-+...+.|+|.|+||||||||+++|++.+.- +.++|.||+....|++..+..++.++||||+.+.+....+..
T Consensus 158 l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpE-vA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~I 236 (346)
T COG1084 158 LKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPE-VAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEI 236 (346)
T ss_pred HhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCc-cCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHH
Confidence 3344555667789999999999999999999998876 799999999999999999999999999999998776666555
Q ss_pred HHHHHHhhcccccEEEEEeeCCCCC----chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccE
Q 015092 185 MMKNVRSAGINADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEV 260 (413)
Q Consensus 185 ~~~~~~~~~~~aD~vl~VvD~~~~~----~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v 260 (413)
-.+.+...-..+++|||++|.+..+ +.+. .+++.++.. -+.|+++|+||+|....+.+.+....+.... ....
T Consensus 237 E~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~-~L~~eIk~~-f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~-~~~~ 313 (346)
T COG1084 237 ERQAILALRHLAGVILFLFDPSETCGYSLEEQI-SLLEEIKEL-FKAPIVVVINKIDIADEEKLEEIEASVLEEG-GEEP 313 (346)
T ss_pred HHHHHHHHHHhcCeEEEEEcCccccCCCHHHHH-HHHHHHHHh-cCCCeEEEEecccccchhHHHHHHHHHHhhc-cccc
Confidence 4444444445689999999998654 2233 334434432 3489999999999987776666555544433 3345
Q ss_pred EEcccCCCCCHHHHHHHHHhhCCC
Q 015092 261 IPVSAKYGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 261 ~~iSA~~g~gv~~L~~~l~~~l~~ 284 (413)
..+|+..+.+++.+...+...+.+
T Consensus 314 ~~~~~~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 314 LKISATKGCGLDKLREEVRKTALE 337 (346)
T ss_pred cceeeeehhhHHHHHHHHHHHhhc
Confidence 778999999999999888877543
No 105
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.82 E-value=2.6e-19 Score=157.33 Aligned_cols=155 Identities=19% Similarity=0.168 Sum_probs=102.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+++|++|+|||||+++|++..+.. ...+..+.......+..++ ..+.+|||||. ..+. ......+.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~-------~~~~~~~~ 71 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSE-QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ--ERFR-------SITSSYYR 71 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCh--HHHH-------HHHHHHhC
Confidence 79999999999999999999887632 2222222222222222333 57899999994 3322 22344578
Q ss_pred cccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCccEEEcccCCCCC
Q 015092 195 NADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
.+|++++|+|++++.. ....++.........+.|+++|+||+|+..... ....... ....+ .+++++||++|.|
T Consensus 72 ~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~-~~~~~-~~~~e~Sa~~~~~ 149 (164)
T smart00175 72 GAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAF-AEEHG-LPFFETSAKTNTN 149 (164)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHH-HHHcC-CeEEEEeCCCCCC
Confidence 9999999999987542 223333333332225799999999999875322 1222222 23333 4799999999999
Q ss_pred HHHHHHHHHhhCC
Q 015092 271 VEDIRDWILTKLP 283 (413)
Q Consensus 271 v~~L~~~l~~~l~ 283 (413)
+++++++|.+.+.
T Consensus 150 i~~l~~~i~~~~~ 162 (164)
T smart00175 150 VEEAFEELAREIL 162 (164)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 106
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.82 E-value=1.1e-19 Score=164.88 Aligned_cols=155 Identities=21% Similarity=0.197 Sum_probs=100.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+++|.+|||||||+++|+...+. ...++|+....... +......+.+|||||. ..+..+ ...++.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~~ 69 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV--ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQ--EEYTAL-------RDQWIR 69 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchHhhEEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHHHHH
Confidence 4899999999999999999987764 23334433222222 2223346889999994 333333 334578
Q ss_pred cccEEEEEeeCCCCC--chHHHHHHHHcccc---CCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCccEEEcccCCC
Q 015092 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~---~~~~p~ilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~iSA~~g 268 (413)
.+|++|+|+|.++.. .....++..+.... ..+.|+++|+||+|+.....+.. ....+....+ .+++++||++|
T Consensus 70 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~SAk~~ 148 (190)
T cd04144 70 EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLG-CEFIEASAKTN 148 (190)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhC-CEEEEecCCCC
Confidence 999999999998754 22333333222111 14689999999999964332211 1122222223 47999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015092 269 HGVEDIRDWILTKLP 283 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~ 283 (413)
.|+++++.++.+.+.
T Consensus 149 ~~v~~l~~~l~~~l~ 163 (190)
T cd04144 149 VNVERAFYTLVRALR 163 (190)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999997653
No 107
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.82 E-value=2.2e-19 Score=157.78 Aligned_cols=154 Identities=18% Similarity=0.197 Sum_probs=101.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeC-CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~-~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
+|+++|++|||||||+++|++.++..... ..+.........+......+.+|||||. ..+. ......++.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~--~~~~-------~~~~~~~~~ 72 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQ--ERFR-------SVTRSYYRG 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcch--HHHH-------HhHHHHhcC
Confidence 79999999999999999999887642211 1111111111222333467899999994 3322 223445789
Q ss_pred ccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCccEEEcccCCCCCH
Q 015092 196 ADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (413)
Q Consensus 196 aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~iSA~~g~gv 271 (413)
+|++++|+|++++.. ....++.........+.|+++|+||+|+.....+ ......... .+ .+++++||++|.|+
T Consensus 73 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~~i 150 (161)
T cd04113 73 AAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQE-NG-LLFLETSALTGENV 150 (161)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHH-cC-CEEEEEECCCCCCH
Confidence 999999999987542 2333333322222267899999999999753322 122222222 33 58999999999999
Q ss_pred HHHHHHHHhh
Q 015092 272 EDIRDWILTK 281 (413)
Q Consensus 272 ~~L~~~l~~~ 281 (413)
.++++++++.
T Consensus 151 ~~~~~~~~~~ 160 (161)
T cd04113 151 EEAFLKCARS 160 (161)
T ss_pred HHHHHHHHHh
Confidence 9999999865
No 108
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.82 E-value=9.3e-20 Score=195.60 Aligned_cols=232 Identities=15% Similarity=0.065 Sum_probs=154.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceee-----eeC------------CCCceEEEEEEEEeCCCeeEEEEeCCCCchhh
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-----VTN------------KPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~-----vs~------------~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~ 177 (413)
-.+|+|+|++|+|||||+|+|+.....+ +.+ ..++|.+.....+.+++.++++|||||+.+
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~-- 87 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD-- 87 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc--
Confidence 3489999999999999999997533211 111 346777777777888999999999999743
Q ss_pred hhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh--h-HHHHHHHHH--
Q 015092 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--E-IAKKLEWYE-- 252 (413)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~--~-~~~~~~~~~-- 252 (413)
+...+..++..+|++|+|+|+..+....+..++..++. .+.|+++|+||+|+.... . +..+...+.
T Consensus 88 -------~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~ 158 (689)
T TIGR00484 88 -------FTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANR--YEVPRIAFVNKMDKTGANFLRVVNQIKQRLGAN 158 (689)
T ss_pred -------hhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCC
Confidence 12235666889999999999999888777777777666 679999999999986421 1 011000000
Q ss_pred --------------------------------------------------------------------------------
Q 015092 253 -------------------------------------------------------------------------------- 252 (413)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (413)
T Consensus 159 ~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~ 238 (689)
T TIGR00484 159 AVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIE 238 (689)
T ss_pred ceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHH
Confidence
Q ss_pred ----------hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCC----------CccCCchhhHHHHHHHHHHHH
Q 015092 253 ----------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPK----------DIVSEHPERFFVGEIIREKIF 312 (413)
Q Consensus 253 ----------~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~----------~~~t~~~~~~~~~eiiReki~ 312 (413)
....+.|++..||.++.|++.|++.|..++|.+....+. ......+...+++.++ |+
T Consensus 239 ~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~Vf--K~- 315 (689)
T TIGR00484 239 EIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAF--KV- 315 (689)
T ss_pred HHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEE--Ee-
Confidence 011245788899999999999999999999965321100 0011112222222222 11
Q ss_pred hhcCCCCCceeEEEEEEEEecCCCeeEEEEEEEEeeCCcceEEeecCCh
Q 015092 313 MQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGK 361 (413)
Q Consensus 313 ~~~~~eipys~~v~v~~~~~~~~~~~~i~~~~~~~r~~~~~i~iG~~g~ 361 (413)
...+..+..+.++|.+|+.+.|..+++......++.++.+.+.|....
T Consensus 316 -~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~ 363 (689)
T TIGR00484 316 -ATDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNRE 363 (689)
T ss_pred -eecCCCCeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcc
Confidence 125678899999999999998876654433333444555555555433
No 109
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.82 E-value=4e-19 Score=160.74 Aligned_cols=156 Identities=22% Similarity=0.202 Sum_probs=105.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+..+|+++|++|||||||+++|.+..+....+ |.......+..++..+.+|||||.. .+. ..+..++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~----T~~~~~~~i~~~~~~~~l~D~~G~~--~~~-------~~~~~~~ 84 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVP----TLHPTSEELTIGNIKFKTFDLGGHE--QAR-------RLWKDYF 84 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCC----ccCcceEEEEECCEEEEEEECCCCH--HHH-------HHHHHHh
Confidence 56799999999999999999999877542222 2222233455567889999999942 222 2344567
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccccC-CCCCEEEEEecCCCCChhhHHHHHHHHHh--------------cCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEK--------------FTD 256 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~--------------~~~ 256 (413)
..+|++++|+|+++.. .....++...++... .+.|+++|+||+|+............+.. ...
T Consensus 85 ~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T cd00879 85 PEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIR 164 (190)
T ss_pred ccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCce
Confidence 8999999999998642 223344444443221 56999999999998643222333333321 011
Q ss_pred CccEEEcccCCCCCHHHHHHHHHhhC
Q 015092 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 257 ~~~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
..+++++||++|.|+++++++|.+.+
T Consensus 165 ~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 165 PIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred eEEEEEeEecCCCChHHHHHHHHhhC
Confidence 24689999999999999999998754
No 110
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.82 E-value=1.6e-19 Score=160.67 Aligned_cols=154 Identities=19% Similarity=0.168 Sum_probs=100.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015092 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 118 v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
|+|+|.+|||||||++++.+..+. ..+..+........+..+ ...+.+|||||. ..+..+. ...+..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~-------~~~~~~ 69 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP--EDYVPTVFENYSADVEVDGKPVELGLWDTAGQ--EDYDRLR-------PLSYPD 69 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC--CCCCCcEEeeeeEEEEECCEEEEEEEEECCCC--cccchhc-------hhhcCC
Confidence 589999999999999999988764 222233333222222222 346899999994 3333332 234789
Q ss_pred ccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhh-H------------HHHHHHHHhcCCCccE
Q 015092 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-I------------AKKLEWYEKFTDVDEV 260 (413)
Q Consensus 196 aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~-~------------~~~~~~~~~~~~~~~v 260 (413)
+|++|+|+|+++.. ......+...+.....+.|+++|+||+|+..... . ......+....+..++
T Consensus 70 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 149 (174)
T smart00174 70 TDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKY 149 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEE
Confidence 99999999998753 2222223333333236899999999999964221 0 0111223333344578
Q ss_pred EEcccCCCCCHHHHHHHHHhhC
Q 015092 261 IPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 261 ~~iSA~~g~gv~~L~~~l~~~l 282 (413)
+++||++|.|++++++.+.+.+
T Consensus 150 ~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 150 LECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred EEecCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998765
No 111
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.82 E-value=9.5e-20 Score=188.65 Aligned_cols=236 Identities=21% Similarity=0.160 Sum_probs=153.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceee-----ee----------C------CCCceEEEEEEEEeCCCeeEEEEeCCC
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----VT----------N------KPQTTRHRILGICSGPEYQMILYDTPG 172 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~-----vs----------~------~~~tt~~~~~~~~~~~~~~~~l~DtpG 172 (413)
+..+|+|+|++|+|||||+++|+.....+ +. + ..+.|.......+.+++.++++|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 44589999999999999999986422111 11 1 012222233344677889999999999
Q ss_pred CchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCC--hhhHHHHHHH
Q 015092 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK--PGEIAKKLEW 250 (413)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~--~~~~~~~~~~ 250 (413)
+.+ +...+..++..+|++|+|+|++.+.......+++.++. .+.|+++++||+|+.. ...+.+.++.
T Consensus 90 ~~d---------f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~--~~~PiivviNKiD~~~~~~~~ll~~i~~ 158 (527)
T TIGR00503 90 HED---------FSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL--RDTPIFTFMNKLDRDIRDPLELLDEVEN 158 (527)
T ss_pred hhh---------HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECccccCCCHHHHHHHHHH
Confidence 632 33446667889999999999999888777777777766 6899999999999853 2111100000
Q ss_pred -------------------------------------------------------------------------HH-----
Q 015092 251 -------------------------------------------------------------------------YE----- 252 (413)
Q Consensus 251 -------------------------------------------------------------------------~~----- 252 (413)
+.
T Consensus 159 ~l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~ 238 (527)
T TIGR00503 159 ELKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNE 238 (527)
T ss_pred HhCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccc
Confidence 00
Q ss_pred ------hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCC-CCccCCchhhHHHHHHHHHHHHhhcC-CCCCceeE
Q 015092 253 ------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYP-KDIVSEHPERFFVGEIIREKIFMQYR-NEVPYACQ 324 (413)
Q Consensus 253 ------~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~-~~~~t~~~~~~~~~eiiReki~~~~~-~eipys~~ 324 (413)
....+.|+|+.||.++.||+.|++.|..++|.+..... ...+.. ....+.+.++ |+...++ +..+..+.
T Consensus 239 ~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~-~~~~~~~~VF--K~~~~mdp~~~griaf 315 (527)
T TIGR00503 239 FDLAAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRTVEP-TEEKFSGFVF--KIQANMDPKHRDRVAF 315 (527)
T ss_pred cCHHHHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCceecCC-CCCCeeEEEE--EEEeccCcccCceEEE
Confidence 01234578999999999999999999999986532111 001111 1111233233 2222334 47889999
Q ss_pred EEEEEEEecCCCeeEEEEEEEEeeCCcceEEeecCChHH
Q 015092 325 VNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKAL 363 (413)
Q Consensus 325 v~v~~~~~~~~~~~~i~~~~~~~r~~~~~i~iG~~g~~i 363 (413)
++|.+|+.+.|..+++......+|.++.+.+.|+....+
T Consensus 316 ~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v 354 (527)
T TIGR00503 316 MRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHV 354 (527)
T ss_pred EEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEc
Confidence 999999999887776655444556666666666555444
No 112
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.82 E-value=2.8e-19 Score=160.33 Aligned_cols=155 Identities=21% Similarity=0.208 Sum_probs=104.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+++|.++||||||+.+++...+. ..+..|........ +......+.+|||+|. +.+..+. ..+++
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f~--~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~--~~~~~~~-------~~~~~ 71 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQ--EDYNRLR-------PLSYR 71 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC--CCCCCcceeeeEEEEEECCEEEEEEEEECCCC--ccccccc-------hhhcC
Confidence 7999999999999999999988764 22333332222222 2233467899999994 4444442 33488
Q ss_pred cccEEEEEeeCCCCCc--hH-HHHHHHHccccCCCCCEEEEEecCCCCChhh----------H-HHHHHHHHhcCCCccE
Q 015092 195 NADCIVVLVDACKAPE--RI-DEILEEGVGDHKDKLPILLVLNKKDLIKPGE----------I-AKKLEWYEKFTDVDEV 260 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~--~~-~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~----------~-~~~~~~~~~~~~~~~v 260 (413)
.||++|+|+|.++... .. ..|+.. ++....+.|++||+||+|+.+... + ......+....+..++
T Consensus 72 ~a~~~ilvyd~~~~~Sf~~~~~~w~~~-i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~ 150 (176)
T cd04133 72 GADVFVLAFSLISRASYENVLKKWVPE-LRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAY 150 (176)
T ss_pred CCcEEEEEEEcCCHHHHHHHHHHHHHH-HHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEE
Confidence 9999999999987543 22 234333 333235799999999999964321 1 1222333333344468
Q ss_pred EEcccCCCCCHHHHHHHHHhhCC
Q 015092 261 IPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 261 ~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
++|||++|.||++++..+.+.+.
T Consensus 151 ~E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 151 IECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred EECCCCcccCHHHHHHHHHHHHh
Confidence 99999999999999999998653
No 113
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.82 E-value=2.2e-19 Score=154.62 Aligned_cols=140 Identities=17% Similarity=0.214 Sum_probs=91.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
+|+++|++|||||||+|+|++.... ... |.. +.+. -.+|||||... ..... .+.....+++|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~-t~~-----~~~~---~~~iDt~G~~~----~~~~~-~~~~~~~~~~a 63 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YKK-TQA-----VEYN---DGAIDTPGEYV----ENRRL-YSALIVTAADA 63 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----ccc-cee-----EEEc---CeeecCchhhh----hhHHH-HHHHHHHhhcC
Confidence 7999999999999999999988653 111 111 1111 16899999521 11111 22233457899
Q ss_pred cEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHHH
Q 015092 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (413)
Q Consensus 197 D~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~ 276 (413)
|++|+|+|++++.......+... ...|+++|+||+|+.+.....+....+....+..+++++||++|.|++++++
T Consensus 64 d~vilv~d~~~~~s~~~~~~~~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 64 DVIALVQSATDPESRFPPGFASI-----FVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred CEEEEEecCCCCCcCCChhHHHh-----ccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999988765433333332 2349999999999865322122222222222344799999999999999999
Q ss_pred HHH
Q 015092 277 WIL 279 (413)
Q Consensus 277 ~l~ 279 (413)
+|.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 875
No 114
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.82 E-value=5.6e-19 Score=155.57 Aligned_cols=155 Identities=19% Similarity=0.264 Sum_probs=100.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceE-EEEEEE--E-eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILGI--C-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~-~~~~~~--~-~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
+|+++|.+|||||||+++|..........+..++. +..... + ......+.+|||||. ..+..+ ....
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~ 72 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ--ELYSDM-------VSNY 72 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH--HHHHHH-------HHHH
Confidence 79999999999999999998653222233333332 211111 2 234578999999993 333322 3445
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCccEEEcccCCCC
Q 015092 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
+..+|++++|+|.++.. .....++.. +.....+.|+++|+||+|+.+...+.. ....+....+ .+++++||++|.
T Consensus 73 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~-~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 150 (164)
T cd04101 73 WESPSVFILVYDVSNKASFENCSRWVNK-VRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQ-LKFFKTSALRGV 150 (164)
T ss_pred hCCCCEEEEEEECcCHHHHHHHHHHHHH-HHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 78999999999998653 222333333 222224689999999999965433222 1122222222 478999999999
Q ss_pred CHHHHHHHHHhhC
Q 015092 270 GVEDIRDWILTKL 282 (413)
Q Consensus 270 gv~~L~~~l~~~l 282 (413)
|++++++.|.+.+
T Consensus 151 gi~~l~~~l~~~~ 163 (164)
T cd04101 151 GYEEPFESLARAF 163 (164)
T ss_pred ChHHHHHHHHHHh
Confidence 9999999998754
No 115
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.82 E-value=3.1e-19 Score=161.87 Aligned_cols=156 Identities=19% Similarity=0.148 Sum_probs=102.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+++|.+|||||||++++.+..+.. ....|........ .......+.+|||||. ..+..+ ...++.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~--~~~~~l-------~~~~~~ 70 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQ--VYEPTVFENYVHDIFVDGLHIELSLWDTAGQ--EEFDRL-------RSLSYA 70 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC--ccCCcceeeeEEEEEECCEEEEEEEEECCCC--hhcccc-------cccccc
Confidence 79999999999999999999887642 2222221211112 2223467899999994 333333 223478
Q ss_pred cccEEEEEeeCCCCCch--HHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHH-------------HHHHHhcCCCcc
Q 015092 195 NADCIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-------------LEWYEKFTDVDE 259 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~~--~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~-------------~~~~~~~~~~~~ 259 (413)
.+|++++|+|+++.... ....+...+.....+.|+++|+||+|+......... ...+....+..+
T Consensus 71 ~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 150 (189)
T cd04134 71 DTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALR 150 (189)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCE
Confidence 99999999998876422 222223333332357999999999999754322111 111222223357
Q ss_pred EEEcccCCCCCHHHHHHHHHhhCC
Q 015092 260 VIPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 260 v~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
++++||++|.|+++++.+|.+.+.
T Consensus 151 ~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 151 YLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred EEEccCCcCCCHHHHHHHHHHHHh
Confidence 899999999999999999998775
No 116
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.82 E-value=4.3e-19 Score=153.26 Aligned_cols=157 Identities=27% Similarity=0.391 Sum_probs=109.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.+|+++|++|+|||||+|+|++.. ......+.++.+.....+..++ ..+.+|||||. ..+..+.......+...+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--~~~~~~~~~~~~~~~~~i 78 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ--EDYRAIRRLYYRAVESSL 78 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCc--ccchHHHHHHHhhhhEEE
Confidence 489999999999999999999988 5566677888877776666666 77899999994 344444444444455555
Q ss_pred ccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHH
Q 015092 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~ 273 (413)
..+|++++|+|...........+..... .+.|+++|+||+|+............+.. .+..+++++||++|.|+.+
T Consensus 79 ~~~d~~~~v~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~gv~~ 154 (161)
T TIGR00231 79 RVFDIVILVLDVEEILEKQTKEIIHHAE---SNVPIILVGNKIDLRDAKLKTHVAFLFAK-LNGEPIIPLSAETGKNIDS 154 (161)
T ss_pred EEEEEeeeehhhhhHhHHHHHHHHHhcc---cCCcEEEEEEcccCCcchhhHHHHHHHhh-ccCCceEEeecCCCCCHHH
Confidence 5666666666655443333333333332 27899999999999764422222233333 3345799999999999999
Q ss_pred HHHHHH
Q 015092 274 IRDWIL 279 (413)
Q Consensus 274 L~~~l~ 279 (413)
++++|.
T Consensus 155 ~~~~l~ 160 (161)
T TIGR00231 155 AFKIVE 160 (161)
T ss_pred HHHHhh
Confidence 999874
No 117
>PTZ00369 Ras-like protein; Provisional
Probab=99.82 E-value=2.9e-19 Score=161.94 Aligned_cols=157 Identities=19% Similarity=0.171 Sum_probs=103.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
..+|+++|.+|||||||++++.+..+. .....|........ +......+.+|||||. ..+..+ +..+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~l-------~~~~ 73 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI--DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQ--EEYSAM-------RDQY 73 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCchhhEEEEEEEECCEEEEEEEEeCCCC--ccchhh-------HHHH
Confidence 458999999999999999999987763 22223322222222 3333456889999995 334333 3334
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCccEEEcccCCC
Q 015092 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~iSA~~g 268 (413)
+..+|++++|+|+++.. .....++..+.+.. ..+.|+++|+||+|+.....+.. ....+....+ .+++++||++|
T Consensus 74 ~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~-~~~~e~Sak~~ 152 (189)
T PTZ00369 74 MRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFG-IPFLETSAKQR 152 (189)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhC-CEEEEeeCCCC
Confidence 78999999999998754 23333333332221 14789999999999864332211 1111222222 47999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015092 269 HGVEDIRDWILTKLP 283 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~ 283 (413)
.|+++++.+|.+.+.
T Consensus 153 ~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 153 VNVDEAFYELVREIR 167 (189)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987764
No 118
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.82 E-value=3e-19 Score=157.23 Aligned_cols=155 Identities=21% Similarity=0.181 Sum_probs=101.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.+|+++|.+|||||||+++++...+.. ....|........+. .....+.+|||||. +.+..+ ...++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGT--EQFASM-------RDLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCchhheEEEEEEECCEEEEEEEEECCCc--ccccch-------HHHHH
Confidence 379999999999999999999876642 223333222222222 22346789999994 344433 23347
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
..+|++++|+|.++.. .....++....+.. ..+.|+++|+||+|+.....+. .....+....+ .+++++||++|.
T Consensus 71 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (163)
T cd04176 71 KNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWG-CPFMETSAKSKT 149 (163)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhC-CEEEEecCCCCC
Confidence 7999999999998753 33333333332221 1579999999999986432221 11222222223 478999999999
Q ss_pred CHHHHHHHHHhhC
Q 015092 270 GVEDIRDWILTKL 282 (413)
Q Consensus 270 gv~~L~~~l~~~l 282 (413)
|+++++.++.+.+
T Consensus 150 ~v~~l~~~l~~~l 162 (163)
T cd04176 150 MVNELFAEIVRQM 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998765
No 119
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.82 E-value=4.6e-19 Score=159.97 Aligned_cols=157 Identities=20% Similarity=0.178 Sum_probs=103.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEe---CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS---GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~---~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+|+++|.+|||||||+++|.+..+. ..+.+++.......+. .....+.+|||||. ..+..+ ...++
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQ--EEYDRL-------RPLSY 70 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC--CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCc--hhHHHH-------HHHhC
Confidence 7999999999999999999988764 3333343332222222 23457899999994 333322 23347
Q ss_pred ccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhh----H-HHHHHHHHhcCCCccEEEcccC
Q 015092 194 INADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE----I-AKKLEWYEKFTDVDEVIPVSAK 266 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~----~-~~~~~~~~~~~~~~~v~~iSA~ 266 (413)
..||++|+|+|+++... .....+...+.....+.|+++|+||+|+..... + ......+....+..+++++||+
T Consensus 71 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 150 (187)
T cd04132 71 PDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAK 150 (187)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCC
Confidence 89999999999987542 221212222222225789999999999864321 1 1122223333344478999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 015092 267 YGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 267 ~g~gv~~L~~~l~~~l~~ 284 (413)
+|.|+++++..+.+.+..
T Consensus 151 ~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 151 TMENVEEVFDTAIEEALK 168 (187)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999887653
No 120
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.82 E-value=4.3e-19 Score=160.03 Aligned_cols=157 Identities=23% Similarity=0.271 Sum_probs=102.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceE-EEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~-~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+|+++|.+|||||||++++++..+. ..+..|.. +.....+..+ ...+.+|||+|. ..+..+ ...++
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~--~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~--~~~~~~-------~~~~~ 70 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFD--EDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQ--REFINM-------LPLVC 70 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEEECCEEEEEEEEeCCCc--hhHHHh-------hHHHC
Confidence 7999999999999999999987764 22333322 2222223333 367899999994 333322 33458
Q ss_pred ccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCCh----h--hHHHHHHHHHhcCCCccEEEccc
Q 015092 194 INADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKP----G--EIAKKLEWYEKFTDVDEVIPVSA 265 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~----~--~~~~~~~~~~~~~~~~~v~~iSA 265 (413)
+.||++++|+|+++... ....|+....+......| ++|+||+|+... . .+......+....+ .+++++||
T Consensus 71 ~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~e~SA 148 (182)
T cd04128 71 NDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-APLIFCST 148 (182)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC-CEEEEEeC
Confidence 89999999999987642 233444443332123456 789999999521 1 12222233333334 57999999
Q ss_pred CCCCCHHHHHHHHHhhCCCCC
Q 015092 266 KYGHGVEDIRDWILTKLPLGP 286 (413)
Q Consensus 266 ~~g~gv~~L~~~l~~~l~~~~ 286 (413)
++|.|++++++++.+.+..-+
T Consensus 149 k~g~~v~~lf~~l~~~l~~~~ 169 (182)
T cd04128 149 SHSINVQKIFKIVLAKAFDLP 169 (182)
T ss_pred CCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999998776433
No 121
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.82 E-value=3.9e-19 Score=155.70 Aligned_cols=151 Identities=21% Similarity=0.275 Sum_probs=103.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
+|+++|.+|||||||++++++..........+.+.. .+...+..+.+|||||. ..+.. .+...+..+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~D~~G~--~~~~~-------~~~~~~~~~ 67 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVE----TVEYKNVSFTVWDVGGQ--DKIRP-------LWKHYYENT 67 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceE----EEEECCEEEEEEECCCC--hhhHH-------HHHHHhccC
Confidence 589999999999999999999874333333333222 23445688999999995 23222 234457899
Q ss_pred cEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCccEEEcccCCCCC
Q 015092 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 197 D~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~iSA~~g~g 270 (413)
|++++|+|++.+. .....++....... ..+.|+++|+||+|+.......+....+.. .....+++++||++|.|
T Consensus 68 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd00878 68 NGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDG 147 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCC
Confidence 9999999998762 22333333333321 257999999999999764433333333322 12345899999999999
Q ss_pred HHHHHHHHHh
Q 015092 271 VEDIRDWILT 280 (413)
Q Consensus 271 v~~L~~~l~~ 280 (413)
+++++.+|..
T Consensus 148 v~~~~~~l~~ 157 (158)
T cd00878 148 LDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 122
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.81 E-value=4e-19 Score=161.42 Aligned_cols=158 Identities=20% Similarity=0.199 Sum_probs=104.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
..+|+++|.+|||||||+.++....+. ..+..|........ +......+.+||||| ++.+..+ ...+
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G--~e~~~~l-------~~~~ 71 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFP--KEYIPTVFDNYSAQTAVDGRTVSLNLWDTAG--QEEYDRL-------RTLS 71 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCC--cCCCCceEeeeEEEEEECCEEEEEEEEECCC--chhhhhh-------hhhh
Confidence 458999999999999999999987763 22233332222212 233346788999999 4444443 3345
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhH-------------HHHHHHHHhcCCC
Q 015092 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-------------AKKLEWYEKFTDV 257 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-------------~~~~~~~~~~~~~ 257 (413)
++.||++|+|+|+++.. ......+...++....+.|++||+||+|+...... ......+....+.
T Consensus 72 ~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 151 (191)
T cd01875 72 YPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHA 151 (191)
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCC
Confidence 78999999999998754 22322222222222257999999999999643211 0112223232333
Q ss_pred ccEEEcccCCCCCHHHHHHHHHhhCC
Q 015092 258 DEVIPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 258 ~~v~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
.+++++||++|.||++++.+|.+.+.
T Consensus 152 ~~~~e~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 152 VKYLECSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 57999999999999999999998764
No 123
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.81 E-value=4.4e-19 Score=158.79 Aligned_cols=155 Identities=19% Similarity=0.161 Sum_probs=100.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.+|+++|.+|||||||+.+++...+. ..+..|....... .+......+.+|||||. ..+..+ ...++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ--EDYDRL-------RPLSY 70 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CcCCCcceeeeEEEEEECCEEEEEEEEECCCc--hhhhhh-------hhhhc
Confidence 37999999999999999999987653 2333333222221 22333467889999994 333333 23357
Q ss_pred ccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhh-HH------------HHHHHHHhcCCCc
Q 015092 194 INADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IA------------KKLEWYEKFTDVD 258 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~-~~------------~~~~~~~~~~~~~ 258 (413)
..+|++|+|+|++++.. .....+...++....+.|+++|+||+|+..... .. .....+....+..
T Consensus 71 ~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 150 (174)
T cd01871 71 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 150 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCc
Confidence 89999999999987542 222222332332225799999999999964221 10 1111122222334
Q ss_pred cEEEcccCCCCCHHHHHHHHHhh
Q 015092 259 EVIPVSAKYGHGVEDIRDWILTK 281 (413)
Q Consensus 259 ~v~~iSA~~g~gv~~L~~~l~~~ 281 (413)
+++++||++|.|++++++.+.+.
T Consensus 151 ~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 151 KYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred EEEEecccccCCHHHHHHHHHHh
Confidence 78999999999999999998764
No 124
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.81 E-value=4.7e-19 Score=166.28 Aligned_cols=157 Identities=20% Similarity=0.241 Sum_probs=114.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeee-----------eC------CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhh
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-----------TN------KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~v-----------s~------~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 179 (413)
+|+++|++|+|||||+++|+.....+. ++ ..+.|.......+.+++.++++|||||+.+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~---- 76 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMD---- 76 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccc----
Confidence 489999999999999999986532211 11 112333344455678889999999999643
Q ss_pred hHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh--h-HHHHHHHHH----
Q 015092 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--E-IAKKLEWYE---- 252 (413)
Q Consensus 180 ~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~--~-~~~~~~~~~---- 252 (413)
+...+..+++.+|++++|+|++.+.......+++.++. .+.|+++|+||+|+...+ . +......+.
T Consensus 77 -----f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~--~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~ 149 (237)
T cd04168 77 -----FIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRK--LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIV 149 (237)
T ss_pred -----hHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeE
Confidence 23345667889999999999999887777777777766 689999999999997421 1 111111110
Q ss_pred -------------------------------------------------------hcCCCccEEEcccCCCCCHHHHHHH
Q 015092 253 -------------------------------------------------------KFTDVDEVIPVSAKYGHGVEDIRDW 277 (413)
Q Consensus 253 -------------------------------------------------------~~~~~~~v~~iSA~~g~gv~~L~~~ 277 (413)
....+.|+|+.||.++.|+..|++.
T Consensus 150 ~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~ 229 (237)
T cd04168 150 PMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEG 229 (237)
T ss_pred EEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHH
Confidence 0223569999999999999999999
Q ss_pred HHhhCCC
Q 015092 278 ILTKLPL 284 (413)
Q Consensus 278 l~~~l~~ 284 (413)
|..++|.
T Consensus 230 ~~~~~p~ 236 (237)
T cd04168 230 ITKLFPT 236 (237)
T ss_pred HHHhcCC
Confidence 9999975
No 125
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.81 E-value=4.3e-19 Score=169.49 Aligned_cols=113 Identities=19% Similarity=0.213 Sum_probs=88.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcee-----eee------------CCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhh
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLS-----IVT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~-----~vs------------~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 179 (413)
+|+|+|++|+|||||+|+|+..... .+. ...+.|.+.....+.+++.++++|||||+.+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d---- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD---- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH----
Confidence 4899999999999999999742211 111 2345666666667788899999999999643
Q ss_pred hHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCC
Q 015092 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (413)
Q Consensus 180 ~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~ 240 (413)
+...+..+++.+|++|+|+|+..+....+..++..++. .++|+++++||+|+..
T Consensus 77 -----f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~--~~~p~ivviNK~D~~~ 130 (270)
T cd01886 77 -----FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADR--YNVPRIAFVNKMDRTG 130 (270)
T ss_pred -----HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 33456677899999999999999988888888877766 6899999999999864
No 126
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.81 E-value=3.9e-19 Score=160.78 Aligned_cols=157 Identities=17% Similarity=0.160 Sum_probs=102.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceee-eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~-vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
+|+++|.+|||||||+++|.+..+.. ..++.+.+.......+......+.+|||||. ..+.. .....+..
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~--~~~~~-------~~~~~~~~ 72 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQ--ERFRS-------LNNSYYRG 72 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCc--HHHHh-------hHHHHccC
Confidence 79999999999999999999887643 1122222221111122233467889999994 33322 23445789
Q ss_pred ccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCCCHH
Q 015092 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (413)
Q Consensus 196 aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~gv~ 272 (413)
+|++|+|+|++++. .....|+....+......|+++|+||+|+.....+. .....+....++ +++++||++|.|++
T Consensus 73 ~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~~~~i~ 151 (188)
T cd04125 73 AHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNI-PFFETSAKQSINVE 151 (188)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCC-eEEEEeCCCCCCHH
Confidence 99999999998653 223333333322222468999999999987433221 112222222333 79999999999999
Q ss_pred HHHHHHHhhCC
Q 015092 273 DIRDWILTKLP 283 (413)
Q Consensus 273 ~L~~~l~~~l~ 283 (413)
+++++|.+.+.
T Consensus 152 ~~f~~l~~~~~ 162 (188)
T cd04125 152 EAFILLVKLII 162 (188)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 127
>PRK10218 GTP-binding protein; Provisional
Probab=99.81 E-value=6.7e-19 Score=184.44 Aligned_cols=201 Identities=17% Similarity=0.201 Sum_probs=140.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeee---------------eCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV---------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~v---------------s~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 180 (413)
.+|+|+|++++|||||+++|+.....+. ....+.|.......+.+++..+++|||||+.+ +
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~d--f-- 81 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD--F-- 81 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcch--h--
Confidence 4899999999999999999986432211 11334555555556778899999999999643 2
Q ss_pred HHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh---hHHHHHHHHHhcC--
Q 015092 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG---EIAKKLEWYEKFT-- 255 (413)
Q Consensus 181 l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~---~~~~~~~~~~~~~-- 255 (413)
...+..++..+|++|+|+|+..+...++..++..+.. .+.|.++|+||+|+.... .+.+....+....
T Consensus 82 -----~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~--~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~ 154 (607)
T PRK10218 82 -----GGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA--YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDAT 154 (607)
T ss_pred -----HHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH--cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcc
Confidence 2345566899999999999999887777777766655 688999999999987432 1222333332111
Q ss_pred ---CCccEEEcccCCCC----------CHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCce
Q 015092 256 ---DVDEVIPVSAKYGH----------GVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYA 322 (413)
Q Consensus 256 ---~~~~v~~iSA~~g~----------gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys 322 (413)
.-.|++++||++|. |+..|++.|.+.+|.+... .+.|.+..+.. + .+.+.+|..
T Consensus 155 ~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~------~~~Pl~~~V~k-----~--~~d~~~G~i 221 (607)
T PRK10218 155 DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVD------LDGPFQMQISQ-----L--DYNSYVGVI 221 (607)
T ss_pred ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCC------CCCCeEEEEEe-----e--EecCCCcEE
Confidence 12579999999998 6899999999999865321 11222211111 1 135678888
Q ss_pred eEEEEEEEEecCCCeeEE
Q 015092 323 CQVNVVSYKTRPTAKDFI 340 (413)
Q Consensus 323 ~~v~v~~~~~~~~~~~~i 340 (413)
+..+|.+|+.+.|..+.+
T Consensus 222 ~~gRV~sG~lk~Gd~v~~ 239 (607)
T PRK10218 222 GIGRIKRGKVKPNQQVTI 239 (607)
T ss_pred EEEEEEeCcCcCCCEEEE
Confidence 999999999988765544
No 128
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.81 E-value=5.1e-19 Score=161.58 Aligned_cols=162 Identities=18% Similarity=0.201 Sum_probs=106.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+++|.+|||||||+++|++..+. ..+..++.......+...+ ..+.+|||||.. .+..+ ...++.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~--~~~~~-------~~~~~~ 69 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSY--SFPAM-------RKLSIQ 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCch--hhhHH-------HHHHhh
Confidence 5899999999999999999987764 2333343322223334444 578899999953 33222 233578
Q ss_pred cccEEEEEeeCCCCC--chHHHHHHHHccccC-CCCCEEEEEecCCCCCh-hhHH--HHHHHHHhcCCCccEEEcccCCC
Q 015092 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKP-GEIA--KKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~-~~~~--~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
.+|++|+|+|++++. .....++..+..... .+.|+++|+||+|+... ..+. ....... .....+++++||++|
T Consensus 70 ~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~-~~~~~~~~~~Sa~~g 148 (198)
T cd04147 70 NSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE-LDWNCGFVETSAKDN 148 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH-hhcCCcEEEecCCCC
Confidence 999999999998753 222222222222111 57999999999999652 2111 1111111 112247899999999
Q ss_pred CCHHHHHHHHHhhCCCCCCCCC
Q 015092 269 HGVEDIRDWILTKLPLGPAYYP 290 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~~~~~~~~ 290 (413)
.|+++++++|.+.+...++..|
T Consensus 149 ~gv~~l~~~l~~~~~~~~~~~~ 170 (198)
T cd04147 149 ENVLEVFKELLRQANLPYNLSP 170 (198)
T ss_pred CCHHHHHHHHHHHhhcccccch
Confidence 9999999999998876666554
No 129
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.81 E-value=4.9e-19 Score=185.59 Aligned_cols=201 Identities=17% Similarity=0.190 Sum_probs=140.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceee-----e----------eCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhH
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSI-----V----------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML 181 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~-----v----------s~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l 181 (413)
+|+|+||+++|||||+++|+.....+ + ....+.|.......+.+.+..+++|||||+.+
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~D------ 76 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHAD------ 76 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHH------
Confidence 79999999999999999998632211 1 11234555555556778899999999999633
Q ss_pred HHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh--h-HHHHHHHHHhcC---
Q 015092 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--E-IAKKLEWYEKFT--- 255 (413)
Q Consensus 182 ~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~--~-~~~~~~~~~~~~--- 255 (413)
+...+..++..+|++|+|||+..+...++..++..+.. .+.|+++|+||+|+.... . ..+....+....
T Consensus 77 ---F~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~--~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~ 151 (594)
T TIGR01394 77 ---FGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADD 151 (594)
T ss_pred ---HHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHH--CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccc
Confidence 23345667889999999999999887777777776666 689999999999986432 2 222223332111
Q ss_pred --CCccEEEcccCCCC----------CHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCcee
Q 015092 256 --DVDEVIPVSAKYGH----------GVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYAC 323 (413)
Q Consensus 256 --~~~~v~~iSA~~g~----------gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~ 323 (413)
...|++++||++|. |+..|++.|.+.+|.+... .+.|.+..+..+ ...+.+|..+
T Consensus 152 e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~------~~~pl~~~V~~i-------~~d~~~Grv~ 218 (594)
T TIGR01394 152 EQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGD------LDEPLQMLVTNL-------DYDEYLGRIA 218 (594)
T ss_pred ccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCC------CCCCEEEEEEEE-------EeeCCCceEE
Confidence 12479999999996 8999999999999865321 112222111110 1256788899
Q ss_pred EEEEEEEEecCCCeeEEE
Q 015092 324 QVNVVSYKTRPTAKDFIQ 341 (413)
Q Consensus 324 ~v~v~~~~~~~~~~~~i~ 341 (413)
..++.+|+.+.|..+.+.
T Consensus 219 ~gRV~sG~lk~G~~V~~~ 236 (594)
T TIGR01394 219 IGRVHRGTVKKGQQVALM 236 (594)
T ss_pred EEEEEeCEEccCCEEEEe
Confidence 999999999887665543
No 130
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.81 E-value=6.8e-19 Score=155.99 Aligned_cols=157 Identities=23% Similarity=0.253 Sum_probs=101.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+++|++|+|||||+|+|++..... ...+....+..... +.....++.+|||||. ..+.. .....++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~--~~~~~-------~~~~~~~ 71 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQ--ERFQS-------LGVAFYR 71 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc-CcCCccceEEEEEEEEECCEEEEEEEEeCCCh--HHHHh-------HHHHHhc
Confidence 79999999999999999999887542 11122122222222 2223356789999994 33322 2345578
Q ss_pred cccEEEEEeeCCCCCc--hHHHHHHHHcccc----CCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccCC
Q 015092 195 NADCIVVLVDACKAPE--RIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~----~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
.+|++|+|+|++++.. ....+....+... ..+.|+++|+||+|+..+... ......+....+..+++++||++
T Consensus 72 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 151 (172)
T cd01862 72 GADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKE 151 (172)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCC
Confidence 9999999999987542 2222222222211 137899999999999732211 12222233334456899999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 015092 268 GHGVEDIRDWILTKLP 283 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~ 283 (413)
|.|+++++++|.+.+.
T Consensus 152 ~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 152 AINVEQAFETIARKAL 167 (172)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987654
No 131
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.81 E-value=4.7e-19 Score=156.13 Aligned_cols=146 Identities=16% Similarity=0.153 Sum_probs=99.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
+|+++|++|||||||+|+|.+.... . .+|... .+.. . .+|||||+.... ..+.+....++..|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~~~v---~~~~--~--~~iDtpG~~~~~-----~~~~~~~~~~~~~a 65 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKTQAV---EFND--K--GDIDTPGEYFSH-----PRWYHALITTLQDV 65 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C---ccceEE---EECC--C--CcccCCccccCC-----HHHHHHHHHHHhcC
Confidence 7999999999999999999886521 1 122111 1111 1 269999963221 11233344557899
Q ss_pred cEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHHH
Q 015092 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (413)
Q Consensus 197 D~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~ 276 (413)
|++|+|+|++.+......++... . .++|+++++||+|+.... .....+++.......|++++||++|.|+++|++
T Consensus 66 d~il~v~d~~~~~s~~~~~~~~~--~--~~~~ii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 66 DMLIYVHGANDPESRLPAGLLDI--G--VSKRQIAVISKTDMPDAD-VAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred CEEEEEEeCCCcccccCHHHHhc--c--CCCCeEEEEEccccCccc-HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 99999999987754444444432 1 467999999999986532 233334444443335899999999999999999
Q ss_pred HHHhhCCC
Q 015092 277 WILTKLPL 284 (413)
Q Consensus 277 ~l~~~l~~ 284 (413)
+|.+.+..
T Consensus 141 ~l~~~~~~ 148 (158)
T PRK15467 141 YLASLTKQ 148 (158)
T ss_pred HHHHhchh
Confidence 99988753
No 132
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.81 E-value=6.5e-19 Score=152.23 Aligned_cols=158 Identities=32% Similarity=0.369 Sum_probs=115.6
Q ss_pred EEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC-CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccE
Q 015092 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 198 (413)
Q Consensus 120 ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ 198 (413)
++|++|+|||||+|+|++......+..+++|........... ...+.+|||||+.... .........+..++..+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~--~~~~~~~~~~~~~~~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAG--GLGREREELARRVLERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccc--cchhhHHHHHHHHHHhCCE
Confidence 579999999999999999887766777777777666555544 6789999999975422 2222223445566789999
Q ss_pred EEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHH---HHHHhcCCCccEEEcccCCCCCHHHHH
Q 015092 199 IVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL---EWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (413)
Q Consensus 199 vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~---~~~~~~~~~~~v~~iSA~~g~gv~~L~ 275 (413)
+++|+|+..........+...... .+.|+++|+||+|+.......... ..........+++++||+++.|+.+++
T Consensus 79 il~v~~~~~~~~~~~~~~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 79 ILFVVDADLRADEEEEKLLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence 999999998765555443333333 689999999999998765544332 122233345689999999999999999
Q ss_pred HHHHhh
Q 015092 276 DWILTK 281 (413)
Q Consensus 276 ~~l~~~ 281 (413)
++|.+.
T Consensus 157 ~~l~~~ 162 (163)
T cd00880 157 EALIEA 162 (163)
T ss_pred HHHHhh
Confidence 999865
No 133
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.81 E-value=1.8e-18 Score=180.62 Aligned_cols=156 Identities=23% Similarity=0.276 Sum_probs=106.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCC-ceEEEEEEEEeC------------------CCeeEEEEeCCCC
Q 015092 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-TTRHRILGICSG------------------PEYQMILYDTPGI 173 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~-tt~~~~~~~~~~------------------~~~~~~l~DtpG~ 173 (413)
.|+|.|+++|++|+|||||+|+|++..+. ...++ +|++.....+.. ...++.||||||+
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~--~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~ 79 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVA--KREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGH 79 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccc--cccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCc
Confidence 47899999999999999999999998764 23333 343211111111 1124899999994
Q ss_pred chhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhh----------
Q 015092 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---------- 243 (413)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~---------- 243 (413)
..+..+ ....+..+|++++|+|++++...++...+..++. .+.|+++|+||+|+.....
T Consensus 80 --e~f~~l-------~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~ 148 (590)
T TIGR00491 80 --EAFTNL-------RKRGGALADLAILIVDINEGFKPQTQEALNILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMES 148 (590)
T ss_pred --HhHHHH-------HHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHH--cCCCEEEEEECCCccchhhhccCchHHHH
Confidence 444433 2334679999999999998877766666666665 6889999999999963210
Q ss_pred -------HHH--------HHHHHH-------------hcCCCccEEEcccCCCCCHHHHHHHHHhh
Q 015092 244 -------IAK--------KLEWYE-------------KFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (413)
Q Consensus 244 -------~~~--------~~~~~~-------------~~~~~~~v~~iSA~~g~gv~~L~~~l~~~ 281 (413)
+.. ....+. .+.+..+++++||++|+|+++|+.+|...
T Consensus 149 sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 149 FSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 000 000111 12344689999999999999999988654
No 134
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.81 E-value=8.6e-19 Score=154.63 Aligned_cols=154 Identities=12% Similarity=0.132 Sum_probs=101.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+++|.+|+|||||++++++..+.. ...+....+.....+... ...+.+|||||. ..+..+ ...++.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~--~~~~~~-------~~~~~~ 71 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHS-SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQ--ERYQTI-------TKQYYR 71 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEeCCCc--HhHHhh-------HHHHhc
Confidence 69999999999999999999877641 112222222222223333 357889999994 333322 334578
Q ss_pred cccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccCCCCCH
Q 015092 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gv 271 (413)
.+|++++|+|.++.. .....++.........+.|+++|+||+|+.....+ ......+.+..+ .+++++||++|.|+
T Consensus 72 ~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v 150 (161)
T cd04117 72 RAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYG-MDFFETSACTNSNI 150 (161)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 999999999988653 33333333322222246899999999999654332 122233333333 57999999999999
Q ss_pred HHHHHHHHhh
Q 015092 272 EDIRDWILTK 281 (413)
Q Consensus 272 ~~L~~~l~~~ 281 (413)
++++.+|.+.
T Consensus 151 ~~~f~~l~~~ 160 (161)
T cd04117 151 KESFTRLTEL 160 (161)
T ss_pred HHHHHHHHhh
Confidence 9999999865
No 135
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.81 E-value=6.6e-19 Score=163.01 Aligned_cols=156 Identities=19% Similarity=0.167 Sum_probs=102.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCce-EEEEEEEEeC---CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt-~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
+|+++|.+|||||||+++|.+..+. ..+..|. .+.....+.. ....+.+|||||. ..+..+ ...+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~--~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~--~~~~~l-------~~~~ 70 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFG--KSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ--SIGGKM-------LDKY 70 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC--CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCc--HHHHHH-------HHHH
Confidence 7999999999999999999987764 2333333 2332222322 2468899999994 333333 3334
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHcccc---CCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccC
Q 015092 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAK 266 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~---~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~ 266 (413)
+..||++|+|+|+++.. .....|+..+.+.. ..+.|+++|+||+|+.....+ ......+....+ .+++++||+
T Consensus 71 ~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~-~~~~~iSAk 149 (215)
T cd04109 71 IYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANG-MESCLVSAK 149 (215)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEECC
Confidence 78999999999998753 22223332222211 134689999999999743222 122223333333 478999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 015092 267 YGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 267 ~g~gv~~L~~~l~~~l~~ 284 (413)
+|.|+++++++|.+.+..
T Consensus 150 tg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 150 TGDRVNLLFQQLAAELLG 167 (215)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987653
No 136
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.81 E-value=7.4e-19 Score=154.33 Aligned_cols=152 Identities=20% Similarity=0.289 Sum_probs=100.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCce-EEEEEEE--Ee--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGI--CS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt-~~~~~~~--~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+|+++|.+|+|||||+++|++..+.. ....|. .+..... +. .....+.+|||||. ..+..+ ...
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--~~~~~~-------~~~ 70 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTK--DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ--EEFDAI-------TKA 70 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC--CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch--HHHHHh-------HHH
Confidence 79999999999999999999876542 222222 2221111 22 33567999999993 333332 344
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCC
Q 015092 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
+++.+|++++|+|++++. .....++... .....+.|+++|+||+|+.....+. .....+....+ .+++++||++|
T Consensus 71 ~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~ 148 (162)
T cd04106 71 YYRGAQACILVFSTTDRESFEAIESWKEKV-EAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQ-LPLFRTSVKDD 148 (162)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHH-HHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcC-CeEEEEECCCC
Confidence 578999999999998653 2223333222 2222579999999999997543221 11222222233 38999999999
Q ss_pred CCHHHHHHHHHhh
Q 015092 269 HGVEDIRDWILTK 281 (413)
Q Consensus 269 ~gv~~L~~~l~~~ 281 (413)
.|+++++++|...
T Consensus 149 ~~v~~l~~~l~~~ 161 (162)
T cd04106 149 FNVTELFEYLAEK 161 (162)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999764
No 137
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.81 E-value=8.4e-19 Score=152.11 Aligned_cols=153 Identities=21% Similarity=0.239 Sum_probs=100.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeee-eCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~v-s~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
+|+++|.+|+|||||+|+|.+...... ....+.+..............+.+|||||. ..+. ......++.
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~-------~~~~~~~~~ 72 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQ--ERFR-------SITPSYYRG 72 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCCh--HHHH-------HHHHHHhcC
Confidence 799999999999999999998887643 122222222222223334577899999994 2222 234555789
Q ss_pred ccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCC-ChhhHHHHHHHHHhcCCCccEEEcccCCCCCHH
Q 015092 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (413)
Q Consensus 196 aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~-~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~ 272 (413)
+|++++|+|++++. .....++...........|+++|+||+|+. ...........+... ...+++.+||++|.|++
T Consensus 73 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~ 151 (159)
T cd00154 73 AHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKE-NGLLFFETSAKTGENVE 151 (159)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHH-cCCeEEEEecCCCCCHH
Confidence 99999999998743 223333333333322469999999999996 222112222222222 23589999999999999
Q ss_pred HHHHHHH
Q 015092 273 DIRDWIL 279 (413)
Q Consensus 273 ~L~~~l~ 279 (413)
+++.+|.
T Consensus 152 ~~~~~i~ 158 (159)
T cd00154 152 ELFQSLA 158 (159)
T ss_pred HHHHHHh
Confidence 9999986
No 138
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.81 E-value=4.5e-19 Score=157.03 Aligned_cols=153 Identities=20% Similarity=0.178 Sum_probs=100.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+++|.+|||||||+++|++..+. .....+..+.... ........+.+|||||... +..+ ....+.
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~--~~~~-------~~~~~~ 70 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFP--TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEE--YDRL-------RPLSYP 70 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCccc--cccc-------chhhcC
Confidence 7999999999999999999988763 2222222222222 2233456799999999532 2222 122357
Q ss_pred cccEEEEEeeCCCCCch--HHHHHHHHccccCCCCCEEEEEecCCCCChhhH------------HHHHHHHHhcCCCccE
Q 015092 195 NADCIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI------------AKKLEWYEKFTDVDEV 260 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~~--~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~------------~~~~~~~~~~~~~~~v 260 (413)
.+|++++|+|++++... ....+...+.....+.|+++|+||+|+...... ......+....+..++
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 150 (171)
T cd00157 71 NTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGY 150 (171)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEE
Confidence 89999999999874322 222223333332257999999999999755432 1112223333344589
Q ss_pred EEcccCCCCCHHHHHHHHHh
Q 015092 261 IPVSAKYGHGVEDIRDWILT 280 (413)
Q Consensus 261 ~~iSA~~g~gv~~L~~~l~~ 280 (413)
+++||++|.|+.+++++|.+
T Consensus 151 ~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 151 MECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EEeecCCCCCHHHHHHHHhh
Confidence 99999999999999999875
No 139
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.81 E-value=6.9e-19 Score=185.04 Aligned_cols=199 Identities=24% Similarity=0.275 Sum_probs=131.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceee--------eeC------CCCceEEEEEEEE-----eCCCeeEEEEeCCCCchh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSI--------VTN------KPQTTRHRILGIC-----SGPEYQMILYDTPGIIEK 176 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~--------vs~------~~~tt~~~~~~~~-----~~~~~~~~l~DtpG~~~~ 176 (413)
.+++|+||.++|||||+++|+.....+ +.+ ..+.|.......+ ...+..++||||||+.+
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d- 86 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD- 86 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH-
Confidence 489999999999999999997643211 111 1233332222222 22357899999999643
Q ss_pred hhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCC
Q 015092 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (413)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (413)
+...+..++..||++|+|+|++++.+.++...+..+.. .+.|+++|+||+|+..... ......+....+
T Consensus 87 --------F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~--~~lpiIvViNKiDl~~a~~-~~v~~ei~~~lg 155 (600)
T PRK05433 87 --------FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--NDLEIIPVLNKIDLPAADP-ERVKQEIEDVIG 155 (600)
T ss_pred --------HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEEEECCCCCcccH-HHHHHHHHHHhC
Confidence 22335566889999999999999887666544444444 5789999999999864321 112222322222
Q ss_pred C--ccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHh-hcCCCCCceeEEEEEEEEec
Q 015092 257 V--DEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFM-QYRNEVPYACQVNVVSYKTR 333 (413)
Q Consensus 257 ~--~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~-~~~~eipys~~v~v~~~~~~ 333 (413)
+ ..++++||++|.|+++|+++|.+.+|.+... .+.|.+.+ ++. .+.+..|..+.+++.+|+.+
T Consensus 156 ~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~~------~~~pl~~~--------Vfd~~~d~~~G~v~~~rV~sG~Lk 221 (600)
T PRK05433 156 IDASDAVLVSAKTGIGIEEVLEAIVERIPPPKGD------PDAPLKAL--------IFDSWYDNYRGVVVLVRVVDGTLK 221 (600)
T ss_pred CCcceEEEEecCCCCCHHHHHHHHHHhCccccCC------CCCCceEE--------EEEEEecCCCceEEEEEEEcCEEe
Confidence 2 3589999999999999999999999754321 12222211 121 23577899999999999998
Q ss_pred CCCeeEE
Q 015092 334 PTAKDFI 340 (413)
Q Consensus 334 ~~~~~~i 340 (413)
.|..+.+
T Consensus 222 ~Gd~i~~ 228 (600)
T PRK05433 222 KGDKIKM 228 (600)
T ss_pred cCCEEEE
Confidence 8765544
No 140
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.81 E-value=5.2e-19 Score=190.04 Aligned_cols=163 Identities=26% Similarity=0.315 Sum_probs=121.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh----hhHHHHHHHHH
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI----HMLDSMMMKNV 189 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~----~~l~~~~~~~~ 189 (413)
+..+|+++|+||+|||||+|+|+|.+. .+++.+|+|.+...+.+.+++.++.++||||+.+... ..+++......
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 345899999999999999999999876 4789999999999999999999999999999754221 12333322221
Q ss_pred HhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCC
Q 015092 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 190 ~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
-....+|++++|+|+++..... .+...+.+ .+.|+++|+||+|+.+........+.+.+..+ .+++++||++|.
T Consensus 81 -l~~~~aD~vI~VvDat~ler~l--~l~~ql~e--~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG-~pVvpiSA~~g~ 154 (772)
T PRK09554 81 -ILSGDADLLINVVDASNLERNL--YLTLQLLE--LGIPCIVALNMLDIAEKQNIRIDIDALSARLG-CPVIPLVSTRGR 154 (772)
T ss_pred -HhccCCCEEEEEecCCcchhhH--HHHHHHHH--cCCCEEEEEEchhhhhccCcHHHHHHHHHHhC-CCEEEEEeecCC
Confidence 1235899999999998754332 23333444 58999999999998754444333444444444 489999999999
Q ss_pred CHHHHHHHHHhhCC
Q 015092 270 GVEDIRDWILTKLP 283 (413)
Q Consensus 270 gv~~L~~~l~~~l~ 283 (413)
|++++++.+.+..+
T Consensus 155 GIdeL~~~I~~~~~ 168 (772)
T PRK09554 155 GIEALKLAIDRHQA 168 (772)
T ss_pred CHHHHHHHHHHhhh
Confidence 99999999988764
No 141
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.81 E-value=5.3e-19 Score=157.36 Aligned_cols=155 Identities=17% Similarity=0.162 Sum_probs=102.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+++|++|+|||||++++.+..+. ....++........+..+ ...+.+|||||. ..+..+ ....+.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~ 70 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ--EDYDRL-------RPLSYP 70 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCc--cccccc-------ccccCC
Confidence 7999999999999999999988764 333344433333233333 345789999994 333322 223478
Q ss_pred cccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-------------HHHHHHHhcCCCcc
Q 015092 195 NADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTDVDE 259 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-------------~~~~~~~~~~~~~~ 259 (413)
.+|++++|+|.+++.. .....+...++....+.|+++|+||+|+.+..... .....+....+..+
T Consensus 71 ~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 150 (174)
T cd04135 71 MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHC 150 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCE
Confidence 9999999999987532 22222333333323689999999999986432111 11122223334457
Q ss_pred EEEcccCCCCCHHHHHHHHHhhC
Q 015092 260 VIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 260 v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
++++||++|.|++++++.+...+
T Consensus 151 ~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 151 YVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred EEEecCCcCCCHHHHHHHHHHHh
Confidence 89999999999999999988654
No 142
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.81 E-value=9.6e-19 Score=158.70 Aligned_cols=156 Identities=16% Similarity=0.168 Sum_probs=104.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCC-CceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~-~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
..+|+++|.+|||||||+.++....+. .... ..+.+.....+..+ ...+.+|||||. ..+..+ +..
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~--~~~~~l-------~~~ 74 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTE--SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQ--GRFCTI-------FRS 74 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCcceeEEEEEEEEECCEEEEEEEEeCCCc--HHHHHH-------HHH
Confidence 358999999999999999999986653 2221 22222222223333 367899999994 333332 344
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccCCC
Q 015092 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
+++.+|++|+|+|++++. .....|+.++ .....+.|++||+||+|+.....+ ......+....+ .+++++||++|
T Consensus 75 ~~~~ad~illVfD~t~~~Sf~~~~~w~~~i-~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~-~~~~e~SAk~g 152 (189)
T cd04121 75 YSRGAQGIILVYDITNRWSFDGIDRWIKEI-DEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNG-MTFFEVSPLCN 152 (189)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHH-HHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcC-CEEEEecCCCC
Confidence 578999999999998764 3344444443 322367999999999999643222 112223333233 47999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015092 269 HGVEDIRDWILTKLP 283 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~ 283 (413)
.||+++|++|.+.+.
T Consensus 153 ~~V~~~F~~l~~~i~ 167 (189)
T cd04121 153 FNITESFTELARIVL 167 (189)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998664
No 143
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.81 E-value=2.2e-19 Score=182.76 Aligned_cols=149 Identities=21% Similarity=0.183 Sum_probs=105.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeee------------------------------CCCCceEEEEEEEEeCCCe
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT------------------------------NKPQTTRHRILGICSGPEY 163 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs------------------------------~~~~tt~~~~~~~~~~~~~ 163 (413)
...+|+++|++|+|||||+++|+.....+.. ..+|+|++.....+.+++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 3458999999999999999999855433211 1578899988888888999
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCC--CCchHHHHHHHHccccCCC-CCEEEEEecCCCCC
Q 015092 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK--APERIDEILEEGVGDHKDK-LPILLVLNKKDLIK 240 (413)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~--~~~~~~~~l~~~l~~~~~~-~p~ilV~NK~Dl~~ 240 (413)
++.||||||+.+ +...+...+..+|++|+|+|+++ +...++.+.+.+++. .+ .|+++|+||+|+..
T Consensus 85 ~i~liDtpG~~~---------~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~--~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 85 YFTIVDCPGHRD---------FVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART--LGINQLIVAINKMDAVN 153 (425)
T ss_pred EEEEEECCCccc---------chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH--cCCCeEEEEEEcccccc
Confidence 999999999532 22233444678999999999998 665555555555444 34 46899999999975
Q ss_pred h--hhHHH----HHHHHHhcC---CCccEEEcccCCCCCHHH
Q 015092 241 P--GEIAK----KLEWYEKFT---DVDEVIPVSAKYGHGVED 273 (413)
Q Consensus 241 ~--~~~~~----~~~~~~~~~---~~~~v~~iSA~~g~gv~~ 273 (413)
. ..... ....+.... ...+++++||++|.|+++
T Consensus 154 ~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 154 YDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 2 11111 112222211 125799999999999986
No 144
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.81 E-value=1.2e-18 Score=157.13 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=103.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+..+|+++|.+|||||||++++....+.. ...|+... ...+...+..+.+|||||. ..+. ..+..++
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~---~~~T~~~~-~~~~~~~~~~~~l~D~~G~--~~~~-------~~~~~~~ 82 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT---TIPTIGFN-VETVEYKNLKFTMWDVGGQ--DKLR-------PLWRHYY 82 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCccccc-eEEEEECCEEEEEEECCCC--HhHH-------HHHHHHh
Confidence 34689999999999999999997655532 22222221 2234556789999999994 3322 2345568
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHhc---CCCccEEEcccCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~ 267 (413)
..+|++|+|+|+++.. .....++.+.+... ..+.|+++|+||+|+............+... .....++++||++
T Consensus 83 ~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~t 162 (182)
T PTZ00133 83 QNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATT 162 (182)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCC
Confidence 8999999999997643 23333444443321 1468999999999986532222222222111 0112467899999
Q ss_pred CCCHHHHHHHHHhhCC
Q 015092 268 GHGVEDIRDWILTKLP 283 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~ 283 (413)
|.|+++++++|.+.+.
T Consensus 163 g~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 163 AQGLYEGLDWLSANIK 178 (182)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987654
No 145
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.81 E-value=1e-18 Score=152.87 Aligned_cols=155 Identities=22% Similarity=0.312 Sum_probs=99.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+++|.+|+|||||+|+|++..+.. ...+.++.......+. .....+.+|||||. ..+..+ ....+.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~--~~~~~~-------~~~~~~ 71 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQ--ERYHAL-------GPIYYR 71 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCch--HHHHHh-------hHHHhc
Confidence 79999999999999999999887642 1222222222222222 33457899999993 333322 233467
Q ss_pred cccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCCCH
Q 015092 195 NADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGV 271 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~gv 271 (413)
.+|++++|+|++++.. ....++.++......+.|+++|+||+|+.....+. .....+.... ..+++++||++|.|+
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~gi 150 (162)
T cd04123 72 DADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSV-GAKHFETSAKTGKGI 150 (162)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHc-CCEEEEEeCCCCCCH
Confidence 8999999999987542 22233222222222468999999999997433221 1112222222 247899999999999
Q ss_pred HHHHHHHHhhC
Q 015092 272 EDIRDWILTKL 282 (413)
Q Consensus 272 ~~L~~~l~~~l 282 (413)
++++++|.+.+
T Consensus 151 ~~~~~~l~~~~ 161 (162)
T cd04123 151 EELFLSLAKRM 161 (162)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 146
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.81 E-value=9e-19 Score=162.42 Aligned_cols=154 Identities=19% Similarity=0.293 Sum_probs=103.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
+|+++|.+|||||||+++|+...+.. ...|... ......+....+.+|||||. ..+..+ ...+++.+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~---~~~Tig~-~~~~~~~~~~~l~iwDt~G~--e~~~~l-------~~~~~~~a 68 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD---TVSTVGG-AFYLKQWGPYNISIWDTAGR--EQFHGL-------GSMYCRGA 68 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---CCCccce-EEEEEEeeEEEEEEEeCCCc--ccchhh-------HHHHhccC
Confidence 79999999999999999999888742 1222211 11222335578999999994 344433 23347899
Q ss_pred cEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCC-------------------hhhH--HHHHHHHHh
Q 015092 197 DCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIK-------------------PGEI--AKKLEWYEK 253 (413)
Q Consensus 197 D~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~-------------------~~~~--~~~~~~~~~ 253 (413)
|++|+|+|+++.. .....++..+.+....+.|+|+|+||+|+.. ...+ .+...+...
