Query 015093
Match_columns 413
No_of_seqs 181 out of 2248
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 03:01:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015093.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015093hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0328 Predicted ATP-dependen 100.0 5.3E-65 1.2E-69 415.0 29.5 377 37-413 24-400 (400)
2 KOG0330 ATP-dependent RNA heli 100.0 4.2E-63 9E-68 421.2 32.4 371 33-404 54-425 (476)
3 KOG0331 ATP-dependent RNA heli 100.0 9.3E-62 2E-66 439.7 37.7 372 40-412 91-474 (519)
4 PRK04837 ATP-dependent RNA hel 100.0 2.4E-60 5.3E-65 445.4 40.9 373 39-412 7-388 (423)
5 PTZ00110 helicase; Provisional 100.0 2.8E-60 6E-65 453.5 41.8 376 36-412 126-510 (545)
6 PRK11776 ATP-dependent RNA hel 100.0 3.2E-59 7E-64 442.5 42.2 363 40-404 4-367 (460)
7 COG0513 SrmB Superfamily II DN 100.0 4.5E-59 9.8E-64 440.9 42.3 369 34-402 23-397 (513)
8 PTZ00424 helicase 45; Provisio 100.0 7.6E-59 1.6E-63 434.8 43.1 383 30-412 18-400 (401)
9 PRK10590 ATP-dependent RNA hel 100.0 4.6E-59 9.9E-64 439.3 41.5 363 41-404 2-370 (456)
10 PLN00206 DEAD-box ATP-dependen 100.0 6.9E-59 1.5E-63 442.9 41.7 375 35-411 116-500 (518)
11 PRK11634 ATP-dependent RNA hel 100.0 6.8E-59 1.5E-63 447.4 41.9 367 39-406 5-372 (629)
12 PRK11192 ATP-dependent RNA hel 100.0 2.1E-58 4.6E-63 434.4 43.1 364 41-404 2-370 (434)
13 PRK04537 ATP-dependent RNA hel 100.0 1.9E-58 4E-63 442.3 41.2 365 41-406 10-384 (572)
14 PRK01297 ATP-dependent RNA hel 100.0 5.9E-57 1.3E-61 428.0 45.8 365 37-402 84-458 (475)
15 KOG0333 U5 snRNP-like RNA heli 100.0 2.4E-57 5.2E-62 399.6 33.8 366 34-400 239-638 (673)
16 KOG0338 ATP-dependent RNA heli 100.0 1.4E-56 3E-61 393.4 27.4 360 39-398 180-545 (691)
17 KOG0326 ATP-dependent RNA heli 100.0 4.7E-57 1E-61 374.7 22.8 369 39-409 84-452 (459)
18 KOG0345 ATP-dependent RNA heli 100.0 2.8E-55 6.2E-60 381.9 33.9 352 40-392 4-370 (567)
19 KOG0342 ATP-dependent RNA heli 100.0 9.3E-55 2E-59 381.1 31.7 356 39-395 81-446 (543)
20 KOG0343 RNA Helicase [RNA proc 100.0 2.4E-54 5.3E-59 382.7 30.7 365 39-406 68-442 (758)
21 KOG0340 ATP-dependent RNA heli 100.0 2.2E-54 4.8E-59 363.7 28.9 368 39-407 6-382 (442)
22 KOG0335 ATP-dependent RNA heli 100.0 6.6E-54 1.4E-58 382.0 30.2 372 39-411 73-469 (482)
23 KOG0327 Translation initiation 100.0 1.6E-53 3.5E-58 363.5 27.8 383 28-413 14-397 (397)
24 KOG0339 ATP-dependent RNA heli 100.0 9E-53 2E-57 369.2 32.5 380 33-412 216-601 (731)
25 KOG0336 ATP-dependent RNA heli 100.0 1.5E-52 3.3E-57 358.9 27.5 364 45-410 225-596 (629)
26 KOG0346 RNA helicase [RNA proc 100.0 1.4E-51 3E-56 355.9 28.9 361 40-401 19-425 (569)
27 TIGR03817 DECH_helic helicase/ 100.0 2.2E-50 4.8E-55 396.0 36.9 351 46-405 20-407 (742)
28 KOG0341 DEAD-box protein abstr 100.0 4.2E-52 9E-57 353.9 18.1 376 35-412 165-555 (610)
29 KOG0332 ATP-dependent RNA heli 100.0 2.9E-50 6.3E-55 341.0 26.0 364 39-405 89-463 (477)
30 KOG0348 ATP-dependent RNA heli 100.0 7.6E-50 1.6E-54 353.0 28.5 357 40-397 136-565 (708)
31 KOG0334 RNA helicase [RNA proc 100.0 1.2E-49 2.7E-54 379.1 28.9 377 36-412 361-746 (997)
32 PLN03137 ATP-dependent DNA hel 100.0 1.5E-47 3.3E-52 373.9 40.2 342 40-394 435-795 (1195)
33 TIGR00614 recQ_fam ATP-depende 100.0 5.3E-48 1.2E-52 365.1 34.5 323 56-394 5-341 (470)
34 KOG0347 RNA helicase [RNA proc 100.0 1.3E-48 2.8E-53 346.3 20.6 370 31-402 172-586 (731)
35 PRK11057 ATP-dependent DNA hel 100.0 2.7E-46 5.9E-51 362.3 37.1 330 46-392 8-349 (607)
36 KOG4284 DEAD box protein [Tran 100.0 2E-47 4.3E-52 344.5 24.8 349 39-388 24-381 (980)
37 KOG0337 ATP-dependent RNA heli 100.0 1.5E-47 3.2E-52 329.4 21.9 364 39-403 20-385 (529)
38 PRK02362 ski2-like helicase; P 100.0 4.2E-46 9E-51 370.0 34.0 347 41-403 2-413 (737)
39 TIGR01389 recQ ATP-dependent D 100.0 1.4E-45 3E-50 358.7 34.5 321 57-393 8-338 (591)
40 KOG0350 DEAD-box ATP-dependent 100.0 6.9E-46 1.5E-50 325.6 28.3 361 39-400 126-554 (620)
41 PRK13767 ATP-dependent helicas 100.0 2.8E-45 6E-50 367.1 36.5 335 47-386 18-398 (876)
42 KOG0344 ATP-dependent RNA heli 100.0 7.6E-46 1.6E-50 332.7 24.6 364 46-409 142-518 (593)
43 COG1201 Lhr Lhr-like helicases 100.0 6.2E-45 1.4E-49 348.7 31.0 359 47-412 8-392 (814)
44 PRK00254 ski2-like helicase; P 100.0 1.1E-44 2.3E-49 359.1 33.2 333 41-387 2-389 (720)
45 PRK01172 ski2-like helicase; P 100.0 1.1E-43 2.4E-48 350.6 31.2 344 41-401 2-391 (674)
46 TIGR00580 mfd transcription-re 100.0 3.1E-42 6.7E-47 341.5 37.5 321 47-386 436-770 (926)
47 COG1111 MPH1 ERCC4-like helica 100.0 6.6E-42 1.4E-46 302.8 32.7 322 61-387 14-482 (542)
48 PRK10917 ATP-dependent DNA hel 100.0 1E-41 2.2E-46 333.8 35.9 320 49-386 249-589 (681)
49 PRK10689 transcription-repair 100.0 2.1E-41 4.5E-46 342.6 38.1 320 48-386 587-919 (1147)
50 TIGR00643 recG ATP-dependent D 100.0 3.4E-41 7.3E-46 328.2 36.2 318 49-385 223-565 (630)
51 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.1E-40 2.4E-45 321.4 33.3 316 58-383 12-388 (844)
52 COG0514 RecQ Superfamily II DN 100.0 2.3E-41 5.1E-46 313.0 27.3 328 53-394 7-345 (590)
53 PRK09751 putative ATP-dependen 100.0 2.9E-40 6.4E-45 336.0 34.0 328 82-412 1-415 (1490)
54 PHA02558 uvsW UvsW helicase; P 100.0 5.1E-40 1.1E-44 312.3 28.4 300 61-377 113-443 (501)
55 COG1202 Superfamily II helicas 100.0 8.8E-40 1.9E-44 292.0 25.7 340 39-387 193-554 (830)
56 COG1204 Superfamily II helicas 100.0 2.1E-39 4.6E-44 315.0 27.1 335 44-385 13-407 (766)
57 TIGR01970 DEAH_box_HrpB ATP-de 100.0 4.3E-38 9.3E-43 309.0 31.4 307 65-389 5-339 (819)
58 KOG0329 ATP-dependent RNA heli 100.0 9.8E-40 2.1E-44 263.5 15.6 333 40-408 42-378 (387)
59 PRK09401 reverse gyrase; Revie 100.0 1.8E-37 3.9E-42 314.8 36.0 283 58-358 77-410 (1176)
60 PHA02653 RNA helicase NPH-II; 100.0 7.5E-38 1.6E-42 300.3 31.2 310 65-390 167-518 (675)
61 TIGR00603 rad25 DNA repair hel 100.0 9.4E-38 2E-42 298.2 30.5 316 62-399 255-622 (732)
62 PRK11664 ATP-dependent RNA hel 100.0 5E-38 1.1E-42 309.3 28.9 307 65-389 8-342 (812)
63 KOG0354 DEAD-box like helicase 100.0 1.9E-38 4.1E-43 297.0 24.3 334 59-398 59-541 (746)
64 COG1205 Distinct helicase fami 100.0 2.6E-37 5.6E-42 304.6 32.2 333 48-384 56-420 (851)
65 PRK13766 Hef nuclease; Provisi 100.0 1.1E-36 2.5E-41 306.4 34.9 323 61-388 14-481 (773)
66 TIGR01587 cas3_core CRISPR-ass 100.0 6.6E-37 1.4E-41 282.0 26.2 301 79-387 1-337 (358)
67 TIGR03714 secA2 accessory Sec 100.0 1.3E-35 2.8E-40 283.6 29.2 319 63-390 69-541 (762)
68 PRK12898 secA preprotein trans 100.0 2.9E-35 6.2E-40 278.0 31.1 317 62-390 103-590 (656)
69 PRK14701 reverse gyrase; Provi 100.0 1.5E-35 3.2E-40 306.9 31.5 325 49-389 66-459 (1638)
70 TIGR03158 cas3_cyano CRISPR-as 100.0 7.7E-35 1.7E-39 265.0 30.3 289 66-371 1-357 (357)
71 COG1061 SSL2 DNA or RNA helica 100.0 1.8E-35 4E-40 275.5 25.8 297 61-378 35-382 (442)
72 PRK09200 preprotein translocas 100.0 7.8E-35 1.7E-39 280.9 30.4 321 58-390 75-545 (790)
73 TIGR00963 secA preprotein tran 100.0 9.8E-35 2.1E-39 275.8 29.7 320 58-390 53-521 (745)
74 TIGR01054 rgy reverse gyrase. 100.0 3.3E-34 7.1E-39 291.6 34.8 291 50-357 66-408 (1171)
75 KOG0351 ATP-dependent DNA heli 100.0 2.1E-34 4.5E-39 282.1 26.8 335 49-395 251-601 (941)
76 KOG0952 DNA/RNA helicase MER3/ 100.0 1.8E-34 4E-39 274.0 24.8 332 56-394 104-499 (1230)
77 COG1200 RecG RecG-like helicas 100.0 5.1E-33 1.1E-37 257.0 30.9 326 45-388 245-593 (677)
78 KOG0353 ATP-dependent DNA heli 100.0 8.8E-34 1.9E-38 242.0 23.6 339 44-394 75-475 (695)
79 PRK04914 ATP-dependent helicas 100.0 5.4E-33 1.2E-37 274.7 29.4 336 62-402 152-619 (956)
80 KOG0349 Putative DEAD-box RNA 100.0 9E-34 1.9E-38 245.6 20.7 277 109-385 287-614 (725)
81 KOG0352 ATP-dependent DNA heli 100.0 1.4E-33 3E-38 243.9 19.4 329 50-394 6-370 (641)
82 PRK11131 ATP-dependent RNA hel 100.0 2.5E-32 5.3E-37 273.8 28.8 303 64-389 76-414 (1294)
83 PRK05580 primosome assembly pr 100.0 1E-31 2.2E-36 262.4 32.2 315 62-392 144-555 (679)
84 KOG0948 Nuclear exosomal RNA h 100.0 3.4E-33 7.3E-38 256.6 17.1 308 62-386 129-539 (1041)
85 TIGR00595 priA primosomal prot 100.0 6.6E-31 1.4E-35 247.7 27.9 306 81-403 1-403 (505)
86 PRK09694 helicase Cas3; Provis 100.0 2.2E-30 4.7E-35 254.8 31.4 310 60-375 284-664 (878)
87 KOG0947 Cytoplasmic exosomal R 100.0 6.3E-31 1.4E-35 247.5 26.2 312 57-386 293-723 (1248)
88 cd00268 DEADc DEAD-box helicas 100.0 6.7E-31 1.4E-35 222.6 24.0 200 42-241 1-202 (203)
89 PRK11448 hsdR type I restricti 100.0 7.5E-31 1.6E-35 265.3 27.9 302 62-374 413-801 (1123)
90 TIGR01967 DEAH_box_HrpA ATP-de 100.0 5.1E-31 1.1E-35 265.3 26.0 304 67-389 72-407 (1283)
91 COG4098 comFA Superfamily II D 100.0 6.2E-30 1.4E-34 215.7 26.7 319 62-402 97-432 (441)
92 COG4581 Superfamily II RNA hel 100.0 3.5E-30 7.5E-35 251.1 25.7 317 54-385 112-536 (1041)
93 PRK13104 secA preprotein trans 100.0 1.1E-29 2.5E-34 244.7 28.2 317 62-390 82-591 (896)
94 KOG0951 RNA helicase BRR2, DEA 100.0 3.5E-30 7.7E-35 248.2 24.2 338 46-390 295-706 (1674)
95 COG1197 Mfd Transcription-repa 100.0 1.4E-28 2.9E-33 240.2 32.3 316 50-386 583-913 (1139)
96 PRK12904 preprotein translocas 100.0 1.2E-28 2.7E-33 237.5 29.6 316 62-390 81-577 (830)
97 PRK12906 secA preprotein trans 100.0 5.3E-29 1.1E-33 239.0 24.9 317 62-390 80-557 (796)
98 PLN03142 Probable chromatin-re 100.0 1.8E-28 3.9E-33 243.6 27.8 319 62-388 169-601 (1033)
99 COG1643 HrpA HrpA-like helicas 100.0 4.5E-28 9.8E-33 234.9 24.6 311 62-388 50-389 (845)
100 KOG0922 DEAH-box RNA helicase 100.0 7.3E-28 1.6E-32 220.8 23.4 309 62-388 51-392 (674)
101 PRK12899 secA preprotein trans 100.0 2.4E-27 5.2E-32 228.4 28.0 148 43-195 65-228 (970)
102 PRK13107 preprotein translocas 100.0 3.6E-27 7.7E-32 226.9 25.3 317 62-390 82-595 (908)
103 COG4096 HsdR Type I site-speci 100.0 1.2E-26 2.7E-31 217.7 20.8 295 61-373 164-525 (875)
104 KOG0950 DNA polymerase theta/e 99.9 2.1E-26 4.6E-31 218.3 21.2 336 47-394 208-619 (1008)
105 PF00270 DEAD: DEAD/DEAH box h 99.9 2.1E-26 4.5E-31 189.4 18.6 164 64-228 1-167 (169)
106 TIGR00348 hsdR type I site-spe 99.9 1.5E-25 3.2E-30 219.1 27.8 298 62-373 238-634 (667)
107 COG1203 CRISPR-associated heli 99.9 5.4E-26 1.2E-30 224.4 22.2 324 62-388 195-552 (733)
108 KOG0923 mRNA splicing factor A 99.9 1.6E-26 3.4E-31 210.5 15.8 312 59-385 262-605 (902)
109 KOG0385 Chromatin remodeling c 99.9 3.1E-25 6.7E-30 205.2 23.9 316 62-389 167-602 (971)
110 COG1198 PriA Primosomal protei 99.9 2.4E-24 5.3E-29 206.1 24.9 330 61-403 197-625 (730)
111 COG1110 Reverse gyrase [DNA re 99.9 7.7E-24 1.7E-28 202.2 27.4 278 61-357 81-416 (1187)
112 KOG0924 mRNA splicing factor A 99.9 1.7E-25 3.6E-30 204.4 14.9 308 61-386 355-697 (1042)
113 TIGR01407 dinG_rel DnaQ family 99.9 2.5E-22 5.4E-27 202.6 32.1 333 47-386 231-814 (850)
114 PRK12326 preprotein translocas 99.9 1.2E-22 2.6E-27 191.4 27.0 315 62-389 78-550 (764)
115 KOG1123 RNA polymerase II tran 99.9 5.7E-25 1.2E-29 194.4 10.6 313 62-396 302-663 (776)
116 KOG0920 ATP-dependent RNA heli 99.9 2.1E-23 4.6E-28 201.9 22.0 330 47-387 158-545 (924)
117 PRK12900 secA preprotein trans 99.9 2.5E-23 5.4E-28 201.4 22.1 125 264-390 581-715 (1025)
118 KOG0925 mRNA splicing factor A 99.9 6.2E-24 1.3E-28 187.3 16.0 327 39-386 24-387 (699)
119 KOG0387 Transcription-coupled 99.9 2.1E-22 4.5E-27 187.5 23.2 320 62-389 205-661 (923)
120 PRK13103 secA preprotein trans 99.9 2.7E-22 5.8E-27 193.6 24.3 316 62-390 82-595 (913)
121 TIGR00631 uvrb excinuclease AB 99.9 1.6E-21 3.4E-26 188.6 27.5 132 264-396 425-563 (655)
122 KOG0949 Predicted helicase, DE 99.9 7.5E-22 1.6E-26 187.2 21.9 159 62-225 511-673 (1330)
123 COG4889 Predicted helicase [Ge 99.9 8.7E-24 1.9E-28 198.0 8.4 326 40-373 140-572 (1518)
124 COG0556 UvrB Helicase subunit 99.9 7.2E-22 1.6E-26 176.6 20.1 172 214-394 387-565 (663)
125 KOG0390 DNA repair protein, SN 99.9 1.2E-20 2.6E-25 179.9 28.5 320 62-387 238-708 (776)
126 KOG0926 DEAH-box RNA helicase 99.9 4.5E-22 9.8E-27 185.1 17.9 304 69-386 263-704 (1172)
127 KOG0384 Chromodomain-helicase 99.9 5.6E-23 1.2E-27 199.2 12.0 328 61-397 369-824 (1373)
128 smart00487 DEXDc DEAD-like hel 99.9 1E-20 2.3E-25 159.9 21.8 188 57-245 3-192 (201)
129 PRK05298 excinuclease ABC subu 99.9 3.1E-20 6.6E-25 181.2 26.5 145 265-410 430-590 (652)
130 PRK12903 secA preprotein trans 99.9 2.3E-20 4.9E-25 178.6 24.9 316 62-390 78-543 (925)
131 KOG0392 SNF2 family DNA-depend 99.9 7.9E-21 1.7E-25 184.0 21.5 327 62-397 975-1466(1549)
132 PRK07246 bifunctional ATP-depe 99.9 2.9E-19 6.3E-24 178.0 30.4 313 62-386 245-783 (820)
133 KOG1000 Chromatin remodeling p 99.9 6.4E-21 1.4E-25 168.7 15.9 327 60-399 196-618 (689)
134 CHL00122 secA preprotein trans 99.9 3.2E-19 6.9E-24 171.8 25.8 276 58-346 73-491 (870)
135 KOG4150 Predicted ATP-dependen 99.8 7.4E-20 1.6E-24 164.7 18.0 331 51-385 275-639 (1034)
136 KOG0389 SNF2 family DNA-depend 99.8 3.2E-19 7E-24 166.3 20.0 321 62-389 399-891 (941)
137 TIGR03117 cas_csf4 CRISPR-asso 99.8 1.5E-17 3.2E-22 158.6 30.6 116 268-386 460-616 (636)
138 PRK12902 secA preprotein trans 99.8 4.4E-18 9.6E-23 163.7 25.8 273 62-346 85-506 (939)
139 KOG0386 Chromatin remodeling c 99.8 7.6E-20 1.7E-24 174.4 12.1 321 61-388 393-838 (1157)
140 PRK08074 bifunctional ATP-depe 99.8 4.4E-17 9.6E-22 165.4 30.6 109 278-386 751-893 (928)
141 cd00046 DEXDc DEAD-like helica 99.8 3.3E-18 7.1E-23 136.2 16.9 144 78-223 1-144 (144)
142 cd00079 HELICc Helicase superf 99.8 1.3E-18 2.7E-23 136.5 14.2 118 265-382 12-131 (131)
143 KOG0953 Mitochondrial RNA heli 99.8 3.3E-18 7.1E-23 153.9 16.7 281 80-403 194-490 (700)
144 PF04851 ResIII: Type III rest 99.8 7.9E-19 1.7E-23 146.4 11.7 152 62-224 3-183 (184)
145 PRK12901 secA preprotein trans 99.8 8.2E-17 1.8E-21 156.7 20.6 124 264-390 611-745 (1112)
146 COG1199 DinG Rad3-related DNA 99.8 4.1E-16 8.8E-21 154.9 26.1 132 270-405 471-638 (654)
147 PF00271 Helicase_C: Helicase 99.8 4.2E-18 9.1E-23 120.0 8.5 78 297-374 1-78 (78)
148 TIGR02562 cas3_yersinia CRISPR 99.7 3E-16 6.5E-21 153.6 22.4 322 61-388 407-896 (1110)
149 KOG1002 Nucleotide excision re 99.7 6.9E-16 1.5E-20 137.2 21.8 118 280-397 639-761 (791)
150 KOG0951 RNA helicase BRR2, DEA 99.7 6.7E-16 1.4E-20 150.7 23.2 310 63-394 1144-1502(1674)
151 TIGR00604 rad3 DNA repair heli 99.7 4E-15 8.6E-20 147.9 28.9 74 58-131 6-83 (705)
152 KOG4439 RNA polymerase II tran 99.7 2.2E-16 4.8E-21 145.8 17.0 123 266-388 730-860 (901)
153 PRK11747 dinG ATP-dependent DN 99.7 2E-14 4.4E-19 141.7 29.6 106 278-386 533-674 (697)
154 PRK14873 primosome assembly pr 99.7 4.3E-15 9.3E-20 143.8 24.0 293 81-392 164-544 (665)
155 KOG0391 SNF2 family DNA-depend 99.7 7.8E-15 1.7E-19 142.1 21.9 125 265-389 1260-1390(1958)
156 KOG0388 SNF2 family DNA-depend 99.7 9.1E-16 2E-20 141.8 14.3 125 265-389 1028-1157(1185)
157 COG0610 Type I site-specific r 99.7 3.8E-14 8.2E-19 143.4 24.8 285 78-373 274-636 (962)
158 smart00490 HELICc helicase sup 99.6 1.4E-15 3E-20 108.5 8.8 81 294-374 2-82 (82)
159 KOG1015 Transcription regulato 99.6 3.1E-14 6.7E-19 135.6 16.8 122 266-387 1127-1278(1567)
160 PF02399 Herpes_ori_bp: Origin 99.6 3.6E-13 7.9E-18 129.0 23.5 290 78-386 50-388 (824)
161 PF07652 Flavi_DEAD: Flaviviru 99.5 3.3E-14 7.2E-19 107.7 8.8 136 76-227 3-140 (148)
162 PF06862 DUF1253: Protein of u 99.5 3.3E-11 7.2E-16 109.9 28.7 290 105-394 34-423 (442)
163 PF00176 SNF2_N: SNF2 family N 99.5 1E-13 2.2E-18 124.9 11.8 152 66-226 1-175 (299)
164 COG0553 HepA Superfamily II DN 99.5 1.7E-12 3.8E-17 134.3 22.4 322 61-387 337-823 (866)
165 COG0653 SecA Preprotein transl 99.5 2.2E-12 4.7E-17 124.6 17.3 314 62-388 80-547 (822)
166 smart00488 DEXDc2 DEAD-like he 99.3 2.3E-11 5.1E-16 107.4 13.0 70 62-131 8-84 (289)
167 smart00489 DEXDc3 DEAD-like he 99.3 2.3E-11 5.1E-16 107.4 13.0 70 62-131 8-84 (289)
168 PRK15483 type III restriction- 99.3 2E-09 4.3E-14 106.8 24.8 143 78-225 60-240 (986)
169 PF07517 SecA_DEAD: SecA DEAD- 99.2 1E-09 2.2E-14 94.3 14.2 128 61-195 76-210 (266)
170 KOG2340 Uncharacterized conser 99.1 3.2E-09 7E-14 96.1 16.9 336 59-394 213-676 (698)
171 KOG1016 Predicted DNA helicase 99.1 1.3E-08 2.7E-13 96.3 20.1 110 280-389 720-850 (1387)
172 KOG0921 Dosage compensation co 99.1 1E-09 2.3E-14 105.0 11.1 313 64-385 380-773 (1282)
173 COG3587 Restriction endonuclea 99.0 9.6E-09 2.1E-13 98.4 14.7 71 328-398 482-565 (985)
174 KOG1133 Helicase of the DEAD s 99.0 7.3E-07 1.6E-11 83.9 26.1 104 279-385 629-779 (821)
175 KOG1001 Helicase-like transcri 98.8 1.4E-08 3E-13 98.6 9.6 102 280-381 540-643 (674)
176 PF13872 AAA_34: P-loop contai 98.8 7.3E-08 1.6E-12 83.1 12.4 157 62-226 37-223 (303)
177 PF02562 PhoH: PhoH-like prote 98.8 1E-08 2.2E-13 84.5 5.4 147 60-222 2-155 (205)
178 PF13086 AAA_11: AAA domain; P 98.8 4.8E-08 1E-12 84.6 9.8 68 63-130 2-75 (236)
179 PF13307 Helicase_C_2: Helicas 98.7 2.5E-08 5.5E-13 80.8 7.0 111 272-385 3-149 (167)
180 KOG0952 DNA/RNA helicase MER3/ 98.7 7.7E-09 1.7E-13 101.0 4.0 259 63-331 928-1207(1230)
181 PF13604 AAA_30: AAA domain; P 98.6 1.5E-07 3.3E-12 78.4 8.6 123 62-222 1-130 (196)
182 KOG1131 RNA polymerase II tran 98.6 2.2E-05 4.9E-10 71.8 22.2 74 58-131 12-90 (755)
183 TIGR00596 rad1 DNA repair prot 98.6 1.7E-06 3.6E-11 86.2 16.5 67 158-224 7-73 (814)
184 KOG1802 RNA helicase nonsense 98.5 3.5E-06 7.6E-11 79.0 14.5 76 54-131 402-477 (935)
185 PRK10536 hypothetical protein; 98.5 6E-07 1.3E-11 76.2 8.6 147 58-219 55-209 (262)
186 PF09848 DUF2075: Uncharacteri 98.4 2.5E-06 5.4E-11 78.3 10.2 108 79-209 3-117 (352)
187 PF13245 AAA_19: Part of AAA d 98.4 1.5E-06 3.2E-11 59.8 6.5 52 77-128 10-62 (76)
188 KOG1132 Helicase of the DEAD s 98.4 2.3E-06 4.9E-11 82.9 9.8 131 62-195 21-260 (945)
189 TIGR01447 recD exodeoxyribonuc 98.3 7E-06 1.5E-10 79.6 12.6 139 65-222 148-295 (586)
190 PRK10875 recD exonuclease V su 98.3 6.1E-06 1.3E-10 80.2 11.6 140 64-222 154-301 (615)
191 TIGR01448 recD_rel helicase, p 98.3 1.2E-05 2.6E-10 80.3 13.4 126 61-222 322-452 (720)
192 COG3421 Uncharacterized protei 98.3 1.3E-05 2.9E-10 74.5 12.3 141 82-225 2-167 (812)
193 PF12340 DUF3638: Protein of u 98.2 2.7E-05 5.8E-10 65.0 12.0 128 41-173 4-145 (229)
194 KOG1803 DNA helicase [Replicat 98.2 6.4E-06 1.4E-10 76.8 7.8 64 62-128 185-249 (649)
195 COG1875 NYN ribonuclease and A 98.1 1E-05 2.2E-10 71.1 8.2 145 57-220 223-385 (436)
196 PF00580 UvrD-helicase: UvrD/R 98.1 2E-05 4.4E-10 71.4 9.8 122 63-192 1-125 (315)
197 smart00491 HELICc2 helicase su 98.0 2.9E-05 6.3E-10 60.7 8.2 92 292-384 4-137 (142)
198 smart00492 HELICc3 helicase su 98.0 4.6E-05 1E-09 59.5 9.2 73 312-384 30-136 (141)
199 KOG0298 DEAD box-containing he 98.0 3.2E-05 6.9E-10 78.0 9.0 147 77-228 374-555 (1394)
200 PF13401 AAA_22: AAA domain; P 97.9 5.5E-05 1.2E-09 58.8 7.8 20 77-96 4-23 (131)
201 PRK13889 conjugal transfer rel 97.9 0.00013 2.8E-09 74.5 11.7 123 62-222 346-470 (988)
202 PRK04296 thymidine kinase; Pro 97.8 4.3E-05 9.3E-10 63.5 6.3 35 79-116 4-38 (190)
203 TIGR02768 TraA_Ti Ti-type conj 97.8 0.00044 9.6E-09 69.6 14.5 60 62-124 352-412 (744)
204 PRK12723 flagellar biosynthesi 97.8 0.001 2.2E-08 61.1 14.5 123 78-226 175-300 (388)
205 KOG0989 Replication factor C, 97.7 5.9E-05 1.3E-09 64.9 5.8 44 180-224 127-170 (346)
206 PRK13826 Dtr system oriT relax 97.7 0.00071 1.5E-08 69.8 14.1 138 46-222 366-505 (1102)
207 KOG0383 Predicted helicase [Ge 97.7 1.4E-06 3.1E-11 83.9 -5.1 74 268-342 618-696 (696)
208 cd00009 AAA The AAA+ (ATPases 97.7 0.00058 1.3E-08 54.0 10.6 38 77-117 19-56 (151)
209 COG1419 FlhF Flagellar GTP-bin 97.6 0.0012 2.7E-08 59.8 12.7 131 77-234 203-335 (407)
210 PF00448 SRP54: SRP54-type pro 97.6 0.00016 3.5E-09 60.1 6.5 131 79-233 3-135 (196)
211 PRK06526 transposase; Provisio 97.6 0.00075 1.6E-08 58.6 10.6 40 72-114 93-132 (254)
212 TIGR00376 DNA helicase, putati 97.6 0.0002 4.4E-09 70.6 7.7 67 61-130 156-223 (637)
213 smart00382 AAA ATPases associa 97.6 0.00028 6.1E-09 55.4 7.1 42 77-121 2-43 (148)
214 PRK05707 DNA polymerase III su 97.5 0.00058 1.2E-08 61.7 9.2 141 62-224 3-147 (328)
215 PRK08181 transposase; Validate 97.5 0.0021 4.5E-08 56.2 12.0 119 63-225 88-211 (269)
216 KOG1805 DNA replication helica 97.4 0.00083 1.8E-08 66.5 9.3 125 61-196 668-810 (1100)
217 PRK14722 flhF flagellar biosyn 97.4 0.0021 4.6E-08 58.6 11.3 171 37-234 78-269 (374)
218 PRK11889 flhF flagellar biosyn 97.4 0.003 6.6E-08 57.5 12.0 128 78-234 242-374 (436)
219 PF13177 DNA_pol3_delta2: DNA 97.4 0.00076 1.7E-08 54.3 7.4 127 79-228 21-147 (162)
220 PRK10919 ATP-dependent DNA hel 97.3 0.00095 2.1E-08 66.7 9.3 70 62-133 2-72 (672)
221 PF13871 Helicase_C_4: Helicas 97.3 0.0009 2E-08 58.0 7.0 57 320-376 52-116 (278)
222 PRK08769 DNA polymerase III su 97.2 0.0031 6.7E-08 56.5 10.4 143 61-224 3-154 (319)
223 PRK05703 flhF flagellar biosyn 97.2 0.007 1.5E-07 56.8 12.5 131 77-234 221-354 (424)
224 PRK14956 DNA polymerase III su 97.2 0.0019 4.1E-08 60.6 8.6 21 80-100 43-63 (484)
225 TIGR01075 uvrD DNA helicase II 97.2 0.0018 3.9E-08 65.5 9.2 71 61-133 3-74 (715)
226 PF05127 Helicase_RecD: Helica 97.2 0.0005 1.1E-08 55.5 4.2 125 81-225 1-125 (177)
227 PRK14974 cell division protein 97.1 0.014 3E-07 52.8 13.4 129 79-234 142-275 (336)
228 PHA02533 17 large terminase pr 97.1 0.0029 6.3E-08 61.0 9.6 71 62-133 59-129 (534)
229 PRK07003 DNA polymerase III su 97.1 0.0034 7.3E-08 61.8 9.8 38 182-220 119-156 (830)
230 PRK07764 DNA polymerase III su 97.1 0.0041 8.9E-08 63.0 10.8 39 181-220 119-157 (824)
231 PRK11773 uvrD DNA-dependent he 97.1 0.0023 5E-08 64.7 9.1 70 62-133 9-79 (721)
232 COG1435 Tdk Thymidine kinase [ 97.1 0.0019 4.1E-08 52.3 6.6 104 79-210 6-109 (201)
233 TIGR01074 rep ATP-dependent DN 97.1 0.0031 6.7E-08 63.5 9.7 69 63-133 2-71 (664)
234 PRK05642 DNA replication initi 97.1 0.0023 5E-08 55.0 7.5 43 183-225 98-141 (234)
235 cd01122 GP4d_helicase GP4d_hel 97.0 0.0065 1.4E-07 53.8 10.5 78 50-130 3-80 (271)
236 TIGR02760 TraI_TIGR conjugativ 97.0 0.049 1.1E-06 60.9 19.0 135 62-222 429-566 (1960)
237 PRK00149 dnaA chromosomal repl 97.0 0.0045 9.7E-08 59.0 9.8 45 78-124 149-193 (450)
238 PRK11054 helD DNA helicase IV; 97.0 0.0029 6.4E-08 62.9 8.7 72 59-132 193-265 (684)
239 COG2256 MGS1 ATPase related to 97.0 0.0031 6.8E-08 56.7 7.8 43 78-126 49-91 (436)
240 PRK13709 conjugal transfer nic 97.0 0.0065 1.4E-07 66.0 11.5 62 61-123 966-1031(1747)
241 PRK06871 DNA polymerase III su 96.9 0.0054 1.2E-07 55.1 9.0 139 63-224 3-148 (325)
242 TIGR02785 addA_Gpos recombinat 96.9 0.004 8.8E-08 66.6 9.6 122 63-193 2-126 (1232)
243 TIGR00362 DnaA chromosomal rep 96.9 0.0056 1.2E-07 57.6 9.6 38 78-116 137-174 (405)
244 cd01124 KaiC KaiC is a circadi 96.9 0.013 2.8E-07 48.6 10.7 48 80-131 2-49 (187)
245 cd01120 RecA-like_NTPases RecA 96.9 0.011 2.4E-07 47.6 10.1 38 80-120 2-39 (165)
246 PRK07993 DNA polymerase III su 96.9 0.0048 1E-07 55.9 8.5 140 63-224 3-149 (334)
247 PF03354 Terminase_1: Phage Te 96.9 0.0034 7.4E-08 60.3 8.0 147 65-220 1-160 (477)
248 PRK14712 conjugal transfer nic 96.9 0.0065 1.4E-07 65.2 10.6 62 62-124 835-900 (1623)
249 PRK14960 DNA polymerase III su 96.9 0.0056 1.2E-07 59.5 9.1 38 182-220 118-155 (702)
250 PLN03025 replication factor C 96.9 0.013 2.9E-07 53.0 11.3 40 182-223 99-138 (319)
251 PF00308 Bac_DnaA: Bacterial d 96.9 0.0049 1.1E-07 52.4 7.9 105 79-225 36-142 (219)
252 PRK14958 DNA polymerase III su 96.8 0.0064 1.4E-07 58.5 9.2 38 182-220 119-156 (509)
253 PRK14964 DNA polymerase III su 96.8 0.0077 1.7E-07 57.2 9.5 39 181-220 115-153 (491)
254 PRK06090 DNA polymerase III su 96.8 0.0067 1.4E-07 54.4 8.6 141 62-225 3-150 (319)
255 PRK08084 DNA replication initi 96.8 0.0045 9.8E-08 53.3 7.4 40 183-223 98-140 (235)
256 COG1444 Predicted P-loop ATPas 96.8 0.011 2.5E-07 58.2 10.7 158 46-224 198-357 (758)
257 PRK14087 dnaA chromosomal repl 96.8 0.0076 1.6E-07 57.1 9.4 48 78-127 142-189 (450)
258 TIGR03420 DnaA_homol_Hda DnaA 96.8 0.0092 2E-07 51.2 9.2 21 76-96 37-57 (226)
259 PRK14949 DNA polymerase III su 96.8 0.0064 1.4E-07 61.1 9.0 40 182-223 119-158 (944)
260 COG0470 HolB ATPase involved i 96.8 0.011 2.5E-07 53.7 10.1 40 181-221 108-147 (325)
261 TIGR02881 spore_V_K stage V sp 96.8 0.0074 1.6E-07 53.0 8.5 18 78-95 43-60 (261)
262 PRK06893 DNA replication initi 96.8 0.0052 1.1E-07 52.7 7.3 44 182-225 91-136 (229)
263 PRK06964 DNA polymerase III su 96.8 0.0056 1.2E-07 55.4 7.7 150 63-224 2-173 (342)
264 PRK12323 DNA polymerase III su 96.8 0.0081 1.8E-07 58.3 9.1 42 181-223 123-164 (700)
265 PRK08727 hypothetical protein; 96.7 0.0089 1.9E-07 51.4 8.6 43 183-225 94-138 (233)
266 PRK12402 replication factor C 96.7 0.016 3.5E-07 53.0 10.9 38 182-220 125-162 (337)
267 PF05970 PIF1: PIF1-like helic 96.7 0.0025 5.4E-08 58.8 5.3 56 63-121 2-63 (364)
268 PHA02544 44 clamp loader, smal 96.7 0.017 3.8E-07 52.3 10.8 38 183-220 101-138 (316)
269 COG2909 MalT ATP-dependent tra 96.7 0.0072 1.6E-07 59.6 8.3 135 77-224 37-171 (894)
270 PRK06921 hypothetical protein; 96.7 0.016 3.4E-07 50.9 9.8 38 77-116 117-154 (266)
271 KOG1513 Nuclear helicase MOP-3 96.7 0.0023 5E-08 62.1 4.8 157 62-223 264-454 (1300)
272 PF13173 AAA_14: AAA domain 96.7 0.032 7E-07 42.9 10.5 38 183-224 62-99 (128)
273 PRK00411 cdc6 cell division co 96.7 0.015 3.2E-07 54.6 10.2 36 78-114 56-91 (394)
274 COG1484 DnaC DNA replication p 96.7 0.01 2.2E-07 51.6 8.4 48 76-127 104-151 (254)
275 PRK12377 putative replication 96.6 0.014 3E-07 50.4 8.9 43 78-124 102-144 (248)
276 PRK14952 DNA polymerase III su 96.6 0.0096 2.1E-07 58.0 8.7 39 181-220 117-155 (584)
277 PRK07952 DNA replication prote 96.6 0.028 6.1E-07 48.4 10.7 34 78-114 100-133 (244)
278 TIGR01547 phage_term_2 phage t 96.6 0.0092 2E-07 56.0 8.4 136 80-226 4-143 (396)
279 COG2805 PilT Tfp pilus assembl 96.6 0.0048 1E-07 53.4 5.7 58 37-114 103-160 (353)
280 TIGR01073 pcrA ATP-dependent D 96.6 0.01 2.2E-07 60.3 9.1 71 61-133 3-74 (726)
281 PRK07994 DNA polymerase III su 96.6 0.012 2.7E-07 57.7 9.2 37 182-219 119-155 (647)
282 PRK14951 DNA polymerase III su 96.6 0.01 2.2E-07 58.0 8.6 39 181-220 123-161 (618)
283 PRK07471 DNA polymerase III su 96.6 0.014 3.1E-07 53.6 9.1 132 80-224 44-182 (365)
284 PRK14965 DNA polymerase III su 96.6 0.02 4.3E-07 56.2 10.5 39 181-220 118-156 (576)
285 KOG0738 AAA+-type ATPase [Post 96.5 0.089 1.9E-06 47.4 13.3 83 36-125 179-286 (491)
286 KOG0739 AAA+-type ATPase [Post 96.5 0.036 7.7E-07 48.0 10.5 131 72-248 156-303 (439)
287 PRK14961 DNA polymerase III su 96.5 0.012 2.6E-07 54.3 8.5 38 182-220 119-156 (363)
288 COG4626 Phage terminase-like p 96.5 0.019 4.1E-07 54.2 9.6 149 62-222 61-224 (546)
289 PF00004 AAA: ATPase family as 96.5 0.059 1.3E-06 41.5 11.3 15 80-94 1-15 (132)
290 PRK08903 DnaA regulatory inact 96.5 0.019 4E-07 49.3 9.0 41 183-224 91-132 (227)
291 PF14617 CMS1: U3-containing 9 96.5 0.011 2.3E-07 50.8 7.1 86 107-193 125-212 (252)
292 PRK09112 DNA polymerase III su 96.5 0.032 6.8E-07 51.0 10.6 42 181-223 140-181 (351)
293 CHL00181 cbbX CbbX; Provisiona 96.5 0.02 4.4E-07 50.8 9.1 21 77-97 59-79 (287)
294 PRK14959 DNA polymerase III su 96.4 0.015 3.3E-07 56.6 8.8 24 79-102 40-63 (624)
295 PRK14088 dnaA chromosomal repl 96.4 0.032 7E-07 52.9 10.9 38 78-116 131-168 (440)
296 PRK09111 DNA polymerase III su 96.4 0.015 3.3E-07 56.9 8.9 39 181-220 131-169 (598)
297 PF05621 TniB: Bacterial TniB 96.4 0.024 5.1E-07 49.8 9.0 40 183-223 146-189 (302)
298 PRK12727 flagellar biosynthesi 96.4 0.064 1.4E-06 51.1 12.4 121 76-225 349-471 (559)
299 PRK08691 DNA polymerase III su 96.4 0.018 3.9E-07 56.6 9.1 38 182-220 119-156 (709)
300 PRK05896 DNA polymerase III su 96.4 0.021 4.5E-07 55.4 9.2 38 182-220 119-156 (605)
301 PRK08116 hypothetical protein; 96.4 0.048 1E-06 47.9 10.9 40 79-122 116-155 (268)
302 PRK00440 rfc replication facto 96.4 0.052 1.1E-06 49.3 11.6 37 183-220 103-139 (319)
303 PHA03333 putative ATPase subun 96.4 0.066 1.4E-06 52.2 12.4 145 63-224 170-333 (752)
304 PRK06731 flhF flagellar biosyn 96.4 0.096 2.1E-06 45.9 12.5 128 78-234 76-208 (270)
305 PRK09183 transposase/IS protei 96.3 0.043 9.3E-07 48.0 10.3 45 74-122 99-143 (259)
306 TIGR02880 cbbX_cfxQ probable R 96.3 0.029 6.3E-07 49.8 9.4 19 77-95 58-76 (284)
307 PRK08533 flagellar accessory p 96.3 0.054 1.2E-06 46.5 10.7 53 75-131 22-74 (230)
308 PRK14957 DNA polymerase III su 96.3 0.03 6.6E-07 54.0 10.0 38 182-220 119-156 (546)
309 PTZ00112 origin recognition co 96.3 0.059 1.3E-06 54.2 11.8 18 80-97 784-801 (1164)
310 KOG0991 Replication factor C, 96.3 0.0084 1.8E-07 49.8 5.2 37 181-218 112-148 (333)
311 PTZ00293 thymidine kinase; Pro 96.3 0.029 6.2E-07 46.8 8.4 40 77-119 4-43 (211)
312 PRK14721 flhF flagellar biosyn 96.3 0.078 1.7E-06 49.4 12.0 131 77-234 191-323 (420)
313 PRK12724 flagellar biosynthesi 96.2 0.096 2.1E-06 48.5 12.2 125 79-233 225-355 (432)
314 COG1222 RPT1 ATP-dependent 26S 96.2 0.048 1E-06 48.6 9.8 74 39-122 147-223 (406)
315 PRK14969 DNA polymerase III su 96.2 0.027 5.8E-07 54.6 9.1 39 181-220 118-156 (527)
316 PRK14086 dnaA chromosomal repl 96.2 0.035 7.5E-07 54.0 9.8 102 79-223 316-419 (617)
317 TIGR02760 TraI_TIGR conjugativ 96.2 0.029 6.3E-07 62.6 10.4 62 61-124 1018-1084(1960)
318 PRK07940 DNA polymerase III su 96.2 0.027 5.9E-07 52.3 8.7 42 181-223 116-157 (394)
319 PRK00771 signal recognition pa 96.2 0.066 1.4E-06 50.3 11.3 129 79-233 97-227 (437)
320 PRK14955 DNA polymerase III su 96.2 0.043 9.3E-07 51.4 10.1 23 80-102 41-63 (397)
321 PHA03368 DNA packaging termina 96.2 0.051 1.1E-06 52.8 10.3 133 78-224 255-391 (738)
322 PRK06995 flhF flagellar biosyn 96.1 0.049 1.1E-06 51.7 10.2 22 77-98 256-277 (484)
323 PF05496 RuvB_N: Holliday junc 96.1 0.019 4.2E-07 48.0 6.7 17 78-94 51-67 (233)
324 PRK14962 DNA polymerase III su 96.1 0.024 5.3E-07 53.9 8.3 19 80-98 39-57 (472)
325 PRK14723 flhF flagellar biosyn 96.1 0.12 2.7E-06 51.7 13.3 130 78-234 186-317 (767)
326 PRK05563 DNA polymerase III su 96.1 0.032 7E-07 54.5 9.3 22 80-101 41-62 (559)
327 PRK14963 DNA polymerase III su 96.1 0.027 5.8E-07 54.1 8.3 20 80-99 39-58 (504)
328 PRK12726 flagellar biosynthesi 96.1 0.077 1.7E-06 48.4 10.6 119 77-224 206-328 (407)
329 TIGR00678 holB DNA polymerase 96.0 0.059 1.3E-06 44.7 9.4 39 181-220 95-133 (188)
330 PRK06645 DNA polymerase III su 96.0 0.03 6.5E-07 53.7 8.3 21 79-99 45-65 (507)
331 PRK04195 replication factor C 96.0 0.038 8.3E-07 53.2 9.0 19 77-95 39-57 (482)
332 PRK12422 chromosomal replicati 96.0 0.034 7.4E-07 52.6 8.4 41 78-122 142-182 (445)
333 PRK08699 DNA polymerase III su 96.0 0.039 8.4E-07 49.9 8.4 146 63-223 2-153 (325)
334 TIGR01425 SRP54_euk signal rec 95.9 0.17 3.6E-06 47.4 12.5 58 79-140 102-159 (429)
335 COG3972 Superfamily I DNA and 95.9 0.038 8.1E-07 51.2 7.9 70 61-132 161-230 (660)
336 TIGR02397 dnaX_nterm DNA polym 95.9 0.038 8.2E-07 51.1 8.3 18 79-96 38-55 (355)
337 PRK14954 DNA polymerase III su 95.9 0.032 7E-07 54.8 8.0 121 80-220 41-164 (620)
338 cd00984 DnaB_C DnaB helicase C 95.9 0.071 1.5E-06 46.2 9.5 40 75-116 11-50 (242)
339 PRK08451 DNA polymerase III su 95.9 0.038 8.3E-07 53.1 8.3 39 181-220 116-154 (535)
340 PRK13833 conjugal transfer pro 95.8 0.018 3.9E-07 51.7 5.5 57 63-120 129-186 (323)
341 PRK05973 replicative DNA helic 95.8 0.026 5.5E-07 48.3 6.1 84 43-131 21-114 (237)
342 PRK13894 conjugal transfer ATP 95.8 0.017 3.7E-07 51.9 5.4 65 53-120 125-190 (319)
343 TIGR02525 plasmid_TraJ plasmid 95.8 0.024 5.1E-07 52.1 6.2 43 76-119 148-190 (372)
344 KOG2028 ATPase related to the 95.7 0.041 8.9E-07 49.1 7.3 49 79-130 164-212 (554)
345 PF05876 Terminase_GpA: Phage 95.7 0.035 7.7E-07 54.1 7.7 70 62-133 16-88 (557)
346 PRK10917 ATP-dependent DNA hel 95.7 0.069 1.5E-06 53.8 9.7 78 278-355 309-391 (681)
347 COG1702 PhoH Phosphate starvat 95.6 0.037 8E-07 49.1 6.6 56 60-116 126-181 (348)
348 TIGR02782 TrbB_P P-type conjug 95.6 0.029 6.3E-07 50.1 6.1 57 63-120 117-174 (299)
349 TIGR02928 orc1/cdc6 family rep 95.6 0.057 1.2E-06 50.1 8.4 24 78-102 41-64 (365)
350 PRK05580 primosome assembly pr 95.6 0.15 3.2E-06 51.3 11.7 77 279-356 190-267 (679)
351 PRK11331 5-methylcytosine-spec 95.6 0.055 1.2E-06 50.5 8.0 33 63-95 180-212 (459)
352 PRK11823 DNA repair protein Ra 95.6 0.074 1.6E-06 50.5 9.1 51 77-131 80-130 (446)
353 PHA00729 NTP-binding motif con 95.6 0.11 2.4E-06 43.8 9.1 17 79-95 19-35 (226)
354 PF05729 NACHT: NACHT domain 95.6 0.091 2E-06 42.3 8.6 20 79-98 2-21 (166)
355 PRK13341 recombination factor 95.6 0.076 1.6E-06 53.4 9.4 18 78-95 53-70 (725)
356 TIGR03600 phage_DnaB phage rep 95.6 0.095 2.1E-06 49.6 9.8 131 60-195 177-318 (421)
357 COG2804 PulE Type II secretory 95.6 0.018 3.9E-07 53.9 4.6 41 64-105 243-285 (500)
358 COG4962 CpaF Flp pilus assembl 95.6 0.024 5.2E-07 50.3 5.2 70 48-121 143-213 (355)
359 COG0593 DnaA ATPase involved i 95.6 0.076 1.7E-06 49.0 8.6 44 182-225 175-220 (408)
360 PRK06647 DNA polymerase III su 95.5 0.064 1.4E-06 52.3 8.5 37 181-218 118-154 (563)
361 PRK08939 primosomal protein Dn 95.5 0.14 3E-06 45.9 10.1 26 77-103 156-181 (306)
362 PRK06904 replicative DNA helic 95.5 0.17 3.7E-06 48.4 11.1 117 74-195 218-347 (472)
363 PRK14948 DNA polymerase III su 95.5 0.067 1.5E-06 52.8 8.7 25 78-102 39-63 (620)
364 PRK13342 recombination factor 95.5 0.061 1.3E-06 50.7 8.2 18 78-95 37-54 (413)
365 cd00561 CobA_CobO_BtuR ATP:cor 95.5 0.18 3.8E-06 40.2 9.5 50 181-230 94-145 (159)
366 PF03796 DnaB_C: DnaB-like hel 95.4 0.076 1.6E-06 46.6 8.1 145 75-224 17-181 (259)
367 COG1474 CDC6 Cdc6-related prot 95.4 0.29 6.2E-06 45.1 11.9 27 78-105 43-69 (366)
368 PRK07399 DNA polymerase III su 95.4 0.11 2.4E-06 46.8 9.0 61 160-223 103-163 (314)
369 PRK08058 DNA polymerase III su 95.4 0.11 2.4E-06 47.3 9.1 42 181-223 109-150 (329)
370 TIGR03499 FlhF flagellar biosy 95.4 0.043 9.4E-07 48.7 6.3 22 78-99 195-216 (282)
371 PRK06067 flagellar accessory p 95.4 0.29 6.3E-06 42.1 11.4 51 77-131 25-75 (234)
372 PRK14950 DNA polymerase III su 95.4 0.1 2.2E-06 51.6 9.4 37 181-218 119-155 (585)
373 PRK05986 cob(I)alamin adenolsy 95.4 0.084 1.8E-06 43.2 7.4 141 76-229 21-164 (191)
374 PRK04841 transcriptional regul 95.3 0.15 3.3E-06 53.5 11.4 42 183-224 122-163 (903)
375 COG1110 Reverse gyrase [DNA re 95.3 0.058 1.3E-06 54.5 7.3 73 266-338 112-190 (1187)
376 PRK06620 hypothetical protein; 95.3 0.047 1E-06 46.2 5.9 17 78-94 45-61 (214)
377 PRK10867 signal recognition pa 95.2 0.23 4.9E-06 46.7 10.8 20 80-99 103-122 (433)
378 TIGR03015 pepcterm_ATPase puta 95.2 0.16 3.5E-06 44.8 9.5 33 63-95 24-61 (269)
379 cd01121 Sms Sms (bacterial rad 95.2 0.086 1.9E-06 48.6 7.7 51 77-131 82-132 (372)
380 TIGR00595 priA primosomal prot 95.2 0.16 3.4E-06 49.1 9.9 77 278-355 24-101 (505)
381 COG3973 Superfamily I DNA and 95.2 0.059 1.3E-06 51.3 6.6 84 48-132 191-284 (747)
382 TIGR02524 dot_icm_DotB Dot/Icm 95.1 0.053 1.1E-06 49.7 6.2 27 76-103 133-159 (358)
383 TIGR00064 ftsY signal recognit 95.1 0.29 6.2E-06 43.1 10.6 130 78-233 73-212 (272)
384 TIGR02237 recomb_radB DNA repa 95.1 0.19 4.2E-06 42.4 9.3 38 77-117 12-49 (209)
385 PRK08840 replicative DNA helic 95.1 0.26 5.6E-06 47.0 10.9 131 60-195 200-342 (464)
386 TIGR03689 pup_AAA proteasome A 95.1 0.16 3.4E-06 48.8 9.4 18 77-94 216-233 (512)
387 TIGR03877 thermo_KaiC_1 KaiC d 95.1 0.043 9.4E-07 47.4 5.3 53 76-132 20-72 (237)
388 PF01443 Viral_helicase1: Vira 95.1 0.03 6.5E-07 48.2 4.3 15 80-94 1-15 (234)
389 TIGR00643 recG ATP-dependent D 95.0 0.12 2.6E-06 51.7 9.0 79 278-356 283-366 (630)
390 PRK08506 replicative DNA helic 95.0 0.35 7.6E-06 46.4 11.7 116 74-195 189-315 (472)
391 PRK07133 DNA polymerase III su 94.9 0.075 1.6E-06 52.8 7.0 39 181-220 117-155 (725)
392 PRK05917 DNA polymerase III su 94.9 0.43 9.4E-06 42.1 11.0 44 181-225 94-137 (290)
393 PRK07004 replicative DNA helic 94.9 0.18 3.9E-06 48.1 9.4 118 73-195 209-337 (460)
394 PRK08006 replicative DNA helic 94.9 0.44 9.6E-06 45.6 11.9 147 72-223 219-386 (471)
395 PRK13851 type IV secretion sys 94.9 0.042 9.1E-07 49.9 4.9 43 74-120 159-201 (344)
396 PF03237 Terminase_6: Terminas 94.9 0.52 1.1E-05 43.7 12.6 144 81-238 1-154 (384)
397 PF01695 IstB_IS21: IstB-like 94.9 0.04 8.6E-07 45.1 4.3 46 74-123 44-89 (178)
398 PHA00012 I assembly protein 94.8 0.7 1.5E-05 41.2 11.8 26 80-105 4-29 (361)
399 TIGR00665 DnaB replicative DNA 94.8 0.25 5.4E-06 47.0 10.2 143 74-223 192-355 (434)
400 TIGR02784 addA_alphas double-s 94.8 0.081 1.7E-06 56.8 7.4 99 77-175 10-124 (1141)
401 TIGR01420 pilT_fam pilus retra 94.8 0.082 1.8E-06 48.4 6.5 42 77-120 122-163 (343)
402 TIGR00959 ffh signal recogniti 94.7 0.61 1.3E-05 43.9 12.2 21 80-100 102-122 (428)
403 PF06745 KaiC: KaiC; InterPro 94.7 0.051 1.1E-06 46.6 4.8 53 76-131 18-70 (226)
404 TIGR00708 cobA cob(I)alamin ad 94.7 0.17 3.6E-06 40.9 7.4 49 181-229 96-146 (173)
405 cd03115 SRP The signal recogni 94.6 1.2 2.6E-05 36.1 12.6 20 80-99 3-22 (173)
406 PRK05748 replicative DNA helic 94.6 0.31 6.7E-06 46.6 10.3 145 74-223 200-365 (448)
407 PF03969 AFG1_ATPase: AFG1-lik 94.6 0.65 1.4E-05 42.7 11.9 43 183-226 128-171 (362)
408 TIGR00767 rho transcription te 94.6 0.12 2.5E-06 47.6 7.0 31 74-105 165-195 (415)
409 COG1198 PriA Primosomal protei 94.6 0.19 4.1E-06 50.1 8.9 97 256-353 220-319 (730)
410 PF06733 DEAD_2: DEAD_2; Inte 94.6 0.023 5E-07 46.4 2.2 42 154-196 115-159 (174)
411 PRK14873 primosome assembly pr 94.5 0.23 5E-06 49.4 9.3 91 264-355 171-265 (665)
412 PHA03372 DNA packaging termina 94.5 0.55 1.2E-05 45.4 11.2 126 78-224 203-338 (668)
413 PRK14971 DNA polymerase III su 94.5 0.17 3.6E-06 50.1 8.3 39 181-220 120-158 (614)
414 PRK06305 DNA polymerase III su 94.4 0.37 8E-06 45.9 10.2 39 181-220 120-158 (451)
415 KOG0058 Peptide exporter, ABC 94.4 0.064 1.4E-06 52.3 5.0 41 181-222 621-661 (716)
416 PF02572 CobA_CobO_BtuR: ATP:c 94.3 0.79 1.7E-05 37.0 10.4 138 80-229 6-145 (172)
417 KOG1807 Helicases [Replication 94.3 0.06 1.3E-06 52.6 4.6 68 62-129 378-448 (1025)
418 PRK10436 hypothetical protein; 94.3 0.089 1.9E-06 49.9 5.8 38 65-103 204-243 (462)
419 PRK14953 DNA polymerase III su 94.3 0.36 7.7E-06 46.4 9.9 36 181-217 118-153 (486)
420 PRK13900 type IV secretion sys 94.3 0.055 1.2E-06 49.1 4.2 42 75-120 158-199 (332)
421 COG1197 Mfd Transcription-repa 94.3 0.22 4.9E-06 51.5 8.8 76 278-353 642-722 (1139)
422 PRK09376 rho transcription ter 94.3 0.16 3.6E-06 46.5 7.1 54 75-130 167-220 (416)
423 TIGR00580 mfd transcription-re 94.2 0.26 5.7E-06 51.1 9.3 78 278-355 499-581 (926)
424 PHA00350 putative assembly pro 94.2 0.37 8.1E-06 44.5 9.3 25 80-104 4-29 (399)
425 PRK09165 replicative DNA helic 94.2 0.38 8.2E-06 46.5 9.8 116 76-195 216-354 (497)
426 KOG0732 AAA+-type ATPase conta 94.1 0.13 2.9E-06 52.6 6.8 55 39-94 261-316 (1080)
427 COG1200 RecG RecG-like helicas 94.1 0.32 7E-06 47.4 8.9 90 267-356 298-393 (677)
428 PRK11034 clpA ATP-dependent Cl 94.0 0.6 1.3E-05 47.4 11.1 19 77-95 207-225 (758)
429 cd01130 VirB11-like_ATPase Typ 94.0 0.13 2.9E-06 42.4 5.6 39 63-102 10-49 (186)
430 CHL00176 ftsH cell division pr 93.9 0.35 7.6E-06 48.0 9.2 17 78-94 217-233 (638)
431 COG0467 RAD55 RecA-superfamily 93.9 0.12 2.5E-06 45.5 5.3 53 76-132 22-74 (260)
432 TIGR02538 type_IV_pilB type IV 93.9 0.11 2.3E-06 51.1 5.6 38 65-103 302-341 (564)
433 cd01128 rho_factor Transcripti 93.8 0.19 4.1E-06 43.5 6.4 31 73-104 12-42 (249)
434 PRK08760 replicative DNA helic 93.8 0.48 1E-05 45.4 9.7 116 75-195 227-352 (476)
435 TIGR02688 conserved hypothetic 93.8 0.34 7.3E-06 45.0 8.1 55 42-96 167-228 (449)
436 TIGR01243 CDC48 AAA family ATP 93.7 0.32 6.8E-06 49.7 8.9 19 76-94 211-229 (733)
437 PRK10416 signal recognition pa 93.7 2 4.3E-05 38.8 13.0 54 181-234 195-255 (318)
438 PRK06321 replicative DNA helic 93.7 0.82 1.8E-05 43.7 11.0 115 75-195 224-349 (472)
439 KOG0737 AAA+-type ATPase [Post 93.7 0.29 6.4E-06 43.9 7.4 57 36-95 85-145 (386)
440 PRK04328 hypothetical protein; 93.7 0.13 2.8E-06 44.7 5.3 53 76-132 22-74 (249)
441 PF00437 T2SE: Type II/IV secr 93.7 0.078 1.7E-06 46.9 3.9 43 75-120 125-167 (270)
442 PRK06835 DNA replication prote 93.7 0.13 2.8E-06 46.5 5.3 43 77-123 183-225 (329)
443 TIGR00635 ruvB Holliday juncti 93.7 0.13 2.8E-06 46.4 5.4 17 78-94 31-47 (305)
444 cd01129 PulE-GspE PulE/GspE Th 93.7 0.15 3.3E-06 44.7 5.6 53 64-119 65-119 (264)
445 COG1132 MdlB ABC-type multidru 93.5 0.16 3.4E-06 50.3 6.1 31 183-213 484-514 (567)
446 KOG0742 AAA+-type ATPase [Post 93.5 0.23 5E-06 45.2 6.4 139 38-227 350-497 (630)
447 PF03266 NTPase_1: NTPase; In 93.5 0.071 1.5E-06 43.1 3.0 27 182-208 95-123 (168)
448 cd01131 PilT Pilus retraction 93.5 0.11 2.4E-06 43.4 4.3 38 80-119 4-41 (198)
449 TIGR02639 ClpA ATP-dependent C 93.4 0.5 1.1E-05 48.2 9.7 18 78-95 204-221 (731)
450 TIGR03878 thermo_KaiC_2 KaiC d 93.4 0.22 4.7E-06 43.6 6.2 38 76-116 35-72 (259)
451 cd01393 recA_like RecA is a b 93.4 0.28 6.2E-06 41.9 6.9 42 77-118 19-63 (226)
452 PRK10689 transcription-repair 93.4 0.46 1E-05 50.6 9.5 77 278-354 648-729 (1147)
453 PRK05636 replicative DNA helic 93.4 0.52 1.1E-05 45.5 9.1 113 77-195 265-388 (505)
454 COG1219 ClpX ATP-dependent pro 93.4 0.065 1.4E-06 47.0 2.7 55 40-94 44-114 (408)
455 PF12846 AAA_10: AAA-like doma 93.3 0.1 2.2E-06 46.8 4.2 40 77-119 1-40 (304)
456 COG2812 DnaX DNA polymerase II 93.3 0.14 3E-06 48.9 5.0 40 180-220 117-156 (515)
457 TIGR00416 sms DNA repair prote 93.3 0.88 1.9E-05 43.4 10.4 51 77-131 94-144 (454)
458 KOG0298 DEAD box-containing he 93.3 0.16 3.4E-06 52.7 5.6 94 278-376 1220-1314(1394)
459 KOG0733 Nuclear AAA ATPase (VC 93.2 1.3 2.9E-05 42.7 11.1 79 183-276 605-694 (802)
460 TIGR01243 CDC48 AAA family ATP 93.2 0.33 7.2E-06 49.5 8.0 18 77-94 487-504 (733)
461 PRK14970 DNA polymerase III su 93.1 0.54 1.2E-05 43.6 8.7 18 79-96 41-58 (367)
462 PRK05818 DNA polymerase III su 93.1 0.43 9.3E-06 41.3 7.3 44 181-225 87-130 (261)
463 TIGR02533 type_II_gspE general 93.1 0.17 3.6E-06 48.6 5.3 39 64-103 227-267 (486)
464 COG1074 RecB ATP-dependent exo 93.0 0.16 3.4E-06 54.3 5.6 56 76-131 15-72 (1139)
465 TIGR02868 CydC thiol reductant 93.0 0.28 6E-06 48.1 7.0 37 183-219 489-525 (529)
466 TIGR03881 KaiC_arch_4 KaiC dom 93.0 0.22 4.7E-06 42.8 5.6 52 76-131 19-70 (229)
467 KOG0740 AAA+-type ATPase [Post 92.9 0.71 1.5E-05 42.9 8.9 78 183-277 246-336 (428)
468 COG5008 PilU Tfp pilus assembl 92.9 0.21 4.5E-06 42.8 4.9 42 77-120 127-168 (375)
469 TIGR01241 FtsH_fam ATP-depende 92.9 0.53 1.2E-05 45.6 8.5 18 77-94 88-105 (495)
470 TIGR03345 VI_ClpV1 type VI sec 92.9 0.49 1.1E-05 48.9 8.6 16 80-95 599-614 (852)
471 TIGR03880 KaiC_arch_3 KaiC dom 92.8 0.25 5.5E-06 42.2 5.7 52 76-131 15-66 (224)
472 KOG0741 AAA+-type ATPase [Post 92.8 1.5 3.2E-05 41.7 10.6 89 22-118 474-574 (744)
473 cd00544 CobU Adenosylcobinamid 92.8 0.84 1.8E-05 37.0 8.3 45 80-130 2-46 (169)
474 PRK13764 ATPase; Provisional 92.8 0.21 4.5E-06 48.9 5.5 27 76-103 256-282 (602)
475 KOG0701 dsRNA-specific nucleas 92.7 0.076 1.7E-06 56.9 2.7 93 281-373 294-398 (1606)
476 PRK09087 hypothetical protein; 92.7 0.4 8.7E-06 41.0 6.7 38 184-223 89-126 (226)
477 COG0210 UvrD Superfamily I DNA 92.7 0.28 6.1E-06 49.5 6.6 70 62-133 2-72 (655)
478 PF01637 Arch_ATPase: Archaeal 92.7 0.18 3.8E-06 43.2 4.6 55 165-223 105-165 (234)
479 KOG2228 Origin recognition com 92.7 1.8 4E-05 38.6 10.5 56 168-223 123-181 (408)
480 PF08423 Rad51: Rad51; InterP 92.6 0.25 5.3E-06 43.2 5.4 41 80-120 41-84 (256)
481 cd01123 Rad51_DMC1_radA Rad51_ 92.6 0.43 9.3E-06 41.1 6.9 42 76-117 18-62 (235)
482 PRK05595 replicative DNA helic 92.6 0.35 7.7E-06 46.1 6.8 116 74-195 198-324 (444)
483 KOG1513 Nuclear helicase MOP-3 92.5 0.16 3.5E-06 50.0 4.3 54 322-375 850-911 (1300)
484 PF13481 AAA_25: AAA domain; P 92.4 0.35 7.6E-06 40.1 5.9 57 76-133 31-94 (193)
485 PF02456 Adeno_IVa2: Adenoviru 92.3 0.18 3.9E-06 44.1 3.9 40 80-120 90-129 (369)
486 PRK05564 DNA polymerase III su 92.2 1.5 3.2E-05 39.7 10.1 39 181-220 92-130 (313)
487 KOG0734 AAA+-type ATPase conta 92.2 0.46 9.9E-06 44.9 6.6 46 183-228 397-452 (752)
488 PRK04132 replication factor C 92.2 0.85 1.8E-05 46.6 9.1 38 183-221 631-668 (846)
489 KOG0730 AAA+-type ATPase [Post 92.2 1.2 2.5E-05 43.4 9.4 54 38-94 429-485 (693)
490 cd01125 repA Hexameric Replica 92.1 1.4 2.9E-05 38.1 9.4 54 79-133 3-65 (239)
491 PRK12608 transcription termina 92.1 1.4 2.9E-05 40.5 9.4 38 66-104 119-159 (380)
492 TIGR02640 gas_vesic_GvpN gas v 92.0 0.18 4E-06 44.2 3.9 27 69-95 13-39 (262)
493 TIGR03346 chaperone_ClpB ATP-d 92.0 1 2.2E-05 46.8 9.8 18 78-95 195-212 (852)
494 KOG1132 Helicase of the DEAD s 92.0 4.8 0.0001 40.7 13.5 105 280-385 562-721 (945)
495 PF04665 Pox_A32: Poxvirus A32 92.0 0.24 5.1E-06 42.4 4.3 35 79-116 15-49 (241)
496 COG0542 clpA ATP-binding subun 91.9 1.7 3.7E-05 43.8 10.7 39 79-121 523-561 (786)
497 PF01935 DUF87: Domain of unkn 91.8 0.23 5.1E-06 42.6 4.2 41 77-119 23-63 (229)
498 TIGR02788 VirB11 P-type DNA tr 91.8 0.21 4.6E-06 45.0 4.1 28 74-102 141-168 (308)
499 PF01580 FtsK_SpoIIIE: FtsK/Sp 91.8 0.27 6E-06 41.3 4.6 45 74-118 35-79 (205)
500 cd01126 TraG_VirD4 The TraG/Tr 91.8 0.19 4.1E-06 47.0 3.9 47 79-130 1-47 (384)
No 1
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-65 Score=414.98 Aligned_cols=377 Identities=68% Similarity=1.064 Sum_probs=362.9
Q ss_pred ccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 37 EVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
.+...|+.+++.+++.+.+.+.||..|..+|.+|++++++|++++.++..|+|||.++.+.++..+.-......++++.|
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsP 103 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSP 103 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecC
Confidence 45789999999999999999999999999999999999999999999999999999887777776655554568999999
Q ss_pred cHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc
Q 015093 117 TRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS 196 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 196 (413)
|++|+.|..+.+..++..+++.+..+.||.+...+.+.+..+.+++.+||+..++++++..+....++++|+|||+.+++
T Consensus 104 TRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~ 183 (400)
T KOG0328|consen 104 TRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLN 183 (400)
T ss_pred hHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHH
Confidence 99999999999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHh
Q 015093 197 RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET 276 (413)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (413)
.++..++..+++.+|++.|++++|||++.+..+....++.+|+.+...+.+.+.+++++++..++..+|+.+.|..+...
T Consensus 184 kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~ 263 (400)
T KOG0328|consen 184 KGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDT 263 (400)
T ss_pred hhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC
Q 015093 277 LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 277 ~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 356 (413)
..-..++|||+++..+.++.+.+.+.++.+...||+|.+++|+++..+|++|+.+|||+|++-++|+|+|.++.||+++.
T Consensus 264 LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDL 343 (400)
T KOG0328|consen 264 LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDL 343 (400)
T ss_pred hehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCC
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhccC
Q 015093 357 PTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413 (413)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (413)
|.+...|+||+||.||.|+.|.++-|+...|...+.+++++|...+++||+++.+++
T Consensus 344 P~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~i 400 (400)
T KOG0328|consen 344 PNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADLI 400 (400)
T ss_pred CccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhcC
Confidence 999999999999999999999999999999999999999999999999999998875
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-63 Score=421.18 Aligned_cols=371 Identities=35% Similarity=0.549 Sum_probs=353.0
Q ss_pred ccccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEE
Q 015093 33 VSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQAL 112 (413)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~l 112 (413)
....+...+|.++++++.+.+++...++..|+++|.++++.++.|+++|..+.||||||.+|++||++.+......+.++
T Consensus 54 ~~~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~l 133 (476)
T KOG0330|consen 54 MQTDESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFAL 133 (476)
T ss_pred hhhhhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEE
Confidence 34466679999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred EEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHH-cCCCCCCCccEEEEccc
Q 015093 113 VLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLR-RQSLRPDYIRMFVLDEA 191 (413)
Q Consensus 113 vl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~-~~~~~~~~~~~iIiDE~ 191 (413)
|++||++|+.|..+.+..++...++.+..+.||.+...+...+...++|+|+||+.|.+++. .+.+.+..++++|+|||
T Consensus 134 VLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEA 213 (476)
T KOG0330|consen 134 VLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEA 213 (476)
T ss_pred EecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchH
Confidence 99999999999999999999999999999999999888888888899999999999999998 57888999999999999
Q ss_pred hhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHH
Q 015093 192 DEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLC 271 (413)
Q Consensus 192 h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 271 (413)
|++++.+|...+..+++.+|...+.+++|||++.....+.......|..+......-..+.+.+.+..++. .++...|.
T Consensus 214 DrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~-k~K~~yLV 292 (476)
T KOG0330|consen 214 DRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG-KDKDTYLV 292 (476)
T ss_pred HhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc-cccchhHH
Confidence 99999999999999999999999999999999999999999999999999988888888888888888876 57888899
Q ss_pred HHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEE
Q 015093 272 DLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV 351 (413)
Q Consensus 272 ~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~v 351 (413)
.+++...++.++|||++...+..++-.|...|+.+..+||.|++..|.-.++.|++|..+||+||+++++|+|+|.+++|
T Consensus 293 ~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~V 372 (476)
T KOG0330|consen 293 YLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVV 372 (476)
T ss_pred HHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEE
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhcccccc
Q 015093 352 INYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEE 404 (413)
Q Consensus 352 i~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (413)
|+||.|.+..+|+||+||++|+|.+|.++.+++.-|.+.+..++..+.+....
T Consensus 373 VNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 373 VNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred EecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999987755
No 3
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.3e-62 Score=439.74 Aligned_cols=372 Identities=37% Similarity=0.612 Sum_probs=344.7
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc------ccCceeEEE
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY------ESLQCQALV 113 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~------~~~~~~~lv 113 (413)
..|+.++++++....++..||..|+|+|..+++.++.|+|++..+.||||||++|++|++.++.. ...++.+||
T Consensus 91 ~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 37899999999999999999999999999999999999999999999999999999999998875 344678999
Q ss_pred EcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchh
Q 015093 114 LAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE 193 (413)
Q Consensus 114 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~ 193 (413)
++||++|+.|...++..++....++..+++||..+..+...+..+.+|+|+||+.|.++++.....++.+.++|+||||+
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADR 250 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCcHHHHHHHHhhCC-CCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCc--cccCCceEEEEEeCccccHHHHH
Q 015093 194 MLSRGFKDQIYDIFQHLP-GKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDE--LTLEGIKQFHVNVDKEEWKLDTL 270 (413)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~-~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l 270 (413)
|++.+|...+.+++..++ ...|.++.|||++.+...+...++.++..+.+.... .....+.++...++ ...+...+
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~-~~~K~~~l 329 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD-ETAKLRKL 329 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC-HHHHHHHH
Confidence 999999999999999994 455799999999999999999999999888877543 44566777777776 45677777
Q ss_pred HHHHHhc---CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCC
Q 015093 271 CDLYETL---AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQ 347 (413)
Q Consensus 271 ~~~~~~~---~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~ 347 (413)
..++... ..+|+||||++++.|+.+.+.|...++++..+||+.++.+|+.+++.|++|+..|||||+++++|+|+|+
T Consensus 330 ~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~d 409 (519)
T KOG0331|consen 330 GKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPD 409 (519)
T ss_pred HHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCcc
Confidence 7777665 4679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhcc
Q 015093 348 VSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADL 412 (413)
Q Consensus 348 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+++||++++|.+..+|+||+||+||+|+.|.+++|++..+......+.+.+....+.+|..+.++
T Consensus 410 V~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~ 474 (519)
T KOG0331|consen 410 VDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEY 474 (519)
T ss_pred ccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887653
No 4
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.4e-60 Score=445.37 Aligned_cols=373 Identities=31% Similarity=0.467 Sum_probs=331.4
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc-------cCceeE
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-------SLQCQA 111 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-------~~~~~~ 111 (413)
..+|+++++++.+.+.+...||..|+++|.++++.++.|+|+++++|||||||++|++++++.+... ..++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 3689999999999999999999999999999999999999999999999999999999999877432 124689
Q ss_pred EEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccc
Q 015093 112 LVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEA 191 (413)
Q Consensus 112 lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~ 191 (413)
||++|+++|+.|+.+.+..+....++++..+.|+.....+...+...++|+|+||+.|...+....+.+.+++++|+|||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 99999999999999999999988899999999998877777777778899999999999999888888899999999999
Q ss_pred hhhhccCcHHHHHHHHhhCCC--CceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHH
Q 015093 192 DEMLSRGFKDQIYDIFQHLPG--KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDT 269 (413)
Q Consensus 192 h~~~~~~~~~~~~~~~~~~~~--~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (413)
|++.+.++...+..++..++. ..+.+++|||++..........+..+..+...........+.+..... ....+...
T Consensus 167 d~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~-~~~~k~~~ 245 (423)
T PRK04837 167 DRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP-SNEEKMRL 245 (423)
T ss_pred HHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC-CHHHHHHH
Confidence 999999999999999988874 456789999999888888888888888777665554445555444433 33567778
Q ss_pred HHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCC
Q 015093 270 LCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 349 (413)
Q Consensus 270 l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~ 349 (413)
+..++.....+++||||++++.++.+++.|.+.++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|+++
T Consensus 246 l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~ 325 (423)
T PRK04837 246 LQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVT 325 (423)
T ss_pred HHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccC
Confidence 88888877778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhcc
Q 015093 350 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADL 412 (413)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+||++++|.+...|.||+||+||.|+.|.+++|+++.+...+..+.+++...++..+.+..++
T Consensus 326 ~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 388 (423)
T PRK04837 326 HVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYDSDAL 388 (423)
T ss_pred EEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCccCChhhh
Confidence 999999999999999999999999999999999999999999999999988877666554433
No 5
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.8e-60 Score=453.54 Aligned_cols=376 Identities=33% Similarity=0.523 Sum_probs=332.8
Q ss_pred cccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc-----cCcee
Q 015093 36 DEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-----SLQCQ 110 (413)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-----~~~~~ 110 (413)
..+..+|+.+++++.+.+.+.+.||..|+++|.++++.+++|+++++++|||||||++|++|++..+... ..++.
T Consensus 126 p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~ 205 (545)
T PTZ00110 126 PKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPI 205 (545)
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcE
Confidence 3446789999999999999999999999999999999999999999999999999999999998765432 23568
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEcc
Q 015093 111 ALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDE 190 (413)
Q Consensus 111 ~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE 190 (413)
+||++||++|+.|+.+.+++++...++++...+|+.....+...+...++|+|+||+.|.+.+......+..+++||+||
T Consensus 206 ~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDE 285 (545)
T PTZ00110 206 VLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDE 285 (545)
T ss_pred EEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeeh
Confidence 99999999999999999999998888999999999887777666777899999999999999998878888899999999
Q ss_pred chhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcC-CCEEEEecCCcc-ccCCceEEEEEeCccccHHH
Q 015093 191 ADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMN-KPVRILVKRDEL-TLEGIKQFHVNVDKEEWKLD 268 (413)
Q Consensus 191 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 268 (413)
||++.+.++...+.+++..+++..|++++|||++.....+...++. .++.+....... ....+.+....... ..+..
T Consensus 286 Ad~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~-~~k~~ 364 (545)
T PTZ00110 286 ADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEE-HEKRG 364 (545)
T ss_pred HHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEec-hhHHH
Confidence 9999999999999999999998999999999999888888887775 466555543332 22344444444433 45666
Q ss_pred HHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCC
Q 015093 269 TLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQ 346 (413)
Q Consensus 269 ~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 346 (413)
.+..++... ..+++||||++++.|+.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 365 ~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~ 444 (545)
T PTZ00110 365 KLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVK 444 (545)
T ss_pred HHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcc
Confidence 677777654 467999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhcc
Q 015093 347 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADL 412 (413)
Q Consensus 347 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
++++||+++.|.+..+|+||+||+||.|+.|.+++|+++.+......+.+.+....+.+|.++.++
T Consensus 445 ~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~ 510 (545)
T PTZ00110 445 DVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKL 510 (545)
T ss_pred cCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998875
No 6
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.2e-59 Score=442.47 Aligned_cols=363 Identities=36% Similarity=0.608 Sum_probs=331.0
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
.+|+.+++++.+.+.+...||..|+|+|.++++.+..|+++++++|||||||++|++++++.+.......+++|++||++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptre 83 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRE 83 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHH
Confidence 57999999999999999999999999999999999999999999999999999999999998876555668999999999
Q ss_pred HHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC
Q 015093 120 LAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG 198 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~ 198 (413)
|+.|+.++++.+.... +..+..++|+.....+...+...++|+|+||+.|..++.+....+.++++||+||||++.+.+
T Consensus 84 La~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g 163 (460)
T PRK11776 84 LADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMG 163 (460)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC
Confidence 9999999999987654 688999999988877777777888999999999999999888888899999999999999999
Q ss_pred cHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcC
Q 015093 199 FKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLA 278 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (413)
+...+..++..++...+++++|||+++....+...++..+..+...... ....+.+.+...+. ..+...+..++....
T Consensus 164 ~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~ 241 (460)
T PRK11776 164 FQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSP-DERLPALQRLLLHHQ 241 (460)
T ss_pred cHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCc-HHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999888899998888877765544 33446666666655 348888888888888
Q ss_pred CCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 358 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~ 358 (413)
.+++||||++++.++.+++.|.+.++.+..+||++++.+|+.+++.|++|+.+|||||+++++|+|+|++++||+++.|.
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~ 321 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELAR 321 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhcccccc
Q 015093 359 QPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEE 404 (413)
Q Consensus 359 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (413)
+...|+||+||+||.|+.|.+++++.+.+...+..+.+++...++.
T Consensus 322 ~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~ 367 (460)
T PRK11776 322 DPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNW 367 (460)
T ss_pred CHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCce
Confidence 9999999999999999999999999999999999999998876553
No 7
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-59 Score=440.86 Aligned_cols=369 Identities=44% Similarity=0.697 Sum_probs=341.7
Q ss_pred cccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc-ccCcee-E
Q 015093 34 SYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-ESLQCQ-A 111 (413)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~-~~~~~~-~ 111 (413)
........|+.+++++.+.+.+.+.||..|+|+|..+++.++.|+|+++.++||||||.+|++|+++.+.. ...... +
T Consensus 23 ~~~~~~~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~a 102 (513)
T COG0513 23 GEEKTPPEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSA 102 (513)
T ss_pred ccccccCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCce
Confidence 33344467999999999999999999999999999999999999999999999999999999999999763 222222 9
Q ss_pred EEEcccHHHHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEcc
Q 015093 112 LVLAPTRELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDE 190 (413)
Q Consensus 112 lvl~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE 190 (413)
||++||++|+.|..+.+..++... ++.+..++||.....+...+..+++|+|+||+.+++++.+..+.+..+.++|+||
T Consensus 103 Lil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDE 182 (513)
T COG0513 103 LILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDE 182 (513)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEecc
Confidence 999999999999999999999988 7999999999998888777777799999999999999999999999999999999
Q ss_pred chhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCcc--ccCCceEEEEEeCccccHHH
Q 015093 191 ADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDEL--TLEGIKQFHVNVDKEEWKLD 268 (413)
Q Consensus 191 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 268 (413)
|+++.+.+|...+..++..++.+.|.+++|||++.....+.+.++.+|..+....... ....+.+.+..+.....+..
T Consensus 183 ADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~ 262 (513)
T COG0513 183 ADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLE 262 (513)
T ss_pred HhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999998777775554 77889999999887667999
Q ss_pred HHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCC
Q 015093 269 TLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348 (413)
Q Consensus 269 ~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 348 (413)
.|..++......++||||++++.++.++..|...|+.+..+||++++.+|.+.++.|++|+.+|||||+++++|+|+|++
T Consensus 263 ~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v 342 (513)
T COG0513 263 LLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDV 342 (513)
T ss_pred HHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcccc
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccc-cHHHHHHHHHHhcccc
Q 015093 349 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DDRMLADIQRFYNVVI 402 (413)
Q Consensus 349 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~ 402 (413)
.+||+++.|.+...|+||+||+||+|..|.++.|+++. +...+..+.+.+....
T Consensus 343 ~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~ 397 (513)
T COG0513 343 SHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKL 397 (513)
T ss_pred ceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999986 8889999999887653
No 8
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=7.6e-59 Score=434.83 Aligned_cols=383 Identities=70% Similarity=1.108 Sum_probs=344.6
Q ss_pred cccccccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCce
Q 015093 30 DFFVSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQC 109 (413)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~ 109 (413)
.....+.+...+|+.+++++.+.+.+...||..|+++|.++++.+..++++++.+|||||||++|+++++..+.....+.
T Consensus 18 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~ 97 (401)
T PTZ00424 18 TIESNYDEIVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNAC 97 (401)
T ss_pred ccccccccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCc
Confidence 34445666789999999999999999999999999999999999999999999999999999999999998876555566
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEc
Q 015093 110 QALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLD 189 (413)
Q Consensus 110 ~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiD 189 (413)
++||++|+++|+.|+.+.+..++...+..+..+.|+.....+.......++|+|+||+.+...+......+.++++||+|
T Consensus 98 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViD 177 (401)
T PTZ00424 98 QALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILD 177 (401)
T ss_pred eEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEe
Confidence 89999999999999999999998877888888888887766666666778999999999999998877788889999999
Q ss_pred cchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHH
Q 015093 190 EADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDT 269 (413)
Q Consensus 190 E~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (413)
|+|++.+.++...+.++++..+...+++++|||+++........++..+..+...........+.+++...+....+...
T Consensus 178 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (401)
T PTZ00424 178 EADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDT 257 (401)
T ss_pred cHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHH
Confidence 99999888888889999999999999999999999888888888888887777666666667777777766665667777
Q ss_pred HHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCC
Q 015093 270 LCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 349 (413)
Q Consensus 270 l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~ 349 (413)
+..++......+++|||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 258 l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~ 337 (401)
T PTZ00424 258 LCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVS 337 (401)
T ss_pred HHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCC
Confidence 88888777778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhcc
Q 015093 350 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADL 412 (413)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+||+++.|.|...|+||+||+||.|+.|.|++++++.+...+..+.+.+...++++|+...+.
T Consensus 338 ~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 400 (401)
T PTZ00424 338 LVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPMEVADY 400 (401)
T ss_pred EEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcchhhc
Confidence 999999999999999999999999999999999999999999999999999999988776543
No 9
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=4.6e-59 Score=439.25 Aligned_cols=363 Identities=36% Similarity=0.614 Sum_probs=326.2
Q ss_pred CccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc------CceeEEEE
Q 015093 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES------LQCQALVL 114 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~------~~~~~lvl 114 (413)
+|+.+++++++.+.+.+.||..|+++|.++++.++.++++++++|||||||++|++|+++.+.... ...++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 688899999999999999999999999999999999999999999999999999999998875432 12479999
Q ss_pred cccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhh
Q 015093 115 APTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEM 194 (413)
Q Consensus 115 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~ 194 (413)
+||++|+.|+.+.++.+....++.+..+.|+.....+...+...++|+|+||+.|.+.+......++.+++||+||||++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999888889999999998877766666778899999999999999888888889999999999999
Q ss_pred hccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHH
Q 015093 195 LSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLY 274 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (413)
.+.++...+..++..++...+.+++|||+++....+...++.++..+...........+.+.....+. ..+...+..++
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~l~ 240 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK-KRKRELLSQMI 240 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCH-HHHHHHHHHHH
Confidence 99999999999999999999999999999988888888888888877665555455555555554443 45566677777
Q ss_pred HhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEc
Q 015093 275 ETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 354 (413)
Q Consensus 275 ~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~ 354 (413)
......++||||++++.++.+++.|...++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 241 ~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~ 320 (456)
T PRK10590 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320 (456)
T ss_pred HcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEe
Confidence 77777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhcccccc
Q 015093 355 DLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEE 404 (413)
Q Consensus 355 ~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (413)
+.|.+..+|+||+||+||.|..|.++++++..+...+..+.+.+...++.
T Consensus 321 ~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~ 370 (456)
T PRK10590 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPR 370 (456)
T ss_pred CCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999998887643
No 10
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=6.9e-59 Score=442.93 Aligned_cols=375 Identities=32% Similarity=0.534 Sum_probs=331.6
Q ss_pred ccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc-------ccC
Q 015093 35 YDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-------ESL 107 (413)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~-------~~~ 107 (413)
..++..+|+.+++++.+.+.+...||..|+++|.++++.+++|+++++++|||||||++|++|++..+.. ...
T Consensus 116 ~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~ 195 (518)
T PLN00206 116 VPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQR 195 (518)
T ss_pred CCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccC
Confidence 4466788999999999999999999999999999999999999999999999999999999999876532 224
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEE
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFV 187 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iI 187 (413)
+++++|++||++|+.|+.+.++.+....++.+..+.||.....+...+..+++|+|+||+.|.+.+......+.++++||
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lV 275 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLV 275 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEE
Confidence 56899999999999999999999988888888888888877766666667789999999999999998888889999999
Q ss_pred EccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHH
Q 015093 188 LDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKL 267 (413)
Q Consensus 188 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (413)
+||||++.+.++...+..++..++ ..|++++|||+++....+...+..++..+...........+.+....... ..+.
T Consensus 276 iDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~-~~k~ 353 (518)
T PLN00206 276 LDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVET-KQKK 353 (518)
T ss_pred eecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccc-hhHH
Confidence 999999999999999999988885 57999999999998888888888888877766555444555555555543 3455
Q ss_pred HHHHHHHHhcC--CCcEEEEEcCcccHHHHHHHHhh-CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCC
Q 015093 268 DTLCDLYETLA--ITQSVIFVNTRRKVDWLTDQMRS-RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGID 344 (413)
Q Consensus 268 ~~l~~~~~~~~--~~~~lIf~~~~~~a~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d 344 (413)
..+..++.... .+++||||+++..++.+++.|.. .++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|
T Consensus 354 ~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiD 433 (518)
T PLN00206 354 QKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVD 433 (518)
T ss_pred HHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCC
Confidence 66666665442 36899999999999999999975 5889999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhc
Q 015093 345 VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVAD 411 (413)
Q Consensus 345 ~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (413)
+|++++||+++.|.+..+|+||+||+||.|..|.+++|+++.+...+..+.+.+....+.+|.++++
T Consensus 434 ip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 500 (518)
T PLN00206 434 LLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELAN 500 (518)
T ss_pred cccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999876
No 11
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=6.8e-59 Score=447.41 Aligned_cols=367 Identities=39% Similarity=0.604 Sum_probs=333.6
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
..+|+.+++++.+.+++..+||.+|+++|.++++.+++++++++.+|||||||++|.+++++.+......+++||++||+
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTr 84 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcH
Confidence 35689999999999999999999999999999999999999999999999999999999998886655567899999999
Q ss_pred HHHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc
Q 015093 119 ELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR 197 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~ 197 (413)
+|+.|+.+.+..+.... ++.+..++|+.....+...+...++|+|+||+.+.+++....+.+.++++||+||||++.+.
T Consensus 85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~ 164 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRM 164 (629)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhc
Confidence 99999999999887655 78888999998877777777778899999999999999988888899999999999999999
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc
Q 015093 198 GFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL 277 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (413)
++...+..++..++...+++++|||++.....+...++.++..+.........+.+.+.+..... ..+...+..++...
T Consensus 165 gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~-~~k~~~L~~~L~~~ 243 (629)
T PRK11634 165 GFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG-MRKNEALVRFLEAE 243 (629)
T ss_pred ccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEech-hhHHHHHHHHHHhc
Confidence 99999999999999999999999999999988999999988887776666555666666655543 45778888888887
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 357 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~ 357 (413)
...++||||+++..++.+++.|++.++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|
T Consensus 244 ~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P 323 (629)
T PRK11634 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIP 323 (629)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCC
Q 015093 358 TQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELP 406 (413)
Q Consensus 358 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (413)
.+...|+||+||+||.|+.|.+++++++.+...+..+.+.+...++.++
T Consensus 324 ~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~ 372 (629)
T PRK11634 324 MDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVE 372 (629)
T ss_pred CCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceec
Confidence 9999999999999999999999999999999999999998888776653
No 12
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.1e-58 Score=434.45 Aligned_cols=364 Identities=34% Similarity=0.550 Sum_probs=330.3
Q ss_pred CccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc----cCceeEEEEcc
Q 015093 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE----SLQCQALVLAP 116 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~----~~~~~~lvl~P 116 (413)
.|+.+++++.+.+.+...||..|+++|.++++.++.|+++++++|||+|||++|++++++.+... ....+++|++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 68899999999999999999999999999999999999999999999999999999999876432 22458999999
Q ss_pred cHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc
Q 015093 117 TRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS 196 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 196 (413)
+++|+.|+.+.+..+....++.+..++|+.....+...+...++|+|+||+.|.+.+....+.+..+++||+||||++.+
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~ 161 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLD 161 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhC
Confidence 99999999999999999889999999999988777777777889999999999999998888888899999999999999
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEeeeCCh-hHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHH
Q 015093 197 RGFKDQIYDIFQHLPGKIQVGVFSATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYE 275 (413)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (413)
.++...+..+....+...+++++|||+.. ....+...++..+..+...........+.+++...+....+...+..+++
T Consensus 162 ~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~ 241 (434)
T PRK11192 162 MGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLK 241 (434)
T ss_pred CCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHh
Confidence 99999999999999888999999999975 46777788888888777666555556677777766666678888888888
Q ss_pred hcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcC
Q 015093 276 TLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355 (413)
Q Consensus 276 ~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 355 (413)
....+++||||++++.++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 242 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d 321 (434)
T PRK11192 242 QPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFD 321 (434)
T ss_pred cCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEEC
Confidence 76778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhcccccc
Q 015093 356 LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEE 404 (413)
Q Consensus 356 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (413)
.|.|...|+||+||+||.|..|.+++++...|...+..+.+++...+..
T Consensus 322 ~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~ 370 (434)
T PRK11192 322 MPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKA 370 (434)
T ss_pred CCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999988776543
No 13
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.9e-58 Score=442.25 Aligned_cols=365 Identities=33% Similarity=0.527 Sum_probs=325.2
Q ss_pred CccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc-------CceeEEE
Q 015093 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES-------LQCQALV 113 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~-------~~~~~lv 113 (413)
.|+.+++++.+.+.|.+.||..|+++|.++++.+++|+|+++.+|||||||++|++++++.+.... ..+++||
T Consensus 10 ~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLI 89 (572)
T PRK04537 10 TFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALI 89 (572)
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEE
Confidence 588999999999999999999999999999999999999999999999999999999998774321 2468999
Q ss_pred EcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC-CCCCCCccEEEEccch
Q 015093 114 LAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ-SLRPDYIRMFVLDEAD 192 (413)
Q Consensus 114 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~-~~~~~~~~~iIiDE~h 192 (413)
++||++|+.|+++.+.+++...++.+..++|+.....+...+...++|+|+||+.|.+.+... .+.+..+++||+||||
T Consensus 90 l~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh 169 (572)
T PRK04537 90 LAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD 169 (572)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHH
Confidence 999999999999999999988899999999999887777777778899999999999988765 3567788999999999
Q ss_pred hhhccCcHHHHHHHHhhCCC--CceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHH
Q 015093 193 EMLSRGFKDQIYDIFQHLPG--KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTL 270 (413)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~--~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 270 (413)
++.+.++...+..++..++. ..|++++|||++.....+...++..+..+...........+.+.+... ....+...+
T Consensus 170 ~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~-~~~~k~~~L 248 (572)
T PRK04537 170 RMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFP-ADEEKQTLL 248 (572)
T ss_pred HHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEec-CHHHHHHHH
Confidence 99999999999999998886 678999999999888888888888877666555544445555544433 335677788
Q ss_pred HHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCE
Q 015093 271 CDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 350 (413)
Q Consensus 271 ~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~ 350 (413)
..++......++||||++++.++.+++.|.+.++.+..+||+++..+|.++++.|++|+.+|||||+++++|||+|++++
T Consensus 249 ~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~ 328 (572)
T PRK04537 249 LGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKY 328 (572)
T ss_pred HHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCE
Confidence 88888777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCC
Q 015093 351 VINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELP 406 (413)
Q Consensus 351 vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (413)
||+++.|.+...|+||+||+||.|+.|.+++|+++.+...+..+.+++...++..|
T Consensus 329 VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~~ 384 (572)
T PRK04537 329 VYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVEP 384 (572)
T ss_pred EEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCccc
Confidence 99999999999999999999999999999999999999999999999888765443
No 14
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.9e-57 Score=427.96 Aligned_cols=365 Identities=33% Similarity=0.525 Sum_probs=323.5
Q ss_pred ccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc-------Cce
Q 015093 37 EVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES-------LQC 109 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~-------~~~ 109 (413)
+....|..+++++.+.+.|.+.||..|+++|.++++.+..|+|+++.+|||||||++|++++++.+.... ...
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 3456788899999999999999999999999999999999999999999999999999999998875542 145
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH-hcCCcEEEeChHHHHHHHHcCCCCCCCccEEEE
Q 015093 110 QALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL-SAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVL 188 (413)
Q Consensus 110 ~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIi 188 (413)
++||++||++|+.|+.+.++.+....++.+..++|+.........+ ...++|+|+||++|......+...+.++++||+
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 8999999999999999999999888889999999987665554443 346899999999999988888888889999999
Q ss_pred ccchhhhccCcHHHHHHHHhhCCC--CceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccH
Q 015093 189 DEADEMLSRGFKDQIYDIFQHLPG--KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWK 266 (413)
Q Consensus 189 DE~h~~~~~~~~~~~~~~~~~~~~--~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (413)
||+|.+.+.++...+..+++.++. ..+++++|||.+.+.......+...+..+...........+.+....... ..+
T Consensus 244 DEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~k 322 (475)
T PRK01297 244 DEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAG-SDK 322 (475)
T ss_pred chHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecc-hhH
Confidence 999999988888889999888864 56899999999988888888888888877666655555555555444443 456
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCC
Q 015093 267 LDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQ 346 (413)
Q Consensus 267 ~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 346 (413)
...+..++......++||||++++.++.+++.|.+.++.+..+||+++..+|.++++.|++|++++||||+++++|+|+|
T Consensus 323 ~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 323 YKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHID 402 (475)
T ss_pred HHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCccc
Confidence 77788888877778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhcccc
Q 015093 347 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVI 402 (413)
Q Consensus 347 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (413)
++++||+++.|.|..+|+||+||+||.|++|.+++|+++.|...+..+.++++..+
T Consensus 403 ~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 403 GISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKI 458 (475)
T ss_pred CCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999998876
No 15
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.4e-57 Score=399.62 Aligned_cols=366 Identities=33% Similarity=0.539 Sum_probs=341.9
Q ss_pred cccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhc---------cc
Q 015093 34 SYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL---------DY 104 (413)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l---------~~ 104 (413)
..+++..+|+..+++.++++.+...|+..|+|+|+.+++..+.++++|-.+.||||||.++++|++..+ .+
T Consensus 239 ~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en 318 (673)
T KOG0333|consen 239 RLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLEN 318 (673)
T ss_pred CCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhh
Confidence 466778999999999999999999999999999999999999999999999999999999999887654 33
Q ss_pred ccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCcc
Q 015093 105 ESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIR 184 (413)
Q Consensus 105 ~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~ 184 (413)
...++.++++.||++|++|..++-.+++...++++..+.||.....+.-.+..+|.|+|+||+.|.+.+.+..+.++.+.
T Consensus 319 ~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qct 398 (673)
T KOG0333|consen 319 NIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCT 398 (673)
T ss_pred cccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCc
Confidence 44578999999999999999999999999999999999999998877667778999999999999999999999999999
Q ss_pred EEEEccchhhhccCcHHHHHHHHhhCCCC-------------------------ceEEEEeeeCChhHHHHHHHhcCCCE
Q 015093 185 MFVLDEADEMLSRGFKDQIYDIFQHLPGK-------------------------IQVGVFSATMPPEALEITRKFMNKPV 239 (413)
Q Consensus 185 ~iIiDE~h~~~~~~~~~~~~~~~~~~~~~-------------------------~~~i~lSAT~~~~~~~~~~~~~~~~~ 239 (413)
++|+|||+++.+.+|...+.+++..+|.. .+.+.+|||+++....+++.|+..|+
T Consensus 399 yvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv 478 (673)
T KOG0333|consen 399 YVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV 478 (673)
T ss_pred eEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe
Confidence 99999999999999999999999998741 57899999999999999999999999
Q ss_pred EEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHH
Q 015093 240 RILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRD 319 (413)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~ 319 (413)
.+.+.......+.+.+.+..+... .+...|..+++.....+++||+|+++.|+.+++.|.+.|+++..+||+-++++|+
T Consensus 479 ~vtig~~gk~~~rveQ~v~m~~ed-~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe 557 (673)
T KOG0333|consen 479 VVTIGSAGKPTPRVEQKVEMVSED-EKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRE 557 (673)
T ss_pred EEEeccCCCCccchheEEEEecch-HHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHH
Confidence 999999888888899888888774 4699999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhc
Q 015093 320 IIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYN 399 (413)
Q Consensus 320 ~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 399 (413)
.+++.|++|..+|||||+++++|||+|++.+||+++.+.|..+|.|||||+||+|+.|.++.|+++.|...++++.+.+-
T Consensus 558 ~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~ 637 (673)
T KOG0333|consen 558 NALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALR 637 (673)
T ss_pred HHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred c
Q 015093 400 V 400 (413)
Q Consensus 400 ~ 400 (413)
.
T Consensus 638 e 638 (673)
T KOG0333|consen 638 E 638 (673)
T ss_pred H
Confidence 3
No 16
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-56 Score=393.45 Aligned_cols=360 Identities=34% Similarity=0.552 Sum_probs=335.0
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc---CceeEEEEc
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES---LQCQALVLA 115 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~---~~~~~lvl~ 115 (413)
..+|.+++|+-++.+++..+||..|+|+|...|+-.+-|++++-++.||||||.+|.+|+++++.-.. ...++||+|
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 56899999999999999999999999999999999999999999999999999999999999986543 235899999
Q ss_pred ccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-CCCCCCCccEEEEccchhh
Q 015093 116 PTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR-QSLRPDYIRMFVLDEADEM 194 (413)
Q Consensus 116 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~-~~~~~~~~~~iIiDE~h~~ 194 (413)
||++|+.|.+...++++...++.+.+..||.+...+...+...++|+|+||+.|.+++.+ .++.++++.++|+|||+++
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRM 339 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRM 339 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHH
Confidence 999999999999999999999999999999999999999999999999999999999986 4678999999999999999
Q ss_pred hccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCc--cccHHHHHHH
Q 015093 195 LSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDK--EEWKLDTLCD 272 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 272 (413)
+..+|...++++++.++++.|.+++|||+...+.+++..-+..|+.+.+.+.....+.+.+.+..... ....-..+..
T Consensus 340 LeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~ 419 (691)
T KOG0338|consen 340 LEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLAS 419 (691)
T ss_pred HHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888888877776653 2345567777
Q ss_pred HHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEE
Q 015093 273 LYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 (413)
Q Consensus 273 ~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi 352 (413)
++...-..+++||+.+++.|..+.-.|.-.|+++.-+||.+++.+|-+.++.|++++++|||||+++++|+|++++.+||
T Consensus 420 l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVI 499 (691)
T KOG0338|consen 420 LITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVI 499 (691)
T ss_pred HHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEE
Confidence 78777778999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHh
Q 015093 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFY 398 (413)
Q Consensus 353 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 398 (413)
++..|.+...|+||+||+.|+|+.|.+++++.+.+...++.+.+.-
T Consensus 500 Ny~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 500 NYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred eccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999888877664
No 17
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-57 Score=374.67 Aligned_cols=369 Identities=39% Similarity=0.656 Sum_probs=351.5
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
.+.|+++.|..++...+...||..|.|+|.++++..+.|++++..+..|+|||.+|++|.++.+......-.+++++|++
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtr 163 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTR 163 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecc
Confidence 57788899999999999999999999999999999999999999999999999999999999998888788999999999
Q ss_pred HHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC
Q 015093 119 ELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG 198 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~ 198 (413)
+|+.|..+.+++++...++.+...+||++..++.-.+....+++|+||+.++++..+....++...++|+|||+.+++..
T Consensus 164 elALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~ 243 (459)
T KOG0326|consen 164 ELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVD 243 (459)
T ss_pred hhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchh
Confidence 99999999999999999999999999999888887788889999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcC
Q 015093 199 FKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLA 278 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (413)
|...+..++..+|+..|+++.|||.+-....+..+++.+|+.+.. .++..+.++.+++..+.. ..++.-|..++.+..
T Consensus 244 F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INL-M~eLtl~GvtQyYafV~e-~qKvhCLntLfskLq 321 (459)
T KOG0326|consen 244 FQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINL-MEELTLKGVTQYYAFVEE-RQKVHCLNTLFSKLQ 321 (459)
T ss_pred hhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeeh-hhhhhhcchhhheeeech-hhhhhhHHHHHHHhc
Confidence 999999999999999999999999999999999999999998775 456778888888887776 568889999999998
Q ss_pred CCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 358 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~ 358 (413)
-...+|||||.+.++.+++.+.+.|+.+..+|++|.++.|..+...|++|.++.||||+.+.+|+|++.+++||+++.|.
T Consensus 322 INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk 401 (459)
T KOG0326|consen 322 INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPK 401 (459)
T ss_pred ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcch
Q 015093 359 QPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANV 409 (413)
Q Consensus 359 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (413)
++..|.+|+||.||.|..|.++.+++-.|...++.+++.|+..++++|...
T Consensus 402 ~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~i 452 (459)
T KOG0326|consen 402 NAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNI 452 (459)
T ss_pred CHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcC
Confidence 999999999999999999999999999999999999999999999999754
No 18
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-55 Score=381.92 Aligned_cols=352 Identities=33% Similarity=0.540 Sum_probs=313.7
Q ss_pred cCccCCC--CCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc--cC---ceeEE
Q 015093 40 DSFDSMG--LKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE--SL---QCQAL 112 (413)
Q Consensus 40 ~~~~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~--~~---~~~~l 112 (413)
.+|+.++ |++++.+++...||...+|+|..+++.+++++|+++.++||||||++|++|+++.+... .. ...++
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 3455554 56999999999999999999999999999999999999999999999999999988322 11 13589
Q ss_pred EEcccHHHHHHHHHHHHHhhcc-cCceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcCCC--CCCCccEEEE
Q 015093 113 VLAPTRELAQQIEKVMRALGDY-MGVKVHACVGGTSVREDQRILS-AGVHVVVGTPGRVFDMLRRQSL--RPDYIRMFVL 188 (413)
Q Consensus 113 vl~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~T~~~l~~~~~~~~~--~~~~~~~iIi 188 (413)
||+||++|+.|+.+.+..|... .+++..++.||.+...+...+. ..++|+|+||+.|.+++.+... ...+++++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999988776 5888999999988877766554 5678999999999999987543 4458999999
Q ss_pred ccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCcc--ccCCceEEEEEeCccccH
Q 015093 189 DEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDEL--TLEGIKQFHVNVDKEEWK 266 (413)
Q Consensus 189 DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 266 (413)
||||++.+.+|...++.++..+|+..+..++|||......++.+..+.+|+.+.+..... .+..+...+..+.. ..+
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a-~eK 242 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEA-DEK 242 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecH-HHH
Confidence 999999999999999999999999999999999999999999999999999988877665 67777777777766 679
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCC
Q 015093 267 LDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGID 344 (413)
Q Consensus 267 ~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d 344 (413)
...+.+++.....++++||.++....++.+..|... ...+..+||.+++..|..+++.|.+....+|+||+++++|+|
T Consensus 243 ~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlD 322 (567)
T KOG0345|consen 243 LSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLD 322 (567)
T ss_pred HHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCC
Confidence 999999999999999999999999999999999875 568999999999999999999999988889999999999999
Q ss_pred CCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHH
Q 015093 345 VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLA 392 (413)
Q Consensus 345 ~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 392 (413)
+|+++.||++|+|.++..|.||.||++|+|+.|.+++|+.+.+..+..
T Consensus 323 ip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYve 370 (567)
T KOG0345|consen 323 IPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVE 370 (567)
T ss_pred CCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHH
Confidence 999999999999999999999999999999999999999996654433
No 19
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=9.3e-55 Score=381.14 Aligned_cols=356 Identities=31% Similarity=0.483 Sum_probs=321.5
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc----CceeEEEE
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES----LQCQALVL 114 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~----~~~~~lvl 114 (413)
...|+...+++...++++.+||..++++|..+++.++.|+++++.|.||||||+++++|+++.+.+.. .+-.++|+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 46788899999999999999999999999999999999999999999999999999999999885543 34569999
Q ss_pred cccHHHHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCC-CCCCCccEEEEccch
Q 015093 115 APTRELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQS-LRPDYIRMFVLDEAD 192 (413)
Q Consensus 115 ~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~-~~~~~~~~iIiDE~h 192 (413)
|||++|+.|.+.+.+.+.... +..+..+.||.+.......+...++|+|+||+.|.+++.+.+ +...+.+++|+||||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD 240 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch
Confidence 999999999999999999888 899999999999888887777799999999999999998754 456667899999999
Q ss_pred hhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCC-CEEEEecC--CccccCCceEEEEEeCccccHHHH
Q 015093 193 EMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNK-PVRILVKR--DELTLEGIKQFHVNVDKEEWKLDT 269 (413)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 269 (413)
++++.+|...+..++..+|...|.+++|||.++.+.+..+..+.. +..+.... ...+.+.+.+-+...+. ...+..
T Consensus 241 rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~-~~~f~l 319 (543)
T KOG0342|consen 241 RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPS-DSRFSL 319 (543)
T ss_pred hhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccc-cchHHH
Confidence 999999999999999999999999999999999999988877766 54444433 33344566666665555 345888
Q ss_pred HHHHHHhcCC-CcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCC
Q 015093 270 LCDLYETLAI-TQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348 (413)
Q Consensus 270 l~~~~~~~~~-~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 348 (413)
+..+++++.. .+++|||++......+++.|+..++++..+||+.++..|-.+..+|++.+..||+||+++++|+|+|++
T Consensus 320 l~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V 399 (543)
T KOG0342|consen 320 LYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDV 399 (543)
T ss_pred HHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCc
Confidence 8899988866 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHH
Q 015093 349 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQ 395 (413)
Q Consensus 349 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 395 (413)
++||++++|.++.+|+||+||++|.|+.|.++++..+.+..+++.++
T Consensus 400 ~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 400 DWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred eEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988887
No 20
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-54 Score=382.73 Aligned_cols=365 Identities=30% Similarity=0.470 Sum_probs=329.0
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc----CceeEEEE
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES----LQCQALVL 114 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~----~~~~~lvl 114 (413)
...|++++++..+.+.|+..+|..|+.+|+++|+..+.|++++-.+.||||||+++++|+++.|...+ .|.-+|||
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 36899999999999999999999999999999999999999999999999999999999999885443 34569999
Q ss_pred cccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC-CCCCCCccEEEEccchh
Q 015093 115 APTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ-SLRPDYIRMFVLDEADE 193 (413)
Q Consensus 115 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~-~~~~~~~~~iIiDE~h~ 193 (413)
.||++|+.|+++.+.+.+...+.+.+++.||.+.......+ ...+|+||||+.|++++... .+..+++.++|+|||++
T Consensus 148 SPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR 226 (758)
T KOG0343|consen 148 SPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADR 226 (758)
T ss_pred cchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHH
Confidence 99999999999999999999999999999999866655544 45799999999999999875 45677899999999999
Q ss_pred hhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecC--CccccCCceEEEEEeCccccHHHHHH
Q 015093 194 MLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKR--DELTLEGIKQFHVNVDKEEWKLDTLC 271 (413)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ 271 (413)
+++.+|...+..++..+|...|.+++|||......++++..+.+|..+.+.. ....|..+.+.+..++. ..++..|.
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l-~~Ki~~L~ 305 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPL-EDKIDMLW 305 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEeh-hhHHHHHH
Confidence 9999999999999999999999999999999999999999999988776653 34667788888887776 68999999
Q ss_pred HHHHhcCCCcEEEEEcCcccHHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCC
Q 015093 272 DLYETLAITQSVIFVNTRRKVDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 349 (413)
Q Consensus 272 ~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~ 349 (413)
.+++.+...+.|||+.|.+++..+++.+.+. |..+..+||.|++..|.++...|...+.-||+||+++++|+|+|.++
T Consensus 306 sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVd 385 (758)
T KOG0343|consen 306 SFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVD 385 (758)
T ss_pred HHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccc
Confidence 9999999999999999999999999999875 77899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHhhhcccCCCCCcceEEEEecccc-HHHHHHHHHHhccccccCC
Q 015093 350 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD-DRMLADIQRFYNVVIEELP 406 (413)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 406 (413)
+||.+++|.++.+|+||+||+.|.+..|.+++++.+++ ..++..++... ...+.+.
T Consensus 386 wViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i~ 442 (758)
T KOG0343|consen 386 WVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKK-IPIKEIK 442 (758)
T ss_pred eEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcC-CCHHhhc
Confidence 99999999999999999999999999999999999998 55666665543 4344333
No 21
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-54 Score=363.73 Aligned_cols=368 Identities=36% Similarity=0.507 Sum_probs=325.3
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
..+|+.+|+++|+.+.++++|+..|+|+|..+++.|+.|+|++=+|.||||||.++.+|+++.|.....+..++|++||+
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTr 85 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTR 85 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999898999999999
Q ss_pred HHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC----CCCCCCccEEEEccchhh
Q 015093 119 ELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ----SLRPDYIRMFVLDEADEM 194 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~----~~~~~~~~~iIiDE~h~~ 194 (413)
+|+-|..+.|..++...++++.++.||...-.+...+...++++++||+.+..++... .+.++.+.++|+|||+.+
T Consensus 86 ELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrv 165 (442)
T KOG0340|consen 86 ELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRV 165 (442)
T ss_pred HHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhh
Confidence 9999999999999999999999999999988887788888999999999999888765 344667899999999999
Q ss_pred hccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCC--CEEEEecCCccccCCceEEEEEeCccccHHHHHHH
Q 015093 195 LSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNK--PVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCD 272 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 272 (413)
.+..|...+..+....|...|.+++|||+.........--... ...+.........+.+.+-+..++. ..+..-+..
T Consensus 166 L~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~-~vkdaYLv~ 244 (442)
T KOG0340|consen 166 LAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSI-DVKDAYLVH 244 (442)
T ss_pred hccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecch-hhhHHHHHH
Confidence 9999999999999999999999999999987665544333332 2333444455555666666665554 334444444
Q ss_pred HHHhc---CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCC
Q 015093 273 LYETL---AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 349 (413)
Q Consensus 273 ~~~~~---~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~ 349 (413)
+++.. ..+.++||+++..+|+.++..|+..++.+..+||.|++.+|-..+..|+++..+|||||+++++|+|+|.+.
T Consensus 245 ~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~ 324 (442)
T KOG0340|consen 245 LLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVE 324 (442)
T ss_pred HHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCcee
Confidence 44433 457899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCc
Q 015093 350 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPA 407 (413)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (413)
.||+++.|.++.+|+||+||..|+|+.|.++.++++.|.+.+..+++-.++.+.+.+.
T Consensus 325 LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~ 382 (442)
T KOG0340|consen 325 LVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNK 382 (442)
T ss_pred EEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999999999999999999999999999999888776553
No 22
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-54 Score=381.96 Aligned_cols=372 Identities=34% Similarity=0.516 Sum_probs=337.7
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccC----------c
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESL----------Q 108 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~----------~ 108 (413)
+..|+...+.+.+...++..++..|+|+|+-+++.+..|++++++|+||||||.++++|++..+..... .
T Consensus 73 i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~ 152 (482)
T KOG0335|consen 73 IPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVY 152 (482)
T ss_pred cccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCC
Confidence 457888889999999999999999999999999999999999999999999999999999998855422 4
Q ss_pred eeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEE
Q 015093 109 CQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVL 188 (413)
Q Consensus 109 ~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIi 188 (413)
+.++|++||++|+.|.+++.+++.....+.....+|+.+...+......+|+|+++||+.|.+.++...+.+++++++|+
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vL 232 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVL 232 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEe
Confidence 78999999999999999999999988899999999998888887888889999999999999999999999999999999
Q ss_pred ccchhhhc-cCcHHHHHHHHhhCCC----CceEEEEeeeCChhHHHHHHHhcCC-CEEEEecCCccccCCceEEEEEeCc
Q 015093 189 DEADEMLS-RGFKDQIYDIFQHLPG----KIQVGVFSATMPPEALEITRKFMNK-PVRILVKRDELTLEGIKQFHVNVDK 262 (413)
Q Consensus 189 DE~h~~~~-~~~~~~~~~~~~~~~~----~~~~i~lSAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (413)
|||+++.+ .+|...+.+++..... ..|.+++|||.+.........+..+ .+.+.+..-....+.+.+....+..
T Consensus 233 DEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~ 312 (482)
T KOG0335|consen 233 DEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNE 312 (482)
T ss_pred cchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecc
Confidence 99999998 8899999999887743 6789999999998888777777766 5666666677777888888888887
Q ss_pred cccHHHHHHHHHHhcC----CC-----cEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEE
Q 015093 263 EEWKLDTLCDLYETLA----IT-----QSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVL 333 (413)
Q Consensus 263 ~~~~~~~l~~~~~~~~----~~-----~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 333 (413)
. .+...|.+++.... .+ +++|||.+++.|..++..|...++++..+||.-++.+|.+.+..|++|+..+|
T Consensus 313 ~-~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvl 391 (482)
T KOG0335|consen 313 M-EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVL 391 (482)
T ss_pred h-hhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceE
Confidence 4 45666666665332 33 79999999999999999999999999999999999999999999999999999
Q ss_pred EEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhc
Q 015093 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVAD 411 (413)
Q Consensus 334 i~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (413)
|||+++++|+|+|++++||+++.|.+..+|+||+||+||.|+.|.++.|++..+....+.+.+.+....+.+|.||.+
T Consensus 392 VaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~wl~~ 469 (482)
T KOG0335|consen 392 VATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQWLSE 469 (482)
T ss_pred EEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999875
No 23
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-53 Score=363.48 Aligned_cols=383 Identities=72% Similarity=1.081 Sum_probs=361.1
Q ss_pred CCcccccccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccC
Q 015093 28 GQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESL 107 (413)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~ 107 (413)
+..+..+|.+...+|++++|.+.+++.+..+||..|..+|..|+..+.+|.++++.+.+|+|||.++..+++..+.....
T Consensus 14 ~~~iesn~~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~k 93 (397)
T KOG0327|consen 14 EGVIESNWNEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVK 93 (397)
T ss_pred cccccccHHHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchH
Confidence 56677889999999999999999999999999999999999999999999999999999999999999999998877766
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHH-HHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEE
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQ-RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMF 186 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~i 186 (413)
...++++.|+++|+.|.......++...+.++..+.|+.....+. ......++|+++||+.....+....+....+++.
T Consensus 94 e~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmf 173 (397)
T KOG0327|consen 94 ETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMF 173 (397)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEE
Confidence 778999999999999999999999999999999999988877444 4445568999999999999998888888889999
Q ss_pred EEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccH
Q 015093 187 VLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWK 266 (413)
Q Consensus 187 IiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (413)
|+||++++...++...+..+++.++++.|++++|||.+.+.....+.++.+|+.+.....+....++.+++..+...+ +
T Consensus 174 vlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~-k 252 (397)
T KOG0327|consen 174 VLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE-K 252 (397)
T ss_pred eecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988755 8
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCC
Q 015093 267 LDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQ 346 (413)
Q Consensus 267 ~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 346 (413)
...+..+.. .....+||||++..+..+...|...+..+..+|+++.+.+|..++..|+.|..+|||+|..+++|+|+.
T Consensus 253 ~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~ 330 (397)
T KOG0327|consen 253 LDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQ 330 (397)
T ss_pred ccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchh
Confidence 888888888 456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhccC
Q 015093 347 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413 (413)
Q Consensus 347 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (413)
.+..|++++.|.....|++|+||+||.|++|.++.++++.+...++.+.+||...++++|++..+|+
T Consensus 331 ~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~l~ 397 (397)
T KOG0327|consen 331 QVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFADLL 397 (397)
T ss_pred hcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999998875
No 24
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9e-53 Score=369.20 Aligned_cols=380 Identities=32% Similarity=0.479 Sum_probs=354.8
Q ss_pred ccccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc-----ccC
Q 015093 33 VSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-----ESL 107 (413)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~-----~~~ 107 (413)
.+...+..+|+.+++++.+..++.+..|.+|+++|.++++..++|++++=.+.||||||.+++.+++..+.. ...
T Consensus 216 ~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~ 295 (731)
T KOG0339|consen 216 SSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGE 295 (731)
T ss_pred CCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCC
Confidence 345566789999999999999999999999999999999999999999999999999999999888876632 244
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEE
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFV 187 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iI 187 (413)
++..+|+|||++|+.|.+.++++|+..+++++..++||.....+.+.+..++.|+|+||+.|.+++..+...+.+++++|
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV 375 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLV 375 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEE
Confidence 67899999999999999999999999999999999999999888888889999999999999999999999999999999
Q ss_pred EccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHH
Q 015093 188 LDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKL 267 (413)
Q Consensus 188 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (413)
+||++++.+.+|..++..|....+++.|.+++|||.+..+..+.+.++..|+.+....-......+.+....+.....++
T Consensus 376 ~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl 455 (731)
T KOG0339|consen 376 LDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKL 455 (731)
T ss_pred EechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHH
Confidence 99999999999999999999999999999999999999999999999999998887765566678888888888888888
Q ss_pred HHHHHHHH-hcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCC
Q 015093 268 DTLCDLYE-TLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQ 346 (413)
Q Consensus 268 ~~l~~~~~-~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 346 (413)
..|..-+- ....+++|||+.-+..++.++..|+-.++++..+||++.+.+|.+++..|+.+...||++|+.+.+|+|+|
T Consensus 456 ~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~ 535 (731)
T KOG0339|consen 456 NWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIP 535 (731)
T ss_pred HHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCcc
Confidence 87776554 44668999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhcc
Q 015093 347 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADL 412 (413)
Q Consensus 347 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
.+..||+++...+...+.||+||.||.|..|.+++++++.|.++...+.+.|.-.-+-+|.++.+|
T Consensus 536 ~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dl 601 (731)
T KOG0339|consen 536 SIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDL 601 (731)
T ss_pred ccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999876
No 25
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-52 Score=358.87 Aligned_cols=364 Identities=32% Similarity=0.526 Sum_probs=328.8
Q ss_pred CCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcc------cccCceeEEEEcccH
Q 015093 45 MGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLD------YESLQCQALVLAPTR 118 (413)
Q Consensus 45 ~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~------~~~~~~~~lvl~P~~ 118 (413)
+.-.+++.+.+++.||..|+|+|.++++-++.|.+++.++.||+|||++++++.+-.+. ....++.+|+++||+
T Consensus 225 Fq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptr 304 (629)
T KOG0336|consen 225 FQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTR 304 (629)
T ss_pred HhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccH
Confidence 46778899999999999999999999999999999999999999999999998876653 234567899999999
Q ss_pred HHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC
Q 015093 119 ELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG 198 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~ 198 (413)
+|+.|..-++.++. ..+....+++|+.+...+...+..+.+|+++||+.|.++.......+..+.++|+|||+++++.+
T Consensus 305 eLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMg 383 (629)
T KOG0336|consen 305 ELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMG 383 (629)
T ss_pred HHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhccc
Confidence 99999988887764 34777888888888888888888899999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCcccc-CCceEEEEEeCccccHHHHHHHHHHhc
Q 015093 199 FKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTL-EGIKQFHVNVDKEEWKLDTLCDLYETL 277 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (413)
|..++.+++-..+++.+.++.|||+++.+..+...|+.+|..+....-.+.. ..+.+.+ .+.....++..+..+.+..
T Consensus 384 FEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~~d~~k~~~~~~f~~~m 462 (629)
T KOG0336|consen 384 FEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVTTDSEKLEIVQFFVANM 462 (629)
T ss_pred ccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE-EecccHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999988877665544 3444444 5555567787777777766
Q ss_pred -CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC
Q 015093 278 -AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 278 -~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 356 (413)
...|++|||.++..|+.+...|.-.|+....+||+-.+.+|+..++.|++|+++|||+|+.+++|+|++++.||++++.
T Consensus 463 s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDF 542 (629)
T KOG0336|consen 463 SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDF 542 (629)
T ss_pred CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCC
Confidence 4579999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchh
Q 015093 357 PTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVA 410 (413)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (413)
|.+..+|.||+||+||+|+.|.++.|++..|-.++..+.+.|+...+.+|++|-
T Consensus 543 P~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~ 596 (629)
T KOG0336|consen 543 PRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELV 596 (629)
T ss_pred CccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHH
Confidence 999999999999999999999999999999999999999999999999999874
No 26
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-51 Score=355.90 Aligned_cols=361 Identities=31% Similarity=0.463 Sum_probs=319.6
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc------cCceeEEE
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE------SLQCQALV 113 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~------~~~~~~lv 113 (413)
..|++++|++.+++++.+.||..|+-+|..+|+.+++|+|++..|.||||||.+|++|+++.+... ..++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 799999999999999999999999999999999999999999999999999999999999987432 33567999
Q ss_pred EcccHHHHHHHHHHHHHhhcccC--ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCC-CCCCCccEEEEcc
Q 015093 114 LAPTRELAQQIEKVMRALGDYMG--VKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQS-LRPDYIRMFVLDE 190 (413)
Q Consensus 114 l~P~~~l~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~-~~~~~~~~iIiDE 190 (413)
++||++|++|.+..+.++....+ +++.-+..+.+.......+.+.++|+|+||..+..++..+. .....++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999988765543 44444444444444556677889999999999999998877 5677799999999
Q ss_pred chhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccc-cCCceEEEEEeCccccHHHH
Q 015093 191 ADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT-LEGIKQFHVNVDKEEWKLDT 269 (413)
Q Consensus 191 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 269 (413)
|+.+...+|...+.++...+|..+|.++||||.+.++..+.+.++.+|+.......+.. +..+.++...+. ..++...
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs-e~DKfll 257 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS-EEDKFLL 257 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec-cchhHHH
Confidence 99999999999999999999999999999999999999999999999998777766665 456777777766 5788888
Q ss_pred HHHHHHhc-CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCc----------
Q 015093 270 LCDLYETL-AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDL---------- 338 (413)
Q Consensus 270 l~~~~~~~-~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~---------- 338 (413)
+..+++-. -.|+.|||+|+++.+..+.-.|.+-|++..+++|.++...|-.++++|+.|-++++|||+.
T Consensus 258 lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee 337 (569)
T KOG0346|consen 258 LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEE 337 (569)
T ss_pred HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcc
Confidence 88888754 5689999999999999999999999999999999999999999999999999999999981
Q ss_pred -------------------------cccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHH
Q 015093 339 -------------------------LARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLAD 393 (413)
Q Consensus 339 -------------------------~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~ 393 (413)
..+|+|+..+..|++++.|.++..|+||+||++|++++|.++.|+.+.+......
T Consensus 338 ~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~ 417 (569)
T KOG0346|consen 338 VKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKES 417 (569)
T ss_pred ccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhH
Confidence 3489999999999999999999999999999999999999999999999888888
Q ss_pred HHHHhccc
Q 015093 394 IQRFYNVV 401 (413)
Q Consensus 394 ~~~~~~~~ 401 (413)
++..+...
T Consensus 418 le~~~~d~ 425 (569)
T KOG0346|consen 418 LESILKDE 425 (569)
T ss_pred HHHHHhhH
Confidence 87777664
No 27
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.2e-50 Score=395.96 Aligned_cols=351 Identities=20% Similarity=0.270 Sum_probs=276.5
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHH
Q 015093 46 GLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIE 125 (413)
Q Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~ 125 (413)
.+++.+.+.+.+.|+..|+++|.++++.+++|+++++.+|||||||++|++|+++.+.... +.++||++|+++|++|+.
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~-~~~aL~l~PtraLa~q~~ 98 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP-RATALYLAPTKALAADQL 98 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC-CcEEEEEcChHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999886543 568999999999999999
Q ss_pred HHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC----CCCCCCccEEEEccchhhhccCcHH
Q 015093 126 KVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ----SLRPDYIRMFVLDEADEMLSRGFKD 201 (413)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~----~~~~~~~~~iIiDE~h~~~~~~~~~ 201 (413)
+.++++. ..++++..+.|+...... ..+...++|+++||+++...+... ...++++++||+||+|.+.+ .+..
T Consensus 99 ~~l~~l~-~~~i~v~~~~Gdt~~~~r-~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~ 175 (742)
T TIGR03817 99 RAVRELT-LRGVRPATYDGDTPTEER-RWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGS 175 (742)
T ss_pred HHHHHhc-cCCeEEEEEeCCCCHHHH-HHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHH
Confidence 9999987 447788888888775443 344556899999999997543221 12267789999999999754 3454
Q ss_pred HHHHHH-------hhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCc------------
Q 015093 202 QIYDIF-------QHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDK------------ 262 (413)
Q Consensus 202 ~~~~~~-------~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 262 (413)
.+..++ ...+.++|++++|||.++.. .....+++.+..+.. .... +.....+....+.
T Consensus 176 ~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~-~~~~~l~g~~~~~i~-~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~ 252 (742)
T TIGR03817 176 HVALVLRRLRRLCARYGASPVFVLASATTADPA-AAASRLIGAPVVAVT-EDGS-PRGARTVALWEPPLTELTGENGAPV 252 (742)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHH-HHHHHHcCCCeEEEC-CCCC-CcCceEEEEecCCcccccccccccc
Confidence 433333 33456789999999998765 456777777755432 2211 1222222221111
Q ss_pred ----cccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhC--------CCeeEeecCCCCHHHHHHHHHHHhcCCC
Q 015093 263 ----EEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSR--------DHTVSATHGDMDQNSRDIIMREFRSGSS 330 (413)
Q Consensus 263 ----~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 330 (413)
...+...+..+++. +.++||||+|++.++.+++.|++. +..+..+||++++.+|.++++.|++|++
T Consensus 253 r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i 330 (742)
T TIGR03817 253 RRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGEL 330 (742)
T ss_pred ccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCc
Confidence 11233444455543 569999999999999999988763 5678899999999999999999999999
Q ss_pred eEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEecc--ccHHHHHHHHHHhccccccC
Q 015093 331 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTR--DDDRMLADIQRFYNVVIEEL 405 (413)
Q Consensus 331 ~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 405 (413)
++||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|+.|.++++..+ .|...+....++++...+..
T Consensus 331 ~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~ 407 (742)
T TIGR03817 331 LGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEAT 407 (742)
T ss_pred eEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccc
Confidence 9999999999999999999999999999999999999999999999999999873 45666777777777766554
No 28
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=4.2e-52 Score=353.93 Aligned_cols=376 Identities=33% Similarity=0.551 Sum_probs=331.2
Q ss_pred ccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhc--------cccc
Q 015093 35 YDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL--------DYES 106 (413)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l--------~~~~ 106 (413)
...+..+|..+.++..+.+.+++.|+..|+|+|.+.++-+++|++.+=.+-||||||+++.+|+.... ....
T Consensus 165 ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~ 244 (610)
T KOG0341|consen 165 IPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARG 244 (610)
T ss_pred CCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccC
Confidence 34567899999999999999999999999999999999999999999999999999999988775432 2345
Q ss_pred CceeEEEEcccHHHHHHHHHHHHHhhccc------CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCC
Q 015093 107 LQCQALVLAPTRELAQQIEKVMRALGDYM------GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP 180 (413)
Q Consensus 107 ~~~~~lvl~P~~~l~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~ 180 (413)
.++-.||+||+++|+.|+++.+..+...+ .++..++.||.....+......+.+|+|+||+.|.+++.++...+
T Consensus 245 EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sL 324 (610)
T KOG0341|consen 245 EGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSL 324 (610)
T ss_pred CCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccH
Confidence 57789999999999999999998876544 467788889999988888888999999999999999999999999
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNV 260 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (413)
+-++++.+|||+++.+.+|...+..++..+....|.+++|||++.....+.+.-+-+|+.+.+.+..+..-++.+....+
T Consensus 325 d~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyV 404 (610)
T KOG0341|consen 325 DACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYV 404 (610)
T ss_pred HHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHH
Confidence 98999999999999999999999999999999999999999999999999999999999998887765543333222222
Q ss_pred CccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccc
Q 015093 261 DKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLA 340 (413)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~ 340 (413)
.. +.++-.+++.+.+. ..++||||..+..++.+.++|--.|..++.+||+-++++|...++.|+.|+.+|||+|++++
T Consensus 405 kq-EaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVAS 482 (610)
T KOG0341|consen 405 KQ-EAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVAS 482 (610)
T ss_pred Hh-hhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchh
Confidence 22 34444455555443 36899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccc-cHHHHHHHHHHhccccccCCcchhcc
Q 015093 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DDRMLADIQRFYNVVIEELPANVADL 412 (413)
Q Consensus 341 ~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
.|+|+|++.|||+++.|.....|.+|+||+||.|+.|.+.+|++.. +...+-++++.|+.-.+.+|..+..|
T Consensus 483 KGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L 555 (610)
T KOG0341|consen 483 KGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAEL 555 (610)
T ss_pred ccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHh
Confidence 9999999999999999999999999999999999999999999965 55678899999999999999888665
No 29
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-50 Score=340.97 Aligned_cols=364 Identities=41% Similarity=0.688 Sum_probs=329.3
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
..+|+.+.|.+++.+.+..++|..|..+|..+++.++.. ++.|.++..|+|||.++.+.++.+....-..+.++.++|
T Consensus 89 ~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaP 168 (477)
T KOG0332|consen 89 AKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAP 168 (477)
T ss_pred cccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCc
Confidence 589999999999999999999999999999999999885 789999999999999999999999888777889999999
Q ss_pred cHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-CCCCCCCccEEEEccchhhh
Q 015093 117 TRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR-QSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~-~~~~~~~~~~iIiDE~h~~~ 195 (413)
+++|+.|+.+.+.+.+...+++..+...+.....- ..-..+|+|+||+.+.+++.. +-+....+.++|+|||+.+.
T Consensus 169 trELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG---~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi 245 (477)
T KOG0332|consen 169 TRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG---NKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMI 245 (477)
T ss_pred hHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC---CcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhh
Confidence 99999999999999999888888777766522111 112358999999999999887 67788889999999999987
Q ss_pred c-cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHH
Q 015093 196 S-RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLY 274 (413)
Q Consensus 196 ~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (413)
+ .+++..-.++.+..|.+.|++++|||.......+......++..+....++.....+++++..+.....++..+..+.
T Consensus 246 ~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~ly 325 (477)
T KOG0332|consen 246 DTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLY 325 (477)
T ss_pred hcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHH
Confidence 5 457777788889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEc
Q 015093 275 ETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 354 (413)
Q Consensus 275 ~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~ 354 (413)
....-+..+|||.+++.|.+++..+.+.|..+..+||++...+|..+++.|+.|..+|||+|+++++|+|++.++.||++
T Consensus 326 g~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNy 405 (477)
T KOG0332|consen 326 GLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNY 405 (477)
T ss_pred hhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEec
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC------ChhHHHhhhcccCCCCCcceEEEEeccccH-HHHHHHHHHhccccccC
Q 015093 355 DLPT------QPENYLHRIGRSGRFGRKGVAINFVTRDDD-RMLADIQRFYNVVIEEL 405 (413)
Q Consensus 355 ~~~~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 405 (413)
+.|. +...|+||+||+||.|+.|.++-++...+. +.+..++++.+.....+
T Consensus 406 dlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~ 463 (477)
T KOG0332|consen 406 DLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRL 463 (477)
T ss_pred CCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceec
Confidence 9884 678999999999999999999999987655 56678888886654443
No 30
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.6e-50 Score=353.01 Aligned_cols=357 Identities=29% Similarity=0.484 Sum_probs=298.0
Q ss_pred cCccCCCCCHHHHHHHHh-CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc------ccCceeEE
Q 015093 40 DSFDSMGLKENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY------ESLQCQAL 112 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~------~~~~~~~l 112 (413)
..|..+|+++.+.+.|+. +++..|+.+|.++|+.++.|+|++|.++||||||++|++|+.+.+.. ...|.-+|
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~AL 215 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYAL 215 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEE
Confidence 578899999999999975 89999999999999999999999999999999999999999988743 34567899
Q ss_pred EEcccHHHHHHHHHHHHHhhcccC-ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-CCCCCCCccEEEEcc
Q 015093 113 VLAPTRELAQQIEKVMRALGDYMG-VKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR-QSLRPDYIRMFVLDE 190 (413)
Q Consensus 113 vl~P~~~l~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~-~~~~~~~~~~iIiDE 190 (413)
|++||++|+.|.++.++++...+. +..+.+.||.....+...+..+++|+|+||+.|.+++.+ ..+.++.++.+|+||
T Consensus 216 VivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDE 295 (708)
T KOG0348|consen 216 VIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDE 295 (708)
T ss_pred EEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecc
Confidence 999999999999999999887653 345677788888888888888999999999999999987 456778899999999
Q ss_pred chhhhccCcHHHHHHHHhhCCC-------------CceEEEEeeeCChhHHHHHHHhcCCCEEEEecCC-----------
Q 015093 191 ADEMLSRGFKDQIYDIFQHLPG-------------KIQVGVFSATMPPEALEITRKFMNKPVRILVKRD----------- 246 (413)
Q Consensus 191 ~h~~~~~~~~~~~~~~~~~~~~-------------~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~----------- 246 (413)
+|++.+.+|...+..+++.... ..+.+++|||+...+..+...-+.+|..+.....
T Consensus 296 aDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~ 375 (708)
T KOG0348|consen 296 ADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAV 375 (708)
T ss_pred hhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhh
Confidence 9999999999888888777621 3567899999998888888888888776661110
Q ss_pred --------------ccccCCceEEEEEeCccccHHHHHHHH----HHhcCCCcEEEEEcCcccHHHHHHHHhhC------
Q 015093 247 --------------ELTLEGIKQFHVNVDKEEWKLDTLCDL----YETLAITQSVIFVNTRRKVDWLTDQMRSR------ 302 (413)
Q Consensus 247 --------------~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~lIf~~~~~~a~~l~~~l~~~------ 302 (413)
...++.+.+.+..++.. ..+-.|..+ .+.....+++||..+.+.++.-+..|.+.
T Consensus 376 ~ev~~~~~~~~l~~~~iPeqL~qry~vVPpK-LRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e 454 (708)
T KOG0348|consen 376 QEVDDGPAGDKLDSFAIPEQLLQRYTVVPPK-LRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLE 454 (708)
T ss_pred hhcCCcccccccccccCcHHhhhceEecCCc-hhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccc
Confidence 11223344444444442 233333333 34446679999999999999988888642
Q ss_pred ----------------CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhh
Q 015093 303 ----------------DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHR 366 (413)
Q Consensus 303 ----------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~ 366 (413)
+.+...+||+|.+.+|..+++.|...+..||+||+++++|+|+|.+.+||.+++|.++.+|++|
T Consensus 455 ~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHR 534 (708)
T KOG0348|consen 455 GSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHR 534 (708)
T ss_pred cccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCcceEEEEeccccHHHHHHHHHH
Q 015093 367 IGRSGRFGRKGVAINFVTRDDDRMLADIQRF 397 (413)
Q Consensus 367 ~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 397 (413)
+||+.|.|..|.+++|..+.+.++++-+..+
T Consensus 535 vGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 535 VGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred hhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 9999999999999999999999866655444
No 31
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-49 Score=379.12 Aligned_cols=377 Identities=34% Similarity=0.561 Sum_probs=349.7
Q ss_pred cccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc-----ccCcee
Q 015093 36 DEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-----ESLQCQ 110 (413)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~-----~~~~~~ 110 (413)
..+..+|.+.|++..++..++++|+..|+++|..||+++.+|+++|.++.||||||++|++|++..... ...++.
T Consensus 361 pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi 440 (997)
T KOG0334|consen 361 PKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPI 440 (997)
T ss_pred CcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCce
Confidence 456789999999999999999999999999999999999999999999999999999999999866532 234788
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCcc---EEE
Q 015093 111 ALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIR---MFV 187 (413)
Q Consensus 111 ~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~---~iI 187 (413)
++|++||++|+.|+.++++.|...+++.+...+|+.........+..++.|+|+||+.+.+.+-.....+.+++ ++|
T Consensus 441 ~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv 520 (997)
T KOG0334|consen 441 ALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLV 520 (997)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceee
Confidence 99999999999999999999999999999999999999999888888999999999999998877666666655 999
Q ss_pred EccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHH
Q 015093 188 LDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKL 267 (413)
Q Consensus 188 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (413)
+||++++.+.+|......++..+++..|.+++|||.+..+..+....+..|+.+.+........++.+..........+.
T Consensus 521 ~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf 600 (997)
T KOG0334|consen 521 LDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKF 600 (997)
T ss_pred echhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHH
Confidence 99999999999998888899999999999999999999999999999999999998888888888888888888778899
Q ss_pred HHHHHHHHhc-CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCC
Q 015093 268 DTLCDLYETL-AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQ 346 (413)
Q Consensus 268 ~~l~~~~~~~-~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 346 (413)
..|..++... ..++++|||...+.|..+.+.|.+.|+.+..+||+-++.+|..+++.|+++.+.+|++|+.+++|+|++
T Consensus 601 ~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~ 680 (997)
T KOG0334|consen 601 LKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVK 680 (997)
T ss_pred HHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccc
Confidence 9999988765 568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhcc
Q 015093 347 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADL 412 (413)
Q Consensus 347 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
.+..||+++.|....+|.+|.||+||+|++|.|++|+.+.+..+...+.++|...-+++|..+..|
T Consensus 681 ~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l 746 (997)
T KOG0334|consen 681 ELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQAL 746 (997)
T ss_pred cceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999776554
No 32
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.5e-47 Score=373.94 Aligned_cols=342 Identities=19% Similarity=0.249 Sum_probs=261.9
Q ss_pred cCcc--CCCCCHHHHHHHHh-CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 40 DSFD--SMGLKENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 40 ~~~~--~~~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
+.|. .+++...+...++. +|+..+++.|.+++++++.|+++++.+|||+|||++|.+|++.. .+.+|||+|
T Consensus 435 ~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISP 508 (1195)
T PLN03137 435 KKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISP 508 (1195)
T ss_pred ccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeC
Confidence 3455 35666777666664 79999999999999999999999999999999999999999854 247999999
Q ss_pred cHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHh------cCCcEEEeChHHHHH--HHHcC---CCCCCCccE
Q 015093 117 TRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS------AGVHVVVGTPGRVFD--MLRRQ---SLRPDYIRM 185 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Iii~T~~~l~~--~~~~~---~~~~~~~~~ 185 (413)
+++|+.++...+... ++....+.++.........+. ...+|+++||+++.. .+... ......+++
T Consensus 509 LiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~Lsl 584 (1195)
T PLN03137 509 LVSLIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLAR 584 (1195)
T ss_pred HHHHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccce
Confidence 999998766666553 788888888876555443332 467999999999852 11111 111234789
Q ss_pred EEEccchhhhccC--cHHHHHHH--HhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeC
Q 015093 186 FVLDEADEMLSRG--FKDQIYDI--FQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVD 261 (413)
Q Consensus 186 iIiDE~h~~~~~~--~~~~~~~~--~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (413)
|||||||.+..++ |...+..+ +....+..+++++|||+++.....+...++....... ...+..+++... ...
T Consensus 585 IVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vf-r~Sf~RpNL~y~--Vv~ 661 (1195)
T PLN03137 585 FVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVF-RQSFNRPNLWYS--VVP 661 (1195)
T ss_pred eccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEe-ecccCccceEEE--Eec
Confidence 9999999998775 55444432 3333346789999999998777655544443222211 122333343322 222
Q ss_pred ccccHHHHHHHHHHhc-CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccc
Q 015093 262 KEEWKLDTLCDLYETL-AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLA 340 (413)
Q Consensus 262 ~~~~~~~~l~~~~~~~-~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~ 340 (413)
........+..++... ..+.+||||.+++.++.+++.|.+.|+.+..|||+|++.+|..+++.|.+|+.+|||||.+++
T Consensus 662 k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFG 741 (1195)
T PLN03137 662 KTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFG 741 (1195)
T ss_pred cchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhh
Confidence 2223345566666544 356899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHH
Q 015093 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 341 ~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 394 (413)
+|||+|++++||+++.|.|...|.|++||+||.|.+|.|++||...|......+
T Consensus 742 MGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~l 795 (1195)
T PLN03137 742 MGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHM 795 (1195)
T ss_pred cCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988776554444
No 33
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.3e-48 Score=365.14 Aligned_cols=323 Identities=20% Similarity=0.287 Sum_probs=250.8
Q ss_pred HhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhccc
Q 015093 56 YAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM 135 (413)
Q Consensus 56 ~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~ 135 (413)
+.+|+..|+|+|.++++++++|+++++.+|||+|||++|++|++.. +..++|++|+++|+.|+.+.++.+
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~~~~lVi~P~~~L~~dq~~~l~~~---- 74 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------DGITLVISPLISLMEDQVLQLKAS---- 74 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------CCcEEEEecHHHHHHHHHHHHHHc----
Confidence 4579999999999999999999999999999999999999998753 347999999999999999888764
Q ss_pred CceEEEEECCcchHHHHH----HHhcCCcEEEeChHHHHHHHH-cCCC-CCCCccEEEEccchhhhccC--cHHHHH---
Q 015093 136 GVKVHACVGGTSVREDQR----ILSAGVHVVVGTPGRVFDMLR-RQSL-RPDYIRMFVLDEADEMLSRG--FKDQIY--- 204 (413)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~----~~~~~~~Iii~T~~~l~~~~~-~~~~-~~~~~~~iIiDE~h~~~~~~--~~~~~~--- 204 (413)
++....+.++........ ......+|+++||+.+..... ...+ ...++++||+||||.+..++ +...+.
T Consensus 75 gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~ 154 (470)
T TIGR00614 75 GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALG 154 (470)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHH
Confidence 667777777765443222 234467999999998753220 0111 34568999999999987654 333333
Q ss_pred HHHhhCCCCceEEEEeeeCChhHHHHHHHhcC--CCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHH-hcCCCc
Q 015093 205 DIFQHLPGKIQVGVFSATMPPEALEITRKFMN--KPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYE-TLAITQ 281 (413)
Q Consensus 205 ~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~ 281 (413)
.+...+ ++.+++++|||+++.........++ .+..+.. ....+++..... .........+..++. ...++.
T Consensus 155 ~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~---s~~r~nl~~~v~--~~~~~~~~~l~~~l~~~~~~~~ 228 (470)
T TIGR00614 155 SLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCT---SFDRPNLYYEVR--RKTPKILEDLLRFIRKEFKGKS 228 (470)
T ss_pred HHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC---CCCCCCcEEEEE--eCCccHHHHHHHHHHHhcCCCc
Confidence 334444 4678999999999876555444433 2322221 222333332222 222234556666665 445556
Q ss_pred EEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChh
Q 015093 282 SVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPE 361 (413)
Q Consensus 282 ~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~ 361 (413)
+||||++++.++.+++.|++.++.+..+||++++.+|.++++.|.+|+.+|||||+++++|+|+|++++||+++.|.|..
T Consensus 229 ~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~ 308 (470)
T TIGR00614 229 GIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSME 308 (470)
T ss_pred eEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccCCCCCcceEEEEeccccHHHHHHH
Q 015093 362 NYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 362 ~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 394 (413)
.|.|++||+||.|.+|.|++++++.|...++.+
T Consensus 309 ~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~ 341 (470)
T TIGR00614 309 SYYQESGRAGRDGLPSECHLFYAPADINRLRRL 341 (470)
T ss_pred HHHhhhcCcCCCCCCceEEEEechhHHHHHHHH
Confidence 999999999999999999999998877655554
No 34
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-48 Score=346.34 Aligned_cols=370 Identities=28% Similarity=0.412 Sum_probs=295.2
Q ss_pred ccccccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCC-CcEEEeCCCCCchhHHHHHHHHHhcccc----
Q 015093 31 FFVSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYE---- 105 (413)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~i~~~l~~~---- 105 (413)
...+-......|.++.++..+..+|...||..|+++|..+++++..| .+++=.|.||||||++|-+|+++.+...
T Consensus 172 ~~~~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s 251 (731)
T KOG0347|consen 172 IDDSSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDS 251 (731)
T ss_pred cccccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchH
Confidence 33444445678999999999999999999999999999999999998 6899999999999999999999854221
Q ss_pred ---------cCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC
Q 015093 106 ---------SLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ 176 (413)
Q Consensus 106 ---------~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~ 176 (413)
...+-.||++||++|+.|..+-+..++...++++..++||.....+.+++...++|+|+||+.|..++...
T Consensus 252 ~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~ 331 (731)
T KOG0347|consen 252 QELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEED 331 (731)
T ss_pred hhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhh
Confidence 11223999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred CC---CCCCccEEEEccchhhhccCcHHHHHHHHhhCC-----CCceEEEEeeeCChhHH--------------------
Q 015093 177 SL---RPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLP-----GKIQVGVFSATMPPEAL-------------------- 228 (413)
Q Consensus 177 ~~---~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~-----~~~~~i~lSAT~~~~~~-------------------- 228 (413)
.. .+..++++|+||++++...++...+..++..+. ...|.+.+|||..-...
T Consensus 332 n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~ki 411 (731)
T KOG0347|consen 332 NTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKI 411 (731)
T ss_pred hhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHH
Confidence 54 345578999999999999988877777776664 35689999999852111
Q ss_pred -HHHH--HhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCe
Q 015093 229 -EITR--KFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHT 305 (413)
Q Consensus 229 -~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~ 305 (413)
.+.+ .+.+.|..+...+.......+......++.. .+--.+.-++.. ..|++|||||+++.+..++-.|+..+++
T Consensus 412 q~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~-eKD~ylyYfl~r-yPGrTlVF~NsId~vKRLt~~L~~L~i~ 489 (731)
T KOG0347|consen 412 QHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPL-EKDLYLYYFLTR-YPGRTLVFCNSIDCVKRLTVLLNNLDIP 489 (731)
T ss_pred HHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCcc-ccceeEEEEEee-cCCceEEEechHHHHHHHHHHHhhcCCC
Confidence 0111 1122333333332222211111111111110 000001111111 3479999999999999999999999999
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEecc
Q 015093 306 VSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTR 385 (413)
Q Consensus 306 ~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 385 (413)
...+|+.|.+.+|-+.++.|++....|||||+++++|+|+|++.|||+|..|.+...|+||.||+.|++..|..+.++.+
T Consensus 490 p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P 569 (731)
T KOG0347|consen 490 PLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGP 569 (731)
T ss_pred CchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhcccc
Q 015093 386 DDDRMLADIQRFYNVVI 402 (413)
Q Consensus 386 ~~~~~~~~~~~~~~~~~ 402 (413)
.+...+..+..-|++..
T Consensus 570 ~e~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 570 QEVGPLKKLCKTLKKKE 586 (731)
T ss_pred HHhHHHHHHHHHHhhcc
Confidence 99888888888777643
No 35
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.7e-46 Score=362.26 Aligned_cols=330 Identities=20% Similarity=0.278 Sum_probs=255.3
Q ss_pred CCCHHHHHHHHh-CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHH
Q 015093 46 GLKENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQI 124 (413)
Q Consensus 46 ~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~ 124 (413)
+.++...+.+++ +|+..|+++|.+++++++.|+++++.+|||+|||++|++|++.. ...++|++|+++|+.|+
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dq 81 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQ 81 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHH
Confidence 344455556654 79999999999999999999999999999999999999988753 23799999999999999
Q ss_pred HHHHHHhhcccCceEEEEECCcchHHHHH----HHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC--
Q 015093 125 EKVMRALGDYMGVKVHACVGGTSVREDQR----ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-- 198 (413)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-- 198 (413)
.+.++.. ++....+.++........ ......+++++||+.+........+....+++||+||||.+..++
T Consensus 82 v~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~ 157 (607)
T PRK11057 82 VDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHD 157 (607)
T ss_pred HHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCc
Confidence 9888875 566666666655443322 223457899999999874222222333458999999999987654
Q ss_pred cH---HHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcC--CCEEEEecCCccccCCceEEEEEeCccccHHHHHHHH
Q 015093 199 FK---DQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMN--KPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDL 273 (413)
Q Consensus 199 ~~---~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (413)
+. ..+..+...++ +.+++++|||+++.........+. .+.... .....+++..... ........+..+
T Consensus 158 fr~~y~~L~~l~~~~p-~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~---~~~~r~nl~~~v~---~~~~~~~~l~~~ 230 (607)
T PRK11057 158 FRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQI---SSFDRPNIRYTLV---EKFKPLDQLMRY 230 (607)
T ss_pred ccHHHHHHHHHHHhCC-CCcEEEEecCCChhHHHHHHHHhCCCCeEEEE---CCCCCCcceeeee---eccchHHHHHHH
Confidence 33 23444444554 678999999998766544333332 332222 1222233322211 123345667777
Q ss_pred HHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE
Q 015093 274 YETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 353 (413)
Q Consensus 274 ~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~ 353 (413)
+....++++||||+++++++.+++.|++.++.+..+|+++++.+|.++++.|.+|+.+|||||+++++|+|+|++++||+
T Consensus 231 l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~ 310 (607)
T PRK11057 231 VQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH 310 (607)
T ss_pred HHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE
Confidence 77777789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHH
Q 015093 354 YDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLA 392 (413)
Q Consensus 354 ~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 392 (413)
++.|.|...|.|++||+||.|.+|.|++++++.|.....
T Consensus 311 ~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~ 349 (607)
T PRK11057 311 FDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR 349 (607)
T ss_pred eCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHH
Confidence 999999999999999999999999999999988755443
No 36
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=2e-47 Score=344.53 Aligned_cols=349 Identities=34% Similarity=0.576 Sum_probs=324.8
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
...|+.+-+..++...|+.++|..|+++|..||++++.+-+.||++..|+|||++|...+++.+........++|++||+
T Consensus 24 ~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTR 103 (980)
T KOG4284|consen 24 TPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTR 103 (980)
T ss_pred CCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecch
Confidence 47788889999999999999999999999999999999999999999999999999988888888887788999999999
Q ss_pred HHHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc-
Q 015093 119 ELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS- 196 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~- 196 (413)
+++.|..+.+..++..+ +.++.++.||+....+...++ .+.|+|+||+.+.++++...++.+.++++|+|||+.+.+
T Consensus 104 EiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t 182 (980)
T KOG4284|consen 104 EIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDT 182 (980)
T ss_pred hhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhch
Confidence 99999999999998765 889999999998777665554 478999999999999999999999999999999999987
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCcc-------ccHHHH
Q 015093 197 RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKE-------EWKLDT 269 (413)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 269 (413)
..+...+..++..+|...|++++|||.+.++...+..++.+|..+........+-+++++++..... ..++..
T Consensus 183 ~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~ 262 (980)
T KOG4284|consen 183 ESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQK 262 (980)
T ss_pred hhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999888888888999998877653 347788
Q ss_pred HHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCC
Q 015093 270 LCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 349 (413)
Q Consensus 270 l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~ 349 (413)
|.++++..+....||||+....|+-++.+|+..|+++-++.|.|++.+|..+++.++.-..+|||+|+.-++|||-+.++
T Consensus 263 L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vN 342 (980)
T KOG4284|consen 263 LTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVN 342 (980)
T ss_pred HHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccc
Confidence 88888998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccH
Q 015093 350 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388 (413)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 388 (413)
.||+.++|.+...|.|||||+||.|..|.+++|+.....
T Consensus 343 LVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 343 LVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred eEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999999999999999987655
No 37
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-47 Score=329.38 Aligned_cols=364 Identities=32% Similarity=0.517 Sum_probs=335.9
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc-cCceeEEEEccc
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-SLQCQALVLAPT 117 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-~~~~~~lvl~P~ 117 (413)
...|+.++|+....+++.+.||..|+|+|++.++.++++++++-.+-||||||.++++|+++.+... +.+.+++++.||
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 4789999999999999999999999999999999999999999999999999999999999988544 356799999999
Q ss_pred HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc
Q 015093 118 RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR 197 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~ 197 (413)
++|+.|..+..+.++...+++..++.|+.....+...+...+|||++||+.+.....+-.+.++.+.+||+||++.++..
T Consensus 100 reLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem 179 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM 179 (529)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhh
Confidence 99999999999999999999999999999999999999888999999999999888777788999999999999999999
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc
Q 015093 198 GFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL 277 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (413)
+|...+.+++.+++...|.+++|||.+..+.++.+..+.+|..+....+....+..+..+..+.. ..+...|..++...
T Consensus 180 gfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~-a~K~aaLl~il~~~ 258 (529)
T KOG0337|consen 180 GFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRK-AEKEAALLSILGGR 258 (529)
T ss_pred hhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeecc-HHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999988877766666666666666655 56777777777665
Q ss_pred -CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC
Q 015093 278 -AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 278 -~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 356 (413)
..+.++||+++..+++.+...|...|+.+..++|.+++..|..-+..|..++..++|.|+.+.+|+|+|-.+.||+++.
T Consensus 259 ~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~ 338 (529)
T KOG0337|consen 259 IKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDF 338 (529)
T ss_pred ccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccC
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccc
Q 015093 357 PTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIE 403 (413)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (413)
|.+...|.+|+||+.|+|+.|.+|.++.+.+..++-++.-+|...+.
T Consensus 339 p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~ 385 (529)
T KOG0337|consen 339 PPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLI 385 (529)
T ss_pred CCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCcee
Confidence 99999999999999999999999999999999999999999988543
No 38
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=4.2e-46 Score=370.02 Aligned_cols=347 Identities=22% Similarity=0.301 Sum_probs=261.8
Q ss_pred CccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhh-hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
.|+++++++.+.+.+.+.|+.+|+|+|.++++. +.+|+++++++|||||||+++.++++..+.. +.+++|++|+++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~kal~i~P~ra 78 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GGKALYIVPLRA 78 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CCcEEEEeChHH
Confidence 578889999999999999999999999999998 7889999999999999999999999988753 448999999999
Q ss_pred HHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCc
Q 015093 120 LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGF 199 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~ 199 (413)
|+.|.++.++++.. .+.++..++|+...... .....+|+|+||+++..++.+....+.+++++|+||+|.+.+..+
T Consensus 79 La~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~r 154 (737)
T PRK02362 79 LASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANR 154 (737)
T ss_pred HHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcc
Confidence 99999999998753 48889999988754332 124579999999999988887655567899999999999887777
Q ss_pred HHHHHHHHhhC---CCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEE--------------EEEeCc
Q 015093 200 KDQIYDIFQHL---PGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQF--------------HVNVDK 262 (413)
Q Consensus 200 ~~~~~~~~~~~---~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 262 (413)
+..+..++.++ ....|++++|||+++ ..++..++....+. . ...+..+... ......
T Consensus 155 g~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~wl~~~~~~--~---~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~ 228 (737)
T PRK02362 155 GPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELADWLDAELVD--S---EWRPIDLREGVFYGGAIHFDDSQREVEVPS 228 (737)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHHHhCCCccc--C---CCCCCCCeeeEecCCeeccccccccCCCcc
Confidence 76666554443 467899999999974 33444433222110 0 0000000000 000001
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhC------------------------------------CCee
Q 015093 263 EEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSR------------------------------------DHTV 306 (413)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~------------------------------------~~~~ 306 (413)
.......+...+. .++++||||++++.|+.+++.|... ...+
T Consensus 229 ~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gv 306 (737)
T PRK02362 229 KDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGA 306 (737)
T ss_pred chHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCE
Confidence 1122223333332 4579999999999999988888642 1368
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE----cC-----CCCChhHHHhhhcccCCCCCc-
Q 015093 307 SATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD-----LPTQPENYLHRIGRSGRFGRK- 376 (413)
Q Consensus 307 ~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~-----~~~s~~~~~Q~~GR~~R~g~~- 376 (413)
..+|+++++.+|..+++.|++|.++|||||+++++|+|+|..++||. ++ .|.+..+|.||+||+||.|.+
T Consensus 307 a~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~ 386 (737)
T PRK02362 307 AFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDP 386 (737)
T ss_pred EeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCC
Confidence 89999999999999999999999999999999999999999999886 43 578999999999999999865
Q ss_pred -ceEEEEeccccHHHHHHHHHHhccccc
Q 015093 377 -GVAINFVTRDDDRMLADIQRFYNVVIE 403 (413)
Q Consensus 377 -g~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (413)
|.+++++...+. ...-+.+|+.....
T Consensus 387 ~G~~ii~~~~~~~-~~~~~~~~l~~~~~ 413 (737)
T PRK02362 387 YGEAVLLAKSYDE-LDELFERYIWADPE 413 (737)
T ss_pred CceEEEEecCchh-HHHHHHHHHhCCCC
Confidence 899998865432 22223455543333
No 39
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.4e-45 Score=358.71 Aligned_cols=321 Identities=22% Similarity=0.324 Sum_probs=254.3
Q ss_pred hCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 57 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
.+|+..++++|.+++++++.|+++++++|||+|||++|++|++.. ...++|++|+++|+.|+.+.++.+ +
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~l~~~----g 77 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQLRAA----G 77 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHHc----C
Confidence 489999999999999999999999999999999999999888743 237899999999999999988875 6
Q ss_pred ceEEEEECCcchHHHHH----HHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC--cHHH---HHHHH
Q 015093 137 VKVHACVGGTSVREDQR----ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG--FKDQ---IYDIF 207 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~----~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~---~~~~~ 207 (413)
+.+..+.++........ ......+|+++||+.+.............+++||+||||.+..++ +... +..+.
T Consensus 78 i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~ 157 (591)
T TIGR01389 78 VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLA 157 (591)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHH
Confidence 77778887766544332 234567999999999865333333344568999999999987654 4333 33445
Q ss_pred hhCCCCceEEEEeeeCChhHHHHHHHhcCCC-EEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEE
Q 015093 208 QHLPGKIQVGVFSATMPPEALEITRKFMNKP-VRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFV 286 (413)
Q Consensus 208 ~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~ 286 (413)
..++. .+++++|||+++.....+...++.. ..... .....+++..... ....+...+..++....++++||||
T Consensus 158 ~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~--~~~~r~nl~~~v~---~~~~~~~~l~~~l~~~~~~~~IIf~ 231 (591)
T TIGR01389 158 ERFPQ-VPRIALTATADAETRQDIRELLRLADANEFI--TSFDRPNLRFSVV---KKNNKQKFLLDYLKKHRGQSGIIYA 231 (591)
T ss_pred HhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe--cCCCCCCcEEEEE---eCCCHHHHHHHHHHhcCCCCEEEEE
Confidence 55554 4599999999887766555554322 11111 1222333332222 2234566777778777778999999
Q ss_pred cCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhh
Q 015093 287 NTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHR 366 (413)
Q Consensus 287 ~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~ 366 (413)
++++.++.+++.|...++.+..+|++++..+|..+++.|.+|+.+|||||+++++|+|+|+++.||+++.|.|...|.|+
T Consensus 232 ~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~ 311 (591)
T TIGR01389 232 SSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQE 311 (591)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCcceEEEEeccccHHHHHH
Q 015093 367 IGRSGRFGRKGVAINFVTRDDDRMLAD 393 (413)
Q Consensus 367 ~GR~~R~g~~g~~~~~~~~~~~~~~~~ 393 (413)
+||+||.|.++.|+++++..|......
T Consensus 312 ~GRaGR~G~~~~~il~~~~~d~~~~~~ 338 (591)
T TIGR01389 312 AGRAGRDGLPAEAILLYSPADIALLKR 338 (591)
T ss_pred hccccCCCCCceEEEecCHHHHHHHHH
Confidence 999999999999999998877554443
No 40
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-46 Score=325.57 Aligned_cols=361 Identities=27% Similarity=0.426 Sum_probs=289.5
Q ss_pred ccCccCCCCCHHHHHH----------HHhCCCCCCcHHHHhhhhhhhC---------CCcEEEeCCCCCchhHHHHHHHH
Q 015093 39 YDSFDSMGLKENLLRG----------IYAYGFEKPSAIQQRGIVPFCK---------GLDVIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~----------l~~~~~~~~~~~Q~~~~~~~~~---------~~~~lv~~~tGsGKT~~~~~~i~ 99 (413)
...|+.++.++..... +.++++..+.|+|..+++.++. ++|+.|.+|||||||++|.+||.
T Consensus 126 lq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIV 205 (620)
T KOG0350|consen 126 LQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIV 205 (620)
T ss_pred eeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHH
Confidence 3566677777665544 8899999999999999988743 57899999999999999999999
Q ss_pred Hhccccc-CceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhc-CC----cEEEeChHHHHHHH
Q 015093 100 QQLDYES-LQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSA-GV----HVVVGTPGRVFDML 173 (413)
Q Consensus 100 ~~l~~~~-~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~Iii~T~~~l~~~~ 173 (413)
+.+.... ..-+++|++|++.|+.|.++.+.++....++.|..+.|......+...+.. .. +|+|+||++|.+++
T Consensus 206 Q~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl 285 (620)
T KOG0350|consen 206 QLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHL 285 (620)
T ss_pred HHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhc
Confidence 9987663 346899999999999999999999999999999999998887776655543 33 89999999999999
Q ss_pred H-cCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCC----------------------------------CceEEE
Q 015093 174 R-RQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPG----------------------------------KIQVGV 218 (413)
Q Consensus 174 ~-~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~i~ 218 (413)
. ..++.+.+++++|+|||+++.+..|...+..+...+.. ....+.
T Consensus 286 ~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~ 365 (620)
T KOG0350|consen 286 NNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLV 365 (620)
T ss_pred cCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhh
Confidence 8 57889999999999999999887666544444333211 122556
Q ss_pred EeeeCChhHHHHHHHhcCCCEEEEec----CCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHH
Q 015093 219 FSATMPPEALEITRKFMNKPVRILVK----RDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDW 294 (413)
Q Consensus 219 lSAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~ 294 (413)
+|||+...-..+...-++.|-..... .....++.+.+....... ..+.-.+..++......++|+|+++...+..
T Consensus 366 ~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~-~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~R 444 (620)
T KOG0350|consen 366 FSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEP-KFKPLAVYALITSNKLNRTLCFVNSVSSANR 444 (620)
T ss_pred cchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeeccc-ccchHhHHHHHHHhhcceEEEEecchHHHHH
Confidence 77777655555555555555332222 122233444444443333 4566778888888888999999999999999
Q ss_pred HHHHHh----hCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhccc
Q 015093 295 LTDQMR----SRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 370 (413)
Q Consensus 295 l~~~l~----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~ 370 (413)
++..|+ ..+.++..+.|.++...|.+.++.|..|.+++|||++++++|+|+.+++.||++++|.+...|+||+||+
T Consensus 445 l~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRT 524 (620)
T KOG0350|consen 445 LAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRT 524 (620)
T ss_pred HHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhccc
Confidence 999887 3356677799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEeccccHHHHHHHHHHhcc
Q 015093 371 GRFGRKGVAINFVTRDDDRMLADIQRFYNV 400 (413)
Q Consensus 371 ~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 400 (413)
+|+|+.|.|+.+.+..+...+..+-+....
T Consensus 525 ARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 525 ARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred ccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 999999999999999888777666554443
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2.8e-45 Score=367.12 Aligned_cols=335 Identities=21% Similarity=0.300 Sum_probs=247.9
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc------cCceeEEEEcccHHH
Q 015093 47 LKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE------SLQCQALVLAPTREL 120 (413)
Q Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~------~~~~~~lvl~P~~~l 120 (413)
+++.+.+.+.+ ++..|+++|.++++.+.+|+++++++|||||||+++++++++.+... ..+.+++|++|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 67778787766 68899999999999999999999999999999999999999877532 234579999999999
Q ss_pred HHHHHHHHHH-------hh----ccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCC--CCCCccEE
Q 015093 121 AQQIEKVMRA-------LG----DYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL--RPDYIRMF 186 (413)
Q Consensus 121 ~~q~~~~~~~-------~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~--~~~~~~~i 186 (413)
++|+++.+.. +. ... ++++...+|+.......+.....++|+|+||++|..++....+ .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876553 22 222 6788899999887777777777889999999999877755433 35678999
Q ss_pred EEccchhhhccCcHHHH----HHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCC-------CEEEEecCCccccCCceE
Q 015093 187 VLDEADEMLSRGFKDQI----YDIFQHLPGKIQVGVFSATMPPEALEITRKFMNK-------PVRILVKRDELTLEGIKQ 255 (413)
Q Consensus 187 IiDE~h~~~~~~~~~~~----~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 255 (413)
|+||+|.+.+..++..+ ..+....+...+++++|||+++. ......+.+. +..+. .........+..
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv-~~~~~k~~~i~v 254 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIV-DARFVKPFDIKV 254 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEE-ccCCCccceEEE
Confidence 99999998866555433 33333444578999999999752 3333333221 11111 111101001110
Q ss_pred EEEE----eCcccc----HHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhC------CCeeEeecCCCCHHHHHHH
Q 015093 256 FHVN----VDKEEW----KLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSR------DHTVSATHGDMDQNSRDII 321 (413)
Q Consensus 256 ~~~~----~~~~~~----~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~ 321 (413)
.... ...... ....+..+++ ..+++||||++++.|+.++..|++. +..+..+||++++.+|..+
T Consensus 255 ~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~v 332 (876)
T PRK13767 255 ISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEV 332 (876)
T ss_pred eccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHH
Confidence 0000 000111 1222333333 3468999999999999999999873 4679999999999999999
Q ss_pred HHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCC-CCcceEEEEeccc
Q 015093 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF-GRKGVAINFVTRD 386 (413)
Q Consensus 322 ~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~~~~~ 386 (413)
++.|++|+.++||||+++++|+|+|++++||+++.|.|...|+||+||+||. |..+.++++....
T Consensus 333 e~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 333 EEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDR 398 (876)
T ss_pred HHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCc
Confidence 9999999999999999999999999999999999999999999999999987 4445555555443
No 42
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.6e-46 Score=332.69 Aligned_cols=364 Identities=32% Similarity=0.459 Sum_probs=317.9
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc-----cCceeEEEEcccHHH
Q 015093 46 GLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-----SLQCQALVLAPTREL 120 (413)
Q Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-----~~~~~~lvl~P~~~l 120 (413)
..++.++..+...+|..|++.|..+++.++.+++++.++|||||||++|++|++..+... ..+.+++|+.|+++|
T Consensus 142 ~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreL 221 (593)
T KOG0344|consen 142 SMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTREL 221 (593)
T ss_pred hhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHH
Confidence 457888999999999999999999999999999999999999999999999999888543 346789999999999
Q ss_pred HHHHHHHHHHhh--cccCceEEEEECCcchHHHH-HHHhcCCcEEEeChHHHHHHHHcCC--CCCCCccEEEEccchhhh
Q 015093 121 AQQIEKVMRALG--DYMGVKVHACVGGTSVREDQ-RILSAGVHVVVGTPGRVFDMLRRQS--LRPDYIRMFVLDEADEML 195 (413)
Q Consensus 121 ~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Iii~T~~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~ 195 (413)
+.|.++++.++. ...+................ ......++|+++||..+...+.... ..+..+..+|+||++.+.
T Consensus 222 a~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lf 301 (593)
T KOG0344|consen 222 AAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLF 301 (593)
T ss_pred HHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhh
Confidence 999999999998 65665555554432221111 1112357899999999998887765 678889999999999998
Q ss_pred cc-CcHHHHHHHHhhCCC-CceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHH
Q 015093 196 SR-GFKDQIYDIFQHLPG-KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDL 273 (413)
Q Consensus 196 ~~-~~~~~~~~~~~~~~~-~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (413)
+. .+..++..++..+.. ...+-++|||.+...+++++........+.+...+.....+.+....+.....+.-.+.++
T Consensus 302 e~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~ 381 (593)
T KOG0344|consen 302 EPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQL 381 (593)
T ss_pred ChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHH
Confidence 88 788888888877754 5677889999999999999999999999888888777777888878888888899999999
Q ss_pred HHhcCCCcEEEEEcCcccHHHHHHHH-hhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEE
Q 015093 274 YETLAITQSVIFVNTRRKVDWLTDQM-RSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 (413)
Q Consensus 274 ~~~~~~~~~lIf~~~~~~a~~l~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi 352 (413)
+...-..+++||+.+.+.|.+++..| .-.++++.++||..++.+|++.++.|+.|++.+||||+.+++|+|+.+++.||
T Consensus 382 v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VI 461 (593)
T KOG0344|consen 382 VASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVI 461 (593)
T ss_pred HhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEE
Confidence 99998889999999999999999999 56688999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcch
Q 015093 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANV 409 (413)
Q Consensus 353 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (413)
++|.|.+..+|++|+||+||+|+.|.+++||+..+...++.+.+.....=-++|++.
T Consensus 462 nyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe~~ 518 (593)
T KOG0344|consen 462 NYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPEKI 518 (593)
T ss_pred ecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcchHHH
Confidence 999999999999999999999999999999999999999999888777666666554
No 43
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=6.2e-45 Score=348.70 Aligned_cols=359 Identities=21% Similarity=0.270 Sum_probs=282.5
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc-----cCceeEEEEcccHHHH
Q 015093 47 LKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-----SLQCQALVLAPTRELA 121 (413)
Q Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-----~~~~~~lvl~P~~~l~ 121 (413)
+++.+.+.++.. |.+|++.|..|++.+.+|+++||.+|||||||+++++|++..+... ..+-.+|||+|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 689999999988 9999999999999999999999999999999999999999988766 2346799999999999
Q ss_pred HHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCC--CCCCccEEEEccchhhhccCc
Q 015093 122 QQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL--RPDYIRMFVLDEADEMLSRGF 199 (413)
Q Consensus 122 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~--~~~~~~~iIiDE~h~~~~~~~ 199 (413)
+++.+.+..++...|+.+.+-+|++......+...+.++|+++||++|.-++....+ .+.++++||+||+|.+.....
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 999999999999999999999999999888888889999999999999877755432 367799999999999886655
Q ss_pred HHHH----HHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCC--EEEEecCCccccCCceEEEEEeC------ccccHH
Q 015093 200 KDQI----YDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKP--VRILVKRDELTLEGIKQFHVNVD------KEEWKL 267 (413)
Q Consensus 200 ~~~~----~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 267 (413)
+.++ .++....+ +.|.|++|||..+. ....+.+.+.. ..+..... .....+.......+ ......
T Consensus 167 G~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~-~k~~~i~v~~p~~~~~~~~~~~~~~~ 243 (814)
T COG1201 167 GVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSA-AKKLEIKVISPVEDLIYDEELWAALY 243 (814)
T ss_pred chhhhhhHHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEccc-CCcceEEEEecCCccccccchhHHHH
Confidence 5333 33333344 88999999999743 34455555543 33332222 22222222222111 112345
Q ss_pred HHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCC-CeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCC
Q 015093 268 DTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRD-HTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQ 346 (413)
Q Consensus 268 ~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 346 (413)
..+.++++++. .+|||+|++..|+.++..|++.+ ..+..+||.++...|..+++.|++|+++.+|||+.++.|||+.
T Consensus 244 ~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG 321 (814)
T COG1201 244 ERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIG 321 (814)
T ss_pred HHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccC
Confidence 55666666665 89999999999999999999987 8999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHhhhcccCCC-CCcceEEEEeccccHHHHHH---HHHHhcc--ccccCCcchhcc
Q 015093 347 QVSLVINYDLPTQPENYLHRIGRSGRF-GRKGVAINFVTRDDDRMLAD---IQRFYNV--VIEELPANVADL 412 (413)
Q Consensus 347 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~ 412 (413)
+++.||+++.|.+++.+.||+||+|+. |...+++++.... .+.+.. ....+.- +....|.+.+|.
T Consensus 322 ~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r-~dllE~~vi~~~a~~g~le~~~i~~~~LDV 392 (814)
T COG1201 322 DIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDR-DDLLECLVLADLALEGKLERIKIPKNPLDV 392 (814)
T ss_pred CceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCH-HHHHHHHHHHHHHHhCCcccCCCCCcchhH
Confidence 999999999999999999999999885 4557777776663 233322 2333332 334556666654
No 44
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-44 Score=359.11 Aligned_cols=333 Identities=20% Similarity=0.268 Sum_probs=257.9
Q ss_pred CccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhh-hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
.|+.+++++.+.+.+++.|+..|+++|.++++. +.+|+++++++|||||||+++.++++..+... +.+++|++|+++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~--~~~~l~l~P~~a 79 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE--GGKAVYLVPLKA 79 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--CCeEEEEeChHH
Confidence 467789999999999999999999999999986 78899999999999999999999998876543 358999999999
Q ss_pred HHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCc
Q 015093 120 LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGF 199 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~ 199 (413)
|+.|+++.++.+. ..+.++..++|+...... ....++|+|+||+++..++......++++++||+||+|.+.+..+
T Consensus 80 La~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~r 155 (720)
T PRK00254 80 LAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDR 155 (720)
T ss_pred HHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccc
Confidence 9999999998764 468899999988764322 224579999999999988876665678899999999999988888
Q ss_pred HHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEE-----EEeCc-c-----ccHHH
Q 015093 200 KDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFH-----VNVDK-E-----EWKLD 268 (413)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~-----~~~~~ 268 (413)
...+..++..+....|++++|||+++ ..++..++ +.... .. ...+..+.... ..... . .....
T Consensus 156 g~~le~il~~l~~~~qiI~lSATl~n-~~~la~wl-~~~~~-~~---~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T PRK00254 156 GATLEMILTHMLGRAQILGLSATVGN-AEELAEWL-NAELV-VS---DWRPVKLRKGVFYQGFLFWEDGKIERFPNSWES 229 (720)
T ss_pred hHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHHh-CCccc-cC---CCCCCcceeeEecCCeeeccCcchhcchHHHHH
Confidence 88899999998889999999999975 34555433 32211 11 11111111000 00010 0 11112
Q ss_pred HHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhC---------------------------------CCeeEeecCCCCH
Q 015093 269 TLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSR---------------------------------DHTVSATHGDMDQ 315 (413)
Q Consensus 269 ~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~---------------------------------~~~~~~~~~~~~~ 315 (413)
.+.+.++ .++++||||++++.|+.++..|.+. ...+..+|+++++
T Consensus 230 ~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~ 307 (720)
T PRK00254 230 LVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGR 307 (720)
T ss_pred HHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCH
Confidence 2333333 3568999999999998877666321 2358899999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE-------cCC-CCChhHHHhhhcccCCCC--CcceEEEEecc
Q 015093 316 NSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN-------YDL-PTQPENYLHRIGRSGRFG--RKGVAINFVTR 385 (413)
Q Consensus 316 ~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~-------~~~-~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~ 385 (413)
.+|..+++.|++|.++|||||+++++|+|+|..++||. ++. +.+..+|.||+||+||.| ..|.+++++..
T Consensus 308 ~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~ 387 (720)
T PRK00254 308 TERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATT 387 (720)
T ss_pred HHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecC
Confidence 99999999999999999999999999999999998884 222 335679999999999975 56999999876
Q ss_pred cc
Q 015093 386 DD 387 (413)
Q Consensus 386 ~~ 387 (413)
.+
T Consensus 388 ~~ 389 (720)
T PRK00254 388 EE 389 (720)
T ss_pred cc
Confidence 54
No 45
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-43 Score=350.59 Aligned_cols=344 Identities=18% Similarity=0.247 Sum_probs=255.1
Q ss_pred CccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
.|+++++++.+.+.+...++. |+++|.++++.+.+++++++++|||||||+++.++++..+..+ .++++++|+++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~---~k~v~i~P~raL 77 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG---LKSIYIVPLRSL 77 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC---CcEEEEechHHH
Confidence 467889999999999999986 9999999999999999999999999999999999998877543 489999999999
Q ss_pred HHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcH
Q 015093 121 AQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFK 200 (413)
Q Consensus 121 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~ 200 (413)
+.|.+++++++. ..+..+...+|+...... ....++|+|+||+++...+..+...+.++++||+||+|.+.+..++
T Consensus 78 a~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg 153 (674)
T PRK01172 78 AMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRG 153 (674)
T ss_pred HHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCcc
Confidence 999999998864 457888888887653222 1235799999999999888877666788999999999998777666
Q ss_pred HHHHHHHh---hCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEE-----EeCccccHHHHHHH
Q 015093 201 DQIYDIFQ---HLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHV-----NVDKEEWKLDTLCD 272 (413)
Q Consensus 201 ~~~~~~~~---~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~ 272 (413)
..+..++. ..+.+.+++++|||+++ ..++..++...... ....+..+..... ..+........+..