T Consensus 69 d~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~ 148 (220)
T cd04126 69 AAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKR 148 (220)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHH
Confidence 9999999998753 3344444444433235689999999999964 1111 112222222
Q ss_pred cCC------------CccEEEcccCCCCCHHHHHHHHHhhCC
Q 015092 254 FTD------------VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 254 ~~~------------~~~v~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
... ..++++|||++|.||++++..+++.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 149 INKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred hCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 211 147899999999999999999987654
No 147
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.81 E-value=7.9e-19 Score=156.47 Aligned_cols=156 Identities=22% Similarity=0.259 Sum_probs=103.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCce-EEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt-~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+|+++|.+|||||||++++++..+. ..+..|. .......+. .....+.+|||||. ..+..+ ...++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD--KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQ--ERFKCI-------ASTYY 70 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeEEEEEEEEECCEEEEEEEEeCCCh--HHHHhh-------HHHHh
Confidence 7999999999999999999988764 2222232 222222222 23467899999994 333322 34458
Q ss_pred ccccEEEEEeeCCCC--CchHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhH---HHHHHHHHhcCCCccEEEcccCC
Q 015092 194 INADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI---AKKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~--~~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~---~~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
+.+|++++|+|+++. ......|+....+.. ....|+++|+||+|+.+.... ......+....+ .+++++||++
T Consensus 71 ~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~ 149 (170)
T cd04108 71 RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ-AEYWSVSALS 149 (170)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcC-CeEEEEECCC
Confidence 899999999999873 233444444433321 134679999999998654321 112222222222 4789999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 015092 268 GHGVEDIRDWILTKLPL 284 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~~ 284 (413)
|.|+++++..|.+.+.+
T Consensus 150 g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 150 GENVREFFFRVAALTFE 166 (170)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887653
No 148
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.80 E-value=1.2e-18 Score=156.11 Aligned_cols=155 Identities=18% Similarity=0.169 Sum_probs=100.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCce-EEEEEEEEe------------CCCeeEEEEeCCCCchhhhhhHH
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGICS------------GPEYQMILYDTPGIIEKKIHMLD 182 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt-~~~~~~~~~------------~~~~~~~l~DtpG~~~~~~~~l~ 182 (413)
.+|+++|.+|||||||++++.+..+.. ....|. .+.....+. .....+.+||||| +..+..+
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~~- 79 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNP--KFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAG--QERFRSL- 79 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCc--cCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCC--hHHHHHH-
Confidence 589999999999999999998876531 111111 111111111 2236789999999 3333322
Q ss_pred HHHHHHHHhhcccccEEEEEeeCCCCC--chHHHHHHHHccc-cCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCc
Q 015092 183 SMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVD 258 (413)
Q Consensus 183 ~~~~~~~~~~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~-~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~ 258 (413)
...+++.+|++++|+|+++.. .....|+...... ...+.|+++|+||+|+.....+. .....+....+ .
T Consensus 80 ------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~-~ 152 (180)
T cd04127 80 ------TTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYG-I 152 (180)
T ss_pred ------HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcC-C
Confidence 444578999999999998643 2233333332221 11468999999999996532221 11222222223 4
Q ss_pred cEEEcccCCCCCHHHHHHHHHhhC
Q 015092 259 EVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 259 ~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
+++++||++|.|++++++.|.+.+
T Consensus 153 ~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 153 PYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 799999999999999999998754
No 149
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.80 E-value=1.2e-18 Score=152.14 Aligned_cols=154 Identities=21% Similarity=0.231 Sum_probs=103.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+++|++|||||||+++|++..+ ......++.+.....+..+ ...+.+|||||. .....+ ....+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~~-------~~~~~~ 69 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF--VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQ--EEFSAM-------RDLYIR 69 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CcCcCCChhHeEEEEEEECCEEEEEEEEECCCh--HHHHHH-------HHHHHh
Confidence 589999999999999999998774 3555555555444444444 467899999994 222222 233477
Q ss_pred cccEEEEEeeCCCCC--chHHHHHHHHccccC-CCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccCCCCC
Q 015092 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
.+|++++|+|.+++. .....++........ ...|+++|+||+|+...... ......+..... .+++++||++|.|
T Consensus 70 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~ 148 (160)
T cd00876 70 QGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG-CPFIETSAKDNIN 148 (160)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcC-CcEEEeccCCCCC
Confidence 899999999987653 222222322222211 47999999999999753221 112222222222 5899999999999
Q ss_pred HHHHHHHHHhhC
Q 015092 271 VEDIRDWILTKL 282 (413)
Q Consensus 271 v~~L~~~l~~~l 282 (413)
+++++.+|.+.+
T Consensus 149 i~~l~~~l~~~i 160 (160)
T cd00876 149 IDEVFKLLVREI 160 (160)
T ss_pred HHHHHHHHHhhC
Confidence 999999998653
No 150
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.80 E-value=1.4e-18 Score=157.58 Aligned_cols=155 Identities=17% Similarity=0.225 Sum_probs=100.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEE-EEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI-LGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~-~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+|+++|.+|||||||+++|++..+. ...+..|..... ...+..+ ...+.+|||||. ..+..+ ....+
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~--~~~~~~-------~~~~~ 71 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFL-VGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS--ERYEAM-------SRIYY 71 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcC-CcCcccceeeEEEEEEEEECCEEEEEEEEECCCc--hhhhhh-------hHhhc
Confidence 7999999999999999999987764 222333333222 2223333 346779999994 333322 23347
Q ss_pred ccccEEEEEeeCCCCCch--HHHHHHHHccccCCCCCEEEEEecCCCCChh----hHH-HHHHHHHhcCCCccEEEcccC
Q 015092 194 INADCIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIA-KKLEWYEKFTDVDEVIPVSAK 266 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~~~--~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~----~~~-~~~~~~~~~~~~~~v~~iSA~ 266 (413)
..+|++|+|+|+++.... ...++ ..++....+.|+++|+||+|+.... .+. .....+....+ .+++++||+
T Consensus 72 ~~~d~iilv~d~~~~~s~~~~~~~~-~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~ 149 (193)
T cd04118 72 RGAKAAIVCYDLTDSSSFERAKFWV-KELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-AQHFETSSK 149 (193)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHH-HHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcC-CeEEEEeCC
Confidence 799999999999765322 22333 3333323578999999999986432 110 11122222222 478999999
Q ss_pred CCCCHHHHHHHHHhhCC
Q 015092 267 YGHGVEDIRDWILTKLP 283 (413)
Q Consensus 267 ~g~gv~~L~~~l~~~l~ 283 (413)
+|.|+++|+++|.+.+-
T Consensus 150 ~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 150 TGQNVDELFQKVAEDFV 166 (193)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999997663
No 151
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.80 E-value=9.8e-19 Score=155.70 Aligned_cols=159 Identities=18% Similarity=0.170 Sum_probs=102.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEE-EEEEE--eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR-ILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~-~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
+..+|+++|.+|||||||++++++..+. +..+.+|+... ....+ ......+.+|||+|. ..+..+ ..
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~--~~~~~~-------~~ 72 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGED--EVAILL-------ND 72 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCc--cccccc-------ch
Confidence 3458999999999999999999998764 23344443322 11222 233357889999994 333222 23
Q ss_pred hhcccccEEEEEeeCCCCCchHH-HHHHHHccccCCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccCCC
Q 015092 191 SAGINADCIVVLVDACKAPERID-EILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~~~~~-~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
.++..||++|+|+|++++..-.. ..+...+.. ..+.|+++|+||+|+.+.... ......+....+...++++||++|
T Consensus 73 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~-~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (169)
T cd01892 73 AELAACDVACLVYDSSDPKSFSYCAEVYKKYFM-LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLG 151 (169)
T ss_pred hhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhcc-CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccC
Confidence 34689999999999977532111 122222222 147999999999999643321 111223333334445699999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015092 269 HGVEDIRDWILTKLP 283 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~ 283 (413)
.|++++++.|.+.+.
T Consensus 152 ~~v~~lf~~l~~~~~ 166 (169)
T cd01892 152 DSSNELFTKLATAAQ 166 (169)
T ss_pred ccHHHHHHHHHHHhh
Confidence 999999999988764
No 152
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.80 E-value=1.5e-18 Score=156.55 Aligned_cols=156 Identities=17% Similarity=0.149 Sum_probs=103.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEE--eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
..+|+++|.++||||||+++++...+. ..+.+|........+ ......+.+|||+| ++.+..+ ...+
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~--~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG--~e~~~~~-------~~~~ 73 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSG--SPYYDNV-------RPLS 73 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCC--CccCCceeeeeEEEEEECCEEEEEEEEECCC--chhhHhh-------hhhh
Confidence 348999999999999999999987764 233333322222222 33346789999999 4444433 3345
Q ss_pred cccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCCh------------hhH-HHHHHHHHhcCCC
Q 015092 193 GINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKP------------GEI-AKKLEWYEKFTDV 257 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~------------~~~-~~~~~~~~~~~~~ 257 (413)
++.||++|+|+|.++... .....+...++...++.|++||+||+|+... ..+ ......+.+..+.
T Consensus 74 ~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 153 (182)
T cd04172 74 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGA 153 (182)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCC
Confidence 889999999999987642 2212233333333357999999999998531 011 1223334433444
Q ss_pred ccEEEcccCCCCC-HHHHHHHHHhh
Q 015092 258 DEVIPVSAKYGHG-VEDIRDWILTK 281 (413)
Q Consensus 258 ~~v~~iSA~~g~g-v~~L~~~l~~~ 281 (413)
.++++|||++|.| |+++|..+...
T Consensus 154 ~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 154 ATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CEEEECCcCCCCCCHHHHHHHHHHH
Confidence 5799999999998 99999988764
No 153
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.80 E-value=1.6e-18 Score=152.11 Aligned_cols=153 Identities=20% Similarity=0.193 Sum_probs=102.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+++|.+|||||||+++|+...+. ....+++.+....... .....+.+|||||. ..+.. ....+++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--~~~~~-------~~~~~~~ 70 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQ--EDYAA-------IRDNYHR 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCCh--hhhhH-------HHHHHhh
Confidence 7999999999999999999987654 3444444433333333 33467899999994 33322 2334578
Q ss_pred cccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChh--hHHHHHHHHHhcCCCccEEEcccCCCC
Q 015092 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
.+|++++|+|.+++. .....++....+.. ..++|+++|+||+|+.... ........... .+ .+++++||++|.
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~ 148 (164)
T cd04139 71 SGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQ-WG-VPYVETSAKTRQ 148 (164)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHH-hC-CeEEEeeCCCCC
Confidence 999999999987643 22333333333321 2579999999999997521 11222222222 22 489999999999
Q ss_pred CHHHHHHHHHhhC
Q 015092 270 GVEDIRDWILTKL 282 (413)
Q Consensus 270 gv~~L~~~l~~~l 282 (413)
|++++++.|.+.+
T Consensus 149 gi~~l~~~l~~~~ 161 (164)
T cd04139 149 NVEKAFYDLVREI 161 (164)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 154
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.80 E-value=1.2e-18 Score=159.28 Aligned_cols=156 Identities=18% Similarity=0.197 Sum_probs=102.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCce-EEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt-~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
..+|+++|.+|||||||+++|.+..+.. .+..|. .+.....+. .....+.+|||||. ..+..+ ...
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~--~~~~~~-------~~~ 74 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSG--SYITTIGVDFKIRTVEINGERVKLQIWDTAGQ--ERFRTI-------TST 74 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC--CcCccccceeEEEEEEECCEEEEEEEEeCCCc--hhHHHH-------HHH
Confidence 3589999999999999999999877531 111221 111111222 23357889999994 333322 344
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCC
Q 015092 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
++..+|++++|+|++++. .....++.. +.......|+++|+||+|+.....+. .....+....+ .+++++||++|
T Consensus 75 ~~~~a~~iilv~D~~~~~s~~~~~~~~~~-i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~ 152 (199)
T cd04110 75 YYRGTHGVIVVYDVTNGESFVNVKRWLQE-IEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMG-ISLFETSAKEN 152 (199)
T ss_pred HhCCCcEEEEEEECCCHHHHHHHHHHHHH-HHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEECCCC
Confidence 578899999999998754 223333333 33323578999999999997543221 11222222223 57999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015092 269 HGVEDIRDWILTKLP 283 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~ 283 (413)
.|+++++++|.+.+.
T Consensus 153 ~gi~~lf~~l~~~~~ 167 (199)
T cd04110 153 INVEEMFNCITELVL 167 (199)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999988663
No 155
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.80 E-value=1.3e-18 Score=156.34 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=101.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEE--eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+++|.+|||||||++++.+..+. ..+.+|........+ ......+.+||||| ++.+..+ ...+++
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G--~~~~~~~-------~~~~~~ 71 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYP--ETYVPTVFENYTASFEIDEQRIELSLWDTSG--SPYYDNV-------RPLCYP 71 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--CCcCCceEEEEEEEEEECCEEEEEEEEECCC--chhhhhc-------chhhcC
Confidence 7999999999999999999987764 233333322222222 23346788999999 4444333 233578
Q ss_pred cccEEEEEeeCCCCCc--hH-HHHHHHHccccCCCCCEEEEEecCCCCCh------------hhH-HHHHHHHHhcCCCc
Q 015092 195 NADCIVVLVDACKAPE--RI-DEILEEGVGDHKDKLPILLVLNKKDLIKP------------GEI-AKKLEWYEKFTDVD 258 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~--~~-~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~------------~~~-~~~~~~~~~~~~~~ 258 (413)
.||++|+|+|.++... .. ..|+ ..++...++.|+++|+||+|+... ..+ .+....+....+..
T Consensus 72 ~a~~~ilvfdit~~~Sf~~~~~~w~-~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~ 150 (178)
T cd04131 72 DSDAVLICFDISRPETLDSVLKKWR-GEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAE 150 (178)
T ss_pred CCCEEEEEEECCChhhHHHHHHHHH-HHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCC
Confidence 9999999999987642 22 2333 333333367999999999998531 011 12233344434444
Q ss_pred cEEEcccCCCCC-HHHHHHHHHhh
Q 015092 259 EVIPVSAKYGHG-VEDIRDWILTK 281 (413)
Q Consensus 259 ~v~~iSA~~g~g-v~~L~~~l~~~ 281 (413)
++++|||++|.| |+++|..+.+.
T Consensus 151 ~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 151 IYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred EEEECccCcCCcCHHHHHHHHHHH
Confidence 789999999995 99999998763
No 156
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.80 E-value=2.1e-18 Score=152.68 Aligned_cols=157 Identities=19% Similarity=0.195 Sum_probs=102.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
..+|+++|++|||||||+++|.+..+.. ...+..+.+.....+...+ ..+.+|||||. ..+. .....+
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~--~~~~-------~~~~~~ 76 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQ--ERFR-------SITQSY 76 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCc--HHHH-------HHHHHH
Confidence 3589999999999999999998765431 1222222233333333443 56889999994 2222 223445
Q ss_pred cccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCC
Q 015092 193 GINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
+..+|++++|+|++++.. ....++..+......+.|+++|+||+|+.....+. .....+..... .+++++||++|.
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~-~~~~~~Sa~~~~ 155 (169)
T cd04114 77 YRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQD-MYYLETSAKESD 155 (169)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcC-CeEEEeeCCCCC
Confidence 789999999999886532 22233322211112468999999999997543322 22333433333 578999999999
Q ss_pred CHHHHHHHHHhhC
Q 015092 270 GVEDIRDWILTKL 282 (413)
Q Consensus 270 gv~~L~~~l~~~l 282 (413)
|++++++.|.+.+
T Consensus 156 gv~~l~~~i~~~~ 168 (169)
T cd04114 156 NVEKLFLDLACRL 168 (169)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998653
No 157
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.9e-18 Score=151.46 Aligned_cols=166 Identities=22% Similarity=0.218 Sum_probs=119.1
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCceeee-eCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHH
Q 015092 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (413)
Q Consensus 111 ~~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~v-s~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~ 189 (413)
...+..+|+++|..+||||||+++++...+... ..+.|.........+....+.+.+|||+| ++.++.+ +
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAG--QERFrsl-------i 88 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG--QERFRSL-------I 88 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEeccc--HHHHhhh-------h
Confidence 344557999999999999999999998876521 11112111111222334457899999999 6666655 6
Q ss_pred HhhcccccEEEEEeeCCCC--CchHHHHHHHHccccCC-CCCEEEEEecCCCCChhhHHHHHHH-HHhcCCCccEEEccc
Q 015092 190 RSAGINADCIVVLVDACKA--PERIDEILEEGVGDHKD-KLPILLVLNKKDLIKPGEIAKKLEW-YEKFTDVDEVIPVSA 265 (413)
Q Consensus 190 ~~~~~~aD~vl~VvD~~~~--~~~~~~~l~~~l~~~~~-~~p~ilV~NK~Dl~~~~~~~~~~~~-~~~~~~~~~v~~iSA 265 (413)
.++++++.++|+|+|.++. ++....|+....+.... +.-++||+||.||.+++++...... ..+..+ ..++.+||
T Consensus 89 psY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~-a~f~etsa 167 (221)
T KOG0094|consen 89 PSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELN-AEFIETSA 167 (221)
T ss_pred hhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhC-cEEEEecc
Confidence 6779999999999999864 46778888887776444 3567889999999987665432222 222222 37899999
Q ss_pred CCCCCHHHHHHHHHhhCCCCC
Q 015092 266 KYGHGVEDIRDWILTKLPLGP 286 (413)
Q Consensus 266 ~~g~gv~~L~~~l~~~l~~~~ 286 (413)
+.|.||..||..|...+|...
T Consensus 168 k~g~NVk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 168 KAGENVKQLFRRIAAALPGME 188 (221)
T ss_pred cCCCCHHHHHHHHHHhccCcc
Confidence 999999999999999998643
No 158
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=2.1e-18 Score=171.51 Aligned_cols=198 Identities=25% Similarity=0.247 Sum_probs=140.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceee--------------eeCCCCceEEEEEEEEeCCC---eeEEEEeCCCCchhhh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSI--------------VTNKPQTTRHRILGICSGPE---YQMILYDTPGIIEKKI 178 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~--------------vs~~~~tt~~~~~~~~~~~~---~~~~l~DtpG~~~~~~ 178 (413)
.+++||.|.+.|||||.++|+.....+ +....|.|......-+.+.+ +.+++|||||+.+.+.
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~ 140 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG 140 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence 379999999999999999997543321 22333444444444344444 8899999999887543
Q ss_pred hhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh--hHHHHHHHHHhcCC
Q 015092 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTD 256 (413)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~~~~~ 256 (413)
++.+.+..||.+|+|||++.|.+.++..-..+.-+ .+..+|.|+||+|+...+ .+......+-.. .
T Consensus 141 ---------EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe--~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~-~ 208 (650)
T KOG0462|consen 141 ---------EVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE--AGLAIIPVLNKIDLPSADPERVENQLFELFDI-P 208 (650)
T ss_pred ---------eehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH--cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcC-C
Confidence 34555789999999999999998877655444333 689999999999998543 333222222111 2
Q ss_pred CccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCC
Q 015092 257 VDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTA 336 (413)
Q Consensus 257 ~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~~v~v~~~~~~~~~ 336 (413)
..+++.+||++|.|+.+++++|++.+|++.. ..+.|.|.++-+ ..+++..|-...+++..|..+.|.
T Consensus 209 ~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~------~~d~plr~Lifd-------s~yD~y~G~I~~vrv~~G~vrkGd 275 (650)
T KOG0462|consen 209 PAEVIYVSAKTGLNVEELLEAIIRRVPPPKG------IRDAPLRMLIFD-------SEYDEYRGVIALVRVVDGVVRKGD 275 (650)
T ss_pred ccceEEEEeccCccHHHHHHHHHhhCCCCCC------CCCcchHHHhhh-------hhhhhhcceEEEEEEeeeeeecCC
Confidence 3579999999999999999999999986554 334555543332 345778899999999999888664
Q ss_pred ee
Q 015092 337 KD 338 (413)
Q Consensus 337 ~~ 338 (413)
.+
T Consensus 276 kV 277 (650)
T KOG0462|consen 276 KV 277 (650)
T ss_pred EE
Confidence 43
No 159
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.79 E-value=1.6e-18 Score=154.45 Aligned_cols=156 Identities=20% Similarity=0.190 Sum_probs=100.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.+|+++|++|||||||+++|.+..+. ..+..+........+. .....+.+|||||. ..+..+ ....+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQ--EDYDRL-------RPLSY 70 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccccceEEEEEECCEEEEEEEEeCCCc--hhhhhc-------ccccc
Confidence 37999999999999999999987764 2223333222222222 23457899999995 222222 12346
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-------------HHHHHHHhcCCCc
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTDVD 258 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-------------~~~~~~~~~~~~~ 258 (413)
..+|++++|+|+++.. ......+...++....+.|+++|+||+|+....... .....+....+..
T Consensus 71 ~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~ 150 (175)
T cd01870 71 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAF 150 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCc
Confidence 8999999999988643 222222222233322578999999999986432211 1111222222345
Q ss_pred cEEEcccCCCCCHHHHHHHHHhhC
Q 015092 259 EVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 259 ~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
+++++||++|.|+++++++|.+.+
T Consensus 151 ~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 151 GYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EEEEeccccCcCHHHHHHHHHHHh
Confidence 799999999999999999998654
No 160
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.4e-18 Score=178.55 Aligned_cols=165 Identities=27% Similarity=0.292 Sum_probs=129.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
..+||++|.||||||||+|+|+|.+.. |.+.||+|.+...+.+...+.++.++|+||...-...+.++...+.... -.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~-VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll-~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQK-VGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLL-EG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCce-ecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHh-cC
Confidence 346999999999999999999998876 8999999999999999999999999999998775555555555444432 24
Q ss_pred cccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHH
Q 015092 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L 274 (413)
.+|+++-|+|+++-... ....++++. -+.|+++++|++|..++..+.-..+.+++..+ .|++++||++|.|++++
T Consensus 81 ~~D~ivnVvDAtnLeRn-LyltlQLlE---~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG-vPVv~tvA~~g~G~~~l 155 (653)
T COG0370 81 KPDLIVNVVDATNLERN-LYLTLQLLE---LGIPMILALNMIDEAKKRGIRIDIEKLSKLLG-VPVVPTVAKRGEGLEEL 155 (653)
T ss_pred CCCEEEEEcccchHHHH-HHHHHHHHH---cCCCeEEEeccHhhHHhcCCcccHHHHHHHhC-CCEEEEEeecCCCHHHH
Confidence 68999999999874333 222333332 58999999999998766554444445555555 49999999999999999
Q ss_pred HHHHHhhCCCCC
Q 015092 275 RDWILTKLPLGP 286 (413)
Q Consensus 275 ~~~l~~~l~~~~ 286 (413)
++.+.+..+...
T Consensus 156 ~~~i~~~~~~~~ 167 (653)
T COG0370 156 KRAIIELAESKT 167 (653)
T ss_pred HHHHHHhccccc
Confidence 999998776554
No 161
>PRK12736 elongation factor Tu; Reviewed
Probab=99.79 E-value=1.2e-18 Score=175.42 Aligned_cols=203 Identities=17% Similarity=0.130 Sum_probs=135.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCcee------e---------eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS------I---------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~------~---------vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 178 (413)
...+|+++||+++|||||+++|++.... . .....+.|.+.....+..++.++.|+||||+. .
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~--~- 87 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA--D- 87 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH--H-
Confidence 3458999999999999999999863210 0 11255677776666666677899999999952 1
Q ss_pred hhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCC-EEEEEecCCCCChhhHHH-----HHHHHH
Q 015092 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-----KLEWYE 252 (413)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilV~NK~Dl~~~~~~~~-----~~~~~~ 252 (413)
+...+...+..+|++++|+|+..+...++..++.++.. .+.| +|+|+||+|+.+.++..+ ....+.
T Consensus 88 ------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~--~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~ 159 (394)
T PRK12736 88 ------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ--VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLS 159 (394)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 33445566779999999999999888887777777766 5788 678999999975433222 112222
Q ss_pred hcC---CCccEEEcccCCCC--------CHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCc
Q 015092 253 KFT---DVDEVIPVSAKYGH--------GVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPY 321 (413)
Q Consensus 253 ~~~---~~~~v~~iSA~~g~--------gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipy 321 (413)
... ...+++++||++|. ++..|++.|.+.++.+... .+.|.++.+.+++ ..+.+|.
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~~------~~~p~r~~I~~~~-------~~~g~G~ 226 (394)
T PRK12736 160 EYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPERD------TDKPFLMPVEDVF-------TITGRGT 226 (394)
T ss_pred HhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCCC------CCCCeEEEEEEEE-------ecCCcEE
Confidence 211 23589999999983 6899999999988743211 1223332222211 0245666
Q ss_pred eeEEEEEEEEecCCCeeEE
Q 015092 322 ACQVNVVSYKTRPTAKDFI 340 (413)
Q Consensus 322 s~~v~v~~~~~~~~~~~~i 340 (413)
.+...+..|..+.|..+++
T Consensus 227 Vv~G~v~~G~l~~gd~v~i 245 (394)
T PRK12736 227 VVTGRVERGTVKVGDEVEI 245 (394)
T ss_pred EEEEEEeecEEecCCEEEE
Confidence 6677788888776655443
No 162
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.79 E-value=2.5e-18 Score=152.75 Aligned_cols=151 Identities=23% Similarity=0.276 Sum_probs=101.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
.|+++|.+|||||||+++|.+.......++.+.+ ...+..++..+.+|||||. ..+. ..+..++..|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~~~i~D~~G~--~~~~-------~~~~~~~~~a 67 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT----PTKLRLDKYEVCIFDLGGG--ANFR-------GIWVNYYAEA 67 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccce----EEEEEECCEEEEEEECCCc--HHHH-------HHHHHHHcCC
Confidence 3799999999999999999986322222333332 2234456789999999994 2222 2355678999
Q ss_pred cEEEEEeeCCCCC--chHHHHHHHHccccC-CCCCEEEEEecCCCCChhhHHHHHHHHH--h----cCCCccEEEcccCC
Q 015092 197 DCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYE--K----FTDVDEVIPVSAKY 267 (413)
Q Consensus 197 D~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~----~~~~~~v~~iSA~~ 267 (413)
|++|+|+|+++.. .....++..+++... .++|+++|+||+|+.......+..+.+. . ......++++||++
T Consensus 68 ~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~ 147 (167)
T cd04161 68 HGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIE 147 (167)
T ss_pred CEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEcee
Confidence 9999999998753 223344444443311 4789999999999976443332222211 1 11224688899999
Q ss_pred C------CCHHHHHHHHHh
Q 015092 268 G------HGVEDIRDWILT 280 (413)
Q Consensus 268 g------~gv~~L~~~l~~ 280 (413)
| .|+.+.++||..
T Consensus 148 g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 148 GLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCCccccCHHHHHHHHhc
Confidence 8 899999999964
No 163
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.79 E-value=3.6e-18 Score=151.85 Aligned_cols=154 Identities=21% Similarity=0.327 Sum_probs=102.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+..+|+++|++|||||||+++|.+.......++.+.+. ..+...+..+.+|||||.. .+ ...+...+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~----~~i~~~~~~~~~~D~~G~~--~~-------~~~~~~~~ 79 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNI----KTVQSDGFKLNVWDIGGQR--AI-------RPYWRNYF 79 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcce----EEEEECCEEEEEEECCCCH--HH-------HHHHHHHh
Confidence 45689999999999999999999976543333333222 2334457889999999952 21 12244457
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHhc---CCCccEEEcccCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~ 267 (413)
..+|++++|+|++... .....++...++.. ..+.|+++++||+|+..........+.+... ....+++++||++
T Consensus 80 ~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04155 80 ENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKT 159 (173)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCC
Confidence 8999999999998642 22223333333221 1468999999999997644333333333211 1123578999999
Q ss_pred CCCHHHHHHHHHh
Q 015092 268 GHGVEDIRDWILT 280 (413)
Q Consensus 268 g~gv~~L~~~l~~ 280 (413)
|.|+++++++|++
T Consensus 160 ~~gi~~~~~~l~~ 172 (173)
T cd04155 160 GEGLQEGMNWVCK 172 (173)
T ss_pred CCCHHHHHHHHhc
Confidence 9999999999975
No 164
>COG2262 HflX GTPases [General function prediction only]
Probab=99.79 E-value=1.6e-18 Score=168.62 Aligned_cols=164 Identities=29% Similarity=0.323 Sum_probs=122.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC-CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
-+.|+++|++|+|||||+|+|++.... +.+...+|-++....+... +.++.+-||-|+.+.-++.+-..|. .+....
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~-~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFk-sTLEE~ 269 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVY-VADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFK-STLEEV 269 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCee-ccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHH-HHHHHh
Confidence 358999999999999999999987765 5677788877766666554 6899999999998876776666553 344556
Q ss_pred ccccEEEEEeeCCCCC-chHHHHHHHHccccC-CCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCH
Q 015092 194 INADCIVVLVDACKAP-ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~-~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv 271 (413)
..||++|+|||++++. ........+.+.... ..+|+|+|+||+|+....... ..+.... ...+++||++|.|+
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~---~~~~~~~--~~~v~iSA~~~~gl 344 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEIL---AELERGS--PNPVFISAKTGEGL 344 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhh---hhhhhcC--CCeEEEEeccCcCH
Confidence 7999999999999874 222222333333322 569999999999988655422 2222222 15899999999999
Q ss_pred HHHHHHHHhhCCCC
Q 015092 272 EDIRDWILTKLPLG 285 (413)
Q Consensus 272 ~~L~~~l~~~l~~~ 285 (413)
+.|++.|...++..
T Consensus 345 ~~L~~~i~~~l~~~ 358 (411)
T COG2262 345 DLLRERIIELLSGL 358 (411)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999988743
No 165
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.79 E-value=2e-18 Score=153.97 Aligned_cols=152 Identities=18% Similarity=0.192 Sum_probs=101.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+++|.+|+|||||++++.+..+. ..+.+|..+.....+..+ ...+.+|||||. ..+..+ ...++.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~ 70 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYP--TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQ--DEFDKL-------RPLCYP 70 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEECCCC--hhhccc-------cccccC
Confidence 7999999999999999999887653 445555544333333333 357889999995 333332 233578
Q ss_pred cccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhh------------HH-HHHHHHHhcCCCcc
Q 015092 195 NADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------IA-KKLEWYEKFTDVDE 259 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~------------~~-~~~~~~~~~~~~~~ 259 (413)
.+|++|+|+|++++.. .....+...++....+.|+++|+||+|+..... +. .....+....+..+
T Consensus 71 ~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~ 150 (173)
T cd04130 71 DTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACE 150 (173)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCe
Confidence 9999999999987642 332223333333225799999999999864321 11 11222333334558
Q ss_pred EEEcccCCCCCHHHHHHHHH
Q 015092 260 VIPVSAKYGHGVEDIRDWIL 279 (413)
Q Consensus 260 v~~iSA~~g~gv~~L~~~l~ 279 (413)
++++||++|.|++++++.+.
T Consensus 151 ~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 151 YIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred EEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999998875
No 166
>CHL00071 tufA elongation factor Tu
Probab=99.79 E-value=1.4e-18 Score=175.74 Aligned_cols=159 Identities=18% Similarity=0.186 Sum_probs=115.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceee---------------eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~---------------vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 178 (413)
...+|+++|++|+|||||+|+|++..... .....+.|.+.....+..++.++.|+||||+.
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~---- 86 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA---- 86 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH----
Confidence 34589999999999999999998753211 11235667766555666778899999999952
Q ss_pred hhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCC-EEEEEecCCCCChhhHHH-----HHHHHH
Q 015092 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-----KLEWYE 252 (413)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilV~NK~Dl~~~~~~~~-----~~~~~~ 252 (413)
.+...+..++..+|++++|+|+..+...++..++..+.. .+.| +|+|+||+|+.+.....+ ....+.
T Consensus 87 -----~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~--~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~ 159 (409)
T CHL00071 87 -----DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQ--VGVPNIVVFLNKEDQVDDEELLELVELEVRELLS 159 (409)
T ss_pred -----HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHH
Confidence 244556667889999999999999888888877777766 6788 678999999986443221 122222
Q ss_pred hcC---CCccEEEcccCCCC------------------CHHHHHHHHHhhCC
Q 015092 253 KFT---DVDEVIPVSAKYGH------------------GVEDIRDWILTKLP 283 (413)
Q Consensus 253 ~~~---~~~~v~~iSA~~g~------------------gv~~L~~~l~~~l~ 283 (413)
... ...+++++||.+|. ++..|++.|.+.++
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~ 211 (409)
T CHL00071 160 KYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIP 211 (409)
T ss_pred HhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCC
Confidence 211 13689999999986 35778888877664
No 167
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=2.8e-18 Score=160.16 Aligned_cols=156 Identities=15% Similarity=0.084 Sum_probs=103.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
..+|+++|.+|||||||++++++..+. ..+.+|........ +......+.||||+| ++.+..+ ...+
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~--~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG--~e~~~~~-------~~~~ 81 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTAGLETEEQRVELSLWDTSG--SPYYDNV-------RPLC 81 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCC--CCcCCceeeeeEEEEEECCEEEEEEEEeCCC--chhhHHH-------HHHH
Confidence 348999999999999999999987764 23333322222212 233346789999999 4444433 3345
Q ss_pred cccccEEEEEeeCCCCCchH---HHHHHHHccccCCCCCEEEEEecCCCCCh------------hhH-HHHHHHHHhcCC
Q 015092 193 GINADCIVVLVDACKAPERI---DEILEEGVGDHKDKLPILLVLNKKDLIKP------------GEI-AKKLEWYEKFTD 256 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~~~---~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~------------~~~-~~~~~~~~~~~~ 256 (413)
+..||++|+|+|+++...-. ..|+.. ++....+.|++||+||+|+... ..+ .+....+....+
T Consensus 82 ~~~ad~vIlVyDit~~~Sf~~~~~~w~~~-i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~ 160 (232)
T cd04174 82 YSDSDAVLLCFDISRPETVDSALKKWKAE-IMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLG 160 (232)
T ss_pred cCCCcEEEEEEECCChHHHHHHHHHHHHH-HHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcC
Confidence 89999999999998764322 233333 3322257899999999998531 111 122333444344
Q ss_pred CccEEEcccCCCC-CHHHHHHHHHhhC
Q 015092 257 VDEVIPVSAKYGH-GVEDIRDWILTKL 282 (413)
Q Consensus 257 ~~~v~~iSA~~g~-gv~~L~~~l~~~l 282 (413)
...+++|||++|. ||+++|..++..+
T Consensus 161 ~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 161 AEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred CCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 4468999999998 8999999988765
No 168
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.79 E-value=2.7e-18 Score=152.27 Aligned_cols=155 Identities=17% Similarity=0.210 Sum_probs=101.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+++|.+|||||||++++.+..+. .....++.......+. .....+.+|||||. ..+..+ ....+.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~ 71 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGT--EQFTAM-------RELYIK 71 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEeCCCc--ccchhh-------hHHHHh
Confidence 7999999999999999999977753 2333344333222223 33357889999994 334333 333467
Q ss_pred cccEEEEEeeCCCCC--chHHHHHHHHccc-cCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCCC
Q 015092 195 NADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~--~~~~~~l~~~l~~-~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
.+|++++|+|.+++. .....+.....+. ...+.|+++|+||+|+....... .....+....+..+++++||++|.|
T Consensus 72 ~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~ 151 (168)
T cd04177 72 SGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTN 151 (168)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCC
Confidence 899999999988653 2222222222211 12579999999999996543221 1112222223345799999999999
Q ss_pred HHHHHHHHHhhC
Q 015092 271 VEDIRDWILTKL 282 (413)
Q Consensus 271 v~~L~~~l~~~l 282 (413)
++++++++...+
T Consensus 152 i~~~f~~i~~~~ 163 (168)
T cd04177 152 VDEVFIDLVRQI 163 (168)
T ss_pred HHHHHHHHHHHH
Confidence 999999998755
No 169
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.79 E-value=4.3e-18 Score=162.43 Aligned_cols=114 Identities=22% Similarity=0.228 Sum_probs=82.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeee---------------eCCC------CceEEEEEEEEeCCCeeEEEEeCCCCc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV---------------TNKP------QTTRHRILGICSGPEYQMILYDTPGII 174 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~v---------------s~~~------~tt~~~~~~~~~~~~~~~~l~DtpG~~ 174 (413)
.+|+|+||+|+|||||+++|+.....+. ++.. +.+.......+.+++.++++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 4799999999999999999985432211 1111 112222333567888999999999963
Q ss_pred hhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCC
Q 015092 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (413)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~ 240 (413)
+ +...+..+++.+|++|+|+|++.+.......+++.... .++|+++++||+|+..
T Consensus 83 d---------f~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~--~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 D---------FSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL--RGIPIITFINKLDREG 137 (267)
T ss_pred H---------HHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHh--cCCCEEEEEECCccCC
Confidence 2 22335556789999999999998877766667766655 6899999999999854
No 170
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.79 E-value=2.9e-18 Score=180.65 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=114.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceee--eeCCCCceEEEEEEEEeC-CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~--vs~~~~tt~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.|+++|++++|||||+++|+|..... .....+.|.+.....+.. ++..+.||||||+ +. +...+...+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh--e~-------fi~~m~~g~ 72 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH--EK-------FLSNMLAGV 72 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH--HH-------HHHHHHHHh
Confidence 58999999999999999999854221 223356676655444433 4567899999995 22 345566668
Q ss_pred ccccEEEEEeeCCCCCchHHHHHHHHccccCCCCC-EEEEEecCCCCChhhHHHHHHHHH----hcC-CCccEEEcccCC
Q 015092 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKKLEWYE----KFT-DVDEVIPVSAKY 267 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilV~NK~Dl~~~~~~~~~~~~~~----~~~-~~~~v~~iSA~~ 267 (413)
..+|++++|||++.+...++...+..++. .+.| +++|+||+|+.+..........+. ... ...++|++||++
T Consensus 73 ~~~D~~lLVVda~eg~~~qT~ehl~il~~--lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~t 150 (614)
T PRK10512 73 GGIDHALLVVACDDGVMAQTREHLAILQL--TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATE 150 (614)
T ss_pred hcCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCC
Confidence 89999999999999888877777776665 4566 579999999986544433332222 211 236899999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 015092 268 GHGVEDIRDWILTKLPL 284 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~~ 284 (413)
|.|+++|+++|.....+
T Consensus 151 G~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 151 GRGIDALREHLLQLPER 167 (614)
T ss_pred CCCCHHHHHHHHHhhcc
Confidence 99999999999876543
No 171
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.79 E-value=5.2e-18 Score=178.11 Aligned_cols=157 Identities=21% Similarity=0.289 Sum_probs=116.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceee--eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~--vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
.|+++|++|+|||||+++|++..... .....+.|.+.....+..++..+.+|||||+ .. +...+...+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh--e~-------f~~~~~~g~~ 72 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH--EK-------FISNAIAGGG 72 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH--HH-------HHHHHHhhhc
Confidence 68999999999999999999854211 1234567777666667777789999999994 22 3445566678
Q ss_pred cccEEEEEeeCCCCCchHHHHHHHHccccCCCCC-EEEEEecCCCCChhhHHHHH----HHHHhcC--CCccEEEcccCC
Q 015092 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKKL----EWYEKFT--DVDEVIPVSAKY 267 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilV~NK~Dl~~~~~~~~~~----~~~~~~~--~~~~v~~iSA~~ 267 (413)
.+|++++|+|++++...++...+..++. .+.| +++|+||+|+.+...+.... ..+.... ...+++++||++
T Consensus 73 ~aD~aILVVDa~~G~~~qT~ehl~il~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~t 150 (581)
T TIGR00475 73 GIDAALLVVDADEGVMTQTGEHLAVLDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKT 150 (581)
T ss_pred cCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCC
Confidence 9999999999998876666655555555 5677 99999999998755432222 2222211 136899999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 015092 268 GHGVEDIRDWILTKLPL 284 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~~ 284 (413)
|.|+++++..|...+..
T Consensus 151 G~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 151 GQGIGELKKELKNLLES 167 (581)
T ss_pred CCCchhHHHHHHHHHHh
Confidence 99999999999877654
No 172
>PLN03110 Rab GTPase; Provisional
Probab=99.79 E-value=2.2e-18 Score=159.71 Aligned_cols=157 Identities=17% Similarity=0.177 Sum_probs=104.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.+|+++|++|||||||+++|++..+.. ...+....+.....+. .....+.+|||||. ..+.. ....++
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~-~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~--~~~~~-------~~~~~~ 82 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ--ERYRA-------ITSAYY 82 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCCc--HHHHH-------HHHHHh
Confidence 489999999999999999999887642 2222222222222233 33458899999994 33322 234457
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
+.+|++|+|+|+++.. .....|+..+......+.|+++|+||+|+.....+. +....+....+ .+++++||++|.|
T Consensus 83 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~-~~~~e~SA~~g~~ 161 (216)
T PLN03110 83 RGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEG-LSFLETSALEATN 161 (216)
T ss_pred CCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCC
Confidence 8999999999997653 223334333322222579999999999986433221 22233333333 5899999999999
Q ss_pred HHHHHHHHHhhCC
Q 015092 271 VEDIRDWILTKLP 283 (413)
Q Consensus 271 v~~L~~~l~~~l~ 283 (413)
+++++++|...+.
T Consensus 162 v~~lf~~l~~~i~ 174 (216)
T PLN03110 162 VEKAFQTILLEIY 174 (216)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987764
No 173
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.79 E-value=3.9e-18 Score=161.04 Aligned_cols=155 Identities=19% Similarity=0.232 Sum_probs=102.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+++|.+|||||||++++++..+. ..+.+|+.+.....+..+ ...+.||||+|. ..+..+ ...++.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~--~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~--~~~~~~-------~~~~~~ 70 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE--EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGN--HPFPAM-------RRLSIL 70 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC--CCCCCChhHhEEEEEEECCEEEEEEEEECCCC--hhhhHH-------HHHHhc
Confidence 6999999999999999999987764 233444433333333333 367889999994 333322 222467
Q ss_pred cccEEEEEeeCCCCC--chHHHHHHHHccc---------cCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCccEE
Q 015092 195 NADCIVVLVDACKAP--ERIDEILEEGVGD---------HKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVI 261 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~--~~~~~~l~~~l~~---------~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~v~ 261 (413)
.+|++|+|+|+++.. +....++.++... ...+.|+|+|+||+|+..... ..+..+.+... ...+++
T Consensus 71 ~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~-~~~~~~ 149 (247)
T cd04143 71 TGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD-ENCAYF 149 (247)
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc-CCCEEE
Confidence 899999999998753 2223332222211 114789999999999964221 22222222221 234789
Q ss_pred EcccCCCCCHHHHHHHHHhhCC
Q 015092 262 PVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 262 ~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
++||++|.|+++++++|...+.
T Consensus 150 evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 150 EVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred EEeCCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999998763
No 174
>PLN03127 Elongation factor Tu; Provisional
Probab=99.78 E-value=3.2e-18 Score=174.24 Aligned_cols=201 Identities=16% Similarity=0.138 Sum_probs=132.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC------ceeee---------eCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLSIV---------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~------~~~~v---------s~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 178 (413)
...+|+++||+|+|||||+++|.+. ..... ....+.|.+.....+..++.++.|+||||+.+
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~--- 136 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD--- 136 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc---
Confidence 3458999999999999999999732 21111 12367888877777878888999999999632
Q ss_pred hhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCC-EEEEEecCCCCChhhHHHHHH-HHH---h
Q 015092 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKKLE-WYE---K 253 (413)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilV~NK~Dl~~~~~~~~~~~-~~~---~ 253 (413)
+...+...+..+|++++|+|+..+...++..++.++.. .+.| +|+|+||+|+.+.....+... .+. .
T Consensus 137 ------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~--~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~ 208 (447)
T PLN03127 137 ------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ--VGVPSLVVFLNKVDVVDDEELLELVEMELRELLS 208 (447)
T ss_pred ------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 33444455678999999999999888888888777776 6788 478899999986433322211 221 1
Q ss_pred cC----CCccEEEcccC---CCCC-------HHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCC
Q 015092 254 FT----DVDEVIPVSAK---YGHG-------VEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEV 319 (413)
Q Consensus 254 ~~----~~~~v~~iSA~---~g~g-------v~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~ei 319 (413)
.. ...+++++||. +|.| +..|+++|.+.++.+... .+.|.++.+.++++ -+.+
T Consensus 209 ~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~------~~~pfr~~I~~vf~-------v~g~ 275 (447)
T PLN03127 209 FYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRV------LDKPFLMPIEDVFS-------IQGR 275 (447)
T ss_pred HhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcc------cccceEeeEEEEEE-------cCCc
Confidence 11 23578888886 4555 789999999888643211 12233322222210 2345
Q ss_pred CceeEEEEEEEEecCCCee
Q 015092 320 PYACQVNVVSYKTRPTAKD 338 (413)
Q Consensus 320 pys~~v~v~~~~~~~~~~~ 338 (413)
|....-.+..|..+.|..+
T Consensus 276 GtVvtG~v~~G~i~~Gd~v 294 (447)
T PLN03127 276 GTVATGRVEQGTIKVGEEV 294 (447)
T ss_pred eEEEEEEEEccEEecCCEE
Confidence 5555667777776665444
No 175
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=4.9e-18 Score=168.87 Aligned_cols=196 Identities=18% Similarity=0.158 Sum_probs=144.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEe-CCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015092 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
..|+|.|-|+||.+.|||||+++|.+..++. ....|.|.+..-..++ ..|..++|+|||| +..|..++.++
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA-~E~GGITQhIGAF~V~~p~G~~iTFLDTPG--HaAF~aMRaRG----- 221 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAA-GEAGGITQHIGAFTVTLPSGKSITFLDTPG--HAAFSAMRARG----- 221 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceeh-hhcCCccceeceEEEecCCCCEEEEecCCc--HHHHHHHHhcc-----
Confidence 3488999999999999999999999998874 4566677665444333 2678999999999 56777776655
Q ss_pred hhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHH-------HHhcCCCccEEEc
Q 015092 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW-------YEKFTDVDEVIPV 263 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~-------~~~~~~~~~v~~i 263 (413)
...+|++++||.+.++..+++.+.....+. .+.|+|+++||||.+.... ...... .+.+++-.+++++
T Consensus 222 --A~vtDIvVLVVAadDGVmpQT~EaIkhAk~--A~VpiVvAinKiDkp~a~p-ekv~~eL~~~gi~~E~~GGdVQvipi 296 (683)
T KOG1145|consen 222 --ANVTDIVVLVVAADDGVMPQTLEAIKHAKS--ANVPIVVAINKIDKPGANP-EKVKRELLSQGIVVEDLGGDVQVIPI 296 (683)
T ss_pred --CccccEEEEEEEccCCccHhHHHHHHHHHh--cCCCEEEEEeccCCCCCCH-HHHHHHHHHcCccHHHcCCceeEEEe
Confidence 678999999999999999999888888877 8999999999999875432 222222 2345677899999
Q ss_pred ccCCCCCHHHHHHHHHhhCC-----CCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCC
Q 015092 264 SAKYGHGVEDIRDWILTKLP-----LGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTA 336 (413)
Q Consensus 264 SA~~g~gv~~L~~~l~~~l~-----~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~~v~v~~~~~~~~~ 336 (413)
||++|.|++.|.+.+.-.+. ..|...-+..+.+ ..+.+.+|..+.+.|-.|+.+.|.
T Consensus 297 SAl~g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIE----------------S~vdkg~G~~aT~iVkrGTLkKG~ 358 (683)
T KOG1145|consen 297 SALTGENLDLLEEAILLLAEVMDLKADPKGPAEGWVIE----------------SSVDKGRGPVATVIVKRGTLKKGS 358 (683)
T ss_pred ecccCCChHHHHHHHHHHHHHhhcccCCCCCceEEEEE----------------eeecCCccceeEEEEecccccccc
Confidence 99999999999998775431 1111111111000 123667788888888888877653
No 176
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.78 E-value=4.7e-18 Score=147.55 Aligned_cols=151 Identities=20% Similarity=0.287 Sum_probs=100.2
Q ss_pred EEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccc
Q 015092 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (413)
Q Consensus 118 v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD 197 (413)
|+++|++|||||||+|+|.+..+.. ....++..... .+..++..+.+|||||. ..+. ..+..++..+|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~-~~~~~~~~~~~~D~~g~--~~~~-------~~~~~~~~~~d 69 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE--DTIPTVGFNMR-KVTKGNVTLKVWDLGGQ--PRFR-------SMWERYCRGVN 69 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc--CccCCCCcceE-EEEECCEEEEEEECCCC--HhHH-------HHHHHHHhcCC
Confidence 7999999999999999999987642 22222222222 23445688999999995 2222 23445578999
Q ss_pred EEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCccEEEcccCCCCCH
Q 015092 198 CIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHGV 271 (413)
Q Consensus 198 ~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~iSA~~g~gv 271 (413)
++++|+|++... .....++...+... ..++|+++|+||+|+............+.. .....+++++||++|.|+
T Consensus 70 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 149 (159)
T cd04159 70 AIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNI 149 (159)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCCh
Confidence 999999997643 22223344433321 147899999999998765433333222211 112247899999999999
Q ss_pred HHHHHHHHh
Q 015092 272 EDIRDWILT 280 (413)
Q Consensus 272 ~~L~~~l~~ 280 (413)
++++++|.+
T Consensus 150 ~~l~~~l~~ 158 (159)
T cd04159 150 DIVLDWLIK 158 (159)
T ss_pred HHHHHHHhh
Confidence 999999875
No 177
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.78 E-value=2.3e-18 Score=143.54 Aligned_cols=116 Identities=38% Similarity=0.522 Sum_probs=91.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
+|+++|.+|+|||||+|+|++.+...++..+++|+......+...+..+.++||||+...............+...+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 58999999999999999999987878999999999987777778889999999999865332222112344456666899
Q ss_pred cEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEec
Q 015092 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235 (413)
Q Consensus 197 D~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK 235 (413)
|+++||+|+.++.......+.+.++ .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~~~~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPITEDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSHHHHHHHHHHHH---TTSEEEEEEES
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHh---cCCCEEEEEcC
Confidence 9999999987754445555555553 58999999998
No 178
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.78 E-value=5.6e-18 Score=150.65 Aligned_cols=158 Identities=21% Similarity=0.227 Sum_probs=101.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
..+|+++|++|||||||++++++..+... ..+....+.....+. .....+.+|||||. ..+.. .....+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~------~~~~~~ 72 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPER-TEATIGVDFRERTVEIDGERIKVQLWDTAGQ--ERFRK------SMVQHY 72 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCc-cccceeEEEEEEEEEECCeEEEEEEEeCCCh--HHHHH------hhHHHh
Confidence 35899999999999999999988765321 111111222222233 33468899999994 22210 113445
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHccc-cCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCC-
Q 015092 193 GINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY- 267 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~-~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~- 267 (413)
++.+|++++|+|++++. .....++...... ...+.|+++|+||+|+.....+. .....+..... .+++++||++
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~ 151 (170)
T cd04115 73 YRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHS-MPLFETSAKDP 151 (170)
T ss_pred hcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcC-CcEEEEeccCC
Confidence 78999999999998754 2233333222221 11569999999999986543321 22223333332 5799999999
Q ss_pred --CCCHHHHHHHHHhhC
Q 015092 268 --GHGVEDIRDWILTKL 282 (413)
Q Consensus 268 --g~gv~~L~~~l~~~l 282 (413)
+.|+++++..++..+
T Consensus 152 ~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 152 SENDHVEAIFMTLAHKL 168 (170)
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 899999999988765
No 179
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.78 E-value=3.8e-18 Score=156.09 Aligned_cols=164 Identities=20% Similarity=0.276 Sum_probs=104.1
Q ss_pred EcCCCCCHHHHHHHHhCCceee-eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEE
Q 015092 121 LGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 199 (413)
Q Consensus 121 vG~~~~GKSsLln~L~~~~~~~-vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~v 199 (413)
+|.+|||||||+++++...+.. ..++.+.+.......+......+.+|||||. ..+..+ ...+++.+|++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~--e~~~~l-------~~~~~~~ad~~ 71 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQ--EKFGGL-------RDGYYIQGQCA 71 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCc--hhhhhh-------hHHHhcCCCEE
Confidence 6999999999999999766531 1112222222222223334578999999994 444333 34458899999
Q ss_pred EEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHHHH
Q 015092 200 VVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDW 277 (413)
Q Consensus 200 l~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~~ 277 (413)
|+|+|+++... ....|+..+. ....+.|+++|+||+|+........... +....+ .++++|||++|.||.++|.+
T Consensus 72 ilV~D~t~~~S~~~i~~w~~~i~-~~~~~~piilvgNK~Dl~~~~v~~~~~~-~~~~~~-~~~~e~SAk~~~~v~~~F~~ 148 (200)
T smart00176 72 IIMFDVTARVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKDRKVKAKSIT-FHRKKN-LQYYDISAKSNYNFEKPFLW 148 (200)
T ss_pred EEEEECCChHHHHHHHHHHHHHH-HhCCCCCEEEEEECcccccccCCHHHHH-HHHHcC-CEEEEEeCCCCCCHHHHHHH
Confidence 99999987642 2333333332 2235799999999999854221112222 222222 47999999999999999999
Q ss_pred HHhhCC--------CCCCCCCCCccCC
Q 015092 278 ILTKLP--------LGPAYYPKDIVSE 296 (413)
Q Consensus 278 l~~~l~--------~~~~~~~~~~~t~ 296 (413)
|...+. ..++.++++..++
T Consensus 149 l~~~i~~~~~~~~~~~~~~~~~~~~~~ 175 (200)
T smart00176 149 LARKLIGDPNLEFVAMPALAPPEVVMD 175 (200)
T ss_pred HHHHHHhcccceeccCcccCCcccccC
Confidence 998653 2345555554443
No 180
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.78 E-value=4.1e-18 Score=159.58 Aligned_cols=156 Identities=31% Similarity=0.397 Sum_probs=113.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
+|+++|.||+|||||+|+|++.... +...+++|.....+.+.+++.++.+|||||+...... ...+..+....++.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~--~~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-VAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAAD--GKGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCccccceEEEEEECCeEEEEEECCCccccccc--chhHHHHHHHhhccC
Confidence 7999999999999999999998743 6778899988888888888899999999997542211 112334455678999
Q ss_pred cEEEEEeeCCCCCchHHHHHHHH--------------------------------------------cc-----------
Q 015092 197 DCIVVLVDACKAPERIDEILEEG--------------------------------------------VG----------- 221 (413)
Q Consensus 197 D~vl~VvD~~~~~~~~~~~l~~~--------------------------------------------l~----------- 221 (413)
|++++|+|+++..... ..+.+. ++
T Consensus 79 d~il~V~D~t~~~~~~-~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~ 157 (233)
T cd01896 79 DLILMVLDATKPEGHR-EILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLI 157 (233)
T ss_pred CEEEEEecCCcchhHH-HHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEE
Confidence 9999999987643211 111111 11
Q ss_pred --------------ccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHHHHHHhhCC
Q 015092 222 --------------DHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 222 --------------~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
......|+++|+||+|+....+... +.. ..+++++||++|.|+++|++.|.+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~----~~~---~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 158 REDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL----LAR---QPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred ccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHH----Hhc---CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 0012369999999999987654442 222 235899999999999999999988663
No 181
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=3.8e-18 Score=150.12 Aligned_cols=160 Identities=19% Similarity=0.180 Sum_probs=115.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeee-eCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~v-s~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
-.+|.++|.+|||||.|+-++.+..+... ..+.|.......-.+......+.+|||+| ++.++ ..+.+++
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAG--QERFr-------tit~syY 79 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAG--QERFR-------TITSSYY 79 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccc--cHHHh-------hhhHhhc
Confidence 35899999999999999999998877421 11222222222222445556899999999 55544 4467789
Q ss_pred ccccEEEEEeeCCCC--CchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCCC
Q 015092 194 INADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~--~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
++|++||+|+|+++. +.....|+.+.-+....+.|.++|+||+|+.....+. +..+.+....+...++++||+.+.|
T Consensus 80 R~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~N 159 (205)
T KOG0084|consen 80 RGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTN 159 (205)
T ss_pred cCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccC
Confidence 999999999999864 3566777777655555678999999999997654433 2233455545554499999999999
Q ss_pred HHHHHHHHHhhCC
Q 015092 271 VEDIRDWILTKLP 283 (413)
Q Consensus 271 v~~L~~~l~~~l~ 283 (413)
|++.|..|...+.
T Consensus 160 Ve~~F~~la~~lk 172 (205)
T KOG0084|consen 160 VEDAFLTLAKELK 172 (205)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887654
No 182
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.78 E-value=2.1e-18 Score=149.79 Aligned_cols=160 Identities=21% Similarity=0.232 Sum_probs=110.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeee-CCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs-~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
.+|.|+|.+|||||||+|+++.+++.... .+.|..--.....+...-..+.+|||+| ++.+..+...+ ++
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAG--QERFqsLg~aF-------YR 80 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAG--QERFQSLGVAF-------YR 80 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEeccc--HHHhhhcccce-------ec
Confidence 48999999999999999999988765211 1222211111222334446789999999 67777775444 89
Q ss_pred cccEEEEEeeCCCCC--chHHHHHHHHccccC----CCCCEEEEEecCCCCChh---h-HHHHHHHHHhcCCCccEEEcc
Q 015092 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK----DKLPILLVLNKKDLIKPG---E-IAKKLEWYEKFTDVDEVIPVS 264 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~----~~~p~ilV~NK~Dl~~~~---~-~~~~~~~~~~~~~~~~v~~iS 264 (413)
.||++++|+|...+. +....|-.+.+.... ...|+||++||+|+.... . ......|.... +..|+|++|
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~-gnipyfEtS 159 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSK-GNIPYFETS 159 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhc-CCceeEEec
Confidence 999999999987543 445555444444322 467999999999996521 1 12334455444 456999999
Q ss_pred cCCCCCHHHHHHHHHhhCCCC
Q 015092 265 AKYGHGVEDIRDWILTKLPLG 285 (413)
Q Consensus 265 A~~g~gv~~L~~~l~~~l~~~ 285 (413)
||.+.||++.|..+...+-..
T Consensus 160 AK~~~NV~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 160 AKEATNVDEAFEEIARRALAN 180 (210)
T ss_pred ccccccHHHHHHHHHHHHHhc
Confidence 999999999999998876543
No 183
>PRK13351 elongation factor G; Reviewed
Probab=99.78 E-value=1.3e-18 Score=186.99 Aligned_cols=211 Identities=22% Similarity=0.243 Sum_probs=138.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceee-----------eeC------CCCceEEEEEEEEeCCCeeEEEEeCCCCchhh
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~-----------vs~------~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~ 177 (413)
-.+|+|+|+.|+|||||+++|+.....+ ..+ ..+.|.......+.+.+.++++|||||+.+
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d-- 85 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID-- 85 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH--
Confidence 3589999999999999999997532110 111 123333333344667789999999999643
Q ss_pred hhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh---hHHHHHHHHH--
Q 015092 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG---EIAKKLEWYE-- 252 (413)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~---~~~~~~~~~~-- 252 (413)
+...+..++..+|++++|+|++.+.......++..+.. .+.|+++|+||+|+...+ .+......+.
T Consensus 86 -------f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~--~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~ 156 (687)
T PRK13351 86 -------FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADR--YGIPRLIFINKMDRVGADLFKVLEDIEERFGKR 156 (687)
T ss_pred -------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC
Confidence 23345667889999999999998887777777776666 689999999999987431 0111000000
Q ss_pred --------------------------------------------------------------------------------
Q 015092 253 -------------------------------------------------------------------------------- 252 (413)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (413)
T Consensus 157 ~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~ 236 (687)
T PRK13351 157 PLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSA 236 (687)
T ss_pred eEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCH
Confidence
Q ss_pred -----------hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCC---------ccCCchhhHHHHHHHHHHHH
Q 015092 253 -----------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD---------IVSEHPERFFVGEIIREKIF 312 (413)
Q Consensus 253 -----------~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~~---------~~t~~~~~~~~~eiiReki~ 312 (413)
....+.|+++.||++|.|++.|++.|...+|.+....+.. .....+...+++.++ |+
T Consensus 237 ~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~Vf--K~- 313 (687)
T PRK13351 237 EQLRAPLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVF--KV- 313 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEE--Ee-
Confidence 0112457899999999999999999999998753210000 000011222222222 11
Q ss_pred hhcCCCCCceeEEEEEEEEecCCCeeEE
Q 015092 313 MQYRNEVPYACQVNVVSYKTRPTAKDFI 340 (413)
Q Consensus 313 ~~~~~eipys~~v~v~~~~~~~~~~~~i 340 (413)
...+..|..+.++|.+|+.++|..+++
T Consensus 314 -~~d~~~G~i~~~RV~sGtl~~g~~v~~ 340 (687)
T PRK13351 314 -QYDPYAGKLTYLRVYSGTLRAGSQLYN 340 (687)
T ss_pred -eecCCCceEEEEEEeEEEEcCCCEEEe
Confidence 124567889999999999998766544
No 184
>PRK12735 elongation factor Tu; Reviewed
Probab=99.78 E-value=6e-18 Score=170.49 Aligned_cols=160 Identities=19% Similarity=0.175 Sum_probs=113.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC------ce-ee--------eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KL-SI--------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~------~~-~~--------vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 178 (413)
...+|+++|++|+|||||+++|++. .. .. .....+.|.+.....+..++.++.|+||||+.
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~---- 86 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA---- 86 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH----
Confidence 3458999999999999999999862 11 00 11245667666555566777899999999952
Q ss_pred hhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEE-EEEecCCCCChhhHH-----HHHHHHH
Q 015092 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGEIA-----KKLEWYE 252 (413)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~i-lV~NK~Dl~~~~~~~-----~~~~~~~ 252 (413)
.+...+...+..+|++++|+|+..+...++...+..+.. .+.|.+ +|+||+|+....+.. +....+.
T Consensus 87 -----~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~ 159 (396)
T PRK12735 87 -----DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred -----HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 244556677889999999999998877777666666665 578866 579999997533221 1112222
Q ss_pred hcC---CCccEEEcccCCCC----------CHHHHHHHHHhhCCC
Q 015092 253 KFT---DVDEVIPVSAKYGH----------GVEDIRDWILTKLPL 284 (413)
Q Consensus 253 ~~~---~~~~v~~iSA~~g~----------gv~~L~~~l~~~l~~ 284 (413)
... ...+++++||++|. ++..|++.|.+.++.
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~ 204 (396)
T PRK12735 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPE 204 (396)
T ss_pred HcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCC
Confidence 221 13689999999984 788999999988763
No 185
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.78 E-value=5.8e-18 Score=156.32 Aligned_cols=157 Identities=22% Similarity=0.292 Sum_probs=104.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEe---CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS---GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~---~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
.+|+++|.+|||||||+++|++..+..... +..+.+.....+. .....+.+|||||. ..+.. ....+
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~-~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~ 72 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSD-PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ--ERFRS-------ITRSY 72 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC-ceeceEEEEEEEEECCCCEEEEEEEeCCcc--hhHHH-------HHHHH
Confidence 489999999999999999999887653322 2222222222222 22367899999994 33322 23445
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHccccC-CCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccCCC
Q 015092 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
+..+|++|+|+|++++. .....++....+... ...|+++|+||+|+.....+ ......+.+..+ .+++++||++|
T Consensus 73 ~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sak~g 151 (211)
T cd04111 73 YRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLG-MKYIETSARTG 151 (211)
T ss_pred hcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhC-CEEEEEeCCCC
Confidence 78999999999998753 233344443332221 35778999999999753322 122233333333 58999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015092 269 HGVEDIRDWILTKLP 283 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~ 283 (413)
.|+++++++|.+.+.
T Consensus 152 ~~v~e~f~~l~~~~~ 166 (211)
T cd04111 152 DNVEEAFELLTQEIY 166 (211)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987654
No 186
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.78 E-value=1.8e-18 Score=152.75 Aligned_cols=154 Identities=19% Similarity=0.238 Sum_probs=97.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEE--EEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH--RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~--~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+++|.+|||||||+++++...+. ..++.++.. .....+......+.+|||||....... .....++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~ 70 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI--GEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTE--------QLERSIR 70 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc--cccCCChHHhceEEEEECCEEEEEEEEECCCCcccccc--------hHHHHHH
Confidence 4899999999999999999876553 333333322 222223333457889999995321111 1233467
Q ss_pred cccEEEEEeeCCCCCc--hHHHHHHHHcccc---CCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCC
Q 015092 195 NADCIVVLVDACKAPE--RIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~---~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
.+|++|+|+|++++.. ....++. .+... ..+.|+++|+||+|+.....+. .....+....+ .+++++||++|
T Consensus 71 ~~d~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~ 148 (165)
T cd04146 71 WADGFVLVYSITDRSSFDEISQLKQ-LIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELG-CLFFEVSAAED 148 (165)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHH-HHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcC-CEEEEeCCCCC
Confidence 8999999999987532 2222222 12211 2479999999999986432221 11122222223 47999999999
Q ss_pred C-CHHHHHHHHHhhC
Q 015092 269 H-GVEDIRDWILTKL 282 (413)
Q Consensus 269 ~-gv~~L~~~l~~~l 282 (413)
. |+++++..|++.+
T Consensus 149 ~~~v~~~f~~l~~~~ 163 (165)
T cd04146 149 YDGVHSVFHELCREV 163 (165)
T ss_pred chhHHHHHHHHHHHH
Confidence 5 9999999998765
No 187
>PRK00049 elongation factor Tu; Reviewed
Probab=99.77 E-value=8.2e-18 Score=169.41 Aligned_cols=203 Identities=16% Similarity=0.119 Sum_probs=135.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCcee------e---------eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS------I---------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~------~---------vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 178 (413)
...+|+++||+++|||||+++|++.... . .....+.|.+.....+..++.++.|+||||+.