T Consensus 154 ~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl~~~~~~-----~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~ 227 (674)
T PRK01172 154 PTLETVLSSARYVNPDARILALSATVSN-ANELAQWLNASLIK-----SNFRPVPLKLGILYRKRLILDGYERSQVDINS 227 (674)
T ss_pred HHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHhCCCccC-----CCCCCCCeEEEEEecCeeeecccccccccHHH
Confidence 66655544 34567899999999974 34444433222111 1111111111000 01111111111233
Q ss_pred HHHh--cCCCcEEEEEcCcccHHHHHHHHhhC-------------------------CCeeEeecCCCCHHHHHHHHHHH
Q 015093 273 LYET--LAITQSVIFVNTRRKVDWLTDQMRSR-------------------------DHTVSATHGDMDQNSRDIIMREF 325 (413)
Q Consensus 273 ~~~~--~~~~~~lIf~~~~~~a~~l~~~l~~~-------------------------~~~~~~~~~~~~~~~r~~~~~~f 325 (413)
++.. ..++++||||++++.++.+++.|.+. ...+..+|+++++.+|..+++.|
T Consensus 228 ~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f 307 (674)
T PRK01172 228 LIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMF 307 (674)
T ss_pred HHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHH
Confidence 3332 24579999999999999999888653 12478899999999999999999
Q ss_pred hcCCCeEEEEeCccccCCCCCCCCEEEEcC---------CCCChhHHHhhhcccCCCCC--cceEEEEeccccHHHHHHH
Q 015093 326 RSGSSRVLITTDLLARGIDVQQVSLVINYD---------LPTQPENYLHRIGRSGRFGR--KGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 326 ~~~~~~vli~t~~~~~G~d~~~~~~vi~~~---------~~~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~~~~~~~~~ 394 (413)
++|..+|||||+++++|+|+|...+|| .+ .|.|..+|.||+||+||.|. .|.+++++...+ ....+
T Consensus 308 ~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~--~~~~~ 384 (674)
T PRK01172 308 RNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA--SYDAA 384 (674)
T ss_pred HcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc--cHHHH
Confidence 999999999999999999999865554 33 24688899999999999984 577888866543 22345
Q ss_pred HHHhccc
Q 015093 395 QRFYNVV 401 (413)
Q Consensus 395 ~~~~~~~ 401 (413)
.+++...
T Consensus 385 ~~~l~~~ 391 (674)
T PRK01172 385 KKYLSGE 391 (674)
T ss_pred HHHHcCC
Confidence 6666443
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=3.1e-42 Score=341.48 Aligned_cols=321 Identities=20% Similarity=0.242 Sum_probs=245.7
Q ss_pred CCHHHH-HHHHhCCCCCCcHHHHhhhhhhhCC------CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 47 LKENLL-RGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 47 l~~~~~-~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
.+.... .....++| +|++.|.++++.+..+ .+.++++|||||||.+++.+++..+..+ .+++|++||++
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g---~qvlvLvPT~~ 511 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG---KQVAVLVPTTL 511 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC---CeEEEEeCcHH
Confidence 344444 44455788 5999999999999874 6899999999999999999988876543 58999999999
Q ss_pred HHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 120 LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
|+.|+++.++++....++++..++++.......... ...++|+|+||..+ .....+.+++++|+||+|++.
T Consensus 512 LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrfg 586 (926)
T TIGR00580 512 LAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRFG 586 (926)
T ss_pred HHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccccc
Confidence 999999999998888888888888876644333222 34689999999533 344567789999999999863
Q ss_pred ccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHH
Q 015093 196 SRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYE 275 (413)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (413)
. .....+..++.+.++++|||||.+...........++..+...... ...+......... ......+...+
T Consensus 587 v-----~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~~-~~i~~~i~~el- 657 (926)
T TIGR00580 587 V-----KQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYDP-ELVREAIRREL- 657 (926)
T ss_pred h-----hHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecCH-HHHHHHHHHHH-
Confidence 2 2334556667788999999999876655544444444433332221 1223333322211 11111222222
Q ss_pred hcCCCcEEEEEcCcccHHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE
Q 015093 276 TLAITQSVIFVNTRRKVDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 353 (413)
Q Consensus 276 ~~~~~~~lIf~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~ 353 (413)
..+++++|||++++.++.+++.|++. +.++..+||+|++.+|+++++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 658 -~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi 736 (926)
T TIGR00580 658 -LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII 736 (926)
T ss_pred -HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE
Confidence 24578999999999999999999984 788999999999999999999999999999999999999999999999999
Q ss_pred cCCC-CChhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 354 YDLP-TQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 354 ~~~~-~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
.+.+ .+..+|.|++||+||.|+.|.|++++.+.
T Consensus 737 ~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 737 ERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 8875 46779999999999999999999998654
No 47
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.6e-42 Score=302.80 Aligned_cols=322 Identities=21% Similarity=0.249 Sum_probs=245.0
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEE
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVH 140 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
.++|.||.......+.+ +.||+.|||-|||+++.+.+...+...+ + ++|++.||+.|+.|.++.+.++.......+.
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~-~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~ 90 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG-G-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIA 90 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC-C-eEEEecCCchHHHHHHHHHHHHhCCChhhee
Confidence 48999999999887766 8999999999999999988888776655 3 8999999999999999999999877677888
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
.++|..........+.. ..|+++||+.+.+.+..+.++...+.++|+||||+.........+-+.+.....++.+++||
T Consensus 91 ~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLT 169 (542)
T COG1111 91 ALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLT 169 (542)
T ss_pred eecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEe
Confidence 99998887766666554 58999999999999999999999999999999999765443444444444555678899999
Q ss_pred eeCChhHHHHHHHhc---CCCEEEEecCCccccC---CceEEEEE-----------------------------------
Q 015093 221 ATMPPEALEITRKFM---NKPVRILVKRDELTLE---GIKQFHVN----------------------------------- 259 (413)
Q Consensus 221 AT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~----------------------------------- 259 (413)
|||..+...+..-+- -..+.+......-..+ .....+..
T Consensus 170 ASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~ 249 (542)
T COG1111 170 ASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSS 249 (542)
T ss_pred cCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccC
Confidence 999754433211111 0111111000000000 00000000
Q ss_pred --------------------------------------------------------------------------------
Q 015093 260 -------------------------------------------------------------------------------- 259 (413)
Q Consensus 260 -------------------------------------------------------------------------------- 259 (413)
T Consensus 250 ~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~ 329 (542)
T COG1111 250 PVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPY 329 (542)
T ss_pred cccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChh
Confidence
Q ss_pred -------------eCccccHHHHHHHHHH----hcCCCcEEEEEcCcccHHHHHHHHhhCCCeeE--ee-------cCCC
Q 015093 260 -------------VDKEEWKLDTLCDLYE----TLAITQSVIFVNTRRKVDWLTDQMRSRDHTVS--AT-------HGDM 313 (413)
Q Consensus 260 -------------~~~~~~~~~~l~~~~~----~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~--~~-------~~~~ 313 (413)
......|+..+..+++ +....+++||++.+++|+.+.+.|.+.+..+. ++ ..||
T Consensus 330 ~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GM 409 (542)
T COG1111 330 FKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGM 409 (542)
T ss_pred hHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccccccccc
Confidence 0000113333344333 33556899999999999999999999887763 22 2479
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEecccc
Q 015093 314 DQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 387 (413)
Q Consensus 314 ~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 387 (413)
++.++.++++.|++|.++|||||++.++|+|+|.++.||++++..|+..++||.||+||. ++|.+++++++++
T Consensus 410 sQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 410 SQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred CHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCc
Confidence 999999999999999999999999999999999999999999999999999999999996 8899999999883
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1e-41 Score=333.85 Aligned_cols=320 Identities=18% Similarity=0.247 Sum_probs=238.2
Q ss_pred HHHHHHHHhCCCCCCcHHHHhhhhhhhCC------CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHH
Q 015093 49 ENLLRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQ 122 (413)
Q Consensus 49 ~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~ 122 (413)
..+......++| +|++.|.++++.+..+ .+.++++|||||||.+++++++..+.. +.+++|++||++|+.
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA~ 324 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILAE 324 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHHH
Confidence 344555566777 7999999999999886 369999999999999999999887654 458999999999999
Q ss_pred HHHHHHHHhhcccCceEEEEECCcchHHHHHH----HhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC
Q 015093 123 QIEKVMRALGDYMGVKVHACVGGTSVREDQRI----LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG 198 (413)
Q Consensus 123 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~ 198 (413)
|+++.+++++...++++..++|+......... ....++|+|+|+..+.. ...+.+++++|+||+|++....
T Consensus 325 Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~q 399 (681)
T PRK10917 325 QHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVEQ 399 (681)
T ss_pred HHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhHHH
Confidence 99999999998889999999999875544332 23468999999987642 3346678999999999874322
Q ss_pred cHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcC
Q 015093 199 FKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLA 278 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (413)
...+......+++++|||||.+....... ++................+................+...+ ..
T Consensus 400 -----r~~l~~~~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~--~~ 470 (681)
T PRK10917 400 -----RLALREKGENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEI--AK 470 (681)
T ss_pred -----HHHHHhcCCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHHHH--Hc
Confidence 22233344467899999999765543332 2322211111111112223333322221111122222222 24
Q ss_pred CCcEEEEEcCcc--------cHHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCC
Q 015093 279 ITQSVIFVNTRR--------KVDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348 (413)
Q Consensus 279 ~~~~lIf~~~~~--------~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 348 (413)
+++++|||+.++ .++.+++.|.+. +.++..+||+|++.+|+++++.|++|+.+|||||+++++|+|+|++
T Consensus 471 g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v 550 (681)
T PRK10917 471 GRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNA 550 (681)
T ss_pred CCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCC
Confidence 568999999654 456677777765 4689999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCC-ChhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 349 SLVINYDLPT-QPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 349 ~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
++||+++.|. +...+.|+.||+||.|..|.|++++...
T Consensus 551 ~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~ 589 (681)
T PRK10917 551 TVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDP 589 (681)
T ss_pred cEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCC
Confidence 9999999875 5788999999999999999999999643
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2.1e-41 Score=342.61 Aligned_cols=320 Identities=18% Similarity=0.222 Sum_probs=249.7
Q ss_pred CHHHHHHHHhCCCCCCcHHHHhhhhhhhCC------CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHH
Q 015093 48 KENLLRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELA 121 (413)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~ 121 (413)
+++..+....++| .|++.|.++++.+..+ .+.+++++||+|||.+++.+++..+.. +.+++|++||++|+
T Consensus 587 ~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~qvlvLvPT~eLA 662 (1147)
T PRK10689 587 REQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HKQVAVLVPTTLLA 662 (1147)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHH
Confidence 4556677788888 7999999999999886 789999999999999988777665432 45899999999999
Q ss_pred HHHHHHHHHhhcccCceEEEEECCcchHHHHHHHh----cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc
Q 015093 122 QQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS----AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR 197 (413)
Q Consensus 122 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~ 197 (413)
.|+++.++++....++++..++++.....+...+. ..++|+|+||+.+. ....+.+++++|+||+|++...
T Consensus 663 ~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG~~ 737 (1147)
T PRK10689 663 QQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFGVR 737 (1147)
T ss_pred HHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcchh
Confidence 99999999877777888888888777655554432 46899999997442 3345567899999999997321
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc
Q 015093 198 GFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL 277 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (413)
....+..++.+.+++++||||.+....+....+.++..+...... ...+..+.........+...+..+ .
T Consensus 738 -----~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~il~el---~ 807 (1147)
T PRK10689 738 -----HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVREAILREI---L 807 (1147)
T ss_pred -----HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHHHHHHHHH---h
Confidence 234456677789999999999887777766666666655433222 123333333322211111222222 2
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 355 (413)
.+++++|||++++.++.+++.|++. +..+..+||+|++.+|++++..|++|+.+|||||+++++|+|+|++++||+..
T Consensus 808 r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ 887 (1147)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 (1147)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEec
Confidence 4578999999999999999999987 67899999999999999999999999999999999999999999999999655
Q ss_pred CC-CChhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 356 LP-TQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 356 ~~-~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
.. .+..+|.|++||+||.|+.|.|++++.+.
T Consensus 888 ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred CCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 43 56788999999999999999999998653
No 50
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.4e-41 Score=328.18 Aligned_cols=318 Identities=21% Similarity=0.283 Sum_probs=235.9
Q ss_pred HHHHHHHHhCCCCCCcHHHHhhhhhhhCC------CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHH
Q 015093 49 ENLLRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQ 122 (413)
Q Consensus 49 ~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~ 122 (413)
..+.+.+...+| +|++.|.++++.+..+ .+.++++|||||||.+++++++..+.. +.+++|++||++|+.
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~ 298 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAE 298 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHH
Confidence 445667778888 7999999999999875 258999999999999999998887654 458999999999999
Q ss_pred HHHHHHHHhhcccCceEEEEECCcchHHHHHH----HhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC
Q 015093 123 QIEKVMRALGDYMGVKVHACVGGTSVREDQRI----LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG 198 (413)
Q Consensus 123 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~ 198 (413)
|+++.+++++...++++..++|+......... ....++|+|+|+..+.. ...+.+++++|+||+|++....
T Consensus 299 Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~q 373 (630)
T TIGR00643 299 QHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVEQ 373 (630)
T ss_pred HHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHHH
Confidence 99999999998889999999998876543322 23467999999987643 3456778999999999864332
Q ss_pred cHHHHHHHHhhCC--CCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHH-
Q 015093 199 FKDQIYDIFQHLP--GKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYE- 275 (413)
Q Consensus 199 ~~~~~~~~~~~~~--~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 275 (413)
.. .+..... ..+++++|||||.+...... .++................+....... ... ..+...+.
T Consensus 374 r~----~l~~~~~~~~~~~~l~~SATp~prtl~l~--~~~~l~~~~i~~~p~~r~~i~~~~~~~---~~~-~~~~~~i~~ 443 (630)
T TIGR00643 374 RK----KLREKGQGGFTPHVLVMSATPIPRTLALT--VYGDLDTSIIDELPPGRKPITTVLIKH---DEK-DIVYEFIEE 443 (630)
T ss_pred HH----HHHHhcccCCCCCEEEEeCCCCcHHHHHH--hcCCcceeeeccCCCCCCceEEEEeCc---chH-HHHHHHHHH
Confidence 11 2222222 25789999999976543332 222211111111111112222222211 112 33333332
Q ss_pred h-cCCCcEEEEEcCcc--------cHHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCC
Q 015093 276 T-LAITQSVIFVNTRR--------KVDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGID 344 (413)
Q Consensus 276 ~-~~~~~~lIf~~~~~--------~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d 344 (413)
. ..+++++|||+..+ .++.+++.|.+. +..+..+||++++.+|.++++.|++|+.+|||||+++++|+|
T Consensus 444 ~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvD 523 (630)
T TIGR00643 444 EIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVD 523 (630)
T ss_pred HHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcc
Confidence 2 24568999999764 456777777653 678999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCC-ChhHHHhhhcccCCCCCcceEEEEecc
Q 015093 345 VQQVSLVINYDLPT-QPENYLHRIGRSGRFGRKGVAINFVTR 385 (413)
Q Consensus 345 ~~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 385 (413)
+|++++||+++.+. +...+.|++||+||.|++|.|++++..
T Consensus 524 iP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~ 565 (630)
T TIGR00643 524 VPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKN 565 (630)
T ss_pred cCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECC
Confidence 99999999998875 678899999999999999999999943
No 51
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.1e-40 Score=321.37 Aligned_cols=316 Identities=19% Similarity=0.226 Sum_probs=234.8
Q ss_pred CCCCCCcHHHHhhhhhhhCCC-cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhccc-
Q 015093 58 YGFEKPSAIQQRGIVPFCKGL-DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM- 135 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~~~~~~-~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~- 135 (413)
.||. |+|+|.++++.++.|+ ++++.+|||||||.++.++++..........++++++|+++|+.|.++.+.+++..+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~ 90 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLP 90 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhc
Confidence 4776 9999999999999998 478889999999986654444322222222245557899999999999999888654
Q ss_pred ----------------------CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC---------CC---CCC
Q 015093 136 ----------------------GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ---------SL---RPD 181 (413)
Q Consensus 136 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~---------~~---~~~ 181 (413)
++++..++||.....+.......++|+|+|++.+.+-.... .+ .+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~ 170 (844)
T TIGR02621 91 DVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLG 170 (844)
T ss_pred ccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhc
Confidence 47889999999888888777788999999976554322110 01 156
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhC--CC---CceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEE
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHL--PG---KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQF 256 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~--~~---~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (413)
+++++|+|||| .+.+|...+..+++.. +. ..|+++||||++.........+..++..............+.++
T Consensus 171 ~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~ 248 (844)
T TIGR02621 171 QDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKL 248 (844)
T ss_pred cceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEE
Confidence 68999999999 5678999999999864 33 26899999999887777777777666655544444444444443
Q ss_pred EEEeCccccHHHHHHHHH---HhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHH-----HHHHHHhc-
Q 015093 257 HVNVDKEEWKLDTLCDLY---ETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRD-----IIMREFRS- 327 (413)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~---~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~-----~~~~~f~~- 327 (413)
+ ..+. ..+...+...+ .....+++||||++++.|+.+++.|++.++ ..+||++++.+|. ++++.|++
T Consensus 249 v-~v~~-e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~ 324 (844)
T TIGR02621 249 V-PPSD-EKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQ 324 (844)
T ss_pred E-ecCh-HHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhcc
Confidence 2 2222 22332222221 123457899999999999999999998876 8999999999999 77889987
Q ss_pred ---CC-------CeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceE-EEEe
Q 015093 328 ---GS-------SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVA-INFV 383 (413)
Q Consensus 328 ---~~-------~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~-~~~~ 383 (413)
++ ..|||||+++++|+|++. ++||+...| ...|+||+||++|.|+.|.+ +.++
T Consensus 325 ~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 325 MLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred ccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 44 679999999999999986 777775554 68999999999999885433 4444
No 52
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.3e-41 Score=312.95 Aligned_cols=328 Identities=23% Similarity=0.308 Sum_probs=256.3
Q ss_pred HHHHh-CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 53 RGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 53 ~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
..|+. +|+...++-|.++++++++++++++.+|||+|||+||.+|++-. .+.+|||.|..+|...+.+.+++.
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------~G~TLVVSPLiSLM~DQV~~l~~~ 80 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------EGLTLVVSPLISLMKDQVDQLEAA 80 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------CCCEEEECchHHHHHHHHHHHHHc
Confidence 34443 78999999999999999999999999999999999999998754 238999999999999999988886
Q ss_pred hcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC--cHH---H
Q 015093 132 GDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG--FKD---Q 202 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~--~~~---~ 202 (413)
|+.+..+.+..+..+...+. ....++++-+|+.|..-.....+....+.+++|||||.+..|+ |.. .
T Consensus 81 ----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~ 156 (590)
T COG0514 81 ----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRR 156 (590)
T ss_pred ----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHH
Confidence 66777777765555544333 3357899999999864332222224457899999999998875 554 4
Q ss_pred HHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCE-EEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCc
Q 015093 203 IYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPV-RILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQ 281 (413)
Q Consensus 203 ~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 281 (413)
+..+...++ +++++++|||.++.....+...+.-.. .... ..+..+++............+...+.. ......+.
T Consensus 157 lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~--~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~ 232 (590)
T COG0514 157 LGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFR--GSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKS 232 (590)
T ss_pred HHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEE--ecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCC
Confidence 445566666 788999999998877665555444322 2222 223344444333333322223332222 22445567
Q ss_pred EEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChh
Q 015093 282 SVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPE 361 (413)
Q Consensus 282 ~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~ 361 (413)
.+|||.|++.++.+++.|...|+.+..||++++..+|+.+.+.|..++.+|+|||.++++|||-|+++.|||++.|.|..
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~E 312 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIE 312 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccCCCCCcceEEEEeccccHHHHHHH
Q 015093 362 NYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 362 ~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 394 (413)
.|.|-+||+||.|.+..|++++.+.|......+
T Consensus 313 sYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~ 345 (590)
T COG0514 313 SYYQETGRAGRDGLPAEAILLYSPEDIRWQRYL 345 (590)
T ss_pred HHHHHHhhccCCCCcceEEEeeccccHHHHHHH
Confidence 999999999999999999999999886544433
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.9e-40 Score=335.96 Aligned_cols=328 Identities=21% Similarity=0.282 Sum_probs=234.6
Q ss_pred EeCCCCCchhHHHHHHHHHhcccc----------cCceeEEEEcccHHHHHHHHHHHHHhh------------cccCceE
Q 015093 82 QQAQSGTGKTATFCSGILQQLDYE----------SLQCQALVLAPTRELAQQIEKVMRALG------------DYMGVKV 139 (413)
Q Consensus 82 v~~~tGsGKT~~~~~~i~~~l~~~----------~~~~~~lvl~P~~~l~~q~~~~~~~~~------------~~~~~~~ 139 (413)
|++|||||||++|.+++++.+... ..+.++|||+|+++|++|..+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999998887542 134689999999999999999886421 1247889
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCC-CCCCCccEEEEccchhhhccCcH----HHHHHHHhhCCCCc
Q 015093 140 HACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQS-LRPDYIRMFVLDEADEMLSRGFK----DQIYDIFQHLPGKI 214 (413)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~----~~~~~~~~~~~~~~ 214 (413)
...+|++......+.....++|+|+||++|..++.++. ..++++++||+||+|.+.+..++ ..+.++....+.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 99999999888777777788999999999998776432 35788999999999998765433 34555656666788
Q ss_pred eEEEEeeeCChhHHHHHHHhcCC-CEEEEecCCccccCCceEEEEEeCcc-------------------ccHHHHH-HHH
Q 015093 215 QVGVFSATMPPEALEITRKFMNK-PVRILVKRDELTLEGIKQFHVNVDKE-------------------EWKLDTL-CDL 273 (413)
Q Consensus 215 ~~i~lSAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l-~~~ 273 (413)
|+|++|||..+ ..+..+.+.+. +..+.. ........+... ...... ......+ ..+
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~~r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPAMRHPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCCCcccceEEE-EecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999986 34555544433 444432 222222222221 111110 0000111 122
Q ss_pred HHh-cCCCcEEEEEcCcccHHHHHHHHhhCC---------------------------------CeeEeecCCCCHHHHH
Q 015093 274 YET-LAITQSVIFVNTRRKVDWLTDQMRSRD---------------------------------HTVSATHGDMDQNSRD 319 (413)
Q Consensus 274 ~~~-~~~~~~lIf~~~~~~a~~l~~~l~~~~---------------------------------~~~~~~~~~~~~~~r~ 319 (413)
+.. ...+++||||||+..|+.++..|++.. ..+..+||++++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 222 245689999999999999999997631 1256899999999999
Q ss_pred HHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCC-CCcceEEEEeccccH--HHHHHHHH
Q 015093 320 IIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF-GRKGVAINFVTRDDD--RMLADIQR 396 (413)
Q Consensus 320 ~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~~~~~~~--~~~~~~~~ 396 (413)
.+++.|++|++++||||+.++.|||++.+++||+++.|.|..+|+||+||+||. |..+.++++..+... +....+..
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r~dlle~~~~ve~ 397 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSAVIVEC 397 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999996 334555544433221 11223556
Q ss_pred Hhcccccc--CCcchhcc
Q 015093 397 FYNVVIEE--LPANVADL 412 (413)
Q Consensus 397 ~~~~~~~~--~~~~~~~~ 412 (413)
+++...++ .|.+.+|+
T Consensus 398 ~l~g~iE~~~~p~nplDV 415 (1490)
T PRK09751 398 MFAGRLENLTPPHNPLDV 415 (1490)
T ss_pred HhcCCCCccCCCCChHHH
Confidence 66665554 44444443
No 54
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=5.1e-40 Score=312.27 Aligned_cols=300 Identities=15% Similarity=0.142 Sum_probs=216.6
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEE
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVH 140 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
..|+++|.++++.++.+++.++++|||+|||.++...+...+ ... ..++||++|+++|+.||.+.++++.......+.
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~-~~~-~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~ 190 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYL-ENY-EGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMH 190 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH-hcC-CCeEEEEECcHHHHHHHHHHHHHhcccccccee
Confidence 489999999999999999999999999999997754332222 222 338999999999999999999998654344444
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
.+.+|.... .+.+|+|+|++++.+.... .+..+++||+||||++.+.. +..++..+++..+++++|
T Consensus 191 ~i~~g~~~~-------~~~~I~VaT~qsl~~~~~~---~~~~~~~iIvDEaH~~~~~~----~~~il~~~~~~~~~lGLT 256 (501)
T PHA02558 191 KIYSGTAKD-------TDAPIVVSTWQSAVKQPKE---WFDQFGMVIVDECHLFTGKS----LTSIITKLDNCKFKFGLT 256 (501)
T ss_pred EEecCcccC-------CCCCEEEeeHHHHhhchhh---hccccCEEEEEchhcccchh----HHHHHHhhhccceEEEEe
Confidence 455554321 3468999999998754322 34678999999999986543 456666776677899999
Q ss_pred eeCChhHHHH--HHHhcCCCEEEEecCCcc------ccCCceEEEEE--------------------eCccccHHHHHHH
Q 015093 221 ATMPPEALEI--TRKFMNKPVRILVKRDEL------TLEGIKQFHVN--------------------VDKEEWKLDTLCD 272 (413)
Q Consensus 221 AT~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--------------------~~~~~~~~~~l~~ 272 (413)
|||....... ...++++.... ....+. ....+...... ......+...+..
T Consensus 257 ATp~~~~~~~~~~~~~fG~i~~~-v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~ 335 (501)
T PHA02558 257 GSLRDGKANILQYVGLFGDIFKP-VTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIAN 335 (501)
T ss_pred ccCCCccccHHHHHHhhCCceEE-ecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHH
Confidence 9996432211 12233322211 111000 00000000000 0001112233333
Q ss_pred HHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEe-CccccCCCCCCCC
Q 015093 273 LYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITT-DLLARGIDVQQVS 349 (413)
Q Consensus 273 ~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t-~~~~~G~d~~~~~ 349 (413)
++... .+.+++||+.++++++.+++.|++.+.++..+||+++..+|..+++.|++|+..+||+| +++++|+|+|+++
T Consensus 336 ~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld 415 (501)
T PHA02558 336 LALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLH 415 (501)
T ss_pred HHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccccccc
Confidence 33322 45689999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred EEEEcCCCCChhHHHhhhcccCCCCCcc
Q 015093 350 LVINYDLPTQPENYLHRIGRSGRFGRKG 377 (413)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g 377 (413)
+||++.++.|...|+|++||++|.+..+
T Consensus 416 ~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 416 HVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred EEEEecCCcchhhhhhhhhccccCCCCC
Confidence 9999999999999999999999986543
No 55
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=8.8e-40 Score=291.99 Aligned_cols=340 Identities=20% Similarity=0.233 Sum_probs=269.7
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhh-hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
..+.+.+++++.+...++..|+.+|.|+|..++++ +++|+|.+|+++|+||||++.-++-+..+... +.+.++++|.
T Consensus 193 r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~--g~KmlfLvPL 270 (830)
T COG1202 193 RVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG--GKKMLFLVPL 270 (830)
T ss_pred cccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC--CCeEEEEehh
Confidence 36788899999999999999999999999999988 88999999999999999999987777665543 3489999999
Q ss_pred HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHH----HHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchh
Q 015093 118 RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQR----ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE 193 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~ 193 (413)
.+|++|.+++|++....+++.+..-.|...+..... ....++||||+||+.+...++.. -.+.+++.||+||+|.
T Consensus 271 VALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHt 349 (830)
T COG1202 271 VALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHT 349 (830)
T ss_pred HHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeee
Confidence 999999999998877778888877777554433321 12346799999999998888776 5677899999999998
Q ss_pred hhccCcHHH---HHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHH
Q 015093 194 MLSRGFKDQ---IYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTL 270 (413)
Q Consensus 194 ~~~~~~~~~---~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 270 (413)
+-+...+.. +..-++.+.+..|+|++|||..+.. +..+.+....+.+.. .|-.+............|.+.+
T Consensus 350 L~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~-elA~~l~a~lV~y~~-----RPVplErHlvf~~~e~eK~~ii 423 (830)
T COG1202 350 LEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPE-ELAKKLGAKLVLYDE-----RPVPLERHLVFARNESEKWDII 423 (830)
T ss_pred ccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChH-HHHHHhCCeeEeecC-----CCCChhHeeeeecCchHHHHHH
Confidence 876544433 3333444455899999999997553 455555555543332 2233444455555556777777
Q ss_pred HHHHHhc--------CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccC
Q 015093 271 CDLYETL--------AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARG 342 (413)
Q Consensus 271 ~~~~~~~--------~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 342 (413)
..+.+.. -.+.++||++|+..|..+++.|...|+++..||++++..+|+.+...|.++++.++|+|.+++.|
T Consensus 424 ~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AG 503 (830)
T COG1202 424 ARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAG 503 (830)
T ss_pred HHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcC
Confidence 7776533 34789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEE---cCCC-CChhHHHhhhcccCCCC--CcceEEEEecccc
Q 015093 343 IDVQQVSLVIN---YDLP-TQPENYLHRIGRSGRFG--RKGVAINFVTRDD 387 (413)
Q Consensus 343 ~d~~~~~~vi~---~~~~-~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~ 387 (413)
+|+|.-.+++- ++.. .|+.+|.||.||+||.+ ..|++++++.+.-
T Consensus 504 VDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 504 VDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred CCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 99996554431 1222 48999999999999975 4699999988764
No 56
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.1e-39 Score=314.95 Aligned_cols=335 Identities=23% Similarity=0.287 Sum_probs=254.9
Q ss_pred CCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCC-CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHH
Q 015093 44 SMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQ 122 (413)
Q Consensus 44 ~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~ 122 (413)
...+++.+.+.++..++.++++.|+.++.....+ +|++|++|||||||++++++++..+.+. +.+++++||+++|++
T Consensus 13 ~~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~ 90 (766)
T COG1204 13 KVKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAE 90 (766)
T ss_pred cccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHH
Confidence 3457889999999999999999999999886665 8999999999999999999999988765 459999999999999
Q ss_pred HHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHH
Q 015093 123 QIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQ 202 (413)
Q Consensus 123 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~ 202 (413)
+.+++++ ....+|+++...+|+...... ...+++|+|+||+++....++.......+++||+||+|.+.+...+..
T Consensus 91 Ek~~~~~-~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~ 166 (766)
T COG1204 91 EKYEEFS-RLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPV 166 (766)
T ss_pred HHHHHhh-hHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCce
Confidence 9999999 445679999999999874442 234689999999999999998877777899999999998877756666
Q ss_pred HHHHHhhCCC---CceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCC-ceEEEEEeC--cc---ccH-HHHHHH
Q 015093 203 IYDIFQHLPG---KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEG-IKQFHVNVD--KE---EWK-LDTLCD 272 (413)
Q Consensus 203 ~~~~~~~~~~---~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~---~~~-~~~l~~ 272 (413)
+..+..+.+. .++++++|||.+ +..+...+...++..-...+.+..... ......... .. ... ...+..
T Consensus 167 lE~iv~r~~~~~~~~rivgLSATlp-N~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~ 245 (766)
T COG1204 167 LESIVARMRRLNELIRIVGLSATLP-NAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALEL 245 (766)
T ss_pred ehhHHHHHHhhCcceEEEEEeeecC-CHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHH
Confidence 6555554433 479999999997 556777777666552222222221111 111111111 10 011 222222
Q ss_pred HHHhc-CCCcEEEEEcCcccHHHHHHHHhhC-------------------------------------CCeeEeecCCCC
Q 015093 273 LYETL-AITQSVIFVNTRRKVDWLTDQMRSR-------------------------------------DHTVSATHGDMD 314 (413)
Q Consensus 273 ~~~~~-~~~~~lIf~~~~~~a~~l~~~l~~~-------------------------------------~~~~~~~~~~~~ 314 (413)
.+... .++.+||||+|++.+...++.+... -..+.++|++++
T Consensus 246 v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~ 325 (766)
T COG1204 246 VLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLP 325 (766)
T ss_pred HHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCC
Confidence 33332 5579999999999999999888730 124788999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEE----EcC-----CCCChhHHHhhhcccCCCCC--cceEEEEe
Q 015093 315 QNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI----NYD-----LPTQPENYLHRIGRSGRFGR--KGVAINFV 383 (413)
Q Consensus 315 ~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi----~~~-----~~~s~~~~~Q~~GR~~R~g~--~g~~~~~~ 383 (413)
..+|..+.+.|+.|+++||+||++++.|+|+|.-+++| .++ .+.+..+++||+||+||.|- .|.++++.
T Consensus 326 ~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 326 REDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred HHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 99999999999999999999999999999999777665 234 34578899999999999874 46777777
Q ss_pred cc
Q 015093 384 TR 385 (413)
Q Consensus 384 ~~ 385 (413)
+.
T Consensus 406 ~~ 407 (766)
T COG1204 406 TS 407 (766)
T ss_pred cC
Confidence 33
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.3e-38 Score=308.99 Aligned_cols=307 Identities=17% Similarity=0.270 Sum_probs=232.8
Q ss_pred HHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHH-HhhcccCceEEEEE
Q 015093 65 AIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMR-ALGDYMGVKVHACV 143 (413)
Q Consensus 65 ~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~-~~~~~~~~~~~~~~ 143 (413)
.+-.+.++.+.++++++++++||||||.++..++++... .+.+++++.|++.++.|.++.+. .+....+..+++..
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~v 81 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRV 81 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEE
Confidence 344456667777889999999999999999999987753 23589999999999999999885 44444566676665
Q ss_pred CCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchh-hhccCcHHH-HHHHHhhCCCCceEEEEee
Q 015093 144 GGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE-MLSRGFKDQ-IYDIFQHLPGKIQVGVFSA 221 (413)
Q Consensus 144 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~-~~~~~~~~~-~~~~~~~~~~~~~~i~lSA 221 (413)
++.. ......+|+|+|++.|.+.+... ..++++++||+||+|+ ..+.++... +..+...++.+.++++|||
T Consensus 82 r~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSA 154 (819)
T TIGR01970 82 RGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSA 154 (819)
T ss_pred cccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeC
Confidence 5433 12345789999999999988764 4678899999999995 555554433 3455566777899999999
Q ss_pred eCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccH----HHHHHHHHHhcCCCcEEEEEcCcccHHHHHH
Q 015093 222 TMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWK----LDTLCDLYETLAITQSVIFVNTRRKVDWLTD 297 (413)
Q Consensus 222 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~ 297 (413)
|++... +..++++...+....... .+...+......... ...+..++.. ..+.+|||+++..+++.+++
T Consensus 155 Tl~~~~---l~~~l~~~~vI~~~gr~~---pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~ 227 (819)
T TIGR01970 155 TLDGER---LSSLLPDAPVVESEGRSF---PVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQE 227 (819)
T ss_pred CCCHHH---HHHHcCCCcEEEecCcce---eeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHH
Confidence 997543 345665544443332221 233344333222111 1233334433 35789999999999999999
Q ss_pred HHhh---CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCC----------------
Q 015093 298 QMRS---RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT---------------- 358 (413)
Q Consensus 298 ~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~---------------- 358 (413)
.|++ .++.+..+||+++..+|.++++.|.+|..+|||||+++++|+|+|++++||+.+.+.
T Consensus 228 ~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~ 307 (819)
T TIGR01970 228 QLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETV 307 (819)
T ss_pred HHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEE
Confidence 9987 478899999999999999999999999999999999999999999999999988763
Q ss_pred --ChhHHHhhhcccCCCCCcceEEEEeccccHH
Q 015093 359 --QPENYLHRIGRSGRFGRKGVAINFVTRDDDR 389 (413)
Q Consensus 359 --s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 389 (413)
|..++.||.||+||. ++|.|+.++++.+..
T Consensus 308 ~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 308 RISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred EECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 455799999999998 799999999876543
No 58
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.8e-40 Score=263.49 Aligned_cols=333 Identities=41% Similarity=0.703 Sum_probs=294.5
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
..|..+-+.+++.+++-..||.-|..+|.+.++...-|-+++.++..|.|||.++.++-++.+....+...++++|.|++
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtre 121 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 121 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHH
Confidence 45677779999999999999999999999999999999999999999999999999999999988877788999999999
Q ss_pred HHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc-c
Q 015093 120 LAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS-R 197 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~-~ 197 (413)
|+-|..+++.++...+ +.++.+..||..+......+.+.++|+|+||+.++.+.+++.+.+.+++..|+|||+.++. .
T Consensus 122 lafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~l 201 (387)
T KOG0329|consen 122 LAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQL 201 (387)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHH
Confidence 9999999998888776 7899999999999988888888889999999999999999999999999999999998763 4
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCC-ccccCCceEEEEEeCccccHHHHHHHHHHh
Q 015093 198 GFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD-ELTLEGIKQFHVNVDKEEWKLDTLCDLYET 276 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (413)
+..+.++++++..|...|++.+|||.+.+..-.++.++.+|..+....+ .....++.+++..+.. ..+...+.+++..
T Consensus 202 DMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke-~eKNrkl~dLLd~ 280 (387)
T KOG0329|consen 202 DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKE-NEKNRKLNDLLDV 280 (387)
T ss_pred HHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhh-hhhhhhhhhhhhh
Confidence 5678899999999999999999999999999999999999988776553 4566777777777665 4566677777777
Q ss_pred cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC
Q 015093 277 LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 277 ~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 356 (413)
.....++||+.|... + . | ..+ +++|+.+++|+|+.+++.+++++.
T Consensus 281 LeFNQVvIFvKsv~R-------l-----------------------~-f---~kr-~vat~lfgrgmdiervNi~~NYdm 325 (387)
T KOG0329|consen 281 LEFNQVVIFVKSVQR-------L-----------------------S-F---QKR-LVATDLFGRGMDIERVNIVFNYDM 325 (387)
T ss_pred hhhcceeEeeehhhh-------h-----------------------h-h---hhh-hHHhhhhccccCcccceeeeccCC
Confidence 777889999988764 1 0 2 123 899999999999999999999999
Q ss_pred CCChhHHHhhhcccCCCCCcceEEEEecc-ccHHHHHHHHHHhccccccCCcc
Q 015093 357 PTQPENYLHRIGRSGRFGRKGVAINFVTR-DDDRMLADIQRFYNVVIEELPAN 408 (413)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 408 (413)
|.+..+|.++.||+||.|..|.++.|++. .+...+..+++-....+.++|++
T Consensus 326 p~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 326 PEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred CCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 99999999999999999999999999986 56678889999999999999887
No 59
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.8e-37 Score=314.78 Aligned_cols=283 Identities=21% Similarity=0.267 Sum_probs=216.4
Q ss_pred CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|+ .|+++|..+++.++.|+++++++|||+|||..++. +...+.. .+.+++|++||++|+.|+.+.++.++...+.
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~-~~~~l~~--~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~ 152 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLV-MSLYLAK--KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGC 152 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHH-HHHHHHh--cCCeEEEEeccHHHHHHHHHHHHHHhhhcCc
Confidence 466 89999999999999999999999999999975443 3333322 2568999999999999999999999988888
Q ss_pred eEEEEECCcch-----HHHHHHH-hcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc-----------cCcH
Q 015093 138 KVHACVGGTSV-----REDQRIL-SAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS-----------RGFK 200 (413)
Q Consensus 138 ~~~~~~~~~~~-----~~~~~~~-~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~-----------~~~~ 200 (413)
.+..+.++... ......+ ...++|+|+||+.|.+.+. .+....++++|+||||++.. .+|.
T Consensus 153 ~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~ 230 (1176)
T PRK09401 153 GVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFS 230 (1176)
T ss_pred eEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCCC
Confidence 87777766432 1222222 3468999999999998876 34455689999999999875 3443
Q ss_pred -HHHHHHHhhCCC------------------------CceEEEEeeeCChh-HHHHHHHhcCCCEEEEecCCccccCCce
Q 015093 201 -DQIYDIFQHLPG------------------------KIQVGVFSATMPPE-ALEITRKFMNKPVRILVKRDELTLEGIK 254 (413)
Q Consensus 201 -~~~~~~~~~~~~------------------------~~~~i~lSAT~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (413)
..+..++..++. ..+++++|||.++. ... .++.+...+.+........++.
T Consensus 231 ~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~rnI~ 307 (1176)
T PRK09401 231 EEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYLRNIV 307 (1176)
T ss_pred HHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCcccccCCce
Confidence 456666655543 57899999999764 322 2233343444444444556666
Q ss_pred EEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCccc---HHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCe
Q 015093 255 QFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRK---VDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSR 331 (413)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~---a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 331 (413)
+.+.... .+...+..+++... ..+||||++.+. ++.+++.|+..|+++..+||++ ++.++.|++|+.+
T Consensus 308 ~~yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~ 378 (1176)
T PRK09401 308 DSYIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVD 378 (1176)
T ss_pred EEEEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCC
Confidence 6666544 46667777776654 579999999888 9999999999999999999999 2345999999999
Q ss_pred EEEE----eCccccCCCCCC-CCEEEEcCCCC
Q 015093 332 VLIT----TDLLARGIDVQQ-VSLVINYDLPT 358 (413)
Q Consensus 332 vli~----t~~~~~G~d~~~-~~~vi~~~~~~ 358 (413)
|||+ |+++++|+|+|+ +++||+++.|.
T Consensus 379 VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 379 VLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred EEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 9999 589999999999 89999988874
No 60
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=7.5e-38 Score=300.27 Aligned_cols=310 Identities=16% Similarity=0.179 Sum_probs=223.0
Q ss_pred HHHHhhhhhhhCCCcEEEeCCCCCchhHHHH---------HHHHHhcc---cccCceeEEEEcccHHHHHHHHHHHHHhh
Q 015093 65 AIQQRGIVPFCKGLDVIQQAQSGTGKTATFC---------SGILQQLD---YESLQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 65 ~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~---------~~i~~~l~---~~~~~~~~lvl~P~~~l~~q~~~~~~~~~ 132 (413)
.+|.++++.+.+++++++.|+||||||.+.. .+.+..+. ......++++++|+++|+.|+...+.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 3688999999999999999999999998732 22333322 12234589999999999999998887654
Q ss_pred cc---cCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhh
Q 015093 133 DY---MGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQH 209 (413)
Q Consensus 133 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~ 209 (413)
.. .+..+....|+..... ........+|+++|+.... ..+..+++||+||||+.... ...+..+++.
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~-~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaHEr~~~--~DllL~llk~ 316 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDEL-INTNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVHEHDQI--GDIIIAVARK 316 (675)
T ss_pred CccccCCceEEEEECCcchHH-hhcccCCCCEEEEeCcccc-------cccccCCEEEccccccCccc--hhHHHHHHHH
Confidence 33 3566778888876221 1112225689999965211 23567899999999997543 3445555554
Q ss_pred CC-CCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCcc--------ccHHHHHHHHHHh---c
Q 015093 210 LP-GKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKE--------EWKLDTLCDLYET---L 277 (413)
Q Consensus 210 ~~-~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~---~ 277 (413)
.. ...|+++||||++.+...+ ..++.++..+..... ....+.+.+...... ......+...+.. .
T Consensus 317 ~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~ 393 (675)
T PHA02653 317 HIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPP 393 (675)
T ss_pred hhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcc
Confidence 43 3358999999998776655 577777766665422 223444444432210 1111122233322 2
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHH-hcCCCeEEEEeCccccCCCCCCCCEEEEc
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREF-RSGSSRVLITTDLLARGIDVQQVSLVINY 354 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~~~~~vli~t~~~~~G~d~~~~~~vi~~ 354 (413)
..+.+|||++++.+++.+++.|++. ++.+..+||++++. ++.++.| ++|+.+|||||+++++|+|+|++++||++
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~ 471 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDT 471 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEEC
Confidence 3468999999999999999999887 68999999999974 4566676 68999999999999999999999999999
Q ss_pred C---CCC---------ChhHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 355 D---LPT---------QPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 355 ~---~~~---------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
+ .|. |.++|.||.||+||. ++|.|+.++++.+...
T Consensus 472 G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~p 518 (675)
T PHA02653 472 GRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKP 518 (675)
T ss_pred CCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHH
Confidence 8 443 888999999999999 7899999999876533
No 61
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=9.4e-38 Score=298.18 Aligned_cols=316 Identities=14% Similarity=0.117 Sum_probs=224.4
Q ss_pred CCcHHHHhhhhhhhCC---CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCce
Q 015093 62 KPSAIQQRGIVPFCKG---LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVK 138 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~---~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~ 138 (413)
.||+||.+++..+..+ ++.++++|||+|||++++..+... +.++||+||+..|+.||.+++.++.......
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~ 328 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQ 328 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCCCce
Confidence 7999999999998753 368999999999999987665432 2479999999999999999999986544556
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc--------CCCCCCCccEEEEccchhhhccCcHHHHHHHHhhC
Q 015093 139 VHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR--------QSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHL 210 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~--------~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 210 (413)
+..++|+.... .....+|+|+|++++.....+ ..+....+++||+||||++.+.. +..++..+
T Consensus 329 I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~----fr~il~~l 399 (732)
T TIGR00603 329 ICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAM----FRRVLTIV 399 (732)
T ss_pred EEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHH----HHHHHHhc
Confidence 66666654211 122468999999988643221 11223457999999999985443 44555555
Q ss_pred CCCceEEEEeeeCChhHHH--HHHHhcCCCEEEEecC------CccccCCceEEEEEeC--------------------c
Q 015093 211 PGKIQVGVFSATMPPEALE--ITRKFMNKPVRILVKR------DELTLEGIKQFHVNVD--------------------K 262 (413)
Q Consensus 211 ~~~~~~i~lSAT~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--------------------~ 262 (413)
. ....++|||||..+... .+..+++... +.... ....+........... .
T Consensus 400 ~-a~~RLGLTATP~ReD~~~~~L~~LiGP~v-ye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~ 477 (732)
T TIGR00603 400 Q-AHCKLGLTATLVREDDKITDLNFLIGPKL-YEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVM 477 (732)
T ss_pred C-cCcEEEEeecCcccCCchhhhhhhcCCee-eecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhh
Confidence 4 34579999999643221 2233333322 11111 1111111111111111 1
Q ss_pred cccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcC-CCeEEEEeCcc
Q 015093 263 EEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSG-SSRVLITTDLL 339 (413)
Q Consensus 263 ~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vli~t~~~ 339 (413)
...+...+..+++.+ .+.++||||.+...+..+++.|. +..+||+++..+|.++++.|+++ ..++||+|+++
T Consensus 478 np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVg 552 (732)
T TIGR00603 478 NPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVG 552 (732)
T ss_pred ChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEeccc
Confidence 123555555666654 66799999999999999988883 46689999999999999999875 78999999999
Q ss_pred ccCCCCCCCCEEEEcCCC-CChhHHHhhhcccCCCCCcceE-------EEEeccccHHHHH--HHHHHhc
Q 015093 340 ARGIDVQQVSLVINYDLP-TQPENYLHRIGRSGRFGRKGVA-------INFVTRDDDRMLA--DIQRFYN 399 (413)
Q Consensus 340 ~~G~d~~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~g~~g~~-------~~~~~~~~~~~~~--~~~~~~~ 399 (413)
++|+|+|.+++||+++.| .|..+|+||+||++|.++.|.+ |.+++..+.++.. ..++||.
T Consensus 553 deGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~ 622 (732)
T TIGR00603 553 DTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLV 622 (732)
T ss_pred ccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHH
Confidence 999999999999999887 4999999999999998765554 8888887766544 4556665
No 62
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=5e-38 Score=309.30 Aligned_cols=307 Identities=17% Similarity=0.277 Sum_probs=232.2
Q ss_pred HHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH-hhcccCceEEEEE
Q 015093 65 AIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA-LGDYMGVKVHACV 143 (413)
Q Consensus 65 ~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~-~~~~~~~~~~~~~ 143 (413)
.+-.+.++++.+++++++.++||||||.++.+++++.... ..+++++.|++.++.|.++.+.+ +....+..+++..
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~v 84 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRM 84 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEe
Confidence 3344566677788999999999999999999888876432 24899999999999999998854 4555577787777
Q ss_pred CCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchh-hhccCc-HHHHHHHHhhCCCCceEEEEee
Q 015093 144 GGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE-MLSRGF-KDQIYDIFQHLPGKIQVGVFSA 221 (413)
Q Consensus 144 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~-~~~~~~-~~~~~~~~~~~~~~~~~i~lSA 221 (413)
++.... .....|+|+|++.|.+.+... ..++++++||+||+|+ ..+.+. ...+..++..++++.++++|||
T Consensus 85 r~~~~~------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSA 157 (812)
T PRK11664 85 RAESKV------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSA 157 (812)
T ss_pred cCcccc------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEec
Confidence 665421 234689999999999988764 4678899999999997 333332 2334456666778899999999
Q ss_pred eCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHH----HHHHHHHHhcCCCcEEEEEcCcccHHHHHH
Q 015093 222 TMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKL----DTLCDLYETLAITQSVIFVNTRRKVDWLTD 297 (413)
Q Consensus 222 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~ 297 (413)
|++.. ....++.+...+...... ..+.+.+.......... ..+..++.. ..+.+|||+++..+++.+++
T Consensus 158 Tl~~~---~l~~~~~~~~~I~~~gr~---~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~ 230 (812)
T PRK11664 158 TLDND---RLQQLLPDAPVIVSEGRS---FPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQE 230 (812)
T ss_pred CCCHH---HHHHhcCCCCEEEecCcc---ccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHH
Confidence 99754 234566544444333221 12444444333221111 133334433 35899999999999999999
Q ss_pred HHhh---CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCC----------------
Q 015093 298 QMRS---RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT---------------- 358 (413)
Q Consensus 298 ~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~---------------- 358 (413)
.|++ .++.+..+||+++..+|.++++.|.+|+.+|||||+++++|+|+|++++||+.+.+.
T Consensus 231 ~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~ 310 (812)
T PRK11664 231 QLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQ 310 (812)
T ss_pred HHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEE
Confidence 9987 578899999999999999999999999999999999999999999999999987653
Q ss_pred --ChhHHHhhhcccCCCCCcceEEEEeccccHH
Q 015093 359 --QPENYLHRIGRSGRFGRKGVAINFVTRDDDR 389 (413)
Q Consensus 359 --s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 389 (413)
|..++.||.||+||. ++|.||.++++.+..
T Consensus 311 ~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 311 RISQASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred eechhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 456899999999998 699999999876543
No 63
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.9e-38 Score=297.04 Aligned_cols=334 Identities=20% Similarity=0.258 Sum_probs=238.6
Q ss_pred CCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCce
Q 015093 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVK 138 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~ 138 (413)
....||.||.+.+...+ |+++||++|||+|||+++...+++.+..... .++++++|++.|+.|+...+..++.. ..
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~ 134 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIP--YS 134 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCc--cc
Confidence 44489999999999999 9999999999999999999999888877665 59999999999999999888887765 34
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCC-CCCccEEEEccchhhh-ccCcHHHHHHHHhhCCCCceE
Q 015093 139 VHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLR-PDYIRMFVLDEADEML-SRGFKDQIYDIFQHLPGKIQV 216 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~-~~~~~~iIiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~ 216 (413)
+....+|..............+|+++||+.+.+.+.+.... ++.+.++|+||||+.. +..|...+...+.......|+
T Consensus 135 ~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qI 214 (746)
T KOG0354|consen 135 VTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQI 214 (746)
T ss_pred ceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccE
Confidence 44455553332222233446799999999999998876554 4889999999999976 445666666777777667799
Q ss_pred EEEeeeCChhHHHH--------------------------------------------------HHHhcC----CC-EEE
Q 015093 217 GVFSATMPPEALEI--------------------------------------------------TRKFMN----KP-VRI 241 (413)
Q Consensus 217 i~lSAT~~~~~~~~--------------------------------------------------~~~~~~----~~-~~~ 241 (413)
++|||||..+.... .+.++. .. ...
T Consensus 215 LgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~ 294 (746)
T KOG0354|consen 215 LGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEI 294 (746)
T ss_pred EEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcccc
Confidence 99999997322111 000000 00 000
Q ss_pred Ee---cC-------Ccccc--------------------------CCce-------------------------------
Q 015093 242 LV---KR-------DELTL--------------------------EGIK------------------------------- 254 (413)
Q Consensus 242 ~~---~~-------~~~~~--------------------------~~~~------------------------------- 254 (413)
.. .. ..... ..++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~ 374 (746)
T KOG0354|consen 295 SDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIR 374 (746)
T ss_pred ccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhH
Confidence 00 00 00000 0000
Q ss_pred ----------EEEEEeCccccHHHHHHHHHHh----cCCCcEEEEEcCcccHHHHHHHHhh---CCCeeEeec-------
Q 015093 255 ----------QFHVNVDKEEWKLDTLCDLYET----LAITQSVIFVNTRRKVDWLTDQMRS---RDHTVSATH------- 310 (413)
Q Consensus 255 ----------~~~~~~~~~~~~~~~l~~~~~~----~~~~~~lIf~~~~~~a~~l~~~l~~---~~~~~~~~~------- 310 (413)
+.....+....++..+.+++.+ .+..+++||+.+++.|..+...|.+ .+++..++-
T Consensus 375 ~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~ 454 (746)
T KOG0354|consen 375 NFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQ 454 (746)
T ss_pred HHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecccccc
Confidence 0000001112345555555433 3556899999999999999999973 223333333
Q ss_pred -CCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHH
Q 015093 311 -GDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDR 389 (413)
Q Consensus 311 -~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 389 (413)
.+|++.++.++++.|++|.++|||||+++++|+|++.++.||.++...|+..++||.|| ||. +.|+|+++++..+..
T Consensus 455 ~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~~ 532 (746)
T KOG0354|consen 455 STGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEVI 532 (746)
T ss_pred ccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhHH
Confidence 37899999999999999999999999999999999999999999999999999999999 997 569999999866555
Q ss_pred HHHHHHHHh
Q 015093 390 MLADIQRFY 398 (413)
Q Consensus 390 ~~~~~~~~~ 398 (413)
..+.....+
T Consensus 533 ~~E~~~~~~ 541 (746)
T KOG0354|consen 533 EFERNNLAK 541 (746)
T ss_pred HHHHHHHhH
Confidence 555444433
No 64
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2.6e-37 Score=304.64 Aligned_cols=333 Identities=23% Similarity=0.332 Sum_probs=266.2
Q ss_pred CHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHH
Q 015093 48 KENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKV 127 (413)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~ 127 (413)
...+...+.+.|+..||.||.+|+..+.+|++++|..|||||||.+|++||++.+...... ++|++.|+++|++.+.+.
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~r 134 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAER 134 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHHH
Confidence 3445788888999999999999999999999999999999999999999999999887755 899999999999999999
Q ss_pred HHHhhcccC--ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC----CCCCCCccEEEEccchhhhccCcH-
Q 015093 128 MRALGDYMG--VKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ----SLRPDYIRMFVLDEADEMLSRGFK- 200 (413)
Q Consensus 128 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~----~~~~~~~~~iIiDE~h~~~~~~~~- 200 (413)
++++....+ +.....+|++.......+..+.++|++|||+||...+... .+.+.++++||+||+|... ..++
T Consensus 135 l~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr-Gv~GS 213 (851)
T COG1205 135 LRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR-GVQGS 213 (851)
T ss_pred HHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc-ccchh
Confidence 999988877 7888888988877777778889999999999998855432 2345669999999999643 2233
Q ss_pred ------HHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCc--------cccH
Q 015093 201 ------DQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDK--------EEWK 266 (413)
Q Consensus 201 ------~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 266 (413)
+.+...++..+...++|+.|||..+. .++...+.+......+ .....+.....+....+. ....
T Consensus 214 ~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v-~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~ 291 (851)
T COG1205 214 EVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPV-DEDGSPRGLRYFVRREPPIRELAESIRRSA 291 (851)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeec-cCCCCCCCceEEEEeCCcchhhhhhcccch
Confidence 33334444455688999999999754 4667777777766642 333334444444444431 1123
Q ss_pred HHHHHHHHHhc--CCCcEEEEEcCcccHHHHH----HHHhhCC----CeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 015093 267 LDTLCDLYETL--AITQSVIFVNTRRKVDWLT----DQMRSRD----HTVSATHGDMDQNSRDIIMREFRSGSSRVLITT 336 (413)
Q Consensus 267 ~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~----~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t 336 (413)
...+..+.... .+-++|+|+.+++.++.++ +.+...+ ..+..+++++...+|.+++..|++|+..++++|
T Consensus 292 ~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st 371 (851)
T COG1205 292 LAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIAT 371 (851)
T ss_pred HHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecc
Confidence 33444444333 4468999999999999987 4444445 568899999999999999999999999999999
Q ss_pred CccccCCCCCCCCEEEEcCCCC-ChhHHHhhhcccCCCCCcceEEEEec
Q 015093 337 DLLARGIDVQQVSLVINYDLPT-QPENYLHRIGRSGRFGRKGVAINFVT 384 (413)
Q Consensus 337 ~~~~~G~d~~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~ 384 (413)
++++.|+|+..++.||..+.|. +..+++|+.||+||.++.+..+.+..
T Consensus 372 ~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 372 NALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred hhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 9999999999999999999999 99999999999999987777666666
No 65
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.1e-36 Score=306.41 Aligned_cols=323 Identities=20% Similarity=0.259 Sum_probs=239.6
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEE
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVH 140 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
.+|++||..++..++.+ ++++++|||+|||.++++++...+. ..+.++||++|+++|+.||.+.++++....+..+.
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~ 90 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIV 90 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEE
Confidence 47999999999888777 8999999999999999888877663 23459999999999999999999988654455777
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
.++|+.........+ ...+|+|+||+.+...+.........+++||+||||++.+......+...+......++++++|
T Consensus 91 ~~~g~~~~~~r~~~~-~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lT 169 (773)
T PRK13766 91 VFTGEVSPEKRAELW-EKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLT 169 (773)
T ss_pred EEeCCCCHHHHHHHH-hCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEE
Confidence 888877655444333 4579999999999988877777788899999999999865544444444444445567899999
Q ss_pred eeCChhHHH---HHHHhcCCCEEEEecCCc-----cccCCceE-------------------------------------
Q 015093 221 ATMPPEALE---ITRKFMNKPVRILVKRDE-----LTLEGIKQ------------------------------------- 255 (413)
Q Consensus 221 AT~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~------------------------------------- 255 (413)
|||...... ....+....+.+...... .....+..
T Consensus 170 aTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~ 249 (773)
T PRK13766 170 ASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSIS 249 (773)
T ss_pred cCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence 999533221 111111111100000000 00000000
Q ss_pred -----------------EE-------------------------------------------------------------
Q 015093 256 -----------------FH------------------------------------------------------------- 257 (413)
Q Consensus 256 -----------------~~------------------------------------------------------------- 257 (413)
..
T Consensus 250 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~ 329 (773)
T PRK13766 250 PDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVED 329 (773)
T ss_pred CCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhC
Confidence 00
Q ss_pred ----------EEeCccccHHHHHHHHHHh----cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCC--------CCH
Q 015093 258 ----------VNVDKEEWKLDTLCDLYET----LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGD--------MDQ 315 (413)
Q Consensus 258 ----------~~~~~~~~~~~~l~~~~~~----~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~--------~~~ 315 (413)
........|+..+..+++. ..++++||||+++..++.+++.|...++.+..++|. +++
T Consensus 330 ~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~ 409 (773)
T PRK13766 330 PRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQ 409 (773)
T ss_pred HHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCH
Confidence 0000111244445555543 466799999999999999999999989988888876 888
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccH
Q 015093 316 NSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388 (413)
Q Consensus 316 ~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 388 (413)
.+|.++++.|++|+.++||+|+++++|+|+|.+++||+++++++...|+||+||+||.| +|.+++++.....
T Consensus 410 ~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t~ 481 (773)
T PRK13766 410 KEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGTR 481 (773)
T ss_pred HHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCCh
Confidence 99999999999999999999999999999999999999999999999999999999986 4888888887644
No 66
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=6.6e-37 Score=281.99 Aligned_cols=301 Identities=16% Similarity=0.175 Sum_probs=203.8
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchH---------
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVR--------- 149 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 149 (413)
++++.+|||||||.+++.+++..+... ...++++++|+++|+.|+++.++.+... .+...+++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~-~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ-KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC-CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCch
Confidence 479999999999999999999876543 3459999999999999999999887432 334444432210
Q ss_pred ---HHHHHH------hcCCcEEEeChHHHHHHHHcC-CC---C--CCCccEEEEccchhhhccCcHHHHHHHHhhCC-CC
Q 015093 150 ---EDQRIL------SAGVHVVVGTPGRVFDMLRRQ-SL---R--PDYIRMFVLDEADEMLSRGFKDQIYDIFQHLP-GK 213 (413)
Q Consensus 150 ---~~~~~~------~~~~~Iii~T~~~l~~~~~~~-~~---~--~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~-~~ 213 (413)
...... ....+|+++||+.+...+... .. . .-..+++|+||+|.+....+.. +..++..+. .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~ 155 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDND 155 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcC
Confidence 000000 113579999999998776652 11 0 1113789999999986543322 444444443 46
Q ss_pred ceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc-CCCcEEEEEcCcccH
Q 015093 214 IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL-AITQSVIFVNTRRKV 292 (413)
Q Consensus 214 ~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lIf~~~~~~a 292 (413)
.+++++|||++....++.........................+.........+...+..+++.. .++++||||++++.+
T Consensus 156 ~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~ 235 (358)
T TIGR01587 156 VPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRA 235 (358)
T ss_pred CCEEEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHH
Confidence 8899999999866655555443321111111110000001111111122223445555555543 467999999999999
Q ss_pred HHHHHHHhhCCC--eeEeecCCCCHHHHHHH----HHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhh
Q 015093 293 DWLTDQMRSRDH--TVSATHGDMDQNSRDII----MREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHR 366 (413)
Q Consensus 293 ~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~----~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~ 366 (413)
+.+++.|++.+. .+..+||++++.+|.+. ++.|++++..+||||+++++|+|++ ++.+|....| ..+|+||
T Consensus 236 ~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr 312 (358)
T TIGR01587 236 QEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQR 312 (358)
T ss_pred HHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHH
Confidence 999999988765 58999999999998764 8899999999999999999999996 7777776554 7899999
Q ss_pred hcccCCCCCc----ceEEEEecccc
Q 015093 367 IGRSGRFGRK----GVAINFVTRDD 387 (413)
Q Consensus 367 ~GR~~R~g~~----g~~~~~~~~~~ 387 (413)
+||+||.|+. |.++++....+
T Consensus 313 ~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 313 LGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred hccccCCCCCCCCCCeEEEEeecCC
Confidence 9999998754 36677766544
No 67
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.3e-35 Score=283.56 Aligned_cols=319 Identities=15% Similarity=0.142 Sum_probs=227.8
Q ss_pred CcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEE
Q 015093 63 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHAC 142 (413)
Q Consensus 63 ~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 142 (413)
++|+|.+++..+.-++..++.++||+|||+++++|++..... +..++|++|+..|+.|+.+.+..+...+++++...
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~---g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~ 145 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT---GKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLG 145 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc---CCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 444555555544445557999999999999999998655443 33799999999999999999999999999999988
Q ss_pred ECCcc---hHHHHHHHhcCCcEEEeChHHH-HHHHHc------CCCCCCCccEEEEccchhhhc-cC-------------
Q 015093 143 VGGTS---VREDQRILSAGVHVVVGTPGRV-FDMLRR------QSLRPDYIRMFVLDEADEMLS-RG------------- 198 (413)
Q Consensus 143 ~~~~~---~~~~~~~~~~~~~Iii~T~~~l-~~~~~~------~~~~~~~~~~iIiDE~h~~~~-~~------------- 198 (413)
.++.. .....+.....++|+++||+.| .+.+.. ....+..+.++|+||||.++- ..
T Consensus 146 ~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~ 225 (762)
T TIGR03714 146 VVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQ 225 (762)
T ss_pred ECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCccc
Confidence 76521 1222233345789999999999 444432 223456789999999998642 11
Q ss_pred --cHHHHHHHHhhCCC--------------------------------------------------------C-------
Q 015093 199 --FKDQIYDIFQHLPG--------------------------------------------------------K------- 213 (413)
Q Consensus 199 --~~~~~~~~~~~~~~--------------------------------------------------------~------- 213 (413)
.......+...+.. +
T Consensus 226 ~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~ 305 (762)
T TIGR03714 226 SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTN 305 (762)
T ss_pred hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEEC
Confidence 00111111111100 0
Q ss_pred ------------------------------------------------------ceEEEEeeeCChhHHHHHHHhcCCCE
Q 015093 214 ------------------------------------------------------IQVGVFSATMPPEALEITRKFMNKPV 239 (413)
Q Consensus 214 ------------------------------------------------------~~~i~lSAT~~~~~~~~~~~~~~~~~ 239 (413)
.++.|||+|......++.. .++-.+
T Consensus 306 ~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~-iY~l~v 384 (762)
T TIGR03714 306 GEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE-TYSLSV 384 (762)
T ss_pred CEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHH-HhCCCE
Confidence 3678888887665555554 344333
Q ss_pred EEEecCCccccCCceEEEEEeCccccHHHHHHHHHHh--cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHH
Q 015093 240 RILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET--LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNS 317 (413)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~ 317 (413)
...+...+........ ..+.....+..++...+.. ..+.++||||++++.++.+++.|.+.|+++..+|+++...+
T Consensus 385 ~~IPt~kp~~r~d~~d--~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E 462 (762)
T TIGR03714 385 VKIPTNKPIIRIDYPD--KIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKE 462 (762)
T ss_pred EEcCCCCCeeeeeCCC--eEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHH
Confidence 3222222221111111 1222334677777777765 35679999999999999999999999999999999999888
Q ss_pred HHHHHHHHhcCCCeEEEEeCccccCCCCC---------CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccH
Q 015093 318 RDIIMREFRSGSSRVLITTDLLARGIDVQ---------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388 (413)
Q Consensus 318 r~~~~~~f~~~~~~vli~t~~~~~G~d~~---------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 388 (413)
+..+...++.| .|+|||+++++|+|++ ++++|+.++.|..... .|+.||+||.|.+|.+++|++..|.
T Consensus 463 ~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 463 AQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred HHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 87777666655 7999999999999999 8999999999887766 9999999999999999999998765
Q ss_pred HH
Q 015093 389 RM 390 (413)
Q Consensus 389 ~~ 390 (413)
-+
T Consensus 540 l~ 541 (762)
T TIGR03714 540 LI 541 (762)
T ss_pred hh
Confidence 43
No 68
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.9e-35 Score=278.02 Aligned_cols=317 Identities=20% Similarity=0.219 Sum_probs=240.0
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.|+++|..++..++.|+ |..+.||+|||+++.+|++..... +..++|++||..|+.|.++.+..+...+++++.+
T Consensus 103 ~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~ 177 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---GLPVHVITVNDYLAERDAELMRPLYEALGLTVGC 177 (656)
T ss_pred CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---CCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 89999999999999999 999999999999999999876544 4589999999999999999999999999999999
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcCC-------------------------CCCCCccEEEEccchhhh
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRV-FDMLRRQS-------------------------LRPDYIRMFVLDEADEML 195 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~~-------------------------~~~~~~~~iIiDE~h~~~ 195 (413)
+.|+.... .+.....++|+|+|...| +++++..- .....+.+.|+||+|.++
T Consensus 178 i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 178 VVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVL 255 (656)
T ss_pred EeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeeccccee
Confidence 99997643 333445789999999888 33443221 112446789999999643
Q ss_pred -ccC-----------------cH--------------------------------HHHHHHHhhCC--------------
Q 015093 196 -SRG-----------------FK--------------------------------DQIYDIFQHLP-------------- 211 (413)
Q Consensus 196 -~~~-----------------~~--------------------------------~~~~~~~~~~~-------------- 211 (413)
+.. .. ..+..++..++
T Consensus 256 iDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~ 335 (656)
T PRK12898 256 IDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREELVR 335 (656)
T ss_pred eccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHH
Confidence 110 00 00111100000
Q ss_pred ----------CC-------------------------------------------------------------ceEEEEe
Q 015093 212 ----------GK-------------------------------------------------------------IQVGVFS 220 (413)
Q Consensus 212 ----------~~-------------------------------------------------------------~~~i~lS 220 (413)
.+ .++.+||
T Consensus 336 ~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmT 415 (656)
T PRK12898 336 QALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMT 415 (656)
T ss_pred HHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhccc
Confidence 00 3688999
Q ss_pred eeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHH
Q 015093 221 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQ 298 (413)
Q Consensus 221 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~ 298 (413)
||......++...|..+++.+......... ....+... ....+...+...++.. .+.++||||++++.++.+++.
T Consensus 416 GTa~~~~~El~~~y~l~vv~IPt~kp~~r~--~~~~~v~~-t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~ 492 (656)
T PRK12898 416 GTAREVAGELWSVYGLPVVRIPTNRPSQRR--HLPDEVFL-TAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSAL 492 (656)
T ss_pred CcChHHHHHHHHHHCCCeEEeCCCCCccce--ecCCEEEe-CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHH
Confidence 999877777777777776655544433221 12222222 2356777788877664 357899999999999999999
Q ss_pred HhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCC---CCC-----EEEEcCCCCChhHHHhhhccc
Q 015093 299 MRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQ---QVS-----LVINYDLPTQPENYLHRIGRS 370 (413)
Q Consensus 299 l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~---~~~-----~vi~~~~~~s~~~~~Q~~GR~ 370 (413)
|.+.|+++..+||+++. ++..+..+..+...|+|||+++++|+|++ .+. +||+++.|.|...|.|++||+
T Consensus 493 L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRT 570 (656)
T PRK12898 493 LREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRC 570 (656)
T ss_pred HHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccc
Confidence 99999999999998654 44445556666667999999999999999 665 999999999999999999999
Q ss_pred CCCCCcceEEEEeccccHHH
Q 015093 371 GRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 371 ~R~g~~g~~~~~~~~~~~~~ 390 (413)
||.|++|.++++++..|.-+
T Consensus 571 GRqG~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 571 GRQGDPGSYEAILSLEDDLL 590 (656)
T ss_pred cCCCCCeEEEEEechhHHHH
Confidence 99999999999999876543
No 69
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.5e-35 Score=306.91 Aligned_cols=325 Identities=18% Similarity=0.191 Sum_probs=241.8
Q ss_pred HHHHHHHHh-CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHH
Q 015093 49 ENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKV 127 (413)
Q Consensus 49 ~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~ 127 (413)
+++.+.+++ .|+ .|+++|..+++.++.|+++++.||||+|||++++++++.... .+.+++|++||++|+.|+.+.
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---~g~~aLVl~PTreLa~Qi~~~ 141 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---KGKKCYIILPTTLLVKQTVEK 141 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---cCCeEEEEECHHHHHHHHHHH
Confidence 344556655 788 699999999999999999999999999999966555443322 245899999999999999999
Q ss_pred HHHhhccc--CceEEEEECCcchHHHHH----HHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc-----
Q 015093 128 MRALGDYM--GVKVHACVGGTSVREDQR----ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS----- 196 (413)
Q Consensus 128 ~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~----- 196 (413)
++.++... +..+..++|+........ ...+.++|+|+||+.|...+... ....++++|+||||.++.
T Consensus 142 l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~~kni 219 (1638)
T PRK14701 142 IESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKASKNI 219 (1638)
T ss_pred HHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceecccccccc
Confidence 99988765 456677888877655432 22345899999999888766542 125689999999999875
Q ss_pred ------cCcHHHHHH----HHh----------------------hCCCCce-EEEEeeeCChhHHHHHHHhcCCCEEEEe
Q 015093 197 ------RGFKDQIYD----IFQ----------------------HLPGKIQ-VGVFSATMPPEALEITRKFMNKPVRILV 243 (413)
Q Consensus 197 ------~~~~~~~~~----~~~----------------------~~~~~~~-~i~lSAT~~~~~~~~~~~~~~~~~~~~~ 243 (413)
.+|...+.. ++. .+++..+ .+.+|||.++.. . ...++.++..+..
T Consensus 220 d~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~-~-~~~l~~~~l~f~v 297 (1638)
T PRK14701 220 DRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG-D-RVKLYRELLGFEV 297 (1638)
T ss_pred chhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh-H-HHHHhhcCeEEEe
Confidence 245444432 221 2344445 567999997531 1 2234455665666
Q ss_pred cCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCccc---HHHHHHHHhhCCCeeEeecCCCCHHHHHH
Q 015093 244 KRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRK---VDWLTDQMRSRDHTVSATHGDMDQNSRDI 320 (413)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~---a~~l~~~l~~~~~~~~~~~~~~~~~~r~~ 320 (413)
.........+.+.+...... .+ ..+..+++.. +..+||||++++. |+.+++.|.+.|+++..+|++ |..
T Consensus 298 ~~~~~~lr~i~~~yi~~~~~-~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~ 369 (1638)
T PRK14701 298 GSGRSALRNIVDVYLNPEKI-IK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKK 369 (1638)
T ss_pred cCCCCCCCCcEEEEEECCHH-HH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHH
Confidence 55555556677666544332 22 4677777765 4689999999875 589999999999999999985 889
Q ss_pred HHHHHhcCCCeEEEEe----CccccCCCCCC-CCEEEEcCCCC---ChhHHHhhh-------------cccCCCCCcceE
Q 015093 321 IMREFRSGSSRVLITT----DLLARGIDVQQ-VSLVINYDLPT---QPENYLHRI-------------GRSGRFGRKGVA 379 (413)
Q Consensus 321 ~~~~f~~~~~~vli~t----~~~~~G~d~~~-~~~vi~~~~~~---s~~~~~Q~~-------------GR~~R~g~~g~~ 379 (413)
.++.|++|+.+|||+| +.+++|+|+|+ +++||+++.|. |...|.|.. ||++|.|.+..+
T Consensus 370 ~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~ 449 (1638)
T PRK14701 370 GFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEG 449 (1638)
T ss_pred HHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchh
Confidence 9999999999999999 48899999998 99999999998 777665655 999999988777
Q ss_pred EEEeccccHH
Q 015093 380 INFVTRDDDR 389 (413)
Q Consensus 380 ~~~~~~~~~~ 389 (413)
+..+...+..
T Consensus 450 ~~~~~~~~~~ 459 (1638)
T PRK14701 450 VLDVFPEDVE 459 (1638)
T ss_pred HHHhHHHHHH
Confidence 7444444433
No 70
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=7.7e-35 Score=264.97 Aligned_cols=289 Identities=15% Similarity=0.209 Sum_probs=199.0
Q ss_pred HHHhhhhhhhCCCc--EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhccc----CceE
Q 015093 66 IQQRGIVPFCKGLD--VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM----GVKV 139 (413)
Q Consensus 66 ~Q~~~~~~~~~~~~--~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~----~~~~ 139 (413)
+|.++++++..+++ +++.+|||||||.+++++++.. ..++++++|+++|++|+.+.++++.... +..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 69999999998875 7889999999999998888742 2378999999999999999998886432 4556
Q ss_pred EEEECCcchH--H------------------HHHHHhcCCcEEEeChHHHHHHHHcCC----C----CCCCccEEEEccc
Q 015093 140 HACVGGTSVR--E------------------DQRILSAGVHVVVGTPGRVFDMLRRQS----L----RPDYIRMFVLDEA 191 (413)
Q Consensus 140 ~~~~~~~~~~--~------------------~~~~~~~~~~Iii~T~~~l~~~~~~~~----~----~~~~~~~iIiDE~ 191 (413)
..++|..... . ........+.|+++||+.|...+.... . .+..+++||+||+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 6666652221 0 001112357889999999987654321 1 1356899999999
Q ss_pred hhhhccCc-----HHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHh--cCCCEEEEecCCcc----------------
Q 015093 192 DEMLSRGF-----KDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKF--MNKPVRILVKRDEL---------------- 248 (413)
Q Consensus 192 h~~~~~~~-----~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~--~~~~~~~~~~~~~~---------------- 248 (413)
|.+..... ......+++......+++++|||+++.....+... ++.+..........
T Consensus 155 H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 234 (357)
T TIGR03158 155 HLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSF 234 (357)
T ss_pred cccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccc
Confidence 98653221 11233333433445789999999998777766654 44443222221000
Q ss_pred --ccCCceEEEEEeCccccHHHHHHHH-------HHhcCCCcEEEEEcCcccHHHHHHHHhhCC--CeeEeecCCCCHHH
Q 015093 249 --TLEGIKQFHVNVDKEEWKLDTLCDL-------YETLAITQSVIFVNTRRKVDWLTDQMRSRD--HTVSATHGDMDQNS 317 (413)
Q Consensus 249 --~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~--~~~~~~~~~~~~~~ 317 (413)
..+.+...+.. ....+...+..+ ++...++++||||++++.++.+++.|++.+ +.+..+||.+++.+
T Consensus 235 ~~~~~~i~~~~~~--~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~ 312 (357)
T TIGR03158 235 RPVLPPVELELIP--APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKD 312 (357)
T ss_pred ceeccceEEEEEe--CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHH
Confidence 00123332322 112233222222 222356799999999999999999999864 57888999999988
Q ss_pred HHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccC
Q 015093 318 RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSG 371 (413)
Q Consensus 318 r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~ 371 (413)
|.+. ++..|||||+++++|+|++.. .||. + |.+...|+||+||+|
T Consensus 313 R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi~-~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 313 RERA------MQFDILLGTSTVDVGVDFKRD-WLIF-S-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHh------ccCCEEEEecHHhcccCCCCc-eEEE-C-CCCHHHHhhhcccCC
Confidence 8654 378899999999999999986 5553 4 789999999999986
No 71
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.8e-35 Score=275.47 Aligned_cols=297 Identities=19% Similarity=0.237 Sum_probs=210.0
Q ss_pred CCCcHHHHhhhhhhhC----CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 61 EKPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~----~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
..|++||.++++++.+ ++.+++++|||+|||.+++..+... +.++|||||+.+|+.||.+.+.+.....
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~------~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~- 107 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL------KRSTLVLVPTKELLDQWAEALKKFLLLN- 107 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh------cCCEEEEECcHHHHHHHHHHHHHhcCCc-
Confidence 3799999999999998 7889999999999999987666544 2249999999999999987777764322
Q ss_pred ceEEEEECCcchHHHHHHHhcC-CcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCce
Q 015093 137 VKVHACVGGTSVREDQRILSAG-VHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQ 215 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~-~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 215 (413)
..++.+.++... .. ..|.|+|++++........+....+++||+||||++.+..+. .+...+.....
T Consensus 108 ~~~g~~~~~~~~--------~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~----~~~~~~~~~~~ 175 (442)
T COG1061 108 DEIGIYGGGEKE--------LEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR----RILELLSAAYP 175 (442)
T ss_pred cccceecCceec--------cCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH----HHHHhhhcccc
Confidence 234444444321 11 369999999998753222233345899999999999766555 33333332222
Q ss_pred EEEEeeeCChhHH---HHHHHhcCCCEEEEecCC------ccccCCceEEEEEeC-------------------------
Q 015093 216 VGVFSATMPPEAL---EITRKFMNKPVRILVKRD------ELTLEGIKQFHVNVD------------------------- 261 (413)
Q Consensus 216 ~i~lSAT~~~~~~---~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~------------------------- 261 (413)
+++|||||..... ......++ +..+..... ...+...........
T Consensus 176 ~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (442)
T COG1061 176 RLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLR 254 (442)
T ss_pred eeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhh
Confidence 8999999864321 11222222 222222211 111111111111000
Q ss_pred ----------ccccHHHHHHHHHHhc-CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCC
Q 015093 262 ----------KEEWKLDTLCDLYETL-AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSS 330 (413)
Q Consensus 262 ----------~~~~~~~~l~~~~~~~-~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 330 (413)
....+...+..++..+ ...+++||+.+..++..++..+...+. +..+++.++..+|..+++.|+.|..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~ 333 (442)
T COG1061 255 AENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGI 333 (442)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCC
Confidence 0112333444444444 467999999999999999999998877 8899999999999999999999999
Q ss_pred eEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCC-CCCcce
Q 015093 331 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGR-FGRKGV 378 (413)
Q Consensus 331 ~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R-~g~~g~ 378 (413)
++|+++.++.+|+|+|+++++|+.+++.|...|.||+||+.| ...++.
T Consensus 334 ~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 334 KVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred CEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 999999999999999999999999999999999999999999 333443
No 72
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7.8e-35 Score=280.94 Aligned_cols=321 Identities=17% Similarity=0.208 Sum_probs=238.3
Q ss_pred CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|. .|+++|..+...+.+|+ +..+.||+|||+++++|++..... +..+.|++||..||.|.++.+..+...+++
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl 148 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---GKGVHLITVNDYLAKRDAEEMGQVYEFLGL 148 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---CCCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 355 89999999998888776 999999999999999998755443 458999999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcC------CCCCCCccEEEEccchhhh-ccC-----------
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRV-FDMLRRQ------SLRPDYIRMFVLDEADEML-SRG----------- 198 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~------~~~~~~~~~iIiDE~h~~~-~~~----------- 198 (413)
+++++.|+.......+. ...++|+++|++.| .+++... ......+.++|+||+|.++ +..
T Consensus 149 ~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~ 227 (790)
T PRK09200 149 TVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPR 227 (790)
T ss_pred eEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCc
Confidence 99999999873333322 34589999999888 4444332 1245668999999999754 110
Q ss_pred ----cHHHHHHHHhhCCC--------------------------------------------------------C-----
Q 015093 199 ----FKDQIYDIFQHLPG--------------------------------------------------------K----- 213 (413)
Q Consensus 199 ----~~~~~~~~~~~~~~--------------------------------------------------------~----- 213 (413)
....+..+...+.. +
T Consensus 228 ~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV 307 (790)
T PRK09200 228 VQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIV 307 (790)
T ss_pred cccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEE
Confidence 00111111111100 0
Q ss_pred --------------------------------------------------------ceEEEEeeeCChhHHHHHHHhcCC
Q 015093 214 --------------------------------------------------------IQVGVFSATMPPEALEITRKFMNK 237 (413)
Q Consensus 214 --------------------------------------------------------~~~i~lSAT~~~~~~~~~~~~~~~ 237 (413)
.++.|||+|......++.. .++-
T Consensus 308 ~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~-~Y~l 386 (790)
T PRK09200 308 YDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFE-VYNM 386 (790)
T ss_pred ECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHH-HhCC
Confidence 3677888887655544444 3333
Q ss_pred CEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHh--cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCH
Q 015093 238 PVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET--LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQ 315 (413)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~ 315 (413)
.+...+...+.......... ......+...+...+.. ..+.++||||++++.++.+++.|.+.|+++..+|+++..
T Consensus 387 ~v~~IPt~kp~~r~d~~~~i--~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~ 464 (790)
T PRK09200 387 EVVQIPTNRPIIRIDYPDKV--FVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAA 464 (790)
T ss_pred cEEECCCCCCcccccCCCeE--EcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccH
Confidence 33322222222222222111 12335677777777755 356799999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCccccCCCC---CCCC-----EEEEcCCCCChhHHHhhhcccCCCCCcceEEEEecccc
Q 015093 316 NSRDIIMREFRSGSSRVLITTDLLARGIDV---QQVS-----LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 387 (413)
Q Consensus 316 ~~r~~~~~~f~~~~~~vli~t~~~~~G~d~---~~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 387 (413)
.++..+...++.| .|+|||+++++|+|+ |.+. +||+++.|.|...|.|++||+||.|.+|.+++|++..|
T Consensus 465 ~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 465 KEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred HHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 8887777776655 799999999999999 6898 99999999999999999999999999999999999876
Q ss_pred HHH
Q 015093 388 DRM 390 (413)
Q Consensus 388 ~~~ 390 (413)
.-+
T Consensus 543 ~l~ 545 (790)
T PRK09200 543 DLL 545 (790)
T ss_pred HHH
Confidence 543
No 73
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=9.8e-35 Score=275.80 Aligned_cols=320 Identities=20% Similarity=0.248 Sum_probs=239.6
Q ss_pred CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|. .|++.|..+...+..|+ +..++||+|||+++.+|++-.... +..+.|++||..||.|.++.+..+...+++
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---G~~V~VvTpt~~LA~qdae~~~~l~~~LGL 126 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAEWMGQVYRFLGL 126 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---CCCEEEEcCCHHHHHHHHHHHHHHhccCCC
Confidence 344 79999999998887776 999999999999999988533333 337999999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcC------CCCCCCccEEEEccchhhhc-cCcH---------
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRV-FDMLRRQ------SLRPDYIRMFVLDEADEMLS-RGFK--------- 200 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~------~~~~~~~~~iIiDE~h~~~~-~~~~--------- 200 (413)
++.++.|+........ ...++|+++|+..| +++++.. ...+..+.++|+||+|.++- ....
T Consensus 127 sv~~i~g~~~~~~r~~--~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~ 204 (745)
T TIGR00963 127 SVGLILSGMSPEERRE--AYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAE 204 (745)
T ss_pred eEEEEeCCCCHHHHHH--hcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCC
Confidence 9999999887544433 33579999999999 7777665 24567789999999998653 1100
Q ss_pred ------HHHHHHHhhCCC--------------------------------------------------------C-----
Q 015093 201 ------DQIYDIFQHLPG--------------------------------------------------------K----- 213 (413)
Q Consensus 201 ------~~~~~~~~~~~~--------------------------------------------------------~----- 213 (413)
.....+.+.+.. +
T Consensus 205 ~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV 284 (745)
T TIGR00963 205 KSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIV 284 (745)
T ss_pred CchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 000001000000 0
Q ss_pred --------------------------------------------------------ceEEEEeeeCChhHHHHHHHhcCC
Q 015093 214 --------------------------------------------------------IQVGVFSATMPPEALEITRKFMNK 237 (413)
Q Consensus 214 --------------------------------------------------------~~~i~lSAT~~~~~~~~~~~~~~~ 237 (413)
.++.+||+|......++...| +-
T Consensus 285 ~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY-~l 363 (745)
T TIGR00963 285 RDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIY-NL 363 (745)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHh-CC
Confidence 367788888865554444444 33
Q ss_pred CEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHh--cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCH
Q 015093 238 PVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET--LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQ 315 (413)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~ 315 (413)
.+...+...+.......... +.....+...+...+.. ..+.++||||++++.++.+++.|.+.|+++..+|++ +
T Consensus 364 ~vv~IPtnkp~~R~d~~d~i--~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q 439 (745)
T TIGR00963 364 EVVVVPTNRPVIRKDLSDLV--YKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--N 439 (745)
T ss_pred CEEEeCCCCCeeeeeCCCeE--EcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--h
Confidence 33333222222111111111 22234466666555532 266799999999999999999999999999999998 6
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCccccCCCCCC-------CCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccH
Q 015093 316 NSRDIIMREFRSGSSRVLITTDLLARGIDVQQ-------VSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388 (413)
Q Consensus 316 ~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~-------~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 388 (413)
.+|+..+..|..+...|+|||+++++|+|++. ..+||.++.|.|...+.|+.||+||.|.+|.+.+|++..|.
T Consensus 440 ~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 440 HEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred HHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 78888999999999999999999999999998 55999999999999999999999999999999999998876
Q ss_pred HH
Q 015093 389 RM 390 (413)
Q Consensus 389 ~~ 390 (413)
-+
T Consensus 520 l~ 521 (745)
T TIGR00963 520 LM 521 (745)
T ss_pred HH
Confidence 44
No 74
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=3.3e-34 Score=291.56 Aligned_cols=291 Identities=21% Similarity=0.252 Sum_probs=211.5
Q ss_pred HHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHH
Q 015093 50 NLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMR 129 (413)
Q Consensus 50 ~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~ 129 (413)
++.+.+.+.....|+++|..+++.++.|+++++++|||+|||..+ +++...+.. .+.+++|++||++|+.|+.+.++
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~-l~~~~~l~~--~g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFG-LAMSLFLAK--KGKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHHHHHh--cCCeEEEEeCHHHHHHHHHHHHH
Confidence 344555554445899999999999999999999999999999744 444433322 25689999999999999999999
Q ss_pred HhhcccCceE---EEEECCcchHHHHH----HHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc------
Q 015093 130 ALGDYMGVKV---HACVGGTSVREDQR----ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS------ 196 (413)
Q Consensus 130 ~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~------ 196 (413)
.++...++.. ..++|+........ ....+++|+|+||+.|...+.... . .++++|+||||++.+
T Consensus 143 ~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~~~k~vd 219 (1171)
T TIGR01054 143 SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLKASKNVD 219 (1171)
T ss_pred HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhhccccHH
Confidence 9987766543 34667766544322 223458999999999988776522 2 689999999999986
Q ss_pred -----cCcHH-HHHHH----------------------HhhCCCCce--EEEEeeeCCh-hHHHHHHHhcCCCEEEEecC
Q 015093 197 -----RGFKD-QIYDI----------------------FQHLPGKIQ--VGVFSATMPP-EALEITRKFMNKPVRILVKR 245 (413)
Q Consensus 197 -----~~~~~-~~~~~----------------------~~~~~~~~~--~i~lSAT~~~-~~~~~~~~~~~~~~~~~~~~ 245 (413)
.+|.. .+..+ ++..+...+ ++++|||..+ ... ..++.+...+....
T Consensus 220 ~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~---~~l~r~ll~~~v~~ 296 (1171)
T TIGR01054 220 KLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR---AKLFRELLGFEVGG 296 (1171)
T ss_pred HHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH---HHHcccccceEecC
Confidence 23433 23332 223344444 5678999533 322 12344444444444
Q ss_pred CccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCc---ccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHH
Q 015093 246 DELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTR---RKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIM 322 (413)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~---~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~ 322 (413)
......++.+.+..... +...+..+++.. +..+||||++. +.|+.+++.|.+.|+++..+||+++ ++.+
T Consensus 297 ~~~~~r~I~~~~~~~~~---~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l 368 (1171)
T TIGR01054 297 GSDTLRNVVDVYVEDED---LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDY 368 (1171)
T ss_pred ccccccceEEEEEeccc---HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHH
Confidence 44445566666553332 234566677665 36799999999 9999999999999999999999986 3689
Q ss_pred HHHhcCCCeEEEEe----CccccCCCCCC-CCEEEEcCCC
Q 015093 323 REFRSGSSRVLITT----DLLARGIDVQQ-VSLVINYDLP 357 (413)
Q Consensus 323 ~~f~~~~~~vli~t----~~~~~G~d~~~-~~~vi~~~~~ 357 (413)
+.|++|+.+|||+| +++++|+|+|+ +++||+++.|
T Consensus 369 ~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 369 EKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred HHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 99999999999995 89999999999 8999997665
No 75
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.1e-34 Score=282.12 Aligned_cols=335 Identities=19% Similarity=0.220 Sum_probs=258.1
Q ss_pred HHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHH
Q 015093 49 ENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVM 128 (413)
Q Consensus 49 ~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~ 128 (413)
+........+|....++-|.+++..++.|++++|.+|||+||++||.+|++-. ++-.+||.|..+|.+.+...+
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------~gitvVISPL~SLm~DQv~~L 324 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------GGVTVVISPLISLMQDQVTHL 324 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------CCceEEeccHHHHHHHHHHhh
Confidence 34445556789999999999999999999999999999999999998877533 338899999999998877666
Q ss_pred HHhhcccCceEEEEECCcchHHHH----HHHhc--CCcEEEeChHHHHHHHH--cCCCCCCC---ccEEEEccchhhhcc
Q 015093 129 RALGDYMGVKVHACVGGTSVREDQ----RILSA--GVHVVVGTPGRVFDMLR--RQSLRPDY---IRMFVLDEADEMLSR 197 (413)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~Iii~T~~~l~~~~~--~~~~~~~~---~~~iIiDE~h~~~~~ 197 (413)
.. .++....+.++....... .+..+ ..+|++.||+++...-. .....+.. +.++|+||||....|
T Consensus 325 ~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqW 400 (941)
T KOG0351|consen 325 SK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQW 400 (941)
T ss_pred hh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhh
Confidence 44 377777787776653322 22233 57899999999864321 11112222 789999999998765
Q ss_pred C--cH---HHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHH
Q 015093 198 G--FK---DQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCD 272 (413)
Q Consensus 198 ~--~~---~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 272 (413)
+ |. ..+..+..+++ ..+++++|||....+...+...++-..... ....+.++++......-.........+..
T Consensus 401 gHdFRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~-~~~sfnR~NL~yeV~~k~~~~~~~~~~~~ 478 (941)
T KOG0351|consen 401 GHDFRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPEL-FKSSFNRPNLKYEVSPKTDKDALLDILEE 478 (941)
T ss_pred cccccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcce-ecccCCCCCceEEEEeccCccchHHHHHH
Confidence 4 33 33444455555 478999999998877766655555443332 23344555555444433322333344444
Q ss_pred HHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEE
Q 015093 273 LYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 (413)
Q Consensus 273 ~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi 352 (413)
.-.....+.+||+|.++..++.++..|...+..+..||++|+..+|+.+...|..++.+|++||=++++|+|-|+++.||
T Consensus 479 ~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~Vi 558 (941)
T KOG0351|consen 479 SKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVI 558 (941)
T ss_pred hhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEE
Confidence 44555778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHH
Q 015093 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQ 395 (413)
Q Consensus 353 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 395 (413)
++..|.|...|-|-+||+||.|.+..|++|+...|...+..+.
T Consensus 559 H~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll 601 (941)
T KOG0351|consen 559 HYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLL 601 (941)
T ss_pred ECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHH
Confidence 9999999999999999999999999999999988766655443
No 76
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.8e-34 Score=273.97 Aligned_cols=332 Identities=20% Similarity=0.286 Sum_probs=242.1
Q ss_pred HhCCCCCCcHHHHhhhhhhhC-CCcEEEeCCCCCchhHHHHHHHHHhccc-------ccCceeEEEEcccHHHHHHHHHH
Q 015093 56 YAYGFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDY-------ESLQCQALVLAPTRELAQQIEKV 127 (413)
Q Consensus 56 ~~~~~~~~~~~Q~~~~~~~~~-~~~~lv~~~tGsGKT~~~~~~i~~~l~~-------~~~~~~~lvl~P~~~l~~q~~~~ 127 (413)
.-+++..++.+|..+++.+-+ +.+.||+||||||||..++++|+..+.+ .+.+.++++|+|+++||.++.+.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 346777899999999998755 6789999999999999999999988864 23456999999999999999999
Q ss_pred HHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCC---CCCCCccEEEEccchhhhccCcHHHHH
Q 015093 128 MRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQS---LRPDYIRMFVLDEADEMLSRGFKDQIY 204 (413)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~---~~~~~~~~iIiDE~h~~~~~~~~~~~~ 204 (413)
+.+-....|+++..++|+....... -..++|+|+||+++.-.-++.. ...+.+++||+||+|.+- ..++..+.
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLh-d~RGpvlE 259 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLH-DDRGPVLE 259 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhc-CcccchHH
Confidence 9888888899999999998866554 2358999999999965544433 224458999999999664 44566666
Q ss_pred HHHhhC-------CCCceEEEEeeeCChhHHHHHHHhcCCC-EEEEecCCccccCCceEEEEEeCcc----------ccH
Q 015093 205 DIFQHL-------PGKIQVGVFSATMPPEALEITRKFMNKP-VRILVKRDELTLEGIKQFHVNVDKE----------EWK 266 (413)
Q Consensus 205 ~~~~~~-------~~~~~~i~lSAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 266 (413)
.+..+. ....+++++|||+++ ..+.+..+--++ ..+..-...+.+-.+.....-.+.. +.+
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~ 338 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVC 338 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHH
Confidence 655444 357899999999974 445554444332 2233333334443333333322221 112
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhC-----------------------CCeeEeecCCCCHHHHHHHHH
Q 015093 267 LDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSR-----------------------DHTVSATHGDMDQNSRDIIMR 323 (413)
Q Consensus 267 ~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~-----------------------~~~~~~~~~~~~~~~r~~~~~ 323 (413)
.+.+.+.+. .+.+++|||.++..+...++.|.+. ......+|+++...+|.....
T Consensus 339 ~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~ 416 (1230)
T KOG0952|consen 339 YDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEK 416 (1230)
T ss_pred HHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHH
Confidence 333333333 3468999999999988888888642 134678999999999999999
Q ss_pred HHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC----------CCChhHHHhhhcccCCCC--CcceEEEEeccccHHHH
Q 015093 324 EFRSGSSRVLITTDLLARGIDVQQVSLVINYDL----------PTQPENYLHRIGRSGRFG--RKGVAINFVTRDDDRML 391 (413)
Q Consensus 324 ~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~----------~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~~~~ 391 (413)
.|..|.++||+||..++.|+|+|.-.++|--.. ..+..+..|.+||+||.. ..|.++++.+..-...+
T Consensus 417 ~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y 496 (1230)
T KOG0952|consen 417 EFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHY 496 (1230)
T ss_pred HHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHH
Confidence 999999999999999999999986555553221 124567899999999974 56888888877654444
Q ss_pred HHH
Q 015093 392 ADI 394 (413)
Q Consensus 392 ~~~ 394 (413)
.++
T Consensus 497 ~sL 499 (1230)
T KOG0952|consen 497 ESL 499 (1230)
T ss_pred HHH
Confidence 433
No 77
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=5.1e-33 Score=256.97 Aligned_cols=326 Identities=19% Similarity=0.242 Sum_probs=246.9
Q ss_pred CCCCHHH-HHHHHhCCCCCCcHHHHhhhhhhhCC------CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 45 MGLKENL-LRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 45 ~~l~~~~-~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
++.+..+ .+.+...+| +|+..|.+++..|... -+-+++|.-|||||.+++++++..+.++ .++...+||
T Consensus 245 ~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G---~Q~ALMAPT 320 (677)
T COG1200 245 LPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG---YQAALMAPT 320 (677)
T ss_pred CCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC---CeeEEeccH
Confidence 3344443 445566777 8999999999998764 2479999999999999999998887664 489999999
Q ss_pred HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHH----HhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchh
Q 015093 118 RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRI----LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE 193 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~ 193 (413)
.-||.|.++.+.++....++++..++|.......... ..+..+|+|+|.. +......+.++.++|+||=|+
T Consensus 321 EILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA-----LiQd~V~F~~LgLVIiDEQHR 395 (677)
T COG1200 321 EILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA-----LIQDKVEFHNLGLVIIDEQHR 395 (677)
T ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch-----hhhcceeecceeEEEEecccc
Confidence 9999999999999999999999999998776554433 3456899999954 444556677799999999999
Q ss_pred hhccCcHHHHHHHHhhCCC-CceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHH
Q 015093 194 MLSRGFKDQIYDIFQHLPG-KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCD 272 (413)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~-~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 272 (413)
+.-.. ...++.... .+.++.|||||.|.... ...+++...-.+..-+.....+.............+..+..
T Consensus 396 FGV~Q-----R~~L~~KG~~~Ph~LvMTATPIPRTLA--lt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ 468 (677)
T COG1200 396 FGVHQ-----RLALREKGEQNPHVLVMTATPIPRTLA--LTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIRE 468 (677)
T ss_pred ccHHH-----HHHHHHhCCCCCcEEEEeCCCchHHHH--HHHhccccchhhccCCCCCCceEEEEeccccHHHHHHHHHH
Confidence 75433 233334444 57899999999876543 34444443333333333334455444444333333333333
Q ss_pred HHHhcCCCcEEEEEcCccc--------HHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccC
Q 015093 273 LYETLAITQSVIFVNTRRK--------VDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARG 342 (413)
Q Consensus 273 ~~~~~~~~~~lIf~~~~~~--------a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 342 (413)
-+. .+.++-+.||-+++ |..+++.|+.. ++++..+||.|+.++++++++.|++|+.+|||||.+.+.|
T Consensus 469 ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVG 546 (677)
T COG1200 469 EIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVG 546 (677)
T ss_pred HHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEec
Confidence 333 55688999998765 45666777643 5679999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCC-CChhHHHhhhcccCCCCCcceEEEEeccccH
Q 015093 343 IDVQQVSLVINYDLP-TQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388 (413)
Q Consensus 343 ~d~~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 388 (413)
+|+|+.+.+|+.+.. +..+++-|.-||+||.+..++|++++.++..
T Consensus 547 VdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~ 593 (677)
T COG1200 547 VDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLS 593 (677)
T ss_pred ccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCC
Confidence 999999998887653 5678999999999999999999999998873
No 78
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=8.8e-34 Score=241.96 Aligned_cols=339 Identities=17% Similarity=0.264 Sum_probs=261.1
Q ss_pred CCCCCHHHHHHHHh-CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHH
Q 015093 44 SMGLKENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQ 122 (413)
Q Consensus 44 ~~~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~ 122 (413)
+++++....+.|+. +.....||.|..++++...++++++..|||.||+++|.+|++-. .+.+||+||.++|++
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------dg~alvi~plislme 148 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------DGFALVICPLISLME 148 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------CCceEeechhHHHHH
Confidence 46777888777764 67788999999999999999999999999999999998888643 348999999999999
Q ss_pred HHHHHHHHhhcccCceEEEEECCcchHHHHHHH------hcCCcEEEeChHHHHHHHH-----cCCCCCCCccEEEEccc
Q 015093 123 QIEKVMRALGDYMGVKVHACVGGTSVREDQRIL------SAGVHVVVGTPGRVFDMLR-----RQSLRPDYIRMFVLDEA 191 (413)
Q Consensus 123 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~Iii~T~~~l~~~~~-----~~~~~~~~~~~iIiDE~ 191 (413)
.+.-.++++ ++....+....+.......- +....+++.||+.+...-. .+.+....+.+|-+||+
T Consensus 149 dqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidev 224 (695)
T KOG0353|consen 149 DQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEV 224 (695)
T ss_pred HHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecce
Confidence 988888887 44444444444333222211 2345789999998854321 23445566899999999
Q ss_pred hhhhccC--cH---HHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCc-ccc
Q 015093 192 DEMLSRG--FK---DQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDK-EEW 265 (413)
Q Consensus 192 h~~~~~~--~~---~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 265 (413)
|....|+ |. ..+ .++.+..++.+++++|||..+++.+..+..+.-.-.+... ..+..+++......-+. .++
T Consensus 225 hccsqwghdfr~dy~~l-~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~-a~fnr~nl~yev~qkp~n~dd 302 (695)
T KOG0353|consen 225 HCCSQWGHDFRPDYKAL-GILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFR-AGFNRPNLKYEVRQKPGNEDD 302 (695)
T ss_pred eehhhhCcccCcchHHH-HHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheee-cccCCCCceeEeeeCCCChHH
Confidence 9987654 22 233 3444444578899999999888777666655543333322 33445555555444433 344
Q ss_pred HHHHHHHHHHh-cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCC
Q 015093 266 KLDTLCDLYET-LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGID 344 (413)
Q Consensus 266 ~~~~l~~~~~~-~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d 344 (413)
....+..+++. ..+...+|+|-+.+.++.++..|+..|+.+..||..+.+.++.-.-+.|..|+++|+|+|-++++|+|
T Consensus 303 ~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgid 382 (695)
T KOG0353|consen 303 CIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGID 382 (695)
T ss_pred HHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCC
Confidence 55666666654 35668899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCCChhHHHh-------------------------------------------hhcccCCCCCcceEEE
Q 015093 345 VQQVSLVINYDLPTQPENYLH-------------------------------------------RIGRSGRFGRKGVAIN 381 (413)
Q Consensus 345 ~~~~~~vi~~~~~~s~~~~~Q-------------------------------------------~~GR~~R~g~~g~~~~ 381 (413)
-|+++.||+-+.|.|...|-| ..||+||.+.+..|++
T Consensus 383 kpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cil 462 (695)
T KOG0353|consen 383 KPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCIL 462 (695)
T ss_pred CCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEE
Confidence 999999999999999999999 6799999999999999
Q ss_pred EeccccHHHHHHH
Q 015093 382 FVTRDDDRMLADI 394 (413)
Q Consensus 382 ~~~~~~~~~~~~~ 394 (413)
+|.-.|.....++
T Consensus 463 yy~~~difk~ssm 475 (695)
T KOG0353|consen 463 YYGFADIFKISSM 475 (695)
T ss_pred EechHHHHhHHHH
Confidence 9987776655544
No 79
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=5.4e-33 Score=274.71 Aligned_cols=336 Identities=16% Similarity=0.127 Sum_probs=223.9
Q ss_pred CCcHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceE
Q 015093 62 KPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKV 139 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~ 139 (413)
.|.|||..++..+... ..+++..++|.|||..+.+.+...+..+. ..++|||||. .|..||..++.+.. ++..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~-~~rvLIVvP~-sL~~QW~~El~~kF---~l~~ 226 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGR-AERVLILVPE-TLQHQWLVEMLRRF---NLRF 226 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCC-CCcEEEEcCH-HHHHHHHHHHHHHh---CCCe
Confidence 6999999998776553 45999999999999988666655444433 4489999997 89999999996543 3444
Q ss_pred EEEECCcchHHHHH--HHhcCCcEEEeChHHHHHHHH-cCCCCCCCccEEEEccchhhhccC--cHHHHHHHHhhCCCCc
Q 015093 140 HACVGGTSVREDQR--ILSAGVHVVVGTPGRVFDMLR-RQSLRPDYIRMFVLDEADEMLSRG--FKDQIYDIFQHLPGKI 214 (413)
Q Consensus 140 ~~~~~~~~~~~~~~--~~~~~~~Iii~T~~~l~~~~~-~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~~~~~~~~~~~ 214 (413)
..+.++........ ......+++|+|++.+...-. ...+....+++||+||||++.+.. .......+........
T Consensus 227 ~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~ 306 (956)
T PRK04914 227 SLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIP 306 (956)
T ss_pred EEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccC
Confidence 44443321110000 001135799999998875211 111223358999999999986321 1122222222222344
Q ss_pred eEEEEeeeCChh-------------------HHHHH------------------------------HHhcCCCE------
Q 015093 215 QVGVFSATMPPE-------------------ALEIT------------------------------RKFMNKPV------ 239 (413)
Q Consensus 215 ~~i~lSAT~~~~-------------------~~~~~------------------------------~~~~~~~~------ 239 (413)
.++++||||... ...+. ..++.+..
T Consensus 307 ~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~ 386 (956)
T PRK04914 307 GVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQ 386 (956)
T ss_pred CEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHh
Confidence 689999999510 00000 00000000
Q ss_pred ---------------------------EEEecC-----CccccCCceEEEEEeC--------------------------
Q 015093 240 ---------------------------RILVKR-----DELTLEGIKQFHVNVD-------------------------- 261 (413)
Q Consensus 240 ---------------------------~~~~~~-----~~~~~~~~~~~~~~~~-------------------------- 261 (413)
.+.... ..+............+
T Consensus 387 ~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~~~ 466 (956)
T PRK04914 387 AANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQIYQ 466 (956)
T ss_pred hhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHHHH
Confidence 000000 0000000111101000
Q ss_pred ---------ccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHH-hhCCCeeEeecCCCCHHHHHHHHHHHhcC--C
Q 015093 262 ---------KEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQM-RSRDHTVSATHGDMDQNSRDIIMREFRSG--S 329 (413)
Q Consensus 262 ---------~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~ 329 (413)
....+...+..+++.....|+||||+++..+..+.+.| ...|+++..+||+++..+|+++++.|+++ .
T Consensus 467 ~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~ 546 (956)
T PRK04914 467 EFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDG 546 (956)
T ss_pred HHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCC
Confidence 01234556777777777889999999999999999999 46799999999999999999999999974 5
Q ss_pred CeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhcccc
Q 015093 330 SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVI 402 (413)
Q Consensus 330 ~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (413)
.+|||||+++++|+|++++++||+++.|+++..|.||+||++|.|+.+.+.+++..........+.+.|...+
T Consensus 547 ~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 547 AQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred ccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhc
Confidence 8999999999999999999999999999999999999999999999988777776655445556666665533
No 80
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=9e-34 Score=245.55 Aligned_cols=277 Identities=30% Similarity=0.505 Sum_probs=227.1
Q ss_pred eeEEEEcccHHHHHHHHHHHHHhh---cccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccE
Q 015093 109 CQALVLAPTRELAQQIEKVMRALG---DYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRM 185 (413)
Q Consensus 109 ~~~lvl~P~~~l~~q~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~ 185 (413)
+.++|+-|+++|++|.++.+++|- ....++..++.||.....+.+...++.+|+|+||.++.+.+......+..+++
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 568999999999999999666553 33344555778888888888888899999999999999999998888999999
Q ss_pred EEEccchhhhccCcHHHHHHHHhhCCC------CceEEEEeeeCCh-hHHHHHHHhcCCCEEEEecCCccccCCceEEEE
Q 015093 186 FVLDEADEMLSRGFKDQIYDIFQHLPG------KIQVGVFSATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFHV 258 (413)
Q Consensus 186 iIiDE~h~~~~~~~~~~~~~~~~~~~~------~~~~i~lSAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (413)
+|+||++.++..++...+.++...+|. +.+.+..|||+.. +......+.+..|..+....+...++...++..
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~ 446 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVK 446 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcccee
Confidence 999999999988889888888887764 5688899999863 445566677777877777777766666555554
Q ss_pred EeCcc-----------------------------ccHHHHHHH---------HHHhcCCCcEEEEEcCcccHHHHHHHHh
Q 015093 259 NVDKE-----------------------------EWKLDTLCD---------LYETLAITQSVIFVNTRRKVDWLTDQMR 300 (413)
Q Consensus 259 ~~~~~-----------------------------~~~~~~l~~---------~~~~~~~~~~lIf~~~~~~a~~l~~~l~ 300 (413)
.+... ......... .++++...+++|||.++..++.+.+++.
T Consensus 447 lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~ 526 (725)
T KOG0349|consen 447 LVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMN 526 (725)
T ss_pred ecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHH
Confidence 33221 011111111 2344556789999999999999999998
Q ss_pred hCC---CeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcc
Q 015093 301 SRD---HTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG 377 (413)
Q Consensus 301 ~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g 377 (413)
+.| +.++.+|++..+.+|.+-++.|+.+..++||||+++++|+|+..+..+|++..|.....|.+|+||+||+.+-|
T Consensus 527 qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermg 606 (725)
T KOG0349|consen 527 QKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMG 606 (725)
T ss_pred HcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcc
Confidence 864 68999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred eEEEEecc
Q 015093 378 VAINFVTR 385 (413)
Q Consensus 378 ~~~~~~~~ 385 (413)
.++.++.-
T Consensus 607 laislvat 614 (725)
T KOG0349|consen 607 LAISLVAT 614 (725)
T ss_pred eeEEEeec
Confidence 88887753
No 81
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.4e-33 Score=243.91 Aligned_cols=329 Identities=19% Similarity=0.247 Sum_probs=237.4
Q ss_pred HHHHHHHh-CCCCC-CcHHHHhhhhhhhCC-CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHH
Q 015093 50 NLLRGIYA-YGFEK-PSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEK 126 (413)
Q Consensus 50 ~~~~~l~~-~~~~~-~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~ 126 (413)
.+.++|++ +|+.. -++.|.+++..+.++ +++.|++|||+||+++|.+|.+-. +...+|+.|..+|..++.+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------~gITIV~SPLiALIkDQiD 79 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------GGITIVISPLIALIKDQID 79 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------CCeEEEehHHHHHHHHHHH
Confidence 34455554 56654 578999999998886 579999999999999999988754 3378999999999998888
Q ss_pred HHHHhhcccCceEEEEECCcchHHHHHHH------hcCCcEEEeChHHHHHHH----HcCCCCCCCccEEEEccchhhhc
Q 015093 127 VMRALGDYMGVKVHACVGGTSVREDQRIL------SAGVHVVVGTPGRVFDML----RRQSLRPDYIRMFVLDEADEMLS 196 (413)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~Iii~T~~~l~~~~----~~~~~~~~~~~~iIiDE~h~~~~ 196 (413)
-+.++ .+.+..+....+..+..+++ .....+++.||++-.... .+.-..-.-++++|+||||....
T Consensus 80 HL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQ 155 (641)
T KOG0352|consen 80 HLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQ 155 (641)
T ss_pred HHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhh
Confidence 88776 33333333333333333332 234578999998653221 11111223378999999999876
Q ss_pred cC--cHHH---HHHHHhhCCCCceEEEEeeeCChhHHHHH--HHhcCCCEEEEecCCccccCCceEEEEEeC---ccccH
Q 015093 197 RG--FKDQ---IYDIFQHLPGKIQVGVFSATMPPEALEIT--RKFMNKPVRILVKRDELTLEGIKQFHVNVD---KEEWK 266 (413)
Q Consensus 197 ~~--~~~~---~~~~~~~~~~~~~~i~lSAT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 266 (413)
|+ |... +..+...++ ....+++|||.++.+.+.+ ..-+.+|+.+...+.... ..++... .-.+.
T Consensus 156 WGHDFRPDYL~LG~LRS~~~-~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~-----NLFYD~~~K~~I~D~ 229 (641)
T KOG0352|consen 156 WGHDFRPDYLTLGSLRSVCP-GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRD-----NLFYDNHMKSFITDC 229 (641)
T ss_pred hccccCcchhhhhhHHhhCC-CCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhh-----hhhHHHHHHHHhhhH
Confidence 54 3332 333444443 6779999999988766543 334455554443322111 0111000 00122
Q ss_pred HHHHHHHHHhc-------------CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEE
Q 015093 267 LDTLCDLYETL-------------AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVL 333 (413)
Q Consensus 267 ~~~l~~~~~~~-------------~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 333 (413)
+..|.++.... ..|-.||||.++++++.++-.|...|+++..||.++...+|-++.+.|-+++..|+
T Consensus 230 ~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI 309 (641)
T KOG0352|consen 230 LTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVI 309 (641)
T ss_pred hHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEE
Confidence 23333332211 12467999999999999999999999999999999999999999999999999999
Q ss_pred EEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHH
Q 015093 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 334 i~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 394 (413)
++|..+++|+|-|+++.||+++++.+...|-|-.||+||.|++.+|.++|+..|...+..+
T Consensus 310 ~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 310 AATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred EEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998877655
No 82
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.5e-32 Score=273.77 Aligned_cols=303 Identities=20% Similarity=0.274 Sum_probs=206.5
Q ss_pred cHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc----HHHHHHHHHHHHH-hhcccCce
Q 015093 64 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT----RELAQQIEKVMRA-LGDYMGVK 138 (413)
Q Consensus 64 ~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~----~~l~~q~~~~~~~-~~~~~~~~ 138 (413)
+.+..+.++++..++.++|+|+||||||..... ++..+.... ...+++.-|. ++++.+..+++.. ++. .
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq-~lle~g~g~-~g~I~~TQPRRlAArsLA~RVA~El~~~lG~----~ 149 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTTQLPK-ICLELGRGV-KGLIGHTQPRRLAARTVANRIAEELETELGG----C 149 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHH-HHHHcCCCC-CCceeeCCCcHHHHHHHHHHHHHHHhhhhcc----e
Confidence 444556777777788899999999999986432 332222221 2245555675 4666666666653 332 3
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchh-hhccCcHHH-HHHHHhhCCCCceE
Q 015093 139 VHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE-MLSRGFKDQ-IYDIFQHLPGKIQV 216 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~-~~~~~~~~~-~~~~~~~~~~~~~~ 216 (413)
+++...... .....+.|+++|++.|++.+..... ++.+++||+||||+ ..+.++... +..++... ++.++
T Consensus 150 VGY~vrf~~------~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~r-pdlKv 221 (1294)
T PRK11131 150 VGYKVRFND------QVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPRR-PDLKV 221 (1294)
T ss_pred eceeecCcc------ccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhcC-CCceE
Confidence 332221111 1134679999999999999876544 78899999999995 666665543 33333332 46799
Q ss_pred EEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCcc-----ccHHHHHHHHHH---hcCCCcEEEEEcC
Q 015093 217 GVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKE-----EWKLDTLCDLYE---TLAITQSVIFVNT 288 (413)
Q Consensus 217 i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~---~~~~~~~lIf~~~ 288 (413)
|++|||++. ..+.+.+.+.+. +.+..... .+...+...... ...+..+...+. ....+.+|||+++
T Consensus 222 ILmSATid~--e~fs~~F~~apv-I~V~Gr~~---pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg 295 (1294)
T PRK11131 222 IITSATIDP--ERFSRHFNNAPI-IEVSGRTY---PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSG 295 (1294)
T ss_pred EEeeCCCCH--HHHHHHcCCCCE-EEEcCccc---cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCC
Confidence 999999964 344444444443 33332221 233333333211 112233322222 2355789999999
Q ss_pred cccHHHHHHHHhhCCCe---eEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC---------
Q 015093 289 RRKVDWLTDQMRSRDHT---VSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL--------- 356 (413)
Q Consensus 289 ~~~a~~l~~~l~~~~~~---~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~--------- 356 (413)
..+++.+++.|.+.++. +..+||+++..+|.++++. .|..+|||||+++++|+|+|++++||+++.
T Consensus 296 ~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~ 373 (1294)
T PRK11131 296 EREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYR 373 (1294)
T ss_pred HHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccc
Confidence 99999999999987654 6789999999999998875 578899999999999999999999999862
Q ss_pred ---------CCChhHHHhhhcccCCCCCcceEEEEeccccHH
Q 015093 357 ---------PTQPENYLHRIGRSGRFGRKGVAINFVTRDDDR 389 (413)
Q Consensus 357 ---------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 389 (413)
+.|..+|.||+||+||. .+|.|+.+|++.+..
T Consensus 374 ~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 374 TKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred cCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 35668999999999998 689999999876543
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=1e-31 Score=262.37 Aligned_cols=315 Identities=20% Similarity=0.251 Sum_probs=217.5
Q ss_pred CCcHHHHhhhhhhhCC---CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCce
Q 015093 62 KPSAIQQRGIVPFCKG---LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVK 138 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~---~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~ 138 (413)
.|++.|.++++.+..+ +++++.++||||||.+++.++...+.. +.+++|++|+++|+.|+.+.+++.. +..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~f---g~~ 217 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARF---GAP 217 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCC
Confidence 6999999999999874 679999999999999998887776654 3489999999999999999998754 567
Q ss_pred EEEEECCcchHHHH----HHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCc-----H-HHHHHHHh
Q 015093 139 VHACVGGTSVREDQ----RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGF-----K-DQIYDIFQ 208 (413)
Q Consensus 139 ~~~~~~~~~~~~~~----~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~-----~-~~~~~~~~ 208 (413)
+..++++....... .......+|+|+|++.+. ..+.++++||+||+|....... . ..+ ...+
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v-a~~r 289 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL-AVVR 289 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHH-HHHH
Confidence 88888887654332 233456799999998764 3456789999999998653321 1 122 2333
Q ss_pred hCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCC--ccccCCceEEEEEe--Cc--cccHHHHHHHHHHhc--CCC
Q 015093 209 HLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD--ELTLEGIKQFHVNV--DK--EEWKLDTLCDLYETL--AIT 280 (413)
Q Consensus 209 ~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~--~~~ 280 (413)
....+.+++++||||+......... +.......... ....+.+....... .. ...-...+.+.+++. .++
T Consensus 290 a~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~ 367 (679)
T PRK05580 290 AKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGE 367 (679)
T ss_pred hhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCC
Confidence 4456789999999998554433322 22111111111 11122222211100 00 001112333333322 344
Q ss_pred cEEEEEcCcc------------------------------------------------------------cHHHHHHHHh
Q 015093 281 QSVIFVNTRR------------------------------------------------------------KVDWLTDQMR 300 (413)
Q Consensus 281 ~~lIf~~~~~------------------------------------------------------------~a~~l~~~l~ 300 (413)
+++||+|.+. .++.+.+.|+
T Consensus 368 qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~ 447 (679)
T PRK05580 368 QVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELA 447 (679)
T ss_pred eEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHH
Confidence 7888877531 3456666676
Q ss_pred hC--CCeeEeecCCCC--HHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCC--CC----------hhHHH
Q 015093 301 SR--DHTVSATHGDMD--QNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP--TQ----------PENYL 364 (413)
Q Consensus 301 ~~--~~~~~~~~~~~~--~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~--~s----------~~~~~ 364 (413)
+. +.++..+|+++. ..+++++++.|++|+.+|||+|++++.|+|+|+++.|+.++.. .+ ...|.
T Consensus 448 ~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~ 527 (679)
T PRK05580 448 ELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLT 527 (679)
T ss_pred HhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHH
Confidence 64 678889999886 4578999999999999999999999999999999999665443 22 25689
Q ss_pred hhhcccCCCCCcceEEEEeccccHHHHH
Q 015093 365 HRIGRSGRFGRKGVAINFVTRDDDRMLA 392 (413)
Q Consensus 365 Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 392 (413)
|++||+||.++.|.+++.....+...+.
T Consensus 528 q~~GRagR~~~~g~viiqT~~p~~~~~~ 555 (679)
T PRK05580 528 QVAGRAGRAEKPGEVLIQTYHPEHPVIQ 555 (679)
T ss_pred HHHhhccCCCCCCEEEEEeCCCCCHHHH
Confidence 9999999999999999988877655443
No 84
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.4e-33 Score=256.57 Aligned_cols=308 Identities=18% Similarity=0.254 Sum_probs=245.1
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
+|-|+|..++..+-.+.+++|.|.|.+|||.++-++|...+..++ ++++..|-++|-+|-++++..-.. .|++
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ---RVIYTSPIKALSNQKYREl~~EF~----DVGL 201 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ---RVIYTSPIKALSNQKYRELLEEFK----DVGL 201 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC---eEEeeChhhhhcchhHHHHHHHhc----ccce
Confidence 789999999999999999999999999999999999998887766 999999999999999999876443 3667
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEee
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSA 221 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (413)
.+|+.+ +.+++.-+|+|.+.|.+++.+++.-+..+..||+||+|.+.+..++-.|.+.+-.+|++.+.+++||
T Consensus 202 MTGDVT-------InP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSA 274 (1041)
T KOG0948|consen 202 MTGDVT-------INPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSA 274 (1041)
T ss_pred eeccee-------eCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEec
Confidence 777766 3456788999999999999998888888999999999999999888888898999999999999999
Q ss_pred eCChhHHHHHHHhc---CCCEEEEecCCccccCCceEEEEEe---------Ccc----cc--------------------
Q 015093 222 TMPPEALEITRKFM---NKPVRILVKRDELTLEGIKQFHVNV---------DKE----EW-------------------- 265 (413)
Q Consensus 222 T~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~----~~-------------------- 265 (413)
|+++ ..+++.+.+ ..|+++. +.++++..++++.+.. +.. ++
T Consensus 275 TiPN-A~qFAeWI~~ihkQPcHVV--YTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~ 351 (1041)
T KOG0948|consen 275 TIPN-ARQFAEWICHIHKQPCHVV--YTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKK 351 (1041)
T ss_pred cCCC-HHHHHHHHHHHhcCCceEE--eecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccc
Confidence 9975 445555544 4555443 3444444555543321 110 00
Q ss_pred ------------------HHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCC------------------------
Q 015093 266 ------------------KLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRD------------------------ 303 (413)
Q Consensus 266 ------------------~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~------------------------ 303 (413)
.+-.+...+-.....|++||+-|+++|+.++-.+.+.+
T Consensus 352 ~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~Lsee 431 (1041)
T KOG0948|consen 352 ANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEE 431 (1041)
T ss_pred cccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChh
Confidence 12233333334455689999999999999999887542
Q ss_pred ---------------CeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEc----CC----CCCh
Q 015093 304 ---------------HTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY----DL----PTQP 360 (413)
Q Consensus 304 ---------------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~----~~----~~s~ 360 (413)
..+.++||++-+--++.+.-.|++|-+++|+||.+++.|+|+|.-.+|+-. +. -.|.
T Consensus 432 Dr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwiss 511 (1041)
T KOG0948|consen 432 DRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISS 511 (1041)
T ss_pred hccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecc
Confidence 237889999999999999999999999999999999999999976665531 11 1367
Q ss_pred hHHHhhhcccCCCCCc--ceEEEEeccc
Q 015093 361 ENYLHRIGRSGRFGRK--GVAINFVTRD 386 (413)
Q Consensus 361 ~~~~Q~~GR~~R~g~~--g~~~~~~~~~ 386 (413)
.+|+||.||+||.|.+ |.|++++++.
T Consensus 512 GEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 512 GEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cceEEecccccccCCCCCceEEEEecCc
Confidence 7999999999999964 8899998875
No 85
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.6e-31 Score=247.73 Aligned_cols=306 Identities=20% Similarity=0.284 Sum_probs=203.0
Q ss_pred EEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHH----HHHHh
Q 015093 81 IQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVRED----QRILS 156 (413)
Q Consensus 81 lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 156 (413)
|+.||||||||.+++..+...+.. +.+++|++|+++|+.|+.+.+++.. +..+..++++...... .....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHc
Confidence 578999999999998776665543 3489999999999999999998754 5567788877654432 23334
Q ss_pred cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC-----cHHHHHHHHhhCCCCceEEEEeeeCChhHHHHH
Q 015093 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-----FKDQIYDIFQHLPGKIQVGVFSATMPPEALEIT 231 (413)
Q Consensus 157 ~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-----~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~ 231 (413)
...+|+|+|++.+. ..+.++++||+||.|....+. +...-...++....+.+++++||||+.+.....
T Consensus 75 g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~ 147 (505)
T TIGR00595 75 GEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNA 147 (505)
T ss_pred CCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHH
Confidence 56799999998774 245678999999999865322 111111223333457889999999875443332
Q ss_pred HHhcCCCEEEEec--CCccccCCceEEEEEeCccc---cHHHHHHHHHHhc--CCCcEEEEEcCccc-------------
Q 015093 232 RKFMNKPVRILVK--RDELTLEGIKQFHVNVDKEE---WKLDTLCDLYETL--AITQSVIFVNTRRK------------- 291 (413)
Q Consensus 232 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~--~~~~~lIf~~~~~~------------- 291 (413)
. .+........ ......+.+... ...... .....+.+.+++. .++++|||+|++..
T Consensus 148 ~--~g~~~~~~l~~r~~~~~~p~v~vi--d~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~ 223 (505)
T TIGR00595 148 K--QKAYRLLVLTRRVSGRKPPEVKLI--DMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYIL 223 (505)
T ss_pred h--cCCeEEeechhhhcCCCCCeEEEE--ecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCcc
Confidence 2 1221111111 111112222221 121111 1123344444332 34589999776532
Q ss_pred -----------------------------------------------HHHHHHHHhhC--CCeeEeecCCCCHHHH--HH
Q 015093 292 -----------------------------------------------VDWLTDQMRSR--DHTVSATHGDMDQNSR--DI 320 (413)
Q Consensus 292 -----------------------------------------------a~~l~~~l~~~--~~~~~~~~~~~~~~~r--~~ 320 (413)
.+.+.+.|++. +.++..+|++++...+ ++
T Consensus 224 ~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~ 303 (505)
T TIGR00595 224 CCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEA 303 (505)
T ss_pred CCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHH
Confidence 46777777765 6788899999876655 88
Q ss_pred HHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCC------------ChhHHHhhhcccCCCCCcceEEEEeccccH
Q 015093 321 IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------------QPENYLHRIGRSGRFGRKGVAINFVTRDDD 388 (413)
Q Consensus 321 ~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~------------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 388 (413)
+++.|++|+.+|||+|++++.|+|+|+++.|+.++... ....+.|++||+||.++.|.+++.....+.
T Consensus 304 ~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 304 LLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred HHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 99999999999999999999999999999986554321 235689999999999999999987766655
Q ss_pred HHHH-----HHHHHhccccc
Q 015093 389 RMLA-----DIQRFYNVVIE 403 (413)
Q Consensus 389 ~~~~-----~~~~~~~~~~~ 403 (413)
..+. ++..|++...+
T Consensus 384 ~~~~~~~~~d~~~f~~~el~ 403 (505)
T TIGR00595 384 PAIQAALTGDYEAFYEQELA 403 (505)
T ss_pred HHHHHHHhCCHHHHHHHHHH
Confidence 4333 34556655443
No 86
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=2.2e-30 Score=254.78 Aligned_cols=310 Identities=16% Similarity=0.164 Sum_probs=201.6
Q ss_pred CCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhccc--Cc
Q 015093 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM--GV 137 (413)
Q Consensus 60 ~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~--~~ 137 (413)
...|+|+|..+......++.++|.+|||+|||.+++.++...+.. ....+++|..||++.++|++++++++.... ..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~-~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~ 362 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-GLADSIIFALPTQATANAMLSRLEALASKLFPSP 362 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 348999999886544446679999999999999998776654433 334589999999999999999987644322 34
Q ss_pred eEEEEECCcchHHHH---------------------HHHh------cCCcEEEeChHHHHHHHHcCC------CCCCCcc
Q 015093 138 KVHACVGGTSVREDQ---------------------RILS------AGVHVVVGTPGRVFDMLRRQS------LRPDYIR 184 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~---------------------~~~~------~~~~Iii~T~~~l~~~~~~~~------~~~~~~~ 184 (413)
++.+.+|........ ..+. --.+|+|+|.++++....... +.+. -+
T Consensus 363 ~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La-~s 441 (878)
T PRK09694 363 NLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG-RS 441 (878)
T ss_pred ceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc-cC
Confidence 566666654311100 0011 125899999999885443221 1122 26
Q ss_pred EEEEccchhhhccCcHHHHHHHHhhCC-CCceEEEEeeeCChhHHHHHHHhcCCC--EE----E--E--ecC---Ccc--
Q 015093 185 MFVLDEADEMLSRGFKDQIYDIFQHLP-GKIQVGVFSATMPPEALEITRKFMNKP--VR----I--L--VKR---DEL-- 248 (413)
Q Consensus 185 ~iIiDE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~lSAT~~~~~~~~~~~~~~~~--~~----~--~--~~~---~~~-- 248 (413)
+||+||+|.+ +......+..+++... ...++|+||||++......+...++.. .. + . ... ...
T Consensus 442 vvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~ 520 (878)
T PRK09694 442 VLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDL 520 (878)
T ss_pred eEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeec
Confidence 8999999975 3323344555555432 356799999999877665443322211 00 0 0 000 000
Q ss_pred --cc---CCceEEEE-Ee--CccccHHHHHHHHHHh-cCCCcEEEEEcCcccHHHHHHHHhhCC---CeeEeecCCCCHH
Q 015093 249 --TL---EGIKQFHV-NV--DKEEWKLDTLCDLYET-LAITQSVIFVNTRRKVDWLTDQMRSRD---HTVSATHGDMDQN 316 (413)
Q Consensus 249 --~~---~~~~~~~~-~~--~~~~~~~~~l~~~~~~-~~~~~~lIf~~~~~~a~~l~~~l~~~~---~~~~~~~~~~~~~ 316 (413)
.. +.-..... .. .........+..+++. ..+++++||||+++.|+.+++.|++.+ .++..+||.++..
T Consensus 521 ~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~ 600 (878)
T PRK09694 521 SAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLN 600 (878)
T ss_pred cccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHH
Confidence 00 00001111 01 1101112333444443 245689999999999999999999764 5799999999999
Q ss_pred HHH----HHHHHH-hcCC---CeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCC
Q 015093 317 SRD----IIMREF-RSGS---SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGR 375 (413)
Q Consensus 317 ~r~----~~~~~f-~~~~---~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~ 375 (413)
+|. ++++.| ++|+ ..|||+|++++.|+|+ +++.+|....| ...++||+||++|++.
T Consensus 601 dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 601 DRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 884 556777 5565 4799999999999999 57888876665 6799999999999875
No 87
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=6.3e-31 Score=247.48 Aligned_cols=312 Identities=18% Similarity=0.249 Sum_probs=234.4
Q ss_pred hCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 57 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
.++| +|-.+|++|+.++.+|.+++|.|+|.+|||+++-++|.-.- .+ +.+++|..|-++|-+|-++.|+.-...
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq--~h-~TR~iYTSPIKALSNQKfRDFk~tF~D-- 366 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ--KH-MTRTIYTSPIKALSNQKFRDFKETFGD-- 366 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH--hh-ccceEecchhhhhccchHHHHHHhccc--
Confidence 3444 79999999999999999999999999999999987775432 22 449999999999999999999886543
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceE
Q 015093 137 VKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQV 216 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 216 (413)
+++++|+.. +.+.+.++|+|.+.|.+++.+..-..+++..||+||+|.+-+..++-.|.+++-.+|...++
T Consensus 367 --vgLlTGDvq-------inPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~ 437 (1248)
T KOG0947|consen 367 --VGLLTGDVQ-------INPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNF 437 (1248)
T ss_pred --cceeeccee-------eCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceE
Confidence 337888776 34568899999999999999988888889999999999988888889999999999999999
Q ss_pred EEEeeeCChhHHH--HHHHhcCCCEEEEecCCccccCCceEEEEEe----------------------------------
Q 015093 217 GVFSATMPPEALE--ITRKFMNKPVRILVKRDELTLEGIKQFHVNV---------------------------------- 260 (413)
Q Consensus 217 i~lSAT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 260 (413)
|++|||.++..+. ++-+.-+..+.+... ..++-.+.++...-
T Consensus 438 IlLSATVPN~~EFA~WIGRtK~K~IyViST--~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~ 515 (1248)
T KOG0947|consen 438 ILLSATVPNTLEFADWIGRTKQKTIYVIST--SKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDV 515 (1248)
T ss_pred EEEeccCCChHHHHHHhhhccCceEEEEec--CCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccc
Confidence 9999999865432 222222222222211 11111111111000
Q ss_pred ------------------C--cc----------cc---HHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCC----
Q 015093 261 ------------------D--KE----------EW---KLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRD---- 303 (413)
Q Consensus 261 ------------------~--~~----------~~---~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~---- 303 (413)
. .. .. .+..+...+.....-|+++||-|++.|+..++.|...+
T Consensus 516 ~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~ 595 (1248)
T KOG0947|consen 516 EKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDS 595 (1248)
T ss_pred ccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccc
Confidence 0 00 00 12233333444444589999999999999999996431
Q ss_pred -----------------------------------CeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCC
Q 015093 304 -----------------------------------HTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348 (413)
Q Consensus 304 -----------------------------------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 348 (413)
-.+.++||++-+--++-++..|..|-++||+||.++++|+|+|.-
T Consensus 596 ~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPAR 675 (1248)
T KOG0947|consen 596 KEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPAR 675 (1248)
T ss_pred hhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCce
Confidence 247889999999999999999999999999999999999999866
Q ss_pred CEEEEcCC---------CCChhHHHhhhcccCCCCCc--ceEEEEeccc
Q 015093 349 SLVINYDL---------PTQPENYLHRIGRSGRFGRK--GVAINFVTRD 386 (413)
Q Consensus 349 ~~vi~~~~---------~~s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~ 386 (413)
.+|+. +. ...+.+|.||+||+||.|-+ |.+++++...
T Consensus 676 tvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 676 TVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred eEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 55553 22 24789999999999999864 7777776654
No 88
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=6.7e-31 Score=222.58 Aligned_cols=200 Identities=53% Similarity=0.796 Sum_probs=180.3
Q ss_pred ccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc--cCceeEEEEcccHH
Q 015093 42 FDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE--SLQCQALVLAPTRE 119 (413)
Q Consensus 42 ~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~--~~~~~~lvl~P~~~ 119 (413)
|+++++++.+.+.+...++..|+++|.++++.+.+++++++++|||+|||+++++++++.+... ..+++++|++|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 6788999999999999999999999999999999999999999999999999999999888776 45679999999999
Q ss_pred HHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCc
Q 015093 120 LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGF 199 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~ 199 (413)
|+.|+.+.++++....+..+..+.|+............+++|+|+|++.+...+......+.+++++|+||+|.+.+..+
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~ 160 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGF 160 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccCh
Confidence 99999999999988778888999998887666666666789999999999999988777778899999999999888888
Q ss_pred HHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEE
Q 015093 200 KDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRI 241 (413)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~ 241 (413)
...+..+.+.++..++++++|||+++........++.+++.+
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 161 EDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 889999999998899999999999998888888888877654
No 89
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=100.00 E-value=7.5e-31 Score=265.28 Aligned_cols=302 Identities=19% Similarity=0.232 Sum_probs=197.2
Q ss_pred CCcHHHHhhhhhhhC----C-CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 62 KPSAIQQRGIVPFCK----G-LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~----~-~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
.||+||.+|++++.+ + +++++++|||||||.+++..+...+.. ....++||++|+.+|+.|+.+.+..+.....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~-~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA-KRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc-CccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 699999999987753 3 569999999999999876555444333 3345999999999999999999988643222
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC-----CCCCCCccEEEEccchhhhcc--------------
Q 015093 137 VKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ-----SLRPDYIRMFVLDEADEMLSR-------------- 197 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~-----~~~~~~~~~iIiDE~h~~~~~-------------- 197 (413)
.......+... ...........|+|+|+++|.+.+... ......+++||+||||+....
T Consensus 492 ~~~~~i~~i~~--L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 492 QTFASIYDIKG--LEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred cchhhhhchhh--hhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchh
Confidence 11111111000 011112335789999999998765321 134567899999999996321
Q ss_pred -CcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecC-----Cccc-------------cCCce----
Q 015093 198 -GFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKR-----DELT-------------LEGIK---- 254 (413)
Q Consensus 198 -~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-------------~~~~~---- 254 (413)
.+...+.+++..+. ..++||||||..... .+++.++..+... +... ..++.
T Consensus 570 ~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~----~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~ 643 (1123)
T PRK11448 570 LDYVSKYRRVLDYFD--AVKIGLTATPALHTT----EIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKG 643 (1123)
T ss_pred hhHHHHHHHHHhhcC--ccEEEEecCCccchh----HHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccccccc
Confidence 12356677777653 468999999974332 2333333211110 0000 00000
Q ss_pred -----------EEE-EEeCc----c----------ccHH----HHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhC--
Q 015093 255 -----------QFH-VNVDK----E----------EWKL----DTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSR-- 302 (413)
Q Consensus 255 -----------~~~-~~~~~----~----------~~~~----~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~-- 302 (413)
... ...+. . +... ..+...+.....+|+||||.++++|+.+++.|.+.
T Consensus 644 e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~ 723 (1123)
T PRK11448 644 EEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFK 723 (1123)
T ss_pred chhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHH
Confidence 000 00000 0 0001 11122222223479999999999999999887653
Q ss_pred ----C---CeeEeecCCCCHHHHHHHHHHHhcCCC-eEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCC
Q 015093 303 ----D---HTVSATHGDMDQNSRDIIMREFRSGSS-RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG 374 (413)
Q Consensus 303 ----~---~~~~~~~~~~~~~~r~~~~~~f~~~~~-~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 374 (413)
+ ..+..++|+.+ ++.++++.|+++.. .|+|+++++.+|+|+|.+.+||+++++.|...|+||+||+.|.-
T Consensus 724 ~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 724 KKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred hhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 1 24556888875 46789999999887 58999999999999999999999999999999999999999964
No 90
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=5.1e-31 Score=265.28 Aligned_cols=304 Identities=19% Similarity=0.263 Sum_probs=208.1
Q ss_pred HHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH-hhcccCceEEEEECC
Q 015093 67 QQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA-LGDYMGVKVHACVGG 145 (413)
Q Consensus 67 Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~-~~~~~~~~~~~~~~~ 145 (413)
..+.+..+..++.++|+|+||||||......+++. ... ...++++.-|.+--+...++.+.+ ++...|..+++....
T Consensus 72 ~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~-~~~-~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~ 149 (1283)
T TIGR01967 72 REDIAEAIAENQVVIIAGETGSGKTTQLPKICLEL-GRG-SHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRF 149 (1283)
T ss_pred HHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHc-CCC-CCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcC
Confidence 35677777777889999999999998754444432 111 223677778888766666655543 333334444443222
Q ss_pred cchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchh-hhccCcHHH-HHHHHhhCCCCceEEEEeeeC
Q 015093 146 TSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE-MLSRGFKDQ-IYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 146 ~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~-~~~~~~~~~-~~~~~~~~~~~~~~i~lSAT~ 223 (413)
... ......|.++|++.|+..+..... +..+++||+||+|+ ..+.++... +..++... ++.++|+||||+
T Consensus 150 ~~~------~s~~T~I~~~TdGiLLr~l~~d~~-L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKlIlmSATl 221 (1283)
T TIGR01967 150 HDQ------VSSNTLVKLMTDGILLAETQQDRF-LSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKIIITSATI 221 (1283)
T ss_pred Ccc------cCCCceeeeccccHHHHHhhhCcc-cccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeEEEEeCCc
Confidence 211 234578999999999998876543 67799999999995 666666544 45554444 478999999999
Q ss_pred ChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCcc-----ccHHHHHHHHHH---hcCCCcEEEEEcCcccHHHH
Q 015093 224 PPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKE-----EWKLDTLCDLYE---TLAITQSVIFVNTRRKVDWL 295 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~---~~~~~~~lIf~~~~~~a~~l 295 (413)
.. ..+...+...++ +.+..... .+...+...... ......+...+. ....+.+|||+++..+++.+
T Consensus 222 d~--~~fa~~F~~apv-I~V~Gr~~---PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l 295 (1283)
T TIGR01967 222 DP--ERFSRHFNNAPI-IEVSGRTY---PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDA 295 (1283)
T ss_pred CH--HHHHHHhcCCCE-EEECCCcc---cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHH
Confidence 64 344444433443 33322221 122222222110 122233333222 12458999999999999999
Q ss_pred HHHHhhCC---CeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC----------------
Q 015093 296 TDQMRSRD---HTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL---------------- 356 (413)
Q Consensus 296 ~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~---------------- 356 (413)
++.|.+.+ ..+..+||+++..+|.++++.+ +..+||+||+++++|+|+|++++||+.+.
T Consensus 296 ~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~ 373 (1283)
T TIGR01967 296 AEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLP 373 (1283)
T ss_pred HHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccC
Confidence 99998764 4588899999999999886543 34689999999999999999999999874
Q ss_pred --CCChhHHHhhhcccCCCCCcceEEEEeccccHH
Q 015093 357 --PTQPENYLHRIGRSGRFGRKGVAINFVTRDDDR 389 (413)
Q Consensus 357 --~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 389 (413)
+.|..++.||.||+||.+ +|.|+.+|++.+..
T Consensus 374 ~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 374 IEPISQASANQRKGRCGRVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred CccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHH
Confidence 347789999999999997 89999999876543
No 91
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.98 E-value=6.2e-30 Score=215.66 Aligned_cols=319 Identities=17% Similarity=0.180 Sum_probs=226.6
Q ss_pred CCcHHHHhhhhhhh----CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 62 KPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~----~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
+|++.|+.+-..+. +.++.+|+|-||+|||......+-..+.. |.++.+.+|+...+.+.+.++++... +.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~---G~~vciASPRvDVclEl~~Rlk~aF~--~~ 171 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ---GGRVCIASPRVDVCLELYPRLKQAFS--NC 171 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc---CCeEEEecCcccchHHHHHHHHHhhc--cC
Confidence 78899998776654 46789999999999998865555555444 44999999999999999999988654 56
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEE
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVG 217 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i 217 (413)
.+..++|+..... ..+++|+|.+.|++.... ++++|+||+|-+....-......+.......-..|
T Consensus 172 ~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~a-------FD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~I 237 (441)
T COG4098 172 DIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQA-------FDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATI 237 (441)
T ss_pred CeeeEecCCchhc-------cccEEEEehHHHHHHHhh-------ccEEEEeccccccccCCHHHHHHHHHhhcccCceE
Confidence 7778888776332 268999999998876554 78999999998764443444445555555566789
Q ss_pred EEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCc----cccHH-HHHHHHHHhc--CCCcEEEEEcCcc
Q 015093 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDK----EEWKL-DTLCDLYETL--AITQSVIFVNTRR 290 (413)
Q Consensus 218 ~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~l~~~~~~~--~~~~~lIf~~~~~ 290 (413)
++||||+..+...+...-.....+.-..-....+- ..+....+- ...++ ..+...+++. .+.+++||+++++
T Consensus 238 ylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpv-Pkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~ 316 (441)
T COG4098 238 YLTATPTKKLERKILKGNLRILKLPARFHGKPLPV-PKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIE 316 (441)
T ss_pred EEecCChHHHHHHhhhCCeeEeecchhhcCCCCCC-CceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchH
Confidence 99999987655433322111111111111111111 111111111 01112 2566666655 4479999999999
Q ss_pred cHHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCC--CChhHHHhh
Q 015093 291 KVDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP--TQPENYLHR 366 (413)
Q Consensus 291 ~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~--~s~~~~~Q~ 366 (413)
.++.++..|++. ...+..+|+. +..|.+..+.|++|+.++||+|.++++|+.+|++++.|+-.-. .+.+.++|.
T Consensus 317 ~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQI 394 (441)
T COG4098 317 TMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQI 394 (441)
T ss_pred HHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHH
Confidence 999999999653 2345677776 3468899999999999999999999999999999998875433 788999999
Q ss_pred hcccCCCC--CcceEEEEeccccHHHHHHHHHHhcccc
Q 015093 367 IGRSGRFG--RKGVAINFVTRDDDRMLADIQRFYNVVI 402 (413)
Q Consensus 367 ~GR~~R~g--~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (413)
.||+||.- ..|.+..|.......+.....+.-+...
T Consensus 395 aGRvGRs~~~PtGdv~FFH~G~skaM~~A~keIk~MN~ 432 (441)
T COG4098 395 AGRVGRSLERPTGDVLFFHYGKSKAMKQARKEIKEMNK 432 (441)
T ss_pred hhhccCCCcCCCCcEEEEeccchHHHHHHHHHHHHHHH
Confidence 99999963 4689999888888888877765544433
No 92
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=3.5e-30 Score=251.10 Aligned_cols=317 Identities=20% Similarity=0.252 Sum_probs=240.8
Q ss_pred HHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 54 GIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 54 ~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
.....+| +|.++|++++..+..+.+++|++|||+|||+++.+++...+..++ +++|++|.++|.+|.++++.....
T Consensus 112 ~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q---rviYTsPIKALsNQKyrdl~~~fg 187 (1041)
T COG4581 112 PAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQ---RVIYTSPIKALSNQKYRDLLAKFG 187 (1041)
T ss_pred HHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCC---ceEeccchhhhhhhHHHHHHHHhh
Confidence 3344565 799999999999999999999999999999999999888776655 799999999999999988866443
Q ss_pred ccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCC
Q 015093 134 YMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGK 213 (413)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~ 213 (413)
.....+++++|+.+ +++++.++|+|.+.|.+++.+....+..+..||+||+|.+.+...+..|..++-.+|..
T Consensus 188 dv~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~ 260 (1041)
T COG4581 188 DVADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDH 260 (1041)
T ss_pred hhhhhccceeccee-------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCC
Confidence 22345688888876 35668999999999999999998888889999999999999999999999999999999
Q ss_pred ceEEEEeeeCChhHHHHHHHhc---CCCEEEEecCCccccCCceEEEEEe-------Cccc-------------------
Q 015093 214 IQVGVFSATMPPEALEITRKFM---NKPVRILVKRDELTLEGIKQFHVNV-------DKEE------------------- 264 (413)
Q Consensus 214 ~~~i~lSAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~------------------- 264 (413)
.++++||||.++.. ++..++. ..+..+... +..+..+.+++... +...
T Consensus 261 v~~v~LSATv~N~~-EF~~Wi~~~~~~~~~vv~t--~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~ 337 (1041)
T COG4581 261 VRFVFLSATVPNAE-EFAEWIQRVHSQPIHVVST--EHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSE 337 (1041)
T ss_pred CcEEEEeCCCCCHH-HHHHHHHhccCCCeEEEee--cCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccch
Confidence 99999999998643 3333222 334433322 22222222222111 0000
Q ss_pred ---------------------------cHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhC---------------
Q 015093 265 ---------------------------WKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSR--------------- 302 (413)
Q Consensus 265 ---------------------------~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~--------------- 302 (413)
.....+...+.....-++++|+-++..|+..+..+...
T Consensus 338 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~i 417 (1041)
T COG4581 338 KVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREI 417 (1041)
T ss_pred hccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHH
Confidence 00112333333344458999999999999888877521
Q ss_pred -------------CC-------------eeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcC-
Q 015093 303 -------------DH-------------TVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD- 355 (413)
Q Consensus 303 -------------~~-------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~- 355 (413)
+. .+.++|+++=+..+..+...|..|-++|+++|.+++.|+|+|.-++|+ ..
T Consensus 418 i~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l 496 (1041)
T COG4581 418 IDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSL 496 (1041)
T ss_pred HHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eee
Confidence 11 255889999999999999999999999999999999999998666554 22
Q ss_pred --------CCCChhHHHhhhcccCCCCCc--ceEEEEecc
Q 015093 356 --------LPTQPENYLHRIGRSGRFGRK--GVAINFVTR 385 (413)
Q Consensus 356 --------~~~s~~~~~Q~~GR~~R~g~~--g~~~~~~~~ 385 (413)
...++.+|.|+.||+||.|.+ |.++++..+
T Consensus 497 ~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 497 SKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred EEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 245889999999999999975 777776443
No 93
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.1e-29 Score=244.75 Aligned_cols=317 Identities=18% Similarity=0.230 Sum_probs=230.9
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.|++.|.-.--.+..|+ +..++||+|||+++.+|++..+..+ ..++|++|+..|+.|.++.+..+...+++++.+
T Consensus 82 ~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G---~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~ 156 (896)
T PRK13104 82 RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISG---RGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGV 156 (896)
T ss_pred CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcC---CCEEEEcCCHHHHHHHHHHHHHHhcccCceEEE
Confidence 78888888777765555 9999999999999999998665543 369999999999999999999999999999999
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcC-CCCC-----CCccEEEEccchhhh-ccC---------------
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRV-FDMLRRQ-SLRP-----DYIRMFVLDEADEML-SRG--------------- 198 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~-~~~~-----~~~~~iIiDE~h~~~-~~~--------------- 198 (413)
+.|+......... -.++|+++||+.| +++++.. .+.+ ..+.++|+||+|.++ +..
T Consensus 157 i~gg~~~~~r~~~--y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~ 234 (896)
T PRK13104 157 IYPDMSHKEKQEA--YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDSSE 234 (896)
T ss_pred EeCCCCHHHHHHH--hCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCccchH
Confidence 9999876555433 3589999999999 8888765 3333 468999999999754 210
Q ss_pred cHHHHHHHHhhCCC--------------C---------------------------------------------------
Q 015093 199 FKDQIYDIFQHLPG--------------K--------------------------------------------------- 213 (413)
Q Consensus 199 ~~~~~~~~~~~~~~--------------~--------------------------------------------------- 213 (413)
....+..+...+.. .
T Consensus 235 ~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~l 314 (896)
T PRK13104 235 LYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAM 314 (896)
T ss_pred HHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHHHH
Confidence 00000000000000 0
Q ss_pred -----------------------------------------------------------------ceEEEEeeeCChhHH
Q 015093 214 -----------------------------------------------------------------IQVGVFSATMPPEAL 228 (413)
Q Consensus 214 -----------------------------------------------------------------~~~i~lSAT~~~~~~ 228 (413)
.++-+||+|......
T Consensus 315 f~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~ 394 (896)
T PRK13104 315 FHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAY 394 (896)
T ss_pred hcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHH
Confidence 245566666654444
Q ss_pred HHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCee
Q 015093 229 EITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTV 306 (413)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~ 306 (413)
++...|....+.+.. ..+........ ..+.....+..++...+... .+.|+||||+|++.++.+++.|++.|+++
T Consensus 395 Ef~~iY~l~Vv~IPt-nkp~~R~d~~d--~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h 471 (896)
T PRK13104 395 EFQQIYNLEVVVIPT-NRSMIRKDEAD--LVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKH 471 (896)
T ss_pred HHHHHhCCCEEECCC-CCCcceecCCC--eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCe
Confidence 443333333222222 11111111111 12223345666666555332 66799999999999999999999999999
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCC--------------------------------------C
Q 015093 307 SATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQ--------------------------------------V 348 (413)
Q Consensus 307 ~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~--------------------------------------~ 348 (413)
..+|+++...++..+.+.|+.|. |+|||+++++|+|+.= =
T Consensus 472 ~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 549 (896)
T PRK13104 472 QVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGG 549 (896)
T ss_pred EeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCC
Confidence 99999999999999999999995 9999999999999851 2
Q ss_pred CEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 349 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 349 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
-+||-...+.|...-.|..||+||.|.||.+.+|++-.|.-+
T Consensus 550 L~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~ 591 (896)
T PRK13104 550 LRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLM 591 (896)
T ss_pred CEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 357777778888888999999999999999999999877544
No 94
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=3.5e-30 Score=248.19 Aligned_cols=338 Identities=19% Similarity=0.278 Sum_probs=241.1
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCC-CcEEEeCCCCCchhHHHHHHHHHhccccc--------CceeEEEEcc
Q 015093 46 GLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYES--------LQCQALVLAP 116 (413)
Q Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~i~~~l~~~~--------~~~~~lvl~P 116 (413)
.++.+-..++. |..++.++|.....+.+.+ .++++|||||+|||..+++.+++.+.... ...++++++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 34555555544 4456999999999998776 56999999999999999999999885432 1348999999
Q ss_pred cHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCC--CCCCccEEEEccchhh
Q 015093 117 TRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL--RPDYIRMFVLDEADEM 194 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~--~~~~~~~iIiDE~h~~ 194 (413)
.++|++.|...+.+....++++|.-.+|+....... -...+|+++||+.+.-.-++.+- ..+.++++|+||+|.+
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhc
Confidence 999999999999999999999999999987633322 23579999999998654444221 1334789999999966
Q ss_pred hccCcHHHHHHHHhhC-------CCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCcc--cc
Q 015093 195 LSRGFKDQIYDIFQHL-------PGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKE--EW 265 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~-------~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 265 (413)
.+ +++..+..+..+. ...++++++|||+++... ....+..++.........+++-.+.+.+.-+... ..
T Consensus 450 hD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~D-V~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~ 527 (1674)
T KOG0951|consen 450 HD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYED-VASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLK 527 (1674)
T ss_pred cc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhh-hHHHhccCcccccccCcccCcCCccceEeccccCCchH
Confidence 43 3455554443332 237899999999986433 2222222233333333445555555544433221 11
Q ss_pred HH-----HHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhC-------------------------------------C
Q 015093 266 KL-----DTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSR-------------------------------------D 303 (413)
Q Consensus 266 ~~-----~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~-------------------------------------~ 303 (413)
.. .....+++....+++|||+-|++++...++.++.. -
T Consensus 528 ~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLp 607 (1674)
T KOG0951|consen 528 RFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLP 607 (1674)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhh
Confidence 11 22334455556689999999999888888777621 2
Q ss_pred CeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE----cCC------CCChhHHHhhhcccCCC
Q 015093 304 HTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YDL------PTQPENYLHRIGRSGRF 373 (413)
Q Consensus 304 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~~------~~s~~~~~Q~~GR~~R~ 373 (413)
+....+|++|++.+|...++.|.+|+++|+++|..+++|+|+|.-.++|- +++ +.|+.+..||+||+||.
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp 687 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRP 687 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCC
Confidence 56889999999999999999999999999999999999999997666653 222 45889999999999997
Q ss_pred CC--cceEEEEeccccHHH
Q 015093 374 GR--KGVAINFVTRDDDRM 390 (413)
Q Consensus 374 g~--~g~~~~~~~~~~~~~ 390 (413)
+- .|..+++....+...
T Consensus 688 ~~D~~gegiiit~~se~qy 706 (1674)
T KOG0951|consen 688 QYDTCGEGIIITDHSELQY 706 (1674)
T ss_pred ccCcCCceeeccCchHhhh
Confidence 53 466776666655443
No 95
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=1.4e-28 Score=240.22 Aligned_cols=316 Identities=20% Similarity=0.256 Sum_probs=245.3
Q ss_pred HHHHHHHhCCCCCCcHHHHhhhhhhhC----C--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHH
Q 015093 50 NLLRGIYAYGFEKPSAIQQRGIVPFCK----G--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQ 123 (413)
Q Consensus 50 ~~~~~l~~~~~~~~~~~Q~~~~~~~~~----~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q 123 (413)
+..+....++| +-|+-|..|++.+.+ + -|-+|||..|.|||.+++-+++.....+ +.+.|+|||.-|++|
T Consensus 583 ~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G---KQVAvLVPTTlLA~Q 658 (1139)
T COG1197 583 WQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG---KQVAVLVPTTLLAQQ 658 (1139)
T ss_pred HHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC---CeEEEEcccHHhHHH
Confidence 33444445666 689999999998865 2 3689999999999999988887766554 599999999999999
Q ss_pred HHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCc
Q 015093 124 IEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGF 199 (413)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~ 199 (413)
.++.++.....+++++..++.=.+.+.....+ .+..||+|+|.. +..+...+.+++++||||=|++.-..
T Consensus 659 Hy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr-----LL~kdv~FkdLGLlIIDEEqRFGVk~- 732 (1139)
T COG1197 659 HYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR-----LLSKDVKFKDLGLLIIDEEQRFGVKH- 732 (1139)
T ss_pred HHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH-----hhCCCcEEecCCeEEEechhhcCccH-
Confidence 99999999999999999988766655554433 457899999944 44566677889999999999975432
Q ss_pred HHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHH-HHHh-c
Q 015093 200 KDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCD-LYET-L 277 (413)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~-~ 277 (413)
. +-++.+..+.-++-|||||.|....+......+.-.+...+.. ...++.+....+. ..+.+ ++++ .
T Consensus 733 K----EkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~--R~pV~T~V~~~d~-----~~ireAI~REl~ 801 (1139)
T COG1197 733 K----EKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPED--RLPVKTFVSEYDD-----LLIREAILRELL 801 (1139)
T ss_pred H----HHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCC--CcceEEEEecCCh-----HHHHHHHHHHHh
Confidence 2 3445555677899999999988777766665554433333222 2233333333332 12222 2222 2
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 355 (413)
.+|.+--.+|.++..+.+++.|++. ...+.+.||.|+..+-++++..|.+|+.+||+||.+.+.|+|+|+++++|+-+
T Consensus 802 RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~ 881 (1139)
T COG1197 802 RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIER 881 (1139)
T ss_pred cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEec
Confidence 5688999999999999999999886 56789999999999999999999999999999999999999999999998765
Q ss_pred CC-CChhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 356 LP-TQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 356 ~~-~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
.. +..+++-|.-||+||.++.++||+++.+.
T Consensus 882 AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 882 ADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred cccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 43 56789999999999999999999999864
No 96
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.2e-28 Score=237.45 Aligned_cols=316 Identities=19% Similarity=0.221 Sum_probs=236.9
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHH-HhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL-QQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVH 140 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~-~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
.|++.|.-+.-.+..|+ +..+.||+|||+++.+|++ ..+ .+ ..+-|++|+..||.|.++.+..+...+++++.
T Consensus 81 ~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL-~G---~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~ 154 (830)
T PRK12904 81 RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNAL-TG---KGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVG 154 (830)
T ss_pred CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHH-cC---CCEEEEecCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 79999998887776665 9999999999999999986 444 32 25779999999999999999999999999999
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcCC------CCCCCccEEEEccchhhh-ccC--------------
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRV-FDMLRRQS------LRPDYIRMFVLDEADEML-SRG-------------- 198 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~~------~~~~~~~~iIiDE~h~~~-~~~-------------- 198 (413)
++.++.+........ .++|+++|+..| +++++... .....+.++|+||+|.++ +..
T Consensus 155 ~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~ 232 (830)
T PRK12904 155 VILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSS 232 (830)
T ss_pred EEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCCccc
Confidence 999988766655443 489999999999 77776543 235568899999999754 211
Q ss_pred -cHHHHHHHHhhCCCC----------------------------------------------------------------
Q 015093 199 -FKDQIYDIFQHLPGK---------------------------------------------------------------- 213 (413)
Q Consensus 199 -~~~~~~~~~~~~~~~---------------------------------------------------------------- 213 (413)
....+..+...+...
T Consensus 233 ~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg 312 (830)
T PRK12904 233 ELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDG 312 (830)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECC
Confidence 011111111111000
Q ss_pred -----------------------------------------------------ceEEEEeeeCChhHHHHHHHhcCCCEE
Q 015093 214 -----------------------------------------------------IQVGVFSATMPPEALEITRKFMNKPVR 240 (413)
Q Consensus 214 -----------------------------------------------------~~~i~lSAT~~~~~~~~~~~~~~~~~~ 240 (413)
.++.+||+|......++...|....+.
T Consensus 313 ~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~ 392 (830)
T PRK12904 313 EVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVV 392 (830)
T ss_pred EEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEE
Confidence 367788888876555444444333333
Q ss_pred EEecCCccccCCceEEEEEeCccccHHHHHHHHHHh--cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHH
Q 015093 241 ILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET--LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSR 318 (413)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r 318 (413)
++. ..+......... .......+...+...+.. ..+.|+||||+|++.++.+++.|.+.++++..+|+. +.+|
T Consensus 393 IPt-nkp~~r~d~~d~--i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eR 467 (830)
T PRK12904 393 IPT-NRPMIRIDHPDL--IYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHER 467 (830)
T ss_pred cCC-CCCeeeeeCCCe--EEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHH
Confidence 322 222211111111 123345677788877755 466799999999999999999999999999999996 6789
Q ss_pred HHHHHHHhcCCCeEEEEeCccccCCCCCC--------------------------------------CCEEEEcCCCCCh
Q 015093 319 DIIMREFRSGSSRVLITTDLLARGIDVQQ--------------------------------------VSLVINYDLPTQP 360 (413)
Q Consensus 319 ~~~~~~f~~~~~~vli~t~~~~~G~d~~~--------------------------------------~~~vi~~~~~~s~ 360 (413)
+..+..|..+...|+|||+++++|+|++- =-+||....+.|.
T Consensus 468 Ea~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesr 547 (830)
T PRK12904 468 EAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESR 547 (830)
T ss_pred HHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchH
Confidence 99999999999999999999999999863 2357777788999
Q ss_pred hHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 361 ~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
.--.|..||+||.|.+|.+.+|++-.|.-+
T Consensus 548 Rid~QlrGRagRQGdpGss~f~lSleD~l~ 577 (830)
T PRK12904 548 RIDNQLRGRSGRQGDPGSSRFYLSLEDDLM 577 (830)
T ss_pred HHHHHhhcccccCCCCCceeEEEEcCcHHH
Confidence 999999999999999999999999877544
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=5.3e-29 Score=239.01 Aligned_cols=317 Identities=18% Similarity=0.203 Sum_probs=229.9
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.|++.|.-+.-.+..|+ +..+.||+|||+++.++++.....+ ..+-+++|+.-||.|-++.+..+...+|+++++
T Consensus 80 ~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G---~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~ 154 (796)
T PRK12906 80 RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTG---KGVHVVTVNEYLSSRDATEMGELYRWLGLTVGL 154 (796)
T ss_pred CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcC---CCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEE
Confidence 79999998887776666 9999999999999988877665544 489999999999999999999999999999999
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHH-HHHHcC------CCCCCCccEEEEccchhhh-ccC---------------
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVF-DMLRRQ------SLRPDYIRMFVLDEADEML-SRG--------------- 198 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~-~~~~~~------~~~~~~~~~iIiDE~h~~~-~~~--------------- 198 (413)
+.++......... -.++|+++|...|. +.++.. ......+.+.|+||+|.++ +..
T Consensus 155 i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~~~ 232 (796)
T PRK12906 155 NLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATD 232 (796)
T ss_pred eCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcchH
Confidence 9987765544433 35799999998874 233321 1123457889999999643 110
Q ss_pred cHHHHHHHHhhCCC------------------------------------------------------------------
Q 015093 199 FKDQIYDIFQHLPG------------------------------------------------------------------ 212 (413)
Q Consensus 199 ~~~~~~~~~~~~~~------------------------------------------------------------------ 212 (413)
....+..+...+..
T Consensus 233 ~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~ 312 (796)
T PRK12906 233 LYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIML 312 (796)
T ss_pred HHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHHHh
Confidence 00001111000000
Q ss_pred -C-------------------------------------------------------------ceEEEEeeeCChhHHHH
Q 015093 213 -K-------------------------------------------------------------IQVGVFSATMPPEALEI 230 (413)
Q Consensus 213 -~-------------------------------------------------------------~~~i~lSAT~~~~~~~~ 230 (413)
+ .++.|||+|......++
T Consensus 313 ~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef 392 (796)
T PRK12906 313 KDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEF 392 (796)
T ss_pred cCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHH
Confidence 0 36677888876554444
Q ss_pred HHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEe
Q 015093 231 TRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSA 308 (413)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~ 308 (413)
...| +-++...+...+........ ..+.....+...+...+... .+.|+||||++++.++.+++.|.+.++++..
T Consensus 393 ~~iY-~l~vv~IPtnkp~~r~d~~d--~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~ 469 (796)
T PRK12906 393 REIY-NMEVITIPTNRPVIRKDSPD--LLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAV 469 (796)
T ss_pred HHHh-CCCEEEcCCCCCeeeeeCCC--eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeE
Confidence 4433 33332222221111111111 11223345777777777543 6689999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCC---CCC-----EEEEcCCCCChhHHHhhhcccCCCCCcceEE
Q 015093 309 THGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQ---QVS-----LVINYDLPTQPENYLHRIGRSGRFGRKGVAI 380 (413)
Q Consensus 309 ~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~---~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~ 380 (413)
+|+++...++..+.+.++.|. |+|||+++++|.|++ .+. +||.+..|.|...+.|+.||+||.|.+|.+.
T Consensus 470 Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 470 LNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred ecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 999998777777777776666 999999999999995 788 9999999999999999999999999999999
Q ss_pred EEeccccHHH
Q 015093 381 NFVTRDDDRM 390 (413)
Q Consensus 381 ~~~~~~~~~~ 390 (413)
++++..|.-+
T Consensus 548 ~~~sleD~l~ 557 (796)
T PRK12906 548 FYLSLEDDLM 557 (796)
T ss_pred EEEeccchHH
Confidence 9999886543
No 98
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.97 E-value=1.8e-28 Score=243.59 Aligned_cols=319 Identities=20% Similarity=0.221 Sum_probs=216.8
Q ss_pred CCcHHHHhhhhhhh----CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 62 KPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~----~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|++||..++..+. .|.++|+...+|.|||+.++..+...........++|||||. ++..+|.+++.+++. ..
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p--~l 245 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCP--VL 245 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCC--CC
Confidence 79999999998775 467799999999999998765554332223334479999996 667889999999986 45
Q ss_pred eEEEEECCcchHHHHH---HHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCc
Q 015093 138 KVHACVGGTSVREDQR---ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKI 214 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~---~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~ 214 (413)
.+..++|......... ......+|+|+|++++...... +....+++||+||||++.+. .....+.+..+.. .
T Consensus 246 ~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L~a-~ 320 (1033)
T PLN03142 246 RAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLFST-N 320 (1033)
T ss_pred ceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCH--HHHHHHHHHHhhc-C
Confidence 6666676544322211 1234678999999998754322 22234789999999998543 3445566666654 3
Q ss_pred eEEEEeeeCChh-HHHHH-----------------HHhcCCCEEE----------------EecC------CccccCCce
Q 015093 215 QVGVFSATMPPE-ALEIT-----------------RKFMNKPVRI----------------LVKR------DELTLEGIK 254 (413)
Q Consensus 215 ~~i~lSAT~~~~-~~~~~-----------------~~~~~~~~~~----------------~~~~------~~~~~~~~~ 254 (413)
..+++||||-.+ ..++. ..++...... .... ...++....
T Consensus 321 ~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~ 400 (1033)
T PLN03142 321 YRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKET 400 (1033)
T ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeE
Confidence 467899999521 11110 0000000000 0000 000000000
Q ss_pred EEEEE------------------------------------------------------------eCccccHHHHHHHHH
Q 015093 255 QFHVN------------------------------------------------------------VDKEEWKLDTLCDLY 274 (413)
Q Consensus 255 ~~~~~------------------------------------------------------------~~~~~~~~~~l~~~~ 274 (413)
.+... .-....+...+..++
T Consensus 401 iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL 480 (1033)
T PLN03142 401 ILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLL 480 (1033)
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHH
Confidence 00000 000123455556666
Q ss_pred Hhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCC---CeEEEEeCccccCCCCCCCC
Q 015093 275 ETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGS---SRVLITTDLLARGIDVQQVS 349 (413)
Q Consensus 275 ~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vli~t~~~~~G~d~~~~~ 349 (413)
... .+.++|||+........+.++|...++....++|+++..+|..+++.|++.. .-+|++|.+.+.|+|+..++
T Consensus 481 ~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad 560 (1033)
T PLN03142 481 PKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATAD 560 (1033)
T ss_pred HHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCC
Confidence 544 4569999999999999999999999999999999999999999999997632 35789999999999999999
Q ss_pred EEEEcCCCCChhHHHhhhcccCCCCCcce--EEEEeccccH
Q 015093 350 LVINYDLPTQPENYLHRIGRSGRFGRKGV--AINFVTRDDD 388 (413)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~--~~~~~~~~~~ 388 (413)
+||+++++|++....|++||+.|.|+... ++.+++....
T Consensus 561 ~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 561 IVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred EEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcH
Confidence 99999999999999999999999998654 4455555543
No 99
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=4.5e-28 Score=234.94 Aligned_cols=311 Identities=17% Similarity=0.271 Sum_probs=222.9
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH-hhcccCceEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA-LGDYMGVKVH 140 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~-~~~~~~~~~~ 140 (413)
.-+....+.+.++..+..++|.+|||||||......+++... ..+..+.+.=|.+--+...++.+.+ +....|..|+
T Consensus 50 Pv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VG 127 (845)
T COG1643 50 PVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVG 127 (845)
T ss_pred CcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceee
Confidence 445556667777778888999999999999887776766654 2344888999998666666555533 3333454555
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchh-hhccCcH-HHHHHHHhhCCCCceEEE
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE-MLSRGFK-DQIYDIFQHLPGKIQVGV 218 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~-~~~~~~~-~~~~~~~~~~~~~~~~i~ 218 (413)
+.....+ .......|-++|.+.|++.+..... ++.+++||+||+|+ ..+.++. ..+..++...+.+.++|.
T Consensus 128 Y~iRfe~------~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIi 200 (845)
T COG1643 128 YSIRFES------KVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLII 200 (845)
T ss_pred EEEEeec------cCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 5443222 1234578999999999999987765 66789999999998 3343333 445566777777899999
Q ss_pred EeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCcccc-HHHHHHHH---HHhcCCCcEEEEEcCcccHHH
Q 015093 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEW-KLDTLCDL---YETLAITQSVIFVNTRRKVDW 294 (413)
Q Consensus 219 lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~---~~~~~~~~~lIf~~~~~~a~~ 294 (413)
||||+... . +..++++...+.+....++ +...+........ ....+... ......|.+|||.+...+.+.
T Consensus 201 mSATld~~--r-fs~~f~~apvi~i~GR~fP---Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~ 274 (845)
T COG1643 201 MSATLDAE--R-FSAYFGNAPVIEIEGRTYP---VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIER 274 (845)
T ss_pred EecccCHH--H-HHHHcCCCCEEEecCCccc---eEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHH
Confidence 99999643 3 3445554333333322221 2222212221122 22333333 333456899999999999999
Q ss_pred HHHHHhh----CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC--------------
Q 015093 295 LTDQMRS----RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL-------------- 356 (413)
Q Consensus 295 l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~-------------- 356 (413)
+++.|.+ ....+..+||.++..++.++++.-..|+.+|+++|+++++++.+|+++.||+.+.
T Consensus 275 ~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~ 354 (845)
T COG1643 275 TAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTR 354 (845)
T ss_pred HHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCcee
Confidence 9999998 3578999999999999999888877887889999999999999999999998664
Q ss_pred ----CCChhHHHhhhcccCCCCCcceEEEEeccccH
Q 015093 357 ----PTQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388 (413)
Q Consensus 357 ----~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 388 (413)
+.|..+..||.||+||.+ +|.|+-+|++.+.
T Consensus 355 L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~ 389 (845)
T COG1643 355 LETEPISKASADQRAGRAGRTG-PGICYRLYSEEDF 389 (845)
T ss_pred eeEEEechhhhhhhccccccCC-CceEEEecCHHHH
Confidence 458889999999999984 8999999998543
No 100
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.96 E-value=7.3e-28 Score=220.76 Aligned_cols=309 Identities=16% Similarity=0.243 Sum_probs=217.7
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHH-HHhhcccCceEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVM-RALGDYMGVKVH 140 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~-~~~~~~~~~~~~ 140 (413)
..+.+-.+.+..+.+++-++|.|+||||||......+.+.-.... + ++.+.-|++--+...+.+. .+.....|..|+
T Consensus 51 PI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~-g-~I~~TQPRRVAavslA~RVAeE~~~~lG~~VG 128 (674)
T KOG0922|consen 51 PIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASS-G-KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVG 128 (674)
T ss_pred CHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccC-C-cEEeecCchHHHHHHHHHHHHHhCCCcCceee
Confidence 445556677888888888999999999999887655555433333 2 5888889887666655544 333333444454
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhh-hccC-cHHHHHHHHhhCCCCceEEE
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEM-LSRG-FKDQIYDIFQHLPGKIQVGV 218 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~-~~~~-~~~~~~~~~~~~~~~~~~i~ 218 (413)
+...=.+ .......|.++|.+.|++.+...+. ++.+++||+||||+= ...+ ....+.++++.. ++.++|.
T Consensus 129 Y~IRFed------~ts~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R-~~LklIi 200 (674)
T KOG0922|consen 129 YTIRFED------STSKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLHTDILLGLLKKILKKR-PDLKLII 200 (674)
T ss_pred eEEEecc------cCCCceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhhHHHHHHHHHHHHHhcC-CCceEEE
Confidence 4432111 1123568999999999998887665 556899999999972 1111 223333444333 4689999
Q ss_pred EeeeCChhHHHHHHHhcCC-CEEEEecCCccccCCceEEEEEeCcc---ccHHHHHHHHHHhcCCCcEEEEEcCcccHHH
Q 015093 219 FSATMPPEALEITRKFMNK-PVRILVKRDELTLEGIKQFHVNVDKE---EWKLDTLCDLYETLAITQSVIFVNTRRKVDW 294 (413)
Q Consensus 219 lSAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~ 294 (413)
+|||+. . +.+..|+.. ++. .+....+ .+..++...+.. ...+..+.++....+.+.+|||..+.++.+.
T Consensus 201 mSATld--a-~kfS~yF~~a~i~-~i~GR~f---PVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~ 273 (674)
T KOG0922|consen 201 MSATLD--A-EKFSEYFNNAPIL-TIPGRTF---PVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEA 273 (674)
T ss_pred Eeeeec--H-HHHHHHhcCCceE-eecCCCC---ceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHH
Confidence 999995 3 334455555 443 3322222 233334333332 2334445555556677899999999999999
Q ss_pred HHHHHhhC----C----CeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC----------
Q 015093 295 LTDQMRSR----D----HTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL---------- 356 (413)
Q Consensus 295 l~~~l~~~----~----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~---------- 356 (413)
+++.|.+. . .-+..+||.++.+++.++.+.-..|..+|+++|+++++.+.++++..||+.+.
T Consensus 274 ~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~ 353 (674)
T KOG0922|consen 274 ACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRT 353 (674)
T ss_pred HHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeecccc
Confidence 99999874 1 12467999999999999999888899999999999999999999999997653
Q ss_pred --------CCChhHHHhhhcccCCCCCcceEEEEeccccH
Q 015093 357 --------PTQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388 (413)
Q Consensus 357 --------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 388 (413)
|.|..+-.||.||+||.| +|+|+.+|++.+.
T Consensus 354 g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 354 GLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred CccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 568899999999999985 8999999998764
No 101
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.4e-27 Score=228.41 Aligned_cols=148 Identities=21% Similarity=0.305 Sum_probs=126.5
Q ss_pred cCCCCCHHHHHHHH-----hCCCCCC---cHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEE
Q 015093 43 DSMGLKENLLRGIY-----AYGFEKP---SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVL 114 (413)
Q Consensus 43 ~~~~l~~~~~~~l~-----~~~~~~~---~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl 114 (413)
+.+.+..+..+.+. ..|+..| +|+|.++++.+..+++++..++||+|||++|++|++..+.... .++|+
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~---~v~IV 141 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK---PVHLV 141 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC---CeEEE
Confidence 45667777777776 5788888 9999999999999999999999999999999999997665432 58999
Q ss_pred cccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcCCCCCC-------CccEE
Q 015093 115 APTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRV-FDMLRRQSLRPD-------YIRMF 186 (413)
Q Consensus 115 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~~~~~~-------~~~~i 186 (413)
+|++.|+.|..+.+..+...+++++..+.||.....+.... .++|+|+||+.| +++++...+.++ .+.++
T Consensus 142 TpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~ 219 (970)
T PRK12899 142 TVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFA 219 (970)
T ss_pred eCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEE
Confidence 99999999999999999999999999999998877665443 589999999999 899888755554 35799
Q ss_pred EEccchhhh
Q 015093 187 VLDEADEML 195 (413)
Q Consensus 187 IiDE~h~~~ 195 (413)
|+||||.++
T Consensus 220 IIDEADsmL 228 (970)
T PRK12899 220 IIDEVDSIL 228 (970)
T ss_pred EEechhhhh
Confidence 999999865
No 102
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=3.6e-27 Score=226.90 Aligned_cols=317 Identities=18% Similarity=0.233 Sum_probs=229.2
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.|++.|.-.--.+..|+ +..++||+|||+++.+|++.....+. .+.|++|+..|+.+-.+.+..+...+|+++.+
T Consensus 82 ~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~g~---~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~ 156 (908)
T PRK13107 82 RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTGK---GVHVITVNDYLARRDAENNRPLFEFLGLTVGI 156 (908)
T ss_pred CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhcCC---CEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 78888887776665554 99999999999999999876655443 69999999999999999999999999999999
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcC-CCCC-----CCccEEEEccchhhhccC----------------
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRV-FDMLRRQ-SLRP-----DYIRMFVLDEADEMLSRG---------------- 198 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~-~~~~-----~~~~~iIiDE~h~~~~~~---------------- 198 (413)
+.++.+... +...-.++|+++|++.| +++++.. .... ..+.++|+||+|.++-..
T Consensus 157 i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~ 234 (908)
T PRK13107 157 NVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSE 234 (908)
T ss_pred ecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCccchH
Confidence 998877533 23333689999999999 7777665 2222 557899999999754211
Q ss_pred -cH---H---H------------------------------------HHHHH---h------hC----------------
Q 015093 199 -FK---D---Q------------------------------------IYDIF---Q------HL---------------- 210 (413)
Q Consensus 199 -~~---~---~------------------------------------~~~~~---~------~~---------------- 210 (413)
|. . . +...+ . .+
T Consensus 235 ~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL 314 (908)
T PRK13107 235 LYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAAL 314 (908)
T ss_pred HHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHHHHH
Confidence 00 0 0 00111 0 00
Q ss_pred ------CCC-------------------------------------------------------------ceEEEEeeeC
Q 015093 211 ------PGK-------------------------------------------------------------IQVGVFSATM 223 (413)
Q Consensus 211 ------~~~-------------------------------------------------------------~~~i~lSAT~ 223 (413)
..+ .++.+||+|.
T Consensus 315 ~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa 394 (908)
T PRK13107 315 RAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTA 394 (908)
T ss_pred HHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCC
Confidence 000 2566777776
Q ss_pred ChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhh
Q 015093 224 PPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRS 301 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~ 301 (413)
.....++...|....+.+..... .......... +.....+..++..-+... .+.++||||.|++.++.+++.|.+
T Consensus 395 ~te~~Ef~~iY~l~Vv~IPTnkp-~~R~d~~d~i--y~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~ 471 (908)
T PRK13107 395 DTEAFEFQHIYGLDTVVVPTNRP-MVRKDMADLV--YLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVK 471 (908)
T ss_pred hHHHHHHHHHhCCCEEECCCCCC-ccceeCCCcE--EeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHH
Confidence 65544444443333332222222 1111111111 222344555555544432 567999999999999999999999
Q ss_pred CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCC-----------------------------------
Q 015093 302 RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQ----------------------------------- 346 (413)
Q Consensus 302 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~----------------------------------- 346 (413)
.++++..+|++++..++..+.+.|+.|. |+|||+++++|.|+.