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~---- 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA---- 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH----
Confidence 4458999999999999999999873110 0 01255777776666666778899999999952
Q ss_pred hhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEE-EEEecCCCCChhhHH-----HHHHHHH
Q 015092 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGEIA-----KKLEWYE 252 (413)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~i-lV~NK~Dl~~~~~~~-----~~~~~~~ 252 (413)
.+...+...+..+|++++|+|+..+...++..++.++.. .+.|.+ +++||+|+.+..... +....+.
T Consensus 87 -----~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~--~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~ 159 (396)
T PRK00049 87 -----DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred -----HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHH--cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHH
Confidence 245556677889999999999999888888777777766 678976 589999998533221 1112222
Q ss_pred hc---CCCccEEEcccCCCC----------CHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCC
Q 015092 253 KF---TDVDEVIPVSAKYGH----------GVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEV 319 (413)
Q Consensus 253 ~~---~~~~~v~~iSA~~g~----------gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~ei 319 (413)
.. ....+++++||++|. |+..|+++|.+.++.+.. ..+.|.++.+.+++ .-+.+
T Consensus 160 ~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~------~~~~p~r~~I~~~f-------~v~g~ 226 (396)
T PRK00049 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPER------AIDKPFLMPIEDVF-------SISGR 226 (396)
T ss_pred hcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCC------CCCCCeEEEEEEEE-------eeCCc
Confidence 21 123689999999875 678999999987763221 12233332222211 02345
Q ss_pred CceeEEEEEEEEecCCCeeEE
Q 015092 320 PYACQVNVVSYKTRPTAKDFI 340 (413)
Q Consensus 320 pys~~v~v~~~~~~~~~~~~i 340 (413)
|....-.+..|..+.|..+.+
T Consensus 227 G~Vv~G~v~~G~i~~gd~v~i 247 (396)
T PRK00049 227 GTVVTGRVERGIIKVGEEVEI 247 (396)
T ss_pred eEEEEEEEeeeEEecCCEEEE
Confidence 555666778887776654433
No 188
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.77 E-value=2.6e-17 Score=144.30 Aligned_cols=160 Identities=28% Similarity=0.367 Sum_probs=106.8
Q ss_pred EEEEcCCCCCHHHHHHHHhC-CceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh-hhHHHH---HHHHHHhh
Q 015092 118 VAVLGKPNVGKSTLANQMIG-QKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDSM---MMKNVRSA 192 (413)
Q Consensus 118 v~ivG~~~~GKSsLln~L~~-~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~l~~~---~~~~~~~~ 192 (413)
|+++|++|+|||||+|+|++ ......+.++++|....... .+ ..+.+|||||+..... ...... ........
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~--~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFN--VN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEE--cc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 79999999999999999994 34444566667766543322 22 2899999999753210 001111 11222233
Q ss_pred cccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHH----HHhcCCCccEEEcccCCC
Q 015092 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW----YEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~----~~~~~~~~~v~~iSA~~g 268 (413)
...++++++|+|...........+.+.+.. .+.|+++|+||+|+............ +.......+++++||+++
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~--~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~ 156 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEE--LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKG 156 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhHHHHHHHHHH--cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCC
Confidence 346789999999987665555555566655 56899999999999755433322222 221234468999999999
Q ss_pred CCHHHHHHHHHhhC
Q 015092 269 HGVEDIRDWILTKL 282 (413)
Q Consensus 269 ~gv~~L~~~l~~~l 282 (413)
.|+.+++++|.+++
T Consensus 157 ~~~~~l~~~l~~~~ 170 (170)
T cd01876 157 QGIDELRALIEKWL 170 (170)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999998753
No 189
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.77 E-value=5e-18 Score=150.37 Aligned_cols=149 Identities=16% Similarity=0.161 Sum_probs=100.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccc
Q 015092 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (413)
Q Consensus 118 v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD 197 (413)
|+++|.+|||||||+++|.+..+. ..+..|.... ...+...+..+.+|||||. ..+.. .+..+++.||
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~--~~~~pt~g~~-~~~i~~~~~~l~i~Dt~G~--~~~~~-------~~~~~~~~ad 69 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL--ESVVPTTGFN-SVAIPTQDAIMELLEIGGS--QNLRK-------YWKRYLSGSQ 69 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc--ccccccCCcc-eEEEeeCCeEEEEEECCCC--cchhH-------HHHHHHhhCC
Confidence 789999999999999999987653 2222222111 1234566789999999994 33322 2345588999
Q ss_pred EEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHH-----HHHHhcCCCccEEEcccCC---
Q 015092 198 CIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-----EWYEKFTDVDEVIPVSAKY--- 267 (413)
Q Consensus 198 ~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~-----~~~~~~~~~~~v~~iSA~~--- 267 (413)
++|+|+|+++.. .....++.+++... .++|+++|+||+|+.......... ..+.... ..+++++||++
T Consensus 70 ~ii~V~D~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~Sa~~~~s 147 (164)
T cd04162 70 GLIFVVDSADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGR-RWILQGTSLDDDGS 147 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCC-ceEEEEeeecCCCC
Confidence 999999998754 23334444444332 579999999999987544333222 1121111 24678888888
Q ss_pred ---CCCHHHHHHHHHh
Q 015092 268 ---GHGVEDIRDWILT 280 (413)
Q Consensus 268 ---g~gv~~L~~~l~~ 280 (413)
++||.++|+.+..
T Consensus 148 ~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 148 PSRMEAVKDLLSQLIN 163 (164)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999998864
No 190
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.77 E-value=1.2e-17 Score=149.69 Aligned_cols=156 Identities=26% Similarity=0.360 Sum_probs=110.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
.+..+|+++|..|+|||||+++|.......+.++.+ .....+...+..+.+||.+| +.....+ +..+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g----~~~~~i~~~~~~~~~~d~gG--~~~~~~~-------w~~y 78 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIG----FNIEEIKYKGYSLTIWDLGG--QESFRPL-------WKSY 78 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESS----EEEEEEEETTEEEEEEEESS--SGGGGGG-------GGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCcccc----cccceeeeCcEEEEEEeccc--ccccccc-------ceee
Confidence 356699999999999999999999876554333332 22333455789999999999 4333333 5566
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHccccC-CCCCEEEEEecCCCCChhhHHHHHHHHH--hc--CCCccEEEccc
Q 015092 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYE--KF--TDVDEVIPVSA 265 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~--~~~~~v~~iSA 265 (413)
+..+|++|||+|+++.. ......+.+++.... .++|+++++||+|+.......+....+. .. .....++.+||
T Consensus 79 ~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa 158 (175)
T PF00025_consen 79 FQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSA 158 (175)
T ss_dssp HTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBT
T ss_pred ccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeec
Confidence 88999999999998653 334444555544321 5799999999999876433333333322 11 13357899999
Q ss_pred CCCCCHHHHHHHHHhh
Q 015092 266 KYGHGVEDIRDWILTK 281 (413)
Q Consensus 266 ~~g~gv~~L~~~l~~~ 281 (413)
.+|.|+.+.++||.+.
T Consensus 159 ~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 159 KTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp TTTBTHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHhc
Confidence 9999999999999875
No 191
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.77 E-value=2.4e-18 Score=161.49 Aligned_cols=160 Identities=27% Similarity=0.297 Sum_probs=117.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCee-EEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQ-MILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~-~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
.|++||.||+|||||+|+|...+-. |.+++.||..+..+.+.++++. +.+-|.||+.+... ++.-+--...+.+..
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpk-Va~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh--~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPK-VAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAH--MNKGLGYKFLRHIER 274 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCc-ccccceeeeccccceeeccccceeEeccCcccccccc--ccCcccHHHHHHHHh
Confidence 6999999999999999999998874 8999999999999988887765 99999999976332 222233344555789
Q ss_pred ccEEEEEeeCCCCC----chHHHHHHHHcccc---CCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCC
Q 015092 196 ADCIVVLVDACKAP----ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 196 aD~vl~VvD~~~~~----~~~~~~l~~~l~~~---~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
|+.++||+|.+.+. ..+.+.++..+..+ ..++|.++|+||+|+...+. ..+..+........++++||+++
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~--~~l~~L~~~lq~~~V~pvsA~~~ 352 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK--NLLSSLAKRLQNPHVVPVSAKSG 352 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH--HHHHHHHHHcCCCcEEEeeeccc
Confidence 99999999998762 22222333322221 15789999999999963322 12233333333346999999999
Q ss_pred CCHHHHHHHHHhh
Q 015092 269 HGVEDIRDWILTK 281 (413)
Q Consensus 269 ~gv~~L~~~l~~~ 281 (413)
+|+.+|++.|...
T Consensus 353 egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 353 EGLEELLNGLREL 365 (366)
T ss_pred cchHHHHHHHhhc
Confidence 9999999988654
No 192
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.77 E-value=1.2e-17 Score=154.99 Aligned_cols=156 Identities=13% Similarity=0.124 Sum_probs=103.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.+|+++|.+|||||||++++.+..+. ..+..|........ +......+.+|||+| +..+..+ ...++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~--~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G--~e~~~~l-------~~~~~ 70 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP--GSYVPTVFENYTASFEIDKRRIELNMWDTSG--SSYYDNV-------RPLAY 70 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CccCCccccceEEEEEECCEEEEEEEEeCCC--cHHHHHH-------hHHhc
Confidence 37999999999999999999987764 23333332222222 233346788999999 4444433 23358
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhh------------H-HHHHHHHHhcCCCc
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------I-AKKLEWYEKFTDVD 258 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~------------~-~~~~~~~~~~~~~~ 258 (413)
..+|++|+|+|++++. ......+...++....+.|++||+||+|+..... + .+....+.+..+..
T Consensus 71 ~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~ 150 (222)
T cd04173 71 PDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAV 150 (222)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCC
Confidence 8999999999998763 2222223333333336799999999999964211 1 11222333334445
Q ss_pred cEEEcccCCCCC-HHHHHHHHHhhC
Q 015092 259 EVIPVSAKYGHG-VEDIRDWILTKL 282 (413)
Q Consensus 259 ~v~~iSA~~g~g-v~~L~~~l~~~l 282 (413)
+++++||+++.| |+++|.......
T Consensus 151 ~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 151 SYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred EEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 899999999985 999999887744
No 193
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.77 E-value=2e-17 Score=153.88 Aligned_cols=153 Identities=19% Similarity=0.225 Sum_probs=105.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeC-------------CCCceE------------------------EEEEEEEe
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTN-------------KPQTTR------------------------HRILGICS 159 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~-------------~~~tt~------------------------~~~~~~~~ 159 (413)
+|+++|++++|||||+++|....+..... ..|.|. .....++.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 48999999999999999998543311000 001110 00012334
Q ss_pred CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc--ccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCC
Q 015092 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG--INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (413)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~--~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~D 237 (413)
..+..+.++||||+.. +.+.+...+ ..+|++++|+|+..+....+..++..+.. .++|+++|+||+|
T Consensus 81 ~~~~~i~liDtpG~~~---------~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~--~~ip~ivvvNK~D 149 (224)
T cd04165 81 KSSKLVTFIDLAGHER---------YLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALA--LNIPVFVVVTKID 149 (224)
T ss_pred eCCcEEEEEECCCcHH---------HHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEECcc
Confidence 4567899999999532 222333334 37999999999999988888888887776 6899999999999
Q ss_pred CCChhhHHHHHHHHHhc----------------------------CCCccEEEcccCCCCCHHHHHHHHHh
Q 015092 238 LIKPGEIAKKLEWYEKF----------------------------TDVDEVIPVSAKYGHGVEDIRDWILT 280 (413)
Q Consensus 238 l~~~~~~~~~~~~~~~~----------------------------~~~~~v~~iSA~~g~gv~~L~~~l~~ 280 (413)
+.+...+......+... ....|+|++||.+|.|+++|..+|..
T Consensus 150 ~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 150 LAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 98765554444333221 12458999999999999999988754
No 194
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.77 E-value=4.9e-18 Score=154.91 Aligned_cols=174 Identities=14% Similarity=0.180 Sum_probs=121.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeee-CCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh--hhhHHHHHHHHHHhhc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMKNVRSAG 193 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs-~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~--~~~l~~~~~~~~~~~~ 193 (413)
+|+++|.||+|||||+|+|+|.+...+. ..+++|+........+.+.++.++||||+.+.. ...+...+.+.+..+.
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~ 81 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSA 81 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcC
Confidence 7999999999999999999998865433 245777777776667788999999999996532 2234455666666667
Q ss_pred ccccEEEEEeeCCCCCchHHHHHHHHcccc-C--CCCCEEEEEecCCCCChhhHHHH--------HHHHHhcCCCc----
Q 015092 194 INADCIVVLVDACKAPERIDEILEEGVGDH-K--DKLPILLVLNKKDLIKPGEIAKK--------LEWYEKFTDVD---- 258 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~-~--~~~p~ilV~NK~Dl~~~~~~~~~--------~~~~~~~~~~~---- 258 (413)
..+|++|||+|+.+ ....+..+++.++.. + .-.++++|+|++|......+... ...+....+..
T Consensus 82 ~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~ 160 (196)
T cd01852 82 PGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFN 160 (196)
T ss_pred CCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEe
Confidence 88999999999987 666565555555432 1 12689999999998754332221 12222222221
Q ss_pred cEEEcccCCCCCHHHHHHHHHhhCCC-CCCCCCCC
Q 015092 259 EVIPVSAKYGHGVEDIRDWILTKLPL-GPAYYPKD 292 (413)
Q Consensus 259 ~v~~iSA~~g~gv~~L~~~l~~~l~~-~~~~~~~~ 292 (413)
...+ |+..+.++.+|++.|.+.+++ ++|.|..+
T Consensus 161 ~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~ 194 (196)
T cd01852 161 NKAK-GEEQEQQVKELLAKVESMVKENGGKPYTND 194 (196)
T ss_pred CCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 2223 467889999999999999987 66777554
No 195
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.77 E-value=1.4e-17 Score=167.86 Aligned_cols=202 Identities=15% Similarity=0.118 Sum_probs=129.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC------ceee---------eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLSI---------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~------~~~~---------vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 178 (413)
+..+|+++|++++|||||+++|++. .... .....+.|.+.....+..++.++.||||||+. .
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~--~- 87 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA--D- 87 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH--H-
Confidence 4458999999999999999999743 1110 11235777776666666777889999999952 2
Q ss_pred hhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEE-EEEecCCCCChhhHHH-----HHHHHH
Q 015092 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGEIAK-----KLEWYE 252 (413)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~i-lV~NK~Dl~~~~~~~~-----~~~~~~ 252 (413)
+...+...+..+|++++|+|+..+...++...+..+.. .+.|.+ +|+||+|+.+.....+ ....+.
T Consensus 88 ------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~ 159 (394)
T TIGR00485 88 ------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 23444555678999999999999887777777776665 577765 6899999986433221 222222
Q ss_pred hcC---CCccEEEcccCCCC--------CHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCc
Q 015092 253 KFT---DVDEVIPVSAKYGH--------GVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPY 321 (413)
Q Consensus 253 ~~~---~~~~v~~iSA~~g~--------gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipy 321 (413)
... ...+++++||++|. ++..|++.|.+.++.+.. ..+.|.++.+.+++ ..+.+|-
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~------~~~~p~r~~V~~vf-------~~~g~G~ 226 (394)
T TIGR00485 160 EYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPER------ETDKPFLMPIEDVF-------SITGRGT 226 (394)
T ss_pred hcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCC------CCCCCeEEEEEEEE-------eeCCceE
Confidence 221 12689999999875 456777777766543211 11223222222111 0234555
Q ss_pred eeEEEEEEEEecCCCeeE
Q 015092 322 ACQVNVVSYKTRPTAKDF 339 (413)
Q Consensus 322 s~~v~v~~~~~~~~~~~~ 339 (413)
...-.+..|..+.|..+.
T Consensus 227 Vv~G~v~~G~l~~gd~v~ 244 (394)
T TIGR00485 227 VVTGRVERGIVKVGEEVE 244 (394)
T ss_pred EEEEEEEeeEEeCCCEEE
Confidence 566677788777665443
No 196
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.76 E-value=1.8e-17 Score=161.40 Aligned_cols=169 Identities=20% Similarity=0.249 Sum_probs=116.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeC------------------------CCeeEEEEeCCCC
Q 015092 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG------------------------PEYQMILYDTPGI 173 (413)
Q Consensus 118 v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~------------------------~~~~~~l~DtpG~ 173 (413)
|+|+|.||||||||+|+|++... .++++|++|.++..+.... ...++.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 58999999999999999999875 5789999998877765432 2357999999998
Q ss_pred chhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCC------------chHH------HHHH------------------
Q 015092 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP------------ERID------EILE------------------ 217 (413)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~------------~~~~------~~l~------------------ 217 (413)
..... ....+...+...++.||++++|+|+.... .+.. .++.
T Consensus 80 v~ga~--~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~ 157 (318)
T cd01899 80 VPGAH--EGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKA 157 (318)
T ss_pred CCCcc--chhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54221 11223345566789999999999997310 0000 0000
Q ss_pred --------------------------HHccc----------------------cCCCCCEEEEEecCCCCChhhHHHHHH
Q 015092 218 --------------------------EGVGD----------------------HKDKLPILLVLNKKDLIKPGEIAKKLE 249 (413)
Q Consensus 218 --------------------------~~l~~----------------------~~~~~p~ilV~NK~Dl~~~~~~~~~~~ 249 (413)
..+.. ....+|+|+|+||+|+........
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~--- 234 (318)
T cd01899 158 DAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNIS--- 234 (318)
T ss_pred hcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHH---
Confidence 00000 013579999999999865544332
Q ss_pred HHHhcCCCccEEEcccCCCCCHHHHHH-HHHhhCCCCCCCCCCC
Q 015092 250 WYEKFTDVDEVIPVSAKYGHGVEDIRD-WILTKLPLGPAYYPKD 292 (413)
Q Consensus 250 ~~~~~~~~~~v~~iSA~~g~gv~~L~~-~l~~~l~~~~~~~~~~ 292 (413)
.+.....+.+++++||+.+.|+.+|.+ .+.+++|++++.--..
T Consensus 235 ~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~~~ 278 (318)
T cd01899 235 KLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEITD 278 (318)
T ss_pred HHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCceecc
Confidence 222233456899999999999999998 6999999888654333
No 197
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.76 E-value=8.9e-18 Score=150.51 Aligned_cols=156 Identities=21% Similarity=0.279 Sum_probs=101.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.+|+++|.+|||||||++++++..+. ....+++........... +..+.+|||||.. .+..+ ....+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~--~~~~~-------~~~~~ 70 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV--ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQD--EYSIL-------PQKYS 70 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--cccCcchhhhEEEEEEECCEEEEEEEEECCChH--hhHHH-------HHHHH
Confidence 37999999999999999999987653 333334333222222332 3567899999952 33222 23346
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
..+|++++|+|+++.. .....++...++.. ..+.|+++|+||+|+.....+. .....+....+ .+++++||++|.
T Consensus 71 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (180)
T cd04137 71 IGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWG-AAFLESSARENE 149 (180)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 7899999999988753 22333333333321 1568999999999986432221 11122222222 478999999999
Q ss_pred CHHHHHHHHHhhCC
Q 015092 270 GVEDIRDWILTKLP 283 (413)
Q Consensus 270 gv~~L~~~l~~~l~ 283 (413)
|+.+++.+|.+.+.
T Consensus 150 gv~~l~~~l~~~~~ 163 (180)
T cd04137 150 NVEEAFELLIEEIE 163 (180)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987664
No 198
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.76 E-value=8.7e-18 Score=156.24 Aligned_cols=155 Identities=24% Similarity=0.274 Sum_probs=98.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcee-eeeCCCCc-eEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLS-IVTNKPQT-TRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~-~vs~~~~t-t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+++|.+|||||||++++++..+. .....++. ........+......+.+|||||.. ..+.. ..+.
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~----~~~~~-------~~~~ 70 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE----MWTED-------SCMQ 70 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc----hHHHh-------HHhh
Confidence 7999999999999999999876653 11111111 1111122233445779999999952 11111 1244
Q ss_pred -cccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCccEEEcccCCCC
Q 015092 195 -NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 195 -~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
.+|++++|+|+++.. .....++..+.+.. ..+.|+++|+||+|+.....+.. ....+....+ .+++++||++|.
T Consensus 71 ~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~SA~~~~ 149 (221)
T cd04148 71 YQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFD-CKFIETSAGLQH 149 (221)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcC-CeEEEecCCCCC
Confidence 899999999998753 22233333222211 14789999999999965433221 1122222223 478999999999
Q ss_pred CHHHHHHHHHhhCC
Q 015092 270 GVEDIRDWILTKLP 283 (413)
Q Consensus 270 gv~~L~~~l~~~l~ 283 (413)
|+++++++|.+.+.
T Consensus 150 gv~~l~~~l~~~~~ 163 (221)
T cd04148 150 NVDELLEGIVRQIR 163 (221)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998764
No 199
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.76 E-value=6.7e-18 Score=177.47 Aligned_cols=154 Identities=28% Similarity=0.322 Sum_probs=111.3
Q ss_pred cCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEE
Q 015092 122 GKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVV 201 (413)
Q Consensus 122 G~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~ 201 (413)
|.||||||||+|+|++.+. .+++.+++|.+...+.+..++.++.+|||||..+......++...+... ....+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l-~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYL-LNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHH-hhcCCCEEEE
Confidence 8999999999999999875 4789999999988888888888999999999744222222222222221 1357999999
Q ss_pred EeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHHHHHHhh
Q 015092 202 LVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (413)
Q Consensus 202 VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~ 281 (413)
|+|+++... ......+ +.. .+.|+++|+||+|+.+...+....+.+.+..+ .+++++||++|.|++++++.+.+.
T Consensus 79 VvDat~ler-~l~l~~q-l~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg-~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 79 VVDASNLER-NLYLTLQ-LLE--LGIPMILALNLVDEAEKKGIRIDEEKLEERLG-VPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred EecCCcchh-hHHHHHH-HHh--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHHH
Confidence 999987432 2222222 233 57999999999998654433322344444444 489999999999999999999876
Q ss_pred C
Q 015092 282 L 282 (413)
Q Consensus 282 l 282 (413)
.
T Consensus 154 ~ 154 (591)
T TIGR00437 154 I 154 (591)
T ss_pred h
Confidence 5
No 200
>PLN03108 Rab family protein; Provisional
Probab=99.76 E-value=1.2e-17 Score=154.09 Aligned_cols=157 Identities=20% Similarity=0.180 Sum_probs=102.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeC--CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.+|+|+|.+|+|||||+++|++..+.... .+....+.....+.. ....+.+|||||. ..+.. .....+
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~-~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~--~~~~~-------~~~~~~ 76 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMITIDNKPIKLQIWDTAGQ--ESFRS-------ITRSYY 76 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCccceEEEEEEEECCEEEEEEEEeCCCc--HHHHH-------HHHHHh
Confidence 58999999999999999999988765322 222222222222232 2356889999994 33222 234457
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
..+|++|+|+|+++.. .....++....+......|+++|+||+|+.....+. .....+....+ .+++++||++|.|
T Consensus 77 ~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~ 155 (210)
T PLN03108 77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQN 155 (210)
T ss_pred ccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCC
Confidence 7899999999998754 222234333332222578999999999997532221 11222222223 4799999999999
Q ss_pred HHHHHHHHHhhCC
Q 015092 271 VEDIRDWILTKLP 283 (413)
Q Consensus 271 v~~L~~~l~~~l~ 283 (413)
++++|.+++..+.
T Consensus 156 v~e~f~~l~~~~~ 168 (210)
T PLN03108 156 VEEAFIKTAAKIY 168 (210)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 201
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.76 E-value=7.9e-17 Score=168.93 Aligned_cols=156 Identities=24% Similarity=0.292 Sum_probs=104.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCC-ceEEEEEEEEeCC------------------CeeEEEEeCCC
Q 015092 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-TTRHRILGICSGP------------------EYQMILYDTPG 172 (413)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~-tt~~~~~~~~~~~------------------~~~~~l~DtpG 172 (413)
..|+|.|+++|++|+|||||+|+|.+..+. +..++ .|++.....+... -..+.||||||
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~--~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG 80 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVA--AKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPG 80 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccc--cCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCC
Confidence 358899999999999999999999887643 23332 2322211111100 01378999999
Q ss_pred CchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhh---------
Q 015092 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--------- 243 (413)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~--------- 243 (413)
+ ..+..+ ....+..+|++++|+|++++...++...+..++. .+.|+++|+||+|+.....
T Consensus 81 ~--e~f~~~-------~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e 149 (586)
T PRK04004 81 H--EAFTNL-------RKRGGALADIAILVVDINEGFQPQTIEAINILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLE 149 (586)
T ss_pred h--HHHHHH-------HHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcCCchhhhhhcCchHHH
Confidence 5 344333 2234678999999999998877777666666665 6899999999999852100
Q ss_pred --------HH--------HHHHHHH-------------hcCCCccEEEcccCCCCCHHHHHHHHHh
Q 015092 244 --------IA--------KKLEWYE-------------KFTDVDEVIPVSAKYGHGVEDIRDWILT 280 (413)
Q Consensus 244 --------~~--------~~~~~~~-------------~~~~~~~v~~iSA~~g~gv~~L~~~l~~ 280 (413)
+. +....+. .+.+..+++++||++|.|+++|++.+..
T Consensus 150 ~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 150 SIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 0111111 1223457999999999999999988764
No 202
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.76 E-value=1.8e-17 Score=158.58 Aligned_cols=113 Identities=25% Similarity=0.278 Sum_probs=81.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeee---eCCC--------------CceEEEEEEEEeCCCeeEEEEeCCCCchhhhh
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIV---TNKP--------------QTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~v---s~~~--------------~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 179 (413)
+|+|+|++|+|||||+|+|++....+. +... +.|.......+.+++.++++|||||+.+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~---- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD---- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHH----
Confidence 489999999999999999975432210 0011 2222233344667788999999999532
Q ss_pred hHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCC
Q 015092 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (413)
Q Consensus 180 ~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~ 240 (413)
+...+..++..+|++++|+|++.+.......+++.+.. .+.|.++|+||+|+..
T Consensus 77 -----f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~--~~~p~iivvNK~D~~~ 130 (268)
T cd04170 77 -----FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADE--AGIPRIIFINKMDRER 130 (268)
T ss_pred -----HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECCccCC
Confidence 23345666789999999999998877766666666665 6899999999999864
No 203
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.75 E-value=5e-18 Score=159.98 Aligned_cols=156 Identities=31% Similarity=0.406 Sum_probs=119.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
+|++||.|+||||||+|+|++.+.. +.+++.||...+.+++.+++.++.++|+||+........ ..-+++.+..+.|
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~se-va~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~--grG~~vlsv~R~A 141 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTKSE-VADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGR--GRGRQVLSVARNA 141 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCCCcc-ccccCceecccccceEeecCceEEEEcCcccccCcccCC--CCcceeeeeeccC
Confidence 8999999999999999999998865 789999999999999999999999999999976332211 1124466778999
Q ss_pred cEEEEEeeCCCCCchH---HH-----------------------------------------------------------
Q 015092 197 DCIVVLVDACKAPERI---DE----------------------------------------------------------- 214 (413)
Q Consensus 197 D~vl~VvD~~~~~~~~---~~----------------------------------------------------------- 214 (413)
|++++|+|+..+.... ..
T Consensus 142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir 221 (365)
T COG1163 142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIR 221 (365)
T ss_pred CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEe
Confidence 9999999998554211 10
Q ss_pred ------HHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHHHHHHhhC
Q 015092 215 ------ILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 215 ------~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
.+...+.....-+|.++|+||+|+...+......+. ...+++||.++.|+++|.+.|.+.+
T Consensus 222 ~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~-------~~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 222 EDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARK-------PNSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred cCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhc-------cceEEEecccCCCHHHHHHHHHHhh
Confidence 111111111135899999999999885544432222 2789999999999999999999876
No 204
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.75 E-value=1.3e-17 Score=154.88 Aligned_cols=146 Identities=19% Similarity=0.205 Sum_probs=98.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceee------------------------------eeCCCCceEEEEEEEEeCCCeeEE
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSI------------------------------VTNKPQTTRHRILGICSGPEYQMI 166 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~------------------------------vs~~~~tt~~~~~~~~~~~~~~~~ 166 (413)
+|+++|++++|||||+++|+.....+ .....++|++.....+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 48999999999999999996332110 112446778877777888999999
Q ss_pred EEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCC-------CchHHHHHHHHccccCCCCCEEEEEecCCCC
Q 015092 167 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (413)
Q Consensus 167 l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~-------~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~ 239 (413)
+|||||+.. +...+..++..+|++|+|+|++.+ ...+....+...... ..+|+++|+||+|+.
T Consensus 81 liDtpG~~~---------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiivvNK~Dl~ 150 (219)
T cd01883 81 ILDAPGHRD---------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL-GVKQLIVAVNKMDDV 150 (219)
T ss_pred EEECCChHH---------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc-CCCeEEEEEEccccc
Confidence 999999532 223345567889999999999874 222333333333331 236899999999997
Q ss_pred C----hhhHHHHHHH----HHhcC---CCccEEEcccCCCCCHH
Q 015092 240 K----PGEIAKKLEW----YEKFT---DVDEVIPVSAKYGHGVE 272 (413)
Q Consensus 240 ~----~~~~~~~~~~----~~~~~---~~~~v~~iSA~~g~gv~ 272 (413)
. .......... +.... ...+++++||++|.|++
T Consensus 151 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 151 TVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 3 2222222222 22221 12579999999999987
No 205
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.74 E-value=4.2e-17 Score=143.69 Aligned_cols=148 Identities=14% Similarity=0.165 Sum_probs=96.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+++|.+|||||||+.+++...+... .+.+ .......+..++ ..+.+|||+|.. . ..++.
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~--~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~--~------------~~~~~ 64 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL--ESPE-GGRFKKEVLVDGQSHLLLIRDEGGAP--D------------AQFAS 64 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC--CCCC-ccceEEEEEECCEEEEEEEEECCCCC--c------------hhHHh
Confidence 699999999999999999887665321 2211 111122233344 568899999952 1 11246
Q ss_pred cccEEEEEeeCCCCC--chHHHHHHHHccccC-CCCCEEEEEecCCCCC--hhhHHH-HHHHHHhcCCCccEEEcccCCC
Q 015092 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIK--PGEIAK-KLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~--~~~~~~-~~~~~~~~~~~~~v~~iSA~~g 268 (413)
.+|++++|+|.++.. .....++..+.+... .+.|+++|+||+|+.. ...+.. ....+.+.....++++|||++|
T Consensus 65 ~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 144 (158)
T cd04103 65 WVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYG 144 (158)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCC
Confidence 899999999998764 333344333332211 4689999999999842 222221 1222332223358999999999
Q ss_pred CCHHHHHHHHHhh
Q 015092 269 HGVEDIRDWILTK 281 (413)
Q Consensus 269 ~gv~~L~~~l~~~ 281 (413)
.||+++|..+.+.
T Consensus 145 ~~i~~~f~~~~~~ 157 (158)
T cd04103 145 LNVERVFQEAAQK 157 (158)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998864
No 206
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.74 E-value=4.2e-17 Score=147.57 Aligned_cols=156 Identities=20% Similarity=0.190 Sum_probs=98.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
+|+++|.+|+|||||+++|....+.. ....+........+... ...+.+|||||.. .+.... ...+.
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~--~~~~~~-------~~~~~ 71 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPE--EYHPTVFENYVTDCRVDGKPVQLALWDTAGQE--EYERLR-------PLSYS 71 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCCh--hccccc-------hhhcC
Confidence 79999999999999999998655431 22223222222222222 3568899999952 222221 12367
Q ss_pred cccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChh----------hH-HHHHHHHHhcCCCccEE
Q 015092 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----------EI-AKKLEWYEKFTDVDEVI 261 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~----------~~-~~~~~~~~~~~~~~~v~ 261 (413)
.+|++++|+|.++.. ......+...++....+.|+++|+||+|+.... .. ......+.+..+..++|
T Consensus 72 ~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (187)
T cd04129 72 KAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYM 151 (187)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEE
Confidence 899999999987643 222222333333322579999999999985311 00 01122233333445799
Q ss_pred EcccCCCCCHHHHHHHHHhhCC
Q 015092 262 PVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 262 ~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
++||++|.|++++++++.+.+.
T Consensus 152 e~Sa~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 152 ECSALTGEGVDDVFEAATRAAL 173 (187)
T ss_pred EccCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999987653
No 207
>PRK09866 hypothetical protein; Provisional
Probab=99.74 E-value=8.5e-17 Score=164.87 Aligned_cols=116 Identities=20% Similarity=0.246 Sum_probs=83.5
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCC--
Q 015092 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK-- 240 (413)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~-- 240 (413)
.+++|+||||+.......+...+.+ ++..||+||||+|+..+....+..+.+.++......|+++|+||+|+.+
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dre 305 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRN 305 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcc
Confidence 4689999999954223335444443 5889999999999988777777777777766222259999999999874
Q ss_pred ---hhhHHHHHHHH--HhcCCCccEEEcccCCCCCHHHHHHHHHhhC
Q 015092 241 ---PGEIAKKLEWY--EKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 241 ---~~~~~~~~~~~--~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
.+.+....... .....+..+||+||++|.|++.|++.|...-
T Consensus 306 eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~ 352 (741)
T PRK09866 306 SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNG 352 (741)
T ss_pred cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCC
Confidence 22333333222 2233467899999999999999999998743
No 208
>PLN03126 Elongation factor Tu; Provisional
Probab=99.73 E-value=3.9e-17 Score=167.22 Aligned_cols=203 Identities=16% Similarity=0.145 Sum_probs=130.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeee---------------eCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV---------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~v---------------s~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 178 (413)
...+|+++|++|+|||||+++|++....+. ....+.|.+.....+..++.+++|+||||+.+
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~--- 156 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD--- 156 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH---
Confidence 345899999999999999999986332211 12234555555555667788999999999532
Q ss_pred hhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCC-EEEEEecCCCCChhhHHH-----HHHHHH
Q 015092 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-----KLEWYE 252 (413)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilV~NK~Dl~~~~~~~~-----~~~~~~ 252 (413)
+...+...+..+|++++|+|+..+...++...+..+.. .++| +++++||+|+.+.++..+ ....+.
T Consensus 157 ------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~ 228 (478)
T PLN03126 157 ------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ--VGVPNMVVFLNKQDQVDDEELLELVELEVRELLS 228 (478)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHH
Confidence 34455666789999999999999988888777777766 6788 778999999986433222 112222
Q ss_pred hc---CCCccEEEcccCCCCC------------------HHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHH
Q 015092 253 KF---TDVDEVIPVSAKYGHG------------------VEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKI 311 (413)
Q Consensus 253 ~~---~~~~~v~~iSA~~g~g------------------v~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki 311 (413)
.. ....+++++||.+|.+ +..|++.|.+..+.+.. ..+.|.++.+.++++
T Consensus 229 ~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r------~~~~p~r~~I~~vf~--- 299 (478)
T PLN03126 229 SYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQR------QTDLPFLLAVEDVFS--- 299 (478)
T ss_pred hcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCC------ccccceeeEEEEEEE---
Confidence 21 1235899999998842 45677777765432211 122343433332210
Q ss_pred HhhcCCCCCceeEEEEEEEEecCCCeeEE
Q 015092 312 FMQYRNEVPYACQVNVVSYKTRPTAKDFI 340 (413)
Q Consensus 312 ~~~~~~eipys~~v~v~~~~~~~~~~~~i 340 (413)
-+.+|....-.+..|..+.|..+.+
T Consensus 300 ----v~g~GtVv~G~V~sG~i~~Gd~v~i 324 (478)
T PLN03126 300 ----ITGRGTVATGRVERGTVKVGETVDI 324 (478)
T ss_pred ----eCCceEEEEEEEEcCeEecCCEEEE
Confidence 1334544555677777666644443
No 209
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.73 E-value=6.3e-17 Score=147.55 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=96.5
Q ss_pred cEEEEEcCCCCCHHHHHH-HHhCCcee---eeeCCCCceE--EEE--E--------EEEeCCCeeEEEEeCCCCchhhhh
Q 015092 116 GYVAVLGKPNVGKSTLAN-QMIGQKLS---IVTNKPQTTR--HRI--L--------GICSGPEYQMILYDTPGIIEKKIH 179 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln-~L~~~~~~---~vs~~~~tt~--~~~--~--------~~~~~~~~~~~l~DtpG~~~~~~~ 179 (413)
.+|+++|.+|||||||+. ++.+..+. ....+.+|.. +.. . ..+......+.+|||+|...
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~---- 78 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD---- 78 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh----
Confidence 489999999999999996 55443321 1122222321 111 1 02334457899999999521
Q ss_pred hHHHHHHHHHHhhcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCCh----------------
Q 015092 180 MLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP---------------- 241 (413)
Q Consensus 180 ~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~---------------- 241 (413)
.+ ...+++.||++|+|+|.++.. ......+...++....+.|+++|+||+|+...
T Consensus 79 ~~-------~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~ 151 (195)
T cd01873 79 KD-------RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPI 151 (195)
T ss_pred hh-------hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhccccccccc
Confidence 11 123588999999999998764 22322223333332257899999999998631
Q ss_pred ---hhH-HHHHHHHHhcCCCccEEEcccCCCCCHHHHHHHHHhh
Q 015092 242 ---GEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (413)
Q Consensus 242 ---~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~ 281 (413)
..+ ......+....+. ++++|||++|.||+++++.+++.
T Consensus 152 ~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 152 KNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred ccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 111 1122333333343 89999999999999999998764
No 210
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.73 E-value=1.6e-16 Score=147.01 Aligned_cols=170 Identities=18% Similarity=0.200 Sum_probs=108.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCcee-eeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~-~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
...+|+++|++|||||||+++++...+. ...++.+............+...+.+|||||. ..+..+ ...+
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~--~~~~~~-------~~~~ 78 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ--EKFGGL-------RDGY 78 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCc--hhhhhh-------hHHH
Confidence 3458999999999999999877654432 11222232222222223445678999999994 333332 2334
Q ss_pred cccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCC
Q 015092 193 GINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
+..+|++++|+|.++... ....++....+. ..+.|+++|+||+|+............. ...+ ..++++||++|.|
T Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~i~lv~nK~Dl~~~~~~~~~~~~~-~~~~-~~~~e~Sa~~~~~ 155 (215)
T PTZ00132 79 YIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV-CENIPIVLVGNKVDVKDRQVKARQITFH-RKKN-LQYYDISAKSNYN 155 (215)
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccCccccCCHHHHHHH-HHcC-CEEEEEeCCCCCC
Confidence 678999999999986542 222333332222 2578999999999986432212222222 2222 4789999999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCccC
Q 015092 271 VEDIRDWILTKLPLGPAYYPKDIVS 295 (413)
Q Consensus 271 v~~L~~~l~~~l~~~~~~~~~~~~t 295 (413)
+++++.+|++.+...|..+--+..+
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~ 180 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPA 180 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcc
Confidence 9999999999887666654444333
No 211
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.72 E-value=8.1e-17 Score=137.47 Aligned_cols=139 Identities=25% Similarity=0.405 Sum_probs=98.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
+|.++|++++|||||+++|.+.... ...|.... +.=.+||||| +.-. ..++.........+|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~-----~~KTq~i~--------~~~~~IDTPG--EyiE---~~~~y~aLi~ta~da 64 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR-----YKKTQAIE--------YYDNTIDTPG--EYIE---NPRFYHALIVTAQDA 64 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC-----cCccceeE--------ecccEEECCh--hhee---CHHHHHHHHHHHhhC
Confidence 7999999999999999999997653 12222211 1124699999 3211 123445555566799
Q ss_pred cEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCC-ChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHH
Q 015092 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (413)
Q Consensus 197 D~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~-~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~ 275 (413)
|+|++|.|++.+.......+... -.+|+|=|+||+|+. +...+....+++.. .+...+|++|+.+|+|+++|.
T Consensus 65 d~V~ll~dat~~~~~~pP~fa~~-----f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~-aG~~~if~vS~~~~eGi~eL~ 138 (143)
T PF10662_consen 65 DVVLLLQDATEPRSVFPPGFASM-----FNKPVIGVITKIDLPSDDANIERAKKWLKN-AGVKEIFEVSAVTGEGIEELK 138 (143)
T ss_pred CEEEEEecCCCCCccCCchhhcc-----cCCCEEEEEECccCccchhhHHHHHHHHHH-cCCCCeEEEECCCCcCHHHHH
Confidence 99999999998754433333322 368999999999998 44455554555544 456788999999999999999
Q ss_pred HHHH
Q 015092 276 DWIL 279 (413)
Q Consensus 276 ~~l~ 279 (413)
++|.
T Consensus 139 ~~L~ 142 (143)
T PF10662_consen 139 DYLE 142 (143)
T ss_pred HHHh
Confidence 9985
No 212
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.72 E-value=3.9e-17 Score=166.32 Aligned_cols=149 Identities=21% Similarity=0.226 Sum_probs=100.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceee------------------------e------eCCCCceEEEEEEEEeCCCee
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI------------------------V------TNKPQTTRHRILGICSGPEYQ 164 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~------------------------v------s~~~~tt~~~~~~~~~~~~~~ 164 (413)
..+|+++|++++|||||+++|+.....+ + ....+.|.+.....+..++..
T Consensus 7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~ 86 (426)
T TIGR00483 7 HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYE 86 (426)
T ss_pred eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeE
Confidence 4589999999999999999998532111 0 123467777777778888899
Q ss_pred EEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCC---CchHHHHHHHHccccCCCCCEEEEEecCCCCC-
Q 015092 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA---PERIDEILEEGVGDHKDKLPILLVLNKKDLIK- 240 (413)
Q Consensus 165 ~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~---~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~- 240 (413)
+.||||||+ .. +...+...+..+|++|+|+|++++ ...+..+.+.+++.. ...|+++|+||+|+.+
T Consensus 87 i~iiDtpGh--~~-------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~ 156 (426)
T TIGR00483 87 VTIVDCPGH--RD-------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVNY 156 (426)
T ss_pred EEEEECCCH--HH-------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccCc
Confidence 999999994 22 334455567899999999999987 333333322233331 2357899999999974
Q ss_pred -hhhHHH----HHHHHHhcC---CCccEEEcccCCCCCHHH
Q 015092 241 -PGEIAK----KLEWYEKFT---DVDEVIPVSAKYGHGVED 273 (413)
Q Consensus 241 -~~~~~~----~~~~~~~~~---~~~~v~~iSA~~g~gv~~ 273 (413)
...... ....+.... ...+++++||++|.|+.+
T Consensus 157 ~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 157 DEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 222211 112222221 135799999999999985
No 213
>PRK12740 elongation factor G; Reviewed
Probab=99.72 E-value=2.8e-17 Score=176.33 Aligned_cols=223 Identities=21% Similarity=0.166 Sum_probs=140.3
Q ss_pred EcCCCCCHHHHHHHHhCCceee-----------eeC------CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHH
Q 015092 121 LGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDS 183 (413)
Q Consensus 121 vG~~~~GKSsLln~L~~~~~~~-----------vs~------~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~ 183 (413)
+|++|+|||||+++|+.....+ +.+ ..+.|.......+.+++..+++|||||+.+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~-------- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD-------- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH--------
Confidence 6999999999999996543321 111 133444444456777889999999999632
Q ss_pred HHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh--hH-HHHHHHHH--------
Q 015092 184 MMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EI-AKKLEWYE-------- 252 (413)
Q Consensus 184 ~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~--~~-~~~~~~~~-------- 252 (413)
+...+..++..+|++|+|+|++.+.......++..+.. .++|+++|+||+|+.... .. ....+.+.
T Consensus 73 -~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~--~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~ 149 (668)
T PRK12740 73 -FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEK--YGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQL 149 (668)
T ss_pred -HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEe
Confidence 22345566789999999999998877766666666655 679999999999986321 11 11100000
Q ss_pred --------------------------------------------------------------------------------
Q 015092 253 -------------------------------------------------------------------------------- 252 (413)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (413)
T Consensus 150 p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~ 229 (668)
T PRK12740 150 PIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRK 229 (668)
T ss_pred cccCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHH
Confidence
Q ss_pred --hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCC--CC-C-----ccCCchhhHHHHHHHHHHHHhhcCCCCCce
Q 015092 253 --KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYY--PK-D-----IVSEHPERFFVGEIIREKIFMQYRNEVPYA 322 (413)
Q Consensus 253 --~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~--~~-~-----~~t~~~~~~~~~eiiReki~~~~~~eipys 322 (413)
....+.|++..||++|.|++.|++.|...+|.+.... .. . .....+...+++.++ +++ ..+..+..
T Consensus 230 ~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~--k~~--~~~~~G~i 305 (668)
T PRK12740 230 ATLAGEIVPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVF--KTM--DDPFVGKL 305 (668)
T ss_pred HHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEE--Eee--ecCCCCcE
Confidence 0112457899999999999999999999998663210 00 0 000111121122121 111 25667899
Q ss_pred eEEEEEEEEecCCCeeEEEEEEEEeeCCcceEEeec
Q 015092 323 CQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGK 358 (413)
Q Consensus 323 ~~v~v~~~~~~~~~~~~i~~~~~~~r~~~~~i~iG~ 358 (413)
+.++|.+|+.+.|..+++......++.++.+.+.|.
T Consensus 306 ~~~RV~sG~L~~g~~v~~~~~~~~~~i~~l~~l~g~ 341 (668)
T PRK12740 306 SLVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHGK 341 (668)
T ss_pred EEEEEeeeEEcCCCEEEeCCCCCcEEecceeeecCC
Confidence 999999999998876655432222333344444443
No 214
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=4e-17 Score=160.14 Aligned_cols=198 Identities=23% Similarity=0.263 Sum_probs=137.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceee--------------eeCCCCceEEEEEEEEe-----CCCeeEEEEeCCCCchh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSI--------------VTNKPQTTRHRILGICS-----GPEYQMILYDTPGIIEK 176 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~--------------vs~~~~tt~~~~~~~~~-----~~~~~~~l~DtpG~~~~ 176 (413)
.+.+|+.|-+.|||||.++|+...... .....|.|.......+. ...+.++++||||+++.
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 378999999999999999997544321 12223444333222222 24578999999999886
Q ss_pred hhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCC
Q 015092 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (413)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (413)
++. +.+++..|..+|+|||++.|.+.++..-..+.-. .+.-+|-|+||+||+..+ .......+....+
T Consensus 90 sYE---------VSRSLAACEGalLvVDAsQGveAQTlAN~YlAle--~~LeIiPViNKIDLP~Ad-pervk~eIe~~iG 157 (603)
T COG0481 90 SYE---------VSRSLAACEGALLVVDASQGVEAQTLANVYLALE--NNLEIIPVLNKIDLPAAD-PERVKQEIEDIIG 157 (603)
T ss_pred EEE---------ehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH--cCcEEEEeeecccCCCCC-HHHHHHHHHHHhC
Confidence 654 3445779999999999999987765432222222 678999999999998543 2333444444444
Q ss_pred C--ccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHH-hhcCCCCCceeEEEEEEEEec
Q 015092 257 V--DEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIF-MQYRNEVPYACQVNVVSYKTR 333 (413)
Q Consensus 257 ~--~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~-~~~~~eipys~~v~v~~~~~~ 333 (413)
. ...+.+||++|.|++++++.|++.+|++... .+.|.+. -|| .++++..|-.+.+++..|+.+
T Consensus 158 id~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~------~~~pLkA--------LifDS~yD~Y~GVv~~vRi~dG~ik 223 (603)
T COG0481 158 IDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGD------PDAPLKA--------LIFDSWYDNYLGVVVLVRIFDGTLK 223 (603)
T ss_pred CCcchheeEecccCCCHHHHHHHHHhhCCCCCCC------CCCcceE--------EEEeccccccceEEEEEEEeeceec
Confidence 3 3579999999999999999999999865432 1223221 223 356888999999999999988
Q ss_pred CCCeeE
Q 015092 334 PTAKDF 339 (413)
Q Consensus 334 ~~~~~~ 339 (413)
+|..+.
T Consensus 224 ~gdki~ 229 (603)
T COG0481 224 KGDKIR 229 (603)
T ss_pred CCCEEE
Confidence 765443
No 215
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=8.3e-17 Score=143.61 Aligned_cols=158 Identities=18% Similarity=0.167 Sum_probs=110.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCce-EEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt-~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
+..+|.++|.+|||||+++.++....+. +....|- .+..... +......+.+|||+| ++.+.. ...
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~--~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaG--Qerf~t-------i~~ 79 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFN--TSFISTIGIDFKIKTIELDGKKIKLQIWDTAG--QERFRT-------ITT 79 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCc--CCccceEEEEEEEEEEEeCCeEEEEEEEEccc--chhHHH-------HHH
Confidence 4458999999999999999999888764 2222222 1111122 333446788999999 555443 467
Q ss_pred hhcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCC
Q 015092 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
++++.|+.+++|+|.++.. +....|+...-.......|.+||+||+|+...+.+. +..+.+....+ ..++++||++
T Consensus 80 sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G-~~F~EtSAk~ 158 (207)
T KOG0078|consen 80 AYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYG-IKFFETSAKT 158 (207)
T ss_pred HHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhC-CeEEEccccC
Confidence 7799999999999998653 444554443333323589999999999998654432 23334444334 4789999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 015092 268 GHGVEDIRDWILTKLP 283 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~ 283 (413)
|.||++.+-.|+..+.
T Consensus 159 ~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 159 NFNIEEAFLSLARDIL 174 (207)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999887665
No 216
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.72 E-value=1e-16 Score=162.09 Aligned_cols=161 Identities=19% Similarity=0.223 Sum_probs=102.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceee--eeCCCCceEEEEE--------------------EEEeC------CCeeE
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRIL--------------------GICSG------PEYQM 165 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~--vs~~~~tt~~~~~--------------------~~~~~------~~~~~ 165 (413)
...+|+++|++++|||||+++|.+..... .....+.|..... ..+.. .+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 34589999999999999999997642110 0001112211110 00011 14679
Q ss_pred EEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCC-chHHHHHHHHccccCCCCCEEEEEecCCCCChhhH
Q 015092 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (413)
Q Consensus 166 ~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~-~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~ 244 (413)
.+|||||+ .. +...+...+..+|++|+|+|++++. ..+....+..+... ...|+++|+||+|+.+....
T Consensus 83 ~liDtPGh--~~-------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~~ 152 (406)
T TIGR03680 83 SFVDAPGH--ET-------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-GIKNIVIVQNKIDLVSKEKA 152 (406)
T ss_pred EEEECCCH--HH-------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-CCCeEEEEEEccccCCHHHH
Confidence 99999995 22 3344556677899999999999875 44444444444331 23578999999999865433
Q ss_pred HHHHHHHHhc-----CCCccEEEcccCCCCCHHHHHHHHHhhCCC
Q 015092 245 AKKLEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 245 ~~~~~~~~~~-----~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~ 284 (413)
......+... ....+++++||++|.|+++|+++|...++.
T Consensus 153 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 153 LENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred HHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence 2222222211 113579999999999999999999988764
No 217
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.72 E-value=1.8e-16 Score=147.01 Aligned_cols=112 Identities=24% Similarity=0.324 Sum_probs=79.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceE---------------E--EEEEEEe--------CCCeeEEEEeCC
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR---------------H--RILGICS--------GPEYQMILYDTP 171 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~---------------~--~~~~~~~--------~~~~~~~l~Dtp 171 (413)
+|+|+|++++|||||+++|+.....+.....++++ . .+...+. ..+.++++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 69999999999999999997654321111111111 1 0111122 226789999999
Q ss_pred CCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCC
Q 015092 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (413)
Q Consensus 172 G~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~ 239 (413)
|+.+ +...+..++..+|++|+|+|+..+.......++..... .+.|+++|+||+|+.
T Consensus 82 G~~~---------f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVD---------FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred Cccc---------cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCcc
Confidence 9643 33456677899999999999999887777766666555 578999999999985
No 218
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=7.2e-17 Score=140.49 Aligned_cols=157 Identities=20% Similarity=0.251 Sum_probs=112.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeC-CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~-~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
.++.++|..|||||+|+-+++.+.+..+.+ +.|...-.....+.....++.+|||+| ++.+..+ .+++++
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaG--qe~frsv-------~~syYr 77 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAG--QESFRSV-------TRSYYR 77 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCC--cHHHHHH-------HHHHhc
Confidence 379999999999999999999999875443 111111111222444556789999999 5555444 566799
Q ss_pred cccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCccEEEcccCCCCCH
Q 015092 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHGV 271 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~iSA~~g~gv 271 (413)
.|-.+|+|+|++... ...+.|+....+....+.-++|++||+||...+.+.. .-+.+.+..++ .++.+||++++|+
T Consensus 78 ~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgL-ifmETSakt~~~V 156 (216)
T KOG0098|consen 78 GAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGL-IFMETSAKTAENV 156 (216)
T ss_pred cCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCc-eeehhhhhhhhhH
Confidence 999999999998653 5677777776555447889999999999986655442 23344444444 6789999999999
Q ss_pred HHHHHHHHhhC
Q 015092 272 EDIRDWILTKL 282 (413)
Q Consensus 272 ~~L~~~l~~~l 282 (413)
++.|.-....+
T Consensus 157 EEaF~nta~~I 167 (216)
T KOG0098|consen 157 EEAFINTAKEI 167 (216)
T ss_pred HHHHHHHHHHH
Confidence 99887765543
No 219
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.71 E-value=8.8e-17 Score=141.21 Aligned_cols=154 Identities=27% Similarity=0.374 Sum_probs=103.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCce-EEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt-~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+|+++|.++||||||+++|.+..+. .....|. .+.....+. .....+.+||++|. ..+..+.. ..+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~--~~~~~~~~-------~~~ 69 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFP--ENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQ--ERFDSLRD-------IFY 69 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTT--SSSETTSSEEEEEEEEEETTEEEEEEEEEETTS--GGGHHHHH-------HHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhccc--ccccccccccccccccccccccccccccccccc--cccccccc-------ccc
Confidence 6899999999999999999987754 2222232 333333333 34456899999994 44443332 337
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
..+|++|+|+|.++.. .....|+...........|++||+||.|+.....+. .....+....+ .+++.+||+++.|
T Consensus 70 ~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~ 148 (162)
T PF00071_consen 70 RNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-VPYFEVSAKNGEN 148 (162)
T ss_dssp TTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-SEEEEEBTTTTTT
T ss_pred cccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhC-CEEEEEECCCCCC
Confidence 8999999999987643 334444443333322368999999999987633322 12233333334 6899999999999
Q ss_pred HHHHHHHHHhhC
Q 015092 271 VEDIRDWILTKL 282 (413)
Q Consensus 271 v~~L~~~l~~~l 282 (413)
+.+++..+++.+
T Consensus 149 v~~~f~~~i~~i 160 (162)
T PF00071_consen 149 VKEIFQELIRKI 160 (162)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 220
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.71 E-value=1e-16 Score=164.60 Aligned_cols=150 Identities=21% Similarity=0.189 Sum_probs=101.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeC----------CC----------------------CceEEEEEEEEeCCC
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTN----------KP----------------------QTTRHRILGICSGPE 162 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~----------~~----------------------~tt~~~~~~~~~~~~ 162 (413)
..+|+++||+|+|||||+++|+.....+... .. +.|.+.....+.+++
T Consensus 27 ~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~ 106 (474)
T PRK05124 27 LLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEK 106 (474)
T ss_pred ceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCC
Confidence 3589999999999999999998665432211 12 334455555567788
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh
Q 015092 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (413)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~ 242 (413)
.++.|+||||+ .. +...+...+..+|++|+|+|+..+...++...+.++... ...|+|+|+||+|+....
T Consensus 107 ~~i~~iDTPGh--~~-------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-g~~~iIvvvNKiD~~~~~ 176 (474)
T PRK05124 107 RKFIIADTPGH--EQ-------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-GIKHLVVAVNKMDLVDYS 176 (474)
T ss_pred cEEEEEECCCc--HH-------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-CCCceEEEEEeeccccch
Confidence 89999999994 22 333444557899999999999988766555444444332 225789999999997422
Q ss_pred --hHHHHHHHHH----hc--CCCccEEEcccCCCCCHHHH
Q 015092 243 --EIAKKLEWYE----KF--TDVDEVIPVSAKYGHGVEDI 274 (413)
Q Consensus 243 --~~~~~~~~~~----~~--~~~~~v~~iSA~~g~gv~~L 274 (413)
........+. .. ....+++++||++|.|++++
T Consensus 177 ~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 177 EEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2222222222 11 12468999999999999764
No 221
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.71 E-value=1.1e-16 Score=161.86 Aligned_cols=147 Identities=24% Similarity=0.209 Sum_probs=101.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeee--------------------------------CCCCceEEEEEEEEeCCCee
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT--------------------------------NKPQTTRHRILGICSGPEYQ 164 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs--------------------------------~~~~tt~~~~~~~~~~~~~~ 164 (413)
+|+++||+++|||||+++|+.....+.. ...+.|.+.....+.+++.+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 7999999999999999999754322111 12244566666667788889
Q ss_pred EEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh--
Q 015092 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG-- 242 (413)
Q Consensus 165 ~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~-- 242 (413)
+.|+||||+. . +...+..++..+|++|+|+|+..+...++...+.++... ...++++|+||+|+....
T Consensus 82 ~~liDtPGh~--~-------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~~~iivviNK~D~~~~~~~ 151 (406)
T TIGR02034 82 FIVADTPGHE--Q-------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GIRHVVLAVNKMDLVDYDEE 151 (406)
T ss_pred EEEEeCCCHH--H-------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CCCcEEEEEEecccccchHH
Confidence 9999999953 2 333444567899999999999998877766555555442 234688999999997422
Q ss_pred hHHHHHHHHH---hcCCC--ccEEEcccCCCCCHHH
Q 015092 243 EIAKKLEWYE---KFTDV--DEVIPVSAKYGHGVED 273 (413)
Q Consensus 243 ~~~~~~~~~~---~~~~~--~~v~~iSA~~g~gv~~ 273 (413)
........+. ...++ .+++++||++|.|+++
T Consensus 152 ~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 152 VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 1222222221 21222 4799999999999985
No 222
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.71 E-value=2.1e-16 Score=134.68 Aligned_cols=149 Identities=22% Similarity=0.222 Sum_probs=95.5
Q ss_pred EEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccc
Q 015092 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (413)
Q Consensus 120 ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD 197 (413)
++|++|+|||||+|+|.+..... .....+....... .....+..+.+|||||+.. ... .....+..+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~-------~~~~~~~~~~ 70 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-EEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQER--FRS-------LRRLYYRGAD 70 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-cccccchhheeeEEEEECCEEEEEEEEecCChHH--HHh-------HHHHHhcCCC
Confidence 57999999999999999877621 1111111111111 2222357899999999532 111 1244578999
Q ss_pred EEEEEeeCCCCCchHHHHHH---HHccccCCCCCEEEEEecCCCCChhhHHHH--HHHHHhcCCCccEEEcccCCCCCHH
Q 015092 198 CIVVLVDACKAPERIDEILE---EGVGDHKDKLPILLVLNKKDLIKPGEIAKK--LEWYEKFTDVDEVIPVSAKYGHGVE 272 (413)
Q Consensus 198 ~vl~VvD~~~~~~~~~~~l~---~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~--~~~~~~~~~~~~v~~iSA~~g~gv~ 272 (413)
++++|+|++.+........+ ........+.|+++|+||+|+......... ..... .....+++++||.++.|+.
T Consensus 71 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~i~ 149 (157)
T cd00882 71 GIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLA-KELGVPYFETSAKTGENVE 149 (157)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHH-hhcCCcEEEEecCCCCChH
Confidence 99999999876533222111 111222268999999999999765433322 12222 2234689999999999999
Q ss_pred HHHHHHH
Q 015092 273 DIRDWIL 279 (413)
Q Consensus 273 ~L~~~l~ 279 (413)
+++++|.
T Consensus 150 ~~~~~l~ 156 (157)
T cd00882 150 ELFEELA 156 (157)
T ss_pred HHHHHHh
Confidence 9999885
No 223
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.71 E-value=7.1e-17 Score=153.42 Aligned_cols=164 Identities=21% Similarity=0.213 Sum_probs=120.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeC-CCeeEEEEeCCCCchhhh--hhHHHHHHHHHHhhc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKI--HMLDSMMMKNVRSAG 193 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~-~~~~~~l~DtpG~~~~~~--~~l~~~~~~~~~~~~ 193 (413)
-|++||.||+|||||++++...+.. +.++|.||..+..+++.. .+..+++-|.||+.+... ..+.-.| ++.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPK-IadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~F----LrHI 235 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPK-IADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRF----LRHI 235 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCc-ccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHH----HHHH
Confidence 5999999999999999999988866 699999999999999875 566799999999986432 2233333 4446
Q ss_pred ccccEEEEEeeCCCCC----chHHHHHHHHccccC---CCCCEEEEEecCCCC-ChhhHHHHHHHHHhcCCCccEEEccc
Q 015092 194 INADCIVVLVDACKAP----ERIDEILEEGVGDHK---DKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSA 265 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~----~~~~~~l~~~l~~~~---~~~p~ilV~NK~Dl~-~~~~~~~~~~~~~~~~~~~~v~~iSA 265 (413)
..|-++++|||.+... ......+...+..+. .++|.+||+||+|+. ..+........+.+.......+++||
T Consensus 236 ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa 315 (369)
T COG0536 236 ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISA 315 (369)
T ss_pred HhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeeh
Confidence 7899999999987432 222333333333322 579999999999955 44555555555555444333334999
Q ss_pred CCCCCHHHHHHHHHhhCCCC
Q 015092 266 KYGHGVEDIRDWILTKLPLG 285 (413)
Q Consensus 266 ~~g~gv~~L~~~l~~~l~~~ 285 (413)
.++.|+++|+..+.+.+...
T Consensus 316 ~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 316 LTREGLDELLRALAELLEET 335 (369)
T ss_pred hcccCHHHHHHHHHHHHHHh
Confidence 99999999999998887654
No 224
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.70 E-value=2.2e-16 Score=159.70 Aligned_cols=160 Identities=19% Similarity=0.194 Sum_probs=103.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCcee--eeeCCCCceEEEEEEEEeC---------------------C-----CeeEE
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSG---------------------P-----EYQMI 166 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~--~vs~~~~tt~~~~~~~~~~---------------------~-----~~~~~ 166 (413)
..+|+++|+.++|||||+.+|.+.... ......+.|.........+ + ..++.
T Consensus 9 ~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 88 (411)
T PRK04000 9 EVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVS 88 (411)
T ss_pred cEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEE
Confidence 458999999999999999999763211 0011123333221100000 0 25799
Q ss_pred EEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCC-chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH
Q 015092 167 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (413)
Q Consensus 167 l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~-~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~ 245 (413)
||||||+ .. +...+...+..+|++++|+|++++. .......+..+... ...|+++|+||+|+.+.....
T Consensus 89 liDtPG~--~~-------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~-~i~~iiVVlNK~Dl~~~~~~~ 158 (411)
T PRK04000 89 FVDAPGH--ET-------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII-GIKNIVIVQNKIDLVSKERAL 158 (411)
T ss_pred EEECCCH--HH-------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEEeeccccchhHH
Confidence 9999994 22 3345556667899999999999875 44444444444431 234789999999998654332
Q ss_pred HHHHHHHhc-----CCCccEEEcccCCCCCHHHHHHHHHhhCCC
Q 015092 246 KKLEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 246 ~~~~~~~~~-----~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~ 284 (413)
...+.+... ....+++++||++|.|+++|+++|...++.
T Consensus 159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 222222211 123579999999999999999999998764
No 225
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.69 E-value=1.5e-16 Score=135.07 Aligned_cols=161 Identities=20% Similarity=0.211 Sum_probs=111.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCC-CCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-PQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~-~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
..+|.++|.+|||||||+-+++...+....+. .|.......-.+.....++.+|||+| ++.++.+ ..+++
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAG--qErFRtL-------TpSyy 81 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAG--QERFRTL-------TPSYY 81 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccc--hHhhhcc-------CHhHh
Confidence 45899999999999999999998887532222 22222222222445567899999999 6666655 45569
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHcccc--CCCCCEEEEEecCCCCChhhHH--HHHHHHHhcCCCccEEEcccCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~--~~~~p~ilV~NK~Dl~~~~~~~--~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
+.|..+|+|+|++... ...+.|+.++ ... ..++-.++|+||+|....+.+. +-+...++.. .-++++||++
T Consensus 82 RgaqGiIlVYDVT~Rdtf~kLd~W~~El-d~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~--~LFiE~SAkt 158 (209)
T KOG0080|consen 82 RGAQGIILVYDVTSRDTFVKLDIWLKEL-DLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHR--CLFIECSAKT 158 (209)
T ss_pred ccCceeEEEEEccchhhHHhHHHHHHHH-HhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhC--cEEEEcchhh
Confidence 9999999999998654 3444554442 221 1567778999999987443332 2223333322 4579999999
Q ss_pred CCCHHHHHHHHHhhCCCCCC
Q 015092 268 GHGVEDIRDWILTKLPLGPA 287 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~~~~~ 287 (413)
.+||...|+.|+..+-+.|.
T Consensus 159 ~~~V~~~FeelveKIi~tp~ 178 (209)
T KOG0080|consen 159 RENVQCCFEELVEKIIETPS 178 (209)
T ss_pred hccHHHHHHHHHHHHhcCcc
Confidence 99999999999988876654
No 226
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.69 E-value=2.9e-16 Score=145.52 Aligned_cols=173 Identities=24% Similarity=0.267 Sum_probs=127.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015092 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
.+.+.+|.|+|.+|+|||||+|+|++.....++..+.+++.......++++..+++|||||+.+.... +....+.++.