T Consensus 472 ~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 549 (908)
T PRK13107 472 EKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVV 549 (908)
T ss_pred CCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999988 999999999999986
Q ss_pred --CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 347 --QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 347 --~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
+=-+||-...+.|..-=.|..||+||.|.||.+.+|++-.|.-+
T Consensus 550 ~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~ 595 (908)
T PRK13107 550 AAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLM 595 (908)
T ss_pred HcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHH
Confidence 22357777888888889999999999999999999999877643
No 103
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.95 E-value=1.2e-26 Score=217.73 Aligned_cols=295 Identities=18% Similarity=0.243 Sum_probs=198.0
Q ss_pred CCCcHHHHhhhhhhh----CCCc-EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhccc
Q 015093 61 EKPSAIQQRGIVPFC----KGLD-VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM 135 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~----~~~~-~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~ 135 (413)
..||.||..|+..+. +|++ +|++|+||+|||.+++..+ ..|.+.+..+++|+++.+++|+.|.+..+..+.+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii-~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~ 242 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAII-DRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG 242 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHH-HHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCc
Confidence 379999999987654 4543 9999999999999986544 445444555699999999999999999988886542
Q ss_pred CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC-----CCCCCCccEEEEccchhhhccCcHHHHHHHHhhC
Q 015093 136 GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ-----SLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHL 210 (413)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~-----~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 210 (413)
-.+..+.+... ..++.|.++|++++....... .+....+++||+||||+-.... +..++..+
T Consensus 243 -~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~----~~~I~dYF 309 (875)
T COG4096 243 -TKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSE----WSSILDYF 309 (875)
T ss_pred -cceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhh----hHHHHHHH
Confidence 22333332221 125799999999999887654 3445668999999999864333 33666666
Q ss_pred CCCceEEEEeeeCChhHHHHHHHhc-CCCEEEEecC-----CccccCCceEEEEEeC-----------------------
Q 015093 211 PGKIQVGVFSATMPPEALEITRKFM-NKPVRILVKR-----DELTLEGIKQFHVNVD----------------------- 261 (413)
Q Consensus 211 ~~~~~~i~lSAT~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~----------------------- 261 (413)
.. ..+++||||.......--.++ +.|...+.-. ....++.........+
T Consensus 310 dA--~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~d 387 (875)
T COG4096 310 DA--ATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDED 387 (875)
T ss_pred HH--HHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcc
Confidence 32 245569999765444444444 4443322211 0111111111111000
Q ss_pred -----------------ccccHHHHHHHHHHhc--C--CCcEEEEEcCcccHHHHHHHHhhC-----CCeeEeecCCCCH
Q 015093 262 -----------------KEEWKLDTLCDLYETL--A--ITQSVIFVNTRRKVDWLTDQMRSR-----DHTVSATHGDMDQ 315 (413)
Q Consensus 262 -----------------~~~~~~~~l~~~~~~~--~--~~~~lIf~~~~~~a~~l~~~l~~~-----~~~~~~~~~~~~~ 315 (413)
..+.....+.+.++.. . .+|+||||.+..+|+.+.+.|.+. +--+..+.++...
T Consensus 388 d~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~ 467 (875)
T COG4096 388 DQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQ 467 (875)
T ss_pred cccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchh
Confidence 0111233444444442 1 469999999999999999999764 3346666666443
Q ss_pred HHHHHHHHHHhc-C-CCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCC
Q 015093 316 NSRDIIMREFRS-G-SSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 373 (413)
Q Consensus 316 ~~r~~~~~~f~~-~-~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 373 (413)
-+..++.|.. . -.+|.|+++++.+|+|+|.+..+|++....|...|+||+||+-|.
T Consensus 468 --~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 468 --AQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred --hHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 3444566654 2 346888889999999999999999999999999999999999995
No 104
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=2.1e-26 Score=218.34 Aligned_cols=336 Identities=17% Similarity=0.236 Sum_probs=236.1
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhhh--hhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHH
Q 015093 47 LKENLLRGIYAYGFEKPSAIQQRGI--VPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQI 124 (413)
Q Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~~--~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~ 124 (413)
.+....-.....|+..++.||.+.+ +.++.+++.+...||+.|||+++-+.++......+ ..++.+.|..+.+..-
T Consensus 208 ~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~r--r~~llilp~vsiv~Ek 285 (1008)
T KOG0950|consen 208 PTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRR--RNVLLILPYVSIVQEK 285 (1008)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHh--hceeEecceeehhHHH
Confidence 3344444455678889999999887 55778899999999999999999887776554432 3789999999999999
Q ss_pred HHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc--CCCCCCCccEEEEccchhhhccCcHHH
Q 015093 125 EKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR--QSLRPDYIRMFVLDEADEMLSRGFKDQ 202 (413)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~--~~~~~~~~~~iIiDE~h~~~~~~~~~~ 202 (413)
...+..+....|+.+....|........ ....+.|+|.++-...+.. ....+..+++||+||.|.+.+.+.+..
T Consensus 286 ~~~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~ 361 (1008)
T KOG0950|consen 286 ISALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAI 361 (1008)
T ss_pred HhhhhhhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchH
Confidence 9999999999999988887665533322 2357999999877654432 223456689999999999988887766
Q ss_pred HHHHHhhC-----CCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeC----c-cccHH-----
Q 015093 203 IYDIFQHL-----PGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVD----K-EEWKL----- 267 (413)
Q Consensus 203 ~~~~~~~~-----~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~----- 267 (413)
+..++..+ ....++|+||||+++. . .+..++...+... .++|..+........ . ....+
T Consensus 362 lE~~l~k~~y~~~~~~~~iIGMSATi~N~-~-lL~~~L~A~~y~t----~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~ 435 (1008)
T KOG0950|consen 362 LELLLAKILYENLETSVQIIGMSATIPNN-S-LLQDWLDAFVYTT----RFRPVPLKEYIKPGSLIYESSRNKVLREIAN 435 (1008)
T ss_pred HHHHHHHHHHhccccceeEeeeecccCCh-H-HHHHHhhhhheec----ccCcccchhccCCCcccccchhhHHHHHhhh
Confidence 65554433 2346799999999753 2 2222322111111 011111111111000 0 00001
Q ss_pred -----------HHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhC--------------------------------
Q 015093 268 -----------DTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSR-------------------------------- 302 (413)
Q Consensus 268 -----------~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~-------------------------------- 302 (413)
+.+..+..+. .+..+||||++++.|+.++..+...
T Consensus 436 l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~ 515 (1008)
T KOG0950|consen 436 LYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDP 515 (1008)
T ss_pred hhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccch
Confidence 1222222221 2235999999999999888666421
Q ss_pred ------CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcC----CCCChhHHHhhhcccCC
Q 015093 303 ------DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD----LPTQPENYLHRIGRSGR 372 (413)
Q Consensus 303 ------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~----~~~s~~~~~Q~~GR~~R 372 (413)
...+.++|++++..+|+.+...|++|...|+.||+++..|+|+|..++++-+. ...+..+|.||+||+||
T Consensus 516 Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR 595 (1008)
T KOG0950|consen 516 VLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGR 595 (1008)
T ss_pred HHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhh
Confidence 24588999999999999999999999999999999999999999988887432 34577899999999999
Q ss_pred CCC--cceEEEEeccccHHHHHHH
Q 015093 373 FGR--KGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 373 ~g~--~g~~~~~~~~~~~~~~~~~ 394 (413)
+|. .|.+++++...+......+
T Consensus 596 ~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 596 TGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred cccccCcceEEEeeccchhHHHHH
Confidence 986 4899999999988766543
No 105
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=2.1e-26 Score=189.38 Aligned_cols=164 Identities=27% Similarity=0.456 Sum_probs=139.4
Q ss_pred cHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEE
Q 015093 64 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACV 143 (413)
Q Consensus 64 ~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 143 (413)
+|+|.++++.+.+++++++.+|||+|||++++.+++..+.+. ...++++++|+++|++|..+.+..+....+.++..++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccccccccccc
Confidence 589999999999999999999999999999999999888766 4459999999999999999999999887778899999
Q ss_pred CCcchH-HHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCC--CceEEEEe
Q 015093 144 GGTSVR-EDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPG--KIQVGVFS 220 (413)
Q Consensus 144 ~~~~~~-~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~--~~~~i~lS 220 (413)
++.... .........++|+|+||+.|...+........++++||+||+|.+....+...+..+.+.+.. +.+++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~S 159 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLS 159 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 888755 333444567899999999999999886556666999999999999887777788888777733 58999999
Q ss_pred eeCChhHH
Q 015093 221 ATMPPEAL 228 (413)
Q Consensus 221 AT~~~~~~ 228 (413)
||++.+.+
T Consensus 160 AT~~~~~~ 167 (169)
T PF00270_consen 160 ATLPSNVE 167 (169)
T ss_dssp SSSTHHHH
T ss_pred eCCChhHh
Confidence 99985443
No 106
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.95 E-value=1.5e-25 Score=219.07 Aligned_cols=298 Identities=16% Similarity=0.162 Sum_probs=182.3
Q ss_pred CCcHHHHhhhhhhhC----------CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 62 KPSAIQQRGIVPFCK----------GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~----------~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
-++++|..++..+.. .+..+++++||||||++++..+...+ .....+++||++|+.+|..|+.+.+..+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-ELLKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hhcCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 489999999977632 24699999999999999876665544 3334569999999999999999999987
Q ss_pred hcccCceEEEEECCcchHHHHHHH-hcCCcEEEeChHHHHHHHHcC--CCCCCC-ccEEEEccchhhhccCcHHHHHHHH
Q 015093 132 GDYMGVKVHACVGGTSVREDQRIL-SAGVHVVVGTPGRVFDMLRRQ--SLRPDY-IRMFVLDEADEMLSRGFKDQIYDIF 207 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~T~~~l~~~~~~~--~~~~~~-~~~iIiDE~h~~~~~~~~~~~~~~~ 207 (413)
.... + .+..+.......+ .....|+|+|.++|...+... .+.... -.+||+||||+.....+. +.+
T Consensus 317 ~~~~---~---~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~----~~l 386 (667)
T TIGR00348 317 QKDC---A---ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELA----KNL 386 (667)
T ss_pred CCCC---C---cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHH----HHH
Confidence 5321 0 0111111222222 234689999999998644321 111111 138999999987544333 333
Q ss_pred -hhCCCCceEEEEeeeCChhHHHHHHHh----cCCCEEEEecCCccccCCc-eEEEEE-------eCc------------
Q 015093 208 -QHLPGKIQVGVFSATMPPEALEITRKF----MNKPVRILVKRDELTLEGI-KQFHVN-------VDK------------ 262 (413)
Q Consensus 208 -~~~~~~~~~i~lSAT~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~------------ 262 (413)
..++ +...+++||||........... ++..+....... +...+. ..+.+. .+.
T Consensus 387 ~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~-AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~ 464 (667)
T TIGR00348 387 KKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITD-AIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFE 464 (667)
T ss_pred HhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHH-HhhcCCeeeEEEEecchhhccChHHHHHHHHHHHH
Confidence 3444 5679999999963211111111 122222221111 111110 000000 000
Q ss_pred ------cc--------------------cHHHHHHH-HH----Hh--cCCCcEEEEEcCcccHHHHHHHHhhC-----CC
Q 015093 263 ------EE--------------------WKLDTLCD-LY----ET--LAITQSVIFVNTRRKVDWLTDQMRSR-----DH 304 (413)
Q Consensus 263 ------~~--------------------~~~~~l~~-~~----~~--~~~~~~lIf~~~~~~a~~l~~~l~~~-----~~ 304 (413)
.+ .....+.. ++ +. ...++.+|||.++.+|..+++.|.+. +.
T Consensus 465 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~ 544 (667)
T TIGR00348 465 LLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEA 544 (667)
T ss_pred hhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCC
Confidence 00 00011111 11 11 12479999999999999999888654 23
Q ss_pred eeEeecCCCCHH---------------------HHHHHHHHHhc-CCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhH
Q 015093 305 TVSATHGDMDQN---------------------SRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPEN 362 (413)
Q Consensus 305 ~~~~~~~~~~~~---------------------~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~ 362 (413)
....+++..+.. ....+++.|++ +..+|||+++++.+|+|.|.++++++..+..+. .
T Consensus 545 ~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~h-~ 623 (667)
T TIGR00348 545 SAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKYH-G 623 (667)
T ss_pred eeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccccc-H
Confidence 445555543322 22467888876 678999999999999999999999988876654 5
Q ss_pred HHhhhcccCCC
Q 015093 363 YLHRIGRSGRF 373 (413)
Q Consensus 363 ~~Q~~GR~~R~ 373 (413)
++|++||+.|.
T Consensus 624 LlQai~R~nR~ 634 (667)
T TIGR00348 624 LLQAIARTNRI 634 (667)
T ss_pred HHHHHHHhccc
Confidence 89999999994
No 107
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.94 E-value=5.4e-26 Score=224.41 Aligned_cols=324 Identities=16% Similarity=0.192 Sum_probs=212.2
Q ss_pred CCcHHHHhhhhhhhCC---C-cEEEeCCCCCchhHHHHHHHHHhccc-ccCceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 62 KPSAIQQRGIVPFCKG---L-DVIQQAQSGTGKTATFCSGILQQLDY-ESLQCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~---~-~~lv~~~tGsGKT~~~~~~i~~~l~~-~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
.+++.|..+++.+.+. . .+++.+|||+|||.+.+.++...+.. .....+++++.|++++.+++++.++.+....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 5689999999887764 4 68899999999999999888877766 34566999999999999999999998765443
Q ss_pred ceEEEEECCcchHHHHHH--------------HhcCCcEEEeChHHHHHHH-HcCCCC-C--CCccEEEEccchhhhccC
Q 015093 137 VKVHACVGGTSVREDQRI--------------LSAGVHVVVGTPGRVFDML-RRQSLR-P--DYIRMFVLDEADEMLSRG 198 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~--------------~~~~~~Iii~T~~~l~~~~-~~~~~~-~--~~~~~iIiDE~h~~~~~~ 198 (413)
......++.......... ...-..++++|+....... ....+. + -..+++|+||+|.+....
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 333212332221111000 0001223344444333311 111111 0 114789999999876552
Q ss_pred cHHHHHHHHhhC-CCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEe-CccccH--HHHHHHHH
Q 015093 199 FKDQIYDIFQHL-PGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNV-DKEEWK--LDTLCDLY 274 (413)
Q Consensus 199 ~~~~~~~~~~~~-~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~l~~~~ 274 (413)
....+..++... ..+.+++++|||+++.....+...+.....+..........+-....... ...... ........
T Consensus 355 ~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 434 (733)
T COG1203 355 MLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELIS 434 (733)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcch
Confidence 333444443333 23678999999999998888888877766555432211100000000000 000001 01111112
Q ss_pred -HhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHh----cCCCeEEEEeCccccCCCCCCCC
Q 015093 275 -ETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFR----SGSSRVLITTDLLARGIDVQQVS 349 (413)
Q Consensus 275 -~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~----~~~~~vli~t~~~~~G~d~~~~~ 349 (413)
....+++++|.|||+..|..+++.|++.+.++..+||.+...+|.++++.+. .+...|+|+||+++.|+|+. .+
T Consensus 435 ~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd 513 (733)
T COG1203 435 EEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FD 513 (733)
T ss_pred hhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cC
Confidence 2235579999999999999999999998878999999999999998887654 46788999999999999994 66
Q ss_pred EEEEcCCCCChhHHHhhhcccCCCC--CcceEEEEeccccH
Q 015093 350 LVINYDLPTQPENYLHRIGRSGRFG--RKGVAINFVTRDDD 388 (413)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~ 388 (413)
.+| .-+....+++||+||++|.| ..|..+++......
T Consensus 514 ~mI--Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~ 552 (733)
T COG1203 514 VLI--TELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERG 552 (733)
T ss_pred eee--ecCCCHHHHHHHHHHHhhcccccCCceeEeecccCC
Confidence 655 33455899999999999999 56777777665533
No 108
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.6e-26 Score=210.45 Aligned_cols=312 Identities=15% Similarity=0.205 Sum_probs=214.6
Q ss_pred CCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHH-HHhhcccCc
Q 015093 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVM-RALGDYMGV 137 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~-~~~~~~~~~ 137 (413)
+....+++-.+.+.++..++-++|.|.||||||......+.+.=..++ +.++-+.-|.+.-+...+.+. +.++..+|-
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~-gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~ 340 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKG-GKKIGCTQPRRVAAMSVAARVAEEMGVKLGH 340 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccC-CceEeecCcchHHHHHHHHHHHHHhCccccc
Confidence 334678888899999999999999999999999886555554433333 335778888887766654443 333222222
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhh-hccCcHHHHHHHHhhCCCCceE
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEM-LSRGFKDQIYDIFQHLPGKIQV 216 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~-~~~~~~~~~~~~~~~~~~~~~~ 216 (413)
.+++...- ..+.....-+-++|.++|++.+.... ++..+++||+||||+= +..+..-.+-+-+.+++++.++
T Consensus 341 eVGYsIRF------EdcTSekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKl 413 (902)
T KOG0923|consen 341 EVGYSIRF------EDCTSEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKL 413 (902)
T ss_pred ccceEEEe------ccccCcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceE
Confidence 22222211 11122345678999999998776654 4667899999999972 2222222333334556678999
Q ss_pred EEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHH---HhcCCCcEEEEEcCcccHH
Q 015093 217 GVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLY---ETLAITQSVIFVNTRRKVD 293 (413)
Q Consensus 217 i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~lIf~~~~~~a~ 293 (413)
+..|||+. ...+...+-.-|++...... ..+..++...+.....-..+..++ ...+.+.+|||....++.+
T Consensus 414 lIsSAT~D--AekFS~fFDdapIF~iPGRR----yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIE 487 (902)
T KOG0923|consen 414 LISSATMD--AEKFSAFFDDAPIFRIPGRR----YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIE 487 (902)
T ss_pred EeeccccC--HHHHHHhccCCcEEeccCcc----cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHH
Confidence 99999995 33333333334444333222 123334443443332223333333 3346689999999999988
Q ss_pred HHHHHHhhC---------CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC--------
Q 015093 294 WLTDQMRSR---------DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL-------- 356 (413)
Q Consensus 294 ~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~-------- 356 (413)
.+.+.|++. .+-+..+|+.++...+.++++.-..|-.+|++||+++++.+.++++..||.-+.
T Consensus 488 t~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynp 567 (902)
T KOG0923|consen 488 TVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNP 567 (902)
T ss_pred HHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCC
Confidence 888777653 345778999999999999999888999999999999999999999999997553
Q ss_pred ----------CCChhHHHhhhcccCCCCCcceEEEEecc
Q 015093 357 ----------PTQPENYLHRIGRSGRFGRKGVAINFVTR 385 (413)
Q Consensus 357 ----------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 385 (413)
|.|..+..||.||+||.| +|+|+.+|+.
T Consensus 568 rtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 568 RTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred CcCceeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 457888999999999986 8999999984
No 109
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.94 E-value=3.1e-25 Score=205.24 Aligned_cols=316 Identities=20% Similarity=0.205 Sum_probs=225.7
Q ss_pred CCcHHHHhhhhhhhC----CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 62 KPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~----~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.+++||.+.++.+.+ |-++|+...+|-|||+..+..+..........+..||+||...|.+ |.+++++|++ ++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~N-W~~Ef~rf~P--~l 243 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDN-WMNEFKRFTP--SL 243 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHH-HHHHHHHhCC--Cc
Confidence 799999999988765 5679999999999998875444333222333458999999877655 8999999988 67
Q ss_pred eEEEEECCcchHHHH--HH-HhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCc
Q 015093 138 KVHACVGGTSVREDQ--RI-LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKI 214 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~--~~-~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~ 214 (413)
++..++|+....... .. .....+|+|+|+++....- ..+..-+++++||||||++-+ ....+.++++.+....
T Consensus 244 ~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaHRiKN--~~s~L~~~lr~f~~~n 319 (971)
T KOG0385|consen 244 NVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAHRIKN--EKSKLSKILREFKTDN 319 (971)
T ss_pred ceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhhhhcc--hhhHHHHHHHHhcccc
Confidence 888888887543322 11 2347899999999987542 122233479999999999955 4566668888887554
Q ss_pred eEEEEeeeCC-hhHHHH---------------------------------------------------------------
Q 015093 215 QVGVFSATMP-PEALEI--------------------------------------------------------------- 230 (413)
Q Consensus 215 ~~i~lSAT~~-~~~~~~--------------------------------------------------------------- 230 (413)
.+++|+||- +++-++
T Consensus 320 -rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~ 398 (971)
T KOG0385|consen 320 -RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKEL 398 (971)
T ss_pred -eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCccee
Confidence 566999984 111000
Q ss_pred ------------------------------------------HHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHH
Q 015093 231 ------------------------------------------TRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLD 268 (413)
Q Consensus 231 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (413)
++.++..|+-+...... .+.... ..+-....+..
T Consensus 399 ~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg-~pyttd---ehLv~nSGKm~ 474 (971)
T KOG0385|consen 399 IIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPG-PPYTTD---EHLVTNSGKML 474 (971)
T ss_pred eEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCC-CCCCcc---hHHHhcCccee
Confidence 11222222211110000 000000 00011234566
Q ss_pred HHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCC---CeEEEEeCccccCC
Q 015093 269 TLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGS---SRVLITTDLLARGI 343 (413)
Q Consensus 269 ~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vli~t~~~~~G~ 343 (413)
.|..++... .+.++|||.+-....+-+-+++--+++....+.|.++..+|...++.|.... .-+|++|.+.+.|+
T Consensus 475 vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGI 554 (971)
T KOG0385|consen 475 VLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGI 554 (971)
T ss_pred hHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccc
Confidence 666666554 5579999999999999999999889999999999999999999999998754 34679999999999
Q ss_pred CCCCCCEEEEcCCCCChhHHHhhhcccCCCCCc--ceEEEEeccccHH
Q 015093 344 DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GVAINFVTRDDDR 389 (413)
Q Consensus 344 d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~~~~ 389 (413)
|+..+++||+++..|++..=.|+..||+|.|+. -.++.++++...+
T Consensus 555 NL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 555 NLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred ccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 999999999999999999999999999999975 5566777776554
No 110
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=2.4e-24 Score=206.10 Aligned_cols=330 Identities=21% Similarity=0.266 Sum_probs=223.0
Q ss_pred CCCcHHHHhhhhhhhCC----CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 61 EKPSAIQQRGIVPFCKG----LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~----~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
..+.+-|..+++.+.+. ...++.+.||||||.+|+-++.+.+..++ .+|+++|-++|..|+.++++... +
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk---qvLvLVPEI~Ltpq~~~rf~~rF---g 270 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK---QVLVLVPEIALTPQLLARFKARF---G 270 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCC---EEEEEeccccchHHHHHHHHHHh---C
Confidence 46788899999998776 45999999999999999998888877654 89999999999999999998765 4
Q ss_pred ceEEEEECCcc----hHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc-----CcHHHHHHHH
Q 015093 137 VKVHACVGGTS----VREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR-----GFKDQIYDIF 207 (413)
Q Consensus 137 ~~~~~~~~~~~----~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-----~~~~~~~~~~ 207 (413)
.++..++++.+ ...|.+...+...|+|+|-..++ ..+.++++||+||=|..... .+...-..++
T Consensus 271 ~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~ 343 (730)
T COG1198 271 AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVL 343 (730)
T ss_pred CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHHHH
Confidence 56666666554 34555666678899999977765 34667899999999975422 2444444555
Q ss_pred hhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCcccc---HHHHHHHHHHhc--CCCcE
Q 015093 208 QHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEW---KLDTLCDLYETL--AITQS 282 (413)
Q Consensus 208 ~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~--~~~~~ 282 (413)
+....++++|+-||||+-+........-............+.++.+..+......... -...+.+.+++. .++++
T Consensus 344 Ra~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~ 423 (730)
T COG1198 344 RAKKENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQV 423 (730)
T ss_pred HHHHhCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeE
Confidence 5555688999999999744433332211111222222222234444433333222111 113444444332 45678
Q ss_pred EEEEcCcccHHHH-HHHH-----------------------------------------------------------hhC
Q 015093 283 VIFVNTRRKVDWL-TDQM-----------------------------------------------------------RSR 302 (413)
Q Consensus 283 lIf~~~~~~a~~l-~~~l-----------------------------------------------------------~~~ 302 (413)
|+|.|.+-.+-.+ |..+ ++.
T Consensus 424 llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~ 503 (730)
T COG1198 424 LLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRL 503 (730)
T ss_pred EEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHH
Confidence 8888877554222 2211 111
Q ss_pred --CCeeEeecCCCCH--HHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCC------------ChhHHHhh
Q 015093 303 --DHTVSATHGDMDQ--NSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------------QPENYLHR 366 (413)
Q Consensus 303 --~~~~~~~~~~~~~--~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~------------s~~~~~Q~ 366 (413)
+.++..+.+++.. ..-+..+..|.+|+.+|||.|+++..|.|+|++..|..++... ....+.|-
T Consensus 504 FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~Qv 583 (730)
T COG1198 504 FPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQV 583 (730)
T ss_pred CCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHH
Confidence 2345555555543 2356789999999999999999999999999999987654421 33457899
Q ss_pred hcccCCCCCcceEEEEeccccHHHHHHH-----HHHhccccc
Q 015093 367 IGRSGRFGRKGVAINFVTRDDDRMLADI-----QRFYNVVIE 403 (413)
Q Consensus 367 ~GR~~R~g~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 403 (413)
.||+||++++|.+++-....+...+..+ ..|++..++
T Consensus 584 aGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~dy~~F~~~El~ 625 (730)
T COG1198 584 AGRAGRAGKPGEVVIQTYNPDHPAIQALKRGDYEAFYEQELA 625 (730)
T ss_pred HhhhccCCCCCeEEEEeCCCCcHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999999886655543 455555443
No 111
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.93 E-value=7.7e-24 Score=202.24 Aligned_cols=278 Identities=21% Similarity=0.301 Sum_probs=196.2
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccC-ceE
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMG-VKV 139 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~-~~~ 139 (413)
..||..|+--...+.+|+++-+.||||.|||...++..+.. ..+ +.++++++||..|+.|..+.+++++...+ ..+
T Consensus 81 ~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~--a~k-gkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~ 157 (1187)
T COG1110 81 FRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYL--AKK-GKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDV 157 (1187)
T ss_pred CCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHH--Hhc-CCeEEEEecCHHHHHHHHHHHHHHHhhcCCcce
Confidence 39999999999999999999999999999997654433322 222 35999999999999999999999987665 333
Q ss_pred EE-EECCcchHH----HHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC-----------cH---
Q 015093 140 HA-CVGGTSVRE----DQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-----------FK--- 200 (413)
Q Consensus 140 ~~-~~~~~~~~~----~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-----------~~--- 200 (413)
.. .++...... ..+...++.+|+|+|.+-|...+..-.- -++++|++|++|.++..+ +.
T Consensus 158 ~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~--~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~ 235 (1187)
T COG1110 158 LVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK--LKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEV 235 (1187)
T ss_pred eeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc--cCCCEEEEccHHHHHhccccHHHHHHHcCCCHHH
Confidence 33 444433222 2334456899999998888766654221 347899999999765322 00
Q ss_pred --------------------HHHHHHHhh--------CCCCceEEEEeeeCChhH--HHHHHHhcCCCEEEEecCCcccc
Q 015093 201 --------------------DQIYDIFQH--------LPGKIQVGVFSATMPPEA--LEITRKFMNKPVRILVKRDELTL 250 (413)
Q Consensus 201 --------------------~~~~~~~~~--------~~~~~~~i~lSAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 250 (413)
..+.+..+. -.+.-.++..|||..+.- ..+.+.+++..+ .......
T Consensus 236 i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFev----G~~~~~L 311 (1187)
T COG1110 236 IESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEV----GSGGEGL 311 (1187)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCcc----Cccchhh
Confidence 011111111 112346888999986533 334455554332 2222233
Q ss_pred CCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcC---cccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhc
Q 015093 251 EGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNT---RRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRS 327 (413)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~---~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 327 (413)
.++...+... .....+.++++.... -+|||++. ++.+++++++|+..|+++..+|+. ..+.++.|..
T Consensus 312 RNIvD~y~~~----~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~ 381 (1187)
T COG1110 312 RNIVDIYVES----ESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEE 381 (1187)
T ss_pred hheeeeeccC----ccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhcc
Confidence 3444444433 456667777777654 58999999 899999999999999999999985 3778999999
Q ss_pred CCCeEEEEeC----ccccCCCCCC-CCEEEEcCCC
Q 015093 328 GSSRVLITTD----LLARGIDVQQ-VSLVINYDLP 357 (413)
Q Consensus 328 ~~~~vli~t~----~~~~G~d~~~-~~~vi~~~~~ 357 (413)
|+.++||++. .+-+|+|+|. ++.+|+++.|
T Consensus 382 GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 382 GEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred CceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 9999998864 7889999995 8999998876
No 112
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.7e-25 Score=204.37 Aligned_cols=308 Identities=17% Similarity=0.218 Sum_probs=204.8
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH-hhcccCceE
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA-LGDYMGVKV 139 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~-~~~~~~~~~ 139 (413)
......+.+.+..+..++-++|++.||||||......+++.=... .+-+-+.-|.+.-+...+....+ +...+|..|
T Consensus 355 LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~--~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~V 432 (1042)
T KOG0924|consen 355 LPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYAD--NGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTV 432 (1042)
T ss_pred cchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccccc--CCeeeecCchHHHHHHHHHHHHHHhCCcccccc
Confidence 355567778888888888899999999999987644443321111 22455566777766665554432 322223333
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhh-hccCcHHHHHHHHhhCCCCceEEE
Q 015093 140 HACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEM-LSRGFKDQIYDIFQHLPGKIQVGV 218 (413)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~-~~~~~~~~~~~~~~~~~~~~~~i~ 218 (413)
++...=. ........|-++|.+.|++...... .+..+++||+||||+= ++.+..-.+.+..-.-+.+.++|.
T Consensus 433 GYsIRFE------dvT~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliV 505 (1042)
T KOG0924|consen 433 GYSIRFE------DVTSEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIV 505 (1042)
T ss_pred ceEEEee------ecCCCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEE
Confidence 3322111 1112345788999999987654433 3556899999999973 233322222222223334889999
Q ss_pred EeeeCChhHHHHHHHhcC-CCEEEEecCCccccCCceEEEEEeCccccHH----HHHHHHHHhcCCCcEEEEEcCcccHH
Q 015093 219 FSATMPPEALEITRKFMN-KPVRILVKRDELTLEGIKQFHVNVDKEEWKL----DTLCDLYETLAITQSVIFVNTRRKVD 293 (413)
Q Consensus 219 lSAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~lIf~~~~~~a~ 293 (413)
+|||+. ...+. .+++ -|......+. + .+...+...+. ++.+ .....+......|.+|||....+..+
T Consensus 506 tSATm~--a~kf~-nfFgn~p~f~IpGRT-y---PV~~~~~k~p~-eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE 577 (1042)
T KOG0924|consen 506 TSATMD--AQKFS-NFFGNCPQFTIPGRT-Y---PVEIMYTKTPV-EDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIE 577 (1042)
T ss_pred eecccc--HHHHH-HHhCCCceeeecCCc-c---ceEEEeccCch-HHHHHHHHhhheEeeccCCCCCEEEecCCCcchh
Confidence 999995 33333 4444 4443333222 1 12222222222 2232 22333333446688999999999888
Q ss_pred HHHHHHhhC----------CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC-------
Q 015093 294 WLTDQMRSR----------DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL------- 356 (413)
Q Consensus 294 ~l~~~l~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~------- 356 (413)
..+..++.+ ++.+..+++.++..-+.++++....|..+++|+|+++++.+.+|++.+||..+.
T Consensus 578 ~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn 657 (1042)
T KOG0924|consen 578 CTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYN 657 (1042)
T ss_pred HHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecc
Confidence 777776542 678999999999999999999888999999999999999999999999998664
Q ss_pred -----------CCChhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 357 -----------PTQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 357 -----------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
|.|...-.||.||+||.| +|.||.+|++.
T Consensus 658 ~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 658 PRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred cccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 568888999999999986 89999999984
No 113
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.92 E-value=2.5e-22 Score=202.63 Aligned_cols=333 Identities=14% Similarity=0.155 Sum_probs=205.0
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhhhh----hhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHH
Q 015093 47 LKENLLRGIYAYGFEKPSAIQQRGIV----PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQ 122 (413)
Q Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~~~----~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~ 122 (413)
+++.+.+.+...|+ ++|+.|.+.++ .+.+++++++.||||+|||++|++|++.... .+.+++|.|||++|..
T Consensus 231 ~~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq~ 306 (850)
T TIGR01407 231 LSSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQS 306 (850)
T ss_pred ccHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHHH
Confidence 34467777777887 48999997655 5566888999999999999999999987655 2348999999999999
Q ss_pred HHHH-HHHHhhcccC--ceEEEEECCcchH--------------------------------------------------
Q 015093 123 QIEK-VMRALGDYMG--VKVHACVGGTSVR-------------------------------------------------- 149 (413)
Q Consensus 123 q~~~-~~~~~~~~~~--~~~~~~~~~~~~~-------------------------------------------------- 149 (413)
|+.. ++..+....+ +++..+.|..++-
T Consensus 307 Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~ 386 (850)
T TIGR01407 307 QLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFF 386 (850)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhH
Confidence 9855 5555443333 5555555433210
Q ss_pred ---------------------HHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC-------c--
Q 015093 150 ---------------------EDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-------F-- 199 (413)
Q Consensus 150 ---------------------~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-------~-- 199 (413)
...+.....++|+|+++..|+..+......+...+++|+||||++.+.. .
T Consensus 387 ~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~ 466 (850)
T TIGR01407 387 AQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQEELDY 466 (850)
T ss_pred HHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcceeCH
Confidence 0000112346899999999988775443333445899999999875310 0
Q ss_pred ---HHH----------------------------------------------------------------HHHHHhh---
Q 015093 200 ---KDQ----------------------------------------------------------------IYDIFQH--- 209 (413)
Q Consensus 200 ---~~~----------------------------------------------------------------~~~~~~~--- 209 (413)
... +...+..
T Consensus 467 ~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~ 546 (850)
T TIGR01407 467 ADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKD 546 (850)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 000 0000000
Q ss_pred ------------------C---------------------------CCCceEEEEeeeCChh-HHHHHHHhcCCC-EE-E
Q 015093 210 ------------------L---------------------------PGKIQVGVFSATMPPE-ALEITRKFMNKP-VR-I 241 (413)
Q Consensus 210 ------------------~---------------------------~~~~~~i~lSAT~~~~-~~~~~~~~~~~~-~~-~ 241 (413)
. +....+|++|||+... ..+.....++-. .. .
T Consensus 547 ~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~ 626 (850)
T TIGR01407 547 DFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFN 626 (850)
T ss_pred HHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccc
Confidence 0 0124688999998732 233444334422 11 1
Q ss_pred EecCCccccCCceEEEEE--eC-----ccccHHHHHHHHHH---hcCCCcEEEEEcCcccHHHHHHHHhh----CCCeeE
Q 015093 242 LVKRDELTLEGIKQFHVN--VD-----KEEWKLDTLCDLYE---TLAITQSVIFVNTRRKVDWLTDQMRS----RDHTVS 307 (413)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~l~~~~~---~~~~~~~lIf~~~~~~a~~l~~~l~~----~~~~~~ 307 (413)
......+....-...+.. .+ ..+.....+...+. ....+++|||++|.+.++.+++.|.. .++.
T Consensus 627 ~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~-- 704 (850)
T TIGR01407 627 TIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYE-- 704 (850)
T ss_pred eecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCce--
Confidence 111111111111112211 11 11122222332222 22457999999999999999999975 2333
Q ss_pred eecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCC--EEEEcCCCCC--------------------------
Q 015093 308 ATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVS--LVINYDLPTQ-------------------------- 359 (413)
Q Consensus 308 ~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~--~vi~~~~~~s-------------------------- 359 (413)
.+..+.. ..|.++++.|++++..||++|+.+.+|+|+|+.. .||+.+.|..
T Consensus 705 ~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~ 783 (850)
T TIGR01407 705 VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYV 783 (850)
T ss_pred EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhh
Confidence 2333332 4688899999999999999999999999999754 5677776631
Q ss_pred ----hhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 360 ----PENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 360 ----~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
...+.|.+||+-|...+.-++++++..
T Consensus 784 lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 784 LPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred HHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 133589999999987655455555543
No 114
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=1.2e-22 Score=191.42 Aligned_cols=315 Identities=18% Similarity=0.197 Sum_probs=219.2
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.|++.|.-+.-.+..|+ +..+.||+|||+++.++++..... +..+.+++|+.-|+.|-++.+..+...+|+++.+
T Consensus 78 r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~---G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~ 152 (764)
T PRK12326 78 RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ---GRRVHVITVNDYLARRDAEWMGPLYEALGLTVGW 152 (764)
T ss_pred CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc---CCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 79999999998888776 889999999999998888765444 3489999999999999999999999999999999
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHH-HHHHcC------CCCCCCccEEEEccchhhh-ccC--------------c
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVF-DMLRRQ------SLRPDYIRMFVLDEADEML-SRG--------------F 199 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~-~~~~~~------~~~~~~~~~iIiDE~h~~~-~~~--------------~ 199 (413)
+.++.......... .++|+++|...|- +.++.. ......+.+.|+||+|.++ +.. .
T Consensus 153 i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~~~~~ 230 (764)
T PRK12326 153 ITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTPGEAP 230 (764)
T ss_pred ECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCCcchhH
Confidence 98887755444333 5899999988763 222221 1223447899999999643 110 0
Q ss_pred HHHHHHHHhhCCC---------------------------------------------------------C---------
Q 015093 200 KDQIYDIFQHLPG---------------------------------------------------------K--------- 213 (413)
Q Consensus 200 ~~~~~~~~~~~~~---------------------------------------------------------~--------- 213 (413)
...+..+...+.. +
T Consensus 231 y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dge 310 (764)
T PRK12326 231 RGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIVRDGK 310 (764)
T ss_pred HHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEEECCE
Confidence 0001111111100 0
Q ss_pred ----------------------------------------------------ceEEEEeeeCChhHHHHHHHhcCCCEEE
Q 015093 214 ----------------------------------------------------IQVGVFSATMPPEALEITRKFMNKPVRI 241 (413)
Q Consensus 214 ----------------------------------------------------~~~i~lSAT~~~~~~~~~~~~~~~~~~~ 241 (413)
.++.+||+|......++...|....+ .
T Consensus 311 V~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv-~ 389 (764)
T PRK12326 311 VHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVS-V 389 (764)
T ss_pred EEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEE-E
Confidence 36778888886655554444443333 2
Q ss_pred EecCCccccCCceEEEEEeCccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHH
Q 015093 242 LVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRD 319 (413)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~ 319 (413)
.+...+........ ..+.....+..++..-+... .+.|+||.+.|++..+.+++.|.+.++++.++++.....| .
T Consensus 390 IPtnkp~~R~d~~d--~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~E-A 466 (764)
T PRK12326 390 IPPNKPNIREDEAD--RVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEE-A 466 (764)
T ss_pred CCCCCCceeecCCC--ceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhH-H
Confidence 22222211111111 11222345665555544332 6679999999999999999999999999999998855433 3
Q ss_pred HHHHHHhcCC-CeEEEEeCccccCCCCC---------------CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEe
Q 015093 320 IIMREFRSGS-SRVLITTDLLARGIDVQ---------------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV 383 (413)
Q Consensus 320 ~~~~~f~~~~-~~vli~t~~~~~G~d~~---------------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 383 (413)
+++. +.|+ ..|.|||+++++|.|+. +=-+||....+.|...-.|..||+||.|.+|.+.+|+
T Consensus 467 ~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~l 544 (764)
T PRK12326 467 RIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFV 544 (764)
T ss_pred HHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEE
Confidence 3333 3343 45889999999999985 2346788888899999999999999999999999999
Q ss_pred ccccHH
Q 015093 384 TRDDDR 389 (413)
Q Consensus 384 ~~~~~~ 389 (413)
+-.|.-
T Consensus 545 SleDdl 550 (764)
T PRK12326 545 SLEDDV 550 (764)
T ss_pred EcchhH
Confidence 977643
No 115
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=5.7e-25 Score=194.43 Aligned_cols=313 Identities=17% Similarity=0.168 Sum_probs=210.6
Q ss_pred CCcHHHHhhhhhhhCC---CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCce
Q 015093 62 KPSAIQQRGIVPFCKG---LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVK 138 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~---~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~ 138 (413)
.+||||.+++..+.-+ ++.+|+.|||+|||++.+-++... +.++||+|.+..-+.||...+..|...-+..
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti------kK~clvLcts~VSVeQWkqQfk~wsti~d~~ 375 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI------KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQ 375 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee------cccEEEEecCccCHHHHHHHHHhhcccCccc
Confidence 7999999999988764 569999999999998875444322 3489999999999999999999998766777
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc--------CCCCCCCccEEEEccchhhhccCcHHHHHHHHhhC
Q 015093 139 VHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR--------QSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHL 210 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~--------~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 210 (413)
+..++.+... ....++.|+|+|+.++...-.+ .-+..+.++++++||+|-+.+..|...+.-+...+
T Consensus 376 i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHc 450 (776)
T KOG1123|consen 376 ICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHC 450 (776)
T ss_pred eEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHh
Confidence 7777765431 2345789999999988532211 11223458999999999887766665555544444
Q ss_pred CCCceEEEEeeeCChhHHHHHHHhc--C-------------CCE--EEEec--CCccc--------cCCc--eEEEEEeC
Q 015093 211 PGKIQVGVFSATMPPEALEITRKFM--N-------------KPV--RILVK--RDELT--------LEGI--KQFHVNVD 261 (413)
Q Consensus 211 ~~~~~~i~lSAT~~~~~~~~~~~~~--~-------------~~~--~~~~~--~~~~~--------~~~~--~~~~~~~~ 261 (413)
.+++|||+-.+...+....+ + ... .+... .-... .... +......+
T Consensus 451 -----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMN 525 (776)
T KOG1123|consen 451 -----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMN 525 (776)
T ss_pred -----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecC
Confidence 47899998643322211110 0 000 00000 00000 0000 00111111
Q ss_pred cc-ccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhc-CCCeEEEEeCcc
Q 015093 262 KE-EWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRS-GSSRVLITTDLL 339 (413)
Q Consensus 262 ~~-~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~ 339 (413)
.. -.....|....++ .+.|+|||..+.-....++-.|.+ .+++|.+++.+|-++++.|+. ..++.++.+.+.
T Consensus 526 P~KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVg 599 (776)
T KOG1123|consen 526 PNKFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVG 599 (776)
T ss_pred cchhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEEeecc
Confidence 11 1123334444444 667999999887766666665533 568899999999999999984 568889999999
Q ss_pred ccCCCCCCCCEEEEcCCC-CChhHHHhhhcccCCCCC---c---ceEEEEeccccHHHHHHHHH
Q 015093 340 ARGIDVQQVSLVINYDLP-TQPENYLHRIGRSGRFGR---K---GVAINFVTRDDDRMLADIQR 396 (413)
Q Consensus 340 ~~G~d~~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~g~---~---g~~~~~~~~~~~~~~~~~~~ 396 (413)
...+|+|..+++|..+.- -|..+-.||.||+.|+.+ + ...+.+++....++.++-++
T Consensus 600 DtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStKR 663 (776)
T KOG1123|consen 600 DTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTKR 663 (776)
T ss_pred CccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhhh
Confidence 999999999999987653 467788999999999753 2 45677777777787776543
No 116
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.92 E-value=2.1e-23 Score=201.86 Aligned_cols=330 Identities=18% Similarity=0.218 Sum_probs=233.9
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHH
Q 015093 47 LKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEK 126 (413)
Q Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~ 126 (413)
.++...+.+....-..-+..+...++++.+++.++|.|.||+|||......+++.....+...++++.-|++--|...++
T Consensus 158 ~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAe 237 (924)
T KOG0920|consen 158 KSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAE 237 (924)
T ss_pred hhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHH
Confidence 33444444444444467888999999999999999999999999999988888876555567789999999866666666
Q ss_pred HHH-HhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhh-hccCcHHHHH
Q 015093 127 VMR-ALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEM-LSRGFKDQIY 204 (413)
Q Consensus 127 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~-~~~~~~~~~~ 204 (413)
++. +.+...+..|++..+..... .....+.++|.+.|++.+... -.+..+..||+||+|+= .+.++...+.
T Consensus 238 RVa~ER~~~~g~~VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~~-~~l~~vthiivDEVHER~i~~DflLi~l 310 (924)
T KOG0920|consen 238 RVAKERGESLGEEVGYQVRLESKR------SRETRLLFCTTGVLLRRLQSD-PTLSGVTHIIVDEVHERSINTDFLLILL 310 (924)
T ss_pred HHHHHhccccCCeeeEEEeeeccc------CCceeEEEecHHHHHHHhccC-cccccCceeeeeeEEEccCCcccHHHHH
Confidence 553 33444455665555443321 223689999999999998873 34666899999999973 3455666655
Q ss_pred HHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccc----------------cCCceEEEEEeC-------
Q 015093 205 DIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT----------------LEGIKQFHVNVD------- 261 (413)
Q Consensus 205 ~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~------- 261 (413)
+.+-...+..++|+||||.. .+....|++....+.+....++ .....+......
T Consensus 311 k~lL~~~p~LkvILMSAT~d---ae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (924)
T KOG0920|consen 311 KDLLPRNPDLKVILMSATLD---AELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLAR 387 (924)
T ss_pred HHHhhhCCCceEEEeeeecc---hHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCcccccc
Confidence 66656667899999999996 3344555554433333221110 000000000000
Q ss_pred ----ccccHHHHHHHHH----HhcCCCcEEEEEcCcccHHHHHHHHhhC-------CCeeEeecCCCCHHHHHHHHHHHh
Q 015093 262 ----KEEWKLDTLCDLY----ETLAITQSVIFVNTRRKVDWLTDQMRSR-------DHTVSATHGDMDQNSRDIIMREFR 326 (413)
Q Consensus 262 ----~~~~~~~~l~~~~----~~~~~~~~lIf~~~~~~a~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~ 326 (413)
..+.....+..++ .....|.+|||.|+..+...+++.|... .+-+..+|+.++..+++.+...--
T Consensus 388 ~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp 467 (924)
T KOG0920|consen 388 LKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPP 467 (924)
T ss_pred chhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCC
Confidence 0012233333333 2334678999999999999999999642 256788999999999999999888
Q ss_pred cCCCeEEEEeCccccCCCCCCCCEEEEcCCC------------------CChhHHHhhhcccCCCCCcceEEEEecccc
Q 015093 327 SGSSRVLITTDLLARGIDVQQVSLVINYDLP------------------TQPENYLHRIGRSGRFGRKGVAINFVTRDD 387 (413)
Q Consensus 327 ~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~------------------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 387 (413)
.|..+|+++|++++.+|.++++-.||+.+.. .|.....||.||+||. ++|.||-+++...
T Consensus 468 ~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 468 KGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred CCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 9999999999999999999999999976542 3667789999999997 7899999998753
No 117
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=2.5e-23 Score=201.44 Aligned_cols=125 Identities=18% Similarity=0.254 Sum_probs=110.4
Q ss_pred ccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCcccc
Q 015093 264 EWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLAR 341 (413)
Q Consensus 264 ~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~ 341 (413)
..+...+...+... .+.++||||+|++.++.+++.|.+.++++..+|+ .+.+|+..+..|..+...|+|||+++++
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 45777888877554 6679999999999999999999999999999997 4778899999999999999999999999
Q ss_pred CCCCC---CCC-----EEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 342 GIDVQ---QVS-----LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 342 G~d~~---~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
|+|++ .+. +||....|.|...+.|+.||+||.|.+|.+.+|++..|.-+
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lm 715 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELM 715 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHH
Confidence 99999 443 34788889999999999999999999999999999877643
No 118
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=6.2e-24 Score=187.27 Aligned_cols=327 Identities=16% Similarity=0.203 Sum_probs=225.7
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
.++|.+.++++...+.+++..-...+.++.+..+.+..++-++++|.||||||.....+.++...... ..+...-|.+
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~--~~v~CTQprr 101 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL--TGVACTQPRR 101 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc--cceeecCchH
Confidence 79999999999999999998877888889999999989999999999999999887666665544333 2455666776
Q ss_pred HHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchh--hhc
Q 015093 119 ELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE--MLS 196 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~--~~~ 196 (413)
.-+.+.+. +.+..+++..+.-.|......+ +.....-.-++|.++|++....... +..+++||+||||+ +..
T Consensus 102 vaamsva~---RVadEMDv~lG~EVGysIrfEd--C~~~~T~Lky~tDgmLlrEams~p~-l~~y~viiLDeahERtlAT 175 (699)
T KOG0925|consen 102 VAAMSVAQ---RVADEMDVTLGEEVGYSIRFED--CTSPNTLLKYCTDGMLLREAMSDPL-LGRYGVIILDEAHERTLAT 175 (699)
T ss_pred HHHHHHHH---HHHHHhccccchhccccccccc--cCChhHHHHHhcchHHHHHHhhCcc-cccccEEEechhhhhhHHH
Confidence 66655444 3444455554444443321111 1111223447788888877666554 45589999999997 222
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCc---cccHHHHHHHH
Q 015093 197 RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDK---EEWKLDTLCDL 273 (413)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~ 273 (413)
......+..+....+ +.++|.+|||... ..++.|+++...+.+.. ..+ ...++..... .+..+..+.++
T Consensus 176 DiLmGllk~v~~~rp-dLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg--~~P--vEi~Yt~e~erDylEaairtV~qi 247 (699)
T KOG0925|consen 176 DILMGLLKEVVRNRP-DLKLVVMSATLDA---EKFQRYFGNAPLLAVPG--THP--VEIFYTPEPERDYLEAAIRTVLQI 247 (699)
T ss_pred HHHHHHHHHHHhhCC-CceEEEeecccch---HHHHHHhCCCCeeecCC--CCc--eEEEecCCCChhHHHHHHHHHHHH
Confidence 223445556666664 8999999999842 34556666655444433 222 2223332222 23445566666
Q ss_pred HHhcCCCcEEEEEcCcccHHHHHHHHhhC---------CCeeEeecCCCCHHHHHHHHHHHhc---C--CCeEEEEeCcc
Q 015093 274 YETLAITQSVIFVNTRRKVDWLTDQMRSR---------DHTVSATHGDMDQNSRDIIMREFRS---G--SSRVLITTDLL 339 (413)
Q Consensus 274 ~~~~~~~~~lIf~~~~~~a~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~---~--~~~vli~t~~~ 339 (413)
......|.+|+|..+.++.+..++.+... ...+..++ +.++..+.+.... | ..+|+|+|+++
T Consensus 248 h~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstnia 323 (699)
T KOG0925|consen 248 HMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIA 323 (699)
T ss_pred HhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecch
Confidence 66667899999999999999999988743 23566666 4444444433321 2 35799999999
Q ss_pred ccCCCCCCCCEEEEcCC------------------CCChhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 340 ARGIDVQQVSLVINYDL------------------PTQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 340 ~~G~d~~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
+..+.++.+.+||..+. |.|..+-.||.||+||. ++|+|+.+|++.
T Consensus 324 etsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 324 ETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred heeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 99999999999997553 67889999999999997 799999999875
No 119
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=2.1e-22 Score=187.51 Aligned_cols=320 Identities=17% Similarity=0.192 Sum_probs=217.7
Q ss_pred CCcHHHHhhhhhhhC----CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 62 KPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~----~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|.+||++.++.+.+ +...|+-..+|-|||...+..+......+....++|||||. .+..||..++.+|....
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~~-- 281 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPPF-- 281 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcce--
Confidence 678999999988765 45689999999999987654444333332444689999996 77889999999998744
Q ss_pred eEEEEECCcch---------HHHHH----HHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHH
Q 015093 138 KVHACVGGTSV---------REDQR----ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIY 204 (413)
Q Consensus 138 ~~~~~~~~~~~---------~~~~~----~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~ 204 (413)
++.++++.... ..... .......|+++|++.|. +....+....++++|+||.|.+-+++ ..+.
T Consensus 282 rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r--~~~d~l~~~~W~y~ILDEGH~IrNpn--s~is 357 (923)
T KOG0387|consen 282 RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR--IQGDDLLGILWDYVILDEGHRIRNPN--SKIS 357 (923)
T ss_pred EEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhc--ccCcccccccccEEEecCcccccCCc--cHHH
Confidence 56666654431 11111 11234579999999875 33334444558999999999997665 4445
Q ss_pred HHHhhCCCCceEEEEeeeCC-hhHHHHHH-----------------HhcCCC----------------------------
Q 015093 205 DIFQHLPGKIQVGVFSATMP-PEALEITR-----------------KFMNKP---------------------------- 238 (413)
Q Consensus 205 ~~~~~~~~~~~~i~lSAT~~-~~~~~~~~-----------------~~~~~~---------------------------- 238 (413)
..+..++. .+.|.+|+||. +++.++.. ..+..|
T Consensus 358 lackki~T-~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI 436 (923)
T KOG0387|consen 358 LACKKIRT-VHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLI 436 (923)
T ss_pred HHHHhccc-cceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 55556654 44566899984 11111100 000000
Q ss_pred ----------------------EEEEecCC----------------------cc--------------ccCCceEE--EE
Q 015093 239 ----------------------VRILVKRD----------------------EL--------------TLEGIKQF--HV 258 (413)
Q Consensus 239 ----------------------~~~~~~~~----------------------~~--------------~~~~~~~~--~~ 258 (413)
..+...-. .. +|.-.... ..
T Consensus 437 ~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~ 516 (923)
T KOG0387|consen 437 SPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDE 516 (923)
T ss_pred HHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCccccc
Confidence 00000000 00 00000000 00
Q ss_pred -------EeCccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHh-hCCCeeEeecCCCCHHHHHHHHHHHhcC
Q 015093 259 -------NVDKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMR-SRDHTVSATHGDMDQNSRDIIMREFRSG 328 (413)
Q Consensus 259 -------~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 328 (413)
-......+...+..+++.+ .+.++|+|..++....-+-..|. ..++....+.|.++...|..+++.|+++
T Consensus 517 ~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~ 596 (923)
T KOG0387|consen 517 KQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNED 596 (923)
T ss_pred ccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCC
Confidence 0011134677777777665 45699999999999998888888 5899999999999999999999999977
Q ss_pred CC-e-EEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcc--eEEEEeccccHH
Q 015093 329 SS-R-VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG--VAINFVTRDDDR 389 (413)
Q Consensus 329 ~~-~-vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g--~~~~~~~~~~~~ 389 (413)
.. . +|++|.+.+.|+|+.+++-||+++|.|+++.=.|.--|+.|.|+.. .+|.+++....+
T Consensus 597 ~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIE 661 (923)
T KOG0387|consen 597 ESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIE 661 (923)
T ss_pred CceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHH
Confidence 64 3 5688899999999999999999999999999999999999999764 456667776554
No 120
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=2.7e-22 Score=193.64 Aligned_cols=316 Identities=18% Similarity=0.223 Sum_probs=217.3
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.|+++|.-.--.+..|+ +..+.||+|||+++.++++..... +..+.+++|+..||.+-++.+..+...+|+++.+
T Consensus 82 ~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~---G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~ 156 (913)
T PRK13103 82 RHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALS---GKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGI 156 (913)
T ss_pred CcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 78889987776665554 999999999999998888655444 3489999999999999999999999999999999
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcC------CCCCCCccEEEEccchhhh-ccC---------------
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRV-FDMLRRQ------SLRPDYIRMFVLDEADEML-SRG--------------- 198 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~------~~~~~~~~~iIiDE~h~~~-~~~--------------- 198 (413)
+.++.......... .++|+++|...| ++.++.. ......+.++|+||+|.++ +..
T Consensus 157 i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~~~~~ 234 (913)
T PRK13103 157 VTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAEDSSK 234 (913)
T ss_pred ECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCCccchH
Confidence 98887655544443 389999999887 2333221 1123568899999999753 110
Q ss_pred -cH------H------------------------------------HHHHHH---------hhC----------------
Q 015093 199 -FK------D------------------------------------QIYDIF---------QHL---------------- 210 (413)
Q Consensus 199 -~~------~------------------------------------~~~~~~---------~~~---------------- 210 (413)
+. . .+...+ ..+
T Consensus 235 ~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~~AL 314 (913)
T PRK13103 235 LYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVYAGL 314 (913)
T ss_pred HHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHHHHHH
Confidence 00 0 000101 000
Q ss_pred ------CCC-------------------------------------------------------------ceEEEEeeeC
Q 015093 211 ------PGK-------------------------------------------------------------IQVGVFSATM 223 (413)
Q Consensus 211 ------~~~-------------------------------------------------------------~~~i~lSAT~ 223 (413)
..+ .++.+||+|.
T Consensus 315 ~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa 394 (913)
T PRK13103 315 RAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTGTA 394 (913)
T ss_pred HHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCCCC
Confidence 000 3566777777
Q ss_pred ChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhh
Q 015093 224 PPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRS 301 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~ 301 (413)
.....++...|....+.+.. ..+.......... +.....++.++..-+... .+.|+||-+.|++..+.+++.|++
T Consensus 395 ~te~~Ef~~iY~l~Vv~IPT-nkP~~R~D~~d~v--y~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~ 471 (913)
T PRK13103 395 DTEAFEFRQIYGLDVVVIPP-NKPLARKDFNDLV--YLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKK 471 (913)
T ss_pred HHHHHHHHHHhCCCEEECCC-CCCcccccCCCeE--EcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHH
Confidence 65554444444333333222 2222222222111 233345666666555433 567999999999999999999999
Q ss_pred CCCeeEeecCCCCHHHHHHHHHHHhcC-CCeEEEEeCccccCCCCC----------------------------------
Q 015093 302 RDHTVSATHGDMDQNSRDIIMREFRSG-SSRVLITTDLLARGIDVQ---------------------------------- 346 (413)
Q Consensus 302 ~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vli~t~~~~~G~d~~---------------------------------- 346 (413)
.++++.+++......|.+.+ . +.| ...|.|||+++++|.|+.
T Consensus 472 ~gi~h~VLNAk~~~~EA~II-a--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V 548 (913)
T PRK13103 472 EGIEHKVLNAKYHEKEAEII-A--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQV 548 (913)
T ss_pred cCCcHHHhccccchhHHHHH-H--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHH
Confidence 99999888887654333333 3 344 345899999999999984
Q ss_pred ---CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 347 ---QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 347 ---~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
+=-+||-...+.|...-.|..||+||.|.+|.+.+|++-.|.-+
T Consensus 549 ~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lm 595 (913)
T PRK13103 549 IEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLM 595 (913)
T ss_pred HHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 23357778888899999999999999999999999999876543
No 121
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.90 E-value=1.6e-21 Score=188.64 Aligned_cols=132 Identities=26% Similarity=0.370 Sum_probs=116.0
Q ss_pred ccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCcccc
Q 015093 264 EWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLAR 341 (413)
Q Consensus 264 ~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~ 341 (413)
......+...++.. .+.+++|||++++.++.+++.|.+.|+++..+|++++..+|.+++..|+.|++.|+|||+.+++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 34555555555543 4568999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEcC-----CCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHH
Q 015093 342 GIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQR 396 (413)
Q Consensus 342 G~d~~~~~~vi~~~-----~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 396 (413)
|+|+|.+++|++++ .|.+..+|+|++||+||. ..|.++++++..+..+...+.+
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 99999999999887 688999999999999998 6899999999887666665544
No 122
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.90 E-value=7.5e-22 Score=187.17 Aligned_cols=159 Identities=18% Similarity=0.116 Sum_probs=116.8
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhccc-CceEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM-GVKVH 140 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~-~~~~~ 140 (413)
.|..||.+.+...-.+++++|++||.+|||++...++-..++....+ .++++.|+++|++|....+....... -.+-.
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~-VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSD-VVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCC-EEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 68899999999999999999999999999998877777666665544 89999999999999876665543221 11112
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC---CCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEE
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ---SLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVG 217 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~---~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i 217 (413)
.+.|....+-. .-.-.|+|+|+-|+-+...+... ......+++||+||+|.+.+..-...+..++... .++++
T Consensus 590 sl~g~ltqEYs--inp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~CP~L 665 (1330)
T KOG0949|consen 590 SLLGDLTQEYS--INPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PCPFL 665 (1330)
T ss_pred hhHhhhhHHhc--CCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CCCee
Confidence 22222221111 11225899999999999888763 3334558999999999988776666666666666 47799
Q ss_pred EEeeeCCh
Q 015093 218 VFSATMPP 225 (413)
Q Consensus 218 ~lSAT~~~ 225 (413)
++|||..+
T Consensus 666 ~LSATigN 673 (1330)
T KOG0949|consen 666 VLSATIGN 673 (1330)
T ss_pred EEecccCC
Confidence 99999864
No 123
>COG4889 Predicted helicase [General function prediction only]
Probab=99.89 E-value=8.7e-24 Score=198.02 Aligned_cols=326 Identities=18% Similarity=0.204 Sum_probs=197.2
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCC----CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG----LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA 115 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~----~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~ 115 (413)
..|+.+.. .+....+.-..-..|||+|+.|+++..++ ...=+.+.||+|||++.+- +.+.+.. .++|+++
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~----~~iL~Lv 213 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA----ARILFLV 213 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh----hheEeec
Confidence 34444433 34455555555668999999999988764 3467788999999998854 3444433 4899999
Q ss_pred ccHHHHHHHHHHHHHhhcccCceEEEEECCcc-----------------------hHHHH--HHHhcCCcEEEeChHHHH
Q 015093 116 PTRELAQQIEKVMRALGDYMGVKVHACVGGTS-----------------------VREDQ--RILSAGVHVVVGTPGRVF 170 (413)
Q Consensus 116 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~--~~~~~~~~Iii~T~~~l~ 170 (413)
|+++|..|+.+++..-.. ..+....+..+.. ..... .....+--|+++|++++.
T Consensus 214 PSIsLLsQTlrew~~~~~-l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~ 292 (1518)
T COG4889 214 PSISLLSQTLREWTAQKE-LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLP 292 (1518)
T ss_pred chHHHHHHHHHHHhhccC-ccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchH
Confidence 999999999998865321 2222222222111 00111 111234568999999998
Q ss_pred HHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCC-----CCceEEEEeeeCChhHHHHHH-------------
Q 015093 171 DMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLP-----GKIQVGVFSATMPPEALEITR------------- 232 (413)
Q Consensus 171 ~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~-----~~~~~i~lSAT~~~~~~~~~~------------- 232 (413)
..-+.....+..+++||+||||+...-.....-..-+.+.. +..+.+.|||||.-..+....
T Consensus 293 ~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMD 372 (1518)
T COG4889 293 RIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMD 372 (1518)
T ss_pred HHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccc
Confidence 88777777788899999999999653221111111111111 134578899999521111000
Q ss_pred --HhcCCCEEEEecCCccc----cCCceEEEEEeCc---------------cccHHHHHHHHH-------Hhc-------
Q 015093 233 --KFMNKPVRILVKRDELT----LEGIKQFHVNVDK---------------EEWKLDTLCDLY-------ETL------- 277 (413)
Q Consensus 233 --~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---------------~~~~~~~l~~~~-------~~~------- 277 (413)
..+++..+ .....++. ....+.....++. ..-..+....++ ++.
T Consensus 373 De~~fGeef~-rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~ 451 (1518)
T COG4889 373 DELTFGEEFH-RLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLK 451 (1518)
T ss_pred hhhhhchhhh-cccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcccccccc
Confidence 00000000 00000000 0111111111111 111222222222 111
Q ss_pred -------CCCcEEEEEcCcccHHHHHHHHhh---------------CCCeeEeecCCCCHHHHHHHHHH---HhcCCCeE
Q 015093 278 -------AITQSVIFVNTRRKVDWLTDQMRS---------------RDHTVSATHGDMDQNSRDIIMRE---FRSGSSRV 332 (413)
Q Consensus 278 -------~~~~~lIf~~~~~~a~~l~~~l~~---------------~~~~~~~~~~~~~~~~r~~~~~~---f~~~~~~v 332 (413)
+..+.+-||.++++.+.+++.+.. ..+.+..+.|.|+-.+|.+.+.. |....++|
T Consensus 452 ~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckI 531 (1518)
T COG4889 452 NIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKI 531 (1518)
T ss_pred CCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchhee
Confidence 112568899999998888877753 12456677888998888655443 34567889
Q ss_pred EEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCC
Q 015093 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 373 (413)
Q Consensus 333 li~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 373 (413)
|-...++.+|+|+|.++.||++++-.|..+.+|.+||++|-
T Consensus 532 lSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 532 LSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred eccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 98889999999999999999999999999999999999995
No 124
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.89 E-value=7.2e-22 Score=176.65 Aligned_cols=172 Identities=26% Similarity=0.292 Sum_probs=134.0
Q ss_pred ceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHh--cCCCcEEEEEcCccc
Q 015093 214 IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET--LAITQSVIFVNTRRK 291 (413)
Q Consensus 214 ~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lIf~~~~~~ 291 (413)
.|+|++||||.+.-.. .--+..+...+.+.....+.+. +......++.|..-++. ..+.++||-+=+++.
T Consensus 387 ~q~i~VSATPg~~E~e---~s~~~vveQiIRPTGLlDP~ie-----vRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 387 PQTIYVSATPGDYELE---QSGGNVVEQIIRPTGLLDPEIE-----VRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred CCEEEEECCCChHHHH---hccCceeEEeecCCCCCCCcee-----eecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 5899999999754322 2223444444544444433322 33334455555554433 255799999999999
Q ss_pred HHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC-----CCChhHHHhh
Q 015093 292 VDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL-----PTQPENYLHR 366 (413)
Q Consensus 292 a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~-----~~s~~~~~Q~ 366 (413)
|+.+.++|++.|+++..+|++...-+|.+++..++.|..+|||+.+.+.+|+|+|.+..|.+++. ..|..+++|.
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988765 4688999999
Q ss_pred hcccCCCCCcceEEEEeccccHHHHHHH
Q 015093 367 IGRSGRFGRKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 367 ~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 394 (413)
+||+.|. -.|+++++.+.-...+-+.+
T Consensus 539 IGRAARN-~~GkvIlYAD~iT~sM~~Ai 565 (663)
T COG0556 539 IGRAARN-VNGKVILYADKITDSMQKAI 565 (663)
T ss_pred HHHHhhc-cCCeEEEEchhhhHHHHHHH
Confidence 9999995 56999999887666555544
No 125
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.89 E-value=1.2e-20 Score=179.86 Aligned_cols=320 Identities=18% Similarity=0.149 Sum_probs=207.3
Q ss_pred CCcHHHHhhhhhhhC---C-------CcEEEeCCCCCchhHHHHHHHHHhcccccC----ceeEEEEcccHHHHHHHHHH
Q 015093 62 KPSAIQQRGIVPFCK---G-------LDVIQQAQSGTGKTATFCSGILQQLDYESL----QCQALVLAPTRELAQQIEKV 127 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~---~-------~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~----~~~~lvl~P~~~l~~q~~~~ 127 (413)
.++|+|+++++-+-+ | ..+|+...+|+|||+..+..++..+..... -.+.|||+|. .|+..|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 689999999987754 1 348999999999999987777766654432 1589999996 788889999
Q ss_pred HHHhhcccCceEEEEECCcchH--HHHHHH-----hcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcH
Q 015093 128 MRALGDYMGVKVHACVGGTSVR--EDQRIL-----SAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFK 200 (413)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~ 200 (413)
+.+|.....+....+++..... ...+.+ .-...|.+.+++++....+. +....++++|+||.|+.-+. .
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~--~ 392 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS--D 392 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch--h
Confidence 9999876666666666666530 011111 11346888899998765554 33445799999999998543 4
Q ss_pred HHHHHHHhhCCCCceEEEEeeeCC-hhHHHHHHHh-----------------cCCCE-----------------------
Q 015093 201 DQIYDIFQHLPGKIQVGVFSATMP-PEALEITRKF-----------------MNKPV----------------------- 239 (413)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~lSAT~~-~~~~~~~~~~-----------------~~~~~----------------------- 239 (413)
..+...+..+. -.+.|++|+||- +++.+....+ +..++
T Consensus 393 s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~ 471 (776)
T KOG0390|consen 393 SLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELR 471 (776)
T ss_pred hHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHH
Confidence 55556666665 345677999984 1111111000 00000
Q ss_pred -------EEEec-CCccccCCceEEEEEeCccc-----------------------------------------------
Q 015093 240 -------RILVK-RDELTLEGIKQFHVNVDKEE----------------------------------------------- 264 (413)
Q Consensus 240 -------~~~~~-~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 264 (413)
..... --....+....+.+.+....
T Consensus 472 ~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~ 551 (776)
T KOG0390|consen 472 ELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTEK 551 (776)
T ss_pred HHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccccc
Confidence 00000 00011122222222222111
Q ss_pred --------------------------cHHHHHHHHH---HhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCH
Q 015093 265 --------------------------WKLDTLCDLY---ETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQ 315 (413)
Q Consensus 265 --------------------------~~~~~l~~~~---~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~ 315 (413)
.++..|..++ ++....++++..|.+...+.+...+.-.|+.+..++|.++.
T Consensus 552 e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~ 631 (776)
T KOG0390|consen 552 EKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSI 631 (776)
T ss_pred cccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCch
Confidence 1222222222 11122234555555556666666666679999999999999
Q ss_pred HHHHHHHHHHhcCCC--e-EEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEE--ecccc
Q 015093 316 NSRDIIMREFRSGSS--R-VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINF--VTRDD 387 (413)
Q Consensus 316 ~~r~~~~~~f~~~~~--~-vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~--~~~~~ 387 (413)
.+|+.+++.|++... . +|.++.+.++|+++-+++.||++|+.|+++.-.|+++|+.|.|++..|++| ++.+.
T Consensus 632 ~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGt 708 (776)
T KOG0390|consen 632 KQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGT 708 (776)
T ss_pred HHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCC
Confidence 999999999997443 3 456677999999999999999999999999999999999999987666554 44443
No 126
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=4.5e-22 Score=185.08 Aligned_cols=304 Identities=17% Similarity=0.211 Sum_probs=197.8
Q ss_pred hhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc---CceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEE--
Q 015093 69 RGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES---LQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACV-- 143 (413)
Q Consensus 69 ~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~---~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~-- 143 (413)
+..++|..+--+||+|.||||||......++++=.... ..+-+-|.-|++.-+..++.+..--...++-.|.+..
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRf 342 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRF 342 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEe
Confidence 55666766777999999999999887655555422211 1335777888887766665554322222333443333
Q ss_pred CCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHh-------hCCC----
Q 015093 144 GGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQ-------HLPG---- 212 (413)
Q Consensus 144 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~-------~~~~---- 212 (413)
.++ ......|.++|.+.|++.+... +.+..++.||+||||+=. -+...+..++. ....
T Consensus 343 d~t--------i~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERS--vnTDILiGmLSRiV~LR~k~~ke~~~ 411 (1172)
T KOG0926|consen 343 DGT--------IGEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERS--VNTDILIGMLSRIVPLRQKYYKEQCQ 411 (1172)
T ss_pred ccc--------cCCCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhcc--chHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 222 2345789999999999888764 456778999999999731 12222222222 2222
Q ss_pred --CceEEEEeeeCChhHHHHHHHhcCC-CEEEEecCCccccCCceEEEEEe--CccccHHHHHHHHHHhcCCCcEEEEEc
Q 015093 213 --KIQVGVFSATMPPEALEITRKFMNK-PVRILVKRDELTLEGIKQFHVNV--DKEEWKLDTLCDLYETLAITQSVIFVN 287 (413)
Q Consensus 213 --~~~~i~lSAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~lIf~~ 287 (413)
..++|.||||+.-......+.++.. |..+.+....++ -..++-..- +...........+.+..+.|-+|||+.
T Consensus 412 ~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfP--VsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvT 489 (1172)
T KOG0926|consen 412 IKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFP--VSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVT 489 (1172)
T ss_pred cCceeEEEEeeeEEecccccCceecCCCCceeeeecccCc--eEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEe
Confidence 5689999999953322222333332 222222222221 111111111 112334556667778889999999999
Q ss_pred CcccHHHHHHHHhhCC----------------------------------------------------------------
Q 015093 288 TRRKVDWLTDQMRSRD---------------------------------------------------------------- 303 (413)
Q Consensus 288 ~~~~a~~l~~~l~~~~---------------------------------------------------------------- 303 (413)
..+++..+++.|++..
T Consensus 490 GQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~ 569 (1172)
T KOG0926|consen 490 GQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFN 569 (1172)
T ss_pred ChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhh
Confidence 9999999999997420
Q ss_pred -----------------------------------CeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCC
Q 015093 304 -----------------------------------HTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348 (413)
Q Consensus 304 -----------------------------------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 348 (413)
.-+..+++-++..++.++++.-..|..-++|+|+++++.+.+|++
T Consensus 570 ~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgI 649 (1172)
T KOG0926|consen 570 ALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGI 649 (1172)
T ss_pred ccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCe
Confidence 114445555667777777777778888899999999999999999
Q ss_pred CEEEEcCCC------------------CChhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 349 SLVINYDLP------------------TQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 349 ~~vi~~~~~------------------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
+.||..+.. .|..+--||+||+||.| +|+||.+|+..
T Consensus 650 kYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 650 KYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred eEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 999986642 25666789999999997 79999999764
No 127
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.89 E-value=5.6e-23 Score=199.16 Aligned_cols=328 Identities=18% Similarity=0.179 Sum_probs=221.4
Q ss_pred CCCcHHHHhhhhhhh----CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 61 EKPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~----~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
.+||.||.+.++.++ .++++|+...+|-|||...+..+-......+..+..|||+|...+. .|.+++..+. +
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~-~W~~ef~~w~---~ 444 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTIT-AWEREFETWT---D 444 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhH-HHHHHHHHHh---h
Confidence 589999999998765 4788999999999999876544433333333445899999987754 4888899987 6
Q ss_pred ceEEEEECCcchHHHHHHH----hc-----CCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHH
Q 015093 137 VKVHACVGGTSVREDQRIL----SA-----GVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIF 207 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~----~~-----~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~ 207 (413)
.++.+++|........+.. .. ..+++++|++.++.-... +..-.+.++++||||++-+. ...+...+
T Consensus 445 mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~--L~~i~w~~~~vDeahrLkN~--~~~l~~~l 520 (1373)
T KOG0384|consen 445 MNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE--LSKIPWRYLLVDEAHRLKND--ESKLYESL 520 (1373)
T ss_pred hceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh--hccCCcceeeecHHhhcCch--HHHHHHHH
Confidence 6788888877655443332 12 478999999988643322 22233689999999999544 34444446
Q ss_pred hhCCCCceEEEEeeeCC-hhHHHHHHHh-cCCCEEEEe---------------------------------cCCccccCC
Q 015093 208 QHLPGKIQVGVFSATMP-PEALEITRKF-MNKPVRILV---------------------------------KRDELTLEG 252 (413)
Q Consensus 208 ~~~~~~~~~i~lSAT~~-~~~~~~~~~~-~~~~~~~~~---------------------------------~~~~~~~~~ 252 (413)
..+..+. .+++|+||- +++.++.... +..|..+.. ..+...++.
T Consensus 521 ~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k 599 (1373)
T KOG0384|consen 521 NQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPK 599 (1373)
T ss_pred HHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCC
Confidence 6665444 566888884 2333322111 000000000 000000111
Q ss_pred ceEEEE-Ee-----------------------------------------------Ccccc-----HH-----HHHHHH-
Q 015093 253 IKQFHV-NV-----------------------------------------------DKEEW-----KL-----DTLCDL- 273 (413)
Q Consensus 253 ~~~~~~-~~-----------------------------------------------~~~~~-----~~-----~~l~~~- 273 (413)
...+.. .+ +..+. .. ..+..+
T Consensus 600 ~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI 679 (1373)
T KOG0384|consen 600 EETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALI 679 (1373)
T ss_pred cceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHH
Confidence 111110 00 00000 00 122222
Q ss_pred ------------HHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcC---CCeEEEEe
Q 015093 274 ------------YETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSG---SSRVLITT 336 (413)
Q Consensus 274 ------------~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~---~~~vli~t 336 (413)
+... .+.++|||.+-+....-++++|..++++...+.|....+-|+..++.|... ..-+|+||
T Consensus 680 ~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLST 759 (1373)
T KOG0384|consen 680 QSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLST 759 (1373)
T ss_pred HhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEec
Confidence 2222 446999999999999999999999999999999999999999999999864 45689999
Q ss_pred CccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCc--ceEEEEeccccHH--HHHHHHHH
Q 015093 337 DLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GVAINFVTRDDDR--MLADIQRF 397 (413)
Q Consensus 337 ~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~~~~--~~~~~~~~ 397 (413)
.+.+.|||+..+++||+++..|++..=.|+..||+|.|+. -.+|.+++....+ ++..-...
T Consensus 760 RAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~K 824 (1373)
T KOG0384|consen 760 RAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLK 824 (1373)
T ss_pred ccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999986 4577888876543 44433333
No 128
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.88 E-value=1e-20 Score=159.91 Aligned_cols=188 Identities=37% Similarity=0.560 Sum_probs=148.2
Q ss_pred hCCCCCCcHHHHhhhhhhhCC-CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhccc
Q 015093 57 AYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM 135 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~ 135 (413)
..++..|+++|.+++..+... +.+++.+|||+|||.+++.+++..+.... ..+++|++|+..++.|+...+.......
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 356778999999999999988 89999999999999988888888776543 3489999999999999999998877654
Q ss_pred CceEEEEECCcchHHHHHHHhcCC-cEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCc
Q 015093 136 GVKVHACVGGTSVREDQRILSAGV-HVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKI 214 (413)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~-~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~ 214 (413)
........++.............. +++++|++.+.............++++|+||+|.+....+...+..++...++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~ 161 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNV 161 (201)
T ss_pred CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccc
Confidence 423333333333223333333344 9999999999999888766666789999999999876567888888888887789
Q ss_pred eEEEEeeeCChhHHHHHHHhcCCCEEEEecC
Q 015093 215 QVGVFSATMPPEALEITRKFMNKPVRILVKR 245 (413)
Q Consensus 215 ~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~ 245 (413)
+++++|||+++........++.....+....
T Consensus 162 ~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 162 QLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred eEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 9999999999888888888887666555443
No 129
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.88 E-value=3.1e-20 Score=181.22 Aligned_cols=145 Identities=27% Similarity=0.355 Sum_probs=125.4
Q ss_pred cHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccC
Q 015093 265 WKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARG 342 (413)
Q Consensus 265 ~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 342 (413)
.....+...+... .+.+++|||++.+.++.+++.|.+.|+++..+|++++..+|..++..|+.|...|+|||+.+++|
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 3455555555443 45689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCC-----CCChhHHHhhhcccCCCCCcceEEEEecc---------ccHHHHHHHHHHhccccccCCcc
Q 015093 343 IDVQQVSLVINYDL-----PTQPENYLHRIGRSGRFGRKGVAINFVTR---------DDDRMLADIQRFYNVVIEELPAN 408 (413)
Q Consensus 343 ~d~~~~~~vi~~~~-----~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 408 (413)
+|+|.+++||+++. |.+...|+||+||+||. ..|.++++++. .+....+.++..|++...-+|..
T Consensus 510 fdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 588 (652)
T PRK05298 510 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKT 588 (652)
T ss_pred ccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChh
Confidence 99999999998775 67899999999999996 78999999985 35566777788888888887766
Q ss_pred hh
Q 015093 409 VA 410 (413)
Q Consensus 409 ~~ 410 (413)
..
T Consensus 589 ~~ 590 (652)
T PRK05298 589 IK 590 (652)
T ss_pred HH
Confidence 53
No 130
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=2.3e-20 Score=178.62 Aligned_cols=316 Identities=15% Similarity=0.176 Sum_probs=215.3
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.|++.|.-+.-.+..|+ |..+.||-|||+++.+|++-.... |..+-|++.+.-|+..-.+++..+...+|+++++
T Consensus 78 r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~---GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~ 152 (925)
T PRK12903 78 RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT---GKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGI 152 (925)
T ss_pred CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc---CCceEEEecchhhhhhhHHHHHHHHHHhCCceee
Confidence 79999998887776664 899999999999998877543333 3478888999999999899999999999999999
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHH-HHHHcC------CCCCCCccEEEEccchhhh-ccC---------------
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVF-DMLRRQ------SLRPDYIRMFVLDEADEML-SRG--------------- 198 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~-~~~~~~------~~~~~~~~~iIiDE~h~~~-~~~--------------- 198 (413)
...+........ .-.++|+++|...|- +.++.. ......+.+.|+||+|.++ +..
T Consensus 153 i~~~~~~~~rr~--aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~~~~~ 230 (925)
T PRK12903 153 NKANMDPNLKRE--AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSN 230 (925)
T ss_pred eCCCCChHHHHH--hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCCccchH
Confidence 987766444433 345899999998874 334322 1123457889999999643 111
Q ss_pred cHHHHHHHHhhCCC-------------------------------------------------------C----------
Q 015093 199 FKDQIYDIFQHLPG-------------------------------------------------------K---------- 213 (413)
Q Consensus 199 ~~~~~~~~~~~~~~-------------------------------------------------------~---------- 213 (413)
....+..+...+.. +
T Consensus 231 ~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V 310 (925)
T PRK12903 231 LYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKI 310 (925)
T ss_pred HHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEE
Confidence 00111111111100 0
Q ss_pred ---------------------------------------------------ceEEEEeeeCChhHHHHHHHhcCCCEEEE
Q 015093 214 ---------------------------------------------------IQVGVFSATMPPEALEITRKFMNKPVRIL 242 (413)
Q Consensus 214 ---------------------------------------------------~~~i~lSAT~~~~~~~~~~~~~~~~~~~~ 242 (413)
.++.|||+|......++...|....+.++
T Consensus 311 ~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IP 390 (925)
T PRK12903 311 ELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVP 390 (925)
T ss_pred EEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEECC
Confidence 36778888876655555544433333332
Q ss_pred ecCCccccCCceEEEEEeCccccHHHHHHHHHHh-c-CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHH
Q 015093 243 VKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET-L-AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDI 320 (413)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~ 320 (413)
... +......... .+.....+..++..-++. + .+.|+||.|.|++.++.+++.|.+.|++..++++.....+.+
T Consensus 391 Tnk-P~~R~D~~d~--iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~EA~- 466 (925)
T PRK12903 391 TNK-PVIRKDEPDS--IFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREAE- 466 (925)
T ss_pred CCC-CeeeeeCCCc--EEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhHHH-
Confidence 222 1111111111 112234455555554443 2 567999999999999999999999999999999875533333
Q ss_pred HHHHHhcC-CCeEEEEeCccccCCCCCCC--------CEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 321 IMREFRSG-SSRVLITTDLLARGIDVQQV--------SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 321 ~~~~f~~~-~~~vli~t~~~~~G~d~~~~--------~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
++. +.| ...|.|||+++++|.|+.-- -+||....+.|...-.|..||+||.|.+|.+.+|++-.|.-+
T Consensus 467 IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~L~ 543 (925)
T PRK12903 467 IIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLF 543 (925)
T ss_pred HHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchHHH
Confidence 222 445 45688999999999998632 278888888999889999999999999999999998776543
No 131
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.87 E-value=7.9e-21 Score=183.95 Aligned_cols=327 Identities=20% Similarity=0.239 Sum_probs=219.4
Q ss_pred CCcHHHHhhhhhhhC----CCcEEEeCCCCCchhHHHHHHHHHhccccc------CceeEEEEcccHHHHHHHHHHHHHh
Q 015093 62 KPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDYES------LQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~----~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~------~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
.||.||.+.++.+.. +-+.|++..+|-|||+..+--+.....+.+ .....|||||+ .|+.-|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 689999999988754 456999999999999987543332222221 12358999997 7888899999999
Q ss_pred hcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCC
Q 015093 132 GDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLP 211 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 211 (413)
++. +++....|........+.-....+|+|++|+.+.+.+.. +....+.++|+||-|-+. +....+.+..+.+.
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVik--N~ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIK--NSKTKLTKAVKQLR 1127 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceec--chHHHHHHHHHHHh
Confidence 886 566666676655444444445679999999998754432 111236799999999773 34555666666666
Q ss_pred CCceEEEEeeeCCh-hHHHH------------------------------------------------------------
Q 015093 212 GKIQVGVFSATMPP-EALEI------------------------------------------------------------ 230 (413)
Q Consensus 212 ~~~~~i~lSAT~~~-~~~~~------------------------------------------------------------ 230 (413)
.+.+ +.+|+||.- +..++
T Consensus 1128 a~hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1128 ANHR-LILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred hcce-EEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5554 559999841 11110
Q ss_pred -------------HHHhc---------------CC---CEEEEecCCccccCCc----------------eEEEEEeC--
Q 015093 231 -------------TRKFM---------------NK---PVRILVKRDELTLEGI----------------KQFHVNVD-- 261 (413)
Q Consensus 231 -------------~~~~~---------------~~---~~~~~~~~~~~~~~~~----------------~~~~~~~~-- 261 (413)
++.|+ .. ...-........ .+. .+-.....
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S-~gt~~~HvFqaLqYlrKLcnHpaLvlt~~ 1285 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEES-LGTDKTHVFQALQYLRKLCNHPALVLTPV 1285 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhc-cCcchHHHHHHHHHHHHhcCCcceeeCCC
Confidence 00000 00 000000000000 000 00000000
Q ss_pred ---------------------ccccHHHHHHHHHHhc----------------CCCcEEEEEcCcccHHHHHHHHhhCC-
Q 015093 262 ---------------------KEEWKLDTLCDLYETL----------------AITQSVIFVNTRRKVDWLTDQMRSRD- 303 (413)
Q Consensus 262 ---------------------~~~~~~~~l~~~~~~~----------------~~~~~lIf~~~~~~a~~l~~~l~~~~- 303 (413)
....|+.+|.+++... ...++||||+-+..++-+-+.|-+..
T Consensus 1286 hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~m 1365 (1549)
T KOG0392|consen 1286 HPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYM 1365 (1549)
T ss_pred cchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhc
Confidence 0123677777777544 22479999999999998887776543
Q ss_pred --CeeEeecCCCCHHHHHHHHHHHhcC-CCeEE-EEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcce-
Q 015093 304 --HTVSATHGDMDQNSRDIIMREFRSG-SSRVL-ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGV- 378 (413)
Q Consensus 304 --~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vl-i~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~- 378 (413)
+....+.|..++.+|.++.++|+++ .++|| .+|.+.+.|+|+.+++.||+++-.|++..=+|.+.|++|.|++..
T Consensus 1366 psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1366 PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceee
Confidence 3344789999999999999999998 67877 556799999999999999999999999999999999999998755
Q ss_pred -EEEEeccccHH-HHHHHHHH
Q 015093 379 -AINFVTRDDDR-MLADIQRF 397 (413)
Q Consensus 379 -~~~~~~~~~~~-~~~~~~~~ 397 (413)
++.+++.+..+ .+..+++|
T Consensus 1446 NVyRlItrGTLEEKVMgLQkF 1466 (1549)
T KOG0392|consen 1446 NVYRLITRGTLEEKVMGLQKF 1466 (1549)
T ss_pred eeeeehhcccHHHHHhhHHHH
Confidence 66677776554 45555555
No 132
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.87 E-value=2.9e-19 Score=178.01 Aligned_cols=313 Identities=17% Similarity=0.192 Sum_probs=192.8
Q ss_pred CCcHHHHhhhhh----hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHH-HHHHHHhhcccC
Q 015093 62 KPSAIQQRGIVP----FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQI-EKVMRALGDYMG 136 (413)
Q Consensus 62 ~~~~~Q~~~~~~----~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~-~~~~~~~~~~~~ 136 (413)
++|+-|.+.... +..++.+++.|+||+|||++|++|++... .+.+++|.|||++|++|. .+.+..+....+
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~~~ 320 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQRQIIVSVPTKILQDQIMAEEVKAIQEVFH 320 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHHHHHHhcC
Confidence 799999984444 44567799999999999999999988753 245899999999999999 467777766667
Q ss_pred ceEEEEECCcchHHH------------------------------------------------H----------------
Q 015093 137 VKVHACVGGTSVRED------------------------------------------------Q---------------- 152 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~------------------------------------------------~---------------- 152 (413)
+++..+.|+.++-.. .
T Consensus 321 ~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~cp~~~ 400 (820)
T PRK07246 321 IDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSSLFYD 400 (820)
T ss_pred CcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCCCcch
Confidence 666666654332100 0
Q ss_pred -------HHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC-----c-------HH------------
Q 015093 153 -------RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-----F-------KD------------ 201 (413)
Q Consensus 153 -------~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-----~-------~~------------ 201 (413)
+.....++|+|++...|...+..... +...+.+|+||||++.+.. . ..
T Consensus 401 ~cf~~~ar~~a~~AdivItNHall~~~~~~~~~-~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 479 (820)
T PRK07246 401 YDFWKRSYEKAKTARLLITNHAYFLTRVQDDKD-FARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALSGPLPL 479 (820)
T ss_pred hhHHHHHHHHHHhCCEEEEchHHHHHHHhhccC-CCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHHHHHHH
Confidence 00012468999999988877654432 4557999999999875311 0 00
Q ss_pred --------------------------------------HH-----------HHHHhhC----------------------
Q 015093 202 --------------------------------------QI-----------YDIFQHL---------------------- 210 (413)
Q Consensus 202 --------------------------------------~~-----------~~~~~~~---------------------- 210 (413)
.+ ..++..-
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~~l~~~ 559 (820)
T PRK07246 480 LQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVTYLNSA 559 (820)
T ss_pred HhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcceeEEEee
Confidence 00 0000000
Q ss_pred -----------CCCceEEEEeeeCC--hhHHHHHHHhcCCC-EEEEecCCccccCCceEEEEE--eCc-----cccHHHH
Q 015093 211 -----------PGKIQVGVFSATMP--PEALEITRKFMNKP-VRILVKRDELTLEGIKQFHVN--VDK-----EEWKLDT 269 (413)
Q Consensus 211 -----------~~~~~~i~lSAT~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~ 269 (413)
+....+|++|||++ +.. .+ ...++-. ....... .....-...+.. .+. .+.....