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~--D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDK--DAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhh--hHHHHHHHHH
Confidence 34556888999999999999999998888777777777776666667777889999999999663221 2334556777
Q ss_pred hcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh------------hHH----HHHHHHH-hc
Q 015092 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG------------EIA----KKLEWYE-KF 254 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~------------~~~----~~~~~~~-~~ 254 (413)
++...|++++++|+.++.-..+..+++.+.....+.|+++++|.+|+..+. .+. ....... ..
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~ 193 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF 193 (296)
T ss_pred HhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 889999999999999887666665555443333568999999999986431 011 1111111 12
Q ss_pred CCCccEEEcccCCCCCHHHHHHHHHhhCCCCC
Q 015092 255 TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (413)
Q Consensus 255 ~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~ 286 (413)
...-|++.+|+..+.|++.|..+++..+|...
T Consensus 194 q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~ 225 (296)
T COG3596 194 QEVKPVVAVSGRLPWGLKELVRALITALPVEA 225 (296)
T ss_pred hhcCCeEEeccccCccHHHHHHHHHHhCcccc
Confidence 23458899999999999999999999998543
No 227
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.69 E-value=2.3e-16 Score=168.04 Aligned_cols=149 Identities=24% Similarity=0.227 Sum_probs=101.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeC----------CCCc----------------------eEEEEEEEEeCCC
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTN----------KPQT----------------------TRHRILGICSGPE 162 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~----------~~~t----------------------t~~~~~~~~~~~~ 162 (413)
..+|+|+|++|+|||||+|+|+.....+++. ..++ |.+.....+.+++
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~ 103 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK 103 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC
Confidence 3479999999999999999998765544321 2333 4444445566778
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCC--
Q 015092 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK-- 240 (413)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~-- 240 (413)
.++.|+||||+. . +...+...+..+|++|+|+|+..+...++...+.++... ...|+++|+||+|+.+
T Consensus 104 ~~~~liDtPG~~--~-------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~~~iivvvNK~D~~~~~ 173 (632)
T PRK05506 104 RKFIVADTPGHE--Q-------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GIRHVVLAVNKMDLVDYD 173 (632)
T ss_pred ceEEEEECCChH--H-------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CCCeEEEEEEecccccch
Confidence 899999999952 2 223344457899999999999988766555544444441 2357889999999974
Q ss_pred hhhHHHHHHHHH---hcCCC--ccEEEcccCCCCCHHH
Q 015092 241 PGEIAKKLEWYE---KFTDV--DEVIPVSAKYGHGVED 273 (413)
Q Consensus 241 ~~~~~~~~~~~~---~~~~~--~~v~~iSA~~g~gv~~ 273 (413)
..........+. ...++ .+++++||++|.|+.+
T Consensus 174 ~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 174 QEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 222222222222 22233 4699999999999974
No 228
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.69 E-value=1.9e-16 Score=161.49 Aligned_cols=156 Identities=18% Similarity=0.158 Sum_probs=106.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCcee------------------------eee------CCCCceEEEEEEEEeCCCee
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLS------------------------IVT------NKPQTTRHRILGICSGPEYQ 164 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~------------------------~vs------~~~~tt~~~~~~~~~~~~~~ 164 (413)
..+|+++|+.++|||||+.+|+..... .+. ...+.|.+.....+.+++..
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~ 86 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYY 86 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeE
Confidence 458999999999999999999752111 011 12345555555556788899
Q ss_pred EEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCC-------chHHHHHHHHccccCCCCC-EEEEEecC
Q 015092 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLP-ILLVLNKK 236 (413)
Q Consensus 165 ~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~-------~~~~~~l~~~l~~~~~~~p-~ilV~NK~ 236 (413)
++|+||||+.+ +...+...+..+|++|+|||+..+. ..++...+.+++. .+.| +|+++||+
T Consensus 87 i~lIDtPGh~~---------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~--~gi~~iiv~vNKm 155 (446)
T PTZ00141 87 FTIIDAPGHRD---------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT--LGVKQMIVCINKM 155 (446)
T ss_pred EEEEECCChHH---------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH--cCCCeEEEEEEcc
Confidence 99999999532 4455666788999999999999875 3566666666666 5766 57899999
Q ss_pred CCCC----hhhHHHHHHHHHh---cCC----CccEEEcccCCCCCHHH------------HHHHHHhh
Q 015092 237 DLIK----PGEIAKKLEWYEK---FTD----VDEVIPVSAKYGHGVED------------IRDWILTK 281 (413)
Q Consensus 237 Dl~~----~~~~~~~~~~~~~---~~~----~~~v~~iSA~~g~gv~~------------L~~~l~~~ 281 (413)
|+.. ..........+.. ..+ ..+++++||.+|.|+.+ |++.|...
T Consensus 156 D~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~ 223 (446)
T PTZ00141 156 DDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL 223 (446)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC
Confidence 9532 2222222222221 112 25799999999999964 77776543
No 229
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=2.8e-16 Score=139.75 Aligned_cols=157 Identities=18% Similarity=0.214 Sum_probs=113.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeee-CCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs-~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
.+|+++|.++||||-|+.++....+..-+ .+.|.+.......+...-....+|||+| ++.++.+ ...+++
T Consensus 15 FKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAG--QERyrAi-------tSaYYr 85 (222)
T KOG0087|consen 15 FKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAG--QERYRAI-------TSAYYR 85 (222)
T ss_pred EEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccc--hhhhccc-------cchhhc
Confidence 47999999999999999999999887533 3334444444444555556788999999 5555443 455689
Q ss_pred cccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCCCH
Q 015092 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGV 271 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~gv 271 (413)
.|-.+|+|+|++... +....|+.++......+++++||+||+||...+.+. +....+.+..+ -.++++||..+.|+
T Consensus 86 gAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~-l~f~EtSAl~~tNV 164 (222)
T KOG0087|consen 86 GAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEG-LFFLETSALDATNV 164 (222)
T ss_pred ccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcC-ceEEEecccccccH
Confidence 999999999998654 556677777665555789999999999997633322 12222333222 36899999999999
Q ss_pred HHHHHHHHhhC
Q 015092 272 EDIRDWILTKL 282 (413)
Q Consensus 272 ~~L~~~l~~~l 282 (413)
+..+..+...+
T Consensus 165 e~aF~~~l~~I 175 (222)
T KOG0087|consen 165 EKAFERVLTEI 175 (222)
T ss_pred HHHHHHHHHHH
Confidence 99987776544
No 230
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.67 E-value=3.3e-16 Score=144.74 Aligned_cols=157 Identities=25% Similarity=0.325 Sum_probs=97.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeee---eCC---------------CCceEEEEEEEE-----eCCCeeEEEEeCCCC
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIV---TNK---------------PQTTRHRILGIC-----SGPEYQMILYDTPGI 173 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~v---s~~---------------~~tt~~~~~~~~-----~~~~~~~~l~DtpG~ 173 (413)
+|+|+|++|+|||||+++|+....... ... .+.|.......+ ......+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999987554321 001 111111111111 123478999999996
Q ss_pred chhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCC------h-hh---
Q 015092 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK------P-GE--- 243 (413)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~------~-~~--- 243 (413)
.+ + ...+..++..+|++|+|+|+.++.......++..+.. .+.|+++|+||+|+.. . +.
T Consensus 82 ~~--f-------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~--~~~p~iiviNK~D~~~~~~~l~~~~~~~~ 150 (213)
T cd04167 82 VN--F-------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL--EGLPIVLVINKIDRLILELKLPPNDAYFK 150 (213)
T ss_pred cc--h-------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCcccccCCHHHHHHH
Confidence 43 2 2334556789999999999988776555554444443 4689999999999851 1 11
Q ss_pred HHHHHHHHH---hcCC------Cc----cEEEcccCCCCCHH--------HHHHHHHhhCCC
Q 015092 244 IAKKLEWYE---KFTD------VD----EVIPVSAKYGHGVE--------DIRDWILTKLPL 284 (413)
Q Consensus 244 ~~~~~~~~~---~~~~------~~----~v~~iSA~~g~gv~--------~L~~~l~~~l~~ 284 (413)
+....+.+. .... +. .+++.||+.+.+.. +|++.|.+.+|.
T Consensus 151 l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 212 (213)
T cd04167 151 LRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIPS 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCCC
Confidence 111111111 1111 12 37888999998776 677777766653
No 231
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.67 E-value=2.6e-15 Score=147.13 Aligned_cols=195 Identities=18% Similarity=0.226 Sum_probs=133.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeee---------e------CCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhH
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIV---------T------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML 181 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~v---------s------~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l 181 (413)
+|+|+.|.+.|||||++.|+.+....- . ...|.|.-....-+.|++..++++||||+.+..
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG---- 82 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG---- 82 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc----
Confidence 799999999999999999987653321 1 112333333333467889999999999976532
Q ss_pred HHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhh---HHHHHHHHHhc----
Q 015092 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKF---- 254 (413)
Q Consensus 182 ~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~---- 254 (413)
..+.+.++.+|.++++||+..++-+++..+..-.-. .+.+.|+|+||+|+...+. +.+..+.+-..
T Consensus 83 -----GEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~--~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~d 155 (603)
T COG1217 83 -----GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA--LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATD 155 (603)
T ss_pred -----chhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH--cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCCh
Confidence 234555889999999999999998888877654333 5788899999999986432 23333333322
Q ss_pred --CCCccEEEcccCCCC----------CHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCce
Q 015092 255 --TDVDEVIPVSAKYGH----------GVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYA 322 (413)
Q Consensus 255 --~~~~~v~~iSA~~g~----------gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys 322 (413)
..| |++..||+.|. ++..||+.|.+++|.+... .+.|..+.+.. .-+.+.+|..
T Consensus 156 eQLdF-PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~------~d~PlQ~qvt~-------Ldyn~y~GrI 221 (603)
T COG1217 156 EQLDF-PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGD------LDEPLQMQVTQ-------LDYNSYVGRI 221 (603)
T ss_pred hhCCC-cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCC------CCCCeEEEEEe-------ecccccccee
Confidence 233 88999999874 7888999999999865431 12222211111 1235667777
Q ss_pred eEEEEEEEEecCCC
Q 015092 323 CQVNVVSYKTRPTA 336 (413)
Q Consensus 323 ~~v~v~~~~~~~~~ 336 (413)
...+|..++.+++.
T Consensus 222 gigRi~~G~vk~~q 235 (603)
T COG1217 222 GIGRIFRGTVKPNQ 235 (603)
T ss_pred EEEEEecCcccCCC
Confidence 77788888777653
No 232
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.67 E-value=6.7e-16 Score=157.14 Aligned_cols=161 Identities=20% Similarity=0.295 Sum_probs=106.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeee--eCCCCceEEEEEE---------------------------EEe------
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILG---------------------------ICS------ 159 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~v--s~~~~tt~~~~~~---------------------------~~~------ 159 (413)
..+|+++||.++|||||+.+|++.....- ....|.|.+.... .+.
T Consensus 34 ~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (460)
T PTZ00327 34 TINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKM 113 (460)
T ss_pred cEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccc
Confidence 34899999999999999999997542110 0011111110000 000
Q ss_pred CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCC-CchHHHHHHHHccccCCCCCEEEEEecCCC
Q 015092 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (413)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~-~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl 238 (413)
.-..++.|+||||+. .+.+.+...+..+|++++|||+..+ ...++...+..+... .-.|+|+|+||+|+
T Consensus 114 ~~~~~i~~IDtPGH~---------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l-gi~~iIVvlNKiDl 183 (460)
T PTZ00327 114 TLKRHVSFVDCPGHD---------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM-KLKHIIILQNKIDL 183 (460)
T ss_pred cccceEeeeeCCCHH---------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc-CCCcEEEEEecccc
Confidence 002478999999942 2456667778899999999999975 455554444444331 23468999999999
Q ss_pred CChhhHHHHHHHHHh-----cCCCccEEEcccCCCCCHHHHHHHHHhhCCCC
Q 015092 239 IKPGEIAKKLEWYEK-----FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (413)
Q Consensus 239 ~~~~~~~~~~~~~~~-----~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~ 285 (413)
.+.....+....+.. .....+++++||++|.|++.|+++|.+.++.+
T Consensus 184 v~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 184 VKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 865544433333332 12356899999999999999999999877754
No 233
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.67 E-value=2e-15 Score=128.90 Aligned_cols=156 Identities=22% Similarity=0.325 Sum_probs=110.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
|..+|.|+|..|+||||++++|.+.....+++ |.-.....+..+++++++||..| +.. +...+.+++
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~p----t~gf~Iktl~~~~~~L~iwDvGG--q~~-------lr~~W~nYf 81 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISP----TLGFQIKTLEYKGYTLNIWDVGG--QKT-------LRSYWKNYF 81 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCC----ccceeeEEEEecceEEEEEEcCC--cch-------hHHHHHHhh
Confidence 45689999999999999999999987443333 33333444567789999999999 433 344578889
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccccC-CCCCEEEEEecCCCCCh---hhHHHHH--HHHHhcCCCccEEEccc
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKP---GEIAKKL--EWYEKFTDVDEVIPVSA 265 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~---~~~~~~~--~~~~~~~~~~~v~~iSA 265 (413)
..+|++|||+|.++.. +.....+..++...+ .+.|++++.||.|+... +.+.... +.+.+ ..-++++.|||
T Consensus 82 estdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~k-s~~~~l~~cs~ 160 (185)
T KOG0073|consen 82 ESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAK-SHHWRLVKCSA 160 (185)
T ss_pred hccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhcc-ccCceEEEEec
Confidence 9999999999997653 333333444333211 56899999999999733 3333221 12211 22358999999
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 015092 266 KYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 266 ~~g~gv~~L~~~l~~~l~ 283 (413)
.+|+++.+-++||+..+.
T Consensus 161 ~tge~l~~gidWL~~~l~ 178 (185)
T KOG0073|consen 161 VTGEDLLEGIDWLCDDLM 178 (185)
T ss_pred cccccHHHHHHHHHHHHH
Confidence 999999999999887654
No 234
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=3e-16 Score=165.70 Aligned_cols=235 Identities=20% Similarity=0.175 Sum_probs=154.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceee-----e------eC------CCCceEEEEEEEEeCCC-eeEEEEeCCCCch
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----V------TN------KPQTTRHRILGICSGPE-YQMILYDTPGIIE 175 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~-----v------s~------~~~tt~~~~~~~~~~~~-~~~~l~DtpG~~~ 175 (413)
+..+|+|+||.++|||||..+|+.....+ + .+ ..|.|.......+.|.+ +.+++|||||+.+
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 44589999999999999999997443221 1 11 11333333334466775 9999999999887
Q ss_pred hhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhH---HH------
Q 015092 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI---AK------ 246 (413)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~---~~------ 246 (413)
|...+.++++.+|++++|+|+..+...+++.+|+++.. .+.|.++++||+|+...+-. ..
T Consensus 89 ---------Ft~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~--~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~ 157 (697)
T COG0480 89 ---------FTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK--YGVPRILFVNKMDRLGADFYLVVEQLKERLG 157 (697)
T ss_pred ---------cHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh--cCCCeEEEEECccccccChhhhHHHHHHHhC
Confidence 34557777899999999999999999999999998888 89999999999999532100 00
Q ss_pred ------------------------------------------------------------------HHHHHHh-------
Q 015092 247 ------------------------------------------------------------------KLEWYEK------- 253 (413)
Q Consensus 247 ------------------------------------------------------------------~~~~~~~------- 253 (413)
..+.+..
T Consensus 158 ~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~ 237 (697)
T COG0480 158 ANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEE 237 (697)
T ss_pred CCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHH
Confidence 0000000
Q ss_pred -----------cCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCccCC---------c--hhhHHHHHHHHHHH
Q 015092 254 -----------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSE---------H--PERFFVGEIIREKI 311 (413)
Q Consensus 254 -----------~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t~---------~--~~~~~~~eiiReki 311 (413)
...+.|+++-||.++.|+..|++++.+++|.+....+.....+ . .+..+++-++ |+
T Consensus 238 ~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vf--Ki 315 (697)
T COG0480 238 EIKKALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVF--KI 315 (697)
T ss_pred HHHHHHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEE--Ee
Confidence 0125688999999999999999999999986532211000000 0 0111122111 12
Q ss_pred HhhcCCCCCceeEEEEEEEEecCCCeeEEEEEEEEeeCCcceEEeecCChHH
Q 015092 312 FMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKAL 363 (413)
Q Consensus 312 ~~~~~~eipys~~v~v~~~~~~~~~~~~i~~~~~~~r~~~~~i~iG~~g~~i 363 (413)
. ..+.++..+.+++.+|+.+.|..+++......+|.++.+.+.|..-..+
T Consensus 316 ~--~d~~~g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v 365 (697)
T COG0480 316 M--TDPFVGKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEV 365 (697)
T ss_pred E--ecCCCCeEEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeec
Confidence 1 2667788888999999999886666554444444455555544444333
No 235
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.65 E-value=2.7e-16 Score=169.78 Aligned_cols=213 Identities=19% Similarity=0.220 Sum_probs=132.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCC---------------ceEEEEEE----EEeCCCeeEEEEeCCCCc
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ---------------TTRHRILG----ICSGPEYQMILYDTPGII 174 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~---------------tt~~~~~~----~~~~~~~~~~l~DtpG~~ 174 (413)
+-.+|+|+||+++|||||+++|+.....+.....+ .|...... .....+.+++|+||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 44589999999999999999997644322111111 11111111 112347889999999975
Q ss_pred hhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCCh------hhHHH--
Q 015092 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP------GEIAK-- 246 (413)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~------~~~~~-- 246 (413)
+ +...+..++..+|++|+|+|+..+...++..++..+.. .+.|.|+++||+|+... ..+..
T Consensus 99 d---------f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~--~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~ 167 (731)
T PRK07560 99 D---------FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR--ERVKPVLFINKVDRLIKELKLTPQEMQQRL 167 (731)
T ss_pred C---------hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH--cCCCeEEEEECchhhcccccCCHHHHHHHH
Confidence 4 23456677889999999999999988888777776544 46788999999998621 11111
Q ss_pred ---------HHHHHHh--c-------CCCccEEEcccCCCCCHH----------------------------------HH
Q 015092 247 ---------KLEWYEK--F-------TDVDEVIPVSAKYGHGVE----------------------------------DI 274 (413)
Q Consensus 247 ---------~~~~~~~--~-------~~~~~v~~iSA~~g~gv~----------------------------------~L 274 (413)
....+.. . .....+++.||..+.|.. .|
T Consensus 168 ~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~L 247 (731)
T PRK07560 168 LKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVV 247 (731)
T ss_pred HHHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHH
Confidence 1111110 0 111346778999887775 78
Q ss_pred HHHHHhhCCCCCCC--------CCC--C------ccCCchhhHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCCee
Q 015092 275 RDWILTKLPLGPAY--------YPK--D------IVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKD 338 (413)
Q Consensus 275 ~~~l~~~l~~~~~~--------~~~--~------~~t~~~~~~~~~eiiReki~~~~~~eipys~~v~v~~~~~~~~~~~ 338 (413)
++.|..++|.+... +.. . .....+...+++.++ |++ ..+..|..+.+++.+|+.+.|..+
T Consensus 248 ld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~Vf--K~~--~d~~~G~va~~RV~sGtL~~Gd~v 323 (731)
T PRK07560 248 LDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVT--DII--VDPHAGEVATGRVFSGTLRKGQEV 323 (731)
T ss_pred HHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEE--eeE--EcCCCCeEEEEEEEEeEEcCCCEE
Confidence 99999999876421 100 0 000111122222222 111 256678899999999999887666
Q ss_pred EEE
Q 015092 339 FIQ 341 (413)
Q Consensus 339 ~i~ 341 (413)
++.
T Consensus 324 ~~~ 326 (731)
T PRK07560 324 YLV 326 (731)
T ss_pred EEc
Confidence 543
No 236
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.64 E-value=2.1e-15 Score=137.70 Aligned_cols=159 Identities=20% Similarity=0.154 Sum_probs=101.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceee-e---eCCCCceEEEEEEEEe-CCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-V---TNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~-v---s~~~~tt~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
.+|+++|.+|+|||||+|+|++..... . .....+|.... .+. .....+.+|||||+... .......+ +.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~-~~~~~~~l-~~-- 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGST-AFPPDDYL-EE-- 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCcc-cCCHHHHH-HH--
Confidence 479999999999999999999854321 1 11112232211 111 12347899999998532 12222222 21
Q ss_pred hhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhh-------------HHHHHHHHH----h
Q 015092 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-------------IAKKLEWYE----K 253 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~-------------~~~~~~~~~----~ 253 (413)
..+..+|++++|.| .++...+..+++.++. .+.|+++|+||+|+..+.. +....+.+. .
T Consensus 76 ~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~--~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 151 (197)
T cd04104 76 MKFSEYDFFIIISS--TRFSSNDVKLAKAIQC--MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE 151 (197)
T ss_pred hCccCcCEEEEEeC--CCCCHHHHHHHHHHHH--hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence 23678999999865 3466666667776766 5789999999999953211 111111111 1
Q ss_pred c-CCCccEEEcccC--CCCCHHHHHHHHHhhCCC
Q 015092 254 F-TDVDEVIPVSAK--YGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 254 ~-~~~~~v~~iSA~--~g~gv~~L~~~l~~~l~~ 284 (413)
. ....++|.+|+. .+.|+..|.+.|...+++
T Consensus 152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 1 234579999998 689999999999999875
No 237
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.63 E-value=4.4e-15 Score=144.88 Aligned_cols=185 Identities=22% Similarity=0.272 Sum_probs=120.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------CCceeeeeCCCCceE--------------------EEEEEE----------
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTR--------------------HRILGI---------- 157 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~------~~~~~~vs~~~~tt~--------------------~~~~~~---------- 157 (413)
+...|+|.|.||+|||||+++|. +.++..++-.|.+.. ..+...
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a 134 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVA 134 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccchH
Confidence 45589999999999999999863 333443333332221 001110
Q ss_pred ---------EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCC
Q 015092 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (413)
Q Consensus 158 ---------~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p 228 (413)
+...++.++|+||+|..+.... ....||++++|++...+..-+. +..- . -...
T Consensus 135 ~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~------------i~~~aD~vlvv~~p~~gd~iq~--~k~g--i--~E~a 196 (332)
T PRK09435 135 RKTRETMLLCEAAGYDVILVETVGVGQSETA------------VAGMVDFFLLLQLPGAGDELQG--IKKG--I--MELA 196 (332)
T ss_pred HHHHHHHHHHhccCCCEEEEECCCCccchhH------------HHHhCCEEEEEecCCchHHHHH--HHhh--h--hhhh
Confidence 1123567999999998642211 2457999999987433321111 1110 1 1234
Q ss_pred EEEEEecCCCCChhhHHHHHHHHHhc----C-----CCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCccCC---
Q 015092 229 ILLVLNKKDLIKPGEIAKKLEWYEKF----T-----DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSE--- 296 (413)
Q Consensus 229 ~ilV~NK~Dl~~~~~~~~~~~~~~~~----~-----~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t~--- 296 (413)
.++|+||+|+............+... . ...|++++||++|.|+++|++.|.++++ +.++.+..++
T Consensus 197 DIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~---~l~~sg~l~~~r~ 273 (332)
T PRK09435 197 DLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA---ALTASGEFAARRR 273 (332)
T ss_pred heEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH---HhccCChHHHHHH
Confidence 58999999998644333222222211 1 1258999999999999999999999887 6778888887
Q ss_pred chhhHHHHHHHHHHHHhhcCCCC
Q 015092 297 HPERFFVGEIIREKIFMQYRNEV 319 (413)
Q Consensus 297 ~~~~~~~~eiiReki~~~~~~ei 319 (413)
++.++.+.+++|++++..++...
T Consensus 274 ~~~~~~v~elire~l~~~~~~~~ 296 (332)
T PRK09435 274 EQQVDWMWEMVEEGLLDRLFADP 296 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCc
Confidence 78888999999999998776543
No 238
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=2.5e-15 Score=146.41 Aligned_cols=118 Identities=21% Similarity=0.208 Sum_probs=88.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceee---------------eeCCC------CceEEEEEEEEeCCCeeEEEEeCCC
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VTNKP------QTTRHRILGICSGPEYQMILYDTPG 172 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~---------------vs~~~------~tt~~~~~~~~~~~~~~~~l~DtpG 172 (413)
|....+|+.||++|||||..+|+--..++ .|+.. |.......-.+.+.+..++|+||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 34479999999999999999985322111 11111 1111112223567889999999999
Q ss_pred CchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh
Q 015092 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (413)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~ 242 (413)
+.+.+ +.+++.+..+|.+|.|||+..|.++++..+.+.++. +++|++-++||+|+...+
T Consensus 91 HeDFS---------EDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrl--R~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 91 HEDFS---------EDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRL--RDIPIFTFINKLDREGRD 149 (528)
T ss_pred ccccc---------hhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhh--cCCceEEEeeccccccCC
Confidence 75533 345566779999999999999999999999999988 999999999999997543
No 239
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=3.7e-15 Score=125.02 Aligned_cols=154 Identities=21% Similarity=0.230 Sum_probs=106.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceE--EEE--EEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR--HRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~--~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
.+|++||..|||||.|+.+++..-+.. ..+.|. +.. +..+..+..++.+|||+| ++.++.+ ..+
T Consensus 8 fkivlvgnagvgktclvrrftqglfpp---gqgatigvdfmiktvev~gekiklqiwdtag--qerfrsi-------tqs 75 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPP---GQGATIGVDFMIKTVEVNGEKIKLQIWDTAG--QERFRSI-------TQS 75 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCC---CCCceeeeeEEEEEEEECCeEEEEEEeeccc--hHHHHHH-------HHH
Confidence 389999999999999999998766542 222232 222 222445567889999999 6665554 555
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCccEEEcccCCC
Q 015092 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~iSA~~g 268 (413)
+++.|+++|+|+|++..+ .-..+|+.+.-.....+.-.|+|+||+|+.+.+++.. +.+.+.+. ...-++++||+..
T Consensus 76 yyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~-qdmyfletsakea 154 (213)
T KOG0095|consen 76 YYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEA-QDMYFLETSAKEA 154 (213)
T ss_pred HhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHh-hhhhhhhhcccch
Confidence 689999999999998544 3445565544333224566799999999987655543 33344433 2234688999999
Q ss_pred CCHHHHHHHHHhhC
Q 015092 269 HGVEDIRDWILTKL 282 (413)
Q Consensus 269 ~gv~~L~~~l~~~l 282 (413)
.|++.|+..+.-.+
T Consensus 155 ~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 155 DNVEKLFLDLACRL 168 (213)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999998877554
No 240
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.62 E-value=4.2e-15 Score=124.59 Aligned_cols=153 Identities=20% Similarity=0.270 Sum_probs=107.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCce-EEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt-~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+.+|+|.||||||+|+-++....++ .++..|+ .+..... +.++...+.+|||+| ++.+..+ ...++
T Consensus 10 kllIigDsgVGKssLl~rF~ddtFs--~sYitTiGvDfkirTv~i~G~~VkLqIwDtAG--qErFrti-------tstyy 78 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDTFS--GSYITTIGVDFKIRTVDINGDRVKLQIWDTAG--QERFRTI-------TSTYY 78 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhcccc--cceEEEeeeeEEEEEeecCCcEEEEEEeeccc--HHHHHHH-------HHHHc
Confidence 5789999999999999999887665 2232222 2222222 445567899999999 5555443 45568
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
+..+++++|+|.+++. .....|+.+. +......|-++|+||.|....+.+. .....+....+ ..+|++||+..+|
T Consensus 79 rgthgv~vVYDVTn~ESF~Nv~rWLeei-~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mg-ie~FETSaKe~~N 156 (198)
T KOG0079|consen 79 RGTHGVIVVYDVTNGESFNNVKRWLEEI-RNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMG-IELFETSAKENEN 156 (198)
T ss_pred cCCceEEEEEECcchhhhHhHHHHHHHH-HhcCccccceecccCCCCccceeeehHHHHHHHHhcC-chheehhhhhccc
Confidence 9999999999999875 3455666554 3333678999999999997654332 22223333334 3789999999999
Q ss_pred HHHHHHHHHhhC
Q 015092 271 VEDIRDWILTKL 282 (413)
Q Consensus 271 v~~L~~~l~~~l 282 (413)
++..+.-|.+..
T Consensus 157 vE~mF~cit~qv 168 (198)
T KOG0079|consen 157 VEAMFHCITKQV 168 (198)
T ss_pred chHHHHHHHHHH
Confidence 999998887654
No 241
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.62 E-value=7.3e-16 Score=152.91 Aligned_cols=154 Identities=19% Similarity=0.172 Sum_probs=91.2
Q ss_pred Cccccccchhh--hhhcCceEEeechhhhchhccchhhhhhhhHHHhhhhhccccccCCCCCCCCCcCCccccccccCCC
Q 015092 13 SLFPHYSTLTA--YREIKFGFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSNQREMDLDDGDEMEFDDASSFLSLSEKP 90 (413)
Q Consensus 13 ~~~~~~~~~~~--~~~~~i~~~f~sa~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 90 (413)
-|+||.+-+|| |.++||.|.||||.+|.+..+.+...++-..-+....... .-+..++|.. ..+....+ ...
T Consensus 217 Ll~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~---~~~~~~~d~~-i~r~~~d~--~e~ 290 (562)
T KOG1424|consen 217 LLPPEQRVAWAEYFRQNNIPVVFFSALAATEQLESKVLKEDRRSLDGVSRALG---AIFVGEVDLK-IARDKGDG--EEI 290 (562)
T ss_pred cCCHHHHHHHHHHHHhcCceEEEEecccccccccccchhhhhhcccchhhhcc---ccccccchhh-hhhhcccc--cch
Confidence 58999999997 9999999999999987776655322111111111111111 0111111100 00000000 000
Q ss_pred CcCCCCCCchhhh-ccc-cCCCCCCCc-cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEE
Q 015092 91 DRNMASPDDYEIE-EFD-YASHPNHKS-GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMIL 167 (413)
Q Consensus 91 ~~~~~~~~~~~~~-~~~-~~~~~~~~~-~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l 167 (413)
.. +...... ... ....+..+. ..|++||.|||||||+||+|.|.+...||.+||.|++..+-.++ ..+.|
T Consensus 291 ~~----v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls---~~v~L 363 (562)
T KOG1424|consen 291 ED----VEQLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS---PSVCL 363 (562)
T ss_pred hh----HHhhhhhhccccCCCCcCCCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC---CCcee
Confidence 00 0000000 000 011122233 48999999999999999999999999999999999999887766 56899
Q ss_pred EeCCCCchhhhh
Q 015092 168 YDTPGIIEKKIH 179 (413)
Q Consensus 168 ~DtpG~~~~~~~ 179 (413)
+||||++-.++.
T Consensus 364 CDCPGLVfPSf~ 375 (562)
T KOG1424|consen 364 CDCPGLVFPSFS 375 (562)
T ss_pred cCCCCccccCCC
Confidence 999999865544
No 242
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.61 E-value=5.4e-15 Score=150.77 Aligned_cols=147 Identities=21% Similarity=0.241 Sum_probs=97.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCcee------------------------eeeC------CCCceEEEEEEEEeCCCee
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLS------------------------IVTN------KPQTTRHRILGICSGPEYQ 164 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~------------------------~vs~------~~~tt~~~~~~~~~~~~~~ 164 (413)
..+|+++||.++|||||+.+|+..... .+.+ ..+.|.+.....+.+++..
T Consensus 7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~ 86 (447)
T PLN00043 7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYY 86 (447)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEE
Confidence 347999999999999999998642211 0111 2244555444556677889
Q ss_pred EEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCC-c------hHHHHHHHHccccCCCCC-EEEEEecC
Q 015092 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-E------RIDEILEEGVGDHKDKLP-ILLVLNKK 236 (413)
Q Consensus 165 ~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~-~------~~~~~l~~~l~~~~~~~p-~ilV~NK~ 236 (413)
++++||||+.+ +...+..++..+|++|+|+|+..+. + .+....+.+++. .+.| +|+++||+
T Consensus 87 i~liDtPGh~d---------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~--~gi~~iIV~vNKm 155 (447)
T PLN00043 87 CTVIDAPGHRD---------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT--LGVKQMICCCNKM 155 (447)
T ss_pred EEEEECCCHHH---------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH--cCCCcEEEEEEcc
Confidence 99999999532 4455667788999999999999763 1 455555555544 5664 68899999
Q ss_pred CCCCh----hhHHH----HHHHHHhcC---CCccEEEcccCCCCCHH
Q 015092 237 DLIKP----GEIAK----KLEWYEKFT---DVDEVIPVSAKYGHGVE 272 (413)
Q Consensus 237 Dl~~~----~~~~~----~~~~~~~~~---~~~~v~~iSA~~g~gv~ 272 (413)
|+... ....+ ....+.... ...+++++||++|.|+.
T Consensus 156 D~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 156 DATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 98621 11222 222222221 12578999999999985
No 243
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.1e-14 Score=122.78 Aligned_cols=153 Identities=20% Similarity=0.200 Sum_probs=106.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceee-eeCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~-vs~~~~tt~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
.++.++|..|+|||.|+.+++.+++.. ++.+.|... ...++. .+..++.+|||+| ++.++. -++++
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveF--gSrIinVGgK~vKLQIWDTAG--QErFRS-------VtRsY 78 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEF--GSRIVNVGGKTVKLQIWDTAG--QERFRS-------VTRSY 78 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeee--cceeeeecCcEEEEEEeeccc--HHHHHH-------HHHHH
Confidence 378999999999999999999888753 223333222 122333 3446789999999 555443 47778
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHH-HHHHHhcCCCccEEEcccCCCC
Q 015092 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~-~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
++.|-.+++|+|+++.. .....|+........+++-+++++||-|+...+++.-. ...+...... ...++||++|+
T Consensus 79 YRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel-~flETSa~TGe 157 (214)
T KOG0086|consen 79 YRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENEL-MFLETSALTGE 157 (214)
T ss_pred hccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccce-eeeeecccccc
Confidence 99999999999998653 55666665543333367888999999999876655422 2233332222 56899999999
Q ss_pred CHHHHHHHHHh
Q 015092 270 GVEDIRDWILT 280 (413)
Q Consensus 270 gv~~L~~~l~~ 280 (413)
|+++.+-....
T Consensus 158 NVEEaFl~c~~ 168 (214)
T KOG0086|consen 158 NVEEAFLKCAR 168 (214)
T ss_pred cHHHHHHHHHH
Confidence 99998765544
No 244
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.60 E-value=1.7e-14 Score=132.34 Aligned_cols=115 Identities=26% Similarity=0.349 Sum_probs=73.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+.|+++|++|||||||+++|....+.. ..+.++......... ..+..+.+|||||+. .. ...+..++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~--t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~--~~-------~~~~~~~~ 69 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRS--TVTSIEPNVATFILNSEGKGKKFRLVDVPGHP--KL-------RDKLLETL 69 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCC--ccCcEeecceEEEeecCCCCceEEEEECCCCH--HH-------HHHHHHHH
Confidence 379999999999999999999876532 122222111111111 235789999999953 22 22334456
Q ss_pred ccc-cEEEEEeeCCCCCch---HHHHHHHHccc---cCCCCCEEEEEecCCCCCh
Q 015092 194 INA-DCIVVLVDACKAPER---IDEILEEGVGD---HKDKLPILLVLNKKDLIKP 241 (413)
Q Consensus 194 ~~a-D~vl~VvD~~~~~~~---~~~~l~~~l~~---~~~~~p~ilV~NK~Dl~~~ 241 (413)
..+ +++|||+|+...... ...++...+.. ...+.|+++|+||+|+...
T Consensus 70 ~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 70 KNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred hccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 777 999999999875322 22333332221 1257999999999998643
No 245
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=8.2e-15 Score=128.21 Aligned_cols=159 Identities=19% Similarity=0.235 Sum_probs=115.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015092 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
..+..+|.++|--|+||||++++|-..+...+.++.| .....+.+.+..+.+||..| +.+.+.+ +..
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiG----fnVE~v~ykn~~f~vWDvGG--q~k~R~l-------W~~ 80 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIG----FNVETVEYKNISFTVWDVGG--QEKLRPL-------WKH 80 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccCCCccc----cceeEEEEcceEEEEEecCC--Ccccccc-------hhh
Confidence 3456699999999999999999997777653333333 23334556689999999999 4443333 677
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHccccC-CCCCEEEEEecCCCCChhh---HHHHHHHHHhcCCCccEEEccc
Q 015092 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVSA 265 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~v~~iSA 265 (413)
++.+.+++|||||+++.. .+..+++...+.... ...|++++.||.|+...-. +...+....-......+..++|
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 799999999999998754 445556666666533 5799999999999975433 3333332222223457899999
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 015092 266 KYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 266 ~~g~gv~~L~~~l~~~l~ 283 (413)
.+|.|+.+-+++|.+.+.
T Consensus 161 ~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred cccccHHHHHHHHHHHHh
Confidence 999999999999988775
No 246
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.2e-14 Score=121.69 Aligned_cols=155 Identities=14% Similarity=0.203 Sum_probs=105.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCce--EEEEEEEEeC-CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT--RHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt--~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
++.|+|...+|||||+-+.++..+.+ ....|. ......++.. ....+.+|||+| ++..+.+ .-.++
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~--afvsTvGidFKvKTvyr~~kRiklQiwDTag--qEryrti-------TTayy 91 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTS--AFVSTVGIDFKVKTVYRSDKRIKLQIWDTAG--QERYRTI-------TTAYY 91 (193)
T ss_pred eEEEEccCCccchhhhHHhhcccccc--ceeeeeeeeEEEeEeeecccEEEEEEEeccc--chhhhHH-------HHHHh
Confidence 89999999999999999999887653 111111 1122233322 346789999999 4443333 44558
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
+.|+++|+++|+++.. .....|....-.-...+.|+|+|+||||+.+.+.+. +....+....++ .+|++||+.+.|
T Consensus 92 RgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf-efFEtSaK~Nin 170 (193)
T KOG0093|consen 92 RGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF-EFFETSAKENIN 170 (193)
T ss_pred hccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhCh-HHhhhccccccc
Confidence 9999999999998753 333344333221122689999999999998655432 222334444455 789999999999
Q ss_pred HHHHHHHHHhhCC
Q 015092 271 VEDIRDWILTKLP 283 (413)
Q Consensus 271 v~~L~~~l~~~l~ 283 (413)
+.+++..++..+-
T Consensus 171 Vk~~Fe~lv~~Ic 183 (193)
T KOG0093|consen 171 VKQVFERLVDIIC 183 (193)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 247
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.60 E-value=7.3e-15 Score=123.10 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=110.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
.+.++|-.++|||||+|.+....+. .....|+-....-++.+...+.+||.|| +..+..+ +..+++.+
T Consensus 22 el~lvGLq~sGKtt~Vn~ia~g~~~---edmiptvGfnmrk~tkgnvtiklwD~gG--q~rfrsm-------WerycR~v 89 (186)
T KOG0075|consen 22 ELSLVGLQNSGKTTLVNVIARGQYL---EDMIPTVGFNMRKVTKGNVTIKLWDLGG--QPRFRSM-------WERYCRGV 89 (186)
T ss_pred eEEEEeeccCCcceEEEEEeeccch---hhhcccccceeEEeccCceEEEEEecCC--CccHHHH-------HHHHhhcC
Confidence 6899999999999999988764442 2333344444444566778999999999 4444444 55568999
Q ss_pred cEEEEEeeCCCCC--chHHHHHHHHccccC-CCCCEEEEEecCCCCChhhHHHHHHHHHhcC---CCccEEEcccCCCCC
Q 015092 197 DCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFT---DVDEVIPVSAKYGHG 270 (413)
Q Consensus 197 D~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~---~~~~v~~iSA~~g~g 270 (413)
++++||||+.++. +....++..++.... .++|+++++||.|+..+-.-......+.... .-..+|.+||+...|
T Consensus 90 ~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~N 169 (186)
T KOG0075|consen 90 SAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVN 169 (186)
T ss_pred cEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCcc
Confidence 9999999998753 344556666665532 6799999999999976533333333332111 113579999999999
Q ss_pred HHHHHHHHHhhCC
Q 015092 271 VEDIRDWILTKLP 283 (413)
Q Consensus 271 v~~L~~~l~~~l~ 283 (413)
++.+++||.++..
T Consensus 170 id~~~~Wli~hsk 182 (186)
T KOG0075|consen 170 IDITLDWLIEHSK 182 (186)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998754
No 248
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.59 E-value=1.2e-15 Score=129.31 Aligned_cols=155 Identities=19% Similarity=0.245 Sum_probs=110.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceE----EEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR----HRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~----~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
.+++++|..=||||||+-+++..++.. +.-+|. ......+.....++.+|||+| ++.++.+...
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~EnkFn~---kHlsTlQASF~~kk~n~ed~ra~L~IWDTAG--QErfHALGPI------- 81 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENKFNC---KHLSTLQASFQNKKVNVEDCRADLHIWDTAG--QERFHALGPI------- 81 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhhcch---hhHHHHHHHHhhcccccccceeeeeeeeccc--hHhhhccCce-------
Confidence 489999999999999999998887642 111110 000111222346799999999 6777776544
Q ss_pred hcccccEEEEEeeCCCC--CchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCccEEEcccCCC
Q 015092 192 AGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~--~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~iSA~~g 268 (413)
+++.++.+|+|+|+++. ++....|+.++.......+.+++|+||+|+...+.+.. ....+.+.-+ ..++.+||+.+
T Consensus 82 YYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvG-A~y~eTSAk~N 160 (218)
T KOG0088|consen 82 YYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVG-ALYMETSAKDN 160 (218)
T ss_pred EEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhc-hhheecccccc
Confidence 48999999999999865 35667788777666556788999999999976554432 2223333222 46899999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015092 269 HGVEDIRDWILTKLP 283 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~ 283 (413)
.||.+||..|...+-
T Consensus 161 ~Gi~elFe~Lt~~Mi 175 (218)
T KOG0088|consen 161 VGISELFESLTAKMI 175 (218)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999887654
No 249
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.58 E-value=1.6e-15 Score=163.35 Aligned_cols=116 Identities=22% Similarity=0.239 Sum_probs=82.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceee---------eeCC------CCceEEEE----EEEEeCCCeeEEEEeCCCCc
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------VTNK------PQTTRHRI----LGICSGPEYQMILYDTPGII 174 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~---------vs~~------~~tt~~~~----~~~~~~~~~~~~l~DtpG~~ 174 (413)
+..+|+|+|+.++|||||+++|+.....+ ..+. .+.|.... ...+.+.+.++++|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 34589999999999999999997531110 0111 22232211 11245678899999999974
Q ss_pred hhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCC
Q 015092 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (413)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~ 240 (413)
+ +...+..++..+|++|+|+|+..+....+..++..+.. .+.|.++|+||+|+..
T Consensus 98 ~---------f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 D---------FGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred c---------cHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHH--cCCCEEEEEEChhccc
Confidence 3 22345667899999999999999887777777766545 5789999999999863
No 250
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=9.5e-14 Score=121.43 Aligned_cols=158 Identities=24% Similarity=0.270 Sum_probs=115.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeee-------eCCC--CceEEEEEEEEeCCC-eeEEEEeCCCCchhhhhhHH
Q 015092 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIV-------TNKP--QTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLD 182 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~v-------s~~~--~tt~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~l~ 182 (413)
.+..+|++.|..++||||++.++......++ +... .||.-.-.+.+...+ ..+.++|||| |.++..+
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPG--q~RF~fm- 84 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPG--QERFKFM- 84 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCC--cHHHHHH-
Confidence 3556999999999999999999987764322 1111 244444444455444 8999999999 4444433
Q ss_pred HHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCC-CCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEE
Q 015092 183 SMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVI 261 (413)
Q Consensus 183 ~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~-~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~ 261 (413)
+.-.++.++.+|+++|++.+.......+.+.+.. .+ .|+++++||.|+.+....+.+.+.+....--.+++
T Consensus 85 ------~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~--~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi 156 (187)
T COG2229 85 ------WEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTS--RNPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVI 156 (187)
T ss_pred ------HHHHhCCcceEEEEEecCCCcchHHHHHHHHHhh--ccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCcee
Confidence 3344788999999999998876655666666665 44 99999999999987665555555555432235899
Q ss_pred EcccCCCCCHHHHHHHHHhh
Q 015092 262 PVSAKYGHGVEDIRDWILTK 281 (413)
Q Consensus 262 ~iSA~~g~gv~~L~~~l~~~ 281 (413)
+++|..+.|+.+.++.+...
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeecccchhHHHHHHHHHhh
Confidence 99999999999999988776
No 251
>PTZ00258 GTP-binding protein; Provisional
Probab=99.57 E-value=3.5e-14 Score=141.01 Aligned_cols=90 Identities=24% Similarity=0.228 Sum_probs=72.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC-----------------eeEEEEeCCCCchh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEK 176 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~ 176 (413)
...+|+|||.||||||||+|+|++... .++++|+||+++..+.+...+ .++.++||||+...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 445899999999999999999988775 689999999999998877652 35999999999743
Q ss_pred hhhhHHHHHHHHHHhhcccccEEEEEeeCC
Q 015092 177 KIHMLDSMMMKNVRSAGINADCIVVLVDAC 206 (413)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~ 206 (413)
... ...+...+...++.||++++|||+.
T Consensus 99 a~~--g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASE--GEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred Ccc--hhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 211 2334456667789999999999984
No 252
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.56 E-value=4.2e-14 Score=128.73 Aligned_cols=158 Identities=21% Similarity=0.246 Sum_probs=106.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|||||+|+.++++..+. ..+.+|.-+..... +..+...+.++||+| +..+..+.. .
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~--~~y~ptied~y~k~~~v~~~~~~l~ilDt~g--~~~~~~~~~-------~ 70 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFV--EDYDPTIEDSYRKELTVDGEVCMLEILDTAG--QEEFSAMRD-------L 70 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccc--cccCCCccccceEEEEECCEEEEEEEEcCCC--cccChHHHH-------H
Confidence 3458999999999999999999998875 44444443433333 344456788999999 334444333 2
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHccccC-CCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCccEEEcccCC
Q 015092 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v~~iSA~~ 267 (413)
++..+|+.++|+++++.. +........+++... ...|+++|+||+|+.....+.. ....+..... ++++++||+.
T Consensus 71 ~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~-~~f~E~Sak~ 149 (196)
T KOG0395|consen 71 YIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWG-CAFIETSAKL 149 (196)
T ss_pred hhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcC-CcEEEeeccC
Confidence 377889999999988754 222222222222211 4579999999999976433321 1222333333 4699999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 015092 268 GHGVEDIRDWILTKLP 283 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~ 283 (413)
+.+++++|..|...+.
T Consensus 150 ~~~v~~~F~~L~r~~~ 165 (196)
T KOG0395|consen 150 NYNVDEVFYELVREIR 165 (196)
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999988654
No 253
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.56 E-value=9.4e-14 Score=129.47 Aligned_cols=135 Identities=20% Similarity=0.243 Sum_probs=92.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc-eeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~-~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
..|+++|++|+|||||+|.|++.. ...+....++ ..+....+.+++++||||.. ..+...+.
T Consensus 40 ~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-----i~i~~~~~~~i~~vDtPg~~------------~~~l~~ak 102 (225)
T cd01882 40 LVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-----ITVVTGKKRRLTFIECPNDI------------NAMIDIAK 102 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-----EEEEecCCceEEEEeCCchH------------HHHHHHHH
Confidence 479999999999999999998752 2222222232 12334467899999999942 12233457
Q ss_pred cccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEE-EEEecCCCCChh-hHHHHHHH-----HHhcCCCccEEEcccCC
Q 015092 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPG-EIAKKLEW-----YEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~i-lV~NK~Dl~~~~-~~~~~~~~-----~~~~~~~~~v~~iSA~~ 267 (413)
.+|++++|+|++.+....+..++..++. .+.|.+ +|+||+|+.... ........ ......+.+++++||++
T Consensus 103 ~aDvVllviDa~~~~~~~~~~i~~~l~~--~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~ 180 (225)
T cd01882 103 VADLVLLLIDASFGFEMETFEFLNILQV--HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIV 180 (225)
T ss_pred hcCEEEEEEecCcCCCHHHHHHHHHHHH--cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeecc
Confidence 8999999999998887777777777766 567854 599999997432 22222211 22234567999999998
Q ss_pred CC
Q 015092 268 GH 269 (413)
Q Consensus 268 g~ 269 (413)
..
T Consensus 181 ~~ 182 (225)
T cd01882 181 HG 182 (225)
T ss_pred CC
Confidence 73
No 254
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.3e-13 Score=134.39 Aligned_cols=149 Identities=20% Similarity=0.237 Sum_probs=100.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCc------------------------eeeeeCCC------CceEEEEEEEEeCCCee
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQK------------------------LSIVTNKP------QTTRHRILGICSGPEYQ 164 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~------------------------~~~vs~~~------~tt~~~~~~~~~~~~~~ 164 (413)
..+++++||+++|||||+-+|+... ++-+.+.. |.|.+.....+..+...
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~ 86 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYN 86 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCce
Confidence 3489999999999999999985322 22233332 44444444456666778
Q ss_pred EEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCC-------CchHHHHHHHHccccCCCCCEEEEEecCC
Q 015092 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKLPILLVLNKKD 237 (413)
Q Consensus 165 ~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~-------~~~~~~~l~~~l~~~~~~~p~ilV~NK~D 237 (413)
+.++||||+.+ |...+......||++|||||++.+ ...++.+..-+.+.+ .-..+|+++||||
T Consensus 87 ~tIiDaPGHrd---------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-Gi~~lIVavNKMD 156 (428)
T COG5256 87 FTIIDAPGHRD---------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-GIKQLIVAVNKMD 156 (428)
T ss_pred EEEeeCCchHH---------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-CCceEEEEEEccc
Confidence 99999999533 445566667899999999999987 455555555444442 2356889999999
Q ss_pred CCCh--hhHHHH---HHHHHhcCCC----ccEEEcccCCCCCHHH
Q 015092 238 LIKP--GEIAKK---LEWYEKFTDV----DEVIPVSAKYGHGVED 273 (413)
Q Consensus 238 l~~~--~~~~~~---~~~~~~~~~~----~~v~~iSA~~g~gv~~ 273 (413)
..+- +...+. ...+.+..++ .+++|+||.+|.|+.+
T Consensus 157 ~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 157 LVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 9852 222222 2223332232 4689999999999865
No 255
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.53 E-value=1.5e-14 Score=142.94 Aligned_cols=172 Identities=20% Similarity=0.219 Sum_probs=121.0
Q ss_pred cccCCCCCCCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHH
Q 015092 105 FDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSM 184 (413)
Q Consensus 105 ~~~~~~~~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~ 184 (413)
++..+..+...+.++++|.||||||||+|.++..... +.+++.||+....+.+.+.-..+.++||||+.+.+....+..
T Consensus 158 l~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradve-vqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~I 236 (620)
T KOG1490|consen 158 LSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDE-VQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNII 236 (620)
T ss_pred HhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccc-cCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHH
Confidence 3445555667779999999999999999999887765 789999999988888887778899999999988655444333
Q ss_pred HHHHHHhhcccccEEEEEeeCCCCCch---HHHHHHHHccccCCCCCEEEEEecCCCCChhhHH----HHHHHHHhcCCC
Q 015092 185 MMKNVRSAGINADCIVVLVDACKAPER---IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA----KKLEWYEKFTDV 257 (413)
Q Consensus 185 ~~~~~~~~~~~aD~vl~VvD~~~~~~~---~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~----~~~~~~~~~~~~ 257 (413)
.+..+-...+.--+|||+.|.+..+.. ..-.+..-++....++|+|+|+||+|+..++++. +..+.+.... .
T Consensus 237 EmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~-~ 315 (620)
T KOG1490|consen 237 EMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDG-N 315 (620)
T ss_pred HHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhcc-C
Confidence 333332223344578999998865421 1122333344444789999999999998765543 2333344333 3
Q ss_pred ccEEEcccCCCCCHHHHHHHH
Q 015092 258 DEVIPVSAKYGHGVEDIRDWI 278 (413)
Q Consensus 258 ~~v~~iSA~~g~gv~~L~~~l 278 (413)
.+++.+|+.+.+|+-++...-
T Consensus 316 v~v~~tS~~~eegVm~Vrt~A 336 (620)
T KOG1490|consen 316 VKVVQTSCVQEEGVMDVRTTA 336 (620)
T ss_pred ceEEEecccchhceeeHHHHH
Confidence 589999999999998755433
No 256
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=2.1e-14 Score=144.72 Aligned_cols=236 Identities=17% Similarity=0.118 Sum_probs=157.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceee-----ee------------CCCCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----VT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~-----vs------------~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (413)
+-.+|+|+-|-.+||||+.++++.....+ +. ...+.|....-..+.|.++.+++|||||+.+.
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 34489999999999999999986543221 10 11123333333346788899999999998875
Q ss_pred hhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHH----
Q 015092 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE---- 252 (413)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---- 252 (413)
... +.++++.-|.+++|+|+..+.+.++...+..++. .+.|.|..+||+|+..............
T Consensus 118 T~E---------VeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r--y~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~ 186 (721)
T KOG0465|consen 118 TFE---------VERALRVLDGAVLVLDAVAGVESQTETVWRQMKR--YNVPRICFINKMDRMGASPFRTLNQIRTKLNH 186 (721)
T ss_pred EEE---------ehhhhhhccCeEEEEEcccceehhhHHHHHHHHh--cCCCeEEEEehhhhcCCChHHHHHHHHhhcCC
Confidence 543 4556788999999999999999999999998888 8999999999999964432111000000
Q ss_pred --------------------------------------------------------------------------------
Q 015092 253 -------------------------------------------------------------------------------- 252 (413)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (413)
T Consensus 187 ~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~ 266 (721)
T KOG0465|consen 187 KPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSA 266 (721)
T ss_pred chheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCH
Confidence
Q ss_pred -----------hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCcc--CCc---------hh-hHHHHHHHHH
Q 015092 253 -----------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIV--SEH---------PE-RFFVGEIIRE 309 (413)
Q Consensus 253 -----------~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~--t~~---------~~-~~~~~eiiRe 309 (413)
-...|.|+++-||..+.||+.|++++++++|.+...+..... ++. ++ +++++-
T Consensus 267 ~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~L---- 342 (721)
T KOG0465|consen 267 QQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVAL---- 342 (721)
T ss_pred HHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeee----
Confidence 023478999999999999999999999999965432222111 111 11 122321
Q ss_pred HHHhhcCCCCCceeEEEEEEEEecCCCeeEEEEEEEEeeCCcceEEeecCChHHHH
Q 015092 310 KIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKALKL 365 (413)
Q Consensus 310 ki~~~~~~eipys~~v~v~~~~~~~~~~~~i~~~~~~~r~~~~~i~iG~~g~~ik~ 365 (413)
.|..-....|..+.++|..|+.+.|..+++..+....|.+....+--...+.|..
T Consensus 343 -AFKle~g~fGqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~ 397 (721)
T KOG0465|consen 343 -AFKLEEGRFGQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNE 397 (721)
T ss_pred -EEEeeecCccceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhh
Confidence 2233344558999999999999988777776555444444444444444444433
No 257
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.53 E-value=5.5e-14 Score=119.87 Aligned_cols=156 Identities=21% Similarity=0.326 Sum_probs=109.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEE---EEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH---RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~---~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
.++.++|.+-||||||+..++..+++..++.. .-.+ +...+-.+...++.+|||+| ++.++.+ .+++
T Consensus 9 frlivigdstvgkssll~~ft~gkfaelsdpt-vgvdffarlie~~pg~riklqlwdtag--qerfrsi-------tksy 78 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSDPT-VGVDFFARLIELRPGYRIKLQLWDTAG--QERFRSI-------TKSY 78 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccCCCc-cchHHHHHHHhcCCCcEEEEEEeeccc--hHHHHHH-------HHHH
Confidence 47889999999999999999998887555321 1111 11122233446789999999 5665544 6677
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHccccC-CC-CCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCC
Q 015092 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DK-LPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~-~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
++++-.+++|+|+++.. +....|+.+...... +. .-+.+|+.|+|+...+.+. +..+.+.+..+. .++++||++
T Consensus 79 yrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM-~FVETSak~ 157 (213)
T KOG0091|consen 79 YRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGM-AFVETSAKN 157 (213)
T ss_pred hhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCc-eEEEecccC
Confidence 99999999999998754 556667665443322 33 4467899999998665543 233445544443 689999999
Q ss_pred CCCHHHHHHHHHhhC
Q 015092 268 GHGVEDIRDWILTKL 282 (413)
Q Consensus 268 g~gv~~L~~~l~~~l 282 (413)
|.||++-++.|.+.+
T Consensus 158 g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 158 GCNVEEAFDMLAQEI 172 (213)
T ss_pred CCcHHHHHHHHHHHH
Confidence 999999998887654
No 258
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.52 E-value=2.8e-13 Score=124.10 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=75.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceE-EEEEEEEe-------CCCeeEEEEeCCCCchhhhhhHHHHHHHH
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILGICS-------GPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~-~~~~~~~~-------~~~~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (413)
+|+++|.++||||||++++++..+.. ....|.. ......+. .....+.+|||+| ++.+..+
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~--~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG--~e~~~~l------- 70 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLG--RPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGG--SESVKST------- 70 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC--CCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCC--chhHHHH-------
Confidence 79999999999999999999887642 2222221 11111112 1335789999999 4444433
Q ss_pred HHhhcccccEEEEEeeCCCCC--chHHHHHHHHccc-------------------cCCCCCEEEEEecCCCCCh
Q 015092 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGD-------------------HKDKLPILLVLNKKDLIKP 241 (413)
Q Consensus 189 ~~~~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~-------------------~~~~~p~ilV~NK~Dl~~~ 241 (413)
...+++.+|++|+|+|.++.. .....|+.+.... ...+.|++||+||+|+.+.
T Consensus 71 ~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 71 RAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred HHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 333488999999999998764 3344554444321 1146899999999999654
No 259
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.52 E-value=3.7e-13 Score=124.31 Aligned_cols=159 Identities=25% Similarity=0.264 Sum_probs=101.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC-CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
.+|+++|.+|||||||+++|.+..+..................... ...+.+|||+|. ..++.+ +..++.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq--~~~~~~-------~~~y~~ 76 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ--EEYRSL-------RPEYYR 76 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCH--HHHHHH-------HHHHhc
Confidence 5899999999999999999999887632222212222222222222 467999999994 443333 445578
Q ss_pred cccEEEEEeeCCCCC--chHHHHHHHHccccC-CCCCEEEEEecCCCCChhhHHHH-------------HHHH-Hhc-CC
Q 015092 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKK-------------LEWY-EKF-TD 256 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~-------------~~~~-~~~-~~ 256 (413)
.++++++|+|..... ......+...++... ...|+++|+||+|+......... .... ... ..
T Consensus 77 ~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (219)
T COG1100 77 GANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVA 156 (219)
T ss_pred CCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhc
Confidence 999999999987532 333333333333322 36899999999999865321110 0000 001 01
Q ss_pred CccEEEcccC--CCCCHHHHHHHHHhhCC
Q 015092 257 VDEVIPVSAK--YGHGVEDIRDWILTKLP 283 (413)
Q Consensus 257 ~~~v~~iSA~--~g~gv~~L~~~l~~~l~ 283 (413)
...++.+||+ ++.|+.+++..+...+.
T Consensus 157 ~~~~~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 157 NPALLETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred ccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence 2238999999 99999999999887764
No 260
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=5.6e-14 Score=121.19 Aligned_cols=161 Identities=24% Similarity=0.295 Sum_probs=110.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCcee----eeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLS----IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~----~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
..|.|+|.-|+|||||+.++-..... ..-.+..+|.-...+.+..++..+.|||..| ++...++ +..
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgG--Qe~lrSl-------w~~ 88 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGG--QESLRSL-------WKK 88 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCC--hHHHHHH-------HHH
Confidence 36999999999999999987433221 1112334454555566666678999999999 5444433 556
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHccc-cCCCCCEEEEEecCCCCChhhHHHHHHHHH--hc--CCCccEEEcc
Q 015092 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYE--KF--TDVDEVIPVS 264 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~--~~~~~v~~iS 264 (413)
++..|+++++|||++++. +.....+...... ...+.|+++.+||.|+.+..+..+....+. .. ..-.++.|+|
T Consensus 89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvS 168 (197)
T KOG0076|consen 89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVS 168 (197)
T ss_pred HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccch
Confidence 688999999999998753 2222222222211 116899999999999987655544433333 11 1235789999
Q ss_pred cCCCCCHHHHHHHHHhhCCCC
Q 015092 265 AKYGHGVEDIRDWILTKLPLG 285 (413)
Q Consensus 265 A~~g~gv~~L~~~l~~~l~~~ 285 (413)
|.+|+||++-..|++..++.+
T Consensus 169 al~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 169 ALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhcccHHHHHHHHHHHHhhc
Confidence 999999999999999988765
No 261
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.50 E-value=5.2e-13 Score=146.37 Aligned_cols=150 Identities=22% Similarity=0.215 Sum_probs=100.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC------------------CeeEEEEeCCCCchhhh
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP------------------EYQMILYDTPGIIEKKI 178 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~------------------~~~~~l~DtpG~~~~~~ 178 (413)
--+|++ +||||+++|.+.+++. ....|-|.+.....+... -..+.||||||+ ..+
T Consensus 467 ~~~~~~----~KTtLLD~iR~t~v~~-~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGh--e~F 539 (1049)
T PRK14845 467 ANGILV----HNTTLLDKIRKTRVAK-KEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGH--EAF 539 (1049)
T ss_pred eeeeec----ccccHHHHHhCCCccc-ccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCc--HHH
Confidence 345554 4999999999998753 333444444333222211 124899999994 444
Q ss_pred hhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhh--------------H
Q 015092 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--------------I 244 (413)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~--------------~ 244 (413)
..+. ...+..+|++++|+|++++...++......++. .+.|+++|+||+|+..... .
T Consensus 540 ~~lr-------~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~--~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~ 610 (1049)
T PRK14845 540 TSLR-------KRGGSLADLAVLVVDINEGFKPQTIEAINILRQ--YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQD 610 (1049)
T ss_pred HHHH-------HhhcccCCEEEEEEECcccCCHhHHHHHHHHHH--cCCCEEEEEECCCCccccccccchhhhhhhhhhH
Confidence 4332 234678999999999998887777777776666 6789999999999963211 0
Q ss_pred HHHHH-----------HH-------------HhcCCCccEEEcccCCCCCHHHHHHHHHhhC
Q 015092 245 AKKLE-----------WY-------------EKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 245 ~~~~~-----------~~-------------~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
..... .+ ..+.+..+++++||++|.|+++|+.+|....
T Consensus 611 ~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 611 QHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 00000 01 1223456899999999999999999887544
No 262
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.50 E-value=4e-13 Score=126.73 Aligned_cols=128 Identities=19% Similarity=0.233 Sum_probs=88.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh-hhHHHHHHHHHHhh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDSMMMKNVRSA 192 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~l~~~~~~~~~~~ 192 (413)
...+|+++|.+|||||||+|+|++.....++...++|..........++..+.+|||||+.+... ..........+..+
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~ 109 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRY 109 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHH
Confidence 45699999999999999999999998877777777787776666677888999999999965422 11222233334444
Q ss_pred cc--cccEEEEEeeCCC-CCchHHHHHHHHccc-cCC--CCCEEEEEecCCCCCh
Q 015092 193 GI--NADCIVVLVDACK-APERIDEILEEGVGD-HKD--KLPILLVLNKKDLIKP 241 (413)
Q Consensus 193 ~~--~aD~vl~VvD~~~-~~~~~~~~l~~~l~~-~~~--~~p~ilV~NK~Dl~~~ 241 (413)
+. ..|+++||...+. .....+..+.+.++. ++. -.++++|+||+|...+
T Consensus 110 l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 110 LKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 43 5788999875543 233444444444433 111 2579999999998744
No 263
>PTZ00099 rab6; Provisional
Probab=99.49 E-value=2e-13 Score=122.41 Aligned_cols=116 Identities=22% Similarity=0.275 Sum_probs=80.1
Q ss_pred CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCC
Q 015092 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKD 237 (413)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~D 237 (413)
.+..++.||||||. ..+..+ ...+++.||++|+|+|++++. +....|+...++......|++||+||+|
T Consensus 26 ~~~v~l~iwDt~G~--e~~~~~-------~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~D 96 (176)
T PTZ00099 26 EGPVRLQLWDTAGQ--ERFRSL-------IPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTD 96 (176)
T ss_pred CEEEEEEEEECCCh--HHhhhc-------cHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcc
Confidence 44578999999994 333333 334478999999999998753 4445555555443335689999999999
Q ss_pred CCChhhH--HHHHHHHHhcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCC
Q 015092 238 LIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (413)
Q Consensus 238 l~~~~~~--~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~ 286 (413)
+.....+ .+........ + ..++++||++|.|+++++++|.+.+++.+
T Consensus 97 L~~~~~v~~~e~~~~~~~~-~-~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 97 LGDLRKVTYEEGMQKAQEY-N-TMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred cccccCCCHHHHHHHHHHc-C-CEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 9643211 1222222222 2 36899999999999999999999887644
No 264
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.49 E-value=8.4e-14 Score=116.00 Aligned_cols=111 Identities=22% Similarity=0.349 Sum_probs=68.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcee---eeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLS---IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~---~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+|+|+|.+|||||||+++|++.... ......+.+..............+.+||++|.. .+..... ..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~--~~~~~~~-------~~~ 71 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQE--EFYSQHQ-------FFL 71 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSH--CHHCTSH-------HHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccc--eeccccc-------chh
Confidence 6899999999999999999988765 122333333333333344444568999999952 2221111 126
Q ss_pred ccccEEEEEeeCCCCC--chHHH---HHHHHccccCCCCCEEEEEecCC
Q 015092 194 INADCIVVLVDACKAP--ERIDE---ILEEGVGDHKDKLPILLVLNKKD 237 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~---~l~~~l~~~~~~~p~ilV~NK~D 237 (413)
..+|++++|+|.+++. ..... ++.. ++....+.|+++|+||.|
T Consensus 72 ~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~-~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 72 KKADAVILVYDLSDPESLEYLSQLLKWLKN-IRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHSCEEEEEEECCGHHHHHHHHHHHHHHHH-HHHHSSCSEEEEEEE-TC
T ss_pred hcCcEEEEEEcCCChHHHHHHHHHHHHHHH-HHccCCCCCEEEEEeccC
Confidence 7899999999998754 11111 2222 222225699999999998
No 265
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.49 E-value=4.7e-13 Score=131.57 Aligned_cols=88 Identities=24% Similarity=0.288 Sum_probs=71.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC-----------------eeEEEEeCCCCchhhh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKI 178 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~~ 178 (413)
.+|+|||.||||||||+|+|++.+ +.++++|+||+++..+++...+ .++.++||||+.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 489999999999999999999998 5689999999999888876554 2589999999975221
Q ss_pred hhHHHHHHHHHHhhcccccEEEEEeeCC
Q 015092 179 HMLDSMMMKNVRSAGINADCIVVLVDAC 206 (413)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~vl~VvD~~ 206 (413)
....+.......++.||++++|||+.
T Consensus 82 --~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 --KGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred --hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 12334456677788999999999985
No 266
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=8.5e-13 Score=109.93 Aligned_cols=157 Identities=19% Similarity=0.191 Sum_probs=112.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+..++.++|-.++||||++..|.......+.+ |+. .....+++.+..+++||..|. .. +...++.++
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ip---TvG-FnvetVtykN~kfNvwdvGGq--d~-------iRplWrhYy 82 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIP---TVG-FNVETVTYKNVKFNVWDVGGQ--DK-------IRPLWRHYY 82 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCccccc---ccc-eeEEEEEeeeeEEeeeeccCc--hh-------hhHHHHhhc
Confidence 34589999999999999999997765432222 222 223345777899999999993 33 334478889
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccccC-CCCCEEEEEecCCCCChhhHHHHHHHHH---hcCCCccEEEcccCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSAKY 267 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~v~~iSA~~ 267 (413)
.....+|||+|+.+.. ++...++...+.... ...|+++..||.|+..+....++...+. .....+-+.|+||.+
T Consensus 83 ~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~ 162 (180)
T KOG0071|consen 83 TGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALS 162 (180)
T ss_pred cCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccccc
Confidence 9999999999987653 444555655554422 5789999999999986544333333332 222345689999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 015092 268 GHGVEDIRDWILTKLP 283 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~ 283 (413)
|.|+.+-+.||.+.+.
T Consensus 163 gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 163 GDGLKEGLSWLSNNLK 178 (180)
T ss_pred chhHHHHHHHHHhhcc
Confidence 9999999999988764
No 267
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.48 E-value=1.6e-12 Score=124.78 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=81.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeC--------CCCceE-EEEEEEEeCCC--eeEEEEeCCCCchhhh-----h
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN--------KPQTTR-HRILGICSGPE--YQMILYDTPGIIEKKI-----H 179 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~--------~~~tt~-~~~~~~~~~~~--~~~~l~DtpG~~~~~~-----~ 179 (413)
.+|+++|.+|+|||||+|+|++..+..... ...|+. ......+..++ .++.+|||||+.+... .
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~ 84 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWK 84 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHH
Confidence 489999999999999999999988764332 233332 22233344444 4699999999865221 1
Q ss_pred hHHHHHHHHHH------------hhcc--cccEEEEEeeCCC-CCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhH
Q 015092 180 MLDSMMMKNVR------------SAGI--NADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (413)
Q Consensus 180 ~l~~~~~~~~~------------~~~~--~aD~vl~VvD~~~-~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~ 244 (413)
.+..++.++.. ..+. .+|+++|+++++. +....+..+++.+.. +.|+++|+||+|+....++
T Consensus 85 ~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~---~v~vi~VinK~D~l~~~e~ 161 (276)
T cd01850 85 PIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK---RVNIIPVIAKADTLTPEEL 161 (276)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc---cCCEEEEEECCCcCCHHHH
Confidence 11111111111 1122 5899999999874 556666555555543 6899999999999876554
Q ss_pred H
Q 015092 245 A 245 (413)
Q Consensus 245 ~ 245 (413)
.
T Consensus 162 ~ 162 (276)
T cd01850 162 K 162 (276)
T ss_pred H
Confidence 4
No 268
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=3.7e-13 Score=126.77 Aligned_cols=166 Identities=19% Similarity=0.241 Sum_probs=112.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCcee-----------e--------eeCCCCceE---EEEEEEEeCCC------eeE
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-----------I--------VTNKPQTTR---HRILGICSGPE------YQM 165 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~-----------~--------vs~~~~tt~---~~~~~~~~~~~------~~~ 165 (413)
-..+|+++||.+.|||||..+|.|-... + ....+.+.+ ......+...+ ..+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 3458999999999999999999875321 1 111111111 00111111111 257
Q ss_pred EEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCC-chHHHHHHHHccccCCCCCEEEEEecCCCCChhhH
Q 015092 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (413)
Q Consensus 166 ~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~-~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~ 244 (413)
.|+|+||+ + .++..+.+.....|.+|+|++++.+. ++++.+.+..+.-. .-+.+|+|-||+|+.+.+..
T Consensus 89 SfVDaPGH--e-------~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi-gik~iiIvQNKIDlV~~E~A 158 (415)
T COG5257 89 SFVDAPGH--E-------TLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII-GIKNIIIVQNKIDLVSRERA 158 (415)
T ss_pred EEeeCCch--H-------HHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh-ccceEEEEecccceecHHHH
Confidence 89999994 2 25566666677889999999999775 55555544433331 34679999999999987766
Q ss_pred HHHHHHHHhcC-----CCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCC
Q 015092 245 AKKLEWYEKFT-----DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYY 289 (413)
Q Consensus 245 ~~~~~~~~~~~-----~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~ 289 (413)
.+..+++.++. ...|++|+||..+.|++.|+++|.+++|.+....
T Consensus 159 lE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~ 208 (415)
T COG5257 159 LENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDL 208 (415)
T ss_pred HHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCC
Confidence 55555554432 3469999999999999999999999998766543
No 269
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.48 E-value=3e-13 Score=148.07 Aligned_cols=115 Identities=22% Similarity=0.222 Sum_probs=85.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceE---------------EEEEEEEeC----------------CC
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR---------------HRILGICSG----------------PE 162 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~---------------~~~~~~~~~----------------~~ 162 (413)
+-.+|+|+||+++|||||+++|+.....+.....++++ ......+.+ .+
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 44589999999999999999998655432222222221 111111122 36
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCC
Q 015092 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (413)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~ 239 (413)
+.++++||||+.+ +...+..+++.+|++|+|||+..+...+++.+++.+.. .++|+++++||+|+.
T Consensus 98 ~~inliDtPGh~d---------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~--~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 98 YLINLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG--ERIRPVLTVNKMDRC 163 (843)
T ss_pred eEEEEECCCCHHH---------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH--CCCCEEEEEECCccc
Confidence 7889999999644 44556777899999999999999998888888887766 789999999999997
No 270
>PRK13768 GTPase; Provisional
Probab=99.47 E-value=7.8e-13 Score=125.41 Aligned_cols=121 Identities=29% Similarity=0.367 Sum_probs=78.4
Q ss_pred eEEEEeCCCCchhh-hhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHc---cccCCCCCEEEEEecCCCC
Q 015092 164 QMILYDTPGIIEKK-IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGV---GDHKDKLPILLVLNKKDLI 239 (413)
Q Consensus 164 ~~~l~DtpG~~~~~-~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l---~~~~~~~p~ilV~NK~Dl~ 239 (413)
.+.+|||||..+.. .......+.+...... ++++++|+|++.+....+......+ .....++|+++|+||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 68999999964321 2223333333332211 8999999999876654442222211 1112579999999999998
Q ss_pred ChhhHHHHHHH----------------------------HHhcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCC
Q 015092 240 KPGEIAKKLEW----------------------------YEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (413)
Q Consensus 240 ~~~~~~~~~~~----------------------------~~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~ 286 (413)
+..+....... +.......+++++||+++.|+++|+++|.+.++.+.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~~ 250 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGGE 250 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCCC
Confidence 66544332222 222234468999999999999999999999997653
No 271
>PLN00023 GTP-binding protein; Provisional
Probab=99.46 E-value=1e-12 Score=126.87 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=77.8
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCceeee-eCCCCceEEEEEEEEe-------------CCCeeEEEEeCCCCchh
Q 015092 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICS-------------GPEYQMILYDTPGIIEK 176 (413)
Q Consensus 111 ~~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~v-s~~~~tt~~~~~~~~~-------------~~~~~~~l~DtpG~~~~ 176 (413)
+.....+|+++|..|||||||+++|++..+... .++.+.+.......+. .....+.||||+| ++
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAG--qE 94 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSG--HE 94 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCC--Ch
Confidence 344556999999999999999999998765321 1222222211111111 1235689999999 44
Q ss_pred hhhhHHHHHHHHHHhhcccccEEEEEeeCCCCC--chHHHHHHHHcccc------------CCCCCEEEEEecCCCCCh
Q 015092 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDH------------KDKLPILLVLNKKDLIKP 241 (413)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~------------~~~~p~ilV~NK~Dl~~~ 241 (413)
.+..+ ...+++.+|++|+|+|+++.. .....|+..+.... ..+.|++||+||+|+...
T Consensus 95 rfrsL-------~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 95 RYKDC-------RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhh-------hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 44444 344588999999999998743 33334443332221 024899999999999653
No 272
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.46 E-value=3.8e-13 Score=128.13 Aligned_cols=86 Identities=26% Similarity=0.320 Sum_probs=69.2
Q ss_pred EEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCe-----------------eEEEEeCCCCchhhhhh
Q 015092 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-----------------QMILYDTPGIIEKKIHM 180 (413)
Q Consensus 118 v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~-----------------~~~l~DtpG~~~~~~~~ 180 (413)
|+|||.||||||||+|+|++.+. .++++|+||+++..+++...+. ++.++||||+.... +
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a-~- 77 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGA-S- 77 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCC-c-
Confidence 58999999999999999999987 6899999999998888776543 59999999997432 1
Q ss_pred HHHHHHHHHHhhcccccEEEEEeeCC
Q 015092 181 LDSMMMKNVRSAGINADCIVVLVDAC 206 (413)
Q Consensus 181 l~~~~~~~~~~~~~~aD~vl~VvD~~ 206 (413)
....+.......++.||++++|||+.
T Consensus 78 ~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 78 KGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 12233445666788999999999974
No 273
>PTZ00416 elongation factor 2; Provisional
Probab=99.45 E-value=5.6e-13 Score=145.70 Aligned_cols=115 Identities=20% Similarity=0.223 Sum_probs=85.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceE---------------EEEEEEEeCC----------CeeEEEE
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR---------------HRILGICSGP----------EYQMILY 168 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~---------------~~~~~~~~~~----------~~~~~l~ 168 (413)
+-.+|+|+||+++|||||+++|+.....+.....++++ ......+.+. ++.++|+
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 34489999999999999999998755432222223322 1100112222 5779999
Q ss_pred eCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCC
Q 015092 169 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (413)
Q Consensus 169 DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~ 239 (413)
||||+.+ +...+..++..+|++|+|+|+..+...+++.++..+.. .+.|+++++||+|+.
T Consensus 98 DtPG~~~---------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~--~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVD---------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQ--ERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHh---------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHH--cCCCEEEEEEChhhh
Confidence 9999743 44556777899999999999999998888888887776 679999999999997
No 274
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=2.1e-12 Score=122.56 Aligned_cols=160 Identities=18% Similarity=0.221 Sum_probs=104.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC--ceee----eeCCCCceEEEEEEEE---------eCCCeeEEEEeCCCCchhhhhh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQ--KLSI----VTNKPQTTRHRILGIC---------SGPEYQMILYDTPGIIEKKIHM 180 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~--~~~~----vs~~~~tt~~~~~~~~---------~~~~~~~~l~DtpG~~~~~~~~ 180 (413)
.+++++||.++|||||..+|... ..+. .+...+.|.+.....+ ..+..++.++||||+..
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas----- 82 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS----- 82 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH-----
Confidence 58999999999999999999543 2221 1222233333222211 12345789999999532
Q ss_pred HHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhH----HHHHHHHHh---
Q 015092 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI----AKKLEWYEK--- 253 (413)
Q Consensus 181 l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~--- 253 (413)
+.+.+.....-.|+.++|||+..+.+.+..+.+-+-.. .-...++|+||+|....... .+....+.+
T Consensus 83 ----LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~--~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe 156 (522)
T KOG0461|consen 83 ----LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL--LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLE 156 (522)
T ss_pred ----HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh--hccceEEEEeccccccchhhhhHHHHHHHHHHHHHH
Confidence 44555555667899999999999886665443322122 34568899999998754322 222222221
Q ss_pred ---cCCCccEEEcccCCC----CCHHHHHHHHHhhCCCCC
Q 015092 254 ---FTDVDEVIPVSAKYG----HGVEDIRDWILTKLPLGP 286 (413)
Q Consensus 254 ---~~~~~~v~~iSA~~g----~gv~~L~~~l~~~l~~~~ 286 (413)
..+..|++++||+.| +++.+|.+.|.+.+..+.
T Consensus 157 ~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~ 196 (522)
T KOG0461|consen 157 STGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK 196 (522)
T ss_pred hcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC
Confidence 335579999999999 899999999988876543
No 275
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.42 E-value=2.7e-12 Score=123.26 Aligned_cols=131 Identities=19% Similarity=0.276 Sum_probs=87.8
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHH
Q 015092 109 SHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (413)
Q Consensus 109 ~~~~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (413)
+..+....+|+++|.+|+||||++|+|+|.....++...+++..........++.++.+|||||+.+.. .+.......
T Consensus 32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~--~~~e~~~~~ 109 (313)
T TIGR00991 32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG--YINDQAVNI 109 (313)
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH--HHHHHHHHH
Confidence 444456779999999999999999999999987777777666555444455678999999999986532 222222232
Q ss_pred HHhhc--ccccEEEEEeeCCC-CCchHHHHHHHHcccc-C--CCCCEEEEEecCCCCCh
Q 015092 189 VRSAG--INADCIVVLVDACK-APERIDEILEEGVGDH-K--DKLPILLVLNKKDLIKP 241 (413)
Q Consensus 189 ~~~~~--~~aD~vl~VvD~~~-~~~~~~~~l~~~l~~~-~--~~~p~ilV~NK~Dl~~~ 241 (413)
+..++ ...|++|||...+. .....+..+.+.++.. + --.+.|+|+|++|...+
T Consensus 110 ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 110 IKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 33222 26999999955432 2444444444443332 1 23679999999997643
No 276
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=2.1e-12 Score=107.55 Aligned_cols=151 Identities=23% Similarity=0.275 Sum_probs=103.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEE-EEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH-RILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~-~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+-.|+|.-|||||.|+..+...++. .+.|+|... ....+ +.....++.+|||+| ++.++ .-.++++
T Consensus 13 kyiiigdmgvgkscllhqftekkfm--adcphtigvefgtriievsgqkiklqiwdtag--qerfr-------avtrsyy 81 (215)
T KOG0097|consen 13 KYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG--QERFR-------AVTRSYY 81 (215)
T ss_pred EEEEEccccccHHHHHHHHHHHHHh--hcCCcccceecceeEEEecCcEEEEEEeeccc--HHHHH-------HHHHHHh
Confidence 6788999999999999999988874 556655422 11222 344556789999999 54443 4467789
Q ss_pred ccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCCC
Q 015092 194 INADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
+.+-.+++|+|++.... ....|+......-.++..+++++||.|+...+++. +....+.+..+. -++++||++|.|
T Consensus 82 rgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl-~fle~saktg~n 160 (215)
T KOG0097|consen 82 RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGL-MFLEASAKTGQN 160 (215)
T ss_pred ccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCe-EEEEecccccCc
Confidence 99999999999986542 33444443222112677789999999997654432 223334443343 578999999999
Q ss_pred HHHHHHHHH
Q 015092 271 VEDIRDWIL 279 (413)
Q Consensus 271 v~~L~~~l~ 279 (413)
+++.+-.-.
T Consensus 161 vedafle~a 169 (215)
T KOG0097|consen 161 VEDAFLETA 169 (215)
T ss_pred HHHHHHHHH
Confidence 998664433
No 277
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.41 E-value=1.1e-13 Score=114.14 Aligned_cols=154 Identities=19% Similarity=0.187 Sum_probs=97.8
Q ss_pred EEcCCCCCHHHHHHHHhCCceeeeeCCCCce-EEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015092 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 120 ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt-~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
++|.+++|||.|+-++-...+.. .....|. .+.....++ ....++.+|||+| ++.++++ ...++++|
T Consensus 2 llgds~~gktcllir~kdgafl~-~~fistvgid~rnkli~~~~~kvklqiwdtag--qerfrsv-------t~ayyrda 71 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLA-GNFISTVGIDFRNKLIDMDDKKVKLQIWDTAG--QERFRSV-------THAYYRDA 71 (192)
T ss_pred ccccCccCceEEEEEeccCceec-CceeeeeeeccccceeccCCcEEEEEEeeccc--hHHHhhh-------hHhhhccc
Confidence 68999999999987654333321 1111111 111122223 3346789999999 5555443 55668999
Q ss_pred cEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCCCHHH
Q 015092 197 DCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (413)
Q Consensus 197 D~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~gv~~ 273 (413)
|.+++++|+.+.. .....|+.+.-........+.+++||||+...+.+. +.-+.+.+.++ .|++++||++|.|++-
T Consensus 72 ~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~-ipfmetsaktg~nvd~ 150 (192)
T KOG0083|consen 72 DALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYG-IPFMETSAKTGFNVDL 150 (192)
T ss_pred ceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHC-CCceeccccccccHhH
Confidence 9999999998654 444555544322222467889999999996533221 11222333334 3899999999999999
Q ss_pred HHHHHHhhCCC
Q 015092 274 IRDWILTKLPL 284 (413)
Q Consensus 274 L~~~l~~~l~~ 284 (413)
-+-.|.+.+..
T Consensus 151 af~~ia~~l~k 161 (192)
T KOG0083|consen 151 AFLAIAEELKK 161 (192)
T ss_pred HHHHHHHHHHH
Confidence 99888876643
No 278
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.41 E-value=1.7e-12 Score=106.29 Aligned_cols=142 Identities=20% Similarity=0.253 Sum_probs=101.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
++++||..|+|||||.++|.|.... +..|.- +++. .=-.+||||..-+ ...........+.++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l-----ykKTQA-----ve~~--d~~~IDTPGEy~~-----~~~~Y~aL~tt~~da 65 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL-----YKKTQA-----VEFN--DKGDIDTPGEYFE-----HPRWYHALITTLQDA 65 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh-----hcccce-----eecc--CccccCCchhhhh-----hhHHHHHHHHHhhcc
Confidence 7999999999999999999997643 111111 1111 1125899994211 112223344456799
Q ss_pred cEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHHH
Q 015092 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (413)
Q Consensus 197 D~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~ 276 (413)
|++++|-.++++.......+... ..+|+|-|++|+|+..+.++.....++...+ ..++|.+|+....|+++|++
T Consensus 66 dvi~~v~~and~~s~f~p~f~~~-----~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG-a~~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 66 DVIIYVHAANDPESRFPPGFLDI-----GVKKVIGVVTKADLAEDADISLVKRWLREAG-AEPIFETSAVDNQGVEELVD 139 (148)
T ss_pred ceeeeeecccCccccCCcccccc-----cccceEEEEecccccchHhHHHHHHHHHHcC-CcceEEEeccCcccHHHHHH
Confidence 99999999888765443333322 3567999999999998888887778877765 67999999999999999999
Q ss_pred HHHhh
Q 015092 277 WILTK 281 (413)
Q Consensus 277 ~l~~~ 281 (413)
+|...
T Consensus 140 ~L~~~ 144 (148)
T COG4917 140 YLASL 144 (148)
T ss_pred HHHhh
Confidence 98754
No 279
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=4.6e-12 Score=124.62 Aligned_cols=156 Identities=19% Similarity=0.153 Sum_probs=122.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcee--eeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~--~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
.|+..||...|||||+.++.|..-. .-..+.|+|.+........++..+.|+|.||+.+ +...+...+.
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~---------~i~~miag~~ 72 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPD---------FISNLLAGLG 72 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHH---------HHHHHHhhhc
Confidence 5788999999999999999886533 2345778899888888888888999999999632 4455666678
Q ss_pred cccEEEEEeeCCCCCchHHHHHHHHccccCCCCC-EEEEEecCCCCChhhHHHHHHHHHhc--CCCccEEEcccCCCCCH
Q 015092 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKKLEWYEKF--TDVDEVIPVSAKYGHGV 271 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilV~NK~Dl~~~~~~~~~~~~~~~~--~~~~~v~~iSA~~g~gv 271 (413)
..|.+++|||+.+++..++.+.+..++. .+.+ .++|+||+|+.+...+......+... ....++|++||++|.|+
T Consensus 73 ~~d~alLvV~~deGl~~qtgEhL~iLdl--lgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI 150 (447)
T COG3276 73 GIDYALLVVAADEGLMAQTGEHLLILDL--LGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGI 150 (447)
T ss_pred CCceEEEEEeCccCcchhhHHHHHHHHh--cCCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCH
Confidence 9999999999999998888777777766 4544 59999999999765554443333322 23457899999999999
Q ss_pred HHHHHHHHhhCC
Q 015092 272 EDIRDWILTKLP 283 (413)
Q Consensus 272 ~~L~~~l~~~l~ 283 (413)
++|...|.+...
T Consensus 151 ~~Lk~~l~~L~~ 162 (447)
T COG3276 151 EELKNELIDLLE 162 (447)
T ss_pred HHHHHHHHHhhh
Confidence 999999998873
No 280
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.2e-12 Score=109.42 Aligned_cols=157 Identities=16% Similarity=0.212 Sum_probs=107.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+..++.++|--|+||||++-++--.++...-++++.. ...+++++.++.+||..|. .+ +..-++.++
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfn----ve~v~yKNLk~~vwdLggq--tS-------irPyWRcYy 83 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFN----VETVPYKNLKFQVWDLGGQ--TS-------IRPYWRCYY 83 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcC----ccccccccccceeeEccCc--cc-------ccHHHHHHh
Confidence 5558999999999999998888655543222333322 2334567889999999994 33 223477889
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccccC-CCCCEEEEEecCCCCChhh---HHHHHHHHHhcCCCccEEEcccCC
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
.+.|.+|||||.++.. ......+...+++.. .+..+++++||.|...... ....+...........+|.+||.+
T Consensus 84 ~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~k 163 (182)
T KOG0072|consen 84 ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVK 163 (182)
T ss_pred cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeecccc
Confidence 9999999999988754 223344444454422 4577899999999864332 222222222223446899999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 015092 268 GHGVEDIRDWILTKLP 283 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~ 283 (413)
|+|++..++||.+-++
T Consensus 164 g~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 164 GEGLDPAMDWLQRPLK 179 (182)
T ss_pred ccCCcHHHHHHHHHHh
Confidence 9999999999988765
No 281
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.37 E-value=3.1e-12 Score=106.71 Aligned_cols=160 Identities=20% Similarity=0.276 Sum_probs=112.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
.|..++.++|-.|+||||++..|.+.....+.++.|..... +-..+.+.+++||..| +..-+ ..+..+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~---v~~~g~f~LnvwDiGG--qr~IR-------pyWsNY 82 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKK---VEYDGTFHLNVWDIGG--QRGIR-------PYWSNY 82 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEE---EeecCcEEEEEEecCC--ccccc-------hhhhhh
Confidence 46679999999999999999999998876555554433222 2223448999999999 43322 236677
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHccccC-CCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCccEEEcccC
Q 015092 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAK 266 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~iSA~ 266 (413)
+.+.|.+|||+|+++.- ++..+.+.+++...+ ...|+++..||.|+.......+....+.. ....+.+-.+||.
T Consensus 83 yenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csal 162 (185)
T KOG0074|consen 83 YENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSAL 162 (185)
T ss_pred hhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccc
Confidence 99999999999976532 444455555554432 56899999999999865444433222211 1123578899999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 015092 267 YGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 267 ~g~gv~~L~~~l~~~l~~ 284 (413)
+++|+.+-.+|+......
T Consensus 163 s~eg~~dg~~wv~sn~~~ 180 (185)
T KOG0074|consen 163 SLEGSTDGSDWVQSNPET 180 (185)
T ss_pred cccCccCcchhhhcCCCC
Confidence 999999999998876543
No 282
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.37 E-value=2.2e-12 Score=121.77 Aligned_cols=158 Identities=23% Similarity=0.207 Sum_probs=107.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEe-CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
..+.|++||++|+|||||+++|++.... ..+.-..|.++...... ..|..+++.||-|+.+.-+..+-..|. .+..-
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~-p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~-ATLee 254 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALY-PNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQ-ATLEE 254 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcC-ccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHH-HHHHH
Confidence 4569999999999999999999965543 23444445444332222 345678999999998766665655553 34445
Q ss_pred cccccEEEEEeeCCCCC-chHHHHHHHHccccC-CCCC----EEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccC
Q 015092 193 GINADCIVVLVDACKAP-ERIDEILEEGVGDHK-DKLP----ILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~-~~~~~~l~~~l~~~~-~~~p----~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~ 266 (413)
...+|++|.|+|+++|. +.+...++..++... +..| ++=|=||+|..+...-. + . ...+++||+
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~-------E--~-n~~v~isal 324 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE-------E--K-NLDVGISAL 324 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc-------c--c-CCccccccc
Confidence 67899999999999987 444555555555532 2233 45567777765432110 0 1 126899999
Q ss_pred CCCCHHHHHHHHHhhCC
Q 015092 267 YGHGVEDIRDWILTKLP 283 (413)
Q Consensus 267 ~g~gv~~L~~~l~~~l~ 283 (413)
+|.|++++++.+-..+.
T Consensus 325 tgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 325 TGDGLEELLKAEETKVA 341 (410)
T ss_pred cCccHHHHHHHHHHHhh
Confidence 99999999999887654
No 283
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.36 E-value=1.5e-12 Score=116.80 Aligned_cols=160 Identities=18% Similarity=0.149 Sum_probs=109.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeC---CCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
+..+++|||..++|||+|+..+....+. ..+..|-.+.....+.. ....+.+|||+| ++.++.++.
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp--~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAG--qedYDrlRp------- 71 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFP--EEYVPTVFDNYSANVTVDDGKPVELGLWDTAG--QEDYDRLRP------- 71 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCc--ccccCeEEccceEEEEecCCCEEEEeeeecCC--Ccccccccc-------
Confidence 4468999999999999999888777553 44444544444333333 345678999999 555655532
Q ss_pred hhcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-------------HHHHHHHhcC
Q 015092 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFT 255 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-------------~~~~~~~~~~ 255 (413)
-.+..+|++|++++..++. ......+...++...++.|+|||++|.||.+..... .....+.+..
T Consensus 72 lsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~i 151 (198)
T KOG0393|consen 72 LSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEI 151 (198)
T ss_pred cCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHh
Confidence 2588999999999987764 232333334445545789999999999997432111 1112233334
Q ss_pred CCccEEEcccCCCCCHHHHHHHHHhhCCC
Q 015092 256 DVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 256 ~~~~v~~iSA~~g~gv~~L~~~l~~~l~~ 284 (413)
+...++++||++..|+.++++.....+-.
T Consensus 152 ga~~y~EcSa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 152 GAVKYLECSALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred CcceeeeehhhhhCCcHHHHHHHHHHHhc
Confidence 55689999999999999999987776543
No 284
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.35 E-value=5e-12 Score=124.13 Aligned_cols=163 Identities=18% Similarity=0.264 Sum_probs=104.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC----cee-----------eeeCCCC---ceEEEEE---E---EEeC--CCeeEEEEeC
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQ----KLS-----------IVTNKPQ---TTRHRIL---G---ICSG--PEYQMILYDT 170 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~----~~~-----------~vs~~~~---tt~~~~~---~---~~~~--~~~~~~l~Dt 170 (413)
.|+++|+.|+|||||+|+|++. +.. .+++.+| +|.++.. . +... -...+.++||
T Consensus 19 yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDc 98 (492)
T TIGR02836 19 YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDC 98 (492)
T ss_pred EEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEEC
Confidence 7999999999999999999998 766 6888888 6666554 1 1112 2357899999
Q ss_pred CCCchhhh-hhHHH---HHH------------H----HHHhhcc-cccEEEEEe-eCC------CCCchHHHHHHHHccc
Q 015092 171 PGIIEKKI-HMLDS---MMM------------K----NVRSAGI-NADCIVVLV-DAC------KAPERIDEILEEGVGD 222 (413)
Q Consensus 171 pG~~~~~~-~~l~~---~~~------------~----~~~~~~~-~aD~vl~Vv-D~~------~~~~~~~~~l~~~l~~ 222 (413)
+|+..... ..++. +|+ . -++..+. .+|+.|+|. |++ .......+.+.+.++.
T Consensus 99 vG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~ 178 (492)
T TIGR02836 99 VGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE 178 (492)
T ss_pred CCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHh
Confidence 99854211 00000 000 0 0344566 899999999 875 3344455566666777
Q ss_pred cCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCC--CCCHHHHHHHHHhhCC
Q 015092 223 HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY--GHGVEDIRDWILTKLP 283 (413)
Q Consensus 223 ~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~--g~gv~~L~~~l~~~l~ 283 (413)
.++|+++|+||+|-.... .......+...++ .+++++|+.. ...+..+++.++...|
T Consensus 179 --~~kPfiivlN~~dp~~~e-t~~l~~~l~eky~-vpvl~v~c~~l~~~DI~~il~~vL~EFP 237 (492)
T TIGR02836 179 --LNKPFIILLNSTHPYHPE-TEALRQELEEKYD-VPVLAMDVESMRESDILSVLEEVLYEFP 237 (492)
T ss_pred --cCCCEEEEEECcCCCCch-hHHHHHHHHHHhC-CceEEEEHHHcCHHHHHHHHHHHHhcCC
Confidence 799999999999943322 1222333344334 4788888863 3455555555554443
No 285
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.32 E-value=7.5e-12 Score=115.62 Aligned_cols=167 Identities=16% Similarity=0.144 Sum_probs=100.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeee-CCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHHHHHHHHHHhhc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRSAG 193 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs-~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~l~~~~~~~~~~~~ 193 (413)
+|+++|.+|+||||++|.|+|....... .....|..........++..+.++||||+.+... ..+...+.+.+....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~ 81 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCS 81 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhcc
Confidence 7999999999999999999999875443 2334455555555577889999999999965332 122233334344445
Q ss_pred ccccEEEEEeeCCCCCchHHHHHHHHcccc-C--CCCCEEEEEecCCCCChhhHHHHH---------HHHHhcCCCccEE
Q 015092 194 INADCIVVLVDACKAPERIDEILEEGVGDH-K--DKLPILLVLNKKDLIKPGEIAKKL---------EWYEKFTDVDEVI 261 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~-~--~~~p~ilV~NK~Dl~~~~~~~~~~---------~~~~~~~~~~~v~ 261 (413)
...+++|||++.. .+...+...++.+... + --..++||++..|......+.+.. ..+....+ .++
T Consensus 82 ~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~--R~~ 158 (212)
T PF04548_consen 82 PGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGG--RYH 158 (212)
T ss_dssp T-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT--CEE
T ss_pred CCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCC--EEE
Confidence 6799999999987 5554444444333321 1 124689999999977654432222 22333333 344
Q ss_pred EcccC------CCCCHHHHHHHHHhhCCCCC
Q 015092 262 PVSAK------YGHGVEDIRDWILTKLPLGP 286 (413)
Q Consensus 262 ~iSA~------~g~gv~~L~~~l~~~l~~~~ 286 (413)
..+.+ ....+.+|++.|-..+....
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 44433 33567888888887776543
No 286
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=5.1e-12 Score=107.38 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=98.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCce---EEEEEEEEeC---------CCeeEEEEeCCCCchhhhhhHHHH
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT---RHRILGICSG---------PEYQMILYDTPGIIEKKIHMLDSM 184 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt---~~~~~~~~~~---------~~~~~~l~DtpG~~~~~~~~l~~~ 184 (413)
+...+|.+||||||++.+.+..++.. ....|. ......++.. ....+.+|||+| ++.++++...
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~--qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAG--QERFRSLTTA 86 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNT--QFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAG--QERFRSLTTA 86 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccc--eeEEEeecccccceEEEeccCCCCCCcceEEEEeeecccc--HHHHHHHHHH
Confidence 45567999999999998887666531 111010 0000111111 113578999999 6777776554
Q ss_pred HHHHHHhhcccccEEEEEeeCCCCC--chHHHHHHHHccc-cCCCCCEEEEEecCCCCChhhHHH-HHHHHHhcCCCccE
Q 015092 185 MMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEV 260 (413)
Q Consensus 185 ~~~~~~~~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~-~~~~~p~ilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~v 260 (413)
+ +++|-..|+++|.++.. -....|+.++... ...+.-+++++||+|+.+.+.+.+ ....+....+. |+
T Consensus 87 F-------fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kygl-PY 158 (219)
T KOG0081|consen 87 F-------FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGL-PY 158 (219)
T ss_pred H-------HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCC-Ce
Confidence 4 67788899999987643 3344455443221 125667899999999987665543 23344444444 99
Q ss_pred EEcccCCCCCHHHHHHHHHhhC
Q 015092 261 IPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 261 ~~iSA~~g~gv~~L~~~l~~~l 282 (413)
|++||-+|.||.+-.+.|+..+
T Consensus 159 fETSA~tg~Nv~kave~Lldlv 180 (219)
T KOG0081|consen 159 FETSACTGTNVEKAVELLLDLV 180 (219)
T ss_pred eeeccccCcCHHHHHHHHHHHH
Confidence 9999999999988777776654
No 287
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1.3e-10 Score=108.64 Aligned_cols=161 Identities=19% Similarity=0.210 Sum_probs=107.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCce-------e---ee-----eCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhh
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKL-------S---IV-----TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~-------~---~v-----s~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 179 (413)
..+|+.+||.+.|||||.-+|+..-. . .. ....|.|.......+......+-.+||||+.+
T Consensus 12 hVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD---- 87 (394)
T COG0050 12 HVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD---- 87 (394)
T ss_pred eeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH----
Confidence 34899999999999999999853211 0 01 11224455555555667778899999999654
Q ss_pred hHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCC-EEEEEecCCCCChhhHHHH-----HHHHHh
Q 015092 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKK-----LEWYEK 253 (413)
Q Consensus 180 ~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilV~NK~Dl~~~~~~~~~-----~~~~~~ 253 (413)
+.+.+.......|.+|+|+.+.+++-+++..-.-+.++ .+.| +++++||+|+.+..++.+. .+.+..
T Consensus 88 -----YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarq--vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~ 160 (394)
T COG0050 88 -----YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ--VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred -----HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhh--cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence 33444445568999999999999997777665555555 5665 5667999999976554322 122222
Q ss_pred c---CCCccEEEcccCCCC--------CHHHHHHHHHhhCCCCC
Q 015092 254 F---TDVDEVIPVSAKYGH--------GVEDIRDWILTKLPLGP 286 (413)
Q Consensus 254 ~---~~~~~v~~iSA~~g~--------gv~~L~~~l~~~l~~~~ 286 (413)
+ ....|++.-||+.-. .+.+|++++.+++|.+.
T Consensus 161 y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Pe 204 (394)
T COG0050 161 YGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPE 204 (394)
T ss_pred cCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCC
Confidence 1 123578888886532 35788888888887554
No 288
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=4.3e-11 Score=121.00 Aligned_cols=204 Identities=20% Similarity=0.212 Sum_probs=128.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCc------------------------eeeee------CCCCceEEEEEEEEeCCCe
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQK------------------------LSIVT------NKPQTTRHRILGICSGPEY 163 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~------------------------~~~vs------~~~~tt~~~~~~~~~~~~~ 163 (413)
....++++||.++|||||+-+|+..- ++-+- ...|.|.+.....+.....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 34589999999999999999885211 01111 2234555555556666777
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCC-------chHHHHHHHHccccCCCCCEEEEEecC
Q 015092 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLPILLVLNKK 236 (413)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~-------~~~~~~l~~~l~~~~~~~p~ilV~NK~ 236 (413)
.++|+|+||+.+ |...+......||++++|||++.+. ..++.+...+++.+ .-..+++++||+
T Consensus 256 ~~tliDaPGhkd---------Fi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L-gi~qlivaiNKm 325 (603)
T KOG0458|consen 256 IVTLIDAPGHKD---------FIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL-GISQLIVAINKM 325 (603)
T ss_pred eEEEecCCCccc---------cchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc-CcceEEEEeecc
Confidence 899999999643 3344555567899999999998653 33455566666653 246789999999
Q ss_pred CCCCh--hhHHHH---HHHHH-hcCCC----ccEEEcccCCCCCHHHH---------------HHHHHhhCCCCCCCCCC
Q 015092 237 DLIKP--GEIAKK---LEWYE-KFTDV----DEVIPVSAKYGHGVEDI---------------RDWILTKLPLGPAYYPK 291 (413)
Q Consensus 237 Dl~~~--~~~~~~---~~~~~-~~~~~----~~v~~iSA~~g~gv~~L---------------~~~l~~~l~~~~~~~~~ 291 (413)
|++.- +...++ +..+. +..+| ..++|||+.+|+|+-.. ++.|-. +. .|.
T Consensus 326 D~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~-----~p~ 399 (603)
T KOG0458|consen 326 DLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FK-----IPE 399 (603)
T ss_pred cccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhh-cc-----CCC
Confidence 99853 222222 22222 33333 36899999999998542 233322 11 111
Q ss_pred CccCCchhhHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCCeeEEE
Q 015092 292 DIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQ 341 (413)
Q Consensus 292 ~~~t~~~~~~~~~eiiReki~~~~~~eipys~~v~v~~~~~~~~~~~~i~ 341 (413)
.. .+.|.+.-+.++++ -+..+.+....+..|...+|..++|.
T Consensus 400 ~~-~~kPl~ltIsdi~~-------~~~~~~~i~gkiesG~iq~gqkl~i~ 441 (603)
T KOG0458|consen 400 RP-IDKPLRLTISDIYP-------LPSSGVSISGKIESGYIQPGQKLYIM 441 (603)
T ss_pred Cc-ccCCeEEEhhheee-------cCCCeeEEEEEEeccccccCCEEEEe
Confidence 11 34466655666543 35556777778888887777666654
No 289
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.30 E-value=7.6e-12 Score=114.22 Aligned_cols=156 Identities=24% Similarity=0.300 Sum_probs=112.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
+|+++|.|.||||||+..+++.... ...+..||...+.+++.+++..+.++|.||+.......- .--+++.+..+-|
T Consensus 64 RValIGfPSVGKStlLs~iT~T~Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgk--GRGRQviavArta 140 (364)
T KOG1486|consen 64 RVALIGFPSVGKSTLLSKITSTHSE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGK--GRGRQVIAVARTA 140 (364)
T ss_pred EEEEecCCCccHHHHHHHhhcchhh-hhceeeeEEEeecceEEecCceEEEecCcccccccccCC--CCCceEEEEeecc
Confidence 8999999999999999999987755 467889999999999999999999999999976322111 0123455567889
Q ss_pred cEEEEEeeCCCCCchH---HHHH---------------------------------------------------------
Q 015092 197 DCIVVLVDACKAPERI---DEIL--------------------------------------------------------- 216 (413)
Q Consensus 197 D~vl~VvD~~~~~~~~---~~~l--------------------------------------------------------- 216 (413)
|++++|.|++.+.... ..++
T Consensus 141 DlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~R 220 (364)
T KOG1486|consen 141 DLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFR 220 (364)
T ss_pred cEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEe
Confidence 9999999998753111 1001
Q ss_pred --------HHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHHHHHHhhC
Q 015092 217 --------EEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 217 --------~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
...+...+.-.+++.|.||+|...-+++... ... ..-+.+|+....|++.|++.|.+.+
T Consensus 221 eD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eevdrl----Ar~---PnsvViSC~m~lnld~lle~iWe~l 287 (364)
T KOG1486|consen 221 EDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEVDRL----ARQ---PNSVVISCNMKLNLDRLLERIWEEL 287 (364)
T ss_pred cCCChHHHHHHHhccceEEEEEEEeeccceecHHHHHHH----hcC---CCcEEEEeccccCHHHHHHHHHHHh
Confidence 1111111134678889999998776555432 222 2457789999999999999999876
No 290
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.29 E-value=2.4e-11 Score=107.54 Aligned_cols=112 Identities=29% Similarity=0.331 Sum_probs=71.1
Q ss_pred EEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEE----------------------------------------
Q 015092 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI---------------------------------------- 157 (413)
Q Consensus 118 v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~---------------------------------------- 157 (413)
|+++|..++|||||+|+|+|.....++..+.|........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 7899999999999999999988654333332221111100
Q ss_pred ---------------EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchH-HHHHHHHcc
Q 015092 158 ---------------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI-DEILEEGVG 221 (413)
Q Consensus 158 ---------------~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~-~~~l~~~l~ 221 (413)
.......+.|+||||+...... .. ..+..++..+|++|||+++.+..... ...+.+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~--~~---~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~ 155 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSE--HT---EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLD 155 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTT--TS---HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHT
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhh--hH---HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhc
Confidence 0011124899999998541111 11 33556678999999999999876543 444555555
Q ss_pred ccCCCCCEEEEEecC
Q 015092 222 DHKDKLPILLVLNKK 236 (413)
Q Consensus 222 ~~~~~~p~ilV~NK~ 236 (413)
. ....+++|+||+
T Consensus 156 ~--~~~~~i~V~nk~ 168 (168)
T PF00350_consen 156 P--DKSRTIFVLNKA 168 (168)
T ss_dssp T--TCSSEEEEEE-G
T ss_pred C--CCCeEEEEEcCC
Confidence 4 456699999995
No 291
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.29 E-value=3.8e-11 Score=112.30 Aligned_cols=125 Identities=19% Similarity=0.215 Sum_probs=83.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEE-------------------------------------
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG------------------------------------- 156 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~------------------------------------- 156 (413)
..|.++++|+.|+||||++++|.|..+..... ...|+.+..-
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~-g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCC-CcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999875321111 0111111000
Q ss_pred ---------------EEeCCCeeEEEEeCCCCchhh----hhhHHHHHHHHHHhhcc-cccEEEEEeeCCCCCchHH-HH
Q 015092 157 ---------------ICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGI-NADCIVVLVDACKAPERID-EI 215 (413)
Q Consensus 157 ---------------~~~~~~~~~~l~DtpG~~~~~----~~~l~~~~~~~~~~~~~-~aD~vl~VvD~~~~~~~~~-~~ 215 (413)
+..-....+.++||||+.... ...+...+.+.+..++. ..+++|+|+|+..++...+ ..
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 000111468999999996321 13345566677888888 4569999999987776555 45
Q ss_pred HHHHccccCCCCCEEEEEecCCCCCh
Q 015092 216 LEEGVGDHKDKLPILLVLNKKDLIKP 241 (413)
Q Consensus 216 l~~~l~~~~~~~p~ilV~NK~Dl~~~ 241 (413)
+.+.++. .+.|+++|+||+|..++
T Consensus 184 ia~~ld~--~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 184 LAKEVDP--QGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHH--cCCcEEEEEECCCCCCc
Confidence 6666665 68999999999999754
No 292
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.29 E-value=5.8e-11 Score=100.49 Aligned_cols=162 Identities=20% Similarity=0.209 Sum_probs=108.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC---CeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP---EYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
+..+|+++|.-+||||+++..|+..+....+....|..+...+.+..+ ..++.|.||.|+... .. +..+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~-~~-------eLpr 79 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG-QQ-------ELPR 79 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCc-hh-------hhhH
Confidence 456899999999999999999976665544444444444444444332 247899999998543 12 2245
Q ss_pred hhcccccEEEEEeeCCCCCchHHHH-HHHHccccC--CCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCC
Q 015092 191 SAGINADCIVVLVDACKAPERIDEI-LEEGVGDHK--DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~~~~~~~-l~~~l~~~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
.++.-+|+.++|++..++..-+.-. +...+.... ...|+++++||+|+..+..........-....-...+.++|..
T Consensus 80 hy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~d 159 (198)
T KOG3883|consen 80 HYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMD 159 (198)
T ss_pred hHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEecc
Confidence 6688999999999988764322222 222222221 5689999999999976544332222111112335689999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 015092 268 GHGVEDIRDWILTKLP 283 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~ 283 (413)
...+-+.+.++...+.
T Consensus 160 R~sL~epf~~l~~rl~ 175 (198)
T KOG3883|consen 160 RPSLYEPFTYLASRLH 175 (198)
T ss_pred chhhhhHHHHHHHhcc
Confidence 9999999999998775
No 293
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.28 E-value=5.9e-12 Score=116.39 Aligned_cols=125 Identities=22% Similarity=0.294 Sum_probs=77.0
Q ss_pred eeEEEEeCCCCch-hhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCch---HHHHHHH--HccccCCCCCEEEEEecC
Q 015092 163 YQMILYDTPGIIE-KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER---IDEILEE--GVGDHKDKLPILLVLNKK 236 (413)
Q Consensus 163 ~~~~l~DtpG~~~-~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~---~~~~l~~--~l~~~~~~~p~ilV~NK~ 236 (413)
.+.+++||||..+ .....-...+.+...+ ...-++++|+|..+...+ ....+.. ++-+ .+.|+|+|.||+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~las--s~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk--tklp~ivvfNK~ 191 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLAS--SFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK--TKLPFIVVFNKT 191 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhh--cCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh--ccCCeEEEEecc
Confidence 4589999999754 1122222223333322 345689999997654433 2333332 3333 789999999999
Q ss_pred CCCChhhHHHHHHHHH--------------------------hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCC
Q 015092 237 DLIKPGEIAKKLEWYE--------------------------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYP 290 (413)
Q Consensus 237 Dl~~~~~~~~~~~~~~--------------------------~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~ 290 (413)
|+.+..-..++...+. .++.....+.+||.+|.|.++++..+.+.+.+....|.
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~yk 271 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEYK 271 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHhh
Confidence 9987543332221111 11122367999999999999999999988766544443
Q ss_pred C
Q 015092 291 K 291 (413)
Q Consensus 291 ~ 291 (413)
+
T Consensus 272 p 272 (366)
T KOG1532|consen 272 P 272 (366)
T ss_pred h
Confidence 3
No 294
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.28 E-value=2.1e-11 Score=116.43 Aligned_cols=148 Identities=22% Similarity=0.202 Sum_probs=98.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceee----------ee----------------------CCCCceEEEEEEEEeCCCe
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSI----------VT----------------------NKPQTTRHRILGICSGPEY 163 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~----------vs----------------------~~~~tt~~~~~~~~~~~~~ 163 (413)
.+++-+|..+-|||||+-+|+....++ .+ ...|.|.+..+..+.....
T Consensus 7 LRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~KR 86 (431)
T COG2895 7 LRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEKR 86 (431)
T ss_pred eeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccccc
Confidence 488999999999999999998655432 11 1224555555555666677
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh-
Q 015092 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG- 242 (413)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~- 242 (413)
++.+.||||+.+ +.+.+....+-||++|++||+..+...++....-....+ .=+.+++++|||||.+-.
T Consensus 87 kFIiADTPGHeQ---------YTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL-GIrhvvvAVNKmDLvdy~e 156 (431)
T COG2895 87 KFIIADTPGHEQ---------YTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL-GIRHVVVAVNKMDLVDYSE 156 (431)
T ss_pred eEEEecCCcHHH---------HhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh-CCcEEEEEEeeecccccCH
Confidence 899999999643 334455556789999999999999866665432222220 235688899999998532
Q ss_pred -hHHHHHHH---HHhcCCC--ccEEEcccCCCCCHHH
Q 015092 243 -EIAKKLEW---YEKFTDV--DEVIPVSAKYGHGVED 273 (413)
Q Consensus 243 -~~~~~~~~---~~~~~~~--~~v~~iSA~~g~gv~~ 273 (413)
....+... +....++ ..++|+||+.|.|+-.
T Consensus 157 ~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 157 EVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 22222222 2222222 3679999999998843
No 295
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.26 E-value=7.6e-11 Score=114.66 Aligned_cols=152 Identities=21% Similarity=0.295 Sum_probs=90.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC------CceeeeeCCCCceE-------E-------------EEEEE----------
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTTR-------H-------------RILGI---------- 157 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~------~~~~~vs~~~~tt~-------~-------------~~~~~---------- 157 (413)
+...|+|+|.+|+|||||++.|.. .++..++-.+..+. + .+...
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGLS 112 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccchh
Confidence 456899999999999999999753 23332222211110 0 00000
Q ss_pred ---------EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCC
Q 015092 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (413)
Q Consensus 158 ---------~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p 228 (413)
+...++.++|+||||..+... ..+..+|.++++.+...+ .... .+...+ ..+|
T Consensus 113 ~~~~~~~~~l~~~g~D~viidT~G~~~~e~------------~i~~~aD~i~vv~~~~~~-~el~-~~~~~l----~~~~ 174 (300)
T TIGR00750 113 QATRELILLLDAAGYDVIIVETVGVGQSEV------------DIANMADTFVVVTIPGTG-DDLQ-GIKAGL----MEIA 174 (300)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCchhhh------------HHHHhhceEEEEecCCcc-HHHH-HHHHHH----hhhc
Confidence 112356799999999754221 125578999888654332 1111 111111 3578
Q ss_pred EEEEEecCCCCChhhHHHHH-------HHHHhc-CC-CccEEEcccCCCCCHHHHHHHHHhhCC
Q 015092 229 ILLVLNKKDLIKPGEIAKKL-------EWYEKF-TD-VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 229 ~ilV~NK~Dl~~~~~~~~~~-------~~~~~~-~~-~~~v~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
.++|+||+|+.......... ..+... .. ..+++++||++|.|+++|+++|.+...
T Consensus 175 ~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 175 DIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred cEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 89999999998654321111 111111 11 136899999999999999999988643
No 296
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.25 E-value=8.5e-12 Score=109.63 Aligned_cols=149 Identities=17% Similarity=0.107 Sum_probs=98.1
Q ss_pred HHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCC
Q 015092 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 189 ~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
.+.++.+||++++|+|++.+.......+.+.+.....++|+++|+||+|+.++.........+.....+ .++++||+++
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~-~~~~iSa~~~ 80 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPT-IAFHASINNP 80 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcE-EEEEeecccc
Confidence 356789999999999999876554555555554422458999999999998766555555566554333 2689999999
Q ss_pred CCHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CCCeeEEEE
Q 015092 269 HGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTAKDFIQV 342 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~~v~v~~~~~~------~~~~~~i~~ 342 (413)
.|+++|++.|.+.+..... ... -.++....+++|+||.+|.+.+... +|++ ....
T Consensus 81 ~~~~~L~~~l~~~~~~~~~----------~~~--------~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T-~~~~ 141 (157)
T cd01858 81 FGKGSLIQLLRQFSKLHSD----------KKQ--------ISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGET-KVWQ 141 (157)
T ss_pred ccHHHHHHHHHHHHhhhcc----------ccc--------eEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCee-EeEE
Confidence 9999999999876531100 000 0122345889999998887755332 3322 2221
Q ss_pred EEEEeeCCcceEEeecCC
Q 015092 343 EIVVEKNSQKIILIGKGG 360 (413)
Q Consensus 343 ~~~~~r~~~~~i~iG~~g 360 (413)
.+ ..++...+++++|
T Consensus 142 ~~---~~~~~~~liDtPG 156 (157)
T cd01858 142 YI---TLMKRIYLIDCPG 156 (157)
T ss_pred EE---EcCCCEEEEECcC
Confidence 22 1245578888887
No 297
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.25 E-value=1.2e-11 Score=110.40 Aligned_cols=118 Identities=28% Similarity=0.381 Sum_probs=65.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceee-eeCCCCceEEEEEEEE--eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~-vs~~~~tt~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
+.+.|.|+|++|+|||+|+..|....... +++. ....... ...+..+.++|+||+.. ++..+.+..
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-----e~n~~~~~~~~~~~~~~lvD~PGH~r-----lr~~~~~~~- 70 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-----ENNIAYNVNNSKGKKLRLVDIPGHPR-----LRSKLLDEL- 70 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---S-----SEEEECCGSSTCGTCECEEEETT-HC-----CCHHHHHHH-
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-----cCCceEEeecCCCCEEEEEECCCcHH-----HHHHHHHhh-
Confidence 34589999999999999999998764321 1111 1111111 12456899999999632 222222221
Q ss_pred hhcccccEEEEEeeCCCCC---chHHHHHHHHccc---cCCCCCEEEEEecCCCCChh
Q 015092 191 SAGINADCIVVLVDACKAP---ERIDEILEEGVGD---HKDKLPILLVLNKKDLIKPG 242 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~---~~~~~~l~~~l~~---~~~~~p~ilV~NK~Dl~~~~ 242 (413)
..+..+-+||||||++... ....+.+...+.. .....|+++++||.|+....
T Consensus 71 ~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 71 KYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp HHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred hchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 1367899999999987422 2222333333221 12678999999999997643
No 298
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=8.7e-11 Score=105.10 Aligned_cols=156 Identities=25% Similarity=0.320 Sum_probs=96.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
..|.++|..++|||+|+..|...... ...|...+..+.+..+.....++|.||+.. ++..+.+..... ..
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~----~TvtSiepn~a~~r~gs~~~~LVD~PGH~r-----lR~kl~e~~~~~-~~ 108 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHR----GTVTSIEPNEATYRLGSENVTLVDLPGHSR-----LRRKLLEYLKHN-YS 108 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCcc----CeeeeeccceeeEeecCcceEEEeCCCcHH-----HHHHHHHHcccc-cc
Confidence 47999999999999999999765322 222233444455555556689999999632 223332222221 37
Q ss_pred ccEEEEEeeCCCCC---chHHHHHHHHcccc---CCCCCEEEEEecCCCCChhhHHHHHHHHHh----------------
Q 015092 196 ADCIVVLVDACKAP---ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---------------- 253 (413)
Q Consensus 196 aD~vl~VvD~~~~~---~~~~~~l~~~l~~~---~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---------------- 253 (413)
+-.++||||+..-. ....+.+...+-.. ....|+++++||.|+..+...+.+.+.++.
T Consensus 109 akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~ 188 (238)
T KOG0090|consen 109 AKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSIS 188 (238)
T ss_pred ceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 88999999987543 33334444433322 267899999999999643221111111110
Q ss_pred ---------------------cC-CCccEEEcccCCCCCHHHHHHHHHhhC
Q 015092 254 ---------------------FT-DVDEVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 254 ---------------------~~-~~~~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
.. ....+.+.|+++| +++++.+||.+.+
T Consensus 189 ~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 189 DEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 00 1124678899888 8999999997653
No 299
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.24 E-value=1.4e-10 Score=106.64 Aligned_cols=151 Identities=19% Similarity=0.258 Sum_probs=85.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC-----ceeeeeCCCCceEEE---------EEEEE-------------------eC
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHR---------ILGIC-------------------SG 160 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~-----~~~~vs~~~~tt~~~---------~~~~~-------------------~~ 160 (413)
..+.|+++|++|+|||||+++++.. +.......++...+. +..+. ..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 3458999999999999999998653 122222222111000 00000 00
Q ss_pred CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCC
Q 015092 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (413)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~ 240 (413)
.+..+++++|.|....+.. .....+..+.|+|+.++...... .... ...|.++++||+|+..
T Consensus 101 ~~~d~IiIEt~G~l~~~~~------------~~~~~~~~i~Vvd~~~~d~~~~~----~~~~--~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCPAD------------FDLGEHMRVVLLSVTEGDDKPLK----YPGM--FKEADLIVINKADLAE 162 (207)
T ss_pred CCCCEEEEecCCCcCCCcc------------cccccCeEEEEEecCcccchhhh----hHhH--HhhCCEEEEEHHHccc
Confidence 1234566666662111100 01123444566666544322111 1111 3568899999999975
Q ss_pred h--hhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHHHHHHhhC
Q 015092 241 P--GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 241 ~--~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
. .........+....+..+++++||++|.|++++++++.++.
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 163 AVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred cchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3 22334444455545567899999999999999999998753
No 300
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=4.2e-11 Score=116.36 Aligned_cols=87 Identities=24% Similarity=0.308 Sum_probs=68.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC------------------eeEEEEeCCCCchhh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE------------------YQMILYDTPGIIEKK 177 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~------------------~~~~l~DtpG~~~~~ 177 (413)
.+++|||.||||||||+|+|+... +...++|.||.++..+++...+ ..+.|+|.+|++...
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 479999999999999999999998 5579999999998888743221 247899999997632
Q ss_pred --hhhHHHHHHHHHHhhcccccEEEEEeeCCC
Q 015092 178 --IHMLDSMMMKNVRSAGINADCIVVLVDACK 207 (413)
Q Consensus 178 --~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~ 207 (413)
...|...| +.-++.+|+++.|||+..
T Consensus 82 s~GeGLGNkF----L~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKF----LDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHH----HHhhhhcCeEEEEEEecC
Confidence 34455554 444679999999999873
No 301
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.22 E-value=8.3e-11 Score=118.84 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=109.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015092 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
..+..+|+++|..|+|||||+-+|+...+.. .-.+--.+..+..-++-+.....++||+.-.+ ... ....
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~-~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~-~~~--------~l~~ 75 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVD-AVPRRLPRILIPADVTPENVPTSIVDTSSDSD-DRL--------CLRK 75 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccc-cccccCCccccCCccCcCcCceEEEecccccc-hhH--------HHHH
Confidence 3466799999999999999999999988752 11111122222233444556789999985211 111 2344
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHccccC---CCCCEEEEEecCCCCChhhH--H-HHHHHHHhcCCCccEEEc
Q 015092 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEI--A-KKLEWYEKFTDVDEVIPV 263 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~---~~~p~ilV~NK~Dl~~~~~~--~-~~~~~~~~~~~~~~v~~i 263 (413)
.++.||++.+|++.+++. ......++-+++... .+.|+|+|+||+|....... + .....+.++......|.|
T Consensus 76 EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciec 155 (625)
T KOG1707|consen 76 EIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIEC 155 (625)
T ss_pred HHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhh
Confidence 468999999999877643 444555666677655 68999999999998643211 1 233334444445678999
Q ss_pred ccCCCCCHHHHHHHHHhhCC
Q 015092 264 SAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 264 SA~~g~gv~~L~~~l~~~l~ 283 (413)
||++..++.+++-+-.+.+-
T Consensus 156 SA~~~~n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 156 SALTLANVSELFYYAQKAVI 175 (625)
T ss_pred hhhhhhhhHhhhhhhhheee
Confidence 99999999999988777653
No 302
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.22 E-value=3.5e-12 Score=110.50 Aligned_cols=158 Identities=17% Similarity=0.197 Sum_probs=100.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeee-CCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs-~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
+..+++|+|..+|||||++.+++..-+..-. ...++..-.-...+..++..+.+|||+| ++.++.+ ...+
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtag--qeEfDaI-------tkAy 89 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAG--QEEFDAI-------TKAY 89 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhcc--chhHHHH-------HHHH
Confidence 4568999999999999999999854432100 0111110000011234456778999999 5555544 4566
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHH-HHHHHhcCCCccEEEcccCCCC
Q 015092 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~-~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
++.|.+.++|+..++.. +...+|....... -..+|.++|-||+|+.....+..- .+-+.+.. ....+.+|++...
T Consensus 90 yrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e-~~~IPtV~vqNKIDlveds~~~~~evE~lak~l-~~RlyRtSvked~ 167 (246)
T KOG4252|consen 90 YRGAQASVLVFSTTDRYSFEATLEWYNKVQKE-TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKL-HKRLYRTSVKEDF 167 (246)
T ss_pred hccccceEEEEecccHHHHHHHHHHHHHHHHH-hccCCeEEeeccchhhHhhhcchHHHHHHHHHh-hhhhhhhhhhhhh
Confidence 89999999999887653 3333333333222 267999999999999865433211 11111111 1357889999999
Q ss_pred CHHHHHHHHHhhC
Q 015092 270 GVEDIRDWILTKL 282 (413)
Q Consensus 270 gv~~L~~~l~~~l 282 (413)
|+..+|.+|++.+
T Consensus 168 NV~~vF~YLaeK~ 180 (246)
T KOG4252|consen 168 NVMHVFAYLAEKL 180 (246)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999998765
No 303
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.19 E-value=2.6e-10 Score=106.08 Aligned_cols=163 Identities=13% Similarity=0.110 Sum_probs=93.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEE-eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
+|.++|+.++||||+.+.+..+..+.-+...+.|.+.....+ ..+...+.+||+||.... ... .+..+....++.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~-~~~---~~~~~~~~if~~ 76 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDF-MEN---YFNSQREEIFSN 76 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCST-THT---THTCCHHHHHCT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccc-ccc---cccccHHHHHhc
Confidence 689999999999999999998765544455555554444444 356679999999996321 111 111223344789
Q ss_pred ccEEEEEeeCCC-CCchHHHHHH---HHccccCCCCCEEEEEecCCCCChhhHHHHH--------HHHHhcC-CCccEEE
Q 015092 196 ADCIVVLVDACK-APERIDEILE---EGVGDHKDKLPILLVLNKKDLIKPGEIAKKL--------EWYEKFT-DVDEVIP 262 (413)
Q Consensus 196 aD~vl~VvD~~~-~~~~~~~~l~---~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~--------~~~~~~~-~~~~v~~ 262 (413)
++++|||+|+.. ........+. ..+....++..+.+++.|+|+...+...... +...... ....++.
T Consensus 77 v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (232)
T PF04670_consen 77 VGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFL 156 (232)
T ss_dssp ESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred cCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEe
Confidence 999999999983 3332222222 2233334789999999999998654433221 1122211 1245788
Q ss_pred cccCCCCCHHHHHHHHHhhCCC
Q 015092 263 VSAKYGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 263 iSA~~g~gv~~L~~~l~~~l~~ 284 (413)
||--. ..+-+-+..++..+-+
T Consensus 157 TSI~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 157 TSIWD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp E-TTS-THHHHHHHHHHHTTST
T ss_pred ccCcC-cHHHHHHHHHHHHHcc
Confidence 88776 5777777777766643
No 304
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=7e-11 Score=101.45 Aligned_cols=155 Identities=23% Similarity=0.201 Sum_probs=100.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+.+++.++|--|+|||||++.|-..+... ...|.++....+..++..+..+|..|+.+. .+-+..++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~q----hvPTlHPTSE~l~Ig~m~ftt~DLGGH~qA---------rr~wkdyf 85 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQ----HVPTLHPTSEELSIGGMTFTTFDLGGHLQA---------RRVWKDYF 85 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccc----cCCCcCCChHHheecCceEEEEccccHHHH---------HHHHHHHH
Confidence 56799999999999999999997766542 233444445556678899999999996432 23366678
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHH---HHHHHhcC------------
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKK---LEWYEKFT------------ 255 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~---~~~~~~~~------------ 255 (413)
..+|.++++||+-+.. .+....+..++... -.+.|+++.+||+|.+.+....+. ...+....
T Consensus 86 ~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~ 165 (193)
T KOG0077|consen 86 PQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNV 165 (193)
T ss_pred hhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCC
Confidence 8999999999997653 22222222222111 157999999999999864322211 11111100
Q ss_pred CCccEEEcccCCCCCHHHHHHHHHhh
Q 015092 256 DVDEVIPVSAKYGHGVEDIRDWILTK 281 (413)
Q Consensus 256 ~~~~v~~iSA~~g~gv~~L~~~l~~~ 281 (413)
....+|.+|...+.|..+-+.|+..+
T Consensus 166 rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 166 RPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred CeEEEEEEEEEccCccceeeeehhhh
Confidence 11356888888888866666665543
No 305
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=4.6e-11 Score=115.82 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=88.1
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhCCceee-----------------eeCCCCceEEEEEEEEeCCCeeEEEEeCCC
Q 015092 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------------VTNKPQTTRHRILGICSGPEYQMILYDTPG 172 (413)
Q Consensus 110 ~~~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~-----------------vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG 172 (413)
++..+-.+|+|+.+.++||||...+|+.-...+ .....|.|.......+.|+|++++++||||
T Consensus 32 p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpg 111 (753)
T KOG0464|consen 32 PAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPG 111 (753)
T ss_pred CchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCC
Confidence 334455589999999999999999986433221 111223444444445789999999999999
Q ss_pred CchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCC
Q 015092 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (413)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~ 239 (413)
+++.... +.+.++.-|.++.|+|++.+.+.++..+|+...+ .++|.+..+||+|..
T Consensus 112 hvdf~le---------verclrvldgavav~dasagve~qtltvwrqadk--~~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 112 HVDFRLE---------VERCLRVLDGAVAVFDASAGVEAQTLTVWRQADK--FKIPAHCFINKMDKL 167 (753)
T ss_pred cceEEEE---------HHHHHHHhcCeEEEEeccCCcccceeeeehhccc--cCCchhhhhhhhhhh
Confidence 8764322 2233567899999999999999888888877766 789999999999985
No 306
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.17 E-value=4.5e-11 Score=111.13 Aligned_cols=149 Identities=20% Similarity=0.330 Sum_probs=86.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------CCceeeeeCCCCc--e------------------EEEEEEE----------
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQT--T------------------RHRILGI---------- 157 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~------~~~~~~vs~~~~t--t------------------~~~~~~~---------- 157 (413)
++.+|+|.|+||+|||||+++|. |.++....-.|.. | ...+...
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 56799999999999999999984 4454432222211 1 1112221
Q ss_pred ---------EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCC--chHHHHHHHHccccCCC
Q 015092 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDK 226 (413)
Q Consensus 158 ---------~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~ 226 (413)
+..-++.++|+.|.|..+.... ....||.+++|+-+..+. +....-+++
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~------------I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE-------- 167 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVD------------IADMADTVVLVLVPGLGDEIQAIKAGIME-------- 167 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHH------------HHTTSSEEEEEEESSTCCCCCTB-TTHHH--------
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHH------------HHHhcCeEEEEecCCCccHHHHHhhhhhh--------
Confidence 2234567999999998763221 146899999998776553 222222322
Q ss_pred CCEEEEEecCCCCChhhHHHH-HHHHHhcC-----CCccEEEcccCCCCCHHHHHHHHHhhC
Q 015092 227 LPILLVLNKKDLIKPGEIAKK-LEWYEKFT-----DVDEVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 227 ~p~ilV~NK~Dl~~~~~~~~~-~~~~~~~~-----~~~~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
.+-++|+||+|+...+..... ...+.... ...|++.+||.+|.|+++|.+.|.++.