T Consensus 560 pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~-~~~lGl~~~~~~~~~--~~~~~~~~~~i~~~~p~~~~~~~~~~~~~ 635 (820)
T PRK07246 560 SKAFTHFSQLLPETCKTYFVSATLQISPRV-SL-ADLLGFEEYLFHKIE--KDKKQDQLVVVDQDMPLVTETSDEVYAEE 635 (820)
T ss_pred eCcHHHHHHHHhcCCeEEEEecccccCCCC-cH-HHHcCCCccceecCC--CChHHccEEEeCCCCCCCCCCChHHHHHH
Confidence 01136788999985 222 23 3233321 1111111 111111111111 111 1122222
Q ss_pred HHHHHHh--cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCC
Q 015093 270 LCDLYET--LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQ 347 (413)
Q Consensus 270 l~~~~~~--~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~ 347 (413)
+...+.. ..+++++|+++|.+..+.+++.|......+ ...|... .+.++++.|++++..||++|..+.+|+|+|.
T Consensus 636 ~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~ 712 (820)
T PRK07246 636 IAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQ 712 (820)
T ss_pred HHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCC
Confidence 2222211 356899999999999999999997654444 4444332 2466899999988899999999999999973
Q ss_pred --CCEEEEcCCCCC------------------------------hhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 348 --VSLVINYDLPTQ------------------------------PENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 348 --~~~vi~~~~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
...||+.+.|.. ...+.|.+||.-|...+.-+++++++.
T Consensus 713 ~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R 783 (820)
T PRK07246 713 ADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRR 783 (820)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCc
Confidence 556677776531 223689999999986654455555544
No 133
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.86 E-value=6.4e-21 Score=168.73 Aligned_cols=327 Identities=15% Similarity=0.194 Sum_probs=217.2
Q ss_pred CCCCcHHHHhhhhhh-hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCce
Q 015093 60 FEKPSAIQQRGIVPF-CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVK 138 (413)
Q Consensus 60 ~~~~~~~Q~~~~~~~-~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~ 138 (413)
+..|-|+|++.+... .+|+.+++...+|-|||..++. |...... ....||+||. .+...|.+.+.+|.....-
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla-IA~yyra---EwplliVcPA-svrftWa~al~r~lps~~p- 269 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALA-IARYYRA---EWPLLIVCPA-SVRFTWAKALNRFLPSIHP- 269 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH-HHHHHhh---cCcEEEEecH-HHhHHHHHHHHHhcccccc-
Confidence 346889999999774 5577899999999999998854 3333333 2378999996 5677799999999875433
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEE
Q 015093 139 VHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGV 218 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (413)
+.+..++.+.... ......|.|.+++.+...-.- +....+++||+||+|++-+. ..+....+........++|+
T Consensus 270 i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dllk~akhvIL 343 (689)
T KOG1000|consen 270 IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKDS-KTKRTKAATDLLKVAKHVIL 343 (689)
T ss_pred eEEEecccCCccc---cccCCeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhcc-chhhhhhhhhHHHHhhheEE
Confidence 3344443331111 112346889999987543221 12233689999999987543 23344444444445567999
Q ss_pred EeeeCC-------------------hhHHHHHHHhcCCC-EEEEecCC---------------------------ccccC
Q 015093 219 FSATMP-------------------PEALEITRKFMNKP-VRILVKRD---------------------------ELTLE 251 (413)
Q Consensus 219 lSAT~~-------------------~~~~~~~~~~~~~~-~~~~~~~~---------------------------~~~~~ 251 (413)
+|+||. ++..++..+|+... ..+..... .. ++
T Consensus 344 LSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qL-Pp 422 (689)
T KOG1000|consen 344 LSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQL-PP 422 (689)
T ss_pred ecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhC-Cc
Confidence 999984 23334444444321 11111000 00 11
Q ss_pred CceEEEEEeCc------------------------------------cccHHHHHHHHHHh------cCCCcEEEEEcCc
Q 015093 252 GIKQFHVNVDK------------------------------------EEWKLDTLCDLYET------LAITQSVIFVNTR 289 (413)
Q Consensus 252 ~~~~~~~~~~~------------------------------------~~~~~~~l~~~~~~------~~~~~~lIf~~~~ 289 (413)
.-+...+.... ...+...+.+.+.. .+..|.+||+...
T Consensus 423 Krr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~ 502 (689)
T KOG1000|consen 423 KRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQ 502 (689)
T ss_pred cceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhH
Confidence 11111111110 11234444444443 2456899999999
Q ss_pred ccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcC-CCeEE-EEeCccccCCCCCCCCEEEEcCCCCChhHHHhhh
Q 015093 290 RKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSG-SSRVL-ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRI 367 (413)
Q Consensus 290 ~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vl-i~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~ 367 (413)
.-.+.+...+.++++....+.|.++..+|....+.|+.. +..|- ++..+.+.|+++...+.||+...+|++.-++|.-
T Consensus 503 ~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAE 582 (689)
T KOG1000|consen 503 IVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAE 582 (689)
T ss_pred HHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEech
Confidence 999999999999999999999999999999999999854 44544 4557889999999999999999999999999999
Q ss_pred cccCCCCCcceEEEEecc----ccHHHHHHHHHHhc
Q 015093 368 GRSGRFGRKGVAINFVTR----DDDRMLADIQRFYN 399 (413)
Q Consensus 368 GR~~R~g~~g~~~~~~~~----~~~~~~~~~~~~~~ 399 (413)
.|++|.|+...+.+.|.- .|..+...+.+.|.
T Consensus 583 DRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~ 618 (689)
T KOG1000|consen 583 DRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLD 618 (689)
T ss_pred hhhhhccccceeeEEEEEecCchHHHHHHHHHHHHH
Confidence 999999987555444432 25556666665554
No 134
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.85 E-value=3.2e-19 Score=171.80 Aligned_cols=276 Identities=16% Similarity=0.180 Sum_probs=178.3
Q ss_pred CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|. .|++.|.-+.-.+.+ .-+..+.||.|||+++.+|++-.... +..+-|++++..|+.+-++.+..+...+|+
T Consensus 73 lG~-r~ydvQlig~l~L~~--G~IaEm~TGEGKTL~a~l~ayl~aL~---G~~VhVvT~NdyLA~RD~e~m~pvy~~LGL 146 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVLND--GKIAEMKTGEGKTLVATLPAYLNALT---GKGVHIVTVNDYLAKRDQEWMGQIYRFLGL 146 (870)
T ss_pred hCC-CCCchHhhhhHhhcC--CccccccCCCCchHHHHHHHHHHHhc---CCceEEEeCCHHHHHHHHHHHHHHHHHcCC
Confidence 344 688999887765544 46999999999999998887533222 448999999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHH-HHHHcC------CCCCCCccEEEEccchhhh-ccC-----------
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRVF-DMLRRQ------SLRPDYIRMFVLDEADEML-SRG----------- 198 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~-~~~~~~------~~~~~~~~~iIiDE~h~~~-~~~----------- 198 (413)
++++..++........ .-.++|+++|...|- +.++.. ......+.+.|+||+|.++ +..
T Consensus 147 svg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~~ 224 (870)
T CHL00122 147 TVGLIQEGMSSEERKK--NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSK 224 (870)
T ss_pred ceeeeCCCCChHHHHH--hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCCc
Confidence 9999988776544433 345799999997663 333221 1123457899999999643 210
Q ss_pred ----cHHHHHHHHhhCC-------------------------------------------------------CC------
Q 015093 199 ----FKDQIYDIFQHLP-------------------------------------------------------GK------ 213 (413)
Q Consensus 199 ----~~~~~~~~~~~~~-------------------------------------------------------~~------ 213 (413)
.......+.+.+. .+
T Consensus 225 ~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV~ 304 (870)
T CHL00122 225 TNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVR 304 (870)
T ss_pred cchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 0000000000000 00
Q ss_pred -------------------------------------------------------ceEEEEeeeCChhHHHHHHHhcCCC
Q 015093 214 -------------------------------------------------------IQVGVFSATMPPEALEITRKFMNKP 238 (413)
Q Consensus 214 -------------------------------------------------------~~~i~lSAT~~~~~~~~~~~~~~~~ 238 (413)
.++.|||+|......++.. .++-.
T Consensus 305 dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~-iY~l~ 383 (870)
T CHL00122 305 NNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEK-IYNLE 383 (870)
T ss_pred CCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHH-HhCCC
Confidence 3678899998765544444 44443
Q ss_pred EEEEecCCccccCCceEEEEEeCccccHHHHHHHH-HHhc-CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCH-
Q 015093 239 VRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDL-YETL-AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQ- 315 (413)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~-~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~- 315 (413)
+...+...+.......... ......+..++..- ...+ .+.|+||-+.|++..+.+++.|.+.|+++.++++....
T Consensus 384 vv~IPtnkp~~R~d~~d~v--~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~ 461 (870)
T CHL00122 384 VVCIPTHRPMLRKDLPDLI--YKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENV 461 (870)
T ss_pred EEECCCCCCccceeCCCeE--EeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccc
Confidence 3333222222222222121 22333455544443 3333 56799999999999999999999999999999987422
Q ss_pred HHHHHHHHHHhcC-CCeEEEEeCccccCCCCC
Q 015093 316 NSRDIIMREFRSG-SSRVLITTDLLARGIDVQ 346 (413)
Q Consensus 316 ~~r~~~~~~f~~~-~~~vli~t~~~~~G~d~~ 346 (413)
..-.+++.. .| ...|.|||+++++|.|+.
T Consensus 462 ~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 462 RRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred hhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 222334432 34 345889999999999974
No 135
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=7.4e-20 Score=164.72 Aligned_cols=331 Identities=13% Similarity=0.057 Sum_probs=225.5
Q ss_pred HHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH
Q 015093 51 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 51 ~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
+.+.++.+.....+.+|.++++.+..|++.++.-.|.+||++++.......+.... ....+++.|+.++++...+.+.-
T Consensus 275 ~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~V 353 (1034)
T KOG4150|consen 275 IRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH-ATNSLLPSEMVEHLRNGSKGQVV 353 (1034)
T ss_pred HHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc-ccceecchhHHHHhhccCCceEE
Confidence 34556667777899999999999999999999999999999999877766554443 33789999999987654433211
Q ss_pred hh---cccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCC----CCccEEEEccchhhhccCcHH--
Q 015093 131 LG---DYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP----DYIRMFVLDEADEMLSRGFKD-- 201 (413)
Q Consensus 131 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~----~~~~~iIiDE~h~~~~~~~~~-- 201 (413)
.. ....-.+.-.+.+............+.+++++.+++.......+.... -...++++||+|..... +..
T Consensus 354 ~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~~~ 432 (1034)
T KOG4150|consen 354 HVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKALA 432 (1034)
T ss_pred EEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhhHH
Confidence 10 111122333334444444445555678999999998876654433322 22467999999964322 232
Q ss_pred --HHHHHHhhC-----CCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCc--------cccH
Q 015093 202 --QIYDIFQHL-----PGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDK--------EEWK 266 (413)
Q Consensus 202 --~~~~~~~~~-----~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 266 (413)
.+.++.+.+ ..+.+++-.+||.............-.......... .+.+.+++..+-+. .+.+
T Consensus 433 ~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DG--SPs~~K~~V~WNP~~~P~~~~~~~~~ 510 (1034)
T KOG4150|consen 433 QDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDG--SPSSEKLFVLWNPSAPPTSKSEKSSK 510 (1034)
T ss_pred HHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecC--CCCccceEEEeCCCCCCcchhhhhhH
Confidence 222332222 236788888899876655444444334433333322 23344444444332 1233
Q ss_pred HHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhh----CCC----eeEeecCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 015093 267 LDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRS----RDH----TVSATHGDMDQNSRDIIMREFRSGSSRVLITT 336 (413)
Q Consensus 267 ~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~----~~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t 336 (413)
+.....++.+. .+-+++.||++++.|+.+.....+ .+. .+..|.|+....+|.++..+.-.|++.-+|+|
T Consensus 511 i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaT 590 (1034)
T KOG4150|consen 511 VVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIAT 590 (1034)
T ss_pred HHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEec
Confidence 44444444433 345899999999988876544432 221 35578899999999999999999999999999
Q ss_pred CccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEecc
Q 015093 337 DLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTR 385 (413)
Q Consensus 337 ~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 385 (413)
++++.|+|+..++.|++.+.|.|...+.|..||+||.+++..++.+...
T Consensus 591 NALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~ 639 (1034)
T KOG4150|consen 591 NALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFL 639 (1034)
T ss_pred chhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEec
Confidence 9999999999999999999999999999999999999998887766654
No 136
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.83 E-value=3.2e-19 Score=166.30 Aligned_cols=321 Identities=17% Similarity=0.199 Sum_probs=214.7
Q ss_pred CCcHHHHhhhhhhh----CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 62 KPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~----~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
+|.+||.-.++.+. .+-+.|+...+|-|||...+ +.+..|...+..+.=|||||+..|-+ |.+++.+|++ .+
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvI-aFlayLkq~g~~gpHLVVvPsSTleN-WlrEf~kwCP--sl 474 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVI-AFLAYLKQIGNPGPHLVVVPSSTLEN-WLREFAKWCP--SL 474 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHH-HHHHHHHHcCCCCCcEEEecchhHHH-HHHHHHHhCC--ce
Confidence 58899999998753 24458999999999997764 44444444443447799999988665 8899999998 56
Q ss_pred eEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCC-CCCCCccEEEEccchhhhccCcHHHHHHHHhhCCC
Q 015093 138 KVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQS-LRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPG 212 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~ 212 (413)
++...+|........+-. ..+.+|+++||+.....-.... +...++.++|+||+|.+-+.. ...+..+ -.++
T Consensus 475 ~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~L-M~I~- 551 (941)
T KOG0389|consen 475 KVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHL-MSIN- 551 (941)
T ss_pred EEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHh-cccc-
Confidence 787888876543332221 2368999999987753322222 223457899999999886554 2222222 2233
Q ss_pred CceEEEEeeeCC-hhHHHHH---------------------------------------------HHhcCC---------
Q 015093 213 KIQVGVFSATMP-PEALEIT---------------------------------------------RKFMNK--------- 237 (413)
Q Consensus 213 ~~~~i~lSAT~~-~~~~~~~---------------------------------------------~~~~~~--------- 237 (413)
....+++|+||- +++.+++ +..+..
T Consensus 552 An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~q 631 (941)
T KOG0389|consen 552 ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLKSQ 631 (941)
T ss_pred ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344677999983 1111110 000000
Q ss_pred -----C-----EE-EEec---------------------CCccccCC----------------ceEEE------------
Q 015093 238 -----P-----VR-ILVK---------------------RDELTLEG----------------IKQFH------------ 257 (413)
Q Consensus 238 -----~-----~~-~~~~---------------------~~~~~~~~----------------~~~~~------------ 257 (413)
| +. +... .......+ .+.++
T Consensus 632 VL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~i 711 (941)
T KOG0389|consen 632 VLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRI 711 (941)
T ss_pred HHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHHHH
Confidence 0 00 0000 00000000 00000
Q ss_pred --------------------------------------EEeCc----cccHHHHHHHHHHhc--CCCcEEEEEcCcccHH
Q 015093 258 --------------------------------------VNVDK----EEWKLDTLCDLYETL--AITQSVIFVNTRRKVD 293 (413)
Q Consensus 258 --------------------------------------~~~~~----~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~ 293 (413)
..+.. ...+...|..++... .+.++|||..-.....
T Consensus 712 l~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLD 791 (941)
T KOG0389|consen 712 LNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLD 791 (941)
T ss_pred hCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHH
Confidence 00000 123666777777654 4469999999988888
Q ss_pred HHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCC-C-eEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccC
Q 015093 294 WLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGS-S-RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSG 371 (413)
Q Consensus 294 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~-~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~ 371 (413)
-+--.|.-.++....+.|.+.-.+|+.+++.|..++ + -+|++|.+.+.|||+.++++||+++...++-.=.|+-.||+
T Consensus 792 ILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcH 871 (941)
T KOG0389|consen 792 ILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCH 871 (941)
T ss_pred HHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHH
Confidence 888888899999999999999999999999998765 3 36688999999999999999999999999999999999999
Q ss_pred CCCC--cceEEEEeccccHH
Q 015093 372 RFGR--KGVAINFVTRDDDR 389 (413)
Q Consensus 372 R~g~--~g~~~~~~~~~~~~ 389 (413)
|.|+ +-.++.+++....+
T Consensus 872 RvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 872 RVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred hhCCcceeEEEEEEecCcHH
Confidence 9996 46677788877654
No 137
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.83 E-value=1.5e-17 Score=158.64 Aligned_cols=116 Identities=13% Similarity=0.101 Sum_probs=81.8
Q ss_pred HHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhc----CCCeEEEEeCccccCC
Q 015093 268 DTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRS----GSSRVLITTDLLARGI 343 (413)
Q Consensus 268 ~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----~~~~vli~t~~~~~G~ 343 (413)
..+..++.. ..|+++|.+.|...++.+++.|...--....+.|..+ .+..+++.|+. |...||++|..+.+||
T Consensus 460 ~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGv 536 (636)
T TIGR03117 460 LSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGI 536 (636)
T ss_pred HHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccccc
Confidence 333444443 4578999999999999999999764223345555432 35667888887 4688999999999999
Q ss_pred CC--------C--CCCEEEEcCCCCC-------------------------hhHHHhhhcccCCCCCc--ceEEEEeccc
Q 015093 344 DV--------Q--QVSLVINYDLPTQ-------------------------PENYLHRIGRSGRFGRK--GVAINFVTRD 386 (413)
Q Consensus 344 d~--------~--~~~~vi~~~~~~s-------------------------~~~~~Q~~GR~~R~g~~--g~~~~~~~~~ 386 (413)
|+ | .+.+||+...|+. ...+.|.+||.-|...+ .-.+.++++.
T Consensus 537 Dv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 537 DLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred ccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 99 3 3888998777642 22368999999998765 3444444443
No 138
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=4.4e-18 Score=163.74 Aligned_cols=273 Identities=15% Similarity=0.153 Sum_probs=178.2
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.|++.|.-+--.+..|+ |..+.||.|||+++.+|++-.... +..+-||+++.-||..-++++..+...+|+++++
T Consensus 85 r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~---GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~ 159 (939)
T PRK12902 85 RHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALT---GKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGL 159 (939)
T ss_pred CcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhc---CCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEE
Confidence 78888988777775554 999999999999998887654443 3479999999999999999999999999999999
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHH-----HHHHHc--CCCCCCCccEEEEccchhhh-ccC---------------
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRV-----FDMLRR--QSLRPDYIRMFVLDEADEML-SRG--------------- 198 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l-----~~~~~~--~~~~~~~~~~iIiDE~h~~~-~~~--------------- 198 (413)
..++...... ...-.++|+++|...| .+.+.. .......+.+.|+||+|.++ +..
T Consensus 160 i~~~~~~~er--r~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~~~~~~~ 237 (939)
T PRK12902 160 IQQDMSPEER--KKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQVERPQE 237 (939)
T ss_pred ECCCCChHHH--HHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCCCccchH
Confidence 8877654433 3345789999999887 333322 12234557899999999643 111
Q ss_pred cHHHHHHHHhhCCC--------------C---------------------------------------------------
Q 015093 199 FKDQIYDIFQHLPG--------------K--------------------------------------------------- 213 (413)
Q Consensus 199 ~~~~~~~~~~~~~~--------------~--------------------------------------------------- 213 (413)
.......+...+.. .
T Consensus 238 ~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~d~dYi 317 (939)
T PRK12902 238 KYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIKDVNYI 317 (939)
T ss_pred HHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhcCCeEE
Confidence 00000011100000 0
Q ss_pred ---------------------------------------------------------ceEEEEeeeCChhHHHHHHHhcC
Q 015093 214 ---------------------------------------------------------IQVGVFSATMPPEALEITRKFMN 236 (413)
Q Consensus 214 ---------------------------------------------------------~~~i~lSAT~~~~~~~~~~~~~~ 236 (413)
.++.+||+|......++...|..
T Consensus 318 V~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l 397 (939)
T PRK12902 318 VRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKL 397 (939)
T ss_pred EECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCC
Confidence 36777888876555444444433
Q ss_pred CCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHH-hc-CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCC-C
Q 015093 237 KPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYE-TL-AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGD-M 313 (413)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~-~ 313 (413)
..+.+........ ....... +.....+..++.+-+. .+ .+.|+||-+.|++..+.+++.|.+.|+++.+++.. .
T Consensus 398 ~Vv~IPTnkP~~R-~d~~d~v--y~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~ 474 (939)
T PRK12902 398 EVTVIPTNRPRRR-QDWPDQV--YKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPE 474 (939)
T ss_pred cEEEcCCCCCeee-ecCCCeE--EcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCc
Confidence 3333322222211 1111111 2233455555554443 33 56799999999999999999999999999999987 2
Q ss_pred CHHHHHHHHHHHhcCC-CeEEEEeCccccCCCCC
Q 015093 314 DQNSRDIIMREFRSGS-SRVLITTDLLARGIDVQ 346 (413)
Q Consensus 314 ~~~~r~~~~~~f~~~~-~~vli~t~~~~~G~d~~ 346 (413)
....-.+++. ..|. ..|.|||+++++|.|+.
T Consensus 475 ~~~~EA~IIa--~AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 475 NVEREAEIVA--QAGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred chHhHHHHHH--hcCCCCcEEEeccCCCCCcCEe
Confidence 3222233433 2444 45889999999998874
No 139
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=7.6e-20 Score=174.40 Aligned_cols=321 Identities=17% Similarity=0.190 Sum_probs=221.6
Q ss_pred CCCcHHHHhhhhhhhC--C--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 61 EKPSAIQQRGIVPFCK--G--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~--~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
.++.+||...++.+.+ + -+.|+...+|-|||...+..+...+..++..+..+|+||+..|.+ |..++..|+. .
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaP--S 469 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAP--S 469 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhcccccc--c
Confidence 4899999999998876 2 348999999999999998888887777777778999999999887 7778888876 4
Q ss_pred ceEEEEECCcchHH--HHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCc
Q 015093 137 VKVHACVGGTSVRE--DQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKI 214 (413)
Q Consensus 137 ~~~~~~~~~~~~~~--~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~ 214 (413)
+......|...... ..++.....+|+++|++.+.. ....+..-.+.++||||.|++.+ ....+...+.......
T Consensus 470 v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKN--a~~KLt~~L~t~y~~q 545 (1157)
T KOG0386|consen 470 VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKN--AICKLTDTLNTHYRAQ 545 (1157)
T ss_pred eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccc--hhhHHHHHhhccccch
Confidence 44445555443221 223345688999999998764 11111122367999999999844 3444555555333344
Q ss_pred eEEEEeeeCChh-HHH-----------------HHHHhcCCCEEEEe---------------------------------
Q 015093 215 QVGVFSATMPPE-ALE-----------------ITRKFMNKPVRILV--------------------------------- 243 (413)
Q Consensus 215 ~~i~lSAT~~~~-~~~-----------------~~~~~~~~~~~~~~--------------------------------- 243 (413)
..+++|+||.-+ +.+ .+..++..|..-..
T Consensus 546 ~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeV 625 (1157)
T KOG0386|consen 546 RRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEV 625 (1157)
T ss_pred hhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHH
Confidence 567788888410 000 00011110000000
Q ss_pred ------------c---------------------------CCc------------------cccCCc----eEEE--EEe
Q 015093 244 ------------K---------------------------RDE------------------LTLEGI----KQFH--VNV 260 (413)
Q Consensus 244 ------------~---------------------------~~~------------------~~~~~~----~~~~--~~~ 260 (413)
. ... +...++ ...+ ..+
T Consensus 626 E~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL 705 (1157)
T KOG0386|consen 626 EQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDL 705 (1157)
T ss_pred hhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhHH
Confidence 0 000 000000 0000 000
Q ss_pred CccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCC---eEEEE
Q 015093 261 DKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSS---RVLIT 335 (413)
Q Consensus 261 ~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~ 335 (413)
-....+...+..++.+. .++++|.|+.-......+-.+|.-.++....+.|.+...+|...++.|..... .+|.+
T Consensus 706 ~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Flls 785 (1157)
T KOG0386|consen 706 VRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLS 785 (1157)
T ss_pred HHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeee
Confidence 11234566666666544 56899999999999999999999999999999999999999999999987543 47788
Q ss_pred eCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccH
Q 015093 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388 (413)
Q Consensus 336 t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 388 (413)
|.+.+.|+|+..++.||+++..|++....|+-.|+.|.|+...+.++......
T Consensus 786 tragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~ 838 (1157)
T KOG0386|consen 786 TRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVN 838 (1157)
T ss_pred ecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhh
Confidence 99999999999999999999999999999999999999987776666655433
No 140
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.81 E-value=4.4e-17 Score=165.44 Aligned_cols=109 Identities=14% Similarity=0.198 Sum_probs=81.0
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhCCC--eeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCC--CCEEEE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSRDH--TVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQ--VSLVIN 353 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~--~~~vi~ 353 (413)
.++++||+++|.+..+.+++.|..... ....+.-+++...|.++++.|++++..||++|..+.+|+|+|+ +++||+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 557999999999999999999975422 1222222333345788999999988889999999999999996 588888
Q ss_pred cCCCCC------------------------------hhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 354 YDLPTQ------------------------------PENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 354 ~~~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
.+.|+. ...+.|.+||.-|...+.-++++++..
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 887641 123589999999987654455555543
No 141
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.80 E-value=3.3e-18 Score=136.22 Aligned_cols=144 Identities=41% Similarity=0.570 Sum_probs=111.9
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSA 157 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
+++++.+|||+|||.+++..+....... ...+++|++|+..++.|+.+.+...... +..+....+.............
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~-~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL-KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc-cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcC
Confidence 3589999999999999988888766553 3459999999999999999999887765 6777777777665554444456
Q ss_pred CCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 158 GVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 158 ~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
..+|+++|++.+.............++++|+||+|.+....................+++++||||
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 789999999999988877655556689999999999876654443323344456678899999997
No 142
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.80 E-value=1.3e-18 Score=136.53 Aligned_cols=118 Identities=43% Similarity=0.720 Sum_probs=109.5
Q ss_pred cHHHHHHHHHHhcC--CCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccC
Q 015093 265 WKLDTLCDLYETLA--ITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARG 342 (413)
Q Consensus 265 ~~~~~l~~~~~~~~--~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 342 (413)
.+...+..++.... ++++||||++.+.++.+++.|.+.+..+..+||+++..+|..+++.|.++...++++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 57777777777663 7899999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEE
Q 015093 343 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINF 382 (413)
Q Consensus 343 ~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 382 (413)
+|+|.++++|+++++++...+.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998888764
No 143
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.79 E-value=3.3e-18 Score=153.89 Aligned_cols=281 Identities=17% Similarity=0.213 Sum_probs=185.3
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCC
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGV 159 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (413)
++-+|||.||||.-+ ++++...+ ..++.-|.+-|+.+.++.++.. |+...+++|......... ...+
T Consensus 194 i~H~GPTNSGKTy~A----Lqrl~~ak---sGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~--~~~a 260 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRA----LQRLKSAK---SGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN--GNPA 260 (700)
T ss_pred EEEeCCCCCchhHHH----HHHHhhhc---cceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC--CCcc
Confidence 566899999999765 45554444 6799999999999999888876 677777777654322211 1235
Q ss_pred cEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCC-CCceEEEEeeeCChhHHHHHHHhcCCC
Q 015093 160 HVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLP-GKIQVGVFSATMPPEALEITRKFMNKP 238 (413)
Q Consensus 160 ~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~lSAT~~~~~~~~~~~~~~~~ 238 (413)
+.+-+|.++.- ....+++.|+||++.+.+..++-+|.+.+--+. ...+ +-+-| ...++.+..+...
T Consensus 261 ~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiH---LCGep--svldlV~~i~k~T 327 (700)
T KOG0953|consen 261 QHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIH---LCGEP--SVLDLVRKILKMT 327 (700)
T ss_pred cceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhh---ccCCc--hHHHHHHHHHhhc
Confidence 67777766542 123378999999999988877766665443332 2222 22233 2334444443322
Q ss_pred EEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCe-eEeecCCCCHHH
Q 015093 239 VRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHT-VSATHGDMDQNS 317 (413)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~-~~~~~~~~~~~~ 317 (413)
..... .+.+..... -...+.+..-++....|.++| |-|++....+...+.+.+.. +.+++|.+++..
T Consensus 328 Gd~ve----------v~~YeRl~p-L~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeT 395 (700)
T KOG0953|consen 328 GDDVE----------VREYERLSP-LVVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPET 395 (700)
T ss_pred CCeeE----------EEeecccCc-ceehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcCcceEEEecCCCCch
Confidence 11000 011111111 111123344455556666655 55678889999999888765 999999999999
Q ss_pred HHHHHHHHhc--CCCeEEEEeCccccCCCCCCCCEEEEcCC---------CCChhHHHhhhcccCCCCC---cceEEEEe
Q 015093 318 RDIIMREFRS--GSSRVLITTDLLARGIDVQQVSLVINYDL---------PTQPENYLHRIGRSGRFGR---KGVAINFV 383 (413)
Q Consensus 318 r~~~~~~f~~--~~~~vli~t~~~~~G~d~~~~~~vi~~~~---------~~s~~~~~Q~~GR~~R~g~---~g~~~~~~ 383 (413)
|.+-...|++ ++.+|||||+++++|+|+ +++-||+++. +.+..+..|..||+||.|. .|.+.++.
T Consensus 396 r~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~ 474 (700)
T KOG0953|consen 396 RLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLH 474 (700)
T ss_pred hHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEee
Confidence 9999999987 889999999999999999 7888887765 3578899999999999863 36666655
Q ss_pred ccccHHHHHHHHHHhccccc
Q 015093 384 TRDDDRMLADIQRFYNVVIE 403 (413)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~ 403 (413)
. +.+..+.+-++...+
T Consensus 475 ~----eDL~~L~~~l~~p~e 490 (700)
T KOG0953|consen 475 S----EDLKLLKRILKRPVE 490 (700)
T ss_pred H----hhHHHHHHHHhCCch
Confidence 4 445555555554333
No 144
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.79 E-value=7.9e-19 Score=146.36 Aligned_cols=152 Identities=18% Similarity=0.154 Sum_probs=102.1
Q ss_pred CCcHHHHhhhhhhhC-------CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcc
Q 015093 62 KPSAIQQRGIVPFCK-------GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~-------~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~ 134 (413)
+|+++|.+++..+.. .+++++.+|||||||.+++..+..... +++|++|+..|++|+.+.+..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 589999999999874 578999999999999998765655533 8999999999999999999766543
Q ss_pred cCceEEE-----------EECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCC-----------CCCCCccEEEEccch
Q 015093 135 MGVKVHA-----------CVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQS-----------LRPDYIRMFVLDEAD 192 (413)
Q Consensus 135 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~-----------~~~~~~~~iIiDE~h 192 (413)
....... ..................+++++|++.+........ ......++||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 2111000 001111111222234467899999999987765421 122346899999999
Q ss_pred hhhccCcHHHHHHHHhhCCCCceEEEEeeeCC
Q 015093 193 EMLSRGFKDQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
++..... +..+.. .+...+++|||||.
T Consensus 157 ~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp CTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred hcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 9754431 344444 45677999999995
No 145
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=8.2e-17 Score=156.74 Aligned_cols=124 Identities=19% Similarity=0.283 Sum_probs=98.8
Q ss_pred ccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcC-CCeEEEEeCccc
Q 015093 264 EWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSG-SSRVLITTDLLA 340 (413)
Q Consensus 264 ~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vli~t~~~~ 340 (413)
..+..++..-+... .+.|+||-+.|++..+.+++.|+..|+++.++++.....|.+.+-+ .| ...|.|||+|++
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~---AG~~GaVTIATNMAG 687 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE---AGQPGTVTIATNMAG 687 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh---cCCCCcEEEeccCcC
Confidence 44566555554433 6679999999999999999999999999999988866444433333 33 345889999999
Q ss_pred cCCCCC--------CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 341 RGIDVQ--------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 341 ~G~d~~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
+|.|+. +=-+||-...+.|...-.|..||+||.|.+|.+.+|++-.|.-+
T Consensus 688 RGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLm 745 (1112)
T PRK12901 688 RGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLM 745 (1112)
T ss_pred CCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHH
Confidence 999986 34567778889999999999999999999999999999877544
No 146
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.75 E-value=4.1e-16 Score=154.89 Aligned_cols=132 Identities=14% Similarity=0.219 Sum_probs=89.4
Q ss_pred HHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCe-eEeecCCCCHHHHHHHHHHHhcCCC-eEEEEeCccccCCCCCC
Q 015093 270 LCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHT-VSATHGDMDQNSRDIIMREFRSGSS-RVLITTDLLARGIDVQQ 347 (413)
Q Consensus 270 l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~~-~vli~t~~~~~G~d~~~ 347 (413)
+..+++. .++++|||++|.+.++.+++.+...... ....++..+ +.+.++.|+.+.- .+++++..+.+|+|+|+
T Consensus 471 i~~~~~~-~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g 546 (654)
T COG1199 471 LREILKA-SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPG 546 (654)
T ss_pred HHHHHhh-cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCC
Confidence 3333344 3458999999999999999999876552 344454444 4477788876544 89999999999999996
Q ss_pred --CCEEEEcCCCC------------------------------ChhHHHhhhcccCCCCCcceEEEEeccc--cHHHHHH
Q 015093 348 --VSLVINYDLPT------------------------------QPENYLHRIGRSGRFGRKGVAINFVTRD--DDRMLAD 393 (413)
Q Consensus 348 --~~~vi~~~~~~------------------------------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~--~~~~~~~ 393 (413)
++.||+++.|. ....+.|.+||+.|...+.-++++++.. ....-+.
T Consensus 547 ~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~ 626 (654)
T COG1199 547 DALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKL 626 (654)
T ss_pred CCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHH
Confidence 67888888764 2344689999999975554444444433 2223445
Q ss_pred HHHHhccccccC
Q 015093 394 IQRFYNVVIEEL 405 (413)
Q Consensus 394 ~~~~~~~~~~~~ 405 (413)
+-+.+.......
T Consensus 627 l~~~l~~~~~~~ 638 (654)
T COG1199 627 LLDSLPPFPKSK 638 (654)
T ss_pred HHHhCCCCcccc
Confidence 555555444433
No 147
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.75 E-value=4.2e-18 Score=120.00 Aligned_cols=78 Identities=47% Similarity=0.818 Sum_probs=75.3
Q ss_pred HHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCC
Q 015093 297 DQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG 374 (413)
Q Consensus 297 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 374 (413)
+.|++.++.+..+||+++..+|.++++.|++++..|||+|+++++|+|+|.+++||++++|+|...|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999976
No 148
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.74 E-value=3e-16 Score=153.57 Aligned_cols=322 Identities=16% Similarity=0.121 Sum_probs=187.7
Q ss_pred CCCcHHHHhhhhhhhC----C----CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhh
Q 015093 61 EKPSAIQQRGIVPFCK----G----LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~----~----~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~ 132 (413)
..-..+|-+|++.+.. . =-++..|.||+|||++= .-|+..+.....+.+..|..-.+.|.-|+-+.+++-.
T Consensus 407 ~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aN-ARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL 485 (1110)
T TIGR02562 407 HPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLAN-ARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRL 485 (1110)
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHH-HHHHHHhCCCCCCceEEEEccccceeccchHHHHHhc
Confidence 3566799999988765 1 12677999999999875 4455556666667788888888999888888887654
Q ss_pred cccCceEEEEECCcchHHHH-------------------------------------------HHHh--------cCCcE
Q 015093 133 DYMGVKVHACVGGTSVREDQ-------------------------------------------RILS--------AGVHV 161 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~--------~~~~I 161 (413)
...+....++.|+.....-. ..+. -..++
T Consensus 486 ~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv 565 (1110)
T TIGR02562 486 NLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPV 565 (1110)
T ss_pred CCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCe
Confidence 43344444444432211000 0000 12479
Q ss_pred EEeChHHHHHHHHcCC--------CCCCCccEEEEccchhhhccCcHHHHHHHHhhCC-CCceEEEEeeeCChhHHHHHH
Q 015093 162 VVGTPGRVFDMLRRQS--------LRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLP-GKIQVGVFSATMPPEALEITR 232 (413)
Q Consensus 162 ii~T~~~l~~~~~~~~--------~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~lSAT~~~~~~~~~~ 232 (413)
+|+|++.++....... +.+. -+.||+||+|-+ +..-...+.+++.... -+.++++||||+++.....+.
T Consensus 566 ~V~TIDQlL~a~~~~r~~~~~l~ll~La-~svlVlDEVHaY-D~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~ 643 (1110)
T TIGR02562 566 LVCTIDHLIPATESHRGGHHIAPMLRLM-SSDLILDEPDDY-EPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTLF 643 (1110)
T ss_pred EEecHHHHHHHhhhcccchhHHHHHHhc-CCCEEEECCccC-CHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 9999999987663211 1122 268999999964 3322333444444221 257799999999976654332
Q ss_pred -----------HhcCCC---EEEEec---CCccc--------------------------cCCceE--EEEEeCccc---
Q 015093 233 -----------KFMNKP---VRILVK---RDELT--------------------------LEGIKQ--FHVNVDKEE--- 264 (413)
Q Consensus 233 -----------~~~~~~---~~~~~~---~~~~~--------------------------~~~~~~--~~~~~~~~~--- 264 (413)
...+.+ ..+-.. ..... ...... ....++...
T Consensus 644 ~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~ 723 (1110)
T TIGR02562 644 RAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPREN 723 (1110)
T ss_pred HHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccch
Confidence 222221 111110 00000 000111 111111111
Q ss_pred -cHHHH--------HHHHHHhc----C-CC-c---EEEEEcCcccHHHHHHHHhhC------CCeeEeecCCCCHHHHHH
Q 015093 265 -WKLDT--------LCDLYETL----A-IT-Q---SVIFVNTRRKVDWLTDQMRSR------DHTVSATHGDMDQNSRDI 320 (413)
Q Consensus 265 -~~~~~--------l~~~~~~~----~-~~-~---~lIf~~~~~~a~~l~~~l~~~------~~~~~~~~~~~~~~~r~~ 320 (413)
..... +..+...+ + .+ + .+|-+++++.+-.+++.|-+. .+.+.+||+......|..
T Consensus 724 ~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~ 803 (1110)
T TIGR02562 724 ESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSY 803 (1110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHH
Confidence 11111 11222222 1 12 2 488888888888888887654 245778999987777776
Q ss_pred HHHHH----------------------hc----CCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCC
Q 015093 321 IMREF----------------------RS----GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG 374 (413)
Q Consensus 321 ~~~~f----------------------~~----~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 374 (413)
+++.+ .+ +...|+|+|++.+.|+|+ +.+.+| .-+.+..+++|++||+.|.+
T Consensus 804 ~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 804 IERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNRHR 880 (1110)
T ss_pred HHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhcccccc
Confidence 65543 11 356799999999999999 556554 34567899999999999987
Q ss_pred Cc--ceEEEEeccccH
Q 015093 375 RK--GVAINFVTRDDD 388 (413)
Q Consensus 375 ~~--g~~~~~~~~~~~ 388 (413)
.. +..-+++...+.
T Consensus 881 ~~~~~~~N~~i~~~N~ 896 (1110)
T TIGR02562 881 LEKVQQPNIVILQWNY 896 (1110)
T ss_pred cCCCCCCcEEEeHhHH
Confidence 52 333344444333
No 149
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.74 E-value=6.9e-16 Score=137.20 Aligned_cols=118 Identities=16% Similarity=0.255 Sum_probs=97.4
Q ss_pred CcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcC-CCeEE-EEeCccccCCCCCCCCEEEEcCCC
Q 015093 280 TQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSG-SSRVL-ITTDLLARGIDVQQVSLVINYDLP 357 (413)
Q Consensus 280 ~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vl-i~t~~~~~G~d~~~~~~vi~~~~~ 357 (413)
-|.+||.+-....+.+.=.|.+.|+.++-+.|+|++..|...++.|.++ .++|+ ++-.+.+..+|+....+|+++++=
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 4678888887777778778888999999999999999999999999875 45555 555788888999999999999999
Q ss_pred CChhHHHhhhcccCCCCC--cceEEEEeccccHH-HHHHHHHH
Q 015093 358 TQPENYLHRIGRSGRFGR--KGVAINFVTRDDDR-MLADIQRF 397 (413)
Q Consensus 358 ~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~~~~-~~~~~~~~ 397 (413)
|++.--+|...|+.|.|+ +-+++.|+-+...+ .+-.+++.
T Consensus 719 WNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeK 761 (791)
T KOG1002|consen 719 WNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEK 761 (791)
T ss_pred ccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHH
Confidence 999999999999999986 56777787776554 33344443
No 150
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.73 E-value=6.7e-16 Score=150.74 Aligned_cols=310 Identities=16% Similarity=0.212 Sum_probs=208.0
Q ss_pred CcHHHHhhhhhhhC-CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHH-HHhhcccCceEE
Q 015093 63 PSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVM-RALGDYMGVKVH 140 (413)
Q Consensus 63 ~~~~Q~~~~~~~~~-~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~-~~~~~~~~~~~~ 140 (413)
..++|..+++.+-+ +++++|.+|+|||||.++-++++. .....+++++.|..+.+..+++.+ +++....|..+.
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~ 1219 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIV 1219 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccccCceEE
Confidence 37889999988765 456999999999999998776655 333559999999999988877777 556666788888
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC------cHHHHHHHHhhCCCCc
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG------FKDQIYDIFQHLPGKI 214 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~------~~~~~~~~~~~~~~~~ 214 (413)
.++|....... +....+|+|+||+++... . ..+.+++.|.||.|.+.+.. ... +..+..++.+..
T Consensus 1220 ~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~i 1290 (1674)
T KOG0951|consen 1220 KLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKI 1290 (1674)
T ss_pred ecCCccccchH---HhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhhe
Confidence 88887764332 234469999999999755 2 44568999999999876321 112 566677777889
Q ss_pred eEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCc--ccc-----HHHHHHHHHHh-cCCCcEEEEE
Q 015093 215 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDK--EEW-----KLDTLCDLYET-LAITQSVIFV 286 (413)
Q Consensus 215 ~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~l~~~~~~-~~~~~~lIf~ 286 (413)
+++++|....+. .+. .++.....+.. ....++.........++. ... .-..+..+... ..+++.+||+
T Consensus 1291 r~v~ls~~lana-~d~--ig~s~~~v~Nf-~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~ 1366 (1674)
T KOG0951|consen 1291 RVVALSSSLANA-RDL--IGASSSGVFNF-SPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFL 1366 (1674)
T ss_pred eEEEeehhhccc-hhh--ccccccceeec-CcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEe
Confidence 999999887543 333 12212111222 222222222222222221 111 11112222221 1456899999
Q ss_pred cCcccHHHHHHHHhh----------------------CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCC
Q 015093 287 NTRRKVDWLTDQMRS----------------------RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGID 344 (413)
Q Consensus 287 ~~~~~a~~l~~~l~~----------------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d 344 (413)
|++++|..++..|-. ....+.+=|.+++..+....-..|..|.+.|+|...- ..|+-
T Consensus 1367 p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~ 1445 (1674)
T KOG0951|consen 1367 PTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTK 1445 (1674)
T ss_pred ccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-ccccc
Confidence 999999887765521 0123333388899999999999999999999998876 88877
Q ss_pred CCCCCEEEEcC-----------CCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHH
Q 015093 345 VQQVSLVINYD-----------LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 345 ~~~~~~vi~~~-----------~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 394 (413)
... +.||.++ .+.+.....|+.|++.| .|+|++++..+..+.++.+
T Consensus 1446 ~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1446 LKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred ccc-eEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHh
Confidence 743 3343322 24567889999999999 5789999988887765543
No 151
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=4e-15 Score=147.90 Aligned_cols=74 Identities=24% Similarity=0.248 Sum_probs=61.0
Q ss_pred CCCCCCcHHHHhhhhh----hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 58 YGFEKPSAIQQRGIVP----FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~----~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
+.|..+||.|.+.... +..++++++.+|||+|||++.+.+++..........++++.+.|.+-..|..+++++.
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 4566779999877655 4557889999999999999999988886654444468999999999999999999884
No 152
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.72 E-value=2.2e-16 Score=145.75 Aligned_cols=123 Identities=19% Similarity=0.285 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhc--CCCeEE-EEeCcc
Q 015093 266 KLDTLCDLYETL---AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRS--GSSRVL-ITTDLL 339 (413)
Q Consensus 266 ~~~~l~~~~~~~---~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vl-i~t~~~ 339 (413)
+...+..+++.. ...+++|...=......+..++++.|.....++|.....+|+.+++.|.. |..+|+ ++-.+.
T Consensus 730 Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAG 809 (901)
T KOG4439|consen 730 KIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAG 809 (901)
T ss_pred HHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccC
Confidence 444444444333 45677777766666778889999999999999999999999999999975 434555 445788
Q ss_pred ccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEE--EeccccH
Q 015093 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAIN--FVTRDDD 388 (413)
Q Consensus 340 ~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~--~~~~~~~ 388 (413)
+.|+|+-+.+|+|+++.-|++.--.|...|+.|.|+...+++ |......
T Consensus 810 GVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTv 860 (901)
T KOG4439|consen 810 GVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTV 860 (901)
T ss_pred cceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcH
Confidence 999999999999999999999999999999999998655443 4444443
No 153
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.71 E-value=2e-14 Score=141.70 Aligned_cols=106 Identities=19% Similarity=0.329 Sum_probs=76.1
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHh----cCCCeEEEEeCccccCCCCCC--CCEE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFR----SGSSRVLITTDLLARGIDVQQ--VSLV 351 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~----~~~~~vli~t~~~~~G~d~~~--~~~v 351 (413)
..+.++|+++|.+..+.+++.|....-......+.. .+.++++.|+ .++..||++|..+.+|||+|+ +++|
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 345689999999999999999975321223444432 4677777776 467789999999999999996 7889
Q ss_pred EEcCCCCC------------------------------hhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 352 INYDLPTQ------------------------------PENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 352 i~~~~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
|+.+.|.. ...+.|.+||.-|...+.-+++++++.
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 98887641 113579999999986554445555443
No 154
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.70 E-value=4.3e-15 Score=143.85 Aligned_cols=293 Identities=12% Similarity=0.077 Sum_probs=169.9
Q ss_pred EEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchH----HHHHHHh
Q 015093 81 IQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVR----EDQRILS 156 (413)
Q Consensus 81 lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 156 (413)
+..+.+|||||.+|+-.+.+.+..++ .+||++|.+.|..|+.+.++..+. +..+..++++.... .+.....
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk---~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGR---GALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCC---eEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhC
Confidence 44444699999999888877776543 899999999999999999988663 25677788766544 3444455
Q ss_pred cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC-----cHHHHHHHHhhCCCCceEEEEeeeCChhHHHHH
Q 015093 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-----FKDQIYDIFQHLPGKIQVGVFSATMPPEALEIT 231 (413)
Q Consensus 157 ~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-----~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~ 231 (413)
+...|+|+|-..++ ..+.++++||+||=|.-.... +...--.+.+....++.+|+.||||+-+.....
T Consensus 239 G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 239 GQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred CCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 67899999976664 456678999999999743221 233333344444557889999999985544333
Q ss_pred HHhcCCCEEEEecCCccccCCceEEEEEe-----Cccc---cHHHHHHHHH-HhcCCCcEEEEEcCcccHHHH-HHHHhh
Q 015093 232 RKFMNKPVRILVKRDELTLEGIKQFHVNV-----DKEE---WKLDTLCDLY-ETLAITQSVIFVNTRRKVDWL-TDQMRS 301 (413)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~~~~~l~~~~-~~~~~~~~lIf~~~~~~a~~l-~~~l~~ 301 (413)
...................+.+....... +... .-...+.+.+ +....+++|||.|.+-.+-.+ |..+..
T Consensus 312 ~~g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrGyap~l~C~~Cg~ 391 (665)
T PRK14873 312 ESGWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRGYVPSLACARCRT 391 (665)
T ss_pred hcCcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCCCCCeeEhhhCcC
Confidence 22211111111111111122222221110 0000 0112233333 333344999999988665543 333321
Q ss_pred ------CCCeeE---------eecCCC--------------------C------------------HHHHHHHHHHHhcC
Q 015093 302 ------RDHTVS---------ATHGDM--------------------D------------------QNSRDIIMREFRSG 328 (413)
Q Consensus 302 ------~~~~~~---------~~~~~~--------------------~------------------~~~r~~~~~~f~~~ 328 (413)
++.... .++.+. . ..+++.+++.|. +
T Consensus 392 ~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d~~l~~~~-~ 470 (665)
T PRK14873 392 PARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSGGDQVVDTVD-A 470 (665)
T ss_pred eeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEChHHHHHhhc-c
Confidence 110000 000000 0 012345677776 4
Q ss_pred CCeEEEEeC----ccccCCCCCCCCEEEEcCCCC------------ChhHHHhhhcccCCCCCcceEEEEeccccHHHHH
Q 015093 329 SSRVLITTD----LLARGIDVQQVSLVINYDLPT------------QPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLA 392 (413)
Q Consensus 329 ~~~vli~t~----~~~~G~d~~~~~~vi~~~~~~------------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 392 (413)
+.+|||+|+ ++. +++..|+.++... ....+.|..||+||.++.|.+++.. ..+...+.
T Consensus 471 ~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~-~p~~~~~~ 544 (665)
T PRK14873 471 GPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA-ESSLPTVQ 544 (665)
T ss_pred CCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe-CCCCHHHH
Confidence 899999999 555 3556665544321 2345689999999998899999885 54444443
No 155
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.68 E-value=7.8e-15 Score=142.13 Aligned_cols=125 Identities=19% Similarity=0.251 Sum_probs=107.4
Q ss_pred cHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCC--eEEEEeCccc
Q 015093 265 WKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSS--RVLITTDLLA 340 (413)
Q Consensus 265 ~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~--~vli~t~~~~ 340 (413)
.|+..|..++.+. .+.++|||..-.+..+.+-..|+-+|+-...+.|.++.++|+...+.|+.+.. .+|++|...+
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSgg 1339 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGG 1339 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCc
Confidence 4667777777665 55799999999999999999999999999999999999999999999998753 4678899999
Q ss_pred cCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCc--ceEEEEeccccHH
Q 015093 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GVAINFVTRDDDR 389 (413)
Q Consensus 341 ~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~~~~ 389 (413)
.|||+.+.+.||+||..|++.--.|.-.|+.|.|+. -..|.++++...+
T Consensus 1340 vGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIE 1390 (1958)
T KOG0391|consen 1340 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIE 1390 (1958)
T ss_pred cccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHH
Confidence 999999999999999999999999999999998875 4566677766443
No 156
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.67 E-value=9.1e-16 Score=141.82 Aligned_cols=125 Identities=21% Similarity=0.306 Sum_probs=105.9
Q ss_pred cHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCe-EEEEeCcccc
Q 015093 265 WKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSR-VLITTDLLAR 341 (413)
Q Consensus 265 ~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~-vli~t~~~~~ 341 (413)
.++..|..++.+. .+.++|+|.+-.+....+-++|.-+++....+.|.....+|..++.+|+...+- +|++|.+.+.
T Consensus 1028 gKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGL 1107 (1185)
T KOG0388|consen 1028 GKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGL 1107 (1185)
T ss_pred cceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcc
Confidence 3555566666554 456899999999999999999999999999999999999999999999986554 5688999999
Q ss_pred CCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcc--eEEEEeccccHH
Q 015093 342 GIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG--VAINFVTRDDDR 389 (413)
Q Consensus 342 G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g--~~~~~~~~~~~~ 389 (413)
|||+...+.||+++..|++..-.|.+.|++|.|+.. .++.++.....+
T Consensus 1108 GINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvE 1157 (1185)
T KOG0388|consen 1108 GINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVE 1157 (1185)
T ss_pred cccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHH
Confidence 999999999999999999999999999999999754 466667766554
No 157
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.65 E-value=3.8e-14 Score=143.40 Aligned_cols=285 Identities=15% Similarity=0.138 Sum_probs=168.3
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHh-
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS- 156 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 156 (413)
+..+|+.-+|||||++....+- .+......+++++||.++.|-.|+.+.+..+........ ...+.....+.+.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~-~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l~~ 348 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLAR-LLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELLED 348 (962)
T ss_pred CceEEEeecCCchHHHHHHHHH-HHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHHhc
Confidence 4599999999999998755443 333335567999999999999999999999876443322 2233333344444
Q ss_pred cCCcEEEeChHHHHHHHHcCC-C-CCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHH-HHH
Q 015093 157 AGVHVVVGTPGRVFDMLRRQS-L-RPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEI-TRK 233 (413)
Q Consensus 157 ~~~~Iii~T~~~l~~~~~~~~-~-~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~-~~~ 233 (413)
....|++||.++|........ . ....--+||+||||+.-.. .....+...++ +...+++|+||....... ...
T Consensus 349 ~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G---~~~~~~~~~~~-~a~~~gFTGTPi~~~d~~tt~~ 424 (962)
T COG0610 349 GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYG---ELAKLLKKALK-KAIFIGFTGTPIFKEDKDTTKD 424 (962)
T ss_pred CCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcccc---HHHHHHHHHhc-cceEEEeeCCccccccccchhh
Confidence 334899999999988776541 1 1222347999999986433 33333333444 467899999996432222 244
Q ss_pred hcCCCEEEEecCCccccCCceEEEEEeC----ccc---------------------------------------c-HHHH
Q 015093 234 FMNKPVRILVKRDELTLEGIKQFHVNVD----KEE---------------------------------------W-KLDT 269 (413)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---------------------------------------~-~~~~ 269 (413)
.++..++.+..........+-...+... ... . ....
T Consensus 425 ~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~ 504 (962)
T COG0610 425 VFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLIRA 504 (962)
T ss_pred hhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHHHH
Confidence 4555444443332222111111111100 000 0 0000
Q ss_pred ---HHH-HHH-hcCCCcEEEEEcCcccHHHHHHHHhhCCCe----------eEee-------------cCCCCHHHHHHH
Q 015093 270 ---LCD-LYE-TLAITQSVIFVNTRRKVDWLTDQMRSRDHT----------VSAT-------------HGDMDQNSRDII 321 (413)
Q Consensus 270 ---l~~-~~~-~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~----------~~~~-------------~~~~~~~~r~~~ 321 (413)
+.. +.+ .....++++.++++..+..+++........ +..+ |.. ....+...
T Consensus 505 a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 583 (962)
T COG0610 505 AKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LKDEKKDL 583 (962)
T ss_pred HHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HHHHHhhh
Confidence 111 111 223457888888888555555554332100 0000 111 12223334
Q ss_pred HHHH--hcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCC
Q 015093 322 MREF--RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 373 (413)
Q Consensus 322 ~~~f--~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 373 (413)
...| .....++||.++++-+|+|.|.++++.. +-|.-....+|.+.|+.|.
T Consensus 584 ~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYv-DK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 584 IKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYV-DKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred hhhhcCcCCCCCEEEEEccccccCCccccceEEe-ccccccchHHHHHHHhccC
Confidence 4443 4567899999999999999999998865 5557778999999999996
No 158
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.63 E-value=1.4e-15 Score=108.53 Aligned_cols=81 Identities=41% Similarity=0.752 Sum_probs=77.1
Q ss_pred HHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCC
Q 015093 294 WLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 373 (413)
Q Consensus 294 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 373 (413)
.+++.|+..++.+..+||+++..+|.++++.|+++...++++|+++++|+|+|.+++||+++++++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 015093 374 G 374 (413)
Q Consensus 374 g 374 (413)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 159
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.60 E-value=3.1e-14 Score=135.62 Aligned_cols=122 Identities=21% Similarity=0.269 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhh----------------------CCCeeEeecCCCCHHHHHHH
Q 015093 266 KLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRS----------------------RDHTVSATHGDMDQNSRDII 321 (413)
Q Consensus 266 ~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~----------------------~~~~~~~~~~~~~~~~r~~~ 321 (413)
+.-.|+++++.. -+.+.|||.+|......+-.+|.- .|.....+.|.....+|+++
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 344556666544 456899999999998888888752 25567788899999999999
Q ss_pred HHHHhcCC----CeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCc--ceEEEEecccc
Q 015093 322 MREFRSGS----SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GVAINFVTRDD 387 (413)
Q Consensus 322 ~~~f~~~~----~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~~ 387 (413)
.+.|++.. .-.||+|.+.+.|+|+-.++-||+++..|++..-.|.+=|+.|.|+. -++|.|+....
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGT 1278 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGT 1278 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhccc
Confidence 99998642 23889999999999999999999999999999999999999999974 55555565543
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.60 E-value=3.6e-13 Score=129.01 Aligned_cols=290 Identities=12% Similarity=0.103 Sum_probs=180.0
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSA 157 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
.-.+|.+|+|||||.+.+-++.+.+. ..+.+++++..+++|+.+....++...-. +.. .+...+.. .....
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~--~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv-~Y~d~~~~-----~i~~~ 120 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALK--NPDKSVLVVSHRRSLTKSLAERFKKAGLS-GFV-NYLDSDDY-----IIDGR 120 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhcc--CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-cce-eeeccccc-----ccccc
Confidence 33789999999999877655554432 23458999999999999999988764221 211 11111110 00012
Q ss_pred CCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcH-------HHHHHHHhhCCCCceEEEEeeeCChhHHHH
Q 015093 158 GVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFK-------DQIYDIFQHLPGKIQVGVFSATMPPEALEI 230 (413)
Q Consensus 158 ~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~-------~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~ 230 (413)
..+-++.+.++|.+... ..+.++++||+||+-.....-+. ..+..+...+.+...+|++-|++.....++
T Consensus 121 ~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdF 197 (824)
T PF02399_consen 121 PYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDF 197 (824)
T ss_pred ccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHH
Confidence 35788888888865432 23455899999999876543222 223333444456778999999999988888
Q ss_pred HHHhcCCCEEEEecCCccccC--CceEEEEE---------------------------------eCccccHHHHHHHHHH
Q 015093 231 TRKFMNKPVRILVKRDELTLE--GIKQFHVN---------------------------------VDKEEWKLDTLCDLYE 275 (413)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------------------------------~~~~~~~~~~l~~~~~ 275 (413)
+..+.+......+..+...+. .-...... .............++.
T Consensus 198 l~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~ 277 (824)
T PF02399_consen 198 LASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLA 277 (824)
T ss_pred HHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHH
Confidence 888765433222211111100 00000000 0000112233334444
Q ss_pred hc-CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCC--CCEEE
Q 015093 276 TL-AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQ--VSLVI 352 (413)
Q Consensus 276 ~~-~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~--~~~vi 352 (413)
.. .++++.||+.+...++.+++..+.....+..++|.-+.. ++ + .-++.+|++-|+++..|+++.. .+.++
T Consensus 278 ~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~---dv-~--~W~~~~VviYT~~itvG~Sf~~~HF~~~f 351 (824)
T PF02399_consen 278 RLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE---DV-E--SWKKYDVVIYTPVITVGLSFEEKHFDSMF 351 (824)
T ss_pred HHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc---cc-c--cccceeEEEEeceEEEEeccchhhceEEE
Confidence 43 456788999999999999999998888888888875544 22 2 2567999999999999999864 44454
Q ss_pred EcCCC----CChhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 353 NYDLP----TQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 353 ~~~~~----~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
.+-.| .+..+..|++||+..- .....+++++..
T Consensus 352 ~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 352 AYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred EEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 43222 3455689999999544 456777777654
No 161
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.54 E-value=3.3e-14 Score=107.66 Aligned_cols=136 Identities=21% Similarity=0.233 Sum_probs=80.4
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL 155 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (413)
+|+-.++-.++|+|||.-.+..++...... +.++||+.||+.++..+.+.++.. + +.....-.. . ..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~--~~rvLvL~PTRvva~em~~aL~~~----~--~~~~t~~~~-~----~~ 69 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR--RLRVLVLAPTRVVAEEMYEALKGL----P--VRFHTNARM-R----TH 69 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT--T--EEEEESSHHHHHHHHHHTTTS----S--EEEESTTSS--------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc--cCeEEEecccHHHHHHHHHHHhcC----C--cccCceeee-c----cc
Confidence 455678999999999987665554433222 349999999999998877766543 2 222221110 0 11
Q ss_pred hcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhC--CCCceEEEEeeeCChhH
Q 015093 156 SAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHL--PGKIQVGVFSATMPPEA 227 (413)
Q Consensus 156 ~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~--~~~~~~i~lSAT~~~~~ 227 (413)
..+..|-++|+..+.+.+.+ +....++++||+||||.. +.... .....+..+ ....++|++||||+...
T Consensus 70 ~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~-Dp~sI-A~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT-DPTSI-AARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT---SHHHH-HHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred cCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC-CHHHH-hhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 34567899999999888876 556778999999999963 33211 111122222 12468999999998654
No 162
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.53 E-value=3.3e-11 Score=109.92 Aligned_cols=290 Identities=14% Similarity=0.191 Sum_probs=200.4
Q ss_pred ccCceeEEEEcccHHHHHHHHHHHHHhhccc-------------Cce-------EEEEECCcchHHHHHHHh--------
Q 015093 105 ESLQCQALVLAPTRELAQQIEKVMRALGDYM-------------GVK-------VHACVGGTSVREDQRILS-------- 156 (413)
Q Consensus 105 ~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~-------------~~~-------~~~~~~~~~~~~~~~~~~-------- 156 (413)
+-..++|||++|++..|-++.+.+.++.... +.. ...........+....+.
T Consensus 34 GftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Fr 113 (442)
T PF06862_consen 34 GFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFR 113 (442)
T ss_pred CCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEE
Confidence 3456899999999999999888887765431 100 000000111112222221
Q ss_pred ----------------cCCcEEEeChHHHHHHHHc------CCCCCCCccEEEEccchhhh--ccCcHHHHHHHHhhCCC
Q 015093 157 ----------------AGVHVVVGTPGRVFDMLRR------QSLRPDYIRMFVLDEADEML--SRGFKDQIYDIFQHLPG 212 (413)
Q Consensus 157 ----------------~~~~Iii~T~~~l~~~~~~------~~~~~~~~~~iIiDE~h~~~--~~~~~~~~~~~~~~~~~ 212 (413)
..+||||++|=.|...+.. ..-.++.+.++|+|.+|.+. +|.....+.+.++..|.
T Consensus 114 lGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~ 193 (442)
T PF06862_consen 114 LGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPK 193 (442)
T ss_pred EeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCC
Confidence 2469999999999887764 12236678999999999866 44444555555666554
Q ss_pred C---------------------ceEEEEeeeCChhHHHHHHHhcCCCE---EEEecCC-----ccccCCceEEEEEeCcc
Q 015093 213 K---------------------IQVGVFSATMPPEALEITRKFMNKPV---RILVKRD-----ELTLEGIKQFHVNVDKE 263 (413)
Q Consensus 213 ~---------------------~~~i~lSAT~~~~~~~~~~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~~~~~ 263 (413)
. .|.+++|+...++...+....+.+.. .+..... ......+.+.+..++..
T Consensus 194 ~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~ 273 (442)
T PF06862_consen 194 KSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCS 273 (442)
T ss_pred CCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCC
Confidence 2 58999999999999888887554422 1222222 12334566666665432
Q ss_pred c------cHHH----HHHHHHH-hcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeE
Q 015093 264 E------WKLD----TLCDLYE-TLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRV 332 (413)
Q Consensus 264 ~------~~~~----~l~~~~~-~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 332 (413)
. .... .+..-+. ....+.+|||+||.-+-..+.++|++.+.....++.-++..+-...-..|.+|+.++
T Consensus 274 s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~i 353 (442)
T PF06862_consen 274 SPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPI 353 (442)
T ss_pred CcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceE
Confidence 1 1111 1222223 445578999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcc--ccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCC------CcceEEEEeccccHHHHHHH
Q 015093 333 LITTDLL--ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG------RKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 333 li~t~~~--~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g------~~g~~~~~~~~~~~~~~~~~ 394 (413)
|+.|.-+ -.-..+.++++||++++|..+.-|-..+.-..... ....|.++++.-|.-.++.+
T Consensus 354 LL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 354 LLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred EEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 9999843 35677889999999999999988877775544432 25789999998887766655
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.52 E-value=1e-13 Score=124.92 Aligned_cols=152 Identities=17% Similarity=0.112 Sum_probs=93.3
Q ss_pred HHHhhhhhhh-------------CCCcEEEeCCCCCchhHHHHHHHHHhcccccC--ceeEEEEcccHHHHHHHHHHHHH
Q 015093 66 IQQRGIVPFC-------------KGLDVIQQAQSGTGKTATFCSGILQQLDYESL--QCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 66 ~Q~~~~~~~~-------------~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~--~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
||.+++..+. ..+.++++.++|+|||..++..+......... ...+||+||. .+..||.+++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 4666666552 33569999999999998886655432222221 1259999999 888999999999
Q ss_pred hhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHH--------HHHHcCCCCCCCccEEEEccchhhhccCcHHH
Q 015093 131 LGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVF--------DMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQ 202 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~--------~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~ 202 (413)
+......++....+...............+++|+|++.+. ..+.. .++++||+||+|.+.+. ...
T Consensus 80 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~-----~~~~~vIvDEaH~~k~~--~s~ 152 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQ-----IKWDRVIVDEAHRLKNK--DSK 152 (299)
T ss_dssp HSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT-----SEEEEEEETTGGGGTTT--TSH
T ss_pred ccccccccccccccccccccccccccccceeeecccccccccccccccccccc-----ccceeEEEecccccccc--ccc
Confidence 9865556777776665111211112345789999999998 22222 23799999999998433 333
Q ss_pred HHHHHhhCCCCceEEEEeeeCChh
Q 015093 203 IYDIFQHLPGKIQVGVFSATMPPE 226 (413)
Q Consensus 203 ~~~~~~~~~~~~~~i~lSAT~~~~ 226 (413)
....+..+. ...++++||||..+
T Consensus 153 ~~~~l~~l~-~~~~~lLSgTP~~n 175 (299)
T PF00176_consen 153 RYKALRKLR-ARYRWLLSGTPIQN 175 (299)
T ss_dssp HHHHHHCCC-ECEEEEE-SS-SSS
T ss_pred ccccccccc-cceEEeeccccccc
Confidence 334444454 56688899998653
No 164
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.52 E-value=1.7e-12 Score=134.26 Aligned_cols=322 Identities=20% Similarity=0.206 Sum_probs=207.3
Q ss_pred CCCcHHHHhhhhhhhC-----CCcEEEeCCCCCchhHHHHHHHHHhcccccC-ceeEEEEcccHHHHHHHHHHHHHhhcc
Q 015093 61 EKPSAIQQRGIVPFCK-----GLDVIQQAQSGTGKTATFCSGILQQLDYESL-QCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~-----~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~-~~~~lvl~P~~~l~~q~~~~~~~~~~~ 134 (413)
..+++||.+.++.+.. +.+.++...+|.|||...+..+...+..... .+..+++||+ ++..+|.+++.++...
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~~ 415 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAPD 415 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCcc
Confidence 4789999999977552 5668889999999998887666553333222 3589999997 5577799999888775
Q ss_pred cCceEEEEECCcc-----hHHHHHHHhc----CCcEEEeChHHHHHHH-HcCCCCCCCccEEEEccchhhhccCcHHHHH
Q 015093 135 MGVKVHACVGGTS-----VREDQRILSA----GVHVVVGTPGRVFDML-RRQSLRPDYIRMFVLDEADEMLSRGFKDQIY 204 (413)
Q Consensus 135 ~~~~~~~~~~~~~-----~~~~~~~~~~----~~~Iii~T~~~l~~~~-~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~ 204 (413)
... +...+|... .......... ..+++++|++.+.... ....+....+..+|+||+|.+.+.. .....
T Consensus 416 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s~~~~ 493 (866)
T COG0553 416 LRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-SSEGK 493 (866)
T ss_pred ccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-hHHHH
Confidence 543 555555553 1122222222 2689999999998743 1222334457899999999975543 22222
Q ss_pred HHHhhCCCCceEEEEeeeCCh-hHHHHH---H----------------HhcCCCEEEEec--------------------
Q 015093 205 DIFQHLPGKIQVGVFSATMPP-EALEIT---R----------------KFMNKPVRILVK-------------------- 244 (413)
Q Consensus 205 ~~~~~~~~~~~~i~lSAT~~~-~~~~~~---~----------------~~~~~~~~~~~~-------------------- 244 (413)
.+. .+.... .+.+|+||-. .+.++. . ..+..+......
T Consensus 494 ~l~-~~~~~~-~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 571 (866)
T COG0553 494 ALQ-FLKALN-RLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSP 571 (866)
T ss_pred HHH-HHhhcc-eeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHH
Confidence 222 333222 3667888721 110000 0 000000000000
Q ss_pred -------CC-----ccc-------------------------------------cCC----------------------c
Q 015093 245 -------RD-----ELT-------------------------------------LEG----------------------I 253 (413)
Q Consensus 245 -------~~-----~~~-------------------------------------~~~----------------------~ 253 (413)
.. ... ... +
T Consensus 572 f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~ 651 (866)
T COG0553 572 FILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQI 651 (866)
T ss_pred HhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHh
Confidence 00 000 000 0
Q ss_pred eEEEEEe-Cc---------------------------cc-cHHHHHHHHH-Hh--cCCC--cEEEEEcCcccHHHHHHHH
Q 015093 254 KQFHVNV-DK---------------------------EE-WKLDTLCDLY-ET--LAIT--QSVIFVNTRRKVDWLTDQM 299 (413)
Q Consensus 254 ~~~~~~~-~~---------------------------~~-~~~~~l~~~~-~~--~~~~--~~lIf~~~~~~a~~l~~~l 299 (413)
....... .. .. .+...+..++ .. ..+. ++++|.+......-+...+
T Consensus 652 ~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l 731 (866)
T COG0553 652 CNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYL 731 (866)
T ss_pred ccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHH
Confidence 0000000 00 00 4556666666 22 2334 8999999999999999999
Q ss_pred hhCCCeeEeecCCCCHHHHHHHHHHHhcC--CCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcc
Q 015093 300 RSRDHTVSATHGDMDQNSRDIIMREFRSG--SSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG 377 (413)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g 377 (413)
+..++....++|.++...|...++.|.++ ..-+++++.+.+.|+|+...++||++++.|++....|...|+.|.|+..
T Consensus 732 ~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~ 811 (866)
T COG0553 732 KALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKR 811 (866)
T ss_pred HhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcc
Confidence 99998899999999999999999999986 3445677789999999999999999999999999999999999998764
Q ss_pred e--EEEEecccc
Q 015093 378 V--AINFVTRDD 387 (413)
Q Consensus 378 ~--~~~~~~~~~ 387 (413)
. ++.+++...
T Consensus 812 ~v~v~r~i~~~t 823 (866)
T COG0553 812 PVKVYRLITRGT 823 (866)
T ss_pred eeEEEEeecCCc
Confidence 4 555555554
No 165
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.47 E-value=2.2e-12 Score=124.55 Aligned_cols=314 Identities=19% Similarity=0.227 Sum_probs=195.4
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.|+.+|.-.--.+ +..-+..+.||-|||+++.+|+.-.... +..+.+++..--|+..-.+++..+...+++++++
T Consensus 80 ~~~dVQliG~i~l--h~g~iaEM~TGEGKTL~atlp~ylnaL~---gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~ 154 (822)
T COG0653 80 RHFDVQLLGGIVL--HLGDIAEMRTGEGKTLVATLPAYLNALA---GKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGV 154 (822)
T ss_pred ChhhHHHhhhhhh--cCCceeeeecCCchHHHHHHHHHHHhcC---CCCcEEeeehHHhhhhCHHHHHHHHHHcCCceee
Confidence 5666666554443 4456999999999999998877544333 3378888889999998899999999999999999
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHH-HHHHcC------CCCCCCccEEEEccchhhh-cc------------C---
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVF-DMLRRQ------SLRPDYIRMFVLDEADEML-SR------------G--- 198 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~-~~~~~~------~~~~~~~~~iIiDE~h~~~-~~------------~--- 198 (413)
...+......... -.|+|.++|.+.|- +.++.. ......+.+.|+||++.+. +. .
T Consensus 155 ~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~~~ 232 (822)
T COG0653 155 ILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDSSE 232 (822)
T ss_pred ccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccCch
Confidence 9988865544433 45899999987762 222111 1122346788888888643 11 0
Q ss_pred cHHHHHHHHhhCCCC-----------------------------------------------------------------
Q 015093 199 FKDQIYDIFQHLPGK----------------------------------------------------------------- 213 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 213 (413)
....+..+...+...
T Consensus 233 ~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~e 312 (822)
T COG0653 233 LYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGE 312 (822)
T ss_pred HHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecCe
Confidence 112222222111100
Q ss_pred ----------------------------------------------------ceEEEEeeeCChhHHHHHHHhcCCCEEE
Q 015093 214 ----------------------------------------------------IQVGVFSATMPPEALEITRKFMNKPVRI 241 (413)
Q Consensus 214 ----------------------------------------------------~~~i~lSAT~~~~~~~~~~~~~~~~~~~ 241 (413)
.++.+||+|......++...|....+.+
T Consensus 313 v~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv~i 392 (822)
T COG0653 313 VVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVVVI 392 (822)
T ss_pred EEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCceeec
Confidence 1333444444333333333332222222
Q ss_pred EecCCccccCCceEEEEEeCccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHH
Q 015093 242 LVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRD 319 (413)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~ 319 (413)
.....-.+.+. ..........+..++...++.. .++|+||-..+++..+.+.+.|.+.|++..++.......+-+
T Consensus 393 PTnrp~~R~D~---~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~ 469 (822)
T COG0653 393 PTNRPIIRLDE---PDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAE 469 (822)
T ss_pred cCCCcccCCCC---ccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHH
Confidence 22211111111 1111223345666666555443 667999999999999999999999999999999887744444
Q ss_pred HHHHHHhcCCC-eEEEEeCccccCCCCCCCC-----------EEEEcCCCCChhHHHhhhcccCCCCCcceEEEEecccc
Q 015093 320 IIMREFRSGSS-RVLITTDLLARGIDVQQVS-----------LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 387 (413)
Q Consensus 320 ~~~~~f~~~~~-~vli~t~~~~~G~d~~~~~-----------~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 387 (413)
.+.+ .|.. -|-|+|+++++|-|+.--. +||-...-.|...--|.-||+||.|-+|....|++-.|
T Consensus 470 Iia~---AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 470 IIAQ---AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred HHhh---cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 3333 3333 4779999999999985222 23333333344444599999999999999988887665
Q ss_pred H
Q 015093 388 D 388 (413)
Q Consensus 388 ~ 388 (413)
.
T Consensus 547 ~ 547 (822)
T COG0653 547 D 547 (822)
T ss_pred H
Confidence 4
No 166
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.32 E-value=2.3e-11 Score=107.44 Aligned_cols=70 Identities=23% Similarity=0.163 Sum_probs=56.1
Q ss_pred CCcHHHHh----hhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccC---ceeEEEEcccHHHHHHHHHHHHHh
Q 015093 62 KPSAIQQR----GIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESL---QCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 62 ~~~~~Q~~----~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~---~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
+||+.|.+ ++..+..|+++++.+|||+|||++++.+++..+..... +.+++|.++|.++..|...++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 46999999 55556678899999999999999999999865543332 238999999999988887777665
No 167
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.32 E-value=2.3e-11 Score=107.44 Aligned_cols=70 Identities=23% Similarity=0.163 Sum_probs=56.1
Q ss_pred CCcHHHHh----hhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccC---ceeEEEEcccHHHHHHHHHHHHHh
Q 015093 62 KPSAIQQR----GIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESL---QCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 62 ~~~~~Q~~----~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~---~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
+||+.|.+ ++..+..|+++++.+|||+|||++++.+++..+..... +.+++|.++|.++..|...++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 46999999 55556678899999999999999999999865543332 238999999999988887777665
No 168
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.28 E-value=2e-09 Score=106.79 Aligned_cols=143 Identities=15% Similarity=0.233 Sum_probs=85.8
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH-----hhc-cc---CceEEEEECCc--
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA-----LGD-YM---GVKVHACVGGT-- 146 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~-----~~~-~~---~~~~~~~~~~~-- 146 (413)
.++.+.++||+|||.+|+..+++.....+ ..++||+||+.++.+.+...+.. ... .+ .+....+.++.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~-~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG-LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 46999999999999999988887654433 45899999999998887766541 111 11 23333333322
Q ss_pred -----chHHHHHHHhc-------CCcEEEeChHHHHHHHH-cCC--------C--CCCC----ccEEEEccchhhhccCc
Q 015093 147 -----SVREDQRILSA-------GVHVVVGTPGRVFDMLR-RQS--------L--RPDY----IRMFVLDEADEMLSRGF 199 (413)
Q Consensus 147 -----~~~~~~~~~~~-------~~~Iii~T~~~l~~~~~-~~~--------~--~~~~----~~~iIiDE~h~~~~~~~ 199 (413)
......+.+.. ..+|+++|.++|..... ... . .... --+||+||.|++...
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~-- 216 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD-- 216 (986)
T ss_pred ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc--
Confidence 11122122221 36899999999865321 110 0 0001 137999999998432
Q ss_pred HHHHHHHHhhCCCCceEEEEeeeCCh
Q 015093 200 KDQIYDIFQHLPGKIQVGVFSATMPP 225 (413)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~lSAT~~~ 225 (413)
...+..+ ..+.+.+ ++..|||.+.
T Consensus 217 ~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 217 NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 3344444 4443333 5669999864
No 169
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.16 E-value=1e-09 Score=94.27 Aligned_cols=128 Identities=21% Similarity=0.250 Sum_probs=94.8
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEE
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVH 140 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
..|++.|.-+.-.+.+|+ ++.+.||-|||+++.+++.-.... +..+-|++.+..|+..-++++..+...+|+++.
T Consensus 76 ~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~---G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~ 150 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ---GKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVG 150 (266)
T ss_dssp ----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT---SS-EEEEESSHHHHHHHHHHHHHHHHHTT--EE
T ss_pred CcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh---cCCcEEEeccHHHhhccHHHHHHHHHHhhhccc
Confidence 389999999998887766 999999999999987766544443 348999999999999999999999999999999
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHH-HHHcCC------CCCCCccEEEEccchhhh
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFD-MLRRQS------LRPDYIRMFVLDEADEML 195 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~-~~~~~~------~~~~~~~~iIiDE~h~~~ 195 (413)
...++.......... .++|+++|...|.- .++..- .....+.++|+||+|.++
T Consensus 151 ~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 151 IITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp EEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred cCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999988755544443 36899999998864 343211 113557899999999865
No 170
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=3.2e-09 Score=96.14 Aligned_cols=336 Identities=17% Similarity=0.192 Sum_probs=200.7
Q ss_pred CCCCCcHHHHhhhhhhhCCCcEEE-eCCCCCch--hHHHHHHHHHhcc----------------------------cccC
Q 015093 59 GFEKPSAIQQRGIVPFCKGLDVIQ-QAQSGTGK--TATFCSGILQQLD----------------------------YESL 107 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~~~~~~~~lv-~~~tGsGK--T~~~~~~i~~~l~----------------------------~~~~ 107 (413)
.-..+++.|.+.+..+...++++. ....+.|+ +-.|++-+++++. .+-.
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 335899999999999999998654 44445565 3445555554441 1122
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCc-e--------E-EEEE---------------------CCcch--------
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGV-K--------V-HACV---------------------GGTSV-------- 148 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~-~--------~-~~~~---------------------~~~~~-------- 148 (413)
.+++|||||+++-|-...+.+..+..+.+- + . .-.. |.++.
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 478999999999999888888877433211 0 0 0000 11000
Q ss_pred -HHHHHHH--hcCCcEEEeChHHHHHHHHcCC------CCCCCccEEEEccchhhhccCcH--HHHHHHHhhCCCC----
Q 015093 149 -REDQRIL--SAGVHVVVGTPGRVFDMLRRQS------LRPDYIRMFVLDEADEMLSRGFK--DQIYDIFQHLPGK---- 213 (413)
Q Consensus 149 -~~~~~~~--~~~~~Iii~T~~~l~~~~~~~~------~~~~~~~~iIiDE~h~~~~~~~~--~~~~~~~~~~~~~---- 213 (413)
..-.+.. -...+|+||+|=.|.-.+...+ -.++.+.++|+|.+|-+...+|. ..+...++..|..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcccccCC
Confidence 0000111 1246999999999887776322 12455789999999987754433 3334444444432
Q ss_pred -----------------ceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEE---------eCc----c
Q 015093 214 -----------------IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVN---------VDK----E 263 (413)
Q Consensus 214 -----------------~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~----~ 263 (413)
.|.+++|+-..+........++.+.........-.....+.+.... +.. .
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 2444555554455544444444432211111111111011111111 111 0
Q ss_pred ccHHHH-HHHHHHhc---CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc
Q 015093 264 EWKLDT-LCDLYETL---AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLL 339 (413)
Q Consensus 264 ~~~~~~-l~~~~~~~---~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~ 339 (413)
...... +..++.+. ....+||+.|+.-.-..+..++++..+....++.-.+...-...-+.|..|...||+-|.-+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 112211 12222222 23468999999999999999999988777777766666666677788899999999999744
Q ss_pred --ccCCCCCCCCEEEEcCCCCChhH---HHhhhcccCCCCC----cceEEEEeccccHHHHHHH
Q 015093 340 --ARGIDVQQVSLVINYDLPTQPEN---YLHRIGRSGRFGR----KGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 340 --~~G~d~~~~~~vi~~~~~~s~~~---~~Q~~GR~~R~g~----~g~~~~~~~~~~~~~~~~~ 394 (413)
-+-.++.+++.||++.+|..+.- ++.+++|..-.|+ .-.|.++|+.-|.-.+..+
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 46788999999999999988754 4677777654442 3578888887776555544
No 171
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.11 E-value=1.3e-08 Score=96.28 Aligned_cols=110 Identities=17% Similarity=0.281 Sum_probs=87.6
Q ss_pred CcEEEEEcCcccHHHHHHHHhhCC------------------CeeEeecCCCCHHHHHHHHHHHhcCC---CeEEEEeCc
Q 015093 280 TQSVIFVNTRRKVDWLTDQMRSRD------------------HTVSATHGDMDQNSRDIIMREFRSGS---SRVLITTDL 338 (413)
Q Consensus 280 ~~~lIf~~~~~~a~~l~~~l~~~~------------------~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vli~t~~ 338 (413)
.++|||..+......+.+.|++.. .....+.|.++..+|++++.+|.+.. .-++++|..
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 468899998888888888887541 22445677788899999999998642 247788999
Q ss_pred cccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHH
Q 015093 339 LARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDR 389 (413)
Q Consensus 339 ~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 389 (413)
...|+|+-..+-+++++..|++..-.|.+-|+.|.|+..-|+++=--.|..
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~ 850 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNS 850 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhh
Confidence 999999988888888899999999999999999999877777665544443
No 172
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.07 E-value=1e-09 Score=104.95 Aligned_cols=313 Identities=16% Similarity=0.213 Sum_probs=184.5
Q ss_pred cHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccC--ceeEEEEcccHHHHHHHHHHHHH-hhcccCceEE
Q 015093 64 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESL--QCQALVLAPTRELAQQIEKVMRA-LGDYMGVKVH 140 (413)
Q Consensus 64 ~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~--~~~~lvl~P~~~l~~q~~~~~~~-~~~~~~~~~~ 140 (413)
-.+-...+..+..+..++|.+.||.|||..+...+++.+..... ...+.+.-|++-.+.-..+++.+ .+...+..++
T Consensus 380 a~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvg 459 (1282)
T KOG0921|consen 380 AQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCG 459 (1282)
T ss_pred HHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccc
Confidence 33445566666677889999999999999998888887765442 23567777877766666555532 2222222221
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhh-ccCcHHHHHHHHhhCCCCceEEEE
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEML-SRGFKDQIYDIFQHLPGKIQVGVF 219 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~l 219 (413)
.... .....-...--|..+|.+-+++.++... ..+.++|+||+|+.- +..+...+.+-.........++++
T Consensus 460 y~vR-----f~Sa~prpyg~i~fctvgvllr~~e~gl---rg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lm 531 (1282)
T KOG0921|consen 460 YNVR-----FDSATPRPYGSIMFCTVGVLLRMMENGL---RGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLM 531 (1282)
T ss_pred cccc-----ccccccccccceeeeccchhhhhhhhcc---cccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhh
Confidence 1110 0000001123588999999988887643 346789999999753 222333333323333346677788
Q ss_pred eeeCChhHHHH--------------------H-HHhcCCCEEEEecCCcc--------ccCCce----EEEEEeC-----
Q 015093 220 SATMPPEALEI--------------------T-RKFMNKPVRILVKRDEL--------TLEGIK----QFHVNVD----- 261 (413)
Q Consensus 220 SAT~~~~~~~~--------------------~-~~~~~~~~~~~~~~~~~--------~~~~~~----~~~~~~~----- 261 (413)
|||...+.... . ..+.....++....... ..+... ..-...+
T Consensus 532 satIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~ 611 (1282)
T KOG0921|consen 532 SATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNE 611 (1282)
T ss_pred hcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcc
Confidence 88875332111 1 11111111111000000 000000 0000000
Q ss_pred ---------cccc----HHHHHHH-HHHhcCCCcEEEEEcCcccHHHHHHHHhhC-------CCeeEeecCCCCHHHHHH
Q 015093 262 ---------KEEW----KLDTLCD-LYETLAITQSVIFVNTRRKVDWLTDQMRSR-------DHTVSATHGDMDQNSRDI 320 (413)
Q Consensus 262 ---------~~~~----~~~~l~~-~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~ 320 (413)
.... ..+.+.. +....-.+.+++|.+.=...-.++..|... .+.+...|+.....++.+
T Consensus 612 ~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrk 691 (1282)
T KOG0921|consen 612 STRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRK 691 (1282)
T ss_pred hhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhh
Confidence 0000 1111111 112223467899999888888888877643 356788899998888999
Q ss_pred HHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC------------------CCChhHHHhhhcccCCCCCcceEEEE
Q 015093 321 IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL------------------PTQPENYLHRIGRSGRFGRKGVAINF 382 (413)
Q Consensus 321 ~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~ 382 (413)
+.+....|..+++.+|++.+..+.+.++..|++.+. -.|.....|+.||++|. ++|.|..+
T Consensus 692 vf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~l 770 (1282)
T KOG0921|consen 692 VFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHL 770 (1282)
T ss_pred ccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccc
Confidence 988888899999999999999988877777665332 13667789999999997 68999888
Q ss_pred ecc
Q 015093 383 VTR 385 (413)
Q Consensus 383 ~~~ 385 (413)
++.
T Consensus 771 cs~ 773 (1282)
T KOG0921|consen 771 CSR 773 (1282)
T ss_pred cHH
Confidence 765
No 173
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=99.00 E-value=9.6e-09 Score=98.38 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=55.5
Q ss_pred CCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCC--CCc-----------ceEEEEeccccHHHHHHH
Q 015093 328 GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF--GRK-----------GVAINFVTRDDDRMLADI 394 (413)
Q Consensus 328 ~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~--g~~-----------g~~~~~~~~~~~~~~~~~ 394 (413)
...+++++..++.+|||-|++=.++-+....|..+=.|.+||+.|. +.. ..-.+++...+......+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3578999999999999999999999899989999999999999994 122 233456666666666666
Q ss_pred HHHh
Q 015093 395 QRFY 398 (413)
Q Consensus 395 ~~~~ 398 (413)
++-.
T Consensus 562 qkEI 565 (985)
T COG3587 562 QKEI 565 (985)
T ss_pred HHHH
Confidence 5543
No 174
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.99 E-value=7.3e-07 Score=83.93 Aligned_cols=104 Identities=14% Similarity=0.195 Sum_probs=72.3
Q ss_pred CCcEEEEEcCcccHHHHHHHHhhCCC-------eeEeecCCCCHHHHHHHHHHH----hcCCCeEEEEe--CccccCCCC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRSRDH-------TVSATHGDMDQNSRDIIMREF----RSGSSRVLITT--DLLARGIDV 345 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~~~~-------~~~~~~~~~~~~~r~~~~~~f----~~~~~~vli~t--~~~~~G~d~ 345 (413)
++-+++|.||.+....+.+.+++.|+ +.+++...-+ -+.+++.+ ..|...+|++. .-+++|||+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 37799999999999999999987643 2233333322 23444444 34565677665 689999999
Q ss_pred CC--CCEEEEcCCCCC--------------------------------hhHHHhhhcccCCCCCcceEEEEecc
Q 015093 346 QQ--VSLVINYDLPTQ--------------------------------PENYLHRIGRSGRFGRKGVAINFVTR 385 (413)
Q Consensus 346 ~~--~~~vi~~~~~~s--------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~ 385 (413)
.+ .+.||+++.|.. ....-|.+||+-|+-++--++++++.
T Consensus 706 ~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDK 779 (821)
T ss_pred ccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehh
Confidence 86 888998887741 11246999999999877777777753
No 175
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.84 E-value=1.4e-08 Score=98.57 Aligned_cols=102 Identities=17% Similarity=0.151 Sum_probs=88.8
Q ss_pred CcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCC-eEE-EEeCccccCCCCCCCCEEEEcCCC
Q 015093 280 TQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSS-RVL-ITTDLLARGIDVQQVSLVINYDLP 357 (413)
Q Consensus 280 ~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~-~vl-i~t~~~~~G~d~~~~~~vi~~~~~ 357 (413)
.+++||++-..-+..+...|...++....+.|.++...|.+.+..|..+.. .++ ++..+...|+++..+.+|+..++-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 489999999999999998888889999999999999999999999986543 344 666899999999999999999999
Q ss_pred CChhHHHhhhcccCCCCCcceEEE
Q 015093 358 TQPENYLHRIGRSGRFGRKGVAIN 381 (413)
Q Consensus 358 ~s~~~~~Q~~GR~~R~g~~g~~~~ 381 (413)
|++....|.+-|+.|-|+...+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999987654443
No 176
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.82 E-value=7.3e-08 Score=83.12 Aligned_cols=157 Identities=20% Similarity=0.211 Sum_probs=103.4
Q ss_pred CCcHHHHhhhhhhh----------CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 62 KPSAIQQRGIVPFC----------KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~----------~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
.+...|.+++-... .+..+++-..||.||.......|++.+..++ .+.+|++.+..|..+..+.++.+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr--~r~vwvS~s~dL~~Da~RDl~DI 114 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR--KRAVWVSVSNDLKYDAERDLRDI 114 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC--CceEEEECChhhhhHHHHHHHHh
Confidence 46777887775442 1345899999999999888777888776654 37999999999999999999987
Q ss_pred hcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCC---CC---------CCCccEEEEccchhhhccCc
Q 015093 132 GDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQS---LR---------PDYIRMFVLDEADEMLSRGF 199 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~---~~---------~~~~~~iIiDE~h~~~~~~~ 199 (413)
+.. .+.+..+..-.. .....-+..|+++||..|...-.... .. .+.=.+||+||||...+...
T Consensus 115 G~~-~i~v~~l~~~~~----~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 115 GAD-NIPVHPLNKFKY----GDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred CCC-cccceechhhcc----CcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 643 222222221000 00012245799999999977643211 11 11125899999999765432
Q ss_pred --------HHHHHHHHhhCCCCceEEEEeeeCChh
Q 015093 200 --------KDQIYDIFQHLPGKIQVGVFSATMPPE 226 (413)
Q Consensus 200 --------~~~~~~~~~~~~~~~~~i~lSAT~~~~ 226 (413)
...+..+.+.+| +.+++..|||.-.+
T Consensus 190 ~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgase 223 (303)
T PF13872_consen 190 GSKKPSKTGIAVLELQNRLP-NARVVYASATGASE 223 (303)
T ss_pred cCccccHHHHHHHHHHHhCC-CCcEEEecccccCC
Confidence 134555666676 56699999997543
No 177
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.77 E-value=1e-08 Score=84.53 Aligned_cols=147 Identities=13% Similarity=0.138 Sum_probs=75.1
Q ss_pred CCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHH-------HHHHHHhh
Q 015093 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQI-------EKVMRALG 132 (413)
Q Consensus 60 ~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~-------~~~~~~~~ 132 (413)
+...+..|..+++++....-+++.||.|||||+.++..+++.+..+. ..+++++-|..+..+.. .+.+.-+.
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~-~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGE-YDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS--SEEEEEE-S--TT----SS---------TTT
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCC-CcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 34567899999999997788999999999999999999988877644 44888888877531110 00000000
Q ss_pred cccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCC
Q 015093 133 DYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPG 212 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~ 212 (413)
...-.....+.+... ..... ....|-+.+...+. +-.+++ .+||+|||+++ ....+..++.+...
T Consensus 81 ~p~~d~l~~~~~~~~---~~~~~-~~~~Ie~~~~~~iR------Grt~~~-~~iIvDEaQN~----t~~~~k~ilTR~g~ 145 (205)
T PF02562_consen 81 RPIYDALEELFGKEK---LEELI-QNGKIEIEPLAFIR------GRTFDN-AFIIVDEAQNL----TPEELKMILTRIGE 145 (205)
T ss_dssp HHHHHHHTTTS-TTC---HHHHH-HTTSEEEEEGGGGT------T--B-S-EEEEE-SGGG------HHHHHHHHTTB-T
T ss_pred HHHHHHHHHHhChHh---HHHHh-hcCeEEEEehhhhc------Cccccc-eEEEEecccCC----CHHHHHHHHcccCC
Confidence 000000000001111 11111 23345555544321 122222 79999999987 56778889999998
Q ss_pred CceEEEEeee
Q 015093 213 KIQVGVFSAT 222 (413)
Q Consensus 213 ~~~~i~lSAT 222 (413)
+.+++++.-+
T Consensus 146 ~skii~~GD~ 155 (205)
T PF02562_consen 146 GSKIIITGDP 155 (205)
T ss_dssp T-EEEEEE--
T ss_pred CcEEEEecCc
Confidence 8888865544
No 178
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.76 E-value=4.8e-08 Score=84.61 Aligned_cols=68 Identities=25% Similarity=0.267 Sum_probs=50.9
Q ss_pred CcHHHHhhhhhhhCCCc-EEEeCCCCCchhHHHHHHHHHhc-----ccccCceeEEEEcccHHHHHHHHHHHHH
Q 015093 63 PSAIQQRGIVPFCKGLD-VIQQAQSGTGKTATFCSGILQQL-----DYESLQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 63 ~~~~Q~~~~~~~~~~~~-~lv~~~tGsGKT~~~~~~i~~~l-----~~~~~~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
|.+.|.+|+..++.... .+|.||+|+|||.+....+...+ .....+.++++++|+..-+++..+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 67889999999999998 99999999999976554444432 1244566999999999999988888776
No 179
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.75 E-value=2.5e-08 Score=80.84 Aligned_cols=111 Identities=22% Similarity=0.370 Sum_probs=74.8
Q ss_pred HHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCC--eeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC--ccccCCCCCC
Q 015093 272 DLYETLAITQSVIFVNTRRKVDWLTDQMRSRDH--TVSATHGDMDQNSRDIIMREFRSGSSRVLITTD--LLARGIDVQQ 347 (413)
Q Consensus 272 ~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~--~~~~G~d~~~ 347 (413)
++++..+ +.+|||++|.+..+.+.+.++.... ...++.. +..+..++++.|++++..||+++. .+.+|+|+|+
T Consensus 3 ~l~~~~~-g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 3 ELISAVP-GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHCCS-SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred HHHhcCC-CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 3444444 8999999999999999999987542 1122222 245688899999999999999998 9999999996
Q ss_pred --CCEEEEcCCCCCh------------------------------hHHHhhhcccCCCCCcceEEEEecc
Q 015093 348 --VSLVINYDLPTQP------------------------------ENYLHRIGRSGRFGRKGVAINFVTR 385 (413)
Q Consensus 348 --~~~vi~~~~~~s~------------------------------~~~~Q~~GR~~R~g~~g~~~~~~~~ 385 (413)
++.||+.+.|... ....|.+||+-|..++--++++++.
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 7789998887411 1247999999998765545555544
No 180
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.73 E-value=7.7e-09 Score=100.98 Aligned_cols=259 Identities=17% Similarity=0.175 Sum_probs=151.8
Q ss_pred CcHHHHhhhhhhhC-CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 63 PSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 63 ~~~~Q~~~~~~~~~-~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
..|.|...+..+-. ..++++-+|||+|||.++-.+++..+.... +.+++++.|.++|+....+.+.......|+++.-
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p-~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie 1006 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP-GSKVVYIAPDKALVKERSDDWSKRDELPGIKVIE 1006 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC-CccEEEEcCCchhhcccccchhhhcccCCceeEe
Confidence 34456666654433 456999999999999999988887766555 4699999999999998888887765555888999
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCC--CCCCCccEEEEccchhhhccCcHHHHHHHH-------hhCCC
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQS--LRPDYIRMFVLDEADEMLSRGFKDQIYDIF-------QHLPG 212 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~-------~~~~~ 212 (413)
++|+...+.. . -...+++|+||+++....+++. .....++.+|+||.|.+. .++...+..+. ...+.
T Consensus 1007 ~tgd~~pd~~-~--v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg-~~rgPVle~ivsr~n~~s~~t~~ 1082 (1230)
T KOG0952|consen 1007 LTGDVTPDVK-A--VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLG-EDRGPVLEVIVSRMNYISSQTEE 1082 (1230)
T ss_pred ccCccCCChh-h--eecCceEEcccccccCccccccchhhhccccceeeccccccc-CCCcceEEEEeeccccCccccCc
Confidence 9888765411 1 2346899999999988887543 335668899999999664 33232221111 11122
Q ss_pred CceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEE------EEeCccccHH-HHHHHHHHhcCCCcEEEE
Q 015093 213 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFH------VNVDKEEWKL-DTLCDLYETLAITQSVIF 285 (413)
Q Consensus 213 ~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~l~~~~~~~~~~~~lIf 285 (413)
..+.+++|--+. +..++..+....+. +.. .....+..+.... ..++...... +.+..+....+..+++||
T Consensus 1083 ~vr~~glsta~~-na~dla~wl~~~~~-~nf-~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~lif 1159 (1230)
T KOG0952|consen 1083 PVRYLGLSTALA-NANDLADWLNIKDM-YNF-RPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIF 1159 (1230)
T ss_pred chhhhhHhhhhh-ccHHHHHHhCCCCc-CCC-CcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceEEE
Confidence 345555554432 34444444433332 111 0011111111111 1111111122 333333344466899999
Q ss_pred EcCcccHHHHHHHH----hhCCCeeEeecCCCCHHHHHHHHHHHhcCCCe
Q 015093 286 VNTRRKVDWLTDQM----RSRDHTVSATHGDMDQNSRDIIMREFRSGSSR 331 (413)
Q Consensus 286 ~~~~~~a~~l~~~l----~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 331 (413)
+.++.+...-+..| ....-+..+++.+ ..+-+.++...++.+++
T Consensus 1160 v~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1160 VSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred eecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccchh
Confidence 99987654443333 3333334444433 55666666666665544
No 181
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.63 E-value=1.5e-07 Score=78.43 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=71.7
Q ss_pred CCcHHHHhhhhhhhCCC--cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceE
Q 015093 62 KPSAIQQRGIVPFCKGL--DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKV 139 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~--~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~ 139 (413)
+|++-|.+++..++.++ -.++.|+.|+|||.+. ..+...+... +.++++++||...+....+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~--g~~v~~~apT~~Aa~~L~~~~~---------- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA--GKRVIGLAPTNKAAKELREKTG---------- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT--T--EEEEESSHHHHHHHHHHHT----------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC--CCeEEEECCcHHHHHHHHHhhC----------
Confidence 36788999999996544 4788999999999753 4455444443 4699999999887776544311
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCC----CCCCccEEEEccchhhhccCcHHHHHHHHhhCCC-Cc
Q 015093 140 HACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL----RPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPG-KI 214 (413)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~----~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~-~~ 214 (413)
+-..|..+++........ .....++|||||+-.+ ....+..++...+. +.
T Consensus 68 ---------------------~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv----~~~~~~~ll~~~~~~~~ 122 (196)
T PF13604_consen 68 ---------------------IEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMV----DSRQLARLLRLAKKSGA 122 (196)
T ss_dssp ---------------------S-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-----BHHHHHHHHHHS-T-T-
T ss_pred ---------------------cchhhHHHHHhcCCcccccccccCCcccEEEEeccccc----CHHHHHHHHHHHHhcCC
Confidence 112332222211111100 1344679999999977 34556677777766 56
Q ss_pred eEEEEeee
Q 015093 215 QVGVFSAT 222 (413)
Q Consensus 215 ~~i~lSAT 222 (413)
+++++.=+
T Consensus 123 klilvGD~ 130 (196)
T PF13604_consen 123 KLILVGDP 130 (196)
T ss_dssp EEEEEE-T
T ss_pred EEEEECCc
Confidence 66654443
No 182
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.62 E-value=2.2e-05 Score=71.79 Aligned_cols=74 Identities=15% Similarity=0.067 Sum_probs=46.8
Q ss_pred CCCCCCcHHHHhhhhh----hhCCCcEEEeCCCCCchhHHHHHHHHHhccccc-CceeEEEEcccHHHHHHHHHHHHHh
Q 015093 58 YGFEKPSAIQQRGIVP----FCKGLDVIQQAQSGTGKTATFCSGILQQLDYES-LQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~----~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~-~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
+.++..+|-|.+-... +-.+.+.++.+|+|+|||.+.+..+......-. .-.+.++..-|..-.+....+++.+
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHH
Confidence 4555667777654433 344678999999999999887666654432222 2236677666666555566666544
No 183
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.61 E-value=1.7e-06 Score=86.25 Aligned_cols=67 Identities=13% Similarity=0.105 Sum_probs=58.7
Q ss_pred CCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCC
Q 015093 158 GVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 158 ~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
...|++.||..+..-+..+.+....+..||+||||++........+.++++...+...+.++|+.|.
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 3579999999999999999999999999999999998776666777788888777888999999996
No 184
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.51 E-value=3.5e-06 Score=79.04 Aligned_cols=76 Identities=21% Similarity=0.198 Sum_probs=61.5
Q ss_pred HHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 54 GIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 54 ~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
.+...+.++|..-|..|+++++.+.-.||++|+|+|||.+....++. +.... ..++|+++|+.--++|.++.+.+.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyh-l~~~~-~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYH-LARQH-AGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHH-HHHhc-CCceEEEcccchhHHHHHHHHHhc
Confidence 44456778999999999999999999999999999999876444444 43333 458999999999899998888764
No 185
>PRK10536 hypothetical protein; Provisional
Probab=98.50 E-value=6e-07 Score=76.25 Aligned_cols=147 Identities=15% Similarity=0.074 Sum_probs=84.3
Q ss_pred CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHH-------HHHHHHHH
Q 015093 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQ-------QIEKVMRA 130 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~-------q~~~~~~~ 130 (413)
.++...+..|...+.++.++..+++.||+|+|||+.+...+++.+.... -.++++.-|.....+ ...+.+..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p 133 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD-VDRIIVTRPVLQADEDLGFLPGDIAEKFAP 133 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-eeEEEEeCCCCCchhhhCcCCCCHHHHHHH
Confidence 4556778889999999988888999999999999998887776664433 346666666644211 01111111
Q ss_pred hhcccCceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhh
Q 015093 131 LGDYMGVKVHACVGGTSVREDQRILS-AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQH 209 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~ 209 (413)
+....-.....+.+.. .....+. ....|-+..... ++-.. +. -++||+|||+++ -...+..++.+
T Consensus 134 ~~~pi~D~L~~~~~~~---~~~~~~~~~~~~Iei~~l~y----mRGrt--l~-~~~vIvDEaqn~----~~~~~k~~ltR 199 (262)
T PRK10536 134 YFRPVYDVLVRRLGAS---FMQYCLRPEIGKVEIAPFAY----MRGRT--FE-NAVVILDEAQNV----TAAQMKMFLTR 199 (262)
T ss_pred HHHHHHHHHHHHhChH---HHHHHHHhccCcEEEecHHH----hcCCc--cc-CCEEEEechhcC----CHHHHHHHHhh
Confidence 1110000000000111 1111111 123455555322 22222 23 279999999987 34777788899
Q ss_pred CCCCceEEEE
Q 015093 210 LPGKIQVGVF 219 (413)
Q Consensus 210 ~~~~~~~i~l 219 (413)
+..+.++|++
T Consensus 200 ~g~~sk~v~~ 209 (262)
T PRK10536 200 LGENVTVIVN 209 (262)
T ss_pred cCCCCEEEEe
Confidence 9888887753
No 186
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.37 E-value=2.5e-06 Score=78.33 Aligned_cols=108 Identities=14% Similarity=0.173 Sum_probs=67.7
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcC
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAG 158 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
-++|.|.+|||||+.++..+... .....+.++++++++.+|.....+.+.+... ...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l-~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~----------------------~~~ 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL-QNSEEGKKVLYLCGNHPLRNKLREQLAKKYN----------------------PKL 59 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh-hccccCCceEEEEecchHHHHHHHHHhhhcc----------------------cch
Confidence 37899999999998876555443 2233345899999999998877777665320 001
Q ss_pred CcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC-------cHHHHHHHHhh
Q 015093 159 VHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-------FKDQIYDIFQH 209 (413)
Q Consensus 159 ~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-------~~~~~~~~~~~ 209 (413)
....+..+..+.............+++||+||||++.... ....+..+++.
T Consensus 60 ~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 1233444444443333222344558999999999987621 23555565555
No 187
>PF13245 AAA_19: Part of AAA domain
Probab=98.37 E-value=1.5e-06 Score=59.81 Aligned_cols=52 Identities=33% Similarity=0.413 Sum_probs=38.9
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhccc-ccCceeEEEEcccHHHHHHHHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDY-ESLQCQALVLAPTRELAQQIEKVM 128 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~-~~~~~~~lvl~P~~~l~~q~~~~~ 128 (413)
++-++|.+|+|||||...+..+...+.. ...+.++++++|++..+++..+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 3446679999999998776666665532 112558999999999998877776
No 188
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.36 E-value=2.3e-06 Score=82.91 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=83.2
Q ss_pred CCcHHHHhhhhhhhC----CCcEEEeCCCCCchhHHHHHHHHHhc---c-----------c-------------------
Q 015093 62 KPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQL---D-----------Y------------------- 104 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~----~~~~lv~~~tGsGKT~~~~~~i~~~l---~-----------~------------------- 104 (413)
+||+.|......+++ ..++++..|||+|||++.+-..+.-. . .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 789999877666554 56799999999999987653333211 0 0
Q ss_pred cc------CceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcc-------------------------------
Q 015093 105 ES------LQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTS------------------------------- 147 (413)
Q Consensus 105 ~~------~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 147 (413)
.. ..+++.+-.-|..-..|..+++++..-.. ++.++.....
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~v--kmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f 178 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRV--KMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHF 178 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCCC--ceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccc
Confidence 00 13567888888878888999998764322 2111111000
Q ss_pred -------------------hHH--------------HHHHHhcCCcEEEeChHHHHHHHHcCC--CCCCCccEEEEccch
Q 015093 148 -------------------VRE--------------DQRILSAGVHVVVGTPGRVFDMLRRQS--LRPDYIRMFVLDEAD 192 (413)
Q Consensus 148 -------------------~~~--------------~~~~~~~~~~Iii~T~~~l~~~~~~~~--~~~~~~~~iIiDE~h 192 (413)
+++ ..+.+...++||++.|+.|.+-..+.. .++.+ .+||+||||
T Consensus 179 ~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAH 257 (945)
T KOG1132|consen 179 YKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAH 257 (945)
T ss_pred cccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEeccc
Confidence 000 011123457999999999987766554 45554 899999999
Q ss_pred hhh
Q 015093 193 EML 195 (413)
Q Consensus 193 ~~~ 195 (413)
++.
T Consensus 258 NiE 260 (945)
T KOG1132|consen 258 NIE 260 (945)
T ss_pred cHH
Confidence 864
No 189
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.33 E-value=7e-06 Score=79.61 Aligned_cols=139 Identities=18% Similarity=0.171 Sum_probs=85.7
Q ss_pred HHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc---ccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 65 AIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---ESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 65 ~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~---~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
++|+.++..++.++-.+|.|++|+|||.+.. .++..+.. ...+.+++++.||---+..+.+.+.......+..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~--- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVA-RLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA--- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHH-HHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc---
Confidence 7899999999999999999999999997653 33333322 1112479999999877776666555432211110
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc------CCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCce
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR------QSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQ 215 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~------~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 215 (413)
. .. .....+-..|.++|+..... .......+++||+||+-.+ -...+..+++.++...+
T Consensus 224 ------~-~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv----d~~l~~~ll~al~~~~r 288 (586)
T TIGR01447 224 ------E-AL----IAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV----DLPLMAKLLKALPPNTK 288 (586)
T ss_pred ------h-hh----hhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC----CHHHHHHHHHhcCCCCE
Confidence 0 00 01112335565555433211 0111224789999999966 34566678888888888
Q ss_pred EEEEeee
Q 015093 216 VGVFSAT 222 (413)
Q Consensus 216 ~i~lSAT 222 (413)
+|++.=.
T Consensus 289 lIlvGD~ 295 (586)
T TIGR01447 289 LILLGDK 295 (586)
T ss_pred EEEECCh
Confidence 8865543
No 190
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.31 E-value=6.1e-06 Score=80.21 Aligned_cols=140 Identities=18% Similarity=0.185 Sum_probs=87.2
Q ss_pred cHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc--ccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 64 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY--ESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 64 ~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~--~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.++|+.|+.....++-.+|.|++|+|||.+.. .++..+.. .....++.++.||---+..+.+.+.......+..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~--- 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT--- 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc---
Confidence 48999999999998899999999999997753 33333322 1123478999999887777776665433222110
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC------CCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCce
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ------SLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQ 215 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~------~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 215 (413)
. .. ......-..|.++|+...... ....-.++++|+||+-.+ -...+..+++.+++..+
T Consensus 230 --~-----~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv----d~~lm~~ll~al~~~~r 294 (615)
T PRK10875 230 --D-----EQ----KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV----DLPMMARLIDALPPHAR 294 (615)
T ss_pred --h-----hh----hhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc----cHHHHHHHHHhcccCCE
Confidence 0 00 011112244555544322111 111223689999999965 35666678888888888
Q ss_pred EEEEeee
Q 015093 216 VGVFSAT 222 (413)
Q Consensus 216 ~i~lSAT 222 (413)
+|++.=.
T Consensus 295 lIlvGD~ 301 (615)
T PRK10875 295 VIFLGDR 301 (615)
T ss_pred EEEecch
Confidence 8877654
No 191
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.28 E-value=1.2e-05 Score=80.31 Aligned_cols=126 Identities=20% Similarity=0.184 Sum_probs=78.8
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEE
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVH 140 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
..+.+-|.+|+..+..++-.+|.|++|+|||.+. ..+++.+........++++.||-.-+..+.+. .+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~-------~g~~-- 391 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELGGLLPVGLAAPTGRAAKRLGEV-------TGLT-- 391 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCceEEEEeCchHHHHHHHHh-------cCCc--
Confidence 4799999999999988888999999999999764 44444444332224788899997766533221 1110
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC-----CCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCce
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ-----SLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQ 215 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~-----~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 215 (413)
..|.++++...... .......++||+||++.+. ...+..+++.++.+.+
T Consensus 392 ----------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~~~~~r 445 (720)
T TIGR01448 392 ----------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAALPDHAR 445 (720)
T ss_pred ----------------------cccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHhCCCCCE
Confidence 11222222110000 0011236899999999762 3455677777887888
Q ss_pred EEEEeee
Q 015093 216 VGVFSAT 222 (413)
Q Consensus 216 ~i~lSAT 222 (413)
++++.=+
T Consensus 446 lilvGD~ 452 (720)
T TIGR01448 446 LLLVGDT 452 (720)
T ss_pred EEEECcc
Confidence 8876544
No 192
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.27 E-value=1.3e-05 Score=74.49 Aligned_cols=141 Identities=13% Similarity=0.180 Sum_probs=76.9
Q ss_pred EeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH-hhcccCceEEEEECCcchH----HHHHHHh
Q 015093 82 QQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA-LGDYMGVKVHACVGGTSVR----EDQRILS 156 (413)
Q Consensus 82 v~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~ 156 (413)
..++||||||++....|++...++- ...|+.|......+.+...+.. ....+=.+-....++..+. ...+-..
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgy--r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehn 79 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGY--RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHN 79 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhch--hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccC
Confidence 5789999999998888887765543 4678888887777766554421 1000000000011111100 0011123
Q ss_pred cCCcEEEeChHHHHHHHHcC---CCCCC---Ccc-EEEEccchhhhccC-------------cHHHHHHHHhhCCCCceE
Q 015093 157 AGVHVVVGTPGRVFDMLRRQ---SLRPD---YIR-MFVLDEADEMLSRG-------------FKDQIYDIFQHLPGKIQV 216 (413)
Q Consensus 157 ~~~~Iii~T~~~l~~~~~~~---~~~~~---~~~-~iIiDE~h~~~~~~-------------~~~~~~~~~~~~~~~~~~ 216 (413)
....|+++|.+.|...+.+. ...+. +.. +.+-||+|++-... |...+...++ ..++.-+
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~-~nkd~~~ 158 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALE-QNKDNLL 158 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHh-cCCCcee
Confidence 45689999999998776442 22222 223 46779999974321 2222222222 2234557
Q ss_pred EEEeeeCCh
Q 015093 217 GVFSATMPP 225 (413)
Q Consensus 217 i~lSAT~~~ 225 (413)
+.+|||.+.
T Consensus 159 lef~at~~k 167 (812)
T COG3421 159 LEFSATIPK 167 (812)
T ss_pred ehhhhcCCc
Confidence 888999873
No 193
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.22 E-value=2.7e-05 Score=65.04 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=80.8
Q ss_pred CccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhC---CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCK---GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~---~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
.|+....+.++.=.+... --+|+.|.+....+.+ |++.+.++-+|.|||.+. .|++..+..++. .-+.+++|
T Consensus 4 ~w~p~~~P~wLl~E~e~~--iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg~-~LvrviVp- 78 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIESN--ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADGS-RLVRVIVP- 78 (229)
T ss_pred CCCchhChHHHHHHHHcC--ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCCC-cEEEEEcC-
Confidence 455555666665555432 2689999999988876 467999999999999874 566666555543 36777777
Q ss_pred HHHHHHHHHHHHHhh-cccCceEEEEE--CCcch--H---HHH---HHHhcCCcEEEeChHHHHHHH
Q 015093 118 RELAQQIEKVMRALG-DYMGVKVHACV--GGTSV--R---EDQ---RILSAGVHVVVGTPGRVFDML 173 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~-~~~~~~~~~~~--~~~~~--~---~~~---~~~~~~~~Iii~T~~~l~~~~ 173 (413)
++|..|..+.+.+.. ...+-.+..+- ..... . ... ........|+++||+.+.++.
T Consensus 79 k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~ 145 (229)
T PF12340_consen 79 KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFK 145 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHH
Confidence 578999988886543 22333333222 11111 0 111 111234579999999987653
No 194
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.16 E-value=6.4e-06 Score=76.81 Aligned_cols=64 Identities=25% Similarity=0.274 Sum_probs=51.4
Q ss_pred CCcHHHHhhhhhhhCCCc-EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHH
Q 015093 62 KPSAIQQRGIVPFCKGLD-VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVM 128 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~-~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~ 128 (413)
.+.+-|+.|+......++ .+|+||+|+|||.+....+...+..+ .++||..||..-+....+.+
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHHh
Confidence 577789999988887766 88999999999988766666555544 39999999998887777753
No 195
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=98.14 E-value=1e-05 Score=71.09 Aligned_cols=145 Identities=15% Similarity=0.157 Sum_probs=90.4
Q ss_pred hCCCCCCcHHHHhhhhhhhCCCc--EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcc
Q 015093 57 AYGFEKPSAIQQRGIVPFCKGLD--VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~~~~~~~--~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~ 134 (413)
-+|+......|+-|++.++...- +.+.++.|||||+.++.+.++.....+...+++|.=|+....+.
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~d----------- 291 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGED----------- 291 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccc-----------
Confidence 46777788899999999987643 78899999999999999888887776666788888888765421
Q ss_pred cCceEEEEECCcchH--HHHHHHhcCCcEEE----eChHHHHHHHHcCCCCCCC----------ccEEEEccchhhhccC
Q 015093 135 MGVKVHACVGGTSVR--EDQRILSAGVHVVV----GTPGRVFDMLRRQSLRPDY----------IRMFVLDEADEMLSRG 198 (413)
Q Consensus 135 ~~~~~~~~~~~~~~~--~~~~~~~~~~~Iii----~T~~~l~~~~~~~~~~~~~----------~~~iIiDE~h~~~~~~ 198 (413)
++++-|....+ .|...+.+.-..+. ++.+.+...+....+.... -.+||+|||+.+
T Consensus 292 ----IGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL---- 363 (436)
T COG1875 292 ----IGFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL---- 363 (436)
T ss_pred ----cCcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc----
Confidence 22222211110 01010100000111 1133444444333222111 158999999987
Q ss_pred cHHHHHHHHhhCCCCceEEEEe
Q 015093 199 FKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~lS 220 (413)
-...+..++.+...+.++|++.
T Consensus 364 TpheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 364 TPHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred CHHHHHHHHHhccCCCEEEEcC
Confidence 4567778899999888888644
No 196
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=98.09 E-value=2e-05 Score=71.43 Aligned_cols=122 Identities=23% Similarity=0.143 Sum_probs=77.4
Q ss_pred CcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc-cCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 63 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-SLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 63 ~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
|++-|.+++.. ..+.++|.|+.|||||.+.+.-+...+... -...+++++++|+..+.++.+++..........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~--- 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQE--- 75 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC---
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCccccc---
Confidence 46789999988 677899999999999998877776666554 334589999999999999988888754332110
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC-CCCC-CCccEEEEccch
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ-SLRP-DYIRMFVLDEAD 192 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~-~~~~-~~~~~iIiDE~h 192 (413)
................+.|+|.+++...+.+. .... -.-.+-++|+..
T Consensus 76 ---~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 76 ---SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp ---CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ---ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00000111122234578999999987654321 1111 112456777777
No 197
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=98.03 E-value=2.9e-05 Score=60.75 Aligned_cols=92 Identities=14% Similarity=0.252 Sum_probs=59.3
Q ss_pred HHHHHHHHhhCCC----eeEeecCCCCHHHHHHHHHHHhcCCC---eEEEEeCc--cccCCCCCC--CCEEEEcCCCCC-
Q 015093 292 VDWLTDQMRSRDH----TVSATHGDMDQNSRDIIMREFRSGSS---RVLITTDL--LARGIDVQQ--VSLVINYDLPTQ- 359 (413)
Q Consensus 292 a~~l~~~l~~~~~----~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~--~~~G~d~~~--~~~vi~~~~~~s- 359 (413)
.+.+++.+++.+. ......+. ...+..++++.|++... .||+++.. +.||+|+|+ ++.||+.+.|..
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~-~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~ 82 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGK-DSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPN 82 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECC-CCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCC
Confidence 4556666665432 12223232 22344678888876433 68888876 999999997 678888887631
Q ss_pred ------------------------------hhHHHhhhcccCCCCCcceEEEEec
Q 015093 360 ------------------------------PENYLHRIGRSGRFGRKGVAINFVT 384 (413)
Q Consensus 360 ------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~ 384 (413)
...+.|.+||+-|...+--++++++
T Consensus 83 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 83 PDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1234799999999876654555554
No 198
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=98.03 E-value=4.6e-05 Score=59.51 Aligned_cols=73 Identities=16% Similarity=0.232 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHhcCC-CeEEEEeCccccCCCCCC--CCEEEEcCCCCC-----------------------------
Q 015093 312 DMDQNSRDIIMREFRSGS-SRVLITTDLLARGIDVQQ--VSLVINYDLPTQ----------------------------- 359 (413)
Q Consensus 312 ~~~~~~r~~~~~~f~~~~-~~vli~t~~~~~G~d~~~--~~~vi~~~~~~s----------------------------- 359 (413)
+.+..+..++++.|++.. ..||+++..+.+|+|+|+ ++.||+.+.|..
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLP 109 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHH
Confidence 344446788888898654 379999988999999996 678888876631
Q ss_pred --hhHHHhhhcccCCCCCcceEEEEec
Q 015093 360 --PENYLHRIGRSGRFGRKGVAINFVT 384 (413)
Q Consensus 360 --~~~~~Q~~GR~~R~g~~g~~~~~~~ 384 (413)
...+.|.+||+-|...+--++++++
T Consensus 110 ~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 110 DAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHhCccccCcCceEEEEEEe
Confidence 1235799999999876544444443
No 199
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.96 E-value=3.2e-05 Score=77.98 Aligned_cols=147 Identities=18% Similarity=0.067 Sum_probs=94.9
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhccc---------------ccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDY---------------ESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~---------------~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
|++++..-..|.|||..-+...+....+ -...+..|||||. ++..||.+++.+..... +.+..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 4568999999999998776555433211 1112468999996 88899999999876543 56666
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCC--------------CCCCC------ccEEEEccchhhhccCcHH
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQS--------------LRPDY------IRMFVLDEADEMLSRGFKD 201 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~--------------~~~~~------~~~iIiDE~h~~~~~~~~~ 201 (413)
..|-.........-...+||++|||+.|...+.... ..... +=-|++|||+.+.. ...
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 665333222222223468999999999976653321 11110 11489999997633 456
Q ss_pred HHHHHHhhCCCCceEEEEeeeCChhHH
Q 015093 202 QIYDIFQHLPGKIQVGVFSATMPPEAL 228 (413)
Q Consensus 202 ~~~~~~~~~~~~~~~i~lSAT~~~~~~ 228 (413)
...+...+++ ....-++|+||-..+.
T Consensus 530 ~~a~M~~rL~-~in~W~VTGTPiq~Id 555 (1394)
T KOG0298|consen 530 AAAEMVRRLH-AINRWCVTGTPIQKID 555 (1394)
T ss_pred HHHHHHHHhh-hhceeeecCCchhhhh
Confidence 6666667775 4557889999865433
No 200
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.91 E-value=5.5e-05 Score=58.78 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=13.7
Q ss_pred CCcEEEeCCCCCchhHHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~ 96 (413)
++.++|.||+|+|||...-.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHH
Confidence 45689999999999977643
No 201
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.87 E-value=0.00013 Score=74.55 Aligned_cols=123 Identities=17% Similarity=0.096 Sum_probs=75.1
Q ss_pred CCcHHHHhhhhhhhCCCc-EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEE
Q 015093 62 KPSAIQQRGIVPFCKGLD-VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVH 140 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~-~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
.|++-|.+++..++.+++ ++|.|+.|+|||.+ +-.+...+.. .+.+++.+.||---+..+.+ ..++
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~--~G~~V~~~ApTGkAA~~L~e-------~tGi--- 412 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA--AGYEVRGAALSGIAAENLEG-------GSGI--- 412 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH--cCCeEEEecCcHHHHHHHhh-------ccCc---
Confidence 699999999999998654 78999999999976 3444444433 24589999998665443221 1111
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhC-CCCceEEEE
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHL-PGKIQVGVF 219 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~l 219 (413)
--.|..+|..........+...++|||||+-.+. ...+..++... +.+.++|++
T Consensus 413 ---------------------~a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~~~garvVLV 467 (988)
T PRK13889 413 ---------------------ASRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAADAGAKVVLV 467 (988)
T ss_pred ---------------------chhhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHHHHhhhhCCCEEEEE
Confidence 1123333322121222223446899999999763 33444555533 446777766
Q ss_pred eee
Q 015093 220 SAT 222 (413)
Q Consensus 220 SAT 222 (413)
.=+
T Consensus 468 GD~ 470 (988)
T PRK13889 468 GDP 470 (988)
T ss_pred CCH
Confidence 544
No 202
>PRK04296 thymidine kinase; Provisional
Probab=97.83 E-value=4.3e-05 Score=63.45 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=24.4
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
-.++.||+|+|||..++..+...... +.+++++-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEec
Confidence 36889999999998776555444332 347787766
No 203
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.83 E-value=0.00044 Score=69.59 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=44.7
Q ss_pred CCcHHHHhhhhhhhCC-CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHH
Q 015093 62 KPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQI 124 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~ 124 (413)
.+++-|.+++..+..+ +-++|.|++|+|||... -.+.+.+.. .+.++++++||---+..+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~--~g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEA--AGYRVIGAALSGKAAEGL 412 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHh--CCCeEEEEeCcHHHHHHH
Confidence 6899999999998875 55899999999999764 344444433 245899999986655443
No 204
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.001 Score=61.15 Aligned_cols=123 Identities=13% Similarity=0.085 Sum_probs=66.3
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhccc-ccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHh
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDY-ESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS 156 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~-~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
+.+++.||||+|||.+..-.+...... ...+.++.+++--..... ..+.++.++...++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~a-a~eQL~~~a~~lgvpv~~--------------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIG-AKKQIQTYGDIMGIPVKA--------------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHH-HHHHHHHHhhcCCcceEe---------------
Confidence 458899999999998875444322211 112334444443221111 122355555544544321
Q ss_pred cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC-cHHHHHHHHhhCCCC-ceEEEEeeeCChh
Q 015093 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-FKDQIYDIFQHLPGK-IQVGVFSATMPPE 226 (413)
Q Consensus 157 ~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~~~~~-~~~i~lSAT~~~~ 226 (413)
+.+++.+...+.. ...+++|++|++.+..... ....+.+++...... -.++.+|||...+
T Consensus 239 ------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~ 300 (388)
T PRK12723 239 ------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS 300 (388)
T ss_pred ------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH
Confidence 2234445444433 2347899999999865321 224455555555432 4678899998743
No 205
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.74 E-value=5.9e-05 Score=64.87 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=32.8
Q ss_pred CCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCC
Q 015093 180 PDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 180 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
...++++|+||||.+... -+..+.++....+...++++++.-++
T Consensus 127 ~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 127 CPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCChh
Confidence 444789999999987544 46677788888777777777766553
No 206
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.72 E-value=0.00071 Score=69.80 Aligned_cols=138 Identities=18% Similarity=0.157 Sum_probs=81.0
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCC-CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHH
Q 015093 46 GLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQI 124 (413)
Q Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~ 124 (413)
+.++.........+ ..|++-|.+++..+..+ +-.+|.|+.|+|||.+. -.+.+.+.. .+.+++.+.||-.-+..+
T Consensus 366 ~v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~--~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 366 GVREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA--AGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred CCCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH--cCCeEEEEcCcHHHHHHH
Confidence 34444444433333 37999999999988654 45899999999999764 445444433 245899999986655443
Q ss_pred HHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHH
Q 015093 125 EKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIY 204 (413)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~ 204 (413)
.+. .++. -.|..+|.-........+..-++|||||+..+ -...+.
T Consensus 442 ~e~-------~Gi~------------------------a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv----~~~~m~ 486 (1102)
T PRK13826 442 EKE-------AGIQ------------------------SRTLSSWELRWNQGRDQLDNKTVFVLDEAGMV----ASRQMA 486 (1102)
T ss_pred HHh-------hCCC------------------------eeeHHHHHhhhccCccCCCCCcEEEEECcccC----CHHHHH
Confidence 221 1221 12222221111111223344579999999976 344455
Q ss_pred HHHhhCC-CCceEEEEeee
Q 015093 205 DIFQHLP-GKIQVGVFSAT 222 (413)
Q Consensus 205 ~~~~~~~-~~~~~i~lSAT 222 (413)
.++...+ .+.++|++.=+
T Consensus 487 ~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 487 LFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHhcCCEEEEECCH
Confidence 5665554 46777766544
No 207
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.70 E-value=1.4e-06 Score=83.87 Aligned_cols=74 Identities=19% Similarity=0.276 Sum_probs=57.5
Q ss_pred HHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhc-C--CCeEEEEeCccccC
Q 015093 268 DTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRS-G--SSRVLITTDLLARG 342 (413)
Q Consensus 268 ~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~--~~~vli~t~~~~~G 342 (413)
..|...++.. .+.+++||..-++..+-+...+...+ ....+.|.....+|+..++.|+. + ..-+|.+|.+.+.|
T Consensus 618 ~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 618 TLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 3344444433 45699999999999999999998888 88889999999999999999984 2 34578888876655
No 208
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.68 E-value=0.00058 Score=53.97 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=23.2
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
++.+++.||+|+|||..+. .+...+... +..++++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~-~i~~~~~~~--~~~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLAR-AIANELFRP--GAPFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHhhcC--CCCeEEEehh
Confidence 5679999999999997543 333333211 2345555443
No 209
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.63 E-value=0.0012 Score=59.78 Aligned_cols=131 Identities=18% Similarity=0.205 Sum_probs=79.4
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS 156 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
++.+.++||||.|||.+..-.+.......+.....+|.+.|--.. .+++++.++.-+++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~----------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIG--AVEQLKTYADIMGVPL----------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhh--HHHHHHHHHHHhCCce-----------------
Confidence 556889999999999876544443331223233556666654332 3556777766555543
Q ss_pred cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhh-hccCcHHHHHHHHhhCCCCceEEEEeeeCCh-hHHHHHHHh
Q 015093 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEM-LSRGFKDQIYDIFQHLPGKIQVGVFSATMPP-EALEITRKF 234 (413)
Q Consensus 157 ~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~-~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~-~~~~~~~~~ 234 (413)
.++-+|..|...+.. +.++++|.+|=+-+- .+......+..++....+-.-.+.+|||... ++.+....+
T Consensus 264 ----~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f 335 (407)
T COG1419 264 ----EVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQF 335 (407)
T ss_pred ----EEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHh
Confidence 345566666555543 344689999977753 3444556666666666555557789999864 344444444
No 210
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.61 E-value=0.00016 Score=60.09 Aligned_cols=131 Identities=16% Similarity=0.175 Sum_probs=70.5
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcC
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAG 158 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
-++++||||+|||.+..-.+.....+ +.++.+++--... ....++++.++...++.+.......+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R-~ga~eQL~~~a~~l~vp~~~~~~~~~----------- 67 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYR-IGAVEQLKTYAEILGVPFYVARTESD----------- 67 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSS-THHHHHHHHHHHHHTEEEEESSTTSC-----------
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCC-ccHHHHHHHHHHHhccccchhhcchh-----------
Confidence 36889999999998875544443323 3355555543222 22345566666555655443221111
Q ss_pred CcEEEeChHH-HHHHHHcCCCCCCCccEEEEccchhhh-ccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHH
Q 015093 159 VHVVVGTPGR-VFDMLRRQSLRPDYIRMFVLDEADEML-SRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRK 233 (413)
Q Consensus 159 ~~Iii~T~~~-l~~~~~~~~~~~~~~~~iIiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~ 233 (413)
|.. +.+.++. ...+++++|++|-+.+.. +......+.+++....+..-++.+|||...........
T Consensus 68 -------~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~ 135 (196)
T PF00448_consen 68 -------PAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALA 135 (196)
T ss_dssp -------HHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHH
T ss_pred -------hHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHH
Confidence 111 1122221 011236899999987643 22334566666666666667888999997655444433
No 211
>PRK06526 transposase; Provisional
Probab=97.59 E-value=0.00075 Score=58.58 Aligned_cols=40 Identities=18% Similarity=0.036 Sum_probs=25.8
Q ss_pred hhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEE
Q 015093 72 VPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVL 114 (413)
Q Consensus 72 ~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl 114 (413)
+.+..+.++++.||+|+|||..+.....+.... +.+++++
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~---g~~v~f~ 132 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQA---GHRVLFA 132 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHHHC---CCchhhh
Confidence 334456789999999999998765444433322 3355554
No 212
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.58 E-value=0.0002 Score=70.62 Aligned_cols=67 Identities=19% Similarity=0.159 Sum_probs=53.3
Q ss_pred CCCcHHHHhhhhhhhCC-CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH
Q 015093 61 EKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
+.+.+.|..|+..++.. ...+|.||+|+|||.+....+.+.+.. +.++++++||..-+.+..+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~---g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR---GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEEcCcHHHHHHHHHHHHh
Confidence 35789999999998876 568999999999998765544444332 34899999999988888888765
No 213
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.56 E-value=0.00028 Score=55.37 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=26.5
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELA 121 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~ 121 (413)
++.+++.||+|+|||..+...+ ..+.... ..++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~-~~~~~~~--~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALA-RELGPPG--GGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHH-hccCCCC--CCEEEECCEEccc
Confidence 4668999999999997764333 2322221 2467777765543
No 214
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.00058 Score=61.66 Aligned_cols=141 Identities=10% Similarity=-0.024 Sum_probs=73.6
Q ss_pred CCcHHHHhhhhhhhCCC----cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 62 KPSAIQQRGIVPFCKGL----DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~----~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.++|||...+..+...+ -.++.||.|.|||..+...+...++....+.. -|. ....++.+.....-
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~---~Cg-------~C~sC~~~~~g~HP 72 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGG---ACG-------SCKGCQLLRAGSHP 72 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCC-------CCHHHHHHhcCCCC
Confidence 35889999998887653 27899999999998876655555443321111 111 11223333222221
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEE
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVG 217 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i 217 (413)
.+..+..+.. +..|-|-....+.+.+...+. ....+++||||+|.+.. .....+.+++..-|.+..++
T Consensus 73 D~~~i~~~~~----------~~~i~id~iR~l~~~~~~~~~-~~~~kv~iI~~a~~m~~-~aaNaLLK~LEEPp~~~~fi 140 (328)
T PRK05707 73 DNFVLEPEEA----------DKTIKVDQVRELVSFVVQTAQ-LGGRKVVLIEPAEAMNR-NAANALLKSLEEPSGDTVLL 140 (328)
T ss_pred CEEEEeccCC----------CCCCCHHHHHHHHHHHhhccc-cCCCeEEEECChhhCCH-HHHHHHHHHHhCCCCCeEEE
Confidence 2222221100 001111111222222222222 23468999999998743 34566777777776666666
Q ss_pred EEeeeCC
Q 015093 218 VFSATMP 224 (413)
Q Consensus 218 ~lSAT~~ 224 (413)
++|..+.
T Consensus 141 L~t~~~~ 147 (328)
T PRK05707 141 LISHQPS 147 (328)
T ss_pred EEECChh
Confidence 5555443
No 215
>PRK08181 transposase; Validated
Probab=97.49 E-value=0.0021 Score=56.22 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=62.8
Q ss_pred CcHHHHhhhh----hhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCce
Q 015093 63 PSAIQQRGIV----PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVK 138 (413)
Q Consensus 63 ~~~~Q~~~~~----~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~ 138 (413)
+...|..++. .+..++++++.||+|+|||..+.....+.... +..++++. ...|..+.......
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~---g~~v~f~~-~~~L~~~l~~a~~~-------- 155 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN---GWRVLFTR-TTDLVQKLQVARRE-------- 155 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc---CCceeeee-HHHHHHHHHHHHhC--------
Confidence 3445555553 23457789999999999997654333333222 33555554 34555443211000
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC-cHHHHHHHHhhCCCCceEE
Q 015093 139 VHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-FKDQIYDIFQHLPGKIQVG 217 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i 217 (413)
.+.+.+...+ ...+++|+||.+...... ....+..++.....+.+++
T Consensus 156 -------------------------~~~~~~l~~l-------~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~I 203 (269)
T PRK08181 156 -------------------------LQLESAIAKL-------DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSIL 203 (269)
T ss_pred -------------------------CcHHHHHHHH-------hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 1111222222 236899999999754322 2345666666554445566
Q ss_pred EEeeeCCh
Q 015093 218 VFSATMPP 225 (413)
Q Consensus 218 ~lSAT~~~ 225 (413)
..|-.++.
T Consensus 204 iTSN~~~~ 211 (269)
T PRK08181 204 ITANQPFG 211 (269)
T ss_pred EEcCCCHH
Confidence 55555543
No 216
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.41 E-value=0.00083 Score=66.47 Aligned_cols=125 Identities=17% Similarity=0.161 Sum_probs=74.1
Q ss_pred CCCcHHHHhhhhhhhCCCc-EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceE
Q 015093 61 EKPSAIQQRGIVPFCKGLD-VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKV 139 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~-~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~ 139 (413)
..|+.-|++|+...+.-++ .+|.|=+|+|||.+....+.-.+.. +.++|..+=|..-+....-.++.+ ++.+
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~---gkkVLLtsyThsAVDNILiKL~~~----~i~~ 740 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVAL---GKKVLLTSYTHSAVDNILIKLKGF----GIYI 740 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHc---CCeEEEEehhhHHHHHHHHHHhcc----Ccce
Confidence 3688899999988877666 8999999999997765444333222 337888777766555555444443 3332
Q ss_pred EEEECCcchHH-----------------HHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc
Q 015093 140 HACVGGTSVRE-----------------DQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS 196 (413)
Q Consensus 140 ~~~~~~~~~~~-----------------~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 196 (413)
..+..+..... ..+.+-+...|+.+|=-.+.+.+ +....+++.|+|||-.+.-
T Consensus 741 lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 741 LRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred eecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhccccCEEEEcccccccc
Confidence 22222211111 11122234567766633332222 2334489999999998654
No 217
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.40 E-value=0.0021 Score=58.62 Aligned_cols=171 Identities=18% Similarity=0.186 Sum_probs=83.6
Q ss_pred ccccCccCCCCCHHHHHHHHhC-C----CC---CCcHHHHhhhhh-----------hhCCCcEEEeCCCCCchhHHHHHH
Q 015093 37 EVYDSFDSMGLKENLLRGIYAY-G----FE---KPSAIQQRGIVP-----------FCKGLDVIQQAQSGTGKTATFCSG 97 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~-~----~~---~~~~~Q~~~~~~-----------~~~~~~~lv~~~tGsGKT~~~~~~ 97 (413)
..+..+...++++.+.+.+-.. . .. ..+.+....+.. +.+++.+++.||||+|||.+....
T Consensus 78 ~l~~~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakL 157 (374)
T PRK14722 78 ALTKYLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKL 157 (374)
T ss_pred HHHHHHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHH
Confidence 3346667778888777666331 1 11 112333333322 122556899999999999887554
Q ss_pred HHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCC
Q 015093 98 ILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQS 177 (413)
Q Consensus 98 i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~ 177 (413)
+........ ..++.+++.- ....--.+.++.++...++.+.. +.++..+...+..
T Consensus 158 A~~~~~~~G-~~~V~lit~D-~~R~ga~EqL~~~a~~~gv~~~~---------------------~~~~~~l~~~l~~-- 212 (374)
T PRK14722 158 AARCVMRFG-ASKVALLTTD-SYRIGGHEQLRIFGKILGVPVHA---------------------VKDGGDLQLALAE-- 212 (374)
T ss_pred HHHHHHhcC-CCeEEEEecc-cccccHHHHHHHHHHHcCCceEe---------------------cCCcccHHHHHHH--
Confidence 433322211 1244444432 22112234455555444544332 2233333333322
Q ss_pred CCCCCccEEEEccchhhhccC-cHHHHHHHHhhCCCCceEEEEeeeCChhHH-HHHHHh
Q 015093 178 LRPDYIRMFVLDEADEMLSRG-FKDQIYDIFQHLPGKIQVGVFSATMPPEAL-EITRKF 234 (413)
Q Consensus 178 ~~~~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~-~~~~~~ 234 (413)
+.+.++|+||++-...... ....+..+.........++.+|||...... +....|
T Consensus 213 --l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 213 --LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred --hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 2235899999997543222 122222222222223457889999865443 333443
No 218
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.40 E-value=0.003 Score=57.47 Aligned_cols=128 Identities=16% Similarity=0.194 Sum_probs=67.7
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc-cH--HHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP-TR--ELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRI 154 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P-~~--~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (413)
+.+.+.||+|+|||......+... . .. +.++.++.. +. +...| ++.++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L-~-~~-GkkVglI~aDt~RiaAvEQ----Lk~yae~lgipv--------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQF-H-GK-KKTVGFITTDHSRIGTVQQ----LQDYVKTIGFEV--------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH-H-Hc-CCcEEEEecCCcchHHHHH----HHHHhhhcCCcE---------------
Confidence 458899999999998765544433 2 22 234544443 22 23334 333333222221
Q ss_pred HhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc-CcHHHHHHHHhhCCCCceEEEEeeeCCh-hHHHHHH
Q 015093 155 LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR-GFKDQIYDIFQHLPGKIQVGVFSATMPP-EALEITR 232 (413)
Q Consensus 155 ~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~lSAT~~~-~~~~~~~ 232 (413)
+.+.++..+...+..... ..++++|++|-+-+.... .....+.+++....+...++.+|||... .......
T Consensus 300 ------~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~ 372 (436)
T PRK11889 300 ------IAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 372 (436)
T ss_pred ------EecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHH
Confidence 223466666655543211 113689999988765422 1233444555444444446669988654 4455555
Q ss_pred Hh
Q 015093 233 KF 234 (413)
Q Consensus 233 ~~ 234 (413)
.+
T Consensus 373 ~F 374 (436)
T PRK11889 373 NF 374 (436)
T ss_pred Hh
Confidence 44
No 219
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.37 E-value=0.00076 Score=54.33 Aligned_cols=127 Identities=9% Similarity=0.066 Sum_probs=65.6
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcC
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAG 158 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
..|+.||.|+||+..+...+...+....... .|..-.-+. .+.....-.+..+..... .
T Consensus 21 a~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~----~c~~c~~c~-------~~~~~~~~d~~~~~~~~~----------~ 79 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLALAFARALLCSNPNED----PCGECRSCR-------RIEEGNHPDFIIIKPDKK----------K 79 (162)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-TT-CTT------SSSHHHH-------HHHTT-CTTEEEEETTTS----------S
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCCHHHH-------HHHhccCcceEEEecccc----------c
Confidence 3799999999999887666665555444322 222222222 221111222333332211 0
Q ss_pred CcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHH
Q 015093 159 VHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEAL 228 (413)
Q Consensus 159 ~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~ 228 (413)
..|-+-....+...+...... ...+++|+||||.+.. .....+.+.+..-+.+..++++|..+..-..
T Consensus 80 ~~i~i~~ir~i~~~~~~~~~~-~~~KviiI~~ad~l~~-~a~NaLLK~LEepp~~~~fiL~t~~~~~il~ 147 (162)
T PF13177_consen 80 KSIKIDQIREIIEFLSLSPSE-GKYKVIIIDEADKLTE-EAQNALLKTLEEPPENTYFILITNNPSKILP 147 (162)
T ss_dssp SSBSHHHHHHHHHHCTSS-TT-SSSEEEEEETGGGS-H-HHHHHHHHHHHSTTTTEEEEEEES-GGGS-H
T ss_pred chhhHHHHHHHHHHHHHHHhc-CCceEEEeehHhhhhH-HHHHHHHHHhcCCCCCEEEEEEECChHHChH
Confidence 012121112222222222222 4579999999998743 3578888899999888888877766654333
No 220
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.35 E-value=0.00095 Score=66.68 Aligned_cols=70 Identities=14% Similarity=0.082 Sum_probs=55.5
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc-ccCceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-ESLQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~-~~~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
.|++-|.+++.+. .+.++|.|++|||||.+...-+...+.. +-...++|+++-|+..+.++.+++.+...
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 4788999999763 5678999999999999987777666643 22344899999999999999888877643
No 221
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.26 E-value=0.0009 Score=57.99 Aligned_cols=57 Identities=23% Similarity=0.380 Sum_probs=48.9
Q ss_pred HHHHHHhcCCCeEEEEeCccccCCCCCC--------CCEEEEcCCCCChhHHHhhhcccCCCCCc
Q 015093 320 IIMREFRSGSSRVLITTDLLARGIDVQQ--------VSLVINYDLPTQPENYLHRIGRSGRFGRK 376 (413)
Q Consensus 320 ~~~~~f~~~~~~vli~t~~~~~G~d~~~--------~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~ 376 (413)
.-.+.|.+|+..|+|.+.+.++|+.+.. -++-|...+|||....+|..||++|.|+.
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~ 116 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQV 116 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccc
Confidence 3457899999999999999999999863 34456788999999999999999999873
No 222
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.25 E-value=0.0031 Score=56.53 Aligned_cols=143 Identities=14% Similarity=0.088 Sum_probs=77.7
Q ss_pred CCCcHHHHhhhhhhhC----CC---cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 61 EKPSAIQQRGIVPFCK----GL---DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~----~~---~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
..+||+|..++..+.. ++ -.++.||.|.||+..+...+...++....... -|+. ++.+..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~---~c~~----------c~~~~~ 69 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAA---AQRT----------RQLIAA 69 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCC---cchH----------HHHHhc
Confidence 4688999988887653 33 38899999999998876655555543321111 1111 111211
Q ss_pred ccCceEEEE--ECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCC
Q 015093 134 YMGVKVHAC--VGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLP 211 (413)
Q Consensus 134 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 211 (413)
...-.+..+ ..+.. .. .....|.|-....+.+.+...+.. ...+++|||+||.+. ......+.+++..-+
T Consensus 70 g~HPD~~~i~~~p~~~--~~----k~~~~I~idqIR~l~~~~~~~p~~-g~~kV~iI~~ae~m~-~~AaNaLLKtLEEPp 141 (319)
T PRK08769 70 GTHPDLQLVSFIPNRT--GD----KLRTEIVIEQVREISQKLALTPQY-GIAQVVIVDPADAIN-RAACNALLKTLEEPS 141 (319)
T ss_pred CCCCCEEEEecCCCcc--cc----cccccccHHHHHHHHHHHhhCccc-CCcEEEEeccHhhhC-HHHHHHHHHHhhCCC
Confidence 111122222 11110 00 001123333333333333333322 346899999999873 334677778888888
Q ss_pred CCceEEEEeeeCC
Q 015093 212 GKIQVGVFSATMP 224 (413)
Q Consensus 212 ~~~~~i~lSAT~~ 224 (413)
.+..++++|..+.
T Consensus 142 ~~~~fiL~~~~~~ 154 (319)
T PRK08769 142 PGRYLWLISAQPA 154 (319)
T ss_pred CCCeEEEEECChh
Confidence 7877777766554
No 223
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.18 E-value=0.007 Score=56.77 Aligned_cols=131 Identities=18% Similarity=0.157 Sum_probs=65.6
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS 156 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
++.+++.+|||+|||.+....+........ +.++.++.--.... ...+.++.++...++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~-g~~V~li~~D~~r~-~a~eqL~~~a~~~~vp~----------------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG-KKKVALITLDTYRI-GAVEQLKTYAKIMGIPV----------------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEECCccHH-HHHHHHHHHHHHhCCce-----------------
Confidence 456889999999999876544433320112 23454444322111 11233444433333322
Q ss_pred cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc-CcHHHHHHHHhhC-CCCceEEEEeeeCChhH-HHHHHH
Q 015093 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR-GFKDQIYDIFQHL-PGKIQVGVFSATMPPEA-LEITRK 233 (413)
Q Consensus 157 ~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~-~~~~~~i~lSAT~~~~~-~~~~~~ 233 (413)
..+.+++.+...+... ..+++|+||.+-..... .....+..++... ......+.+|||..... ......
T Consensus 282 ----~~~~~~~~l~~~l~~~----~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~ 353 (424)
T PRK05703 282 ----EVVYDPKELAKALEQL----RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKH 353 (424)
T ss_pred ----EccCCHHhHHHHHHHh----CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHH
Confidence 1223444455444432 24689999998754321 1223455555522 22344777999987543 333343
Q ss_pred h
Q 015093 234 F 234 (413)
Q Consensus 234 ~ 234 (413)
+
T Consensus 354 f 354 (424)
T PRK05703 354 F 354 (424)
T ss_pred h
Confidence 3
No 224
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.18 E-value=0.0019 Score=60.61 Aligned_cols=21 Identities=24% Similarity=0.075 Sum_probs=16.7
Q ss_pred EEEeCCCCCchhHHHHHHHHH
Q 015093 80 VIQQAQSGTGKTATFCSGILQ 100 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~ 100 (413)
.++.||.|+|||.++...+..
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 699999999999887554433
No 225
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.17 E-value=0.0018 Score=65.52 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=56.6
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc-ccCceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-ESLQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~-~~~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
..|++-|.+++.+- .+.++|.|.+|||||.+...-+...+.. +-...++|+++-|+..+.++.+++.++..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 35889999999763 5679999999999999887766665543 22345899999999999999999988754
No 226
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=97.17 E-value=0.0005 Score=55.50 Aligned_cols=125 Identities=18% Similarity=0.215 Sum_probs=53.2
Q ss_pred EEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCc
Q 015093 81 IQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVH 160 (413)
Q Consensus 81 lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (413)
++.|+-|-|||.+.-+++.. +.... ..+++|..|+.+-++...+.+.+-....+.+..... ..............
T Consensus 1 VltA~RGRGKSa~lGl~~a~-l~~~~-~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAA-LIQKG-KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKK---RIGQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCC-SSS------EEEE-SS--S-HHHHHCC-----------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHH-HHHhc-CceEEEecCCHHHHHHHHHHHHhhcccccccccccc---ccccccccccccce
Confidence 57899999999665333322 22222 248999999998877777666554433333220000 00000111122456
Q ss_pred EEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCCh
Q 015093 161 VVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPP 225 (413)
Q Consensus 161 Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~ 225 (413)
|-+..|+.+... ....+++|||||=.+ ....+..++...+ .+.+|.|...
T Consensus 76 i~f~~Pd~l~~~-------~~~~DlliVDEAAaI----p~p~L~~ll~~~~----~vv~stTi~G 125 (177)
T PF05127_consen 76 IEFVAPDELLAE-------KPQADLLIVDEAAAI----PLPLLKQLLRRFP----RVVFSTTIHG 125 (177)
T ss_dssp --B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCSS----EEEEEEEBSS
T ss_pred EEEECCHHHHhC-------cCCCCEEEEechhcC----CHHHHHHHHhhCC----EEEEEeeccc
Confidence 777777766422 122589999999876 3444555544443 5678888753
No 227
>PRK14974 cell division protein FtsY; Provisional
Probab=97.13 E-value=0.014 Score=52.80 Aligned_cols=129 Identities=22% Similarity=0.292 Sum_probs=68.5
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc---HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT---RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL 155 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~---~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (413)
-+++.|++|+|||.+....+ ..+.. . +.+++++... ..-..|+...... .++.+.....+.
T Consensus 142 vi~~~G~~GvGKTTtiakLA-~~l~~-~-g~~V~li~~Dt~R~~a~eqL~~~a~~----lgv~v~~~~~g~--------- 205 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLA-YYLKK-N-GFSVVIAAGDTFRAGAIEQLEEHAER----LGVKVIKHKYGA--------- 205 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHH-HHHHH-c-CCeEEEecCCcCcHHHHHHHHHHHHH----cCCceecccCCC---------
Confidence 37889999999998654333 23322 2 3356555443 2334444333333 344332111111
Q ss_pred hcCCcEEEeChHH-HHHHHHcCCCCCCCccEEEEccchhhhc-cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHH
Q 015093 156 SAGVHVVVGTPGR-VFDMLRRQSLRPDYIRMFVLDEADEMLS-RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRK 233 (413)
Q Consensus 156 ~~~~~Iii~T~~~-l~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~ 233 (413)
.|.. +.+.+... .....++|++|.++++.. ......+.++.+...+...++.++||...+.....+.
T Consensus 206 ---------dp~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~ 274 (336)
T PRK14974 206 ---------DPAAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE 274 (336)
T ss_pred ---------CHHHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH
Confidence 1111 11111110 012357999999998752 2344556666666666677888999887665555554
Q ss_pred h
Q 015093 234 F 234 (413)
Q Consensus 234 ~ 234 (413)
+
T Consensus 275 f 275 (336)
T PRK14974 275 F 275 (336)
T ss_pred H
Confidence 4
No 228
>PHA02533 17 large terminase protein; Provisional
Probab=97.12 E-value=0.0029 Score=60.96 Aligned_cols=71 Identities=13% Similarity=0.040 Sum_probs=53.8
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
.|+|+|...+..+..++-.++..+-..|||......++...... .+..++++.|+..-+....+.++.+..
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~-~~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN-KDKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 68999999998876667778999999999988764443333222 245899999999888888877776544
No 229
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.10 E-value=0.0034 Score=61.83 Aligned_cols=38 Identities=8% Similarity=0.275 Sum_probs=26.2
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
.++++||||+|.+... -...+.+++...+....+|+.|
T Consensus 119 r~KVIIIDEah~LT~~-A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 119 RFKVYMIDEVHMLTNH-AFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CceEEEEeChhhCCHH-HHHHHHHHHHhcCCCeEEEEEE
Confidence 4689999999987543 3455666777776666656444
No 230
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.10 E-value=0.0041 Score=62.99 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=28.5
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..++++||||+|.+.. .-.+.+.+++...+....+|+++
T Consensus 119 ~~~KV~IIDEad~lt~-~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTP-QGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCH-HHHHHHHHHHhCCCCCeEEEEEe
Confidence 3478999999998853 34566777788777777666655
No 231
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.10 E-value=0.0023 Score=64.74 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=55.8
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc-ccCceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-ESLQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~-~~~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
.|++-|.+++.+. .+.++|.|++|||||.+...-+...+.. +-...++|+++-|+..+.++.+++.++..
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 5899999999753 4679999999999999887666655542 22345899999999999999999888654
No 232
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=97.09 E-value=0.0019 Score=52.28 Aligned_cols=104 Identities=18% Similarity=0.204 Sum_probs=61.0
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcC
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAG 158 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
-.++.+|++||||.-.+..+...-.. +.++++..|...-. + +......+.|.. .
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~~---g~~v~vfkp~iD~R---------~----~~~~V~Sr~G~~----------~ 59 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKEA---GMKVLVFKPAIDTR---------Y----GVGKVSSRIGLS----------S 59 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHHHc---CCeEEEEecccccc---------c----ccceeeeccCCc----------c
Confidence 36899999999998765444433222 44889988865421 1 111112222221 2
Q ss_pred CcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhC
Q 015093 159 VHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHL 210 (413)
Q Consensus 159 ~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 210 (413)
..+.|-+...+...+........ .+.|.+|||+.+ +...-..+.++...+
T Consensus 60 ~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~-~~~~v~~l~~lad~l 109 (201)
T COG1435 60 EAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFF-DEELVYVLNELADRL 109 (201)
T ss_pred cceecCChHHHHHHHHhcccCCC-cCEEEEehhHhC-CHHHHHHHHHHHhhc
Confidence 35667677777777766543333 689999999954 333344455555543
No 233
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=97.06 E-value=0.0031 Score=63.48 Aligned_cols=69 Identities=14% Similarity=0.070 Sum_probs=54.7
Q ss_pred CcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc-ccCceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 63 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-ESLQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 63 ~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~-~~~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
|++-|.+++.+ ..+.++|.|++|||||.+.+.-+...+.. .....++++++.|+..+.++.+++.+...
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 67889999875 35679999999999999987777766643 22345799999999999999888877543
No 234
>PRK05642 DNA replication initiation factor; Validated
Probab=97.05 E-value=0.0023 Score=55.05 Aligned_cols=43 Identities=16% Similarity=0.436 Sum_probs=27.6
Q ss_pred ccEEEEccchhhhcc-CcHHHHHHHHhhCCCCceEEEEeeeCCh
Q 015093 183 IRMFVLDEADEMLSR-GFKDQIYDIFQHLPGKIQVGVFSATMPP 225 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~lSAT~~~ 225 (413)
.+++|+|++|.+... .+...+..+++.+..+-+.+++|++.++
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 578999999976433 3445577777666543345566666543
No 235
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.04 E-value=0.0065 Score=53.76 Aligned_cols=78 Identities=14% Similarity=0.088 Sum_probs=44.8
Q ss_pred HHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHH
Q 015093 50 NLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMR 129 (413)
Q Consensus 50 ~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~ 129 (413)
++.++|...+.++..+--.+.+.-+..|..+++.|++|+|||...+..+...+.. .+.+++++.-- .-..+..+.+.
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--~g~~vl~iS~E-~~~~~~~~r~~ 79 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ--HGVRVGTISLE-EPVVRTARRLL 79 (271)
T ss_pred hhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--cCceEEEEEcc-cCHHHHHHHHH
Confidence 4555566444444333333333445567779999999999998766555444322 13477777642 23444544443
Q ss_pred H
Q 015093 130 A 130 (413)
Q Consensus 130 ~ 130 (413)
.
T Consensus 80 ~ 80 (271)
T cd01122 80 G 80 (271)
T ss_pred H
Confidence 3
No 236
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.04 E-value=0.049 Score=60.91 Aligned_cols=135 Identities=13% Similarity=0.134 Sum_probs=80.3
Q ss_pred CCcHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceE
Q 015093 62 KPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKV 139 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~ 139 (413)
.|.+-|.+++..++.+ +-.+|.++.|+|||.+. -.+.+.+.. .+.+++.+.|+-.-+..+.+......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~--~G~~V~~lAPTgrAA~~L~e~~g~~A------- 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASE--QGYEIQIITAGSLSAQELRQKIPRLA------- 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHhcchh-------
Confidence 6888999999998876 44899999999999663 444444433 24589999999876655554322110
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhC-CCCceEEE
Q 015093 140 HACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHL-PGKIQVGV 218 (413)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~ 218 (413)
.....+...... .....|...|. .....+..-++|||||+-.+ -...+..++... +.+.++|+
T Consensus 499 ------~Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl----~~~~~~~Ll~~a~~~garvVl 562 (1960)
T TIGR02760 499 ------STFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKL----SNNELLKLIDKAEQHNSKLIL 562 (1960)
T ss_pred ------hhHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCC----CHHHHHHHHHHHhhcCCEEEE
Confidence 011111111111 11122333333 12223344689999999976 344455666544 45778887
Q ss_pred Eeee
Q 015093 219 FSAT 222 (413)
Q Consensus 219 lSAT 222 (413)
+.=+
T Consensus 563 vGD~ 566 (1960)
T TIGR02760 563 LNDS 566 (1960)
T ss_pred EcCh
Confidence 7655
No 237
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.01 E-value=0.0045 Score=59.02 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=27.7
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQI 124 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~ 124 (413)
+.+++.||+|+|||..+ .++...+.....+.+++++.. ..+..+.
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~~~~~v~yi~~-~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKNPNAKVVYVTS-EKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHH
Confidence 45899999999999765 344444444333446666644 4444443
No 238
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.01 E-value=0.0029 Score=62.92 Aligned_cols=72 Identities=22% Similarity=0.176 Sum_probs=54.7
Q ss_pred CCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc-cCceeEEEEcccHHHHHHHHHHHHHhh
Q 015093 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-SLQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-~~~~~~lvl~P~~~l~~q~~~~~~~~~ 132 (413)
.-..|++-|.+++..- ..+++|.|..|||||.+...-+...+... ....++++++.++..+..+.+++....
T Consensus 193 e~~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 193 ESSPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred cCCCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 3357999999999643 35689999999999998766555444332 234589999999999999988887644
No 239
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.99 E-value=0.0031 Score=56.73 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=25.2
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEK 126 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~ 126 (413)
.+.|+.||+|+|||..+-+.+ +..+..+.-+..+.+=+.+..+
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA------~~~~~~f~~~sAv~~gvkdlr~ 91 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIA------GTTNAAFEALSAVTSGVKDLRE 91 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHH------HhhCCceEEeccccccHHHHHH
Confidence 358999999999997763222 2223345555555444444333
No 240
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.98 E-value=0.0065 Score=65.97 Aligned_cols=62 Identities=21% Similarity=0.257 Sum_probs=45.0
Q ss_pred CCCcHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhccc--ccCceeEEEEcccHHHHHH
Q 015093 61 EKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDY--ESLQCQALVLAPTRELAQQ 123 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~~--~~~~~~~lvl~P~~~l~~q 123 (413)
..|++-|.+++..++.+ +-++|.|..|+|||... -.+...+.. ...+.+++.+.||-.-+..
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~ 1031 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGE 1031 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHH
Confidence 36899999999999885 45899999999999764 344443321 2234578889998765543
No 241
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.94 E-value=0.0054 Score=55.10 Aligned_cols=139 Identities=8% Similarity=-0.020 Sum_probs=71.5
Q ss_pred CcHHHHhhhhhhh----CCC---cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhccc
Q 015093 63 PSAIQQRGIVPFC----KGL---DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM 135 (413)
Q Consensus 63 ~~~~Q~~~~~~~~----~~~---~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~ 135 (413)
++|||...+..+. +++ -.++.||.|.||+..+...+...++........ |. ....++.+....
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~---Cg-------~C~sC~~~~~g~ 72 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQP---CG-------QCHSCHLFQAGN 72 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCC---CC-------CCHHHHHHhcCC
Confidence 3566666665544 343 377999999999988766555555433211111 11 112233333322
Q ss_pred CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCce
Q 015093 136 GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQ 215 (413)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 215 (413)
.-.+..+.+.. +..|-|-....+.+.+...+. ....+++|+|+||.+... ....+.+++..-|....
T Consensus 73 HPD~~~i~p~~-----------~~~I~id~iR~l~~~~~~~~~-~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~ 139 (325)
T PRK06871 73 HPDFHILEPID-----------NKDIGVDQVREINEKVSQHAQ-QGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTY 139 (325)
T ss_pred CCCEEEEcccc-----------CCCCCHHHHHHHHHHHhhccc-cCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeE
Confidence 22222222110 011222222222222322222 234689999999988433 46777778888777776
Q ss_pred EEEEeeeCC
Q 015093 216 VGVFSATMP 224 (413)
Q Consensus 216 ~i~lSAT~~ 224 (413)
++++|..+.
T Consensus 140 fiL~t~~~~ 148 (325)
T PRK06871 140 FLLQADLSA 148 (325)
T ss_pred EEEEECChH
Confidence 666555543
No 242
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.94 E-value=0.004 Score=66.59 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=78.3
Q ss_pred CcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEE
Q 015093 63 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHAC 142 (413)
Q Consensus 63 ~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 142 (413)
+++-|.+++.. .+++++|.|..|||||.+..--++..+..+..-.+++++|=|++.+.++.+++.+.....-.
T Consensus 2 ~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~----- 74 (1232)
T TIGR02785 2 WTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQ----- 74 (1232)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHh-----
Confidence 57889999974 68889999999999999887766666654433347999999999999988888765432100
Q ss_pred ECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCC-C--CCCCccEEEEccchh
Q 015093 143 VGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQS-L--RPDYIRMFVLDEADE 193 (413)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~-~--~~~~~~~iIiDE~h~ 193 (413)
.........+.+..-...-|+|.++|...+.+.. . .++ ..+=|.||...
T Consensus 75 -~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ld-P~F~i~de~e~ 126 (1232)
T TIGR02785 75 -QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLD-PSFRILTDTEQ 126 (1232)
T ss_pred -cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCC-CCceeCCHHHH
Confidence 0001111122223334677999999975553322 1 222 23445887764
No 243
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.94 E-value=0.0056 Score=57.59 Aligned_cols=38 Identities=13% Similarity=0.144 Sum_probs=25.0
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
+.+++.||+|+|||..+ .++...+.....+.+++++..
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhCCCCcEEEEEH
Confidence 34899999999999765 344444444333446777653
No 244
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.92 E-value=0.013 Score=48.57 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=33.3
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
++|.||+|+|||..++..+.+.+.. +.+++|++.. +-..+..+.+.++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---GEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---CCcEEEEECC-CCHHHHHHHHHHc
Confidence 6899999999998876655555433 3477888653 4466666666665
No 245
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.92 E-value=0.011 Score=47.58 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=24.0
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
++|.|++|+|||..+...+... .. .+..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~-~~--~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI-AT--KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH-Hh--cCCEEEEEECCcch
Confidence 6899999999998764433332 22 23467777665443
No 246
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.91 E-value=0.0048 Score=55.93 Aligned_cols=140 Identities=9% Similarity=-0.025 Sum_probs=75.5
Q ss_pred CcHHHHhhhhhhh----CCC---cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhccc
Q 015093 63 PSAIQQRGIVPFC----KGL---DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM 135 (413)
Q Consensus 63 ~~~~Q~~~~~~~~----~~~---~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~ 135 (413)
+||||...+..+. +++ -.++.||.|.||+..+...+...++....+....=.| ..++.+....
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C----------~sC~~~~~g~ 72 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHC----------RGCQLMQAGT 72 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCC----------HHHHHHHcCC
Confidence 5677777776654 333 3789999999999887665555554332221111111 2233333222
Q ss_pred CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCce
Q 015093 136 GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQ 215 (413)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 215 (413)
.-.+..+.+... +..|-|-....+.+.+...+. ....+++|||+||.+.. .....+.+++..-|.+.-
T Consensus 73 HPD~~~i~p~~~----------~~~I~idqiR~l~~~~~~~~~-~g~~kV~iI~~ae~m~~-~AaNaLLKtLEEPp~~t~ 140 (334)
T PRK07993 73 HPDYYTLTPEKG----------KSSLGVDAVREVTEKLYEHAR-LGGAKVVWLPDAALLTD-AAANALLKTLEEPPENTW 140 (334)
T ss_pred CCCEEEEecccc----------cccCCHHHHHHHHHHHhhccc-cCCceEEEEcchHhhCH-HHHHHHHHHhcCCCCCeE
Confidence 222333322110 012223333333333333332 23479999999998743 346677777777777776
Q ss_pred EEEEeeeCC
Q 015093 216 VGVFSATMP 224 (413)
Q Consensus 216 ~i~lSAT~~ 224 (413)
++++|.-+.
T Consensus 141 fiL~t~~~~ 149 (334)
T PRK07993 141 FFLACREPA 149 (334)
T ss_pred EEEEECChh
Confidence 676666554
No 247
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.91 E-value=0.0034 Score=60.27 Aligned_cols=147 Identities=16% Similarity=0.083 Sum_probs=80.6
Q ss_pred HHHHhhhhhhh-----CC----CcEEEeCCCCCchhHHHHHHHHHhc-ccccCceeEEEEcccHHHHHHHHHHHHHhhcc
Q 015093 65 AIQQRGIVPFC-----KG----LDVIQQAQSGTGKTATFCSGILQQL-DYESLQCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 65 ~~Q~~~~~~~~-----~~----~~~lv~~~tGsGKT~~~~~~i~~~l-~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~ 134 (413)
|+|.-.+..+. .+ +.+++..|-|-|||......++..+ .....+..++++.+++.-+...++.++++...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 46666665554 12 3489999999999976654444333 33344568999999999999999988887654
Q ss_pred cCceEEEEECCcchHHHHHH-HhcCCcEEEeChHHHHHHHHc--CCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCC
Q 015093 135 MGVKVHACVGGTSVREDQRI-LSAGVHVVVGTPGRVFDMLRR--QSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLP 211 (413)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~-~~~~~~Iii~T~~~l~~~~~~--~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 211 (413)
......... .+. ......|.....+.+...+.. ....-.+.+++|+||+|...+......+..-....+
T Consensus 81 ~~~l~~~~~--------~~~~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r~ 152 (477)
T PF03354_consen 81 SPELRKRKK--------PKIIKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGARP 152 (477)
T ss_pred Chhhccchh--------hhhhhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhccCC
Confidence 311110000 000 011123333322332222222 122222468999999998865434444444444433
Q ss_pred CCceEEEEe
Q 015093 212 GKIQVGVFS 220 (413)
Q Consensus 212 ~~~~~i~lS 220 (413)
+++++.+|
T Consensus 153 -~pl~~~IS 160 (477)
T PF03354_consen 153 -NPLIIIIS 160 (477)
T ss_pred -CceEEEEe
Confidence 44444443
No 248
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.91 E-value=0.0065 Score=65.15 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=44.5
Q ss_pred CCcHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhcc--cccCceeEEEEcccHHHHHHH
Q 015093 62 KPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLD--YESLQCQALVLAPTRELAQQI 124 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~--~~~~~~~~lvl~P~~~l~~q~ 124 (413)
.|++-|.+++..++.+ +-++|.|..|+|||.+. -.++..+. ....+.+++.+.||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNMLPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHHhhccCceEEEEechHHHHHHH
Confidence 7999999999999865 55999999999999764 22222221 122345788899987755544
No 249
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.88 E-value=0.0056 Score=59.53 Aligned_cols=38 Identities=8% Similarity=0.266 Sum_probs=25.9
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..+++||||+|.+... ....+.+.+...+....+|+.+
T Consensus 118 k~KV~IIDEVh~LS~~-A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 118 RFKVYLIDEVHMLSTH-SFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CcEEEEEechHhcCHH-HHHHHHHHHhcCCCCcEEEEEE
Confidence 4689999999987433 3456667777766666566443
No 250
>PLN03025 replication factor C subunit; Provisional
Probab=96.88 E-value=0.013 Score=53.04 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=26.3
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
..+++|+||+|.+... ....+.+.+...++...++ ++++.
T Consensus 99 ~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~~i-l~~n~ 138 (319)
T PLN03025 99 RHKIVILDEADSMTSG-AQQALRRTMEIYSNTTRFA-LACNT 138 (319)
T ss_pred CeEEEEEechhhcCHH-HHHHHHHHHhcccCCceEE-EEeCC
Confidence 3689999999987533 3556666676666555555 44443
No 251
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.87 E-value=0.0049 Score=52.39 Aligned_cols=105 Identities=18% Similarity=0.297 Sum_probs=59.0
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcC
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAG 158 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
.+++.||+|+|||-. +.++...+.....+.+++++... .........++.
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~~~~---------------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSAE-EFIREFADALRD---------------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHHHHT----------------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecHH-HHHHHHHHHHHc----------------------------
Confidence 389999999999974 45555555544445577777643 333332222211
Q ss_pred CcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC-cHHHHHHHHhhCCC-CceEEEEeeeCCh
Q 015093 159 VHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-FKDQIYDIFQHLPG-KIQVGVFSATMPP 225 (413)
Q Consensus 159 ~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~~~~-~~~~i~lSAT~~~ 225 (413)
...+.+.+.+. ..+++++|++|.+.... +...+..+++.+.. +.++|+.|..++.
T Consensus 86 -----~~~~~~~~~~~-------~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 86 -----GEIEEFKDRLR-------SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPS 142 (219)
T ss_dssp -----TSHHHHHHHHC-------TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TT
T ss_pred -----ccchhhhhhhh-------cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCc
Confidence 11122222222 36899999999876432 34556666655533 4566655545544
No 252
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.84 E-value=0.0064 Score=58.46 Aligned_cols=38 Identities=8% Similarity=0.281 Sum_probs=27.2
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
.++++|+||+|.+... ....+.+.+...|....+|+.|
T Consensus 119 ~~kV~iIDE~~~ls~~-a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 119 RFKVYLIDEVHMLSGH-SFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CcEEEEEEChHhcCHH-HHHHHHHHHhccCCCeEEEEEE
Confidence 4689999999987543 3456667777777777666655
No 253
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.83 E-value=0.0077 Score=57.17 Aligned_cols=39 Identities=5% Similarity=0.209 Sum_probs=25.6
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
...+++|+||+|.+... -...+.+.+...++...+++.+
T Consensus 115 ~~~KVvIIDEah~Ls~~-A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNS-AFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred CCceEEEEeChHhCCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 34789999999987443 2445666666666655555443
No 254
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.0067 Score=54.35 Aligned_cols=141 Identities=11% Similarity=0.043 Sum_probs=75.2
Q ss_pred CCcHHHHhhhhhhhC----CC---cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcc
Q 015093 62 KPSAIQQRGIVPFCK----GL---DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~----~~---~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~ 134 (413)
.++|||...+..+.+ ++ -.++.||.|.||+..+...+...+...... .. |.. ...++.+...
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~-~~---Cg~-------C~sC~~~~~g 71 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS-EA---CGF-------CHSCELMQSG 71 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC-CC---CCC-------CHHHHHHHcC
Confidence 456777777766543 33 389999999999987765555555443211 11 111 1223333332
Q ss_pred cCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCc
Q 015093 135 MGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKI 214 (413)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~ 214 (413)
..-.+..+..+.. +..|-|-....+...+.... .....+++|||+||.+. ......+.+++..-|.+.
T Consensus 72 ~HPD~~~i~p~~~----------~~~I~vdqiR~l~~~~~~~~-~~~~~kV~iI~~ae~m~-~~AaNaLLKtLEEPp~~t 139 (319)
T PRK06090 72 NHPDLHVIKPEKE----------GKSITVEQIRQCNRLAQESS-QLNGYRLFVIEPADAMN-ESASNALLKTLEEPAPNC 139 (319)
T ss_pred CCCCEEEEecCcC----------CCcCCHHHHHHHHHHHhhCc-ccCCceEEEecchhhhC-HHHHHHHHHHhcCCCCCe
Confidence 2222333322110 01122222222222222222 23447899999999874 334677778888877777
Q ss_pred eEEEEeeeCCh
Q 015093 215 QVGVFSATMPP 225 (413)
Q Consensus 215 ~~i~lSAT~~~ 225 (413)
.++++|..+..
T Consensus 140 ~fiL~t~~~~~ 150 (319)
T PRK06090 140 LFLLVTHNQKR 150 (319)
T ss_pred EEEEEECChhh
Confidence 77766666543
No 255
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.82 E-value=0.0045 Score=53.31 Aligned_cols=40 Identities=8% Similarity=0.273 Sum_probs=23.9
Q ss_pred ccEEEEccchhhhcc-CcHHHHHHHHhhCCC-C-ceEEEEeeeC
Q 015093 183 IRMFVLDEADEMLSR-GFKDQIYDIFQHLPG-K-IQVGVFSATM 223 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~-~-~~~i~lSAT~ 223 (413)
++++++||+|.+... .+...+..+++.... + .+++ +|++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li-~ts~~ 140 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLL-ITGDR 140 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEE-EeCCC
Confidence 468999999987532 344555566655432 2 3455 45553
No 256
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.82 E-value=0.011 Score=58.19 Aligned_cols=158 Identities=17% Similarity=0.240 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCc--EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHH
Q 015093 46 GLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLD--VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQ 123 (413)
Q Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~--~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q 123 (413)
+.++.....+......++..-|.+.+..+...+. +++.|.-|-|||.+.=+++........ ..+++|..|+.+-++.
T Consensus 198 ~~~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~-~~~iiVTAP~~~nv~~ 276 (758)
T COG1444 198 PLDPVFPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG-SVRIIVTAPTPANVQT 276 (758)
T ss_pred CCCCCCCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC-CceEEEeCCCHHHHHH
Confidence 3333334445555555666666677777766543 888999999999776554433222222 4589999999998888
Q ss_pred HHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHH
Q 015093 124 IEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQI 203 (413)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~ 203 (413)
..+.+.+-....|.+..+...... ...........|-+.+|.... .. -+++|+|||=-+ ....+
T Consensus 277 Lf~fa~~~l~~lg~~~~v~~d~~g--~~~~~~~~~~~i~y~~P~~a~---------~~-~DllvVDEAAaI----plplL 340 (758)
T COG1444 277 LFEFAGKGLEFLGYKRKVAPDALG--EIREVSGDGFRIEYVPPDDAQ---------EE-ADLLVVDEAAAI----PLPLL 340 (758)
T ss_pred HHHHHHHhHHHhCCcccccccccc--ceeeecCCceeEEeeCcchhc---------cc-CCEEEEehhhcC----ChHHH
Confidence 888777655555443222111100 000000112234455555432 11 479999999876 45555
Q ss_pred HHHHhhCCCCceEEEEeeeCC
Q 015093 204 YDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 204 ~~~~~~~~~~~~~i~lSAT~~ 224 (413)
.+++..++ .+++|.|..
T Consensus 341 ~~l~~~~~----rv~~sTTIh 357 (758)
T COG1444 341 HKLLRRFP----RVLFSTTIH 357 (758)
T ss_pred HHHHhhcC----ceEEEeeec
Confidence 56666554 578999986
No 257
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.81 E-value=0.0076 Score=57.12 Aligned_cols=48 Identities=15% Similarity=0.183 Sum_probs=30.3
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKV 127 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~ 127 (413)
+.+++.|++|+|||... .++...+.....+.+++++.+ ..+..+....
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~ 189 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVDI 189 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHH
Confidence 34899999999999654 455555444444557777665 4555444433
No 258
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.80 E-value=0.0092 Score=51.17 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=17.0
Q ss_pred CCCcEEEeCCCCCchhHHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~ 96 (413)
.+..+++.||+|+|||..+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 356799999999999977643
No 259
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.80 E-value=0.0064 Score=61.15 Aligned_cols=40 Identities=13% Similarity=0.281 Sum_probs=26.9
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
.++++||||+|.+. ..-...+.+++...+...++|+. .|-
T Consensus 119 k~KViIIDEAh~LT-~eAqNALLKtLEEPP~~vrFILa-TTe 158 (944)
T PRK14949 119 RFKVYLIDEVHMLS-RSSFNALLKTLEEPPEHVKFLLA-TTD 158 (944)
T ss_pred CcEEEEEechHhcC-HHHHHHHHHHHhccCCCeEEEEE-CCC
Confidence 46899999999873 33445666677766666666654 443
No 260
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.77 E-value=0.011 Score=53.72 Aligned_cols=40 Identities=13% Similarity=0.299 Sum_probs=28.7
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEee
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSA 221 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (413)
....+||+|||+.+.. +....+.+.+...+.+..+++.+-
T Consensus 108 ~~~kviiidead~mt~-~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTE-DAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhH-HHHHHHHHHhccCCCCeEEEEEcC
Confidence 4578999999998754 346667777777777776665554
No 261
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.77 E-value=0.0074 Score=52.99 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=15.5
Q ss_pred CcEEEeCCCCCchhHHHH
Q 015093 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~ 95 (413)
.++++.||+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 468999999999998763
No 262
>PRK06893 DNA replication initiation factor; Validated
Probab=96.76 E-value=0.0052 Score=52.71 Aligned_cols=44 Identities=18% Similarity=0.381 Sum_probs=27.4
Q ss_pred CccEEEEccchhhhc-cCcHHHHHHHHhhCCC-CceEEEEeeeCCh
Q 015093 182 YIRMFVLDEADEMLS-RGFKDQIYDIFQHLPG-KIQVGVFSATMPP 225 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~-~~~~i~lSAT~~~ 225 (413)
+.+++++||+|.+.. ..+...+..+++.... +.+++++|++..+
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 468999999998753 2334455555555543 3456667777544
No 263
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.76 E-value=0.0056 Score=55.41 Aligned_cols=150 Identities=11% Similarity=0.011 Sum_probs=75.5
Q ss_pred CcHHHHhhhhhhhC--C---CcEEEeCCCCCchhHHHHHHHHHhcccccCc-eeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 63 PSAIQQRGIVPFCK--G---LDVIQQAQSGTGKTATFCSGILQQLDYESLQ-CQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 63 ~~~~Q~~~~~~~~~--~---~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~-~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
+||||...+..+.. + .-.++.||.|.||+..+...+...++....+ ... |.. ...++.+.....
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~---Cg~-------C~~C~~~~~~~H 71 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEP---CGT-------CAACNWFAQGNH 71 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCC---CCC-------CHHHHHHHcCCC
Confidence 36777777777654 2 2378999999999988766555555433211 010 111 111233322222
Q ss_pred ceEEEEECCcch--------H-------HH-HHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcH
Q 015093 137 VKVHACVGGTSV--------R-------ED-QRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFK 200 (413)
Q Consensus 137 ~~~~~~~~~~~~--------~-------~~-~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~ 200 (413)
-.+..+...... . .. .+.......|-|-....+.+.+..... ....+++|||+||.+.. .-.
T Consensus 72 PD~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~-~~~~kV~iI~~ae~m~~-~Aa 149 (342)
T PRK06964 72 PDYRIVRPEALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTH-RGGARVVVLYPAEALNV-AAA 149 (342)
T ss_pred CCEEEEecccccccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCc-cCCceEEEEechhhcCH-HHH
Confidence 122222211000 0 00 000000123444444444444433333 23468999999998743 345
Q ss_pred HHHHHHHhhCCCCceEEEEeeeCC
Q 015093 201 DQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
..+.+.+..-|++..++++|..+.