T Consensus 168 iaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 168 IADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp H-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred hccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 355899999996544332222 22222111 135899999999999999999998754
No 307
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.16 E-value=3.7e-10 Score=116.97 Aligned_cols=125 Identities=18% Similarity=0.096 Sum_probs=80.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCC-CCceEEEEEEEEeCCCeeEEEEeCCCCchhhhh-hHHHHHHHHHHhh
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-PQTTRHRILGICSGPEYQMILYDTPGIIEKKIH-MLDSMMMKNVRSA 192 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~-~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-~l~~~~~~~~~~~ 192 (413)
+.+|+++|.+||||||++|+|++.....++.. ++||+. ........+.++.+|||||+.+.... .....+...+...
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 45899999999999999999999986655554 566654 33333456789999999999653211 1233444444444
Q ss_pred cc--cccEEEEEeeCCCCCc-hHHHHHHHHccc-cC--CCCCEEEEEecCCCCC
Q 015092 193 GI--NADCIVVLVDACKAPE-RIDEILEEGVGD-HK--DKLPILLVLNKKDLIK 240 (413)
Q Consensus 193 ~~--~aD~vl~VvD~~~~~~-~~~~~l~~~l~~-~~--~~~p~ilV~NK~Dl~~ 240 (413)
+. .+|++|||+....... ..+...++.+.. ++ --..+|||++..|...
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 44 5899999987643222 122223332222 11 2257899999999875
No 308
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.16 E-value=6.1e-11 Score=113.18 Aligned_cols=162 Identities=20% Similarity=0.197 Sum_probs=90.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC----ceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHH
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQ----KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~----~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~ 189 (413)
....|.|+|.||+|||||+++|++. ....+-.....|...... +...+.....+-|++..+ +...+...+
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~r-I~~~g~pvvqi~tG~~Ch-----l~a~mv~~A 176 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAAR-IRATGTPAIQVNTGKGCH-----LDAQMIADA 176 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHH-HHhcCCcEEEecCCCCCc-----CcHHHHHHH
Confidence 3458999999999999999887653 112222222222211111 112223444555544322 122233334
Q ss_pred HhhcccccEEEEEeeCCCCC-chHHHHHHHH-----cc---------ccC--CCCCEEEEEecCCCCC--hhhHHHHHHH
Q 015092 190 RSAGINADCIVVLVDACKAP-ERIDEILEEG-----VG---------DHK--DKLPILLVLNKKDLIK--PGEIAKKLEW 250 (413)
Q Consensus 190 ~~~~~~aD~vl~VvD~~~~~-~~~~~~l~~~-----l~---------~~~--~~~p~ilV~NK~Dl~~--~~~~~~~~~~ 250 (413)
...+...+.-+++++....+ .+....+... +. +.+ -..+-++|+||+|+.+ ..++......
T Consensus 177 l~~L~~~~~d~liIEnvGnLvcPa~fdlge~~~v~vlsV~eg~dkplKyp~~f~~ADIVVLNKiDLl~~~~~dle~~~~~ 256 (290)
T PRK10463 177 APRLPLDDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEGEDKPLKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIAC 256 (290)
T ss_pred HHHHhhcCCcEEEEECCCCccCCCccchhhceeEEEEECccccccchhccchhhcCcEEEEEhHHcCcccHHHHHHHHHH
Confidence 44444444444455544321 1000000000 00 000 2356799999999986 3356667777
Q ss_pred HHhcCCCccEEEcccCCCCCHHHHHHHHHhh
Q 015092 251 YEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (413)
Q Consensus 251 ~~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~ 281 (413)
+....+..+++++||++|+|+++|++||...
T Consensus 257 lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 257 AREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred HHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 7777778899999999999999999999764
No 309
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.16 E-value=1.6e-10 Score=108.52 Aligned_cols=115 Identities=28% Similarity=0.331 Sum_probs=56.9
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhc-ccccEEEEEeeCCCCCchH---HHHHHHHccccCCCCCEEEEEecCCCC
Q 015092 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAG-INADCIVVLVDACKAPERI---DEILEEGVGDHKDKLPILLVLNKKDLI 239 (413)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~-~~aD~vl~VvD~~~~~~~~---~~~l~~~l~~~~~~~p~ilV~NK~Dl~ 239 (413)
.+.++||||..+ ....+..+..-+...- ...=++++++|+..-.... ...+....-..+.+.|.|.|+||+|+.
T Consensus 92 ~y~l~DtPGQiE--lf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIE--LFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHH--HHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEE--EEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcc
Confidence 589999999543 3222332222222211 2345789999987543322 222222222222489999999999998
Q ss_pred ChhhHHHHHHHH---------------------H---hcCCCc-cEEEcccCCCCCHHHHHHHHHhh
Q 015092 240 KPGEIAKKLEWY---------------------E---KFTDVD-EVIPVSAKYGHGVEDIRDWILTK 281 (413)
Q Consensus 240 ~~~~~~~~~~~~---------------------~---~~~~~~-~v~~iSA~~g~gv~~L~~~l~~~ 281 (413)
+.. .....+++ . ...+.. +++++|+.+++|+.+|+..+-+.
T Consensus 170 ~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 170 SKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp -HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred cch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 732 11111111 1 112333 78999999999999999988654
No 310
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.12 E-value=4.1e-10 Score=95.58 Aligned_cols=168 Identities=21% Similarity=0.273 Sum_probs=110.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceee-eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~-vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
-+.+|+++|.+..|||||+-..++..... .....|..--.....+......+.+||..|. +. +.....-+
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~--~~-------~~n~lPia 89 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQ--RE-------FINMLPIA 89 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCc--Hh-------hhccCcee
Confidence 45699999999999999999998876531 1111121111111112223356789999994 22 33345556
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCC---Ch---hhHHHHHHHHHhcCCCccEEEcc
Q 015092 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLI---KP---GEIAKKLEWYEKFTDVDEVIPVS 264 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~---~~---~~~~~~~~~~~~~~~~~~v~~iS 264 (413)
..++-++||++|.+++. ....+|..+........+| |+|++|.|+. ++ ..+......+.+... .+.|++|
T Consensus 90 c~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mn-AsL~F~S 167 (205)
T KOG1673|consen 90 CKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMN-ASLFFCS 167 (205)
T ss_pred ecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhC-CcEEEee
Confidence 78899999999998765 4455555543332223344 7899999974 22 223333344444433 5899999
Q ss_pred cCCCCCHHHHHHHHHhhCCCCCCCCCCC
Q 015092 265 AKYGHGVEDIRDWILTKLPLGPAYYPKD 292 (413)
Q Consensus 265 A~~g~gv~~L~~~l~~~l~~~~~~~~~~ 292 (413)
+.+..|+..++..+...+..-+|..|..
T Consensus 168 ts~sINv~KIFK~vlAklFnL~~ti~~~ 195 (205)
T KOG1673|consen 168 TSHSINVQKIFKIVLAKLFNLPWTIPEI 195 (205)
T ss_pred ccccccHHHHHHHHHHHHhCCceecccc
Confidence 9999999999999999998888876654
No 311
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.11 E-value=3.8e-10 Score=111.27 Aligned_cols=162 Identities=20% Similarity=0.135 Sum_probs=91.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc----eeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQK----LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~----~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
.+|||+|.+|+|||||+|+|.|-. .+..+....||..+..... ..-..+.+||.||+.... .....++ +.+
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~-f~~~~Yl-~~~-- 110 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPN-FPPEEYL-KEV-- 110 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS---HHHHH-HHT--
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCC-CCHHHHH-HHc--
Confidence 489999999999999999998732 2222223344444433332 222469999999985432 2333333 222
Q ss_pred hcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCC------------Chhh-HHH----HHHHHHhc
Q 015092 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI------------KPGE-IAK----KLEWYEKF 254 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~------------~~~~-~~~----~~~~~~~~ 254 (413)
.+...|++|++.+ ..+...+.++...++. .++|+.+|-+|+|.. +.+. +.. ..+.+.+.
T Consensus 111 ~~~~yD~fiii~s--~rf~~ndv~La~~i~~--~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 111 KFYRYDFFIIISS--ERFTENDVQLAKEIQR--MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp TGGG-SEEEEEES--SS--HHHHHHHHHHHH--TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred cccccCEEEEEeC--CCCchhhHHHHHHHHH--cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 3678898888765 3466777778877777 789999999999961 0111 111 12222222
Q ss_pred C-CCccEEEcccCCC--CCHHHHHHHHHhhCCCCC
Q 015092 255 T-DVDEVIPVSAKYG--HGVEDIRDWILTKLPLGP 286 (413)
Q Consensus 255 ~-~~~~v~~iSA~~g--~gv~~L~~~l~~~l~~~~ 286 (413)
. .-.++|.+|+..- .....|.+.|...+|...
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 1 2347899998753 678899999999887643
No 312
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.10 E-value=2.3e-09 Score=103.05 Aligned_cols=133 Identities=14% Similarity=0.187 Sum_probs=77.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeC--------CCCce-EEEEEEEEeCCC--eeEEEEeCCCCchhh-----hh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN--------KPQTT-RHRILGICSGPE--YQMILYDTPGIIEKK-----IH 179 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~--------~~~tt-~~~~~~~~~~~~--~~~~l~DtpG~~~~~-----~~ 179 (413)
.+|.++|.+|+|||||+|.|++........ ...++ .......+..++ ..+.++||||+++.- ..
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~ 84 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE 84 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence 379999999999999999999877543321 11111 112222233333 368899999986521 12
Q ss_pred hHHHHHHHHHHhhc-------------ccccEEEEEeeCC-CCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH
Q 015092 180 MLDSMMMKNVRSAG-------------INADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (413)
Q Consensus 180 ~l~~~~~~~~~~~~-------------~~aD~vl~VvD~~-~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~ 245 (413)
.+..++..+...++ ...|+|||+++++ ++..+.+...+..+. ...++|-|+.|+|.....++.
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls---~~vNvIPvIaKaD~lt~~el~ 161 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLS---KRVNVIPVIAKADTLTPEELQ 161 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHT---TTSEEEEEESTGGGS-HHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhc---ccccEEeEEecccccCHHHHH
Confidence 22222222222211 2689999999986 567777766665554 468999999999999887776
Q ss_pred HHHHHH
Q 015092 246 KKLEWY 251 (413)
Q Consensus 246 ~~~~~~ 251 (413)
.....+
T Consensus 162 ~~k~~i 167 (281)
T PF00735_consen 162 AFKQRI 167 (281)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 313
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.09 E-value=1e-09 Score=103.46 Aligned_cols=156 Identities=22% Similarity=0.347 Sum_probs=94.6
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHh------CCceeeeeCCCCc--eEEEEEE---------------E---------
Q 015092 110 HPNHKSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQT--TRHRILG---------------I--------- 157 (413)
Q Consensus 110 ~~~~~~~~v~ivG~~~~GKSsLln~L~------~~~~~~vs~~~~t--t~~~~~~---------------~--------- 157 (413)
+..-+..+|+|.|.||+|||||+.+|. |.+++..+-.|.. |.-.+.+ +
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~l 125 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTL 125 (323)
T ss_pred hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccc
Confidence 334466799999999999999999984 4444443322221 1101100 0
Q ss_pred -------------EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccC
Q 015092 158 -------------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK 224 (413)
Q Consensus 158 -------------~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~ 224 (413)
+.--|+.+.|+.|-|..+..-. + ...||.+++|.=+.-+..-+ .+..-+
T Consensus 126 GGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~-I-----------~~~aDt~~~v~~pg~GD~~Q--~iK~Gi---- 187 (323)
T COG1703 126 GGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVD-I-----------ANMADTFLVVMIPGAGDDLQ--GIKAGI---- 187 (323)
T ss_pred hhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH-H-----------hhhcceEEEEecCCCCcHHH--HHHhhh----
Confidence 2223456899999998653211 1 45789999887654443222 111111
Q ss_pred CCCCEEEEEecCCCCChhhH----HHHHHHH----HhcCCCccEEEcccCCCCCHHHHHHHHHhhCC
Q 015092 225 DKLPILLVLNKKDLIKPGEI----AKKLEWY----EKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 225 ~~~p~ilV~NK~Dl~~~~~~----~~~~~~~----~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
-...-|+|+||.|+...+.. ...+... .......|++.+||.+|.|+++|++.|.++..
T Consensus 188 mEiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 188 MEIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred hhhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 23556899999997644221 1111111 12223468999999999999999999988654
No 314
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=4.5e-10 Score=116.27 Aligned_cols=114 Identities=24% Similarity=0.284 Sum_probs=85.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEE-------EEEE--------EeCCCeeEEEEeCCCCchhhhh
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR-------ILGI--------CSGPEYQMILYDTPGIIEKKIH 179 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~-------~~~~--------~~~~~~~~~l~DtpG~~~~~~~ 179 (413)
-.++|++.|.+.|||||++.|+..+..+-+.-.|+-|.. ..++ ...+++.+++||+||+.+.+
T Consensus 9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~-- 86 (887)
T KOG0467|consen 9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS-- 86 (887)
T ss_pred eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh--
Confidence 348999999999999999999887765544444433221 0111 22367889999999987633
Q ss_pred hHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCC
Q 015092 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (413)
Q Consensus 180 ~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~ 239 (413)
..+.++...||.++++||+..|...++..+++.... .+...++|+||+|+.
T Consensus 87 -------sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~--~~~~~~lvinkidrl 137 (887)
T KOG0467|consen 87 -------SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI--EGLKPILVINKIDRL 137 (887)
T ss_pred -------hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH--ccCceEEEEehhhhH
Confidence 346667889999999999999998888877765444 678889999999953
No 315
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.09 E-value=3.2e-10 Score=105.40 Aligned_cols=168 Identities=21% Similarity=0.111 Sum_probs=107.7
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHhCCceee--eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCch-----hhhhhH
Q 015092 109 SHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGICSGPEYQMILYDTPGIIE-----KKIHML 181 (413)
Q Consensus 109 ~~~~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~--vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~-----~~~~~l 181 (413)
+.|..+.+.++++|.+|||||||+|.++..+... .+.+++.|+...... -+..+.++|.||+.. +....+
T Consensus 130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~---v~~~~~~vDlPG~~~a~y~~~~~~d~ 206 (320)
T KOG2486|consen 130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH---VGKSWYEVDLPGYGRAGYGFELPADW 206 (320)
T ss_pred cCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee---ccceEEEEecCCcccccCCccCcchH
Confidence 4455567799999999999999999998876543 233666666544332 246789999999432 222212
Q ss_pred HHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhh------HHHHHHHHHhc-
Q 015092 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------IAKKLEWYEKF- 254 (413)
Q Consensus 182 ~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~------~~~~~~~~~~~- 254 (413)
.. +.+.+..--++--.+++++|++.+....+....+++.+ .+.|+.+|+||||....-. ...+...+...
T Consensus 207 ~~-~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge--~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 207 DK-FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE--NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred hH-hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh--cCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 11 11211111123345778899999998888888888877 8999999999999863211 11111111111
Q ss_pred CC----CccEEEcccCCCCCHHHHHHHHHhhC
Q 015092 255 TD----VDEVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 255 ~~----~~~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
.+ ..|.+.+|+.++.|++.|+-.+....
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred ccceeccCCceeeecccccCceeeeeehhhhh
Confidence 01 12446699999999999887766543
No 316
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.08 E-value=1.6e-10 Score=101.35 Aligned_cols=92 Identities=26% Similarity=0.184 Sum_probs=66.1
Q ss_pred HHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCC
Q 015092 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 189 ~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
.+..+.+||++|+|+|++++.......+...+.. .++|+++|+||+|+.+........ .+... ...+++++||++|
T Consensus 6 ~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~-~~~~~-~~~~~~~iSa~~~ 81 (156)
T cd01859 6 VRRIIKESDVVLEVLDARDPELTRSRKLERYVLE--LGKKLLIVLNKADLVPKEVLEKWK-SIKES-EGIPVVYVSAKER 81 (156)
T ss_pred HHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHH-HHHHh-CCCcEEEEEcccc
Confidence 4455678999999999987654444444444443 578999999999997543333222 22222 2247899999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 015092 269 HGVEDIRDWILTKLPL 284 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~~ 284 (413)
.|+++|++.|.+.++.
T Consensus 82 ~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 82 LGTKILRRTIKELAKI 97 (156)
T ss_pred ccHHHHHHHHHHHHhh
Confidence 9999999999998874
No 317
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=2.5e-10 Score=100.12 Aligned_cols=160 Identities=20% Similarity=0.242 Sum_probs=107.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceee-eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~-vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
..+++++|..|+||||++++.+...+.. ...+.|...+........+...+..|||.| ++.+..++.. ++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtag--qEk~gglrdg-------yy 80 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAG--QEKKGGLRDG-------YY 80 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeeccc--ceeecccccc-------cE
Confidence 3479999999999999999988776653 223334444444443344457899999999 4444333222 24
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCH
Q 015092 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv 271 (413)
-.+.++++++|.+... .....|...+.+.. .++|+++++||.|................ ....++.+||+++.|.
T Consensus 81 I~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~~k~k~v~~~rk--knl~y~~iSaksn~Nf 157 (216)
T KOG0096|consen 81 IQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARKVKAKPVSFHRK--KNLQYYEISAKSNYNF 157 (216)
T ss_pred EecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccccccccceeeec--ccceeEEeeccccccc
Confidence 5778899999987654 33344444444432 56999999999998654421111121111 2357899999999999
Q ss_pred HHHHHHHHhhCCCCC
Q 015092 272 EDIRDWILTKLPLGP 286 (413)
Q Consensus 272 ~~L~~~l~~~l~~~~ 286 (413)
..-+-|+...+..+|
T Consensus 158 ekPFl~LarKl~G~p 172 (216)
T KOG0096|consen 158 ERPFLWLARKLTGDP 172 (216)
T ss_pred ccchHHHhhhhcCCC
Confidence 999999999886554
No 318
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.08 E-value=2.4e-10 Score=105.02 Aligned_cols=156 Identities=26% Similarity=0.325 Sum_probs=113.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
+|+++|.|.+|||||+..|.+.... +..+.+||..++.+...+.+.++.+.|.||+.+...+.-. --+++....+-|
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~-vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkg--rg~qviavartc 137 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSE-VAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKG--RGKQVIAVARTC 137 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCc-cccccceeEEEecceEeccccceeeecCcchhcccccCCC--CccEEEEEeecc
Confidence 7999999999999999999997654 7889999999999999999999999999999764332111 112344556789
Q ss_pred cEEEEEeeCCCCCchH---HHH----------------------------------------------------------
Q 015092 197 DCIVVLVDACKAPERI---DEI---------------------------------------------------------- 215 (413)
Q Consensus 197 D~vl~VvD~~~~~~~~---~~~---------------------------------------------------------- 215 (413)
.++++|.|+..+...- ..+
T Consensus 138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT 217 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT 217 (358)
T ss_pred cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence 9999999997664210 000
Q ss_pred ---HHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHHHHHHhhC
Q 015092 216 ---LEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 216 ---l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
+...+...+...|.+.++||+|-..-+++. -.......+++||-++.|+++|++-+.+++
T Consensus 218 ~DdLIdvVegnr~yVp~iyvLNkIdsISiEELd-------ii~~iphavpISA~~~wn~d~lL~~mweyL 280 (358)
T KOG1487|consen 218 ADDLIDVVEGNRIYVPCIYVLNKIDSISIEELD-------IIYTIPHAVPISAHTGWNFDKLLEKMWEYL 280 (358)
T ss_pred hhhhhhhhccCceeeeeeeeecccceeeeeccc-------eeeeccceeecccccccchHHHHHHHhhcc
Confidence 000111111247889999999976544322 112334679999999999999999998876
No 319
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.07 E-value=2.2e-09 Score=95.49 Aligned_cols=147 Identities=19% Similarity=0.247 Sum_probs=88.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC---c--eeeeeCCCCc----------eEEEEEEEEeCCCe-----------------
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQ---K--LSIVTNKPQT----------TRHRILGICSGPEY----------------- 163 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~---~--~~~vs~~~~t----------t~~~~~~~~~~~~~----------------- 163 (413)
..|.+.|+||+|||+|+.+++.. + .+.+....-| ...++.++.+.++.
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~ 93 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD 93 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence 48999999999999999987532 2 2222222222 11222222222121
Q ss_pred ----eEEEEeCCC-CchhhhhhHHHHHHHHHHhhccccc-EEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCC
Q 015092 164 ----QMILYDTPG-IIEKKIHMLDSMMMKNVRSAGINAD-CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (413)
Q Consensus 164 ----~~~l~DtpG-~~~~~~~~l~~~~~~~~~~~~~~aD-~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~D 237 (413)
.++|+...| +.. + .+....| +-|+|+|++.|...-.. . ...-...-++|+||.|
T Consensus 94 ~~~~Dll~iEs~GNL~~-~-------------~sp~L~d~~~v~VidvteGe~~P~K-~-----gP~i~~aDllVInK~D 153 (202)
T COG0378 94 FPDLDLLFIESVGNLVC-P-------------FSPDLGDHLRVVVIDVTEGEDIPRK-G-----GPGIFKADLLVINKTD 153 (202)
T ss_pred CCcCCEEEEecCcceec-c-------------cCcchhhceEEEEEECCCCCCCccc-C-----CCceeEeeEEEEehHH
Confidence 355555555 211 1 1123445 78888888877432110 0 0000124589999999
Q ss_pred CCChh--hHHHHHHHHHhcCCCccEEEcccCCCCCHHHHHHHHHhhC
Q 015092 238 LIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 238 l~~~~--~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
+.+.- +++...+...+..+-.+++.+|+++|+|++++++++...+
T Consensus 154 La~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 154 LAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred hHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 97543 3355556666777778999999999999999999987653
No 320
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=5.3e-10 Score=113.99 Aligned_cols=118 Identities=23% Similarity=0.327 Sum_probs=82.4
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCceeeee----------CCCCceEEEEEEE--------E---eCCCeeEEEEe
Q 015092 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVT----------NKPQTTRHRILGI--------C---SGPEYQMILYD 169 (413)
Q Consensus 111 ~~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs----------~~~~tt~~~~~~~--------~---~~~~~~~~l~D 169 (413)
.+.+-.+|+++|+-.+|||+|++.|........+ +.....+++...+ + .....-++++|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 3445568999999999999999999876542110 0000111111111 1 12334589999
Q ss_pred CCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCC
Q 015092 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (413)
Q Consensus 170 tpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~ 239 (413)
|||++. |...+..+++.+|++++|||+..+..-..+.++...-+ .+.|+++|+||+|+.
T Consensus 204 TPGHVn---------F~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq--~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 204 TPGHVN---------FSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ--NRLPIVVVINKVDRL 262 (971)
T ss_pred CCCccc---------chHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh--ccCcEEEEEehhHHH
Confidence 999875 34556667889999999999999987777776665544 689999999999984
No 321
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.05 E-value=2.8e-09 Score=97.42 Aligned_cols=82 Identities=21% Similarity=0.198 Sum_probs=57.1
Q ss_pred ccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCCh--hhHHHHHHHHHhcCCCccEEEcccCCCCCHHH
Q 015092 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (413)
Q Consensus 196 aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~ 273 (413)
+|.++.|+|+.++...... ... . -...-++++||+|+.+. ..+....+......+..+++++||++|.|+++
T Consensus 113 ~~~~i~vvD~~~~~~~~~~-~~~---q--i~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~e 186 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPRK-GGP---G--ITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDT 186 (199)
T ss_pred hCcEEEEEEcchhhhhhhh-hHh---H--hhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHH
Confidence 5789999999875442211 111 1 12344899999999752 33444445555555667999999999999999
Q ss_pred HHHHHHhhCC
Q 015092 274 IRDWILTKLP 283 (413)
Q Consensus 274 L~~~l~~~l~ 283 (413)
++++|.+++.
T Consensus 187 l~~~i~~~~~ 196 (199)
T TIGR00101 187 VIDWIEHYAL 196 (199)
T ss_pred HHHHHHhhcC
Confidence 9999987653
No 322
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.02 E-value=5.1e-10 Score=101.46 Aligned_cols=95 Identities=25% Similarity=0.294 Sum_probs=65.4
Q ss_pred HHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHH-HHHHH-----Hhc-CCC
Q 015092 185 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWY-----EKF-TDV 257 (413)
Q Consensus 185 ~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~-~~~~~-----~~~-~~~ 257 (413)
+...+..++..+|++++|+|+++........+.. .. .++|+++|+||+|+........ ...+. ... ...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~--~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FG--GNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKP 99 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hc--CCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCc
Confidence 3455677789999999999998765443333322 12 4689999999999974332111 11111 111 122
Q ss_pred ccEEEcccCCCCCHHHHHHHHHhhCC
Q 015092 258 DEVIPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 258 ~~v~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
.+++++||++|.|+++|++.|.+.++
T Consensus 100 ~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 100 KDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46899999999999999999999886
No 323
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.02 E-value=3.1e-09 Score=96.73 Aligned_cols=133 Identities=17% Similarity=0.231 Sum_probs=84.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceee-------eeCCCCceEEEE-EEEEeCCCe--eEEEEeCCCCchh-----hhhh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-------VTNKPQTTRHRI-LGICSGPEY--QMILYDTPGIIEK-----KIHM 180 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~-------vs~~~~tt~~~~-~~~~~~~~~--~~~l~DtpG~~~~-----~~~~ 180 (413)
.+|.+||.+|.|||||+|.|....+.. ..+.+.||.-.. ..++..+++ +++++||||+++. ....
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWeP 126 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEP 126 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHH
Confidence 389999999999999999998765432 123445554333 333444544 5789999999762 2223
Q ss_pred HHHHHHHHHHhhc--------------ccccEEEEEeeCCC-CCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH
Q 015092 181 LDSMMMKNVRSAG--------------INADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (413)
Q Consensus 181 l~~~~~~~~~~~~--------------~~aD~vl~VvD~~~-~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~ 245 (413)
+..++.++...++ ..+++++|.+.++. .+.+.+.+++..+.+ -..++-|+-|.|-..-++..
T Consensus 127 I~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~---vvNvvPVIakaDtlTleEr~ 203 (336)
T KOG1547|consen 127 IEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE---VVNVVPVIAKADTLTLEERS 203 (336)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh---hheeeeeEeecccccHHHHH
Confidence 3333333333322 25899999998874 446666666554433 46788899999987665554
Q ss_pred HHHHHH
Q 015092 246 KKLEWY 251 (413)
Q Consensus 246 ~~~~~~ 251 (413)
...+.+
T Consensus 204 ~FkqrI 209 (336)
T KOG1547|consen 204 AFKQRI 209 (336)
T ss_pred HHHHHH
Confidence 444433
No 324
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.02 E-value=5.8e-10 Score=97.96 Aligned_cols=56 Identities=30% Similarity=0.412 Sum_probs=47.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCC
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~ 173 (413)
...|+++|.||||||||+|+|.+.....+++.+++|+....... +..+.++||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 34789999999999999999999999889999999988654322 235899999995
No 325
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.01 E-value=5e-09 Score=101.28 Aligned_cols=160 Identities=19% Similarity=0.233 Sum_probs=101.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceee--------eeC-----CCCceEEEEEEEEeC--------------------
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI--------VTN-----KPQTTRHRILGICSG-------------------- 160 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~--------vs~-----~~~tt~~~~~~~~~~-------------------- 160 (413)
....|+..||.++|||||+-.|+..+... ... ..+.|.+....++-.
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~v 195 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAV 195 (527)
T ss_pred ceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHh
Confidence 44589999999999999998885433110 000 011222222222111
Q ss_pred ---CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh-cccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecC
Q 015092 161 ---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA-GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKK 236 (413)
Q Consensus 161 ---~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~-~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~ 236 (413)
.+.-+.|+||.|+ +++ +....+.. -...|..++++-+++++...+.+-+..+-. -..|+|+|++|+
T Consensus 196 v~~aDklVsfVDtvGH--Epw------LrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a--~~lPviVvvTK~ 265 (527)
T COG5258 196 VKRADKLVSFVDTVGH--EPW------LRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALA--MELPVIVVVTKI 265 (527)
T ss_pred hhhcccEEEEEecCCc--cHH------HHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhh--hcCCEEEEEEec
Confidence 1234789999995 332 11111111 357899999999999998887776665544 689999999999
Q ss_pred CCCChhhHHHHHHHHHh---------------------------cCCCccEEEcccCCCCCHHHHHHHHHhhCCC
Q 015092 237 DLIKPGEIAKKLEWYEK---------------------------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 237 Dl~~~~~~~~~~~~~~~---------------------------~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~ 284 (413)
|+.+.+.+....+.+.. -....|+|.+|+.+|+|++-|.+.+. .+|.
T Consensus 266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~-~Lp~ 339 (527)
T COG5258 266 DMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL-LLPK 339 (527)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH-hCCc
Confidence 99876554433222221 11256999999999999987666654 4543
No 326
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.01 E-value=6.6e-10 Score=99.17 Aligned_cols=56 Identities=36% Similarity=0.434 Sum_probs=48.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCC
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~ 173 (413)
..+|+++|.||||||||+|+|++.+...++..||+|+......+ +.++.++||||+
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 35899999999999999999999998889999999998655443 246899999995
No 327
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.00 E-value=5.6e-10 Score=107.29 Aligned_cols=157 Identities=22% Similarity=0.246 Sum_probs=98.2
Q ss_pred HHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcc
Q 015092 185 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 264 (413)
Q Consensus 185 ~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iS 264 (413)
..+++...+..||++|+|+|+..+.......+.+.+ .++|+++|+||+|+.+........+.+... + .+++++|
T Consensus 11 ~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~-~-~~vi~iS 84 (276)
T TIGR03596 11 ARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR----GNKPRLIVLNKADLADPAVTKQWLKYFEEK-G-IKALAIN 84 (276)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH----CCCCEEEEEEccccCCHHHHHHHHHHHHHc-C-CeEEEEE
Confidence 345667778999999999999877655555555544 358999999999997654444444444331 2 4789999
Q ss_pred cCCCCCHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEe------cCCCee
Q 015092 265 AKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKT------RPTAKD 338 (413)
Q Consensus 265 A~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~~v~v~~~~~------~~~~~~ 338 (413)
|+++.|++.|++.|.+.++............... + +++-...+++|+||.+|.+.... .+|+ +
T Consensus 85 a~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~--------~--~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~-T 153 (276)
T TIGR03596 85 AKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRP--------I--RAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGV-T 153 (276)
T ss_pred CCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCC--------e--EEEEECCCCCCHHHHHHHHhCCCccccCCCCCe-e
Confidence 9999999999999988876432110000000000 0 23334578888888877654332 1332 2
Q ss_pred EEEEEEEEeeCCcceEEeecCCh
Q 015092 339 FIQVEIVVEKNSQKIILIGKGGK 361 (413)
Q Consensus 339 ~i~~~~~~~r~~~~~i~iG~~g~ 361 (413)
...+.+.+ +....++++.|-
T Consensus 154 ~~~~~~~~---~~~~~l~DtPG~ 173 (276)
T TIGR03596 154 KGQQWIKL---SDGLELLDTPGI 173 (276)
T ss_pred cceEEEEe---CCCEEEEECCCc
Confidence 22222222 346788898885
No 328
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=2e-08 Score=95.77 Aligned_cols=160 Identities=21% Similarity=0.196 Sum_probs=102.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC-------cee---e-----eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhh
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQ-------KLS---I-----VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~-------~~~---~-----vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 179 (413)
..+|+-+||.+.|||||.-+++.- ++. . .....|.|.......+......+--+||||+.+
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD---- 129 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD---- 129 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH----
Confidence 448999999999999999988521 110 0 111223344333333444456778899999654
Q ss_pred hHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCC-CCEEEEEecCCCCChhhHHHH-----HHHHHh
Q 015092 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLIKPGEIAKK-----LEWYEK 253 (413)
Q Consensus 180 ~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~-~p~ilV~NK~Dl~~~~~~~~~-----~~~~~~ 253 (413)
+.+.+.......|.+|+||.++++.-+++.+-+-+.++ -+ ..+++.+||.|+++..+..+. .+.+..
T Consensus 130 -----YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQ--VGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse 202 (449)
T KOG0460|consen 130 -----YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQ--VGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSE 202 (449)
T ss_pred -----HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHH--cCCceEEEEEecccccCCHHHHHHHHHHHHHHHHH
Confidence 34445555678899999999999998887776655565 34 456777999999955443222 222222
Q ss_pred ---cCCCccEEEcccCC---C----CC---HHHHHHHHHhhCCCC
Q 015092 254 ---FTDVDEVIPVSAKY---G----HG---VEDIRDWILTKLPLG 285 (413)
Q Consensus 254 ---~~~~~~v~~iSA~~---g----~g---v~~L~~~l~~~l~~~ 285 (413)
.....|++.-||+. | .| |..|++.+-+++|.+
T Consensus 203 ~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P 247 (449)
T KOG0460|consen 203 FGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTP 247 (449)
T ss_pred cCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCc
Confidence 22346888888763 3 12 566777777777654
No 329
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.97 E-value=4.2e-10 Score=98.69 Aligned_cols=147 Identities=21% Similarity=0.200 Sum_probs=87.7
Q ss_pred cEEEEEeeCCCCCchHHHHHH-HHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHH
Q 015092 197 DCIVVLVDACKAPERIDEILE-EGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (413)
Q Consensus 197 D~vl~VvD~~~~~~~~~~~l~-~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~ 275 (413)
|++|+|+|+..+......++. ..+.. .++|+++|+||+|+.+...+......+.... ..+++++||++|.|+++|+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~-~~~ii~vSa~~~~gi~~L~ 77 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE--KGKKLILVLNKADLVPKEVLRKWLAYLRHSY-PTIPFKISATNGQGIEKKE 77 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc--CCCCEEEEEechhcCCHHHHHHHHHHHHhhC-CceEEEEeccCCcChhhHH
Confidence 789999999887655444454 34444 6799999999999976654444333343332 3578999999999999999
Q ss_pred HHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CCCeeEEEEEEEEeeC
Q 015092 276 DWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTAKDFIQVEIVVEKN 349 (413)
Q Consensus 276 ~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~~v~v~~~~~~------~~~~~~i~~~~~~~r~ 349 (413)
+.|.+...+....+......... -.++-...+++|+|+.++.+..... ++++... ..+. .
T Consensus 78 ~~i~~~~~~~~~~~~~~~~~~~~----------~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~-~~~~---~ 143 (155)
T cd01849 78 SAFTKQTNSNLKSYAKDGKLKKS----------ITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ-QEVK---L 143 (155)
T ss_pred HHHHHHhHHHHHHHHhccccccC----------cEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce-EEEE---e
Confidence 99876543110000000000000 0122344788888887776655432 2322222 1122 2
Q ss_pred CcceEEeecCC
Q 015092 350 SQKIILIGKGG 360 (413)
Q Consensus 350 ~~~~i~iG~~g 360 (413)
.+...+++++|
T Consensus 144 ~~~~~liDtPG 154 (155)
T cd01849 144 DNKIKLLDTPG 154 (155)
T ss_pred cCCEEEEECCC
Confidence 35688888877
No 330
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=3.4e-09 Score=101.95 Aligned_cols=181 Identities=19% Similarity=0.201 Sum_probs=111.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceee------e-------eCCCCceEEEEEEE---------Ee------------C
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI------V-------TNKPQTTRHRILGI---------CS------------G 160 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~------v-------s~~~~tt~~~~~~~---------~~------------~ 160 (413)
..+|+++|..++|||||+-.|....... . .-..|.|......+ ++ .
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 3489999999999999998886443210 0 00111111111111 11 1
Q ss_pred CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc--ccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCC
Q 015092 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG--INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (413)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~--~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl 238 (413)
...-+.|+|.+|+.. + .+.....+ --.|.+++|+.+..+....+++-+.++.. .+.|++++++|+|+
T Consensus 247 SSKlvTfiDLAGh~k--Y-------~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~A--L~iPfFvlvtK~Dl 315 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAK--Y-------QKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAA--LNIPFFVLVTKMDL 315 (591)
T ss_pred hcceEEEeecccchh--h-------heeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHH--hCCCeEEEEEeecc
Confidence 123478999999533 1 11111111 25789999999999988777777777777 78999999999999
Q ss_pred CChhhHHHHHHHHHh----------------------------cCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCC
Q 015092 239 IKPGEIAKKLEWYEK----------------------------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYP 290 (413)
Q Consensus 239 ~~~~~~~~~~~~~~~----------------------------~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~ 290 (413)
..+..+....+.+.. ...+.|+|.+|..+|+|++-|...| ..+++......
T Consensus 316 ~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL-n~Lsp~~~~~e 394 (591)
T KOG1143|consen 316 VDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL-NCLSPAGTAEE 394 (591)
T ss_pred ccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH-hhcCCcCChHH
Confidence 877554443333221 2346799999999999998766655 44444333333
Q ss_pred CCccCCchhhHHHHHHH
Q 015092 291 KDIVSEHPERFFVGEII 307 (413)
Q Consensus 291 ~~~~t~~~~~~~~~eii 307 (413)
.+++...+-.|.+.|+.
T Consensus 395 ~~~L~q~~~eFqvdEiy 411 (591)
T KOG1143|consen 395 RIQLVQLPAEFQVDEIY 411 (591)
T ss_pred HHHHhcCcceeeHhHee
Confidence 33344445555555543
No 331
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.92 E-value=1.3e-09 Score=94.07 Aligned_cols=82 Identities=23% Similarity=0.172 Sum_probs=60.5
Q ss_pred HHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccC
Q 015092 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266 (413)
Q Consensus 187 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~ 266 (413)
+.++.++..||++++|+|++.+.......+.+.+.....++|+++|+||+|+..+.........+.... .+++++||+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~--~~ii~iSa~ 80 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEG--IVVVFFSAL 80 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcC--CeEEEEEec
Confidence 456777899999999999988776555555555554224789999999999986655554455554432 478999999
Q ss_pred CCCC
Q 015092 267 YGHG 270 (413)
Q Consensus 267 ~g~g 270 (413)
++.+
T Consensus 81 ~~~~ 84 (141)
T cd01857 81 KENA 84 (141)
T ss_pred CCCc
Confidence 9876
No 332
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.89 E-value=2.6e-09 Score=104.77 Aligned_cols=61 Identities=43% Similarity=0.587 Sum_probs=52.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~ 177 (413)
+..+|+++|.||||||||||+|++.+.+.++..||+|+....-.+. ..+.++||||+....
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~---~~i~LlDtPGii~~~ 191 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD---DGIYLLDTPGIIPPK 191 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC---CCeEEecCCCcCCCC
Confidence 4458999999999999999999999999999999999987765544 348999999997543
No 333
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.89 E-value=9.6e-09 Score=98.07 Aligned_cols=89 Identities=26% Similarity=0.299 Sum_probs=68.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC-----------------eeEEEEeCCCCchh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEK 176 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~ 176 (413)
..++++|||.||||||||+|+|+..... +...|.+|.++..+.+.... ..+.++|++|+...
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 3458999999999999999999999887 78999999998877644322 25899999999753
Q ss_pred h--hhhHHHHHHHHHHhhcccccEEEEEeeCCC
Q 015092 177 K--IHMLDSMMMKNVRSAGINADCIVVLVDACK 207 (413)
Q Consensus 177 ~--~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~ 207 (413)
. ...|...| ++-++.+|.++.||++..
T Consensus 98 As~G~GLGN~F----Ls~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 98 ASAGEGLGNKF----LSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcCchHHH----HHhhhhccceeEEEEecC
Confidence 2 23344444 455679999999998763
No 334
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.88 E-value=4.2e-09 Score=90.83 Aligned_cols=55 Identities=35% Similarity=0.577 Sum_probs=46.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGII 174 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~ 174 (413)
+++++|.+|+|||||+|+|++.....++..+++|++.....+ + ..+.+|||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL--T-PTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe--C-CCEEEEECCCcC
Confidence 799999999999999999999998888999999988654333 2 268999999974
No 335
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.84 E-value=8.1e-08 Score=93.11 Aligned_cols=134 Identities=15% Similarity=0.185 Sum_probs=86.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeee----CCC-----CceEEEEEEEEeCCCe--eEEEEeCCCCchh-----hh
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVT----NKP-----QTTRHRILGICSGPEY--QMILYDTPGIIEK-----KI 178 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs----~~~-----~tt~~~~~~~~~~~~~--~~~l~DtpG~~~~-----~~ 178 (413)
...|.++|..|.||||++|.|+++...... ..+ ..........+..++. +++++||||+++. .+
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~w 102 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCW 102 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccH
Confidence 348999999999999999999988443211 111 1112222333444444 5789999999762 22
Q ss_pred hhHHHHHHHHHHhhc--------------ccccEEEEEeeCC-CCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhh
Q 015092 179 HMLDSMMMKNVRSAG--------------INADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (413)
Q Consensus 179 ~~l~~~~~~~~~~~~--------------~~aD~vl~VvD~~-~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~ 243 (413)
..+-..+..+...++ ..+++|||.+.++ ++..+.+......+. ..+.+|-|+-|.|....++
T Consensus 103 e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls---~~vNlIPVI~KaD~lT~~E 179 (373)
T COG5019 103 EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLS---KRVNLIPVIAKADTLTDDE 179 (373)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHh---cccCeeeeeeccccCCHHH
Confidence 223333333333322 2589999999876 566777766665443 4688999999999998887
Q ss_pred HHHHHHHH
Q 015092 244 IAKKLEWY 251 (413)
Q Consensus 244 ~~~~~~~~ 251 (413)
+....+.+
T Consensus 180 l~~~K~~I 187 (373)
T COG5019 180 LAEFKERI 187 (373)
T ss_pred HHHHHHHH
Confidence 76554443
No 336
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.84 E-value=4.2e-09 Score=101.84 Aligned_cols=155 Identities=19% Similarity=0.214 Sum_probs=95.9
Q ss_pred HHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEccc
Q 015092 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (413)
Q Consensus 186 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA 265 (413)
.++....+..||++|+|+|+..+.......+...+ .++|+++|+||+|+.+..........+... ..+++++||
T Consensus 15 ~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~--~~~vi~vSa 88 (287)
T PRK09563 15 RREIKENLKLVDVVIEVLDARIPLSSENPMIDKII----GNKPRLLILNKSDLADPEVTKKWIEYFEEQ--GIKALAINA 88 (287)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHh----CCCCEEEEEEchhcCCHHHHHHHHHHHHHc--CCeEEEEEC
Confidence 45567778999999999999887655555555544 368999999999997654343444444332 246899999
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec------CCCeeE
Q 015092 266 KYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTAKDF 339 (413)
Q Consensus 266 ~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~~v~v~~~~~~------~~~~~~ 339 (413)
+++.|++.|++.|...++............... + +++-...+++|+|+.+|.+.+... +|.+..
T Consensus 89 ~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~--------~--~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~ 158 (287)
T PRK09563 89 KKGQGVKKILKAAKKLLKEKNERRKAKGMRPRA--------I--RAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA 158 (287)
T ss_pred CCcccHHHHHHHHHHHHHHHHhhhhhcccCcCc--------e--EEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEE
Confidence 999999999999988775321100000000000 0 123345788888888776654332 332222
Q ss_pred EEEEEEEeeCCcceEEeecCC
Q 015092 340 IQVEIVVEKNSQKIILIGKGG 360 (413)
Q Consensus 340 i~~~~~~~r~~~~~i~iG~~g 360 (413)
. +.+. .+....++++.|
T Consensus 159 ~-~~~~---~~~~~~l~DtPG 175 (287)
T PRK09563 159 Q-QWIK---LGKGLELLDTPG 175 (287)
T ss_pred E-EEEE---eCCcEEEEECCC
Confidence 2 2222 234577888888
No 337
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.83 E-value=6.5e-09 Score=91.10 Aligned_cols=57 Identities=40% Similarity=0.477 Sum_probs=48.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCC
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~ 173 (413)
+..+++++|.||+|||||+|+|++.....++..+++|+........ ..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCCC
Confidence 3458999999999999999999998877788899999987765442 56899999995
No 338
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=9.9e-09 Score=96.43 Aligned_cols=116 Identities=21% Similarity=0.344 Sum_probs=80.2
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCC-chHHHHHHHHccccCCCCCEEEEEecCCCCChh
Q 015092 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (413)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~-~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~ 242 (413)
.+.|+||||+ + .++..+.....-.|.+++++.++.+. ++++.+.+..+... .-+.++++-||+|+....
T Consensus 126 HVSfVDCPGH-D--------iLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM-~LkhiiilQNKiDli~e~ 195 (466)
T KOG0466|consen 126 HVSFVDCPGH-D--------ILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM-KLKHIIILQNKIDLIKES 195 (466)
T ss_pred EEEeccCCch-H--------HHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh-hhceEEEEechhhhhhHH
Confidence 4679999994 1 24455555556779999999887654 44433322222110 336789999999999766
Q ss_pred hHHHHHHHHHhc-----CCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCC
Q 015092 243 EIAKKLEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYY 289 (413)
Q Consensus 243 ~~~~~~~~~~~~-----~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~ 289 (413)
...+..+.+.++ ....|++|+||--++|++.+.++|++.+|.++..|
T Consensus 196 ~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf 247 (466)
T KOG0466|consen 196 QALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDF 247 (466)
T ss_pred HHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcccc
Confidence 554444444332 13469999999999999999999999999776654
No 339
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=4.8e-08 Score=94.06 Aligned_cols=131 Identities=21% Similarity=0.300 Sum_probs=82.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC-------------------------------
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE------------------------------- 162 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~------------------------------- 162 (413)
..|.|.++|.-..||||+++.|+.+.+.-..-.|..|.+....++.++.
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 4568999999999999999999998875322222222222222211110
Q ss_pred ----------eeEEEEeCCCCchhhhhhHHHH--HHHHHHhhcccccEEEEEeeCCCC-CchHHHHHHHHccccCCCCCE
Q 015092 163 ----------YQMILYDTPGIIEKKIHMLDSM--MMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPI 229 (413)
Q Consensus 163 ----------~~~~l~DtpG~~~~~~~~l~~~--~~~~~~~~~~~aD~vl~VvD~~~~-~~~~~~~l~~~l~~~~~~~p~ 229 (413)
.+++++||||+.......+... |.....-....||.|++++|+..- .......++..++. ..-.+
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG--~Edki 214 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG--HEDKI 214 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC--Cccee
Confidence 1489999999976332221110 112222236789999999998642 23444555556665 56778
Q ss_pred EEEEecCCCCChhhHHH
Q 015092 230 LLVLNKKDLIKPGEIAK 246 (413)
Q Consensus 230 ilV~NK~Dl~~~~~~~~ 246 (413)
-+|+||.|.++.+++..
T Consensus 215 RVVLNKADqVdtqqLmR 231 (532)
T KOG1954|consen 215 RVVLNKADQVDTQQLMR 231 (532)
T ss_pred EEEeccccccCHHHHHH
Confidence 89999999998877654
No 340
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.82 E-value=1.6e-08 Score=94.15 Aligned_cols=90 Identities=20% Similarity=0.147 Sum_probs=65.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC--ceeeeeCCCCceEEEEEEEEeC---CCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQ--KLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~--~~~~vs~~~~tt~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
..|+|+|++++|||+|+|.|++. .+........+|+......... .+..++++||||+.+..... ...+...
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~---~~~~~~~ 84 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE---FEDDARL 84 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc---hhhhhHH
Confidence 37999999999999999999999 7776667788888776666554 36889999999986533221 1122222
Q ss_pred hhcc--cccEEEEEeeCCCC
Q 015092 191 SAGI--NADCIVVLVDACKA 208 (413)
Q Consensus 191 ~~~~--~aD~vl~VvD~~~~ 208 (413)
.++. .+|++||.++....
T Consensus 85 ~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 85 FALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHhCEEEEeccCccc
Confidence 3333 48999999987543
No 341
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.81 E-value=7.2e-10 Score=96.96 Aligned_cols=156 Identities=17% Similarity=0.228 Sum_probs=107.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeee-eCCCCceEEEEEEEEeCCC---eeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPE---YQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~v-s~~~~tt~~~~~~~~~~~~---~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
++.|+|.-++|||+++.+.+...+..- ..+.| .+....++.+++ .++.|||..| ++.+..+ .+-+
T Consensus 27 k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIg--vdfalkVl~wdd~t~vRlqLwdIag--Qerfg~m-------trVy 95 (229)
T KOG4423|consen 27 KVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIG--VDFALKVLQWDDKTIVRLQLWDIAG--QERFGNM-------TRVY 95 (229)
T ss_pred hhheeeeccccchhHHHHHHHHHHHHHHHHHHh--HHHHHHHhccChHHHHHHHHhcchh--hhhhcce-------EEEE
Confidence 799999999999999999876655310 01111 112223344443 3567999999 4444433 5556
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHcccc----CCCCCEEEEEecCCCCChhhHH--HHHHHHHhcCCCccEEEcc
Q 015092 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVS 264 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~----~~~~p~ilV~NK~Dl~~~~~~~--~~~~~~~~~~~~~~v~~iS 264 (413)
++.+.++.+|+|.+++. +....|..++-... ....|+++..||||........ .....+.+..+|...+.+|
T Consensus 96 ykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets 175 (229)
T KOG4423|consen 96 YKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETS 175 (229)
T ss_pred ecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeec
Confidence 89999999999998765 34444444432221 1457889999999987543322 4556677777889999999
Q ss_pred cCCCCCHHHHHHHHHhhCC
Q 015092 265 AKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 265 A~~g~gv~~L~~~l~~~l~ 283 (413)
|+.+.++++..+.|++.+-
T Consensus 176 ~Kenkni~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 176 AKENKNIPEAQRELVEKIL 194 (229)
T ss_pred cccccChhHHHHHHHHHHH
Confidence 9999999999998887653
No 342
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.79 E-value=2.6e-08 Score=88.75 Aligned_cols=93 Identities=26% Similarity=0.349 Sum_probs=67.8
Q ss_pred HHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcc
Q 015092 185 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 264 (413)
Q Consensus 185 ~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iS 264 (413)
.+++++..+.+||++++|+|++.+.......+...+ .++|+++|+||+|+..........+.+... ...++++|
T Consensus 9 ~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~--~~~vi~iS 82 (171)
T cd01856 9 ALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----GNKPRIIVLNKADLADPKKTKKWLKYFESK--GEKVLFVN 82 (171)
T ss_pred HHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----cCCCEEEEEehhhcCChHHHHHHHHHHHhc--CCeEEEEE
Confidence 445667788999999999999876654333343333 357999999999997654433333333332 24689999
Q ss_pred cCCCCCHHHHHHHHHhhCC
Q 015092 265 AKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 265 A~~g~gv~~L~~~l~~~l~ 283 (413)
|+++.|+++|++.|...++
T Consensus 83 a~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 83 AKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CCCcccHHHHHHHHHHHHH
Confidence 9999999999999998764
No 343
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.79 E-value=7.2e-09 Score=93.90 Aligned_cols=56 Identities=41% Similarity=0.472 Sum_probs=45.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCce--------eeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCC
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKL--------SIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~--------~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~ 173 (413)
...++++|.||||||||+|+|++... ..++..|+||++.....+.. .+.++||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 45899999999999999999997542 34678899999987665532 5799999995
No 344
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.78 E-value=1.1e-08 Score=98.81 Aligned_cols=59 Identities=36% Similarity=0.518 Sum_probs=49.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCch
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~ 175 (413)
+..+|+++|.||||||||+|+|++.+...+++.|++|++.....+ +.++.++||||+..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 178 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL---GKGLELLDTPGILW 178 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe---CCcEEEEECCCcCC
Confidence 345899999999999999999999998889999999998754332 24689999999864
No 345
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.78 E-value=1.3e-08 Score=100.52 Aligned_cols=89 Identities=21% Similarity=0.166 Sum_probs=68.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC-----------------eeEEEEeCCCCchhhh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKI 178 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~~ 178 (413)
.+++|||.||+|||||+|+|++.....+..+|.||..+..+++...+ .++.++|.||+.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 47999999999999999999999874578889999988888766544 3689999999975322
Q ss_pred hhHHHHHHHHHHhhcccccEEEEEeeCC
Q 015092 179 HMLDSMMMKNVRSAGINADCIVVLVDAC 206 (413)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~vl~VvD~~ 206 (413)
.. ..+.......++.+|++++|+|+.
T Consensus 83 ~g--~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KG--EGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cc--cCcchHHHHHHHhCCEEEEEEeCC
Confidence 11 112233455678999999999985
No 346
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.77 E-value=1.9e-08 Score=96.79 Aligned_cols=59 Identities=37% Similarity=0.521 Sum_probs=49.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCch
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~ 175 (413)
+..+|+++|.||||||||+|+|.+.+...++..|++|+......+ + ..+.++||||+..
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~--~-~~~~l~DtPG~~~ 175 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL--S-DGLELLDTPGILW 175 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe--C-CCEEEEECCCccc
Confidence 345899999999999999999999998888999999998754333 2 3689999999854
No 347
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=1.4e-07 Score=92.12 Aligned_cols=133 Identities=16% Similarity=0.192 Sum_probs=85.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeee------eCCCCce--EEEEEEEEeCCCe--eEEEEeCCCCchh-----hhhh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV------TNKPQTT--RHRILGICSGPEY--QMILYDTPGIIEK-----KIHM 180 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~v------s~~~~tt--~~~~~~~~~~~~~--~~~l~DtpG~~~~-----~~~~ 180 (413)
..+.++|.+|.|||||+|.|+++....- +..+..| .......+..+|+ .++++||||+++. .+..
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~p 101 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRP 101 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchh
Confidence 4899999999999999999998754321 1122222 2222233444444 5789999999762 1222
Q ss_pred HHHHHHHHHHh-----------hcc--cccEEEEEeeCC-CCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHH
Q 015092 181 LDSMMMKNVRS-----------AGI--NADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (413)
Q Consensus 181 l~~~~~~~~~~-----------~~~--~aD~vl~VvD~~-~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~ 246 (413)
+......+... .+. .+++|||.+..+ +++.+.+..+...+. ....+|-|+-|.|...+.++..
T Consensus 102 i~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~---~~vNiIPVI~KaD~lT~~El~~ 178 (366)
T KOG2655|consen 102 IVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLS---KKVNLIPVIAKADTLTKDELNQ 178 (366)
T ss_pred hhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHh---ccccccceeeccccCCHHHHHH
Confidence 22222222222 233 789999999876 457787766665443 4789999999999998877765
Q ss_pred HHHHH
Q 015092 247 KLEWY 251 (413)
Q Consensus 247 ~~~~~ 251 (413)
....+
T Consensus 179 ~K~~I 183 (366)
T KOG2655|consen 179 FKKRI 183 (366)
T ss_pred HHHHH
Confidence 54443
No 348
>PRK12289 GTPase RsgA; Reviewed
Probab=98.73 E-value=1.6e-08 Score=100.08 Aligned_cols=85 Identities=24% Similarity=0.392 Sum_probs=61.6
Q ss_pred hhcccccEEEEEeeCCCCC-ch--HHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCC
Q 015092 191 SAGINADCIVVLVDACKAP-ER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~-~~--~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
.++.++|.+++|+|+.++. .. .+.++.. ... .++|+++|+||+|+.+..........+... ++ +++++||++
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~-a~~--~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~-g~-~v~~iSA~t 159 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVK-AES--TGLEIVLCLNKADLVSPTEQQQWQDRLQQW-GY-QPLFISVET 159 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHH-HHH--CCCCEEEEEEchhcCChHHHHHHHHHHHhc-CC-eEEEEEcCC
Confidence 3478999999999998653 22 2344332 233 579999999999998765544444555443 33 789999999
Q ss_pred CCCHHHHHHHHHh
Q 015092 268 GHGVEDIRDWILT 280 (413)
Q Consensus 268 g~gv~~L~~~l~~ 280 (413)
|.|+++|++.|..
T Consensus 160 g~GI~eL~~~L~~ 172 (352)
T PRK12289 160 GIGLEALLEQLRN 172 (352)
T ss_pred CCCHHHHhhhhcc
Confidence 9999999998864
No 349
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.73 E-value=1.5e-08 Score=100.91 Aligned_cols=119 Identities=23% Similarity=0.181 Sum_probs=70.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc-----eeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQK-----LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~-----~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
..|.++|.+|||||||+|+|++.. ...++..|+||+......+ +..+.++||||+... +.+...+.....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~~~--~~~~~~l~~~~l 229 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL---DDGHSLYDTPGIINS--HQMAHYLDKKDL 229 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe---CCCCEEEECCCCCCh--hHhhhhcCHHHH
Confidence 489999999999999999999853 3568899999998765443 234679999999642 222222211111
Q ss_pred h---hcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCCh
Q 015092 191 S---AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (413)
Q Consensus 191 ~---~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~ 241 (413)
. --.....+.+.+|..+...-........+.. .+..+.+.++|.+....
T Consensus 230 ~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~--~~~~~~~~~~~~~~~h~ 281 (360)
T TIGR03597 230 KYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKG--EKTSFTFYVSNELNIHR 281 (360)
T ss_pred hhcCCCCccCceEEEeCCCCEEEEceEEEEEEecC--CceEEEEEccCCceeEe
Confidence 1 1134456677776554321111111111222 34556667777666544
No 350
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.72 E-value=3.5e-08 Score=87.94 Aligned_cols=57 Identities=44% Similarity=0.542 Sum_probs=48.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCC
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~ 173 (413)
...+++++|.+|+|||||+|+|.+.....++..+++|+......+. ..+.++||||+
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3458999999999999999999998887788899999886654443 56899999996
No 351
>PF07650 KH_2: KH domain syndrome, contains KH motifs.; InterPro: IPR004044 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-2 KH domain include eukaryotic and prokaryotic S3 family of ribosomal proteins, and the prokaryotic GTP-binding protein, era.; GO: 0003723 RNA binding; PDB: 2XR1_B 3OAR_C 3OFX_C 1VS7_C 3I1O_C 2WWL_C 3R8O_C 2QAL_C 3J00_C 3J0V_F ....
Probab=98.65 E-value=2.9e-08 Score=76.64 Aligned_cols=52 Identities=44% Similarity=0.682 Sum_probs=49.6
Q ss_pred EEEEeeCCcceEEeecCChHHHHHHHHHHHHHHHHhCCcEEEEEEEEeCCCcc
Q 015092 343 EIVVEKNSQKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWR 395 (413)
Q Consensus 343 ~~~~~r~~~~~i~iG~~g~~ik~i~~~a~~~l~~~~~~~v~l~l~vkv~~~w~ 395 (413)
.+++.+.+|..++||++|++|++|+..++++|+.+++++|+|+++ +|++.||
T Consensus 27 ~~i~i~~~~~~ivIGk~G~~ik~i~~~~~k~l~~~~~~~V~l~v~-~V~~~~~ 78 (78)
T PF07650_consen 27 IIIVIKASQPGIVIGKKGSNIKKIREELRKELEKLLNKKVFLNVV-KVKKPWR 78 (78)
T ss_dssp EEEEEEESSHHHHHTGGGHHHHHHHHHHHHHHHHHCSSSEEEEEE-EESSCGG
T ss_pred EEEEEeCCCccHhHHhhhHHHHHHHHHHHHHHhhcCCCcEEEEEE-EecCCCC
Confidence 466788999999999999999999999999999999999999999 9999997
No 352
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.62 E-value=1.4e-07 Score=93.97 Aligned_cols=92 Identities=29% Similarity=0.297 Sum_probs=63.3
Q ss_pred HHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh----hHHHHHHHHHhcCCC--ccE
Q 015092 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEV 260 (413)
Q Consensus 187 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~----~~~~~~~~~~~~~~~--~~v 260 (413)
+....+...++++++|+|+.+........+.+.+ .+.|+++|+||+|+.... .+......+....++ ..+
T Consensus 55 ~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i 130 (360)
T TIGR03597 55 NLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDI 130 (360)
T ss_pred HHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcE
Confidence 3445556789999999999876655555555443 367999999999997432 222222111222233 258
Q ss_pred EEcccCCCCCHHHHHHHHHhhC
Q 015092 261 IPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 261 ~~iSA~~g~gv~~L~~~l~~~l 282 (413)
+.+||++|.|+++|++.|.+..
T Consensus 131 ~~vSAk~g~gv~eL~~~l~~~~ 152 (360)
T TIGR03597 131 ILVSAKKGNGIDELLDKIKKAR 152 (360)
T ss_pred EEecCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999997753
No 353
>PRK12289 GTPase RsgA; Reviewed
Probab=98.57 E-value=7.5e-08 Score=95.29 Aligned_cols=56 Identities=36% Similarity=0.352 Sum_probs=43.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCC-------ceEEEEEEEEeCCCeeEEEEeCCCCch
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-------TTRHRILGICSGPEYQMILYDTPGIIE 175 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~-------tt~~~~~~~~~~~~~~~~l~DtpG~~~ 175 (413)
.++|+|.||||||||+|+|++.....+...++ ||++.....+..+ ..++||||+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccc
Confidence 58999999999999999999887766666666 7877744433322 27999999854
No 354
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.56 E-value=1.5e-06 Score=87.76 Aligned_cols=119 Identities=18% Similarity=0.256 Sum_probs=70.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh------CCceeeeeCCCC-----------ceEE--EEEEEEeC---------------
Q 015092 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQ-----------TTRH--RILGICSG--------------- 160 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~------~~~~~~vs~~~~-----------tt~~--~~~~~~~~--------------- 160 (413)
+..|+++|.+||||||++..|. |.++..++..+. ..+. +.......
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999985 556555543321 1111 11111111
Q ss_pred -CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCC
Q 015092 161 -PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (413)
Q Consensus 161 -~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~ 239 (413)
.++.++|+||||..+.. ..+-..+.... . ...+|.++||+|++.+..... ..+.... .-.+.-+|+||+|-.
T Consensus 180 ~~~~DvViIDTaGr~~~d-~~lm~El~~i~-~-~~~p~e~lLVlda~~Gq~a~~--~a~~F~~--~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQE-DSLFEEMLQVA-E-AIQPDNIIFVMDGSIGQAAEA--QAKAFKD--SVDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcch-HHHHHHHHHHh-h-hcCCcEEEEEeccccChhHHH--HHHHHHh--ccCCcEEEEECccCC
Confidence 25689999999965432 22222222222 2 336789999999987643322 2222222 234678999999976
Q ss_pred C
Q 015092 240 K 240 (413)
Q Consensus 240 ~ 240 (413)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 4
No 355
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.56 E-value=3.1e-07 Score=88.64 Aligned_cols=164 Identities=20% Similarity=0.271 Sum_probs=100.4
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCcee----------------eee--------------------CCCCce--EE
Q 015092 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLS----------------IVT--------------------NKPQTT--RH 152 (413)
Q Consensus 111 ~~~~~~~v~ivG~~~~GKSsLln~L~~~~~~----------------~vs--------------------~~~~tt--~~ 152 (413)
.++-..+|++||..++|||||+-.|+..... +.+ .+|... .-
T Consensus 129 ~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~L 208 (641)
T KOG0463|consen 129 KDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNL 208 (641)
T ss_pred ccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcc
Confidence 3445569999999999999999877533211 001 011000 00
Q ss_pred EEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEE
Q 015092 153 RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLV 232 (413)
Q Consensus 153 ~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV 232 (413)
....++.....-+.|||.+|+ +.+-...- ....-+..|..+++|-++.+.-..+.+.+.+.-. ...|+++|
T Consensus 209 dWvkIce~saKviTFIDLAGH--EkYLKTTv-----FGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALa--L~VPVfvV 279 (641)
T KOG0463|consen 209 DWVKICEDSAKVITFIDLAGH--EKYLKTTV-----FGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALA--LHVPVFVV 279 (641)
T ss_pred cceeeccccceeEEEEeccch--hhhhheee-----eccccCCCCceEEEecccccceeccHHhhhhhhh--hcCcEEEE
Confidence 111223333345889999995 32211000 1112356899999999988875555544444333 67999999
Q ss_pred EecCCCCChhhHHHHHHHHHhc----------------------------CCCccEEEcccCCCCCHHHHHHHHHhhCCC
Q 015092 233 LNKKDLIKPGEIAKKLEWYEKF----------------------------TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 233 ~NK~Dl~~~~~~~~~~~~~~~~----------------------------~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~ 284 (413)
++|+|.++..-+.+....+... ...+|+|.+|-.+|.|++-|..+ ++.++.
T Consensus 280 VTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF-LNlls~ 358 (641)
T KOG0463|consen 280 VTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF-LNLLSL 358 (641)
T ss_pred EEeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH-HhhcCc
Confidence 9999999887666554443321 12469999999999999765544 455543
No 356
>PRK12288 GTPase RsgA; Reviewed
Probab=98.54 E-value=1.3e-07 Score=93.43 Aligned_cols=56 Identities=29% Similarity=0.333 Sum_probs=41.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCC-------ceEEEEEEEEeCCCeeEEEEeCCCCch
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-------TTRHRILGICSGPEYQMILYDTPGIIE 175 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~-------tt~~~~~~~~~~~~~~~~l~DtpG~~~ 175 (413)
.++++|.||||||||+|+|++.....+...++ ||+......+..+ ..++||||+..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~ 269 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVRE 269 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCc
Confidence 58999999999999999999987665555443 6666554444333 25999999855
No 357
>PRK13796 GTPase YqeH; Provisional
Probab=98.53 E-value=1.3e-07 Score=94.32 Aligned_cols=57 Identities=42% Similarity=0.507 Sum_probs=45.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc-----eeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCch
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQK-----LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~-----~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~ 175 (413)
..+.+||.||||||||+|+|++.. ...++..||||+..+...+.. ...++||||+..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~---~~~l~DTPGi~~ 222 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD---GSFLYDTPGIIH 222 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC---CcEEEECCCccc
Confidence 479999999999999999998542 344789999999876544432 258999999853
No 358
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.53 E-value=2e-07 Score=81.62 Aligned_cols=56 Identities=36% Similarity=0.552 Sum_probs=44.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCC
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~ 173 (413)
..+++++|.+|+|||||+|+|.+.....+++.+++|+..... .. +..+.+|||||+
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~--~~-~~~~~~~DtpGi 156 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLV--KI-TSKIYLLDTPGV 156 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEE--Ec-CCCEEEEECcCC
Confidence 457899999999999999999988777678888888664322 22 237899999995
No 359
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.51 E-value=7.6e-07 Score=78.36 Aligned_cols=117 Identities=20% Similarity=0.329 Sum_probs=68.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc----eeeeeCCCCce----------EEEEEEE----------------E----e--
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQK----LSIVTNKPQTT----------RHRILGI----------------C----S-- 159 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~----~~~vs~~~~tt----------~~~~~~~----------------~----~-- 159 (413)
|.+.++|..|+|||||++.++... ........+.. ....... + .
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~~ 80 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERL 80 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHHH
Confidence 367899999999999999987652 11111111100 0011111 0 0
Q ss_pred ---CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchH--HHHHHHHccccCCCCCEEEEEe
Q 015092 160 ---GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI--DEILEEGVGDHKDKLPILLVLN 234 (413)
Q Consensus 160 ---~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~--~~~l~~~l~~~~~~~p~ilV~N 234 (413)
....+..++||||+.+ +...+...+..........+|.+++++|+.+..... ...+..++. ..-++|+|
T Consensus 81 ~~~~~~~d~I~IEt~G~~~-p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~-----~ad~ivln 154 (158)
T cd03112 81 DAGKIAFDRIVIETTGLAD-PGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIA-----FADRILLN 154 (158)
T ss_pred HhccCCCCEEEEECCCcCC-HHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHH-----HCCEEEEe
Confidence 1245789999999864 444444444444555667899999999986543221 122233332 23477999
Q ss_pred cCCC
Q 015092 235 KKDL 238 (413)
Q Consensus 235 K~Dl 238 (413)
|+|+
T Consensus 155 k~dl 158 (158)
T cd03112 155 KTDL 158 (158)
T ss_pred cccC
Confidence 9996
No 360
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.49 E-value=2.8e-07 Score=83.71 Aligned_cols=122 Identities=15% Similarity=0.176 Sum_probs=85.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeC-CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
.+|.++|.+|+||||+=-.+..+..+.-...+|.|.+...+.+.. ++.-+.+||+.|. +. -+...+..+-...+.
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgq--e~--fmen~~~~q~d~iF~ 80 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQ--EE--FMENYLSSQEDNIFR 80 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCc--HH--HHHHHHhhcchhhhe
Confidence 389999999999999877777666665667788888877776654 4477899999993 32 233344434445578
Q ss_pred cccEEEEEeeCCCCCchH----HHHHHHHccccCCCCCEEEEEecCCCCCh
Q 015092 195 NADCIVVLVDACKAPERI----DEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~~~----~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~ 241 (413)
+.+++++|+|+....-.. .+..++.+.+..+...++..+.|+|+...
T Consensus 81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred eheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhccc
Confidence 999999999998653211 12222333333367889999999999754
No 361
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.5e-06 Score=89.93 Aligned_cols=145 Identities=26% Similarity=0.293 Sum_probs=84.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEE--------------------------------------
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL-------------------------------------- 155 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~-------------------------------------- 155 (413)
+..+|+|.|+.++||||++|+++..++.. +...+||--...
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP-~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLP-SGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCc-ccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 44589999999999999999998776542 222222211100
Q ss_pred ------EEEeCCC------eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHcccc
Q 015092 156 ------GICSGPE------YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH 223 (413)
Q Consensus 156 ------~~~~~~~------~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~ 223 (413)
.++-.++ ..+.++|.||+.-. ......+-....++|++|||+.+.+........+......
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~------se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~- 259 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVD------SELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSE- 259 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCc------hhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhc-
Confidence 0000011 14889999998321 1122334444679999999999877664444434333333
Q ss_pred CCCCCEEEEEecCCCCCh--hhHHHHHHHHHhcC------CCccEEEcccCC
Q 015092 224 KDKLPILLVLNKKDLIKP--GEIAKKLEWYEKFT------DVDEVIPVSAKY 267 (413)
Q Consensus 224 ~~~~p~ilV~NK~Dl~~~--~~~~~~~~~~~~~~------~~~~v~~iSA~~ 267 (413)
.+..++++.||+|.... +..+....++.... -...+|++||+.
T Consensus 260 -~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 260 -EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred -cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 35567778889998643 22222223322211 124689999773
No 362
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.48 E-value=2.4e-07 Score=82.63 Aligned_cols=56 Identities=27% Similarity=0.325 Sum_probs=42.8
Q ss_pred cEEEEEeeCCCCCchHHHHHHHH--ccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhc
Q 015092 197 DCIVVLVDACKAPERIDEILEEG--VGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF 254 (413)
Q Consensus 197 D~vl~VvD~~~~~~~~~~~l~~~--l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~ 254 (413)
|++++|+|+..+.......+.+. +.. .++|+++|+||+|+.++..+......+...
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~--~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~ 58 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAG--GNKKLVLVLNKIDLVPKENVEKWLKYLRRE 58 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhcc--CCCCEEEEEehhhcCCHHHHHHHHHHHHhh
Confidence 79999999998776655556555 434 578999999999998877766666666553
No 363
>PRK13796 GTPase YqeH; Provisional
Probab=98.48 E-value=5.4e-07 Score=90.01 Aligned_cols=91 Identities=25% Similarity=0.250 Sum_probs=61.8
Q ss_pred HHhhccccc-EEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh----hHHHHHHHHHhcCCC--ccEE
Q 015092 189 VRSAGINAD-CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEVI 261 (413)
Q Consensus 189 ~~~~~~~aD-~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~----~~~~~~~~~~~~~~~--~~v~ 261 (413)
....+..+| ++++|+|+.+........+.+.. .+.|+++|+||+|+.+.. .+......+....++ ..++
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~ 137 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVV 137 (365)
T ss_pred HHHhhcccCcEEEEEEECccCCCchhHHHHHHh----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEE
Confidence 344456666 99999999876555555454433 368999999999997532 222222222222232 3689
Q ss_pred EcccCCCCCHHHHHHHHHhhCC
Q 015092 262 PVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 262 ~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
.+||++|.|+++|++.|.+...
T Consensus 138 ~vSAk~g~gI~eL~~~I~~~~~ 159 (365)
T PRK13796 138 LISAQKGHGIDELLEAIEKYRE 159 (365)
T ss_pred EEECCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999987643
No 364
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=1.5e-06 Score=87.89 Aligned_cols=135 Identities=19% Similarity=0.257 Sum_probs=87.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceee-eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~-vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
.+..|++||+||+|||||+..|+..-... .....| + ..++.....+++|+.||. + + .++...
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----P-iTvvsgK~RRiTflEcp~--D-----l-----~~miDv 130 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----P-ITVVSGKTRRITFLECPS--D-----L-----HQMIDV 130 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----c-eEEeecceeEEEEEeChH--H-----H-----HHHHhH
Confidence 34478899999999999999987532211 111111 1 123344557899999995 2 1 122333
Q ss_pred cccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEE-EEecCCCCChh-hHHHHHH-----HHHhcCCCccEEEccc
Q 015092 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILL-VLNKKDLIKPG-EIAKKLE-----WYEKFTDVDEVIPVSA 265 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~il-V~NK~Dl~~~~-~~~~~~~-----~~~~~~~~~~v~~iSA 265 (413)
..-||+||++||+.-+++-.+-.+++++.. .+.|.++ |++..|+.... .+..... .....+.....|.+|.
T Consensus 131 aKIaDLVlLlIdgnfGfEMETmEFLnil~~--HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsg 208 (1077)
T COG5192 131 AKIADLVLLLIDGNFGFEMETMEFLNILIS--HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSG 208 (1077)
T ss_pred HHhhheeEEEeccccCceehHHHHHHHHhh--cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecc
Confidence 567999999999999998888888888776 6777655 89999997543 2222222 1223334456788876
Q ss_pred CC
Q 015092 266 KY 267 (413)
Q Consensus 266 ~~ 267 (413)
..
T Consensus 209 V~ 210 (1077)
T COG5192 209 VE 210 (1077)
T ss_pred cc
Confidence 54
No 365
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.46 E-value=2.4e-07 Score=87.52 Aligned_cols=56 Identities=30% Similarity=0.289 Sum_probs=40.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeee---eC----CCCceEEEEEEEEeCCCeeEEEEeCCCCch
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV---TN----KPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~v---s~----~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~ 175 (413)
..++++|++|||||||+|+|++.....+ +. ..+||++.....+ .+ -.++||||+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~---~~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HG---GLIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CC---cEEEeCCCccc
Confidence 3799999999999999999998764432 22 2347777655444 22 37999999865
No 366
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.46 E-value=6.8e-07 Score=84.39 Aligned_cols=84 Identities=23% Similarity=0.371 Sum_probs=61.0
Q ss_pred hcccccEEEEEeeCCCCC---chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCC
Q 015092 192 AGINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~---~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
+++++|.+++|+|++++. ...+.++. .+.. .+.|+++|+||+|+....... .....+.. .+ .+++.+||++
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~-~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~-~g-~~v~~~SAkt 107 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLDRFLV-VAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRN-IG-YQVLMTSSKN 107 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHHHHHH-HHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHH-CC-CeEEEEecCC
Confidence 478999999999998654 23444443 3333 679999999999997544332 33344444 23 4799999999
Q ss_pred CCCHHHHHHHHHh
Q 015092 268 GHGVEDIRDWILT 280 (413)
Q Consensus 268 g~gv~~L~~~l~~ 280 (413)
|.|+++|++.+..
T Consensus 108 g~gi~eLf~~l~~ 120 (245)
T TIGR00157 108 QDGLKELIEALQN 120 (245)
T ss_pred chhHHHHHhhhcC
Confidence 9999999998864
No 367
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.44 E-value=5.8e-08 Score=94.20 Aligned_cols=64 Identities=28% Similarity=0.398 Sum_probs=52.8
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh
Q 015092 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (413)
Q Consensus 111 ~~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~ 177 (413)
++.+...|++||+||+||||++|.|...+++.|.+.||.|....+..+. .+|.+|||||++-.+
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLm---krIfLIDcPGvVyps 366 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLM---KRIFLIDCPGVVYPS 366 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHH---hceeEecCCCccCCC
Confidence 3556678999999999999999999999999999999999865433222 578999999987533
No 368
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=2.9e-07 Score=91.77 Aligned_cols=112 Identities=25% Similarity=0.301 Sum_probs=78.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEE--------------EE-----------------EeCCCeeE
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--------------GI-----------------CSGPEYQM 165 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~--------------~~-----------------~~~~~~~~ 165 (413)
++.++.|.+.|||||.+.|+....-+.+...|.||..-. .+ -...++-+
T Consensus 21 NmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLi 100 (842)
T KOG0469|consen 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLI 100 (842)
T ss_pred cceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeE
Confidence 688999999999999999987654433344443322110 11 11234568
Q ss_pred EEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCC
Q 015092 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (413)
Q Consensus 166 ~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~ 239 (413)
++||.||+++.+ ..+-.+++..|.+|+|||..++.-.+++.++...-. .++.-++|+||+|+.
T Consensus 101 NLIDSPGHVDFS---------SEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~--ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 101 NLIDSPGHVDFS---------SEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA--ERIKPVLVMNKMDRA 163 (842)
T ss_pred EeccCCCcccch---------hhhhheeEeccCcEEEEEccCceEechHHHHHHHHH--hhccceEEeehhhHH
Confidence 999999987743 345667899999999999999987666666554333 455567899999973
No 369
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.35 E-value=9.8e-06 Score=79.35 Aligned_cols=149 Identities=15% Similarity=0.232 Sum_probs=81.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC------CceeeeeCCCCc-----------eEEEEEEEE------------------e
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQT-----------TRHRILGIC------------------S 159 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~------~~~~~vs~~~~t-----------t~~~~~~~~------------------~ 159 (413)
...++++|++|+||||++..|.+ .++..+...+.. .+..+..+. .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 44899999999999999988743 233333221110 011011110 1
Q ss_pred CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh-----cccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEe
Q 015092 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA-----GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 234 (413)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~-----~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~N 234 (413)
..++.++++||||..+.....+ ..+. .+... -..++-+++|+|++.+.....+ .....+ .-.+.-+|+|
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~-~eL~-~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~-a~~f~~---~~~~~giIlT 267 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLM-EELK-KIKRVIKKADPDAPHEVLLVLDATTGQNALSQ-AKAFHE---AVGLTGIILT 267 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHH-HHHH-HHHHHHhhhcCCCCceEEEEEECCCChHHHHH-HHHHHh---hCCCCEEEEE
Confidence 2346799999999754332222 2221 11111 1347789999999976544332 222211 1245689999
Q ss_pred cCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHH
Q 015092 235 KKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (413)
Q Consensus 235 K~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~ 275 (413)
|+|....-. ......... + .|+.+++ +|+++++|.
T Consensus 268 KlD~t~~~G--~~l~~~~~~-~-~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 268 KLDGTAKGG--VVFAIADEL-G-IPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCCCCcc--HHHHHHHHH-C-CCEEEEe--CCCChhhCc
Confidence 999653321 122222222 2 4788887 788887753
No 370
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.35 E-value=3.9e-07 Score=79.87 Aligned_cols=57 Identities=30% Similarity=0.370 Sum_probs=35.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceee---eeC----CCCceEEEEEEEEeCCCeeEEEEeCCCCch
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSI---VTN----KPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~---vs~----~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~ 175 (413)
..++++|++|||||||+|+|++..... ++. -.+||+......+. ....++||||+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~---~g~~iIDTPGf~~ 99 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLP---DGGYIIDTPGFRS 99 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEET---TSEEEECSHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecC---CCcEEEECCCCCc
Confidence 489999999999999999999874322 222 23455554444432 2458999999754
No 371
>PRK12288 GTPase RsgA; Reviewed
Probab=98.34 E-value=9.1e-07 Score=87.55 Aligned_cols=84 Identities=26% Similarity=0.379 Sum_probs=58.5
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhh---HHHHHHHHHhcCCCccEEEcccCC
Q 015092 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
..++|.+++|++..... ...+.++. .... .++|.++|+||+|+.+... .......+... + .+++++||++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~-~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~-g-~~v~~vSA~t 192 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLV-ACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNI-G-YRVLMVSSHT 192 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHH-HHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhC-C-CeEEEEeCCC
Confidence 57899999999876443 23344443 3333 5789999999999976432 22233333332 2 4899999999
Q ss_pred CCCHHHHHHHHHhh
Q 015092 268 GHGVEDIRDWILTK 281 (413)
Q Consensus 268 g~gv~~L~~~l~~~ 281 (413)
+.|+++|++.|...
T Consensus 193 g~GideL~~~L~~k 206 (347)
T PRK12288 193 GEGLEELEAALTGR 206 (347)
T ss_pred CcCHHHHHHHHhhC
Confidence 99999999998653
No 372
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=1.3e-06 Score=85.31 Aligned_cols=155 Identities=17% Similarity=0.172 Sum_probs=93.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCceee------------------------ee------CCCCceEEEEEEEEeCC
Q 015092 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSI------------------------VT------NKPQTTRHRILGICSGP 161 (413)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~------------------------vs------~~~~tt~~~~~~~~~~~ 161 (413)
.....++.++|+..+||||+-..|+...... .. ...+.|.......+...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 3455689999999999999877664332110 11 12234444455556666
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCc-------hHHHHHHHHccccCCCCCEEEEEe
Q 015092 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-------RIDEILEEGVGDHKDKLPILLVLN 234 (413)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~-------~~~~~l~~~l~~~~~~~p~ilV~N 234 (413)
...+.+.|+||+- ++ ...+......||+.++|+.+..+.. .++..-..+.+.. .-...|+++|
T Consensus 156 ~~~ftiLDApGHk--~f-------v~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-gv~~lVv~vN 225 (501)
T KOG0459|consen 156 NKRFTILDAPGHK--SF-------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVKHLIVLIN 225 (501)
T ss_pred ceeEEeeccCccc--cc-------chhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-ccceEEEEEE
Confidence 6789999999953 32 2234444678999999999875431 1223222222321 4577899999
Q ss_pred cCCCCChhh----HHH----HHHHHHh--cCCC--ccEEEcccCCCCCHHHHHH
Q 015092 235 KKDLIKPGE----IAK----KLEWYEK--FTDV--DEVIPVSAKYGHGVEDIRD 276 (413)
Q Consensus 235 K~Dl~~~~~----~~~----~~~~~~~--~~~~--~~v~~iSA~~g~gv~~L~~ 276 (413)
|+|-...+. ..+ ....+.. +..+ ..++++|..+|.++.+..+
T Consensus 226 KMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 226 KMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred eccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 999863221 111 1122221 1111 3469999999999988665
No 373
>PRK00098 GTPase RsgA; Reviewed
Probab=98.29 E-value=2.7e-06 Score=82.74 Aligned_cols=82 Identities=26% Similarity=0.382 Sum_probs=57.6
Q ss_pred cccccEEEEEeeCCCCCc--h-HHHHHHHHccccCCCCCEEEEEecCCCCC-hhhHHHHHHHHHhcCCCccEEEcccCCC
Q 015092 193 GINADCIVVLVDACKAPE--R-IDEILEEGVGDHKDKLPILLVLNKKDLIK-PGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~--~-~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~-~~~~~~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
+.++|++++|+|+.++.. . .+.++. .+.. .++|+++|+||+|+.. ..........+... + .+++++||++|
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~-~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~-g-~~v~~vSA~~g 152 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLV-LAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRAI-G-YDVLELSAKEG 152 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHH-HHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHC-C-CeEEEEeCCCC
Confidence 689999999999976532 2 233333 3344 6799999999999963 33333333444333 3 47999999999
Q ss_pred CCHHHHHHHHH
Q 015092 269 HGVEDIRDWIL 279 (413)
Q Consensus 269 ~gv~~L~~~l~ 279 (413)
.|+++|++.|.
T Consensus 153 ~gi~~L~~~l~ 163 (298)
T PRK00098 153 EGLDELKPLLA 163 (298)
T ss_pred ccHHHHHhhcc
Confidence 99999998874
No 374
>PRK01889 GTPase RsgA; Reviewed
Probab=98.28 E-value=2.5e-06 Score=84.95 Aligned_cols=83 Identities=22% Similarity=0.241 Sum_probs=58.7
Q ss_pred cccccEEEEEeeCCCCCch-HHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCH
Q 015092 193 GINADCIVVLVDACKAPER-IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~~-~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv 271 (413)
..++|.+++|+++..++.. ..+.++..+.. .+.|.++|+||+|+.+... ....++.......+++++||++|.|+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~--~~i~piIVLNK~DL~~~~~--~~~~~~~~~~~g~~Vi~vSa~~g~gl 185 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE--SGAEPVIVLTKADLCEDAE--EKIAEVEALAPGVPVLAVSALDGEGL 185 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH--cCCCEEEEEEChhcCCCHH--HHHHHHHHhCCCCcEEEEECCCCccH
Confidence 5789999999999755543 33344444444 5788899999999976421 12233333333468999999999999
Q ss_pred HHHHHHHH
Q 015092 272 EDIRDWIL 279 (413)
Q Consensus 272 ~~L~~~l~ 279 (413)
++|..+|.
T Consensus 186 ~~L~~~L~ 193 (356)
T PRK01889 186 DVLAAWLS 193 (356)
T ss_pred HHHHHHhh
Confidence 99999885
No 375
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.28 E-value=1.2e-06 Score=83.71 Aligned_cols=59 Identities=32% Similarity=0.391 Sum_probs=41.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCcee---eeeCC----CCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLS---IVTNK----PQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~---~vs~~----~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (413)
....+++|++|||||||+|+|.+.... .+|.. -+||++.....+..+| .++||||+...
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 347999999999999999999875432 23333 3566666555554333 58999998653
No 376
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.25 E-value=3.5e-06 Score=81.49 Aligned_cols=83 Identities=25% Similarity=0.343 Sum_probs=58.7
Q ss_pred cccccEEEEEeeCCCCC---chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCC
Q 015092 193 GINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~---~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
+.++|++++|+|+..+. ...+.++. .+.. .++|+++|+||+|+.+..........+.. .+ .+++++||++|.
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~-~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~-~g-~~v~~vSA~~g~ 150 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLV-AAEA--AGIEPVIVLTKADLLDDEEEELELVEALA-LG-YPVLAVSAKTGE 150 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHH-HHHH--cCCCEEEEEEHHHCCChHHHHHHHHHHHh-CC-CeEEEEECCCCc
Confidence 78999999999998775 23344333 3333 57999999999999765332222222322 23 489999999999
Q ss_pred CHHHHHHHHHh
Q 015092 270 GVEDIRDWILT 280 (413)
Q Consensus 270 gv~~L~~~l~~ 280 (413)
|+++|+..|..
T Consensus 151 gi~~L~~~L~~ 161 (287)
T cd01854 151 GLDELREYLKG 161 (287)
T ss_pred cHHHHHhhhcc
Confidence 99999988763
No 377
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.24 E-value=3.3e-05 Score=74.05 Aligned_cols=149 Identities=17% Similarity=0.220 Sum_probs=80.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh------CCceeeeeCCCCc-----------eEEEEEEEE------------------e
Q 015092 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQT-----------TRHRILGIC------------------S 159 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~------~~~~~~vs~~~~t-----------t~~~~~~~~------------------~ 159 (413)
...++++|++|+||||++-.|. |.++..++..+.. .+....... .
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~ 151 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAK 151 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3479999999999999888774 3333333322100 000011000 1
Q ss_pred CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc-----ccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEe
Q 015092 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG-----INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 234 (413)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~-----~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~N 234 (413)
..++.++++||||..+.... +...+ +.+.... ..+|.+++|+|++.+..... ......+. -.+.-+|+|
T Consensus 152 ~~~~D~ViIDT~G~~~~d~~-~~~el-~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~-~~~~f~~~---~~~~g~IlT 225 (272)
T TIGR00064 152 ARNIDVVLIDTAGRLQNKVN-LMDEL-KKIKRVIKKVDKDAPDEVLLVLDATTGQNALE-QAKVFNEA---VGLTGIILT 225 (272)
T ss_pred HCCCCEEEEeCCCCCcchHH-HHHHH-HHHHHHHhcccCCCCceEEEEEECCCCHHHHH-HHHHHHhh---CCCCEEEEE
Confidence 24568999999997542211 11111 1112222 24899999999986543332 22222222 235688999
Q ss_pred cCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHH
Q 015092 235 KKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (413)
Q Consensus 235 K~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~ 275 (413)
|+|-...-. ......... + .|+.+++ +|+++++|.
T Consensus 226 KlDe~~~~G--~~l~~~~~~-~-~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 226 KLDGTAKGG--IILSIAYEL-K-LPIKFIG--VGEKIDDLA 260 (272)
T ss_pred ccCCCCCcc--HHHHHHHHH-C-cCEEEEe--CCCChHhCc
Confidence 999864321 112222222 2 4777777 788877653
No 378
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.22 E-value=5.2e-07 Score=88.09 Aligned_cols=62 Identities=34% Similarity=0.438 Sum_probs=51.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh
Q 015092 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~ 177 (413)
.++.+|+|+|.|||||||+||+|...+.+.+...||.|+...... -+..|.|+|.||+.-.+
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~---Ldk~i~llDsPgiv~~~ 311 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK---LDKKIRLLDSPGIVPPS 311 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee---ccCCceeccCCceeecC
Confidence 456799999999999999999999999999999999998754433 23679999999986533
No 379
>PRK00098 GTPase RsgA; Reviewed
Probab=98.22 E-value=1.8e-06 Score=84.02 Aligned_cols=57 Identities=32% Similarity=0.314 Sum_probs=39.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCC-------CceEEEEEEEEeCCCeeEEEEeCCCCch
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-------QTTRHRILGICSGPEYQMILYDTPGIIE 175 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~-------~tt~~~~~~~~~~~~~~~~l~DtpG~~~ 175 (413)
..++++|++|||||||+|+|++.....+.... +||+......+.. ...++||||+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~---~~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG---GGLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC---CcEEEECCCcCc
Confidence 47999999999999999999987654332222 3665544333332 247899999864
No 380
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.20 E-value=1.4e-05 Score=78.15 Aligned_cols=155 Identities=21% Similarity=0.368 Sum_probs=94.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc----eeeeeCCCC-----------ceEEEEEEE------Ee---------------
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQK----LSIVTNKPQ-----------TTRHRILGI------CS--------------- 159 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~----~~~vs~~~~-----------tt~~~~~~~------~~--------------- 159 (413)
|...|.|.=|+|||||+|.|+.+. ++..-+..| .+...+... |+
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 357788999999999999997543 332111111 111111111 11
Q ss_pred CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHH---HHHHHHccccCCCCCEEEEEecC
Q 015092 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID---EILEEGVGDHKDKLPILLVLNKK 236 (413)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~---~~l~~~l~~~~~~~p~ilV~NK~ 236 (413)
.+....++|-|-|+.+. ...+...+........-..|.++-|||+.+-..... +....++ ...-++|+||+
T Consensus 82 ~~~~D~ivIEtTGlA~P-~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi-----a~AD~ivlNK~ 155 (323)
T COG0523 82 RDRPDRLVIETTGLADP-APVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL-----AFADVIVLNKT 155 (323)
T ss_pred cCCCCEEEEeCCCCCCC-HHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH-----HhCcEEEEecc
Confidence 22346789999999653 222323222222233346788999999987654332 2333333 33568999999
Q ss_pred CCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHHHH
Q 015092 237 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDW 277 (413)
Q Consensus 237 Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~~ 277 (413)
|+.++..+......+....+..+++.+|. .+.+...++..
T Consensus 156 Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~~ 195 (323)
T COG0523 156 DLVDAEELEALEARLRKLNPRARIIETSY-GDVDLAELLDE 195 (323)
T ss_pred cCCCHHHHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhcc
Confidence 99998877777788888888889999887 44555554443
No 381
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.17 E-value=5.2e-06 Score=80.27 Aligned_cols=57 Identities=35% Similarity=0.406 Sum_probs=39.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeee---e----CCCCceEEEEEEEEeCCCeeEEEEeCCCCch
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV---T----NKPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~v---s----~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~ 175 (413)
..++++|++|||||||+|+|++.....+ + ...+||+......+... ..++||||+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCc
Confidence 4799999999999999999998764432 2 12346666544333322 36899999843
No 382
>PRK14974 cell division protein FtsY; Provisional
Probab=98.15 E-value=4.1e-05 Score=75.39 Aligned_cols=149 Identities=16% Similarity=0.202 Sum_probs=79.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC------CceeeeeCCCC---ce--------E--EEEEEE----------------E
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQ---TT--------R--HRILGI----------------C 158 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~------~~~~~vs~~~~---tt--------~--~~~~~~----------------~ 158 (413)
++..|+++|.+|+||||++..|.. .++..+..... .. . ...... .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 345899999999999997777642 22322221110 00 0 000000 0
Q ss_pred eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCC
Q 015092 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (413)
Q Consensus 159 ~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl 238 (413)
...+..++++||||..+.....+ ..+ +.... ....|.+++|+|+..+..... ........ -..--+++||+|.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm-~eL-~~i~~-~~~pd~~iLVl~a~~g~d~~~-~a~~f~~~---~~~~giIlTKlD~ 291 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLM-DEL-KKIVR-VTKPDLVIFVGDALAGNDAVE-QAREFNEA---VGIDGVILTKVDA 291 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHH-HHH-HHHHH-hhCCceEEEeeccccchhHHH-HHHHHHhc---CCCCEEEEeeecC
Confidence 11245699999999764332222 222 12222 235789999999976532221 12222111 2346789999998
Q ss_pred CChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHH
Q 015092 239 IKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (413)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~ 275 (413)
...-.. .+...... ..|+.+++ +|+++++|.
T Consensus 292 ~~~~G~--~ls~~~~~--~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 292 DAKGGA--ALSIAYVI--GKPILFLG--VGQGYDDLI 322 (336)
T ss_pred CCCccH--HHHHHHHH--CcCEEEEe--CCCChhhcc
Confidence 643221 11222221 24788877 789987764
No 383
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.11 E-value=6e-06 Score=78.55 Aligned_cols=62 Identities=37% Similarity=0.442 Sum_probs=49.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC-----CceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIG-----QKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~-----~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (413)
...|.|+|.||+|||||+|++.. .+.+.+...||.|+.....+.-.....+.++||||+...
T Consensus 143 ~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P 209 (335)
T KOG2485|consen 143 EYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVP 209 (335)
T ss_pred ceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCC
Confidence 35899999999999999999842 345668899999998766554455567899999998654
No 384
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=2.4e-05 Score=77.88 Aligned_cols=124 Identities=17% Similarity=0.257 Sum_probs=67.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC--------ceeeeeCCC----------------CceEEEEEE-------EEeCCC
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQ--------KLSIVTNKP----------------QTTRHRILG-------ICSGPE 162 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~--------~~~~vs~~~----------------~tt~~~~~~-------~~~~~~ 162 (413)
+...++++|++||||||++.+|... ++..++... +........ .....+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 4458999999999999999998532 222222111 100000000 011245
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccC-C----CCCEEEEEecCC
Q 015092 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK-D----KLPILLVLNKKD 237 (413)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~-~----~~p~ilV~NK~D 237 (413)
..+++|||||..+... .+.+.+ ... .....++-.++|++++.+.....+.+........ + ..+.=++++|.|
T Consensus 216 ~DlVLIDTaG~~~~d~-~l~e~L-a~L-~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlD 292 (374)
T PRK14722 216 KHMVLIDTIGMSQRDR-TVSDQI-AML-HGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLD 292 (374)
T ss_pred CCEEEEcCCCCCcccH-HHHHHH-HHH-hccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccc
Confidence 6899999999753221 122211 111 1223455678999999877666655544432200 0 013467889999
Q ss_pred CCC
Q 015092 238 LIK 240 (413)
Q Consensus 238 l~~ 240 (413)
-..
T Consensus 293 Et~ 295 (374)
T PRK14722 293 EAS 295 (374)
T ss_pred cCC
Confidence 653
No 385
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.07 E-value=3.7e-05 Score=68.98 Aligned_cols=137 Identities=22% Similarity=0.371 Sum_probs=76.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHh-----CCceeeeeCCCCce----------EEEEEEE--------------------EeC
Q 015092 116 GYVAVLGKPNVGKSTLANQMI-----GQKLSIVTNKPQTT----------RHRILGI--------------------CSG 160 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~-----~~~~~~vs~~~~tt----------~~~~~~~--------------------~~~ 160 (413)
|.+.|.|..|+|||||++.|+ +.+...+....+.. ......+ ...
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 467899999999999999998 34444433333211 0111111 112
Q ss_pred C--CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecC
Q 015092 161 P--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKK 236 (413)
Q Consensus 161 ~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~ 236 (413)
. .....++-|.|..+.. .+ .+........-..+.++.|+|+.+-. ......+...++ ..-++|+||+
T Consensus 81 ~~~~~d~IiIE~sG~a~p~--~l--~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~-----~ADvIvlnK~ 151 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPA--PL--ILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA-----FADVIVLNKI 151 (178)
T ss_dssp CHGC-SEEEEEEECSSGGG--GH--HHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC-----T-SEEEEE-G
T ss_pred cCCCcCEEEECCccccccc--hh--hhccccccccccccceeEEeccccccccccchhhhhhcch-----hcCEEEEecc
Confidence 2 3578899999975422 22 11122222234678999999996521 222233344443 3458999999
Q ss_pred CCCChh-hHHHHHHHHHhcCCCccEE
Q 015092 237 DLIKPG-EIAKKLEWYEKFTDVDEVI 261 (413)
Q Consensus 237 Dl~~~~-~~~~~~~~~~~~~~~~~v~ 261 (413)
|+.+.. .+....+.++...+..+++
T Consensus 152 D~~~~~~~i~~~~~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 152 DLVSDEQKIERVREMIRELNPKAPIV 177 (178)
T ss_dssp GGHHHH--HHHHHHHHHHH-TTSEEE
T ss_pred ccCChhhHHHHHHHHHHHHCCCCEEe
Confidence 998766 3356666666666655554
No 386
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.06 E-value=0.00011 Score=70.38 Aligned_cols=58 Identities=16% Similarity=0.144 Sum_probs=40.1
Q ss_pred CCCCEEEEEecCCCCC----h-----hhHHHHHHHHH---hcCCCccEEEcccCCCCCHHHHHHHHHhhCC
Q 015092 225 DKLPILLVLNKKDLIK----P-----GEIAKKLEWYE---KFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 225 ~~~p~ilV~NK~Dl~~----~-----~~~~~~~~~~~---~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
.++|+++|++|||.+. . +....+..+++ ...+ ...|.+|++...|++-|..+|+....
T Consensus 221 lGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~G-aaLiyTSvKE~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 221 LGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYG-AALIYTSVKETKNIDLLYKYIVHRSY 290 (473)
T ss_pred CCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcC-ceeEEeecccccchHHHHHHHHHHhc
Confidence 4689999999999842 1 11122222222 2222 46899999999999999999998653
No 387
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.01 E-value=9.6e-06 Score=67.25 Aligned_cols=113 Identities=21% Similarity=0.160 Sum_probs=64.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCC-ceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-TTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~-tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
+|+++|..|+|||+|+.++....+. ..+. .|.. +..+| ....+.
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~~---~~~~~~t~~------------~~~~~--------------------~~~~~s 46 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPFD---YVPTVFTIG------------IDVYD--------------------PTSYES 46 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCcc---ccCceehhh------------hhhcc--------------------ccccCC
Confidence 6899999999999999999655442 1111 1110 11111 112457
Q ss_pred ccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHH
Q 015092 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (413)
Q Consensus 196 aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~ 272 (413)
++.++.|++..........+....+.....+.|.++++||.|+........ ... .+++.+||++|.|+.
T Consensus 47 ~~~~~~v~~~~~~~s~~~~~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~---~~~-----~~~~~~s~~~~~~~~ 115 (124)
T smart00010 47 FDVVLQCWRVDDRDSADNKNVPEVLVGNKSDLPILVGGNRDVLEEERQVAT---EEG-----LEFAETSAKTPEEGE 115 (124)
T ss_pred CCEEEEEEEccCHHHHHHHhHHHHHhcCCCCCcEEEEeechhhHhhCcCCH---HHH-----HHHHHHhCCCcchhh
Confidence 788888787665332111132222222225688999999999843222111 110 134667999999884
No 388
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.89 E-value=0.00027 Score=62.85 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=41.3
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCC
Q 015092 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (413)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~ 240 (413)
+..++++||||........+.. + ..... ....|.+++|+|+..+... ........+. .+ ..-+|+||+|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~-l-~~l~~-~~~~~~~~lVv~~~~~~~~-~~~~~~~~~~--~~-~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEE-L-KKIKR-VVKPDEVLLVVDAMTGQDA-VNQAKAFNEA--LG-ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHH-H-HHHHh-hcCCCeEEEEEECCCChHH-HHHHHHHHhh--CC-CCEEEEECCcCCC
Confidence 4568999999964321111111 1 11211 2348999999998654332 3344444333 23 4678889999864
No 389
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.89 E-value=5.4e-05 Score=70.82 Aligned_cols=130 Identities=15% Similarity=0.187 Sum_probs=77.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeee---CCCCceEEEEEEEEeCCC--eeEEEEeCCCCchh-----hhhhHHHH
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVT---NKPQTTRHRILGICSGPE--YQMILYDTPGIIEK-----KIHMLDSM 184 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs---~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~-----~~~~l~~~ 184 (413)
+.+|..||.+|.|||||++.|.+.++.... ..|+......+..+...+ ..+.++||.|+++. ++..+-.+
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 358999999999999999999998874211 111111111111111222 46889999999762 22222222
Q ss_pred HHH-------------HHHhhc--ccccEEEEEeeCC-CCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHH
Q 015092 185 MMK-------------NVRSAG--INADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247 (413)
Q Consensus 185 ~~~-------------~~~~~~--~~aD~vl~VvD~~-~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~ 247 (413)
+.. .....+ ...++++|.|..+ +++...+......+. .+..+|-|+-|.|.....++...
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld---skVNIIPvIAKaDtisK~eL~~F 197 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD---SKVNIIPVIAKADTISKEELKRF 197 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh---hhhhhHHHHHHhhhhhHHHHHHH
Confidence 211 122222 2578899998876 455565554444333 46788889999999877666543
No 390
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.89 E-value=2.1e-05 Score=77.30 Aligned_cols=148 Identities=24% Similarity=0.172 Sum_probs=94.2
Q ss_pred HHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEccc
Q 015092 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (413)
Q Consensus 186 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA 265 (413)
.+.....+..+|+|+.|+|+..+.......+.+.. ..+|.++|+||+|+.+........+.+....+ ...+.+|+
T Consensus 25 ~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v----~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~-~~~~~v~~ 99 (322)
T COG1161 25 KRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIV----KEKPKLLVLNKADLAPKEVTKKWKKYFKKEEG-IKPIFVSA 99 (322)
T ss_pred HHHHHHhcccCCEEEEEEeccccccccCccHHHHH----ccCCcEEEEehhhcCCHHHHHHHHHHHHhcCC-CccEEEEe
Confidence 34566678999999999999998866555555555 34666999999999998877777777776543 35688888
Q ss_pred CCCCCHHHHHHHHHhh--------CCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEec----
Q 015092 266 KYGHGVEDIRDWILTK--------LPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR---- 333 (413)
Q Consensus 266 ~~g~gv~~L~~~l~~~--------l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~~v~v~~~~~~---- 333 (413)
+.+.+...+..++... .+.+.... . ...+-...+|+|+||.+|.+.++..
T Consensus 100 ~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~----------~--------~~v~vvG~PNVGKSslIN~L~~k~~~~~s 161 (322)
T COG1161 100 KSRQGGKKIRKALEKLSEEKIKRLKKKGLLKR----------K--------IRVGVVGYPNVGKSTLINRLLGKKVAKTS 161 (322)
T ss_pred ecccCccchHHHHHHHHHHHHHHHhhcCCCcc----------c--------eEEEEEcCCCCcHHHHHHHHhcccceeeC
Confidence 8888887777433322 11110000 0 0123345789999998887665433
Q ss_pred --CCCeeEEEEEEEEeeCCcceEEeecCC
Q 015092 334 --PTAKDFIQVEIVVEKNSQKIILIGKGG 360 (413)
Q Consensus 334 --~~~~~~i~~~~~~~r~~~~~i~iG~~g 360 (413)
||. +.-.+.+.. .....++++.|
T Consensus 162 ~~PG~-Tk~~q~i~~---~~~i~LlDtPG 186 (322)
T COG1161 162 NRPGT-TKGIQWIKL---DDGIYLLDTPG 186 (322)
T ss_pred CCCce-ecceEEEEc---CCCeEEecCCC
Confidence 442 222222322 23366667776
No 391
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.86 E-value=0.00017 Score=73.85 Aligned_cols=156 Identities=21% Similarity=0.183 Sum_probs=91.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEE--EEEEE-EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH--RILGI-CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~--~~~~~-~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
+-..+-++|..++|||.|+++++|..+.. ...+++.. .+..+ .......+.+-|.+-. ....+.+
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~--~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~---~~~~l~~------- 491 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGRSMSD--NNTGTTKPRYAVNSVEVKGQQKYLILREIGED---DQDFLTS------- 491 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhcccccc--ccccCCCCceeeeeeeeccccceEEEeecCcc---ccccccC-------
Confidence 34478999999999999999999977653 22222211 11111 1133344566665532 1111110
Q ss_pred hhcccccEEEEEeeCCCCCchHHH-HHHHHccccCCCCCEEEEEecCCCCChhh-HHHHHHHHHhcCCCccEEEcccCCC
Q 015092 191 SAGINADCIVVLVDACKAPERIDE-ILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~~~~~~-~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
.-..||++.+++|.+++...... .+.+.-.. ....|+++|+.|+|+....+ ..-....+....+..+.+.+|.++.
T Consensus 492 -ke~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~-~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~ 569 (625)
T KOG1707|consen 492 -KEAACDVACLVYDSSNPRSFEYLAEVYNKYFD-LYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTL 569 (625)
T ss_pred -ccceeeeEEEecccCCchHHHHHHHHHHHhhh-ccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCC
Confidence 01589999999999865432211 11111111 26899999999999975321 1111244444456667788888852
Q ss_pred CCHHHHHHHHHhhCCC
Q 015092 269 HGVEDIRDWILTKLPL 284 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~~ 284 (413)
.. .+++..|+.++..
T Consensus 570 ~s-~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 570 SS-NELFIKLATMAQY 584 (625)
T ss_pred CC-chHHHHHHHhhhC
Confidence 22 7899998887753
No 392
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.85 E-value=4.9e-05 Score=77.40 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=63.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------CCceeeeeCCCCce-------------EEEEEEEE--------------eC
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-------------RHRILGIC--------------SG 160 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~------~~~~~~vs~~~~tt-------------~~~~~~~~--------------~~ 160 (413)
++..|+++|.+|+||||++-.|. +.++..++...... ........ ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 34589999999999999887773 22333222211100 00011100 01
Q ss_pred CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCC-CEEEEEecCCCC
Q 015092 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-PILLVLNKKDLI 239 (413)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~-p~ilV~NK~Dl~ 239 (413)
....++++||||..+.....+.+ + .. ...+..+|.+++|+|++.+.... ... +.+.... ..-+|+||+|-.
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~E-l-~~-l~~~~~pdevlLVvda~~gq~av-~~a----~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEE-M-KE-IKEAVKPDEVLLVIDATIGQQAK-NQA----KAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHH-H-HH-HHHHhcccceeEEEeccccHHHH-HHH----HHHHhcCCCCEEEEecccCC
Confidence 22478999999965432222211 1 11 12244789999999998763221 112 2211223 346789999975
Q ss_pred C
Q 015092 240 K 240 (413)
Q Consensus 240 ~ 240 (413)
.
T Consensus 246 a 246 (437)
T PRK00771 246 A 246 (437)
T ss_pred C
Confidence 3
No 393
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.85 E-value=8.9e-05 Score=64.46 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=34.7
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCC
Q 015092 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (413)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~D 237 (413)
++.+.|+||||.... ....+..||.+|+|+...- ... ..+... .. -..--++|+||+|
T Consensus 91 ~~D~iiIDtaG~~~~------------~~~~~~~Ad~~ivv~tpe~--~D~-y~~~k~-~~--~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS------------EVDIASMADTTVVVMAPGA--GDD-IQAIKA-GI--MEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh------------hhhHHHhCCEEEEEECCCc--hhH-HHHhhh-hH--hhhcCEEEEeCCC
Confidence 467999999996421 1223678999999887651 111 111111 11 2345589999998
No 394
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.84 E-value=0.00018 Score=74.19 Aligned_cols=144 Identities=21% Similarity=0.281 Sum_probs=75.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC--------CceeeeeCCCCce----------E-E--EEEEEE----------eCCC
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIG--------QKLSIVTNKPQTT----------R-H--RILGIC----------SGPE 162 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~--------~~~~~vs~~~~tt----------~-~--~~~~~~----------~~~~ 162 (413)
+...|+|+|.+|+||||++..|.. .++..++...... . . ...... ...+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 445899999999999999988853 2333333211110 0 0 001000 1235
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh
Q 015092 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (413)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~ 242 (413)
+.++||||||....... +...+ ....... ....++|+++..+.......+..+ . ...+.-+|+||+|....
T Consensus 429 ~DLVLIDTaG~s~~D~~-l~eeL-~~L~aa~--~~a~lLVLpAtss~~Dl~eii~~f-~---~~~~~gvILTKlDEt~~- 499 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRA-LAAQL-NWLRAAR--QVTSLLVLPANAHFSDLDEVVRRF-A---HAKPQGVVLTKLDETGR- 499 (559)
T ss_pred CCEEEecCCCcchhhHH-HHHHH-HHHHHhh--cCCcEEEEECCCChhHHHHHHHHH-H---hhCCeEEEEecCcCccc-
Confidence 68999999997542222 11111 1122222 234677788776544444433322 2 23577899999997532
Q ss_pred hHHHHHHHHHhcCCCccEEEcccCCCCCH
Q 015092 243 EIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (413)
Q Consensus 243 ~~~~~~~~~~~~~~~~~v~~iSA~~g~gv 271 (413)
.-..+....... .|+.+++ +|..|
T Consensus 500 -lG~aLsv~~~~~--LPI~yvt--~GQ~V 523 (559)
T PRK12727 500 -FGSALSVVVDHQ--MPITWVT--DGQRV 523 (559)
T ss_pred -hhHHHHHHHHhC--CCEEEEe--CCCCc
Confidence 223333333322 3555554 45666
No 395
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.84 E-value=0.00011 Score=72.10 Aligned_cols=142 Identities=19% Similarity=0.323 Sum_probs=77.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC----ceeeeeCCCCce----------EEEEEEE-----EeC-C-------------
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQ----KLSIVTNKPQTT----------RHRILGI-----CSG-P------------- 161 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~----~~~~vs~~~~tt----------~~~~~~~-----~~~-~------------- 161 (413)
-|...|.|.-|+|||||+|+|+.. +++.+....|.+ ...+... ++. .
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~~ 83 (318)
T PRK11537 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHHH
Confidence 457899999999999999999754 222221111111 0111111 110 0
Q ss_pred ------CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHH--HHHHHHccccCCCCCEEEEE
Q 015092 162 ------EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID--EILEEGVGDHKDKLPILLVL 233 (413)
Q Consensus 162 ------~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~--~~l~~~l~~~~~~~p~ilV~ 233 (413)
.....++.|.|+.+ +..-+...+........-..|.++.|+|+.+...... .....++ ...-++|+
T Consensus 84 ~~~~~~~~d~IvIEttG~a~-p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi-----~~AD~Ivl 157 (318)
T PRK11537 84 LDKGNIQFDRLVIECTGMAD-PGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV-----GYADRILL 157 (318)
T ss_pred HhccCCCCCEEEEECCCccC-HHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH-----HhCCEEEE
Confidence 24568899999864 3222222111111111224688999999976432211 1112222 23458999
Q ss_pred ecCCCCChhhHHHHHHHHHhcCCCccEEEcc
Q 015092 234 NKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 264 (413)
Q Consensus 234 NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iS 264 (413)
||+|+.... ......+....+..+++.++
T Consensus 158 nK~Dl~~~~--~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 158 TKTDVAGEA--EKLRERLARINARAPVYTVV 186 (318)
T ss_pred eccccCCHH--HHHHHHHHHhCCCCEEEEec
Confidence 999998743 34556666666667777654
No 396
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.82 E-value=0.00019 Score=70.99 Aligned_cols=155 Identities=19% Similarity=0.258 Sum_probs=86.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC----ceeeeeCCCCce----------------EEEEEEE-----E----------
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQ----KLSIVTNKPQTT----------------RHRILGI-----C---------- 158 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~----~~~~vs~~~~tt----------------~~~~~~~-----~---------- 158 (413)
+-|...|.|.-|+|||||+|.|+.. +++.+....|.. ...+... +
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~~ 82 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIPT 82 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHHH
Confidence 3457889999999999999999753 233222221111 0111111 0
Q ss_pred -----e-CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCch---------------------
Q 015092 159 -----S-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER--------------------- 211 (413)
Q Consensus 159 -----~-~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~--------------------- 211 (413)
. .......++.|.|+.+ + ..+-..+........-..|.++.|||+.+....
T Consensus 83 l~~l~~~~~~~d~IvIEtsG~a~-P-~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (341)
T TIGR02475 83 MTKLLARRQRPDHILIETSGLAL-P-KPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDH 160 (341)
T ss_pred HHHHHhccCCCCEEEEeCCCCCC-H-HHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccc
Confidence 0 1234678999999864 2 223222211111112257889999999743210
Q ss_pred ---HHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCC-CccEEEcccCCCCCHHHHHH
Q 015092 212 ---IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD-VDEVIPVSAKYGHGVEDIRD 276 (413)
Q Consensus 212 ---~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~-~~~v~~iSA~~g~gv~~L~~ 276 (413)
....+..++ ...-++|+||+|+.+...+......+....+ ..+++.++- .......|+.
T Consensus 161 ~~~~~~~~~~Qi-----~~AD~IvlnK~Dl~~~~~l~~~~~~l~~~~~~~a~i~~~~~-~~v~~~~ll~ 223 (341)
T TIGR02475 161 ETPLEELFEDQL-----ACADLVILNKADLLDAAGLARVRAEIAAELPRAVKIVEASH-GEVDARVLLG 223 (341)
T ss_pred cchHHHHHHHHH-----HhCCEEEEeccccCCHHHHHHHHHHHHHhCCCCCEEEEccc-CCCCHHHHhC
Confidence 011222222 2346899999999998888777777776433 346666542 2345555544
No 397
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.81 E-value=0.00016 Score=65.98 Aligned_cols=117 Identities=20% Similarity=0.229 Sum_probs=63.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh------CCceeeeeCCCCc---e----------EEEEEEE----------------EeCC
Q 015092 117 YVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQT---T----------RHRILGI----------------CSGP 161 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~------~~~~~~vs~~~~t---t----------~~~~~~~----------------~~~~ 161 (413)
.+++||++||||||.+-+|. +.++..++-.... . ....... ...+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 68999999999999987763 3333333321110 0 0010100 0113
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCC
Q 015092 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (413)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~ 240 (413)
+..++++||||........+ ..+. ...... ..+-+++|++++.+..... .+....+. -.+-=++++|.|-..
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~-~el~-~~~~~~-~~~~~~LVlsa~~~~~~~~-~~~~~~~~---~~~~~lIlTKlDet~ 154 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELL-EELK-KLLEAL-NPDEVHLVLSATMGQEDLE-QALAFYEA---FGIDGLILTKLDETA 154 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHH-HHHH-HHHHHH-SSSEEEEEEEGGGGGHHHH-HHHHHHHH---SSTCEEEEESTTSSS
T ss_pred CCCEEEEecCCcchhhHHHH-HHHH-HHhhhc-CCccceEEEecccChHHHH-HHHHHhhc---ccCceEEEEeecCCC
Confidence 45799999999754332222 2222 222222 6788999999987655444 33333222 124467799999764
No 398
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.81 E-value=0.00031 Score=71.24 Aligned_cols=75 Identities=20% Similarity=0.277 Sum_probs=46.2
Q ss_pred eEEEEeCCCCchhhhh----hHHHHHHHHHHhhcccccEEEEEeeCCC-CC-chHHHHHHHHccccCCCCCEEEEEecCC
Q 015092 164 QMILYDTPGIIEKKIH----MLDSMMMKNVRSAGINADCIVVLVDACK-AP-ERIDEILEEGVGDHKDKLPILLVLNKKD 237 (413)
Q Consensus 164 ~~~l~DtpG~~~~~~~----~l~~~~~~~~~~~~~~aD~vl~VvD~~~-~~-~~~~~~l~~~l~~~~~~~p~ilV~NK~D 237 (413)
+++++|.||+...--. .....+.+....++.+..+||+||--.. .. ...-..+...+.- .+...|+|++|+|
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP--~GrRTIfVLTKVD 490 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDP--HGRRTIFVLTKVD 490 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCC--CCCeeEEEEeecc
Confidence 5899999998652111 1122344566778899999999984211 11 1111222233333 6789999999999
Q ss_pred CCC
Q 015092 238 LIK 240 (413)
Q Consensus 238 l~~ 240 (413)
+..
T Consensus 491 lAE 493 (980)
T KOG0447|consen 491 LAE 493 (980)
T ss_pred hhh
Confidence 864
No 399
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=6.3e-05 Score=74.84 Aligned_cols=119 Identities=19% Similarity=0.274 Sum_probs=65.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC------CceeeeeCCCCc--------e-----EEEEEEEE------------e-CCC
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQT--------T-----RHRILGIC------------S-GPE 162 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~------~~~~~vs~~~~t--------t-----~~~~~~~~------------~-~~~ 162 (413)
+..|+++|++|+||||++..|.. .++..++..+.. + ........ . ..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 45899999999999999999852 233333222110 0 00000000 0 113
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCC
Q 015092 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (413)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~ 240 (413)
..++|+||||..+.....+.+. .+... ....|.+++|+|++.........+.. .+ .-..-=++++|+|-..
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL-~~~lk--~~~PdevlLVLsATtk~~d~~~i~~~-F~---~~~idglI~TKLDET~ 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEM-IETMG--QVEPDYICLTLSASMKSKDMIEIITN-FK---DIHIDGIVFTKFDETA 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHH-HHHHh--hcCCCeEEEEECCccChHHHHHHHHH-hc---CCCCCEEEEEcccCCC
Confidence 5799999999644332223222 11111 12467789999987554443332222 22 2234578899999764
No 400
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.79 E-value=0.00036 Score=71.65 Aligned_cols=61 Identities=23% Similarity=0.220 Sum_probs=41.6
Q ss_pred CCCEEEEEecCCCCCh---------hhHHHH---HHHHHhcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCC
Q 015092 226 KLPILLVLNKKDLIKP---------GEIAKK---LEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPA 287 (413)
Q Consensus 226 ~~p~ilV~NK~Dl~~~---------~~~~~~---~~~~~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~ 287 (413)
++|++||++|+|.... ..+.-+ +..+...++ +.+|.||++...+++.|+.+|...+...+.
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yG-AsL~yts~~~~~n~~~L~~yi~h~l~~~~f 268 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYG-ASLIYTSVKEEKNLDLLYKYILHRLYGFPF 268 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcC-CeEEEeeccccccHHHHHHHHHHHhccCCC
Confidence 4799999999997421 111112 222222223 478999999999999999999988765443
No 401
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.74 E-value=8.4e-05 Score=68.32 Aligned_cols=46 Identities=28% Similarity=0.247 Sum_probs=34.6
Q ss_pred hcccccEEEEEeeCCCCCchHHHHHHHHccccCCC-CCEEEEEecCCCC
Q 015092 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLI 239 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~-~p~ilV~NK~Dl~ 239 (413)
....+|.+|.|+|++...-...+.+.++... -+ +++.+|+||+|-.
T Consensus 152 ~~~~vD~vivVvDpS~~sl~taeri~~L~~e--lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 152 TIEGVDLVIVVVDPSYKSLRTAERIKELAEE--LGIKRIFVVLNKVDEE 198 (255)
T ss_pred cccCCCEEEEEeCCcHHHHHHHHHHHHHHHH--hCCceEEEEEeeccch
Confidence 4678999999999886544445555555555 45 8999999999964
No 402
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.00036 Score=70.23 Aligned_cols=120 Identities=16% Similarity=0.162 Sum_probs=65.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC-------ceeeeeCCCCce-----------E--EEEEEE---------EeCCCeeE
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQ-------KLSIVTNKPQTT-----------R--HRILGI---------CSGPEYQM 165 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~-------~~~~vs~~~~tt-----------~--~~~~~~---------~~~~~~~~ 165 (413)
...++++|++||||||++..|... ++..++..+..+ . ...... +...+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 346999999999999999988532 232222111100 0 000000 11135688
Q ss_pred EEEeCCCCchhhhhhHHHHHHHHHHhhcc--cccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCC
Q 015092 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGI--NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (413)
Q Consensus 166 ~l~DtpG~~~~~~~~l~~~~~~~~~~~~~--~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~ 240 (413)
+++||||..+.....+.. + ........ ...-+++|+|++.+........... . .--+-=+|++|.|-..
T Consensus 303 VLIDTaGr~~rd~~~l~e-L-~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f-~---~~~~~glIlTKLDEt~ 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLER-M-QSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY-E---SLNYRRILLTKLDEAD 373 (432)
T ss_pred EEEeCCCCCccCHHHHHH-H-HHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh-c---CCCCCEEEEEcccCCC
Confidence 999999975432222221 1 12222221 2346889999987755544433322 2 2235678899999753
No 403
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.00048 Score=68.39 Aligned_cols=120 Identities=13% Similarity=0.096 Sum_probs=63.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC------CceeeeeCCCCce-------------EEEEEEEEe-------------CC
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTT-------------RHRILGICS-------------GP 161 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~------~~~~~vs~~~~tt-------------~~~~~~~~~-------------~~ 161 (413)
+...++++|++|+||||++..|.. .++..++..+... ......... ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 345799999999999999998852 2333333222111 001111100 13
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCC
Q 015092 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (413)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~ 240 (413)
+..++|+||||..+.....+.. + ...... ...|.+++|+++......... .++.+..-.+--+++||.|-..
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~E-L-~~l~~~-~~p~~~~LVLsag~~~~d~~~----i~~~f~~l~i~glI~TKLDET~ 356 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSE-I-SAYTDV-VHPDLTCFTFSSGMKSADVMT----ILPKLAEIPIDGFIITKMDETT 356 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHH-H-HHHhhc-cCCceEEEECCCcccHHHHHH----HHHhcCcCCCCEEEEEcccCCC
Confidence 4689999999964422222221 1 112222 245777888876433223222 2222212235578899999753
No 404
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.00016 Score=73.12 Aligned_cols=145 Identities=18% Similarity=0.204 Sum_probs=74.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCc--------eeeeeCCC----------------CceEEEEEE-------EEeCCC
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQK--------LSIVTNKP----------------QTTRHRILG-------ICSGPE 162 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~--------~~~vs~~~----------------~tt~~~~~~-------~~~~~~ 162 (413)
...+|+++|++|+||||++..|.+.. ...+.... +........ .....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 44589999999999999999886531 11111000 000000000 011234
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh
Q 015092 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (413)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~ 242 (413)
..++++||+|..+... .+...+ .... .....+-.++|+|++.......+.+... . .-..-=++++|.|-...-
T Consensus 270 ~d~VLIDTaGrsqrd~-~~~~~l-~~l~-~~~~~~~~~LVl~at~~~~~~~~~~~~f-~---~~~~~~~I~TKlDEt~~~ 342 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQ-MLAEQI-AMLS-QCGTQVKHLLLLNATSSGDTLDEVISAY-Q---GHGIHGCIITKVDEAASL 342 (420)
T ss_pred CCEEEecCCCCCcchH-HHHHHH-HHHh-ccCCCceEEEEEcCCCCHHHHHHHHHHh-c---CCCCCEEEEEeeeCCCCc
Confidence 5689999999754322 122222 1111 1223456788999986655444433322 1 223456789999975421
Q ss_pred hHHHHHHHHHhcCCCccEEEcccCCCCCH
Q 015092 243 EIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (413)
Q Consensus 243 ~~~~~~~~~~~~~~~~~v~~iSA~~g~gv 271 (413)
-.......... .|+..++ +|.+|
T Consensus 343 --G~~l~~~~~~~--lPi~yvt--~Gq~V 365 (420)
T PRK14721 343 --GIALDAVIRRK--LVLHYVT--NGQKV 365 (420)
T ss_pred --cHHHHHHHHhC--CCEEEEE--CCCCc
Confidence 12222222221 2555554 56666
No 405
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.61 E-value=0.00088 Score=57.47 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=58.2
Q ss_pred EEcCCCCCHHHHHHHHh------CCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015092 120 VLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 120 ivG~~~~GKSsLln~L~------~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.-|.+|+|||++.-.|. |.....+.-.++.+.. .+.++++|||+.... .....+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~---------~yd~VIiD~p~~~~~-----------~~~~~l 64 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL---------DYDYIIIDTGAGISD-----------NVLDFF 64 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC---------CCCEEEEECCCCCCH-----------HHHHHH
Confidence 44689999999876653 2223323222211111 167899999984321 123447
Q ss_pred ccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCC
Q 015092 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~ 239 (413)
..||.++++++.+...-.......+.+.......++.+|+|+++..
T Consensus 65 ~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 65 LAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred HhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 8899999999876433222222333332222456788999999743
No 406
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.60 E-value=0.0027 Score=55.26 Aligned_cols=152 Identities=19% Similarity=0.234 Sum_probs=78.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC----Cceee-------eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchh----hhhh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIG----QKLSI-------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK----KIHM 180 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~----~~~~~-------vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~----~~~~ 180 (413)
.+|.|.|+||||||||+.++.. ..+.. +......+-..+..+.+.....+...+..+..-. .-..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~ 85 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEG 85 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHH
Confidence 4899999999999999988752 11110 1111111111222222222222333322111000 1133
Q ss_pred HHHHHHHHHHhhcccccEEEEEeeCCCCCchHH----HHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCC
Q 015092 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERID----EILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (413)
Q Consensus 181 l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~----~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (413)
++..+....+.++..||+++ ||--.+.+-.. ..+.+.+. ..+|+|.++-+-+.- ...+.+.....
T Consensus 86 le~i~~~al~rA~~~aDvII--IDEIGpMElks~~f~~~ve~vl~---~~kpliatlHrrsr~------P~v~~ik~~~~ 154 (179)
T COG1618 86 LEEIAIPALRRALEEADVII--IDEIGPMELKSKKFREAVEEVLK---SGKPLIATLHRRSRH------PLVQRIKKLGG 154 (179)
T ss_pred HHHHhHHHHHHHhhcCCEEE--EecccchhhccHHHHHHHHHHhc---CCCcEEEEEecccCC------hHHHHhhhcCC
Confidence 55566777788888899765 57544433222 22333332 578999888877651 23344443332
Q ss_pred CccEEEcccCCCCCHHHHHHHHHhhCC
Q 015092 257 VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 257 ~~~v~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
-++. .+-.|-+.++..+...+.
T Consensus 155 --v~v~---lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 155 --VYVF---LTPENRNRILNEILSVLK 176 (179)
T ss_pred --EEEE---EccchhhHHHHHHHHHhc
Confidence 1222 566676788877776654
No 407
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.00063 Score=68.32 Aligned_cols=121 Identities=19% Similarity=0.211 Sum_probs=65.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC----------CceeeeeCCCCce-------------EEEEEEE----------EeC
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIG----------QKLSIVTNKPQTT-------------RHRILGI----------CSG 160 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~----------~~~~~vs~~~~tt-------------~~~~~~~----------~~~ 160 (413)
++..|+++|++||||||.+..|.. .++..++..+... ..++... -..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 345899999999999999987742 2333332221100 0011111 012
Q ss_pred CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCC
Q 015092 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (413)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~ 240 (413)
.+..++++||||..+.....+. .+ ..+.......+-+++|+|++.+.....+.+.... .-.+-=++++|.|-..
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~-el-~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~----~~~~~~~I~TKlDet~ 326 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLA-EM-KELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFS----PFSYKTVIFTKLDETT 326 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHH-HH-HHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhc----CCCCCEEEEEeccCCC
Confidence 4568999999996542111111 11 1222222222258899999887555554333321 1235678899999754
No 408
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.59 E-value=0.00028 Score=66.93 Aligned_cols=148 Identities=20% Similarity=0.328 Sum_probs=78.9
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHhCC----ceeeeeCCCCceEE------------------------EEEEEE--
Q 015092 109 SHPNHKSGYVAVLGKPNVGKSTLANQMIGQ----KLSIVTNKPQTTRH------------------------RILGIC-- 158 (413)
Q Consensus 109 ~~~~~~~~~v~ivG~~~~GKSsLln~L~~~----~~~~vs~~~~tt~~------------------------~~~~~~-- 158 (413)
..+..|-|.-.|.|.-|+|||||+|.++.. +++......|...+ +....+
T Consensus 51 ~~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~ 130 (391)
T KOG2743|consen 51 SSLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKD 130 (391)
T ss_pred cCCCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecc
Confidence 344456678889999999999999998743 23322222221100 000000
Q ss_pred -----------eCCCeeEEEEeCCCCchhhhhhHHHHH-HHHHHhhcccccEEEEEeeCCCCCchHHH-----HHHHHcc
Q 015092 159 -----------SGPEYQMILYDTPGIIEKKIHMLDSMM-MKNVRSAGINADCIVVLVDACKAPERIDE-----ILEEGVG 221 (413)
Q Consensus 159 -----------~~~~~~~~l~DtpG~~~~~~~~l~~~~-~~~~~~~~~~aD~vl~VvD~~~~~~~~~~-----~l~~~l~ 221 (413)
..+.+...++.|-|+.... .+.+.| .......--.-|+++-|+|+.+.....++ .+-+..+
T Consensus 131 ~gvraie~lvqkkGkfD~IllETTGlAnPa--Pia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~ 208 (391)
T KOG2743|consen 131 NGVRAIENLVQKKGKFDHILLETTGLANPA--PIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATR 208 (391)
T ss_pred hHHHHHHHHHhcCCCcceEEEeccCCCCcH--HHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHH
Confidence 0122346789999986532 233322 12222222357999999999764321111 0101111
Q ss_pred ccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccE
Q 015092 222 DHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEV 260 (413)
Q Consensus 222 ~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v 260 (413)
+ -...--+++||.|+...+.+....+.+......+++
T Consensus 209 Q--iA~AD~II~NKtDli~~e~~~~l~q~I~~INslA~m 245 (391)
T KOG2743|consen 209 Q--IALADRIIMNKTDLVSEEEVKKLRQRIRSINSLAQM 245 (391)
T ss_pred H--HhhhheeeeccccccCHHHHHHHHHHHHHhhhHHHh
Confidence 1 112335789999999887776666665554433333
No 409
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.59 E-value=0.00044 Score=71.08 Aligned_cols=148 Identities=18% Similarity=0.260 Sum_probs=73.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC--------ceeeeeCCCC-ce----------EE--EEEE----------EEeCCC
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQ--------KLSIVTNKPQ-TT----------RH--RILG----------ICSGPE 162 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~--------~~~~vs~~~~-tt----------~~--~~~~----------~~~~~~ 162 (413)
+...++++|++||||||++..|.+. ++..+...+. .+ .. .... .....+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d 334 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRN 334 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccC
Confidence 3458999999999999999988632 2332222211 00 00 0000 011234
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh
Q 015092 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (413)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~ 242 (413)
..++++||+|..+... .+...+ ..... .....-.++|+|++.+.....+... .+......-+++||+|-...-
T Consensus 335 ~d~VLIDTaGr~~~d~-~~~e~~-~~l~~-~~~p~e~~LVLdAt~~~~~l~~i~~----~f~~~~~~g~IlTKlDet~~~ 407 (484)
T PRK06995 335 KHIVLIDTIGMSQRDR-MVSEQI-AMLHG-AGAPVKRLLLLNATSHGDTLNEVVQ----AYRGPGLAGCILTKLDEAASL 407 (484)
T ss_pred CCeEEeCCCCcChhhH-HHHHHH-HHHhc-cCCCCeeEEEEeCCCcHHHHHHHHH----HhccCCCCEEEEeCCCCcccc
Confidence 5689999999644221 111111 11111 1112337889998765443333222 221233456789999965321
Q ss_pred hHHHHHHHHHhcCCCccEEEcccCCCCCH-HHH
Q 015092 243 EIAKKLEWYEKFTDVDEVIPVSAKYGHGV-EDI 274 (413)
Q Consensus 243 ~~~~~~~~~~~~~~~~~v~~iSA~~g~gv-~~L 274 (413)
-..+...... + .|+.+++ +|.+| ++|
T Consensus 408 --G~~l~i~~~~-~-lPI~yvt--~GQ~VPeDL 434 (484)
T PRK06995 408 --GGALDVVIRY-K-LPLHYVS--NGQRVPEDL 434 (484)
T ss_pred --hHHHHHHHHH-C-CCeEEEe--cCCCChhhh
Confidence 1222222221 1 2555554 57777 443
No 410
>PRK10867 signal recognition particle protein; Provisional
Probab=97.58 E-value=0.0011 Score=67.46 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=60.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh-------CCceeeeeCCCCce-----------EE--EEEEE----------------E
Q 015092 115 SGYVAVLGKPNVGKSTLANQMI-------GQKLSIVTNKPQTT-----------RH--RILGI----------------C 158 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~-------~~~~~~vs~~~~tt-----------~~--~~~~~----------------~ 158 (413)
+..|+++|.+|+||||++-.|. |.++..++..+... +. ..... .
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a 179 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEA 179 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHH
Confidence 3479999999999999665552 33444433221111 00 00110 0
Q ss_pred eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCC
Q 015092 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (413)
Q Consensus 159 ~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl 238 (413)
...++.++++||||..+.....+ ..+ ..+... -..+-+++|+|+..+. ............ -...-+|+||+|-
T Consensus 180 ~~~~~DvVIIDTaGrl~~d~~lm-~eL-~~i~~~-v~p~evllVlda~~gq-~av~~a~~F~~~---~~i~giIlTKlD~ 252 (433)
T PRK10867 180 KENGYDVVIVDTAGRLHIDEELM-DEL-KAIKAA-VNPDEILLVVDAMTGQ-DAVNTAKAFNEA---LGLTGVILTKLDG 252 (433)
T ss_pred HhcCCCEEEEeCCCCcccCHHHH-HHH-HHHHHh-hCCCeEEEEEecccHH-HHHHHHHHHHhh---CCCCEEEEeCccC
Confidence 11345799999999644222212 111 112222 2567889999987542 221222221111 1234678899996
Q ss_pred C
Q 015092 239 I 239 (413)
Q Consensus 239 ~ 239 (413)
.
T Consensus 253 ~ 253 (433)
T PRK10867 253 D 253 (433)
T ss_pred c
Confidence 4
No 411
>PRK13695 putative NTPase; Provisional
Probab=97.54 E-value=0.0033 Score=55.93 Aligned_cols=87 Identities=16% Similarity=0.206 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhcccccEEEEEeeC---CCCCchHH-HHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCC
Q 015092 181 LDSMMMKNVRSAGINADCIVVLVDA---CKAPERID-EILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (413)
Q Consensus 181 l~~~~~~~~~~~~~~aD~vl~VvD~---~~~~~~~~-~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (413)
+...........+..+|+ +++|- ........ ..+...+ . .+.|++++.||.... ...+.+....+
T Consensus 82 le~~~~~l~~~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~-~--~~~~~i~v~h~~~~~------~~~~~i~~~~~ 150 (174)
T PRK13695 82 LERIGIPALERALEEADV--IIIDEIGKMELKSPKFVKAVEEVL-D--SEKPVIATLHRRSVH------PFVQEIKSRPG 150 (174)
T ss_pred HHHHHHHHHHhccCCCCE--EEEECCCcchhhhHHHHHHHHHHH-h--CCCeEEEEECchhhH------HHHHHHhccCC
Confidence 444455556666778887 57783 22222222 2233333 3 578999999985321 12233333333
Q ss_pred CccEEEcccCCCCCHHHHHHHHHhhC
Q 015092 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 257 ~~~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
. .++.+ +.+|=+++...+.+.+
T Consensus 151 ~-~i~~~---~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 151 G-RVYEL---TPENRDSLPFEILNRL 172 (174)
T ss_pred c-EEEEE---cchhhhhHHHHHHHHH
Confidence 2 45555 4566677777777654
No 412
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.52 E-value=0.00028 Score=80.65 Aligned_cols=122 Identities=24% Similarity=0.262 Sum_probs=70.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeee-------CCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh------hhh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKK------IHM 180 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs-------~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~------~~~ 180 (413)
.-|-..|+|.+|+||||+++.. |-.+.... ...+.|+++-. .+ ..+.+++||+|..-.. ...
T Consensus 110 ~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~w-wf---~~~avliDtaG~y~~~~~~~~~~~~ 184 (1169)
T TIGR03348 110 DLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDW-WF---TDEAVLIDTAGRYTTQDSDPEEDAA 184 (1169)
T ss_pred cCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccce-Ee---cCCEEEEcCCCccccCCCcccccHH
Confidence 3457899999999999999986 44443211 11122332111 11 1367899999943111 112
Q ss_pred HHHHHHHHHHhh--cccccEEEEEeeCCCCCc-----------hHHHHHHHHccccCCCCCEEEEEecCCCCC
Q 015092 181 LDSMMMKNVRSA--GINADCIVVLVDACKAPE-----------RIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (413)
Q Consensus 181 l~~~~~~~~~~~--~~~aD~vl~VvD~~~~~~-----------~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~ 240 (413)
....+....+.. -.-.++||++||+.+-.. .....+.++...++...|+.||++|||+..
T Consensus 185 ~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 185 AWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 223333333332 245899999999874331 111223333334446899999999999874
No 413
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.51 E-value=0.00045 Score=67.91 Aligned_cols=72 Identities=24% Similarity=0.228 Sum_probs=53.0
Q ss_pred HHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCC
Q 015092 185 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (413)
Q Consensus 185 ~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (413)
+.+..+..+..+|+||.|+||.++....-....+.+.....++..|+|+||+|+++.+.+..++.++...++
T Consensus 136 Y~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~p 207 (435)
T KOG2484|consen 136 YDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGP 207 (435)
T ss_pred HHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCC
Confidence 445667778899999999999998744332233322222245899999999999999988888888877543
No 414
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.49 E-value=0.00072 Score=67.27 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMI 136 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~ 136 (413)
..+.|++||++||||||.+-.|.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLA 224 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLA 224 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHH
Confidence 36689999999999999988874
No 415
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.48 E-value=0.0003 Score=63.51 Aligned_cols=76 Identities=22% Similarity=0.284 Sum_probs=39.4
Q ss_pred eEEEEeCCCCchh-hhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHH----HHHHccccCCCCCEEEEEecCCC
Q 015092 164 QMILYDTPGIIEK-KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI----LEEGVGDHKDKLPILLVLNKKDL 238 (413)
Q Consensus 164 ~~~l~DtpG~~~~-~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~----l~~~l~~~~~~~p~ilV~NK~Dl 238 (413)
.+.++||||..+- ..-.+-..+++.... ..--=+++|++|+.- .-..... +..+........|.|=|++|+|+
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~-~~F~~c~Vylldsqf-~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDL 176 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQ-WNFNVCVVYLLDSQF-LVDSTKFISGCLSALSAMISLEVPHINVLSKMDL 176 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhc-ccCceeEEEEeccch-hhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHH
Confidence 5889999996541 111122223333333 122235677777531 1111111 11111222257999999999999
Q ss_pred CCh
Q 015092 239 IKP 241 (413)
Q Consensus 239 ~~~ 241 (413)
.+.
T Consensus 177 lk~ 179 (273)
T KOG1534|consen 177 LKD 179 (273)
T ss_pred hhh
Confidence 865
No 416
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.48 E-value=0.00036 Score=71.07 Aligned_cols=145 Identities=17% Similarity=0.184 Sum_probs=73.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC--------CceeeeeCCCCce-------------EEEEEEE----------EeCCCe
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIG--------QKLSIVTNKPQTT-------------RHRILGI----------CSGPEY 163 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~--------~~~~~vs~~~~tt-------------~~~~~~~----------~~~~~~ 163 (413)
...++++|++||||||++..|.. .++..++..+... ....... -...+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 34899999999999998877632 2333333322110 0000000 012346
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhh
Q 015092 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (413)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~ 243 (413)
.++||||||..+.....+. .+ ..+.......+-+++|++++.+.......+.. ... . .+.-++++|+|-...-
T Consensus 301 DlVlIDt~G~~~~d~~~~~-~L-~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~-f~~--~-~~~~vI~TKlDet~~~- 373 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIE-EL-KALIEFSGEPIDVYLVLSATTKYEDLKDIYKH-FSR--L-PLDGLIFTKLDETSSL- 373 (424)
T ss_pred CEEEEeCCCCCCCCHHHHH-HH-HHHHhccCCCCeEEEEEECCCCHHHHHHHHHH-hCC--C-CCCEEEEecccccccc-
Confidence 7999999997543222211 11 11211122345678889987654444433322 222 1 2346889999975321
Q ss_pred HHHHHHHHHhcCCCccEEEcccCCCCCH
Q 015092 244 IAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (413)
Q Consensus 244 ~~~~~~~~~~~~~~~~v~~iSA~~g~gv 271 (413)
........... .|+..++ +|.+|
T Consensus 374 -G~i~~~~~~~~--lPv~yit--~Gq~V 396 (424)
T PRK05703 374 -GSILSLLIESG--LPISYLT--NGQRV 396 (424)
T ss_pred -cHHHHHHHHHC--CCEEEEe--CCCCC
Confidence 12233332221 2555544 56665
No 417
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.45 E-value=0.001 Score=54.31 Aligned_cols=95 Identities=23% Similarity=0.220 Sum_probs=55.5
Q ss_pred EEEE-cCCCCCHHHHHHHHh-------CCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHH
Q 015092 118 VAVL-GKPNVGKSTLANQMI-------GQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (413)
Q Consensus 118 v~iv-G~~~~GKSsLln~L~-------~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~ 189 (413)
|+++ +..|+||||+.-.|. |.....+.-.++.. ..+.++|||+.... ..
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~------------~D~IIiDtpp~~~~-----------~~ 58 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFG------------DDYVVVDLGRSLDE-----------VS 58 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCC------------CCEEEEeCCCCcCH-----------HH
Confidence 3444 578999999776652 33333333222221 17899999985331 12
Q ss_pred HhhcccccEEEEEeeCCCCCchHHHHHHHHccccC-C-CCCEEEEEec
Q 015092 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHK-D-KLPILLVLNK 235 (413)
Q Consensus 190 ~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~-~-~~p~ilV~NK 235 (413)
...+..||.++++++.+.........+.+.++... . ..++.+|+|+
T Consensus 59 ~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 59 LAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 33467899999999876543333333344333322 2 4567788886
No 418
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.43 E-value=0.0013 Score=58.79 Aligned_cols=67 Identities=24% Similarity=0.185 Sum_probs=46.1
Q ss_pred CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCC
Q 015092 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (413)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~ 240 (413)
..+.++++|||+.... ....++..||.+++++..+.........+.+.++. .+.|+.+|+||+|...
T Consensus 91 ~~~d~viiDtpp~~~~-----------~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~--~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIGC-----------PVIASLTGADAALLVTEPTPSGLHDLERAVELVRH--FGIPVGVVINKYDLND 157 (179)
T ss_pred cCCCEEEEECcCCCcH-----------HHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHH--cCCCEEEEEeCCCCCc
Confidence 5678999999974221 12344678999999998875443333444555555 5678899999999753
No 419
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.43 E-value=0.0022 Score=65.28 Aligned_cols=71 Identities=20% Similarity=0.162 Sum_probs=38.5
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCC
Q 015092 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (413)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~ 239 (413)
++.++++||||..+.... +-..+ ..+.. .-.+|-+++|+|++.+. ............ - ...=+|+||+|-.
T Consensus 182 ~~DvVIIDTaGr~~~d~~-l~~eL-~~i~~-~~~p~e~lLVvda~tgq-~~~~~a~~f~~~--v-~i~giIlTKlD~~ 252 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEE-LMEEL-AAIKE-ILNPDEILLVVDAMTGQ-DAVNTAKTFNER--L-GLTGVVLTKLDGD 252 (428)
T ss_pred CCCEEEEeCCCccccCHH-HHHHH-HHHHH-hhCCceEEEEEeccchH-HHHHHHHHHHhh--C-CCCEEEEeCccCc
Confidence 456999999996442222 21212 12222 23578899999987542 222222222111 1 2346789999964
No 420
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.43 E-value=0.00093 Score=63.85 Aligned_cols=119 Identities=21% Similarity=0.268 Sum_probs=66.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC------ceeeeeCCCCc--------e-----EEEEEEEE-------------eCCC
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT--------T-----RHRILGIC-------------SGPE 162 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~------~~~~vs~~~~t--------t-----~~~~~~~~-------------~~~~ 162 (413)
..+++++|.+|+||||++..|... .+..++..+.. + ........ ...+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 358999999999999999887532 22222221110 0 00000000 1124
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCC
Q 015092 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (413)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~ 240 (413)
..++++||||..+.....+.+ +.+ ... ....|-+++|+|++.........+... ..-.+-=++++|.|-..
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~e-l~~-~~~-~~~~~~~~LVl~a~~~~~d~~~~~~~f----~~~~~~~~I~TKlDet~ 225 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEE-MIE-TMG-QVEPDYICLTLSASMKSKDMIEIITNF----KDIHIDGIVFTKFDETA 225 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHH-HHH-HHh-hhCCCeEEEEEcCccCHHHHHHHHHHh----CCCCCCEEEEEeecCCC
Confidence 689999999965433232322 211 222 225677899999876544443333322 12345678899999764
No 421
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.34 E-value=0.00023 Score=65.27 Aligned_cols=122 Identities=27% Similarity=0.340 Sum_probs=63.9
Q ss_pred EEEEcCCCCCHHHHHHHH------hCCceeeeeCCCCceEEEEEE------EE---------------------------
Q 015092 118 VAVLGKPNVGKSTLANQM------IGQKLSIVTNKPQTTRHRILG------IC--------------------------- 158 (413)
Q Consensus 118 v~ivG~~~~GKSsLln~L------~~~~~~~vs~~~~tt~~~~~~------~~--------------------------- 158 (413)
.+|+|+||+||||..+.+ +|..+..|.-.|......... ++
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~~ 84 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEAN 84 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHhh
Confidence 578899999999988765 466655554444332211100 00
Q ss_pred --------eCCCeeEEEEeCCCCchh--hhhhHHHHHHHHHHhhcccccEEEEEeeCC---CCCchHHHHHHHHccccCC
Q 015092 159 --------SGPEYQMILYDTPGIIEK--KIHMLDSMMMKNVRSAGINADCIVVLVDAC---KAPERIDEILEEGVGDHKD 225 (413)
Q Consensus 159 --------~~~~~~~~l~DtpG~~~~--~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~---~~~~~~~~~l~~~l~~~~~ 225 (413)
........++|+||.++- ..+.+...+..... ..-.=+++-++|+- ++..-....+..+.....-
T Consensus 85 idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek--~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~m 162 (290)
T KOG1533|consen 85 IDWLLEKLKPLTDHYVLFDCPGQVELFTHHDSLNKIFRKLEK--LDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHM 162 (290)
T ss_pred hHHHHHHhhhccCcEEEEeCCCcEEEEeccchHHHHHHHHHH--cCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhh
Confidence 001125889999997651 12233333322221 22333455566643 2222222222222222224
Q ss_pred CCCEEEEEecCCCCCh
Q 015092 226 KLPILLVLNKKDLIKP 241 (413)
Q Consensus 226 ~~p~ilV~NK~Dl~~~ 241 (413)
..|-|=|+.|+|+...
T Consensus 163 elphVNvlSK~Dl~~~ 178 (290)
T KOG1533|consen 163 ELPHVNVLSKADLLKK 178 (290)
T ss_pred cccchhhhhHhHHHHh
Confidence 7899999999998643
No 422
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.30 E-value=0.002 Score=63.93 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=49.5
Q ss_pred EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCC------------chHHHHHHHHcccc-
Q 015092 157 ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP------------ERIDEILEEGVGDH- 223 (413)
Q Consensus 157 ~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~------------~~~~~~l~~~l~~~- 223 (413)
.+..++..+.+||.+|. ...+ +.|..++.++++++||+|.++-. ......+..++...
T Consensus 178 ~f~~~~~~~~~~DvgGq--r~~R-------~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~ 248 (342)
T smart00275 178 AFIVKKLFFRMFDVGGQ--RSER-------KKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW 248 (342)
T ss_pred EEEECCeEEEEEecCCc--hhhh-------hhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence 35567788999999994 2222 33566689999999999998531 11112222233221
Q ss_pred CCCCCEEEEEecCCCCC
Q 015092 224 KDKLPILLVLNKKDLIK 240 (413)
Q Consensus 224 ~~~~p~ilV~NK~Dl~~ 240 (413)
-.+.|++|++||.|+..
T Consensus 249 ~~~~piil~~NK~D~~~ 265 (342)
T smart00275 249 FANTSIILFLNKIDLFE 265 (342)
T ss_pred ccCCcEEEEEecHHhHH
Confidence 15789999999999863
No 423
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.29 E-value=0.0049 Score=61.60 Aligned_cols=66 Identities=23% Similarity=0.291 Sum_probs=40.4
Q ss_pred HHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCC--CCCHHHHHHHHHhhCC
Q 015092 214 EILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY--GHGVEDIRDWILTKLP 283 (413)
Q Consensus 214 ~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~--g~gv~~L~~~l~~~l~ 283 (413)
+...+.|+. -++|+++++|=.+-... +.......+...++ .+++++++.. ...+..+++.++-..|
T Consensus 170 ervI~ELk~--igKPFvillNs~~P~s~-et~~L~~eL~ekY~-vpVlpvnc~~l~~~DI~~Il~~vLyEFP 237 (492)
T PF09547_consen 170 ERVIEELKE--IGKPFVILLNSTKPYSE-ETQELAEELEEKYD-VPVLPVNCEQLREEDITRILEEVLYEFP 237 (492)
T ss_pred HHHHHHHHH--hCCCEEEEEeCCCCCCH-HHHHHHHHHHHHhC-CcEEEeehHHcCHHHHHHHHHHHHhcCC
Confidence 344445566 68999999999875443 33445555555554 4889988763 3444455555444433
No 424
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.24 E-value=0.0019 Score=63.44 Aligned_cols=98 Identities=18% Similarity=0.113 Sum_probs=71.1
Q ss_pred HHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcc
Q 015092 185 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 264 (413)
Q Consensus 185 ~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iS 264 (413)
+.......+..+|++|-|+|+.++....-..+...++...+.+.+|+|+|||||++..........+.+.++. -.|..|
T Consensus 203 IW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPT-iAfHAs 281 (572)
T KOG2423|consen 203 IWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPT-IAFHAS 281 (572)
T ss_pred HHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcc-eeeehh
Confidence 3445566778999999999999988666666667777766788999999999999876555555555554321 236666
Q ss_pred cCCCCCHHHHHHHHHhhCC
Q 015092 265 AKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 265 A~~g~gv~~L~~~l~~~l~ 283 (413)
-.+..|-..|+..|.+...
T Consensus 282 i~nsfGKgalI~llRQf~k 300 (572)
T KOG2423|consen 282 INNSFGKGALIQLLRQFAK 300 (572)
T ss_pred hcCccchhHHHHHHHHHHh
Confidence 6666788888887776553
No 425
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.24 E-value=0.00083 Score=68.05 Aligned_cols=81 Identities=22% Similarity=0.204 Sum_probs=61.5
Q ss_pred HHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcc
Q 015092 185 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 264 (413)
Q Consensus 185 ~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iS 264 (413)
+-++.++.+..+|+||.+||+.++.--....+..........+..+|++||+||..+.......+++...+ .++++-|
T Consensus 164 ~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~n--i~~vf~S 241 (562)
T KOG1424|consen 164 IWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNN--IPVVFFS 241 (562)
T ss_pred HHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcC--ceEEEEe
Confidence 45677888999999999999999873333334444444335688999999999999888877777777644 5788888
Q ss_pred cCC
Q 015092 265 AKY 267 (413)
Q Consensus 265 A~~ 267 (413)
|..
T Consensus 242 A~~ 244 (562)
T KOG1424|consen 242 ALA 244 (562)
T ss_pred ccc
Confidence 876
No 426
>PRK01889 GTPase RsgA; Reviewed
Probab=97.22 E-value=0.00027 Score=70.44 Aligned_cols=55 Identities=40% Similarity=0.547 Sum_probs=35.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeC-------CCCceEEEEEEEEeCCCeeEEEEeCCCCc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILGICSGPEYQMILYDTPGII 174 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~-------~~~tt~~~~~~~~~~~~~~~~l~DtpG~~ 174 (413)
+++++|.+|+|||||+|.|++.....+.. ...+|.......+..+ ..++||||+.
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~---~~l~DtpG~~ 258 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSG---GLLIDTPGMR 258 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCC---CeecCCCchh
Confidence 89999999999999999998765432111 1224443333333322 3578999974
No 427
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.0023 Score=69.12 Aligned_cols=122 Identities=15% Similarity=0.205 Sum_probs=63.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCc--------eeeeeCCCCc---e--------EE--EEEEE----------EeCCCe
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQK--------LSIVTNKPQT---T--------RH--RILGI----------CSGPEY 163 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~--------~~~vs~~~~t---t--------~~--~~~~~----------~~~~~~ 163 (413)
...++++|++||||||++..|.+.. +..++..... . .. ..... -...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 3479999999999999999886422 2222111100 0 00 00000 012345
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCC
Q 015092 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (413)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~ 240 (413)
.++||||||..+.... +.+.+. .+.. ....+-+++|+|++.......+.+..+ +....-.+-=+|++|.|-..
T Consensus 265 D~VLIDTAGRs~~d~~-l~eel~-~l~~-~~~p~e~~LVLsAt~~~~~l~~i~~~f-~~~~~~~i~glIlTKLDEt~ 337 (767)
T PRK14723 265 HLVLIDTVGMSQRDRN-VSEQIA-MLCG-VGRPVRRLLLLNAASHGDTLNEVVHAY-RHGAGEDVDGCIITKLDEAT 337 (767)
T ss_pred CEEEEeCCCCCccCHH-HHHHHH-HHhc-cCCCCeEEEEECCCCcHHHHHHHHHHH-hhcccCCCCEEEEeccCCCC
Confidence 7999999996542222 222221 1111 235667899999886543333322222 21000124567899999754
No 428
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.13 E-value=0.0014 Score=46.84 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=25.4
Q ss_pred cccccEEEEEeeCCCCCch---HHHHHHHHccccCCCCCEEEEEecCC
Q 015092 193 GINADCIVVLVDACKAPER---IDEILEEGVGDHKDKLPILLVLNKKD 237 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~~---~~~~l~~~l~~~~~~~p~ilV~NK~D 237 (413)
....++++|++|.+..... ....+.+.++..-.++|+++|+||+|
T Consensus 11 ~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 11 AHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 3468999999999865522 11223334444335899999999998
No 429
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.09 E-value=0.0042 Score=55.00 Aligned_cols=108 Identities=20% Similarity=0.183 Sum_probs=59.7
Q ss_pred EEcCCCCCHHHHHHHHh------CCceeeeeCCCC-ceEEEEEE--------EEeCCCeeEEEEeCCCCchhhhhhHHHH
Q 015092 120 VLGKPNVGKSTLANQMI------GQKLSIVTNKPQ-TTRHRILG--------ICSGPEYQMILYDTPGIIEKKIHMLDSM 184 (413)
Q Consensus 120 ivG~~~~GKSsLln~L~------~~~~~~vs~~~~-tt~~~~~~--------~~~~~~~~~~l~DtpG~~~~~~~~l~~~ 184 (413)
.-+..|+||||+.-.|. |.++..+.-.++ .......+ ....-...++++|||+-...
T Consensus 5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~p~~~~~-------- 76 (179)
T cd02036 5 TSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGIER-------- 76 (179)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchhhcccCCEEEEECCCCCcH--------
Confidence 33589999999887762 444444433321 11111100 00000116899999984321
Q ss_pred HHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCC
Q 015092 185 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (413)
Q Consensus 185 ~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~ 239 (413)
....++..||.+|++++...........+.+.++.. ......+|+|++|..
T Consensus 77 ---~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~-~~~~~~iv~N~~~~~ 127 (179)
T cd02036 77 ---GFITAIAPADEALLVTTPEISSLRDADRVKGLLEAL-GIKVVGVIVNRVRPD 127 (179)
T ss_pred ---HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHc-CCceEEEEEeCCccc
Confidence 123346789999999987654433333344444331 224567899999865
No 430
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.01 E-value=0.0015 Score=64.03 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=49.3
Q ss_pred EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCC---------chH---HHHHHHHccccC
Q 015092 157 ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP---------ERI---DEILEEGVGDHK 224 (413)
Q Consensus 157 ~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~---------~~~---~~~l~~~l~~~~ 224 (413)
.+..++..+.+||++|. ... .+.|..++.++++++||+|.++-. ... ...+..++....
T Consensus 155 ~f~~~~~~~~~~DvgGq--~~~-------R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 155 KFTIKNLKFRMFDVGGQ--RSE-------RKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred EEEecceEEEEECCCCC--ccc-------chhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 35566789999999994 222 233566688999999999988531 111 112222222211
Q ss_pred -CCCCEEEEEecCCCCC
Q 015092 225 -DKLPILLVLNKKDLIK 240 (413)
Q Consensus 225 -~~~p~ilV~NK~Dl~~ 240 (413)
.++|++|++||.|+..
T Consensus 226 ~~~~pill~~NK~D~f~ 242 (317)
T cd00066 226 FANTSIILFLNKKDLFE 242 (317)
T ss_pred ccCCCEEEEccChHHHH
Confidence 5799999999999854
No 431
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.97 E-value=0.0042 Score=59.69 Aligned_cols=85 Identities=29% Similarity=0.376 Sum_probs=58.3
Q ss_pred cccccEEEEEeeCCCCCch---HHHHHHHHccccCCCCCEEEEEecCCCCChhhHH--HHHHHHHhcCCCccEEEcccCC
Q 015092 193 GINADCIVVLVDACKAPER---IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~~---~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~--~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
..+.|-+++|+.+..|.-. .++.+. .... .++..++|+||+|+.+..... .....+.... .+++.+||++
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv-~ae~--~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~g--y~v~~~s~~~ 151 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLV-LAEA--GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIG--YPVLFVSAKN 151 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHH-HHHH--cCCcEEEEEEccccCcchHHHHHHHHHHHHhCC--eeEEEecCcC
Confidence 4467778888877766522 223222 2233 678888899999999765544 2334444433 5899999999
Q ss_pred CCCHHHHHHHHHhhC
Q 015092 268 GHGVEDIRDWILTKL 282 (413)
Q Consensus 268 g~gv~~L~~~l~~~l 282 (413)
+.|+++|.+++...+
T Consensus 152 ~~~~~~l~~~l~~~~ 166 (301)
T COG1162 152 GDGLEELAELLAGKI 166 (301)
T ss_pred cccHHHHHHHhcCCe
Confidence 999999999887654
No 432
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.95 E-value=0.0076 Score=47.03 Aligned_cols=71 Identities=24% Similarity=0.276 Sum_probs=44.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccc
Q 015092 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (413)
Q Consensus 118 v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD 197 (413)
+++.|.+|+||||+...|...-.. .+.. . ..+. .+.++|+||....... + .......+|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~-v---~~~~----d~iivD~~~~~~~~~~-~-------~~~~~~~~~ 60 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKR-V---LLID----DYVLIDTPPGLGLLVL-L-------CLLALLAAD 60 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCe-E---EEEC----CEEEEeCCCCccchhh-h-------hhhhhhhCC
Confidence 678899999999999887543211 0000 0 0001 7899999995432110 0 133467899
Q ss_pred EEEEEeeCCCCC
Q 015092 198 CIVVLVDACKAP 209 (413)
Q Consensus 198 ~vl~VvD~~~~~ 209 (413)
.++++++.....
T Consensus 61 ~vi~v~~~~~~~ 72 (99)
T cd01983 61 LVIIVTTPEALA 72 (99)
T ss_pred EEEEecCCchhh
Confidence 999999876543
No 433
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.94 E-value=0.0066 Score=48.89 Aligned_cols=66 Identities=29% Similarity=0.433 Sum_probs=41.8
Q ss_pred EEEEc-CCCCCHHHHHHHHhC------CceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015092 118 VAVLG-KPNVGKSTLANQMIG------QKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 118 v~ivG-~~~~GKSsLln~L~~------~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
|++.| ..|+||||+.-.|.. .++..+.-.+ .+.+.++|||+.... ...
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~--------------~~d~viiD~p~~~~~-----------~~~ 56 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDP--------------QYDYIIIDTPPSLGL-----------LTR 56 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCC--------------CCCEEEEeCcCCCCH-----------HHH
Confidence 56666 689999998776532 1222111111 167899999995321 122
Q ss_pred hhcccccEEEEEeeCCCC
Q 015092 191 SAGINADCIVVLVDACKA 208 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~ 208 (413)
.++..||.++++++.+..
T Consensus 57 ~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 57 NALAAADLVLIPVQPSPL 74 (104)
T ss_pred HHHHHCCEEEEeccCCHH
Confidence 446789999999987643
No 434
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.016 Score=57.04 Aligned_cols=93 Identities=25% Similarity=0.383 Sum_probs=54.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------CCceeeeeCCC-------------CceEEEEEEEE----------------
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKP-------------QTTRHRILGIC---------------- 158 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~------~~~~~~vs~~~-------------~tt~~~~~~~~---------------- 158 (413)
++-.|.+||--|+||||.+-.|. |.+...+.... ..++.++++-+
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 34479999999999999887763 33333222111 11122233221
Q ss_pred eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCC
Q 015092 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP 209 (413)
Q Consensus 159 ~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~ 209 (413)
..+++.+.++||.|-++... .+-+.+. ++..+ -..|.+|||+|++-+.
T Consensus 180 Kke~fdvIIvDTSGRh~qe~-sLfeEM~-~v~~a-i~Pd~vi~VmDasiGQ 227 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEA-SLFEEMK-QVSKA-IKPDEIIFVMDASIGQ 227 (483)
T ss_pred HhcCCcEEEEeCCCchhhhH-HHHHHHH-HHHhh-cCCCeEEEEEeccccH
Confidence 23456799999999654332 2323332 22233 3689999999998764
No 435
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.55 E-value=0.041 Score=52.66 Aligned_cols=145 Identities=13% Similarity=0.118 Sum_probs=72.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeC-------CCCch-hhhhhHHHHHHH
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDT-------PGIIE-KKIHMLDSMMMK 187 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~Dt-------pG~~~-~~~~~l~~~~~~ 187 (413)
|-|+|.|.|++||||+.+.|...-.. .+..+.+++. -.+.+ ......+..+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~-------------------~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s 62 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE-------------------KGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKS 62 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH-------------------TT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh-------------------cCCEEEEEcccccccchhhhhchhhhHHHHHHHHH
Confidence 36899999999999999998652111 0111222221 11111 112334455566
Q ss_pred HHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCC---------------hhhHHHHHHHHH
Q 015092 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK---------------PGEIAKKLEWYE 252 (413)
Q Consensus 188 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~---------------~~~~~~~~~~~~ 252 (413)
.+.+.+..-+ |+++|...-.......++.+.+. .+.+..+|...+++.. .+.+......++
T Consensus 63 ~v~r~ls~~~--iVI~Dd~nYiKg~RYelyclAr~--~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE 138 (270)
T PF08433_consen 63 AVERALSKDT--IVILDDNNYIKGMRYELYCLARA--YGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFE 138 (270)
T ss_dssp HHHHHHTT-S--EEEE-S---SHHHHHHHHHHHHH--TT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH--
T ss_pred HHHHhhccCe--EEEEeCCchHHHHHHHHHHHHHH--cCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhc
Confidence 6666665543 44688888778888888888887 7889888888887631 112223333333
Q ss_pred hcCC----CccEEEcc-cCCCCCHHHHHHHHHhhCC
Q 015092 253 KFTD----VDEVIPVS-AKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 253 ~~~~----~~~v~~iS-A~~g~gv~~L~~~l~~~l~ 283 (413)
.... -.|.|.+. .-....++++.+.|...-+
T Consensus 139 ~P~~~nrWD~plf~i~~~~~~~~~~~I~~~l~~~~~ 174 (270)
T PF08433_consen 139 EPDPKNRWDSPLFTIDSSDEELPLEEIWNALFENKP 174 (270)
T ss_dssp -TTSS-GGGS-SEEEE-TTS---HHHHHHHHHHHHT
T ss_pred CCCCCCCccCCeEEEecCCCCCCHHHHHHHHHhcCC
Confidence 3221 12455554 5666778899988865443
No 436
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.011 Score=54.62 Aligned_cols=116 Identities=14% Similarity=0.156 Sum_probs=66.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCcee----eeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLS----IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~----~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
|+|.++|.--+||||+-.....+-.. ...++...|++.+. ..-..+.+||.||....-...+. ...
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is----~sfinf~v~dfPGQ~~~Fd~s~D------~e~ 97 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHIS----NSFINFQVWDFPGQMDFFDPSFD------YEM 97 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhh----hhhcceEEeecCCccccCCCccC------HHH
Confidence 46999999999999976544332211 11222222332221 12246889999996542111111 122
Q ss_pred hcccccEEEEEeeCCCCCchHHHHHH-HHccc--cCCCCCEEEEEecCCCCCh
Q 015092 192 AGINADCIVVLVDACKAPERIDEILE-EGVGD--HKDKLPILLVLNKKDLIKP 241 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~~~~~~l~-~~l~~--~~~~~p~ilV~NK~Dl~~~ 241 (413)
.++.+-+++||+|+.+........+. ...+. ..+++.+=+.+.|+|-...
T Consensus 98 iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 98 IFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred HHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 36789999999998654322211121 11222 2367888899999998754
No 437
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.0033 Score=70.64 Aligned_cols=119 Identities=21% Similarity=0.210 Sum_probs=64.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceee-------eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh--h----hhHH
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--I----HMLD 182 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~-------vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~--~----~~l~ 182 (413)
|=-.|||+||+||||++... |.++.+ ....++ |+++- -+-+..-++|||.|-.-.. . ....
T Consensus 126 PWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g-T~~cd----wwf~deaVlIDtaGry~~q~s~~~~~~~~W 199 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG-TRNCD----WWFTDEAVLIDTAGRYITQDSADEVDRAEW 199 (1188)
T ss_pred CceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC-CcccC----cccccceEEEcCCcceecccCcchhhHHHH
Confidence 35678899999999988653 333222 111222 33322 1223467899999943211 1 1111
Q ss_pred HHHHHHHH--hhcccccEEEEEeeCCCCCch---HH--------HHHHHHccccCCCCCEEEEEecCCCCC
Q 015092 183 SMMMKNVR--SAGINADCIVVLVDACKAPER---ID--------EILEEGVGDHKDKLPILLVLNKKDLIK 240 (413)
Q Consensus 183 ~~~~~~~~--~~~~~aD~vl~VvD~~~~~~~---~~--------~~l~~~l~~~~~~~p~ilV~NK~Dl~~ 240 (413)
..+....+ +..+-.+.||+.+|+.+-... .. ..+.++-..+....|+.|++||+|+..
T Consensus 200 ~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 200 LGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 11222111 224567899999998643211 11 112222222335799999999999975
No 438
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.49 E-value=0.0018 Score=58.54 Aligned_cols=52 Identities=15% Similarity=0.117 Sum_probs=35.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEE
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILY 168 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~ 168 (413)
...|+|+|++|||||||+++|+..........+.|||.+-.+.. +|..+.|+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~--~G~dY~fv 55 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDE--EGKTYFFL 55 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCC--CCceeEeC
Confidence 34799999999999999999987643333445677776544433 23344444
No 439
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.45 E-value=0.0092 Score=49.70 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 015092 118 VAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 118 v~ivG~~~~GKSsLln~L~~~ 138 (413)
|.+.|+||+|||+++..+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 678999999999999998654
No 440
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.38 E-value=0.0038 Score=52.25 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=19.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCc
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
...+.|.|.+|+|||++++.+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999997754
No 441
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.38 E-value=0.023 Score=50.22 Aligned_cols=107 Identities=18% Similarity=0.185 Sum_probs=60.1
Q ss_pred EEEcCCCCCHHHHHHHH------hCCceeeeeCCCCc-eEEE-EEE---------E---EeCCCeeEEEEeCCCCchhhh
Q 015092 119 AVLGKPNVGKSTLANQM------IGQKLSIVTNKPQT-TRHR-ILG---------I---CSGPEYQMILYDTPGIIEKKI 178 (413)
Q Consensus 119 ~ivG~~~~GKSsLln~L------~~~~~~~vs~~~~t-t~~~-~~~---------~---~~~~~~~~~l~DtpG~~~~~~ 178 (413)
..-+.+|+||||+.-.| .|.++..+.-.++. +... ... . ....++.++++|||+.....
T Consensus 4 v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~- 82 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWRGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDE- 82 (169)
T ss_pred EecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHhCcchHHHHHHHHHHhhcCCCCEEEEeCCCCCcHH-
Confidence 34467999999977665 35555444322222 1110 000 0 11246789999999853211
Q ss_pred hhHHHHHHHHHHhh--cccccEEEEEeeCCCCCchHHHHHHHHccccCCCCC-EEEEEecCCC
Q 015092 179 HMLDSMMMKNVRSA--GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDL 238 (413)
Q Consensus 179 ~~l~~~~~~~~~~~--~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilV~NK~Dl 238 (413)
.... +..+|.+++|+.+..........+.+.++. .+.+ .-+|+|+++.
T Consensus 83 ----------~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~--~~~~~~gvv~N~~~~ 133 (169)
T cd02037 83 ----------HLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKK--VNIPILGVVENMSYF 133 (169)
T ss_pred ----------HHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHh--cCCCeEEEEEcCCcc
Confidence 1111 257899999998765433333444555555 3444 4578999985
No 442
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.37 E-value=0.006 Score=59.19 Aligned_cols=99 Identities=23% Similarity=0.319 Sum_probs=53.8
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccE-----EEEEeeCCCCCchHH--HHHHHHccccCCCCCEEEEEe
Q 015092 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC-----IVVLVDACKAPERID--EILEEGVGDHKDKLPILLVLN 234 (413)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~-----vl~VvD~~~~~~~~~--~~l~~~l~~~~~~~p~ilV~N 234 (413)
+..++|+||+|-.+...+.+. .+ +.+.+.+...+. +++++|++.|..... +.+.+.. + -.-++++
T Consensus 221 ~~DvvliDTAGRLhnk~nLM~-EL-~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav-----~-l~GiIlT 292 (340)
T COG0552 221 GIDVVLIDTAGRLHNKKNLMD-EL-KKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV-----G-LDGIILT 292 (340)
T ss_pred CCCEEEEeCcccccCchhHHH-HH-HHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc-----C-CceEEEE
Confidence 457999999997665444333 22 223333443333 888889998754322 2222221 1 2357899
Q ss_pred cCCCCChhh-HHHHHHHHHhcCCCccEEEcccCCCCCHHHHH
Q 015092 235 KKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (413)
Q Consensus 235 K~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~ 275 (413)
|+|-..... +..+...+ + .|+.++. -|+++++|.
T Consensus 293 KlDgtAKGG~il~I~~~l----~-~PI~fiG--vGE~~~DL~ 327 (340)
T COG0552 293 KLDGTAKGGIILSIAYEL----G-IPIKFIG--VGEGYDDLR 327 (340)
T ss_pred ecccCCCcceeeeHHHHh----C-CCEEEEe--CCCChhhcc
Confidence 999643322 22222222 1 3666654 467777764
No 443
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=96.35 E-value=0.0022 Score=68.56 Aligned_cols=95 Identities=19% Similarity=0.213 Sum_probs=61.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEE-------------------------------------
Q 015092 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL------------------------------------- 155 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~------------------------------------- 155 (413)
...|.|++||..++||||.++.++|..+...+....|-+..+.
T Consensus 27 i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e 106 (657)
T KOG0446|consen 27 IPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE 106 (657)
T ss_pred ccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhh
Confidence 4567999999999999999999999665421111111100000
Q ss_pred ------------------EEEeCCCeeEEEEeCCCCch----hhhhhHHHHHHHHHHhhcccccEEEEEeeCCC
Q 015092 156 ------------------GICSGPEYQMILYDTPGIIE----KKIHMLDSMMMKNVRSAGINADCIVVLVDACK 207 (413)
Q Consensus 156 ------------------~~~~~~~~~~~l~DtpG~~~----~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~ 207 (413)
.+..-.-..++++|+||+.. ..+..+..........++....++++.|...+
T Consensus 107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an 180 (657)
T KOG0446|consen 107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPAN 180 (657)
T ss_pred HHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchh
Confidence 00111112478999999854 22345666677778888889999888887654
No 444
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.20 E-value=0.019 Score=55.31 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=67.7
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh-h-hh-H-----
Q 015092 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK-I-HM-L----- 181 (413)
Q Consensus 110 ~~~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~-~-~~-l----- 181 (413)
++..|.+.+.|+|.+|.|||++++++....-.. .+ ... ....++.+.+|.-.... + .. +
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d-~~~-----------~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SD-EDA-----------ERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CC-CCC-----------ccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 455677899999999999999999998755321 11 111 11467777887632211 0 00 0
Q ss_pred -------HHHHHHHHHhhcccccEEEEEeeCCCCC----chHHHHHHHHccccC--CCCCEEEEEec
Q 015092 182 -------DSMMMKNVRSAGINADCIVVLVDACKAP----ERIDEILEEGVGDHK--DKLPILLVLNK 235 (413)
Q Consensus 182 -------~~~~~~~~~~~~~~aD~vl~VvD~~~~~----~~~~~~l~~~l~~~~--~~~p~ilV~NK 235 (413)
.......+...++.+.+=++|||--+.. ......+++.++.+. ..+|+|.|+++
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 1123344556778888889999965432 222334444444432 57888888765
No 445
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.17 E-value=0.012 Score=56.56 Aligned_cols=89 Identities=21% Similarity=0.301 Sum_probs=59.9
Q ss_pred HHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEccc
Q 015092 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (413)
Q Consensus 186 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA 265 (413)
.+.+...++..|++|=|-||.-++......+...+ ..+|.|+|+||+||.+..+.....+.++.... ..++..++
T Consensus 37 lr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~----~~k~riiVlNK~DLad~~~~k~~iq~~~~~~~-~~~~~~~c 111 (335)
T KOG2485|consen 37 LRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFL----PPKPRIIVLNKMDLADPKEQKKIIQYLEWQNL-ESYIKLDC 111 (335)
T ss_pred HHHHHhhcccccEEEEeeccccCCccccHHHHHhc----CCCceEEEEecccccCchhhhHHHHHHHhhcc-cchhhhhh
Confidence 34556668999999999999988876666555554 47899999999999987666666666655432 23344444
Q ss_pred CCCC--CHHHHHHHHH
Q 015092 266 KYGH--GVEDIRDWIL 279 (413)
Q Consensus 266 ~~g~--gv~~L~~~l~ 279 (413)
.... ++..++..+.
T Consensus 112 ~~~~~~~v~~l~~il~ 127 (335)
T KOG2485|consen 112 NKDCNKQVSPLLKILT 127 (335)
T ss_pred hhhhhhccccHHHHHH
Confidence 4333 3555554443
No 446
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=96.15 E-value=0.0052 Score=62.74 Aligned_cols=91 Identities=25% Similarity=0.300 Sum_probs=58.0
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCceeeee---CCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHH
Q 015092 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVT---NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK 187 (413)
Q Consensus 111 ~~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs---~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~ 187 (413)
.+..-..|+|+|+-.+|||||+|.|.|.++.... ...+||+-.....+..-...+.+.|.-|--......=...-.+
T Consensus 33 ~Gl~YhVVavmG~QSSGKSTLLN~LFgTnF~~MDA~~gRqQTTKGIWlar~~~i~p~i~vmDvEGTDGrERGEDqdFErk 112 (772)
T KOG2203|consen 33 CGLSYHVVAVMGSQSSGKSTLLNHLFGTNFREMDAFKGRQQTTKGIWLARCAGIEPCILVMDVEGTDGRERGEDQDFERK 112 (772)
T ss_pred cCcceeEEEEecCcccchHHHHHHHhccChHHHHhhhccccccchhhHHhhcCCCCceEEEecccCCcccccccccHHHH
Confidence 3445568999999999999999999999876321 2445666555554554445688899888522111111222334
Q ss_pred HHHhhcccccEEEE
Q 015092 188 NVRSAGINADCIVV 201 (413)
Q Consensus 188 ~~~~~~~~aD~vl~ 201 (413)
.+.-++.-+|++|+
T Consensus 113 sALFaiavSevviv 126 (772)
T KOG2203|consen 113 SALFAIAVSEVVIV 126 (772)
T ss_pred hHHHHHhhhheehh
Confidence 45666777787764
No 447
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=96.10 E-value=0.034 Score=51.99 Aligned_cols=66 Identities=9% Similarity=0.016 Sum_probs=40.1
Q ss_pred CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCc-hHH---HHHHHHccccCCCCCEEEEEecC
Q 015092 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-RID---EILEEGVGDHKDKLPILLVLNKK 236 (413)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~-~~~---~~l~~~l~~~~~~~p~ilV~NK~ 236 (413)
+++.++|+||||... .....++..||.+|..+.++...- ... ..+.+..+....+.|..+++|.+
T Consensus 82 ~~yD~iiID~pp~~~-----------~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~ 150 (231)
T PRK13849 82 QGFDYALADTHGGSS-----------ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRV 150 (231)
T ss_pred CCCCEEEEeCCCCcc-----------HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEec
Confidence 357899999999532 123445678999998877643221 111 12222222222567888999998
Q ss_pred C
Q 015092 237 D 237 (413)
Q Consensus 237 D 237 (413)
+
T Consensus 151 ~ 151 (231)
T PRK13849 151 P 151 (231)
T ss_pred c
Confidence 7
No 448
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.10 E-value=0.0043 Score=56.92 Aligned_cols=39 Identities=31% Similarity=0.328 Sum_probs=27.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEE
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH 152 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~ 152 (413)
+...|+|+|++|+|||||+++|...........+.||+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~ 50 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRP 50 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCC
Confidence 344788999999999999999975433323444555554
No 449
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.04 E-value=0.005 Score=57.46 Aligned_cols=24 Identities=42% Similarity=0.666 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.|+|+|++|+|||||+|.+.|-.
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999998754
No 450
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.01 E-value=0.0056 Score=50.60 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~ 138 (413)
.|+|.|.|||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 451
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.00 E-value=0.038 Score=52.62 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=34.8
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHcccc--CCCCCE-EEEEecCCC
Q 015092 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH--KDKLPI-LLVLNKKDL 238 (413)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~--~~~~p~-ilV~NK~Dl 238 (413)
+.++++||||.... . ....++..||.+|+++.++...-.....+.+.++.. ..+.++ .+|+|++|.
T Consensus 116 yD~vIIDt~g~~~~--~--------~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 116 YDVILFDVLGDVVC--G--------GFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred CCEEEEeCCCCccc--c--------cchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 56788888874211 0 122336689999999877543211111222222111 134543 478999984
No 452
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.99 E-value=0.044 Score=45.71 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
..+.|.|++|+|||+|++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999997643
No 453
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=95.98 E-value=0.019 Score=58.81 Aligned_cols=151 Identities=15% Similarity=0.199 Sum_probs=88.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
.+++|||...+|||.|+-+.+...+. +...|...+.....++.....-+.+-|-+|..+.. + ...
T Consensus 31 lk~givg~~~sgktalvhr~ltgty~-~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~aQ-------f-------t~w 95 (749)
T KOG0705|consen 31 LKLGIVGTSQSGKTALVHRYLTGTYT-QDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDAQ-------F-------CQW 95 (749)
T ss_pred hheeeeecccCCceeeeeeeccceec-cccCCcCccceeeEEeeccceEeeeecccCCchhh-------h-------hhh
Confidence 38999999999999999987655544 23334444555555566666667777877732211 1 346
Q ss_pred ccEEEEEeeCCCCCchHHHHH--HHHccc-cCCCCCEEEEEecCCCCC--hhh-HHHHHHHHHhcCCCccEEEcccCCCC
Q 015092 196 ADCIVVLVDACKAPERIDEIL--EEGVGD-HKDKLPILLVLNKKDLIK--PGE-IAKKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 196 aD~vl~VvD~~~~~~~~~~~l--~~~l~~-~~~~~p~ilV~NK~Dl~~--~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
+|++|||+...+-........ ..+... .....|+++|+++-=... .+. ..............+.+|.++|.+|.
T Consensus 96 vdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGl 175 (749)
T KOG0705|consen 96 VDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGL 175 (749)
T ss_pred ccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhh
Confidence 778888877654332222222 111111 014577777777633211 111 11112222233344578999999999
Q ss_pred CHHHHHHHHHhh
Q 015092 270 GVEDIRDWILTK 281 (413)
Q Consensus 270 gv~~L~~~l~~~ 281 (413)
++...|..+...
T Consensus 176 nv~rvf~~~~~k 187 (749)
T KOG0705|consen 176 NVERVFQEVAQK 187 (749)
T ss_pred hHHHHHHHHHHH
Confidence 999988877653
No 454
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.98 E-value=0.007 Score=44.25 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 015092 117 YVAVLGKPNVGKSTLANQMI 136 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~ 136 (413)
...|.|+.|+|||||++++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999974
No 455
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.93 E-value=0.0067 Score=54.00 Aligned_cols=54 Identities=20% Similarity=0.259 Sum_probs=33.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCC
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG 172 (413)
.++|+|++|+|||||++.|.+...........+|+....+. ..+..+.+++...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~ 56 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEE 56 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHH
Confidence 68999999999999999998854332233334454433222 1234455555433
No 456
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.90 E-value=0.048 Score=54.78 Aligned_cols=90 Identities=23% Similarity=0.400 Sum_probs=51.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh------CCceeeeeCCCCc-------------eEEEEEEE----------------Ee
Q 015092 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQT-------------TRHRILGI----------------CS 159 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~------~~~~~~vs~~~~t-------------t~~~~~~~----------------~~ 159 (413)
+..|.++|--|+||||..-.|. +.++..|+..... +.....+. ..
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak 179 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAK 179 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHH
Confidence 3479999999999999776663 3333222211100 00011111 11
Q ss_pred CCCeeEEEEeCCCCchhhhhhHHHHHHHHHH--hhcccccEEEEEeeCCCCC
Q 015092 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR--SAGINADCIVVLVDACKAP 209 (413)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~--~~~~~aD~vl~VvD~~~~~ 209 (413)
..++.++++||+|-.+- ++.++.+.. ...-+.|=+|||+|++-|-
T Consensus 180 ~~~~DvvIvDTAGRl~i-----de~Lm~El~~Ik~~~~P~E~llVvDam~GQ 226 (451)
T COG0541 180 EEGYDVVIVDTAGRLHI-----DEELMDELKEIKEVINPDETLLVVDAMIGQ 226 (451)
T ss_pred HcCCCEEEEeCCCcccc-----cHHHHHHHHHHHhhcCCCeEEEEEecccch
Confidence 22357999999995432 222333322 2245789999999998774
No 457
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.88 E-value=0.0044 Score=55.33 Aligned_cols=51 Identities=22% Similarity=0.276 Sum_probs=34.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEe
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYD 169 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~D 169 (413)
..+++.|++|||||||+.+|+... ...-+...|||.+-.+... |..+.|++
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~--G~dY~Fvs 55 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVD--GVDYFFVT 55 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcC--CceeEeCC
Confidence 368999999999999999998876 4333445566665544433 34444443
No 458
>PHA02518 ParA-like protein; Provisional
Probab=95.87 E-value=0.073 Score=48.38 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=25.5
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCC
Q 015092 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK 207 (413)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~ 207 (413)
.+.++++||||-.. .....++..||.+|+++..+.
T Consensus 76 ~~d~viiD~p~~~~-----------~~~~~~l~~aD~viip~~ps~ 110 (211)
T PHA02518 76 GYDYVVVDGAPQDS-----------ELARAALRIADMVLIPVQPSP 110 (211)
T ss_pred cCCEEEEeCCCCcc-----------HHHHHHHHHCCEEEEEeCCCh
Confidence 35799999999421 123455779999999998764
No 459
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.82 E-value=0.0075 Score=51.61 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=31.2
Q ss_pred EEEEcCCCCCHHHHHHHHhCCce-eeeeCCCCceEEEEEEEEeCCCeeEEEEeCC
Q 015092 118 VAVLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHRILGICSGPEYQMILYDTP 171 (413)
Q Consensus 118 v~ivG~~~~GKSsLln~L~~~~~-~~vs~~~~tt~~~~~~~~~~~~~~~~l~Dtp 171 (413)
|+|+|++|+|||||++.|..... ........+|+....+. .++..+.++|..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~ 54 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKE 54 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHH
Confidence 78999999999999999987521 11223334555433222 234455555543
No 460
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=95.82 E-value=0.15 Score=47.45 Aligned_cols=100 Identities=9% Similarity=0.133 Sum_probs=55.8
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCC----chHHHHHHHHccccCCCCCEEEEEecCC
Q 015092 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKD 237 (413)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~----~~~~~~l~~~l~~~~~~~p~ilV~NK~D 237 (413)
++.++|+||+|.... + ...++..+|+||+=.-.+... .....++.+..+...+.+|.-+++|++.
T Consensus 83 ~~d~VlvDleG~as~--------~---~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~ 151 (231)
T PF07015_consen 83 GFDFVLVDLEGGASE--------L---NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVP 151 (231)
T ss_pred CCCEEEEeCCCCCch--------h---HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCC
Confidence 457899999995321 1 223366899887754333211 1122344444444447899999999997
Q ss_pred CCChhhHHHHH-HHHHhcCCCccEEEcccCCCCCHHHHHH
Q 015092 238 LIKPGEIAKKL-EWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (413)
Q Consensus 238 l~~~~~~~~~~-~~~~~~~~~~~v~~iSA~~g~gv~~L~~ 276 (413)
-.......... +.+.. .|+|.+.-.......+++.
T Consensus 152 ~~~~~~~~~~~~e~~~~----lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 152 AARLTRAQRIISEQLES----LPVLDTELHERDAFRAMFS 187 (231)
T ss_pred cchhhHHHHHHHHHHhc----CCccccccccHHHHHHHHH
Confidence 44222222222 22322 4777777766555555444
No 461
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.81 E-value=0.008 Score=50.85 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCce
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKL 140 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~ 140 (413)
-.++|+|++|+|||||++.|.|...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CEEEEEccCCCccccceeeeccccc
Confidence 3899999999999999999998654
No 462
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.77 E-value=0.004 Score=55.82 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~ 138 (413)
+|.|+|+||+||||+...|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999765
No 463
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.70 E-value=0.008 Score=53.55 Aligned_cols=24 Identities=46% Similarity=0.621 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-+|+|+|++|+|||||+|-+.|-.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhcc
Confidence 389999999999999999998754
No 464
>PRK04195 replication factor C large subunit; Provisional
Probab=95.70 E-value=0.14 Score=53.34 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 015092 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
...+.|.|+||+||||++++|...
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999664
No 465
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.69 E-value=0.0085 Score=55.52 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.|+|+|++|+|||||+|.|-+-.
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 389999999999999999987643
No 466
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.66 E-value=0.2 Score=47.14 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 015092 118 VAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 118 v~ivG~~~~GKSsLln~L~~ 137 (413)
|.++|.||+||||+...|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999998853
No 467
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.56 E-value=0.052 Score=54.07 Aligned_cols=23 Identities=43% Similarity=0.593 Sum_probs=19.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMI 136 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~ 136 (413)
..++|+++|+.++|||||...|.
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~La 94 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLA 94 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHH
Confidence 45699999999999999876553
No 468
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=95.56 E-value=0.0083 Score=65.38 Aligned_cols=83 Identities=20% Similarity=0.305 Sum_probs=50.9
Q ss_pred EcCCCCCHHHHHHHHhCCceeeeeC--CCCceEEEEEEEEeC---CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015092 121 LGKPNVGKSTLANQMIGQKLSIVTN--KPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 121 vG~~~~GKSsLln~L~~~~~~~vs~--~~~tt~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
+|.-++|||||+|.|.|..+..-.. ..+||+-...+.... ....+.++|+-|........-...-.+.+.-++.-
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~~er~~~~~fe~~~alf~la~ 80 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDGRERGEDQDFERKSALFALAV 80 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCccccccccccccchhhHHHhccccccCCCceEEEeCCCCCchhhccccchHHHHHHHHHHh
Confidence 4889999999999999999873222 334665433332222 23578899999863322111112223445666778
Q ss_pred ccEEEEEe
Q 015092 196 ADCIVVLV 203 (413)
Q Consensus 196 aD~vl~Vv 203 (413)
+|++|+=+
T Consensus 81 s~~~iiN~ 88 (742)
T PF05879_consen 81 SDVLIINM 88 (742)
T ss_pred hhheeeeh
Confidence 88887654
No 469
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.53 E-value=0.014 Score=53.24 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
..|+|+|++|+|||||++.|.+..
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 379999999999999999998753
No 470
>PRK08233 hypothetical protein; Provisional
Probab=95.37 E-value=0.014 Score=51.86 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
+...|+|.|.||+|||||.++|...
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999999753
No 471
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.37 E-value=0.014 Score=43.54 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 015092 118 VAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 118 v~ivG~~~~GKSsLln~L~~~ 138 (413)
|++.|.+|+||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998754
No 472
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=95.35 E-value=0.16 Score=47.70 Aligned_cols=64 Identities=20% Similarity=0.211 Sum_probs=38.4
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCC
Q 015092 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (413)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl 238 (413)
+.++++|||+-... ....++..+|.+|+++.+....-.....+.+.++.. ...+..+++|+++.
T Consensus 112 ~D~viiD~p~~~~~-----------~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~-~~~~~~iviN~~~~ 175 (261)
T TIGR01968 112 FDYVIIDCPAGIES-----------GFRNAVAPADEAIVVTTPEVSAVRDADRVIGLLEAK-GIEKIHLIVNRLRP 175 (261)
T ss_pred CCEEEEeCCCCcCH-----------HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHHHc-CCCceEEEEeCcCc
Confidence 45889999874321 122345689999999987543222223333434332 22467889999985
No 473
>PRK07261 topology modulation protein; Provisional
Probab=95.34 E-value=0.013 Score=52.12 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015092 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
+|+|+|.||+|||||...|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 474
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.33 E-value=0.11 Score=52.33 Aligned_cols=23 Identities=43% Similarity=0.678 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
+|||||+.|||||||+..|+|.-
T Consensus 615 RiaIVGPNGVGKSTlLkLL~Gkl 637 (807)
T KOG0066|consen 615 RIAIVGPNGVGKSTLLKLLIGKL 637 (807)
T ss_pred eeEEECCCCccHHHHHHHHhcCC
Confidence 89999999999999999999864
No 475
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.33 E-value=0.014 Score=50.08 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
|.|+|+|+.|+|||||+..|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988653
No 476
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=95.32 E-value=0.024 Score=53.98 Aligned_cols=59 Identities=27% Similarity=0.362 Sum_probs=38.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc--eeeeeCCCCceEEEEEEE---EeCCCeeEEEEeCCCCch
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQK--LSIVTNKPQTTRHRILGI---CSGPEYQMILYDTPGIIE 175 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~--~~~vs~~~~tt~~~~~~~---~~~~~~~~~l~DtpG~~~ 175 (413)
.|+|+|...+|||.|+|.|++.. +........+|.-..... -..++..+.++||.|+.+
T Consensus 23 vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 23 VVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp EEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred EEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence 79999999999999999999753 221112223333222111 123467899999999865
No 477
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=95.31 E-value=0.18 Score=47.11 Aligned_cols=64 Identities=17% Similarity=0.107 Sum_probs=37.9
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCC-EEEEEecCCCC
Q 015092 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLI 239 (413)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilV~NK~Dl~ 239 (413)
+.++++|||+-... ....++..||.+|+|++++...-.......+..+. .+.+ ..+|+|+.+..
T Consensus 109 yD~VIiD~p~~~~~-----------~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~--~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 109 TDFLLIDAPAGLER-----------DAVTALAAADELLLVVNPEISSITDALKTKIVAEK--LGTAILGVVLNRVTRD 173 (251)
T ss_pred CCEEEEeCCCccCH-----------HHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHh--cCCceEEEEEECCCch
Confidence 56899999974321 12333568999999998764322211122233333 3444 56899999864
No 478
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.29 E-value=0.016 Score=51.55 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
+.+.++|+|.+|+|||||+++|+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4568999999999999999999754
No 479
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=95.29 E-value=0.014 Score=52.23 Aligned_cols=73 Identities=26% Similarity=0.261 Sum_probs=44.2
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCC-CCEEEEEecCCCCCh
Q 015092 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLIKP 241 (413)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~-~p~ilV~NK~Dl~~~ 241 (413)
+.+.++|||+..... +..++..+|.+|++++.+...-.....+.+.++..... ....+|+||++....
T Consensus 95 yD~iiiD~~~~~~~~-----------~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~~ 163 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP-----------VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPGNE 163 (195)
T ss_dssp SSEEEEEECSSSSHH-----------HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCCH
T ss_pred ccceeecccccccHH-----------HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCCcc
Confidence 789999999853321 34446799999999987642222222233334331111 356889999987655
Q ss_pred hhHHH
Q 015092 242 GEIAK 246 (413)
Q Consensus 242 ~~~~~ 246 (413)
.....
T Consensus 164 ~~~~~ 168 (195)
T PF01656_consen 164 SKLQE 168 (195)
T ss_dssp HHHHH
T ss_pred chHHH
Confidence 44443
No 480
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.24 E-value=0.011 Score=51.92 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~ 138 (413)
+|+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5899999999999999999755
No 481
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.17 E-value=0.017 Score=52.94 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
+...|+|.|.+|+|||||++.|.+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5568999999999999999998764
No 482
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.17 E-value=0.015 Score=53.20 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
+...|+|+|++|+|||||++.|.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3447999999999999999999763
No 483
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=95.17 E-value=0.077 Score=51.37 Aligned_cols=19 Identities=42% Similarity=0.578 Sum_probs=16.3
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 015092 117 YVAVLGKPNVGKSTLANQM 135 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L 135 (413)
++++.|..||||||+.-.|
T Consensus 2 ~ia~~gKGGVGKTTta~nL 20 (290)
T CHL00072 2 KLAVYGKGGIGKSTTSCNI 20 (290)
T ss_pred eEEEECCCCCcHHHHHHHH
Confidence 5899999999999977654
No 484
>PRK08181 transposase; Validated
Probab=95.15 E-value=0.031 Score=53.46 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015092 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..+.++|++|+|||.|+.++..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~ 128 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL 128 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH
Confidence 3699999999999999999864
No 485
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.12 E-value=0.017 Score=49.15 Aligned_cols=20 Identities=40% Similarity=0.662 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 015092 118 VAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 118 v~ivG~~~~GKSsLln~L~~ 137 (413)
|.++|.||+|||||+..|..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999873
No 486
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.12 E-value=0.02 Score=47.33 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCce
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQKL 140 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~ 140 (413)
..+.|+|+||+||||++..|...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4799999999999999999976543
No 487
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.11 E-value=0.072 Score=45.68 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 015092 118 VAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 118 v~ivG~~~~GKSsLln~L~~~ 138 (413)
++|.|.||+|||+|+..+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH
Confidence 689999999999999998654
No 488
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.08 E-value=0.14 Score=46.99 Aligned_cols=19 Identities=37% Similarity=0.651 Sum_probs=15.6
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 015092 117 YVAVLGKPNVGKSTLANQM 135 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L 135 (413)
.|++.|..||||||+.-.|
T Consensus 2 ~iav~gKGGvGKTt~~~nL 20 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNL 20 (212)
T ss_pred EEEEECCCcCcHHHHHHHH
Confidence 5888899999999966544
No 489
>PRK08118 topology modulation protein; Reviewed
Probab=95.07 E-value=0.018 Score=51.06 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~ 138 (413)
+|.|+|+||+|||||...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998653
No 490
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.05 E-value=0.019 Score=51.21 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 015092 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
+.+.|+|+|.||+||||+++.|..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999973
No 491
>PF05729 NACHT: NACHT domain
Probab=95.05 E-value=0.071 Score=46.06 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~ 138 (413)
.+.|.|.+|+||||++..+...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 5889999999999999988653
No 492
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.03 E-value=0.019 Score=52.59 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|+.|+|||||++.|.|..
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999854
No 493
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.00 E-value=0.019 Score=47.56 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 015092 118 VAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 118 v~ivG~~~~GKSsLln~L~~~ 138 (413)
|+|.|.|||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998654
No 494
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.99 E-value=0.018 Score=51.49 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|+.|+|||||++.|.|..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 389999999999999999999854
No 495
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.99 E-value=0.019 Score=53.51 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|+.|+|||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999854
No 496
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.94 E-value=0.02 Score=52.59 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|++|+|||||++.|.|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999853
No 497
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.94 E-value=0.021 Score=51.43 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
.++|+|+.|+|||||++.|.|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999998854
No 498
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.92 E-value=0.021 Score=52.56 Aligned_cols=24 Identities=42% Similarity=0.609 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015092 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|++|+|||||++.|.|..
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCc
Confidence 389999999999999999999853
No 499
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.90 E-value=0.046 Score=53.17 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
.|+++|.-|+|||||++.|.++.
T Consensus 190 VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 190 VIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred EEEeecCCCccHHHHHHHHhccC
Confidence 69999999999999999998765
No 500
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.89 E-value=0.023 Score=48.96 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 015092 117 YVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 79999999999999999998864
Done!