T Consensus 150 NaLLKtLEEPp~~t~fiL~t~~~~ 173 (342)
T PRK06964 150 NALLKTLEEPPPGTVFLLVSARID 173 (342)
T ss_pred HHHHHHhcCCCcCcEEEEEECChh
Confidence 667777777777776776666654
No 264
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.75 E-value=0.0081 Score=58.34 Aligned_cols=42 Identities=7% Similarity=0.242 Sum_probs=27.8
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
..++++||||+|.+... -.+.+.+.+..-+....+|+.|.-+
T Consensus 123 gr~KViIIDEah~Ls~~-AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNH-AFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred CCceEEEEEChHhcCHH-HHHHHHHhhccCCCCceEEEEeCCh
Confidence 34789999999987433 3445556666666667666655444
No 265
>PRK08727 hypothetical protein; Validated
Probab=96.75 E-value=0.0089 Score=51.43 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=24.3
Q ss_pred ccEEEEccchhhhccC-cHHHHHHHHhhCCC-CceEEEEeeeCCh
Q 015093 183 IRMFVLDEADEMLSRG-FKDQIYDIFQHLPG-KIQVGVFSATMPP 225 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~-~~~~~~~~~~~~~~-~~~~i~lSAT~~~ 225 (413)
.+++|+||+|.+.... ....+..++..... +.++++.|-.++.
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~ 138 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPD 138 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChh
Confidence 5799999999875432 33345555554432 3345544444443
No 266
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.74 E-value=0.016 Score=53.05 Aligned_cols=38 Identities=11% Similarity=0.208 Sum_probs=24.9
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..++||+||+|.+... ....+...+...+...++|+.+
T Consensus 125 ~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 125 DYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 3579999999987432 3445666666666666666543
No 267
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.72 E-value=0.0025 Score=58.82 Aligned_cols=56 Identities=29% Similarity=0.297 Sum_probs=40.0
Q ss_pred CcHHHHhhhhhh------hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHH
Q 015093 63 PSAIQQRGIVPF------CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELA 121 (413)
Q Consensus 63 ~~~~Q~~~~~~~------~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~ 121 (413)
|.+-|+++++.+ .++..++|.|+.|+|||..+ -.+.+.+.. .+..+++++||-.-|
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~--~~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYLRS--RGKKVLVTAPTGIAA 63 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHhcc--ccceEEEecchHHHH
Confidence 667788888887 66788999999999999764 334444333 234788888875433
No 268
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.72 E-value=0.017 Score=52.31 Aligned_cols=38 Identities=8% Similarity=0.138 Sum_probs=26.3
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
.++||+||+|.+........+..++...+.+.++++.|
T Consensus 101 ~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 101 GKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 57999999998733334556666677777677666544
No 269
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.69 E-value=0.0072 Score=59.63 Aligned_cols=135 Identities=14% Similarity=0.116 Sum_probs=75.5
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS 156 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
.+-+++++|.|+|||....-++. .. ..+..+.|+.-.. --++-.+.+..+....+--+-.. ++.. . ....
T Consensus 37 ~RL~li~APAGfGKttl~aq~~~-~~---~~~~~v~Wlslde-~dndp~rF~~yLi~al~~~~p~~-~~~a---~-~l~q 106 (894)
T COG2909 37 YRLILISAPAGFGKTTLLAQWRE-LA---ADGAAVAWLSLDE-SDNDPARFLSYLIAALQQATPTL-GDEA---Q-TLLQ 106 (894)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHH-hc---CcccceeEeecCC-ccCCHHHHHHHHHHHHHHhCccc-cHHH---H-HHHH
Confidence 45589999999999976544332 22 2244677776432 24444444444333221111111 1111 1 1111
Q ss_pred cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCC
Q 015093 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 157 ~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
. +. ......+.+.+...-......=++|+|+.|.+.+......+..+++..|.+...++.|-+-+
T Consensus 107 ~--~~-~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 107 K--HQ-YVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred h--cc-cccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 1 11 12222333333221111222358999999999998888999999999999999998887754
No 270
>PRK06921 hypothetical protein; Provisional
Probab=96.69 E-value=0.016 Score=50.87 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=24.5
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
+.++++.|++|+|||..+. ++...+.... +..++++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~~-g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRKK-GVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhhc-CceEEEEEH
Confidence 5679999999999997653 4444443321 335666653
No 271
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=96.68 E-value=0.0023 Score=62.06 Aligned_cols=157 Identities=21% Similarity=0.247 Sum_probs=91.4
Q ss_pred CCcHHHHhhhhhhh--------CCC--cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 62 KPSAIQQRGIVPFC--------KGL--DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~--------~~~--~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
.+...|.+++-... +|. .+||-...|-||-.+..-.|++...+++ +++||+.-+..|--+..+.++..
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGR--KrAlW~SVSsDLKfDAERDL~Di 341 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGR--KRALWFSVSSDLKFDAERDLRDI 341 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhccc--ceeEEEEeccccccchhhchhhc
Confidence 46667877774332 233 2777777777776554334555554443 48999999999987777777766
Q ss_pred hcccCceEEEEECCcc--hHHHHHHHhcCCcEEEeChHHHHHHHHcCC-------------CCCCCccEEEEccchhhhc
Q 015093 132 GDYMGVKVHACVGGTS--VREDQRILSAGVHVVVGTPGRVFDMLRRQS-------------LRPDYIRMFVLDEADEMLS 196 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~-------------~~~~~~~~iIiDE~h~~~~ 196 (413)
+. .++.|..+..-.- +.... .-..+-.|+++||..|.-.-.... ....+-++||+||||...+
T Consensus 342 gA-~~I~V~alnK~KYakIss~e-n~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKN 419 (1300)
T KOG1513|consen 342 GA-TGIAVHALNKFKYAKISSKE-NTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKN 419 (1300)
T ss_pred CC-CCccceehhhcccccccccc-cCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhcc
Confidence 43 2344433321000 00000 001124699999998854322110 0011136999999998654
Q ss_pred c---------CcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 197 R---------GFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 197 ~---------~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
. .-+..+..+-+.+| +.+++.-|||-
T Consensus 420 L~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATG 454 (1300)
T KOG1513|consen 420 LVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATG 454 (1300)
T ss_pred cccccCCCcCcccHhHHHHHHhCC-CceEEEeeccC
Confidence 1 13356666667776 57899999996
No 272
>PF13173 AAA_14: AAA domain
Probab=96.67 E-value=0.032 Score=42.91 Aligned_cols=38 Identities=11% Similarity=0.229 Sum_probs=26.3
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCC
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
-.+|++||+|.+ +++...+..+.... .+.+++ +|++..
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~-~~~~ii-~tgS~~ 99 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNG-PNIKII-LTGSSS 99 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhc-cCceEE-EEccch
Confidence 468999999998 45677777777755 345555 555543
No 273
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.65 E-value=0.015 Score=54.61 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=22.2
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEE
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVL 114 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl 114 (413)
.+++|.||+|+|||...- .++..+........++++
T Consensus 56 ~~~lI~G~~GtGKT~l~~-~v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVK-KVFEELEEIAVKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhcCCcEEEEE
Confidence 569999999999997753 333333332223345555
No 274
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.65 E-value=0.01 Score=51.59 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=30.9
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKV 127 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~ 127 (413)
.+.++++.||+|+|||..+.....+ +... + .-+..+++.+++.++...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~-l~~~--g-~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE-LLKA--G-ISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH-HHHc--C-CeEEEEEHHHHHHHHHHH
Confidence 5678999999999999876444433 3322 3 344445566776665443
No 275
>PRK12377 putative replication protein; Provisional
Probab=96.64 E-value=0.014 Score=50.43 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=25.8
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQI 124 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~ 124 (413)
.++++.||+|+|||..+. ++...+... +..++++ +...+..+.
T Consensus 102 ~~l~l~G~~GtGKThLa~-AIa~~l~~~--g~~v~~i-~~~~l~~~l 144 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAA-AIGNRLLAK--GRSVIVV-TVPDVMSRL 144 (248)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHc--CCCeEEE-EHHHHHHHH
Confidence 569999999999997653 344444332 2244443 444555543
No 276
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.62 E-value=0.0096 Score=57.97 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=27.0
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
...+++||||+|.+... -...+.+.+...+....+|+.+
T Consensus 117 ~~~KVvIIDEah~Lt~~-A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTA-GFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 34689999999987533 3455666777766666666555
No 277
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.62 E-value=0.028 Score=48.39 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=22.0
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEE
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVL 114 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl 114 (413)
..+++.|++|+|||..+. ++...+... +..++++
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~~--g~~v~~i 133 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLLR--GKSVLII 133 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHhc--CCeEEEE
Confidence 468999999999997654 333333332 3355555
No 278
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.61 E-value=0.0092 Score=55.99 Aligned_cols=136 Identities=17% Similarity=0.243 Sum_probs=74.5
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH-HHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcC
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE-LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAG 158 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
.++.|+.|||||......++..+.....+.+++++-++.. +..-....+.......++........... .......+
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i~~~~~g 81 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EIKILNTG 81 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EEEecCCC
Confidence 6789999999998887766665555323458899988886 66666777766555444432221111100 00000113
Q ss_pred CcEEEeCh-HHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCC--CCceEEEEeeeCChh
Q 015093 159 VHVVVGTP-GRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLP--GKIQVGVFSATMPPE 226 (413)
Q Consensus 159 ~~Iii~T~-~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~--~~~~~i~lSAT~~~~ 226 (413)
..|++..- +.-.. +. ....+..+.+|||..+... .+..+..+++ .....+.+|.||...
T Consensus 82 ~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 82 KKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESP 143 (396)
T ss_pred eEEEeecccCChhH-hh----CcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCC
Confidence 34555443 21111 11 1122689999999987433 3333333333 222247788888653
No 279
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.59 E-value=0.0048 Score=53.40 Aligned_cols=58 Identities=12% Similarity=0.234 Sum_probs=39.1
Q ss_pred ccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEE
Q 015093 37 EVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVL 114 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl 114 (413)
.....|+++++++.+.+.+.. ...-++|.+|||||||.+ +.++.+.+.+.... .++-+
T Consensus 103 ~~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~~~~~-HIlTI 160 (353)
T COG2805 103 SKIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINKHKAK-HILTI 160 (353)
T ss_pred ccCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhccCCc-ceEEe
Confidence 335677777777777764432 123389999999999976 57777877666543 44433
No 280
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.59 E-value=0.01 Score=60.32 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=55.6
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc-CceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES-LQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~-~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
..|++-|.+++.+. .+.++|.|..|||||.+.+.-+...+.... ...++|+++-|+..+..+.+++.++..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 35889999999753 567999999999999988777766654322 234799999999989888888877653
No 281
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.58 E-value=0.012 Score=57.69 Aligned_cols=37 Identities=8% Similarity=0.260 Sum_probs=26.4
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEE
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVF 219 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~l 219 (413)
.++++||||+|.+... -...+.+++..-+....+|+.
T Consensus 119 ~~KV~IIDEah~Ls~~-a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 119 RFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCEEEEEechHhCCHH-HHHHHHHHHHcCCCCeEEEEe
Confidence 4789999999987433 456666777777766666654
No 282
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.58 E-value=0.01 Score=58.03 Aligned_cols=39 Identities=10% Similarity=0.294 Sum_probs=24.5
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..++++||||+|.+.... ...+.+.+...+....+|+.|
T Consensus 123 g~~KV~IIDEvh~Ls~~a-~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTA-FNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHH-HHHHHHhcccCCCCeEEEEEE
Confidence 347899999999874332 344555555555555555544
No 283
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.57 E-value=0.014 Score=53.58 Aligned_cols=132 Identities=13% Similarity=0.108 Sum_probs=66.5
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCc-------eeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHH
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQ-------CQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQ 152 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~-------~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (413)
.++.||.|.||+..+...+...++....+ ...+-+|+.-. .++.+.....-.+..+.........
T Consensus 44 ~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~-------~c~~i~~~~HPDl~~i~~~~~~~~~- 115 (365)
T PRK07471 44 WLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP-------VARRIAAGAHGGLLTLERSWNEKGK- 115 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh-------HHHHHHccCCCCeEEEecccccccc-
Confidence 88999999999988766665555443211 11222233211 2222222221122222221100000
Q ss_pred HHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCC
Q 015093 153 RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 153 ~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
.....|.|-....+.+.+.... ......++||||+|.+- ......+.+.++..+....++++|..+.
T Consensus 116 ---~~~~~I~VdqiR~l~~~~~~~~-~~~~~kVviIDead~m~-~~aanaLLK~LEepp~~~~~IL~t~~~~ 182 (365)
T PRK07471 116 ---RLRTVITVDEVRELISFFGLTA-AEGGWRVVIVDTADEMN-ANAANALLKVLEEPPARSLFLLVSHAPA 182 (365)
T ss_pred ---cccccccHHHHHHHHHHhCcCc-ccCCCEEEEEechHhcC-HHHHHHHHHHHhcCCCCeEEEEEECCch
Confidence 0012344433333333333222 23447899999999873 3445667777777766666666665553
No 284
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.56 E-value=0.02 Score=56.20 Aligned_cols=39 Identities=10% Similarity=0.278 Sum_probs=26.7
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..++++||||+|.+... -...+.+.+...+....+|+.|
T Consensus 118 ~~~KVvIIdev~~Lt~~-a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTN-AFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhhCCHH-HHHHHHHHHHcCCCCeEEEEEe
Confidence 34789999999987432 3456667777766666666544
No 285
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.089 Score=47.43 Aligned_cols=83 Identities=18% Similarity=0.276 Sum_probs=46.0
Q ss_pred cccccCccCCCCCHHHHHHHHhC--------CCC------CCcHHHHhhh------hhhhCC-----CcEEEeCCCCCch
Q 015093 36 DEVYDSFDSMGLKENLLRGIYAY--------GFE------KPSAIQQRGI------VPFCKG-----LDVIQQAQSGTGK 90 (413)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~l~~~--------~~~------~~~~~Q~~~~------~~~~~~-----~~~lv~~~tGsGK 90 (413)
+...+.|+.++....+.+.|+.- .+. .-...-.+|+ +.+.+| +.++.++|+|+||
T Consensus 179 ~~~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGK 258 (491)
T KOG0738|consen 179 KGEDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGK 258 (491)
T ss_pred ccccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcH
Confidence 34467888888888888777642 111 1111111221 111222 5699999999999
Q ss_pred hHHHHHHHHHhcccccCceeEEEEcccHHHHHHHH
Q 015093 91 TATFCSGILQQLDYESLQCQALVLAPTRELAQQIE 125 (413)
Q Consensus 91 T~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~ 125 (413)
|+.+=..+.+. + ..++=+.+..|...|.
T Consensus 259 TlLAKAvATEc------~-tTFFNVSsstltSKwR 286 (491)
T KOG0738|consen 259 TLLAKAVATEC------G-TTFFNVSSSTLTSKWR 286 (491)
T ss_pred HHHHHHHHHhh------c-CeEEEechhhhhhhhc
Confidence 97663222221 2 5566666666655443
No 286
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.036 Score=48.02 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=75.0
Q ss_pred hhhhCCC-----cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCc
Q 015093 72 VPFCKGL-----DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGT 146 (413)
Q Consensus 72 ~~~~~~~-----~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ 146 (413)
+++.+|+ .+++.+|+|+||+..+-..+.+. + -.++-+.+..|+..|.-+-.++..
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA------n-STFFSvSSSDLvSKWmGESEkLVk------------- 215 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA------N-STFFSVSSSDLVSKWMGESEKLVK------------- 215 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc------C-CceEEeehHHHHHHHhccHHHHHH-------------
Confidence 3455553 38999999999996543222221 2 567777788888877655444321
Q ss_pred chHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc---CcHHHHHHH----HhhCC----CCce
Q 015093 147 SVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR---GFKDQIYDI----FQHLP----GKIQ 215 (413)
Q Consensus 147 ~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~---~~~~~~~~~----~~~~~----~~~~ 215 (413)
.|+.+.+.. ..++|.+||++.+... +....-.++ +-++. ++-.
T Consensus 216 ---------------------nLFemARe~-----kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 216 ---------------------NLFEMAREN-----KPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred ---------------------HHHHHHHhc-----CCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCc
Confidence 122222222 2578999999976532 122222222 22222 2456
Q ss_pred EEEEeeeCChhHHH-HHHHhcCCCEEEEecCCcc
Q 015093 216 VGVFSATMPPEALE-ITRKFMNKPVRILVKRDEL 248 (413)
Q Consensus 216 ~i~lSAT~~~~~~~-~~~~~~~~~~~~~~~~~~~ 248 (413)
++.+.||-.++..+ .+++-+...+.+......+
T Consensus 270 vLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~A 303 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHA 303 (439)
T ss_pred eEEEecCCCchhHHHHHHHHhhcceeccCCcHHH
Confidence 88899998776544 4566666666555544433
No 287
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.012 Score=54.31 Aligned_cols=38 Identities=11% Similarity=0.300 Sum_probs=24.3
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..+++|+||+|.+.... ...+.+.+...+....+++.|
T Consensus 119 ~~kviIIDEa~~l~~~a-~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 119 RFKVYLIDEVHMLSRHS-FNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CceEEEEEChhhcCHHH-HHHHHHHHhcCCCCeEEEEEc
Confidence 46899999999874322 334555666655566566543
No 288
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=96.52 E-value=0.019 Score=54.22 Aligned_cols=149 Identities=11% Similarity=0.009 Sum_probs=83.8
Q ss_pred CCcHHHHhhhhhhhC------C----CcEEEeCCCCCchhHHHH-HHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH
Q 015093 62 KPSAIQQRGIVPFCK------G----LDVIQQAQSGTGKTATFC-SGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~------~----~~~lv~~~tGsGKT~~~~-~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
.+-|||.-++.++.- + +.++|..|-+-|||..+. +.....+.....+..+.|+.|+.+-+.+....++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 788999999988862 2 248999999999996654 22223333445566899999999988888887776
Q ss_pred hhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc--CCCCCCCccEEEEccchhhhccCcHHHHHHHHh
Q 015093 131 LGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR--QSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQ 208 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~--~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~ 208 (413)
...... ........-.....|...--......+.. ...+-.+..+.|+||.|.+.... ..+..+..
T Consensus 141 mv~~~~----------~l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~~~~~ 208 (546)
T COG4626 141 MVKRDD----------DLRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYSEAKG 208 (546)
T ss_pred HHHhCc----------chhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHHHHHh
Confidence 544332 00000000001111222211222222222 22333346799999999875542 33444433
Q ss_pred hCC--CCceEEEEeee
Q 015093 209 HLP--GKIQVGVFSAT 222 (413)
Q Consensus 209 ~~~--~~~~~i~lSAT 222 (413)
-+. ++.++++.|..
T Consensus 209 g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 209 GLGARPEGLVVYITTS 224 (546)
T ss_pred hhccCcCceEEEEecC
Confidence 332 24566766653
No 289
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.52 E-value=0.059 Score=41.46 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=13.2
Q ss_pred EEEeCCCCCchhHHH
Q 015093 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~ 94 (413)
+++.||+|+|||..+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999765
No 290
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.50 E-value=0.019 Score=49.33 Aligned_cols=41 Identities=7% Similarity=0.286 Sum_probs=24.5
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhhCCCCce-EEEEeeeCC
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQ-VGVFSATMP 224 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~-~i~lSAT~~ 224 (413)
.+++|+||+|.+.. .....+..+++....... +++++++..
T Consensus 91 ~~~liiDdi~~l~~-~~~~~L~~~~~~~~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 91 AELYAVDDVERLDD-AQQIALFNLFNRVRAHGQGALLVAGPAA 132 (227)
T ss_pred CCEEEEeChhhcCc-hHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 57899999998643 234445555554433333 466666653
No 291
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.48 E-value=0.011 Score=50.79 Aligned_cols=86 Identities=24% Similarity=0.356 Sum_probs=62.3
Q ss_pred CceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCc-chHHHHHHHh-cCCcEEEeChHHHHHHHHcCCCCCCCcc
Q 015093 107 LQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGT-SVREDQRILS-AGVHVVVGTPGRVFDMLRRQSLRPDYIR 184 (413)
Q Consensus 107 ~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~Iii~T~~~l~~~~~~~~~~~~~~~ 184 (413)
+.+.+||||.+--.+....+.++.+... +..+.-+.... ...++...+. ...+|.|+||+++..+++...+.++++.
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 4578999999877788888888876311 22333333222 3444444444 4679999999999999999999999999
Q ss_pred EEEEccchh
Q 015093 185 MFVLDEADE 193 (413)
Q Consensus 185 ~iIiDE~h~ 193 (413)
+||+|--|.
T Consensus 204 ~ivlD~s~~ 212 (252)
T PF14617_consen 204 RIVLDWSYL 212 (252)
T ss_pred EEEEcCCcc
Confidence 999998773
No 292
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.47 E-value=0.032 Score=51.04 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=30.1
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
...+++||||+|.+. ..-...+.+.+...+.+..++++|..+
T Consensus 140 g~~rVviIDeAd~l~-~~aanaLLk~LEEpp~~~~fiLit~~~ 181 (351)
T PRK09112 140 GNWRIVIIDPADDMN-RNAANAILKTLEEPPARALFILISHSS 181 (351)
T ss_pred CCceEEEEEchhhcC-HHHHHHHHHHHhcCCCCceEEEEECCh
Confidence 347899999999874 334566777788776677677776444
No 293
>CHL00181 cbbX CbbX; Provisional
Probab=96.45 E-value=0.02 Score=50.77 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=16.9
Q ss_pred CCcEEEeCCCCCchhHHHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSG 97 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~ 97 (413)
+.++++.||+|+|||..+-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456899999999999877443
No 294
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.45 E-value=0.015 Score=56.60 Aligned_cols=24 Identities=17% Similarity=-0.011 Sum_probs=18.3
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhc
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l 102 (413)
..|+.+|.|+|||.++.+.+-...
T Consensus 40 a~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcc
Confidence 378899999999998865554443
No 295
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.45 E-value=0.032 Score=52.85 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=25.5
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
+.+++.||+|+|||..+ .++...+.....+.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH
Confidence 35899999999999765 344444444333447777764
No 296
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.44 E-value=0.015 Score=56.91 Aligned_cols=39 Identities=8% Similarity=0.240 Sum_probs=27.2
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
...+++||||+|.+... -...+.+.+...+....+|+.+
T Consensus 131 a~~KVvIIDEad~Ls~~-a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTA-AFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred CCcEEEEEEChHhCCHH-HHHHHHHHHHhCCCCeEEEEEe
Confidence 44689999999987433 3455666677777677666654
No 297
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.43 E-value=0.024 Score=49.78 Aligned_cols=40 Identities=20% Similarity=0.454 Sum_probs=25.9
Q ss_pred ccEEEEccchhhhccCc--HHHHHHHHhhCCC--CceEEEEeeeC
Q 015093 183 IRMFVLDEADEMLSRGF--KDQIYDIFQHLPG--KIQVGVFSATM 223 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~--~~~~~~~~~~~~~--~~~~i~lSAT~ 223 (413)
++++||||+|++..... ...+...++.+.+ ...+|++ +|.
T Consensus 146 vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v-Gt~ 189 (302)
T PF05621_consen 146 VRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV-GTR 189 (302)
T ss_pred CcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe-ccH
Confidence 68999999999775443 3445555666655 4556654 554
No 298
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.41 E-value=0.064 Score=51.10 Aligned_cols=121 Identities=16% Similarity=0.199 Sum_probs=57.9
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc-ccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA-PTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRI 154 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~-P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (413)
.|+.+.+.||+|+|||......+..... ...+.++.++. .+.-.. ..+.++.+....++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~-~~~gkkVaLIdtDtyRig--A~EQLk~ya~iLgv~v~~------------- 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAA-QHAPRDVALVTTDTQRVG--GREQLHSYGRQLGIAVHE------------- 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCceEEEeccccccc--HHHHHHHhhcccCceeEe-------------
Confidence 4567889999999999876444333222 22122444443 221111 112233333333332211
Q ss_pred HhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC-cHHHHHHHHhhCCCCceEEEEeeeCCh
Q 015093 155 LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-FKDQIYDIFQHLPGKIQVGVFSATMPP 225 (413)
Q Consensus 155 ~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~lSAT~~~ 225 (413)
..+...+...+... .++++|+||.+-...... ....+..+.. ......++.++++...
T Consensus 413 --------a~d~~~L~~aL~~l----~~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~~~a~lLVLpAtss~ 471 (559)
T PRK12727 413 --------ADSAESLLDLLERL----RDYKLVLIDTAGMGQRDRALAAQLNWLRA-ARQVTSLLVLPANAHF 471 (559)
T ss_pred --------cCcHHHHHHHHHHh----ccCCEEEecCCCcchhhHHHHHHHHHHHH-hhcCCcEEEEECCCCh
Confidence 11333444444432 236899999998642211 1122222222 2233457778888753
No 299
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.41 E-value=0.018 Score=56.58 Aligned_cols=38 Identities=8% Similarity=0.257 Sum_probs=25.9
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..+++||||+|.+... ....+.+.+...+....+|+.|
T Consensus 119 k~KVIIIDEad~Ls~~-A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 119 KYKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CcEEEEEECccccCHH-HHHHHHHHHHhCCCCcEEEEEe
Confidence 4689999999986432 3445666676666666666554
No 300
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.38 E-value=0.021 Score=55.43 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=24.6
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..+++|+||+|.+... ....+.+.+...+....+|++|
T Consensus 119 ~~KVIIIDEad~Lt~~-A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 119 KYKVYIIDEAHMLSTS-AWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CcEEEEEechHhCCHH-HHHHHHHHHHhCCCcEEEEEEC
Confidence 3689999999987432 3455666666666555555544
No 301
>PRK08116 hypothetical protein; Validated
Probab=96.37 E-value=0.048 Score=47.92 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=24.8
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQ 122 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~ 122 (413)
.+++.|++|+|||..+. ++...+... +..++++. ...+..
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~~--~~~v~~~~-~~~ll~ 155 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIEK--GVPVIFVN-FPQLLN 155 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHHc--CCeEEEEE-HHHHHH
Confidence 49999999999997754 444444433 23454443 344444
No 302
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.37 E-value=0.052 Score=49.25 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=24.9
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
.++|++||+|.+... ....+...+...+....+|+.+
T Consensus 103 ~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 103 FKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred ceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 579999999987432 2445666666666666666544
No 303
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.36 E-value=0.066 Score=52.25 Aligned_cols=145 Identities=12% Similarity=0.066 Sum_probs=79.6
Q ss_pred CcHHHHhhhhhhh---CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc--
Q 015093 63 PSAIQQRGIVPFC---KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV-- 137 (413)
Q Consensus 63 ~~~~Q~~~~~~~~---~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~-- 137 (413)
|.|.-.+-++.+. +.+-.++.+|-|-|||.+..+.+...+.. .+.+++|..|...-+.+..+.++......+.
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f--~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~ 247 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF--LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKP 247 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh--cCCeEEEECCChhhHHHHHHHHHHHHHHhcccc
Confidence 3444444444433 34558889999999998875554433321 2458999999999899888888777653321
Q ss_pred ------eEEEEECCcchHHHHHHHhcCCcEEEeChHHHH----H----HHHcCCCCCCCccEEEEccchhhhccCcHHHH
Q 015093 138 ------KVHACVGGTSVREDQRILSAGVHVVVGTPGRVF----D----MLRRQSLRPDYIRMFVLDEADEMLSRGFKDQI 203 (413)
Q Consensus 138 ------~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~----~----~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~ 203 (413)
.+....|+. ..|.+..|.... . .-......-..++++|+|||+.+.... ...+
T Consensus 248 ~fp~~~~iv~vkgg~------------E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~~~-l~aI 314 (752)
T PHA03333 248 WFPEEFKIVTLKGTD------------ENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNPGA-LLSV 314 (752)
T ss_pred ccCCCceEEEeeCCe------------eEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCHHH-HHHH
Confidence 111111211 122332221111 0 000122232346899999999874432 2223
Q ss_pred HHHHhhCCCCceEEEEeeeCC
Q 015093 204 YDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 204 ~~~~~~~~~~~~~i~lSAT~~ 224 (413)
..++.. .+.+++.+|.+..
T Consensus 315 lP~l~~--~~~k~IiISS~~~ 333 (752)
T PHA03333 315 LPLMAV--KGTKQIHISSPVD 333 (752)
T ss_pred HHHHcc--CCCceEEEeCCCC
Confidence 333333 3566777887764
No 304
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.36 E-value=0.096 Score=45.86 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=66.9
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc-c--HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP-T--RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRI 154 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P-~--~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (413)
..+.+.+++|+|||..+...+.. +.. . +.++.++.. + .+...||...... .+..+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~-l~~-~-~~~v~~i~~D~~ri~~~~ql~~~~~~----~~~~~~-------------- 134 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQ-FHG-K-KKTVGFITTDHSRIGTVQQLQDYVKT----IGFEVI-------------- 134 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHH-HHH-c-CCeEEEEecCCCCHHHHHHHHHHhhh----cCceEE--------------
Confidence 56899999999999866443332 222 2 224444433 2 2345554433222 222221
Q ss_pred HhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc-cCcHHHHHHHHhhCCCCceEEEEeeeCCh-hHHHHHH
Q 015093 155 LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS-RGFKDQIYDIFQHLPGKIQVGVFSATMPP-EALEITR 232 (413)
Q Consensus 155 ~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~-~~~~~~~ 232 (413)
...+++.+...+..-. ....+++|++|-+-+... ......+.+++....+...++.+|||... +..+.++
T Consensus 135 -------~~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~ 206 (270)
T PRK06731 135 -------AVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 206 (270)
T ss_pred -------ecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHH
Confidence 1134445544443211 112368999999876532 22334455555555444457779998754 4555555
Q ss_pred Hh
Q 015093 233 KF 234 (413)
Q Consensus 233 ~~ 234 (413)
.+
T Consensus 207 ~f 208 (270)
T PRK06731 207 NF 208 (270)
T ss_pred Hh
Confidence 54
No 305
>PRK09183 transposase/IS protein; Provisional
Probab=96.34 E-value=0.043 Score=47.97 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=27.6
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQ 122 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~ 122 (413)
+..+.++++.||+|+|||..+........ . .+..++++. ...+..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~-~--~G~~v~~~~-~~~l~~ 143 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV-R--AGIKVRFTT-AADLLL 143 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH-H--cCCeEEEEe-HHHHHH
Confidence 45678899999999999977654433222 2 233566554 334443
No 306
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.33 E-value=0.029 Score=49.80 Aligned_cols=19 Identities=32% Similarity=0.358 Sum_probs=16.2
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
+.++++.||+|+|||..+-
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4579999999999998763
No 307
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.33 E-value=0.054 Score=46.46 Aligned_cols=53 Identities=15% Similarity=0.067 Sum_probs=33.9
Q ss_pred hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
..+..+++.+++|+|||..++..+...+.+ +.++++++.. .-..+..+.+.++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~---g~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQN---GYSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEeCC-CCHHHHHHHHHHh
Confidence 346679999999999998765544443332 3477888744 3345555555544
No 308
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.32 E-value=0.03 Score=54.04 Aligned_cols=38 Identities=8% Similarity=0.238 Sum_probs=26.7
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..+++|+||+|.+... ....+.+.+...+....+|+.|
T Consensus 119 ~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 119 RYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 4689999999987433 3456667777766666666555
No 309
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.29 E-value=0.059 Score=54.23 Aligned_cols=18 Identities=44% Similarity=0.447 Sum_probs=14.6
Q ss_pred EEEeCCCCCchhHHHHHH
Q 015093 80 VIQQAQSGTGKTATFCSG 97 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~ 97 (413)
++|.|+||+|||.+.-..
T Consensus 784 LYIyG~PGTGKTATVK~V 801 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSV 801 (1164)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 469999999999886443
No 310
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.29 E-value=0.0084 Score=49.84 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=25.3
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEE
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGV 218 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (413)
...+.||+|||+.+.+. .+..+.+......+..++.+
T Consensus 112 grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFal 148 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFAL 148 (333)
T ss_pred CceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhh
Confidence 34689999999987543 46667777666666555443
No 311
>PTZ00293 thymidine kinase; Provisional
Probab=96.28 E-value=0.029 Score=46.77 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=27.3
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
|.=-++.||++||||.-.+..+...... +.+++++-|...
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~a---g~kv~~~kp~~D 43 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYS---EKKCVVIKYSKD 43 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHc---CCceEEEEeccc
Confidence 3446889999999997665554443322 347888888654
No 312
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.078 Score=49.43 Aligned_cols=131 Identities=18% Similarity=0.139 Sum_probs=62.1
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS 156 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
++.+.+.||+|+|||......+.............++.+.+.-. ...+.+..++..+++.+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri--galEQL~~~a~ilGvp~~~--------------- 253 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI--GGHEQLRIYGKLLGVSVRS--------------- 253 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch--hHHHHHHHHHHHcCCceec---------------
Confidence 45589999999999977643332222111112234555554322 1223344444434443322
Q ss_pred cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc-CcHHHHHHHHhhCCCCceEEEEeeeCChhH-HHHHHHh
Q 015093 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR-GFKDQIYDIFQHLPGKIQVGVFSATMPPEA-LEITRKF 234 (413)
Q Consensus 157 ~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~-~~~~~~~ 234 (413)
+.++..+...+.. +.+.+.+++|.+-+.... .....+..+.........++.+|||..... .+....+
T Consensus 254 ------v~~~~dl~~al~~----l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f 323 (420)
T PRK14721 254 ------IKDIADLQLMLHE----LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAY 323 (420)
T ss_pred ------CCCHHHHHHHHHH----hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHh
Confidence 2222233222222 334688999987533211 112233333222223345788999976543 3334333
No 313
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.22 E-value=0.096 Score=48.55 Aligned_cols=125 Identities=15% Similarity=0.155 Sum_probs=62.4
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEE-cccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhc
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVL-APTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSA 157 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl-~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
-+++.+|+|+|||.+....+...... . +.++.++ +.+.-.+ ....++.++...++.+..
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~-~-G~~V~Lit~Dt~R~a--A~eQLk~yAe~lgvp~~~---------------- 284 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLH-M-GKSVSLYTTDNYRIA--AIEQLKRYADTMGMPFYP---------------- 284 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh-c-CCeEEEecccchhhh--HHHHHHHHHHhcCCCeee----------------
Confidence 37889999999998876555433222 1 2244433 3332111 122344444433332211
Q ss_pred CCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhh-ccCcHHHHHHHHhhCC---CCceEEEEeeeCChh-HHHHHH
Q 015093 158 GVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEML-SRGFKDQIYDIFQHLP---GKIQVGVFSATMPPE-ALEITR 232 (413)
Q Consensus 158 ~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~-~~~~~~~~~~~~~~~~---~~~~~i~lSAT~~~~-~~~~~~ 232 (413)
+..+..+...+.. ..+++|++|=+.... +......+.+++.... +...++.+|||.... ......
T Consensus 285 -----~~~~~~l~~~l~~-----~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 285 -----VKDIKKFKETLAR-----DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred -----hHHHHHHHHHHHh-----CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH
Confidence 1112333343432 346899999766442 2223344455554432 224577899998763 333333
Q ss_pred H
Q 015093 233 K 233 (413)
Q Consensus 233 ~ 233 (413)
.
T Consensus 355 ~ 355 (432)
T PRK12724 355 A 355 (432)
T ss_pred H
Confidence 3
No 314
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.048 Score=48.58 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=42.5
Q ss_pred ccCccCCC-CCHHHHHHHHh--CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc
Q 015093 39 YDSFDSMG-LKENLLRGIYA--YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA 115 (413)
Q Consensus 39 ~~~~~~~~-l~~~~~~~l~~--~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~ 115 (413)
-.+|+..| |.+++.+.-.. .....|--++.-.++ ..+.+|+.||+|+|||+.+ .....+.+ -.++=+
T Consensus 147 dvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~---PPKGVLLYGPPGTGKTLLA------kAVA~~T~-AtFIrv 216 (406)
T COG1222 147 DVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGID---PPKGVLLYGPPGTGKTLLA------KAVANQTD-ATFIRV 216 (406)
T ss_pred CCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCC---CCCceEeeCCCCCcHHHHH------HHHHhccC-ceEEEe
Confidence 34455553 66666554443 334445555555553 3578999999999999875 22233334 334444
Q ss_pred ccHHHHH
Q 015093 116 PTRELAQ 122 (413)
Q Consensus 116 P~~~l~~ 122 (413)
.-.+|++
T Consensus 217 vgSElVq 223 (406)
T COG1222 217 VGSELVQ 223 (406)
T ss_pred ccHHHHH
Confidence 4556664
No 315
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.21 E-value=0.027 Score=54.60 Aligned_cols=39 Identities=8% Similarity=0.268 Sum_probs=26.5
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
...+++||||+|.+... -...+.+.+...+....+|+.|
T Consensus 118 ~~~kVvIIDEad~ls~~-a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHH-HHHHHHHHHhCCCCCEEEEEEe
Confidence 34689999999987543 2445666666666666666655
No 316
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.21 E-value=0.035 Score=53.97 Aligned_cols=102 Identities=14% Similarity=0.194 Sum_probs=55.9
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcC
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAG 158 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
.++|.|++|+|||... .++...+.....+.+++++.. ..+.++....+.. +
T Consensus 316 pL~LyG~sGsGKTHLL-~AIa~~a~~~~~g~~V~Yita-eef~~el~~al~~-----~---------------------- 366 (617)
T PRK14086 316 PLFIYGESGLGKTHLL-HAIGHYARRLYPGTRVRYVSS-EEFTNEFINSIRD-----G---------------------- 366 (617)
T ss_pred cEEEECCCCCCHHHHH-HHHHHHHHHhCCCCeEEEeeH-HHHHHHHHHHHHh-----c----------------------
Confidence 3899999999999654 344444433333446666654 4455443332221 0
Q ss_pred CcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC-cHHHHHHHHhhCCC-CceEEEEeeeC
Q 015093 159 VHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-FKDQIYDIFQHLPG-KIQVGVFSATM 223 (413)
Q Consensus 159 ~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~~~~-~~~~i~lSAT~ 223 (413)
..+.|... +..+++|+|||+|.+.... ....+..+++.+.. +.++| +|+..
T Consensus 367 ------~~~~f~~~-------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~II-ITSd~ 419 (617)
T PRK14086 367 ------KGDSFRRR-------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIV-LSSDR 419 (617)
T ss_pred ------cHHHHHHH-------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEE-EecCC
Confidence 01112211 1236899999999875433 23455566655544 34555 45444
No 317
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.20 E-value=0.029 Score=62.59 Aligned_cols=62 Identities=29% Similarity=0.296 Sum_probs=44.2
Q ss_pred CCCcHHHHhhhhhhhCCC--cEEEeCCCCCchhHHHH---HHHHHhcccccCceeEEEEcccHHHHHHH
Q 015093 61 EKPSAIQQRGIVPFCKGL--DVIQQAQSGTGKTATFC---SGILQQLDYESLQCQALVLAPTRELAQQI 124 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~--~~lv~~~tGsGKT~~~~---~~i~~~l~~~~~~~~~lvl~P~~~l~~q~ 124 (413)
..+++-|..++..++.+. -++|.|+.|+|||...- -++.+.+.. .+.+++.+.||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~--~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES--EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh--cCCeEEEEeChHHHHHHH
Confidence 379999999999988764 47889999999997651 223333322 245788899996655443
No 318
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.19 E-value=0.027 Score=52.28 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=27.1
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
...+++||||+|.+... ....+.+.+..-+.+..+|+.|.++
T Consensus 116 ~~~kViiIDead~m~~~-aanaLLk~LEep~~~~~fIL~a~~~ 157 (394)
T PRK07940 116 GRWRIVVIEDADRLTER-AANALLKAVEEPPPRTVWLLCAPSP 157 (394)
T ss_pred CCcEEEEEechhhcCHH-HHHHHHHHhhcCCCCCeEEEEECCh
Confidence 34689999999998433 3455666666666565555444443
No 319
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.19 E-value=0.066 Score=50.32 Aligned_cols=129 Identities=13% Similarity=0.120 Sum_probs=60.3
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcC
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAG 158 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
.++++|++|+|||.++...+. .+... +.+++++..-.-. ....+.++.++...++.+.......
T Consensus 97 vI~lvG~~GsGKTTtaakLA~-~L~~~--g~kV~lV~~D~~R-~aa~eQL~~la~~~gvp~~~~~~~~------------ 160 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLAR-YFKKK--GLKVGLVAADTYR-PAAYDQLKQLAEKIGVPFYGDPDNK------------ 160 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHH-HHHHc--CCeEEEecCCCCC-HHHHHHHHHHHHHcCCcEEecCCcc------------
Confidence 488899999999988754443 33322 2355554432111 1123334444433344322111000
Q ss_pred CcEEEeChHH-HHHHHHcCCCCCCCccEEEEccchhhhc-cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHH
Q 015093 159 VHVVVGTPGR-VFDMLRRQSLRPDYIRMFVLDEADEMLS-RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRK 233 (413)
Q Consensus 159 ~~Iii~T~~~-l~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~ 233 (413)
.+.. +...+.... ..++||+|.+-+... ...-..+..+.....+..-++.++|+...+.....+.
T Consensus 161 ------d~~~i~~~al~~~~----~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~ 227 (437)
T PRK00771 161 ------DAVEIAKEGLEKFK----KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKA 227 (437)
T ss_pred ------CHHHHHHHHHHHhh----cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHH
Confidence 1111 122222211 127889998854321 1222334444444444555677777776544444444
No 320
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.18 E-value=0.043 Score=51.40 Aligned_cols=23 Identities=22% Similarity=0.017 Sum_probs=17.9
Q ss_pred EEEeCCCCCchhHHHHHHHHHhc
Q 015093 80 VIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l 102 (413)
.|++||+|+|||.++...+-...
T Consensus 41 ~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 41 YIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 78999999999988765544443
No 321
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.15 E-value=0.051 Score=52.81 Aligned_cols=133 Identities=12% Similarity=0.105 Sum_probs=77.5
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhccc--CceEEEEECCcchHHHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM--GVKVHACVGGTSVREDQRIL 155 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (413)
+-.++..|--.|||+... +++..+.....+.+++|+.|.+..++..++++..+.... +..+....| ... -. .+
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I--~i-~f 329 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI--SF-SF 329 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE--EE-Ee
Confidence 447889999999998765 444433333335699999999999999999988765422 111212222 110 00 00
Q ss_pred hcC--CcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCC
Q 015093 156 SAG--VHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 156 ~~~--~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
.++ ..|.+.+ ........-..++++|+|||+.+....+...+ ..+... ++++|.+|.|-+
T Consensus 330 ~nG~kstI~FaS------arntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~~~--n~k~I~ISS~Ns 391 (738)
T PHA03368 330 PDGSRSTIVFAS------SHNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLNQT--NCKIIFVSSTNT 391 (738)
T ss_pred cCCCccEEEEEe------ccCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHhcc--CccEEEEecCCC
Confidence 111 1333332 11123344456899999999987543333222 222222 778999998864
No 322
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.15 E-value=0.049 Score=51.67 Aligned_cols=22 Identities=27% Similarity=0.199 Sum_probs=17.2
Q ss_pred CCcEEEeCCCCCchhHHHHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGI 98 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i 98 (413)
++-+.+.||||+|||.+....+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 4458899999999998865444
No 323
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.14 E-value=0.019 Score=48.00 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=14.4
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
.++++.||+|.|||..+
T Consensus 51 ~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp -EEEEESSTTSSHHHHH
T ss_pred ceEEEECCCccchhHHH
Confidence 35899999999999765
No 324
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.13 E-value=0.024 Score=53.94 Aligned_cols=19 Identities=32% Similarity=0.190 Sum_probs=15.6
Q ss_pred EEEeCCCCCchhHHHHHHH
Q 015093 80 VIQQAQSGTGKTATFCSGI 98 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i 98 (413)
.++.||+|+|||..+-+.+
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA 57 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILA 57 (472)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6999999999998775433
No 325
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.13 E-value=0.12 Score=51.66 Aligned_cols=130 Identities=15% Similarity=0.070 Sum_probs=65.5
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSA 157 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
+-+.+.||||+|||.+....+.... ....+.++.+++.-.... -..+.++.++...++.+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~-~~~G~kkV~lit~Dt~Ri-gA~eQL~~~a~~~gvpv------------------ 245 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCV-AREGADQLALLTTDSFRI-GALEQLRIYGRILGVPV------------------ 245 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHH-HHcCCCeEEEecCcccch-HHHHHHHHHHHhCCCCc------------------
Confidence 4478999999999987644333221 222222444444322221 12333444444333322
Q ss_pred CCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc-CcHHHHHHHHhhCCCCceEEEEeeeCChhH-HHHHHHh
Q 015093 158 GVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR-GFKDQIYDIFQHLPGKIQVGVFSATMPPEA-LEITRKF 234 (413)
Q Consensus 158 ~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~-~~~~~~~ 234 (413)
..+.+++.+...+... .+.++|+||=+-+.... .....+..+.....+...++.++||..... .+....|
T Consensus 246 ---~~~~~~~~l~~al~~~----~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 246 ---HAVKDAADLRFALAAL----GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred ---cccCCHHHHHHHHHHh----cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 1233566665555532 23578999988765322 122333333333334456778888876433 3344444
No 326
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.12 E-value=0.032 Score=54.49 Aligned_cols=22 Identities=23% Similarity=0.090 Sum_probs=17.0
Q ss_pred EEEeCCCCCchhHHHHHHHHHh
Q 015093 80 VIQQAQSGTGKTATFCSGILQQ 101 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~ 101 (413)
.|++||.|+|||.++-..+-..
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6889999999998875544433
No 327
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.08 E-value=0.027 Score=54.14 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=16.0
Q ss_pred EEEeCCCCCchhHHHHHHHH
Q 015093 80 VIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~ 99 (413)
.++.||+|+|||.++...+.
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~ 58 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAM 58 (504)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 59999999999988754443
No 328
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.07 E-value=0.077 Score=48.40 Aligned_cols=119 Identities=15% Similarity=0.130 Sum_probs=59.3
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc-ccHH--HHHHHHHHHHHhhcccCceEEEEECCcchHHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA-PTRE--LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQR 153 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~-P~~~--l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (413)
++.+++.||+|+|||......+... ... +.++.+++ .+.- -+.| ++.++...++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l-~~~--g~~V~lItaDtyR~gAveQ----Lk~yae~lgvpv~------------- 265 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQL-LKQ--NRTVGFITTDTFRSGAVEQ----FQGYADKLDVELI------------- 265 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEEeCCccCccHHHH----HHHHhhcCCCCEE-------------
Confidence 4558899999999998765544432 222 22444444 3321 2334 3444333333221
Q ss_pred HHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc-cCcHHHHHHHHhhCCCCceEEEEeeeCC
Q 015093 154 ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS-RGFKDQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 154 ~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
...+|+.+...+.... ....+++|++|=+-+... ......+..+........-++.+||+..
T Consensus 266 --------~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~ 328 (407)
T PRK12726 266 --------VATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK 328 (407)
T ss_pred --------ecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc
Confidence 2235555554443211 112368999998765431 1223334444444433333556677654
No 329
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.05 E-value=0.059 Score=44.67 Aligned_cols=39 Identities=10% Similarity=0.228 Sum_probs=24.7
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
....++|+||+|.+... ....+.+.+...++...+++++
T Consensus 95 ~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEA-AANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred CCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEE
Confidence 34689999999988533 2445556666655555555443
No 330
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.02 E-value=0.03 Score=53.65 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=16.9
Q ss_pred cEEEeCCCCCchhHHHHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~ 99 (413)
..++.||.|+|||.++-+.+.
T Consensus 45 a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999988754443
No 331
>PRK04195 replication factor C large subunit; Provisional
Probab=95.98 E-value=0.038 Score=53.20 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=15.8
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
.+.+++.||+|+|||..+-
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3569999999999997753
No 332
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.97 E-value=0.034 Score=52.61 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=25.4
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQ 122 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~ 122 (413)
+.+++.||+|+|||..+- ++...+... +.+++++.. ..+..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~--~~~v~yi~~-~~f~~ 182 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRES--GGKILYVRS-ELFTE 182 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHc--CCCEEEeeH-HHHHH
Confidence 458999999999996643 444444332 346777654 34433
No 333
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.95 E-value=0.039 Score=49.90 Aligned_cols=146 Identities=12% Similarity=0.068 Sum_probs=72.2
Q ss_pred CcHHHHhhhhhhhC--C---CcEEEeCCCCCchhHHHHHHHHHhcccccC-ceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 63 PSAIQQRGIVPFCK--G---LDVIQQAQSGTGKTATFCSGILQQLDYESL-QCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 63 ~~~~Q~~~~~~~~~--~---~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~-~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
+||||...+..+.. + ...++.||.|.|||..+...+...++.... +....=-| ..++.+.....
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C----------~~C~~~~~~~H 71 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGEC----------MSCHLFGQGSH 71 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcC----------HHHHHHhcCCC
Confidence 36777777777664 2 237899999999998876555444433221 10111111 12333332222
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceE
Q 015093 137 VKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQV 216 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 216 (413)
-.+..+.......... .....|-|-....+.+.+...+.. ...+++|+|++|.+ +......+.+++...+....+
T Consensus 72 pD~~~~~p~~~~~~~g---~~~~~I~id~iR~l~~~~~~~p~~-~~~kV~iiEp~~~L-d~~a~naLLk~LEep~~~~~~ 146 (325)
T PRK08699 72 PDFYEITPLSDEPENG---RKLLQIKIDAVREIIDNVYLTSVR-GGLRVILIHPAESM-NLQAANSLLKVLEEPPPQVVF 146 (325)
T ss_pred CCEEEEeccccccccc---ccCCCcCHHHHHHHHHHHhhCccc-CCceEEEEechhhC-CHHHHHHHHHHHHhCcCCCEE
Confidence 2233333211000000 000123222223333333333322 34689999999976 444567777788877666555
Q ss_pred EEEeeeC
Q 015093 217 GVFSATM 223 (413)
Q Consensus 217 i~lSAT~ 223 (413)
|++|-.+
T Consensus 147 Ilvth~~ 153 (325)
T PRK08699 147 LLVSHAA 153 (325)
T ss_pred EEEeCCh
Confidence 6544443
No 334
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.94 E-value=0.17 Score=47.36 Aligned_cols=58 Identities=10% Similarity=0.038 Sum_probs=30.4
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEE
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVH 140 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
-+.++|++|+|||.+..-.+.. +. .. +.++++++.-.... ...++++.++...++.+.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~-l~-~~-G~kV~lV~~D~~R~-aA~eQLk~~a~~~~vp~~ 159 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYY-YQ-RK-GFKPCLVCADTFRA-GAFDQLKQNATKARIPFY 159 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HH-HC-CCCEEEEcCcccch-hHHHHHHHHhhccCCeEE
Confidence 3788999999999876544432 22 22 33555555422111 122334444444455443
No 335
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.89 E-value=0.038 Score=51.24 Aligned_cols=70 Identities=14% Similarity=0.101 Sum_probs=53.1
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhh
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~ 132 (413)
..+-..|+++.-..-.|.. .|.+=.|||||....+-+.. +..+++..++++.+-|+.|+.++.+.+.+++
T Consensus 161 anfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~-lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 161 ANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAE-LHSKNPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred hcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHH-HhcCCCCceEEEEeehHHHHHHHHHHHHHHH
Confidence 3455678877766666665 78889999999876554443 4455566799999999999999988888776
No 336
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.88 E-value=0.038 Score=51.05 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=14.8
Q ss_pred cEEEeCCCCCchhHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~ 96 (413)
..++.||+|+|||..+..
T Consensus 38 ~~Ll~G~~G~GKt~~a~~ 55 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARI 55 (355)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999977643
No 337
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.88 E-value=0.032 Score=54.80 Aligned_cols=121 Identities=11% Similarity=0.083 Sum_probs=57.7
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCC
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGV 159 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (413)
.|++||.|.|||.++...+-...+....+ ..-+.-++..-+. ....|+.+.......+..+.+....
T Consensus 41 ~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~-~~~~~~~~~~~Cg-~C~sC~~~~~g~~~n~~~~d~~s~~----------- 107 (620)
T PRK14954 41 YIFSGLRGVGKTTAARVFAKAVNCQRMID-DPVYLQEVTEPCG-ECESCRDFDAGTSLNISEFDAASNN----------- 107 (620)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCcCC-ccccccccCCCCc-cCHHHHHHhccCCCCeEEecccccC-----------
Confidence 78999999999988865554443322110 0000000001011 1123444444344444444432211
Q ss_pred cEEEeChHHHHHH---HHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 160 HVVVGTPGRVFDM---LRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 160 ~Iii~T~~~l~~~---~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..+.+.+. +...++ ....+++||||+|.+... -...+.+.+...+...-+|+++
T Consensus 108 -----~vd~Ir~l~e~~~~~P~-~~~~KVvIIdEad~Lt~~-a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 108 -----SVDDIRQLRENVRYGPQ-KGRYRVYIIDEVHMLSTA-AFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred -----CHHHHHHHHHHHHhhhh-cCCCEEEEEeChhhcCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 01222222 222222 234689999999988433 2445556666665555555544
No 338
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.87 E-value=0.071 Score=46.22 Aligned_cols=40 Identities=20% Similarity=0.043 Sum_probs=28.2
Q ss_pred hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
..|.-++|.|++|+|||...+..+...+... +.++++++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeC
Confidence 3466789999999999987665555544331 347888874
No 339
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.87 E-value=0.038 Score=53.10 Aligned_cols=39 Identities=10% Similarity=0.290 Sum_probs=27.6
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
...+++|+||+|.+... ....+.+.+...++...+++.+
T Consensus 116 ~~~KVvIIDEad~Lt~~-A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKE-AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCHH-HHHHHHHHHhhcCCceEEEEEE
Confidence 34789999999987432 3556677777777777666555
No 340
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.80 E-value=0.018 Score=51.71 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=37.8
Q ss_pred CcHHHHhhhhhhhC-CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 63 PSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 63 ~~~~Q~~~~~~~~~-~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
+.+.|...+..+.. +++++|+|+||||||... .+++..+.......+++.+=...++
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCceEEEecCCccc
Confidence 55677777666544 567999999999999764 4555554332334477776666665
No 341
>PRK05973 replicative DNA helicase; Provisional
Probab=95.79 E-value=0.026 Score=48.27 Aligned_cols=84 Identities=20% Similarity=0.188 Sum_probs=52.6
Q ss_pred cCCCCCHHHHHHHHhCCCC----------CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEE
Q 015093 43 DSMGLKENLLRGIYAYGFE----------KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQAL 112 (413)
Q Consensus 43 ~~~~l~~~~~~~l~~~~~~----------~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~l 112 (413)
.+.++++.+.....+.||. .++| ..+..--+..|.-++|.|++|+|||..++..+.+.... +.+++
T Consensus 21 ~~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p-~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge~vl 96 (237)
T PRK05973 21 QNIPLHEALDRIAAEEGFSSWSLLAAKAAATTP-AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---GRTGV 96 (237)
T ss_pred cCCcHHHHHHHHHHHhccchHHHHHHhccCCCC-HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEE
Confidence 3456666666666666664 2333 22233344456679999999999998877666555433 34677
Q ss_pred EEcccHHHHHHHHHHHHHh
Q 015093 113 VLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 113 vl~P~~~l~~q~~~~~~~~ 131 (413)
|++-- +-.+|..+.+.++
T Consensus 97 yfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 97 FFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred EEEEe-CCHHHHHHHHHHc
Confidence 77643 3356677777665
No 342
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.79 E-value=0.017 Score=51.92 Aligned_cols=65 Identities=17% Similarity=0.302 Sum_probs=40.8
Q ss_pred HHHHhCCCCCCcHHHHhhhhh-hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 53 RGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 53 ~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
+.+.+.|. +.+.|.+.+.. +..+++++|.|+||||||.. +.+++..+.......+++++-.+.++
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 34444444 45667777765 44567899999999999955 34444443222233477777776665
No 343
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.77 E-value=0.024 Score=52.09 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=26.5
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
.+..++|+||||||||... ..++..+.......+++.+=...+
T Consensus 148 ~~GlilI~G~TGSGKTT~l-~al~~~i~~~~~~~~IvtiEdp~E 190 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA-ASIYQHCGETYPDRKIVTYEDPIE 190 (372)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHHhcCCCceEEEEecCch
Confidence 3456899999999999764 555555543332335555533333
No 344
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.75 E-value=0.041 Score=49.06 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=28.9
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
+.++++|+|+|||..+-+.+ .-. +....+.+=+..+.+-.++....+++
T Consensus 164 SmIlWGppG~GKTtlArlia--~ts-k~~SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIA--STS-KKHSYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred ceEEecCCCCchHHHHHHHH--hhc-CCCceEEEEEeccccchHHHHHHHHH
Confidence 48999999999997652222 111 12223566666666666555554443
No 345
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.74 E-value=0.035 Score=54.13 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=52.3
Q ss_pred CCcHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHH-HHHHHhhc
Q 015093 62 KPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIE-KVMRALGD 133 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~-~~~~~~~~ 133 (413)
..+|||.+..+.+... +.+.+..++-+|||.+.+..+...+.... ..++++.||...+.++. ..+..+..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P--~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDP--GPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCC--CCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 6789999999988775 46999999999999976554444333332 48999999999998875 55555443
No 346
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.67 E-value=0.069 Score=53.78 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=66.3
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhh----CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-ccccCCCCCCCCEEE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRS----RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 352 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d~~~~~~vi 352 (413)
.+.+++|.+|++..|.+.++.+++ .++.+..++|+++..+|.+.++.+.+|+.+|+|+|. .+...+.++++..||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 456899999999999888777765 368899999999999999999999999999999996 555667788888887
Q ss_pred EcC
Q 015093 353 NYD 355 (413)
Q Consensus 353 ~~~ 355 (413)
+-.
T Consensus 389 IDE 391 (681)
T PRK10917 389 IDE 391 (681)
T ss_pred Eec
Confidence 644
No 347
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=95.64 E-value=0.037 Score=49.07 Aligned_cols=56 Identities=16% Similarity=0.084 Sum_probs=44.5
Q ss_pred CCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 60 ~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
+...++-|..-++++.++.-++-.+|.|+|||+.+...+.+.+....-. +++..=|
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~-rIiLtRP 181 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVR-RIILTRP 181 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccc-eeeecCc
Confidence 4567888999999998888889999999999988877777777665543 6666666
No 348
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.61 E-value=0.029 Score=50.13 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=36.9
Q ss_pred CcHHHHhhhhhhh-CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 63 PSAIQQRGIVPFC-KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 63 ~~~~Q~~~~~~~~-~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
+.+-|...+..+. .+++++|+|+||||||... .+++..+.......+++++=...++
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCceEEEECCchhh
Confidence 3444555555544 4678999999999999764 4555555433234477777776665
No 349
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.61 E-value=0.057 Score=50.07 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=17.8
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l 102 (413)
.+++|.||+|+|||.+. ..++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 56999999999999765 3344333
No 350
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.61 E-value=0.15 Score=51.28 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=63.7
Q ss_pred CCcEEEEEcCcccHHHHHHHHhhC-CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRSR-DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 356 (413)
++++||.+|+++.+.++.+.|++. +..+..+||+++..+|.+......+|+.+|+|+|...- -..+.++..+|..+.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEECC
Confidence 568999999999999999999874 67899999999999999998889999999999997332 245667777776553
No 351
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.60 E-value=0.055 Score=50.50 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=26.5
Q ss_pred CcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHH
Q 015093 63 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 63 ~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~ 95 (413)
+.......+..+..++++++.+|+|+|||..+-
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 444556667777789999999999999998764
No 352
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.60 E-value=0.074 Score=50.46 Aligned_cols=51 Identities=22% Similarity=0.195 Sum_probs=33.5
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
|.-+++.+++|+|||...+..+..... .+.+++|+.-. +-..|......++
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~---~g~~vlYvs~E-es~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAA---AGGKVLYVSGE-ESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEcc-ccHHHHHHHHHHc
Confidence 345899999999999876555444332 23478888754 4455666555554
No 353
>PHA00729 NTP-binding motif containing protein
Probab=95.59 E-value=0.11 Score=43.85 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=14.9
Q ss_pred cEEEeCCCCCchhHHHH
Q 015093 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~ 95 (413)
++++.|++|+|||..+.
T Consensus 19 nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 19 SAVIFGKQGSGKTTYAL 35 (226)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 69999999999997663
No 354
>PF05729 NACHT: NACHT domain
Probab=95.58 E-value=0.091 Score=42.28 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=15.4
Q ss_pred cEEEeCCCCCchhHHHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCSGI 98 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i 98 (413)
-++|.|++|+|||......+
T Consensus 2 ~l~I~G~~G~GKStll~~~~ 21 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLA 21 (166)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 37899999999997654333
No 355
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.57 E-value=0.076 Score=53.36 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.2
Q ss_pred CcEEEeCCCCCchhHHHH
Q 015093 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~ 95 (413)
.++++.||+|+|||..+-
T Consensus 53 ~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 53 GSLILYGPPGVGKTTLAR 70 (725)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 369999999999997663
No 356
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.57 E-value=0.095 Score=49.61 Aligned_cols=131 Identities=16% Similarity=0.101 Sum_probs=63.5
Q ss_pred CCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceE
Q 015093 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKV 139 (413)
Q Consensus 60 ~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~ 139 (413)
+++-.+--.+.+.-+..|.-++|.|+||+|||..++..+...... .+.++++++. ..-..|+..++-.... ++..
T Consensus 177 i~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~--~g~~v~~fSl-Em~~~~l~~Rl~~~~~--~v~~ 251 (421)
T TIGR03600 177 LSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALR--EGKPVLFFSL-EMSAEQLGERLLASKS--GINT 251 (421)
T ss_pred eeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEEC-CCCHHHHHHHHHHHHc--CCCH
Confidence 333333333334344456668999999999998776555444322 1336777763 3345555444433221 2222
Q ss_pred EEEE-CCcchHHHHHHH-----hcCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 140 HACV-GGTSVREDQRIL-----SAGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 140 ~~~~-~~~~~~~~~~~~-----~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
..+. |......+.+.. ....++.|. |.+.+...+++.......+++||||=.|.+.
T Consensus 252 ~~~~~~~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~ 318 (421)
T TIGR03600 252 GNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMA 318 (421)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccC
Confidence 2221 222211211111 112345553 3444444443221112247899999888765
No 357
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.56 E-value=0.018 Score=53.88 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=28.0
Q ss_pred cHHHHhhhhhhhCCCc--EEEeCCCCCchhHHHHHHHHHhcccc
Q 015093 64 SAIQQRGIVPFCKGLD--VIQQAQSGTGKTATFCSGILQQLDYE 105 (413)
Q Consensus 64 ~~~Q~~~~~~~~~~~~--~lv~~~tGsGKT~~~~~~i~~~l~~~ 105 (413)
.+.|...+..+..... ++|.||||||||.+ +..++..+...
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 4556666656555433 88999999999976 46666665443
No 358
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.55 E-value=0.024 Score=50.33 Aligned_cols=70 Identities=14% Similarity=0.105 Sum_probs=46.8
Q ss_pred CHHHHHHHHhCCCCCCcHHHHhhhhhhhCCC-cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHH
Q 015093 48 KENLLRGIYAYGFEKPSAIQQRGIVPFCKGL-DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELA 121 (413)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~-~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~ 121 (413)
++.......-..+..+.+-|-..+..+...+ ++++++.||||||... -++...... ..+++.+=.+.+|.
T Consensus 143 ~k~~ltl~dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlL-Nal~~~i~~---~eRvItiEDtaELq 213 (355)
T COG4962 143 PKIKLTLLDLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLL-NALSGFIDS---DERVITIEDTAELQ 213 (355)
T ss_pred ccccccHHHHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHH-HHHHhcCCC---cccEEEEeehhhhc
Confidence 3333333344455678889999998887766 8999999999999653 333333322 22788887776664
No 359
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.55 E-value=0.076 Score=48.97 Aligned_cols=44 Identities=14% Similarity=0.300 Sum_probs=28.9
Q ss_pred CccEEEEccchhhhcc-CcHHHHHHHHhhCCCCc-eEEEEeeeCCh
Q 015093 182 YIRMFVLDEADEMLSR-GFKDQIYDIFQHLPGKI-QVGVFSATMPP 225 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~-~~i~lSAT~~~ 225 (413)
+++++++|+++.+... .....+..+++.+.... ++++.|-.+|.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~ 220 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPK 220 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCch
Confidence 3789999999987655 34556667777665544 55555544443
No 360
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.53 E-value=0.064 Score=52.35 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=22.3
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEE
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGV 218 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (413)
...+++|+||+|.+... ....+.+.+...+....+++
T Consensus 118 ~~~KVvIIDEa~~Ls~~-a~naLLK~LEepp~~~vfI~ 154 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNS-AFNALLKTIEEPPPYIVFIF 154 (563)
T ss_pred CCCEEEEEEChhhcCHH-HHHHHHHhhccCCCCEEEEE
Confidence 44689999999987432 23445555555444444443
No 361
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.51 E-value=0.14 Score=45.90 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=18.6
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcc
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~ 103 (413)
++.+++.||+|+|||..+. ++...+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 4569999999999997654 3333333
No 362
>PRK06904 replicative DNA helicase; Validated
Probab=95.51 E-value=0.17 Score=48.41 Aligned_cols=117 Identities=19% Similarity=0.086 Sum_probs=59.9
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEE-EC-CcchHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHAC-VG-GTSVRED 151 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~ 151 (413)
+..|.-++|.|.||.|||..++-.+...... . +..+++.+. ..-..|+..++-.... ++....+ .| ..+...+
T Consensus 218 l~~G~LiiIaarPg~GKTafalnia~~~a~~-~-g~~Vl~fSl-EMs~~ql~~Rlla~~s--~v~~~~i~~g~~l~~~e~ 292 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMNLCENAAMA-S-EKPVLVFSL-EMPAEQIMMRMLASLS--RVDQTKIRTGQNLDQQDW 292 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHHHHHHHHHHHh-c-CCeEEEEec-cCCHHHHHHHHHHhhC--CCCHHHhccCCCCCHHHH
Confidence 4445568999999999998664444333222 1 335666654 4556666665544322 2222222 22 2222222
Q ss_pred HHH------HhcCCcEEE-----eChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 152 QRI------LSAGVHVVV-----GTPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 152 ~~~------~~~~~~Iii-----~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
.+. +....++.| .|+..+....++.......+++||||=.+.+.
T Consensus 293 ~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 293 AKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 211 122344666 35555554443211111247899999888764
No 363
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.51 E-value=0.067 Score=52.84 Aligned_cols=25 Identities=20% Similarity=0.037 Sum_probs=18.5
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l 102 (413)
...|+.||.|+|||..+...+-...
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhc
Confidence 3479999999999988755444433
No 364
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.50 E-value=0.061 Score=50.72 Aligned_cols=18 Identities=33% Similarity=0.309 Sum_probs=15.1
Q ss_pred CcEEEeCCCCCchhHHHH
Q 015093 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~ 95 (413)
.++++.||+|+|||..+-
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358999999999997763
No 365
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.50 E-value=0.18 Score=40.20 Aligned_cols=50 Identities=20% Similarity=0.366 Sum_probs=36.3
Q ss_pred CCccEEEEccchhhhccC--cHHHHHHHHhhCCCCceEEEEeeeCChhHHHH
Q 015093 181 DYIRMFVLDEADEMLSRG--FKDQIYDIFQHLPGKIQVGVFSATMPPEALEI 230 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~ 230 (413)
..++++|+||+-.....+ -...+..+++..|....+|+.+-.+++.+.+.
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~ 145 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEA 145 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 457999999999775544 34667788888888888887666666555443
No 366
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.44 E-value=0.076 Score=46.59 Aligned_cols=145 Identities=19% Similarity=0.132 Sum_probs=72.7
Q ss_pred hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECC-cchHHHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGG-TSVREDQR 153 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 153 (413)
..|.-++|.|+||.|||..++-.+.+.+... +..+++++.--. ..+...++-.... ++....+..+ ........
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~--~~~vly~SlEm~-~~~l~~R~la~~s--~v~~~~i~~g~l~~~e~~~ 91 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNG--GYPVLYFSLEMS-EEELAARLLARLS--GVPYNKIRSGDLSDEEFER 91 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTT--SSEEEEEESSS--HHHHHHHHHHHHH--TSTHHHHHCCGCHHHHHHH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhc--CCeEEEEcCCCC-HHHHHHHHHHHhh--cchhhhhhccccCHHHHHH
Confidence 3455689999999999988776666655443 247888876322 3333333322221 2211111112 11111111
Q ss_pred HH-----hcCCcEEE-e----ChHHHHHHHHcCCCCCCCccEEEEccchhhhcc----CcHHHHHHHHhhCC-----CCc
Q 015093 154 IL-----SAGVHVVV-G----TPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR----GFKDQIYDIFQHLP-----GKI 214 (413)
Q Consensus 154 ~~-----~~~~~Iii-~----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~----~~~~~~~~~~~~~~-----~~~ 214 (413)
.. .....+++ . |++.+...+.........+++||||=.|.+... +....+..+.+.+. .++
T Consensus 92 ~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i 171 (259)
T PF03796_consen 92 LQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNI 171 (259)
T ss_dssp HHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 11 11234444 2 445555554432222245789999999987653 23333333322221 167
Q ss_pred eEEEEeeeCC
Q 015093 215 QVGVFSATMP 224 (413)
Q Consensus 215 ~~i~lSAT~~ 224 (413)
.++++|....
T Consensus 172 ~vi~~sQlnr 181 (259)
T PF03796_consen 172 PVIALSQLNR 181 (259)
T ss_dssp EEEEEEEBSG
T ss_pred eEEEccccCh
Confidence 7887777653
No 367
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.29 Score=45.09 Aligned_cols=27 Identities=33% Similarity=0.462 Sum_probs=19.1
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYE 105 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~ 105 (413)
.++++.|+||+|||.+.- -++..+...
T Consensus 43 ~n~~iyG~~GTGKT~~~~-~v~~~l~~~ 69 (366)
T COG1474 43 SNIIIYGPTGTGKTATVK-FVMEELEES 69 (366)
T ss_pred ccEEEECCCCCCHhHHHH-HHHHHHHhh
Confidence 359999999999998764 344444443
No 368
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.39 E-value=0.11 Score=46.79 Aligned_cols=61 Identities=10% Similarity=0.170 Sum_probs=38.7
Q ss_pred cEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 160 HVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 160 ~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
.|-|-....+.+.+...+.. ...+++|+|++|.+. ..-...+.+.+..-| +..++++|..+
T Consensus 103 ~I~id~ir~i~~~l~~~p~~-~~~kVvII~~ae~m~-~~aaNaLLK~LEEPp-~~~fILi~~~~ 163 (314)
T PRK07399 103 QIRLEQIREIKRFLSRPPLE-APRKVVVIEDAETMN-EAAANALLKTLEEPG-NGTLILIAPSP 163 (314)
T ss_pred cCcHHHHHHHHHHHccCccc-CCceEEEEEchhhcC-HHHHHHHHHHHhCCC-CCeEEEEECCh
Confidence 34444555555555555443 347999999999873 334566777777777 56566555544
No 369
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.38 E-value=0.11 Score=47.28 Aligned_cols=42 Identities=10% Similarity=0.309 Sum_probs=29.2
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
...+++||||+|.+... ....+.+.+..-|+...++++|..+
T Consensus 109 ~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t~~~ 150 (329)
T PRK08058 109 SNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLTENK 150 (329)
T ss_pred cCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEeCCh
Confidence 34689999999987433 4566777777777777666644433
No 370
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.37 E-value=0.043 Score=48.66 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=17.0
Q ss_pred CcEEEeCCCCCchhHHHHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~ 99 (413)
+.+++.||||+|||.+....+.
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999987654443
No 371
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.37 E-value=0.29 Score=42.14 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=34.7
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
|.-+++.+++|+|||..+...+...+.. +.+++++.-... ..+..+.+.++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~---g~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ---GKKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC---CCEEEEEEcCCC-HHHHHHHHHHC
Confidence 5568999999999998776655554432 347777776433 45566666665
No 372
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.36 E-value=0.1 Score=51.58 Aligned_cols=37 Identities=8% Similarity=0.210 Sum_probs=22.3
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEE
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGV 218 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (413)
...+++||||+|.+... -...+.+.+...+....+|+
T Consensus 119 ~~~kVvIIDEa~~L~~~-a~naLLk~LEepp~~tv~Il 155 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTA-AFNALLKTLEEPPPHAIFIL 155 (585)
T ss_pred CCeEEEEEeChHhCCHH-HHHHHHHHHhcCCCCeEEEE
Confidence 34689999999987432 23444555555554444443
No 373
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.35 E-value=0.084 Score=43.24 Aligned_cols=141 Identities=17% Similarity=0.202 Sum_probs=71.6
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHH-HHHHHHHHHhhcccCceEEEEECCcchHHHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELA-QQIEKVMRALGDYMGVKVHACVGGTSVREDQRI 154 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~-~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (413)
....+.+..++|.|||.+++-.++..+..+. +++++-=.+.-. ..-...++++ .++.......+.....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~---~V~ivQFlKg~~~~GE~~~l~~l---~~v~~~~~g~~~~~~~---- 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGK---KVGVVQFIKGAWSTGERNLLEFG---GGVEFHVMGTGFTWET---- 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCC---eEEEEEEecCCCccCHHHHHhcC---CCcEEEECCCCCcccC----
Confidence 4567999999999999998877776655443 666654333210 0111222222 1222222111111000
Q ss_pred HhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCc--HHHHHHHHhhCCCCceEEEEeeeCChhHHH
Q 015093 155 LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGF--KDQIYDIFQHLPGKIQVGVFSATMPPEALE 229 (413)
Q Consensus 155 ~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~ 229 (413)
....--............. .+....+++||+||+-...+.++ ...+..++...|....+|+..-.+++.+.+
T Consensus 91 --~~~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie 164 (191)
T PRK05986 91 --QDRERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIE 164 (191)
T ss_pred --CCcHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 0000000001111111111 12234479999999998776553 456777888888777777555555555444
No 374
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.33 E-value=0.15 Score=53.55 Aligned_cols=42 Identities=17% Similarity=0.338 Sum_probs=33.0
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCC
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
--+||+|++|.+.+......+..+++..+.+..+|+.|-+.+
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 358999999988655556678888888888888888887743
No 375
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.28 E-value=0.058 Score=54.48 Aligned_cols=73 Identities=21% Similarity=0.256 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCC-----CeeEe-ecCCCCHHHHHHHHHHHhcCCCeEEEEeCc
Q 015093 266 KLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRD-----HTVSA-THGDMDQNSRDIIMREFRSGSSRVLITTDL 338 (413)
Q Consensus 266 ~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~-----~~~~~-~~~~~~~~~r~~~~~~f~~~~~~vli~t~~ 338 (413)
..-.+..+.-...++++++.+|+...+.++++.|++.. ..+.. ||+.++..++++.++.+.+|..+|+|+|+.
T Consensus 112 Tfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 112 TFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 45556666666677899999999999999999987642 43333 999999999999999999999999999974
No 376
>PRK06620 hypothetical protein; Validated
Probab=95.25 E-value=0.047 Score=46.21 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=14.5
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
+.+++.||+|+|||...
T Consensus 45 ~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLT 61 (214)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999654
No 377
>PRK10867 signal recognition particle protein; Provisional
Probab=95.24 E-value=0.23 Score=46.71 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=16.3
Q ss_pred EEEeCCCCCchhHHHHHHHH
Q 015093 80 VIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~ 99 (413)
+++++++|+|||.++.-.+.
T Consensus 103 I~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78899999999987755444
No 378
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.18 E-value=0.16 Score=44.77 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=21.0
Q ss_pred CcHHHHhhhhhhh----CCC-cEEEeCCCCCchhHHHH
Q 015093 63 PSAIQQRGIVPFC----KGL-DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 63 ~~~~Q~~~~~~~~----~~~-~~lv~~~tGsGKT~~~~ 95 (413)
+.+.+.+++..+. .+. .+++.||+|+|||...-
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3344444554432 333 48899999999997653
No 379
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.16 E-value=0.086 Score=48.59 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=32.2
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
|.-+++.+++|+|||...+..+...... +.+++|+.-. +-..|......++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECC-cCHHHHHHHHHHc
Confidence 4558999999999998765544433222 3478888754 3345555555554
No 380
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.16 E-value=0.16 Score=49.10 Aligned_cols=77 Identities=14% Similarity=0.203 Sum_probs=62.9
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC-CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR-DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 355 (413)
.++++|+.+|++..+.++++.|++. +..+..+||+++..+|.+......+|+.+|+|+|...-. ..++++..||+.+
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 3568999999999999999999864 567889999999999999999899999999999974322 3466777777654
No 381
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.15 E-value=0.059 Score=51.35 Aligned_cols=84 Identities=26% Similarity=0.196 Sum_probs=53.9
Q ss_pred CHHHHHHHHhCCCCCCcH-------HHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc---CceeEEEEccc
Q 015093 48 KENLLRGIYAYGFEKPSA-------IQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES---LQCQALVLAPT 117 (413)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~-------~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~---~~~~~lvl~P~ 117 (413)
.+-+...|++..=..++. -|-+++.. .+++-++|+|..|||||.+++.-+...+...+ .+..+||+.|+
T Consensus 191 dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN 269 (747)
T COG3973 191 DEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPN 269 (747)
T ss_pred HHHHHHHHHhccchhHHHHHHHhhHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCc
Confidence 445567777664444443 24444421 22444899999999999999766655443322 23359999999
Q ss_pred HHHHHHHHHHHHHhh
Q 015093 118 RELAQQIEKVMRALG 132 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~ 132 (413)
+....-..+.+-.++
T Consensus 270 ~vFleYis~VLPeLG 284 (747)
T COG3973 270 RVFLEYISRVLPELG 284 (747)
T ss_pred HHHHHHHHHhchhhc
Confidence 998877666665554
No 382
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.13 E-value=0.053 Score=49.72 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=20.2
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcc
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~ 103 (413)
.++.++|+||||||||... .+++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 3566999999999999764 55555554
No 383
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.13 E-value=0.29 Score=43.13 Aligned_cols=130 Identities=22% Similarity=0.258 Sum_probs=61.4
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc-cc-HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA-PT-RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL 155 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~-P~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (413)
+-+.+.+|+|+|||.+....+... .. . +.+++++. .+ +.-+ .+.++.+....++.+. ..+..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l-~~-~-g~~V~li~~D~~r~~a---~~ql~~~~~~~~i~~~--~~~~~-------- 136 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKL-KK-Q-GKSVLLAAGDTFRAAA---IEQLEEWAKRLGVDVI--KQKEG-------- 136 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-Hh-c-CCEEEEEeCCCCCHHH---HHHHHHHHHhCCeEEE--eCCCC--------
Confidence 347778999999998775554433 22 2 33565554 32 2222 2233334333343322 11111
Q ss_pred hcCCcEEEeChHHH-HHHHHcCCCCCCCccEEEEccchhhhc-cCcHHHHHHHHhhCC------CCceEEEEeeeCChhH
Q 015093 156 SAGVHVVVGTPGRV-FDMLRRQSLRPDYIRMFVLDEADEMLS-RGFKDQIYDIFQHLP------GKIQVGVFSATMPPEA 227 (413)
Q Consensus 156 ~~~~~Iii~T~~~l-~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~------~~~~~i~lSAT~~~~~ 227 (413)
..|... ...+.. .....+++|++|=+-+... ......+.++.+..+ ..-.++.++||...+.
T Consensus 137 --------~dp~~~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~ 206 (272)
T TIGR00064 137 --------ADPAAVAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNA 206 (272)
T ss_pred --------CCHHHHHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHH
Confidence 001111 111111 0123368999998876532 122233444443333 3455778899876544
Q ss_pred HHHHHH
Q 015093 228 LEITRK 233 (413)
Q Consensus 228 ~~~~~~ 233 (413)
......
T Consensus 207 ~~~~~~ 212 (272)
T TIGR00064 207 LEQAKV 212 (272)
T ss_pred HHHHHH
Confidence 443333
No 384
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.10 E-value=0.19 Score=42.36 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=26.9
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
|.-+.|.+|+|+|||...+..+.+.... +.+++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~---g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ---GKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECC
Confidence 4558999999999998876655554332 3467777764
No 385
>PRK08840 replicative DNA helicase; Provisional
Probab=95.10 E-value=0.26 Score=47.03 Aligned_cols=131 Identities=18% Similarity=0.070 Sum_probs=63.9
Q ss_pred CCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceE
Q 015093 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKV 139 (413)
Q Consensus 60 ~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~ 139 (413)
+++-++---+.+.-+..|.-++|.|.||.|||..++-.+...... . +..+++... ..-..|+..++-.... ++..
T Consensus 200 i~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~-~-~~~v~~fSl-EMs~~ql~~Rlla~~s--~v~~ 274 (464)
T PRK08840 200 VDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD-Q-DKPVLIFSL-EMPAEQLMMRMLASLS--RVDQ 274 (464)
T ss_pred cCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh-C-CCeEEEEec-cCCHHHHHHHHHHhhC--CCCH
Confidence 333333333444444455668999999999997765444433222 1 335666643 3446666655543222 2222
Q ss_pred EEE-ECCcchHHHHHH------HhcCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 140 HAC-VGGTSVREDQRI------LSAGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 140 ~~~-~~~~~~~~~~~~------~~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
..+ .|..+...+.+. +....++.|- |...+....++.......+++||||=.|.+.
T Consensus 275 ~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 275 TKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 111 122222222221 1123355553 3444443332221112247899999988774
No 386
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.09 E-value=0.16 Score=48.77 Aligned_cols=18 Identities=28% Similarity=0.267 Sum_probs=15.7
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+.+++.||+|+|||..+
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 467999999999999765
No 387
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.06 E-value=0.043 Score=47.37 Aligned_cols=53 Identities=21% Similarity=0.205 Sum_probs=36.9
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhh
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~ 132 (413)
.|..++|.||+|+|||..++..+.+.+.. +.++++++- .+-..+..+.+.+++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEEe-eCCHHHHHHHHHHhC
Confidence 35669999999999998776666655433 347788874 455666666666653
No 388
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.06 E-value=0.03 Score=48.25 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=12.7
Q ss_pred EEEeCCCCCchhHHH
Q 015093 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~ 94 (413)
++|.|++|+|||...
T Consensus 1 ~vv~G~pGsGKSt~i 15 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLI 15 (234)
T ss_pred CEEEcCCCCCHHHHH
Confidence 478999999999754
No 389
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.05 E-value=0.12 Score=51.65 Aligned_cols=79 Identities=18% Similarity=0.271 Sum_probs=66.3
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhh----CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-ccccCCCCCCCCEEE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRS----RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 352 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d~~~~~~vi 352 (413)
.+.++++.+|++..|.+.++.+++ .++.+..++|+++..++...++...+|+.+|+|+|. .+...+++.++..||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 456899999999999988877765 378999999999999999999999999999999997 555667788888887
Q ss_pred EcCC
Q 015093 353 NYDL 356 (413)
Q Consensus 353 ~~~~ 356 (413)
+-..
T Consensus 363 IDEa 366 (630)
T TIGR00643 363 IDEQ 366 (630)
T ss_pred Eech
Confidence 6443
No 390
>PRK08506 replicative DNA helicase; Provisional
Probab=95.03 E-value=0.35 Score=46.36 Aligned_cols=116 Identities=21% Similarity=0.152 Sum_probs=60.3
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEE-ECCcchHHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHAC-VGGTSVREDQ 152 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 152 (413)
+..|.-++|.|.||.|||..++-.+...+.. +.++++++. ..-..|+..++-.... ++....+ .+..+...+.
T Consensus 189 ~~~G~LivIaarpg~GKT~fal~ia~~~~~~---g~~V~~fSl-EMs~~ql~~Rlla~~s--~v~~~~i~~~~l~~~e~~ 262 (472)
T PRK08506 189 FNKGDLIIIAARPSMGKTTLCLNMALKALNQ---DKGVAFFSL-EMPAEQLMLRMLSAKT--SIPLQNLRTGDLDDDEWE 262 (472)
T ss_pred CCCCceEEEEcCCCCChHHHHHHHHHHHHhc---CCcEEEEeC-cCCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHHHH
Confidence 3345568999999999998776665554322 336666654 3456666665544322 2222111 1222222221
Q ss_pred HHH-----hcCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 153 RIL-----SAGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 153 ~~~-----~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
... .....+.|- |++.+...+++.......+++||||=.+.+.
T Consensus 263 ~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 263 RLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 111 112345542 4555554443321112247899999998764
No 391
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.92 E-value=0.075 Score=52.83 Aligned_cols=39 Identities=8% Similarity=0.233 Sum_probs=24.2
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
...+++|+||+|.+... ....+.+.+...|....+|+.+
T Consensus 117 g~~KV~IIDEa~~LT~~-A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKS-AFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred CCCEEEEEEChhhCCHH-HHHHHHHHhhcCCCceEEEEEc
Confidence 34689999999987432 3445555566655555445444
No 392
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.91 E-value=0.43 Score=42.13 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=32.8
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCCh
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPP 225 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~ 225 (413)
...+++|+|+||.+.. .....+.+++..-|.+..++++|..+..
T Consensus 94 ~~~kv~ii~~ad~mt~-~AaNaLLK~LEEPp~~~~fiL~~~~~~~ 137 (290)
T PRK05917 94 SPYKIYIIHEADRMTL-DAISAFLKVLEDPPQHGVIILTSAKPQR 137 (290)
T ss_pred CCceEEEEechhhcCH-HHHHHHHHHhhcCCCCeEEEEEeCChhh
Confidence 3478999999998743 3567788888887777777777766543
No 393
>PRK07004 replicative DNA helicase; Provisional
Probab=94.91 E-value=0.18 Score=48.12 Aligned_cols=118 Identities=14% Similarity=0.065 Sum_probs=58.3
Q ss_pred hhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEE-ECCcchHHH
Q 015093 73 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHAC-VGGTSVRED 151 (413)
Q Consensus 73 ~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 151 (413)
-+..|.-++|.|.||+|||..++-.+...... .+..+++.+ ...-..|+..++-.... ++....+ .|......+
T Consensus 209 G~~~g~liviaarpg~GKT~~al~ia~~~a~~--~~~~v~~fS-lEM~~~ql~~R~la~~~--~v~~~~i~~g~l~~~e~ 283 (460)
T PRK07004 209 GMHGGELIIVAGRPSMGKTAFSMNIGEYVAVE--YGLPVAVFS-MEMPGTQLAMRMLGSVG--RLDQHRMRTGRLTDEDW 283 (460)
T ss_pred CCCCCceEEEEeCCCCCccHHHHHHHHHHHHH--cCCeEEEEe-CCCCHHHHHHHHHHhhc--CCCHHHHhcCCCCHHHH
Confidence 34445668999999999997765444433222 133566554 34445665555432211 2222211 222222222
Q ss_pred HHHH-----hcCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 152 QRIL-----SAGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 152 ~~~~-----~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
.+.. .....+.|. |+..+....++.......+++||+|=.+.+.
T Consensus 284 ~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 284 PKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 2111 123456653 4444444333211112237899999988774
No 394
>PRK08006 replicative DNA helicase; Provisional
Probab=94.90 E-value=0.44 Score=45.56 Aligned_cols=147 Identities=18% Similarity=0.067 Sum_probs=72.5
Q ss_pred hhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEE-CCcchHH
Q 015093 72 VPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACV-GGTSVRE 150 (413)
Q Consensus 72 ~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 150 (413)
.-+..|.-++|.|.||.|||..++-.+...... .+.++++... ..-..|+..++-.... ++....+. +..+...
T Consensus 219 ~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~--~g~~V~~fSl-EM~~~ql~~Rlla~~~--~v~~~~i~~~~l~~~e 293 (471)
T PRK08006 219 AGLQPSDLIIVAARPSMGKTTFAMNLCENAAML--QDKPVLIFSL-EMPGEQIMMRMLASLS--RVDQTRIRTGQLDDED 293 (471)
T ss_pred cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCeEEEEec-cCCHHHHHHHHHHHhc--CCCHHHhhcCCCCHHH
Confidence 334445568999999999997766554443322 1335666643 3446666655543322 22222222 2222222
Q ss_pred HHHH------HhcCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhhcc----CcHHHHHHHHhhCC----
Q 015093 151 DQRI------LSAGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR----GFKDQIYDIFQHLP---- 211 (413)
Q Consensus 151 ~~~~------~~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~----~~~~~~~~~~~~~~---- 211 (413)
+.+. +....++.|- |+..+....++.......+++||||=.|.+... +....+..+.+.+.
T Consensus 294 ~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAk 373 (471)
T PRK08006 294 WARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAK 373 (471)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 2221 1123455553 455554444321111124789999999876422 12222333322221
Q ss_pred -CCceEEEEeeeC
Q 015093 212 -GKIQVGVFSATM 223 (413)
Q Consensus 212 -~~~~~i~lSAT~ 223 (413)
-++.++++|-.-
T Consensus 374 el~ipVi~LsQLn 386 (471)
T PRK08006 374 ELQVPVVALSQLN 386 (471)
T ss_pred HhCCeEEEEEecC
Confidence 156677777443
No 395
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.90 E-value=0.042 Score=49.92 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=29.5
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
+..+++++|+||||||||... .+++..+.. ..+++.+=.+.++
T Consensus 159 v~~~~nilI~G~tGSGKTTll-~aLl~~i~~---~~rivtiEd~~El 201 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMS-KTLISAIPP---QERLITIEDTLEL 201 (344)
T ss_pred HHcCCeEEEECCCCccHHHHH-HHHHcccCC---CCCEEEECCCccc
Confidence 345788999999999999654 455554433 2367776676655
No 396
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=94.90 E-value=0.52 Score=43.69 Aligned_cols=144 Identities=15% Similarity=0.072 Sum_probs=62.7
Q ss_pred EEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH-HHHH---HHHHHHHhhcccCceEEEE--ECCcchHHHHHH
Q 015093 81 IQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE-LAQQ---IEKVMRALGDYMGVKVHAC--VGGTSVREDQRI 154 (413)
Q Consensus 81 lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~-l~~q---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 154 (413)
++.++.|+|||......++...........++++ |+.. +... ....+...... ....... ......
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------ 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKII------ 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEEE------
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcEE------
Confidence 5788999999988776666555444433355555 5554 4443 22233333333 1222222 111110
Q ss_pred HhcCCcEEEeChHHH--HHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCC--hhHHHH
Q 015093 155 LSAGVHVVVGTPGRV--FDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMP--PEALEI 230 (413)
Q Consensus 155 ~~~~~~Iii~T~~~l--~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~--~~~~~~ 230 (413)
+.++..|.+.+.+.= ...+.- ..++++++||+-...+..+...+......... ...+..|.|+. ......
T Consensus 73 ~~nG~~i~~~~~~~~~~~~~~~G-----~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~p~~~~~~~~~~ 146 (384)
T PF03237_consen 73 LPNGSRIQFRGADSPDSGDNIRG-----FEYDLIIIDEAAKVPDDAFSELIRRLRATWGG-SIRMYISTPPNPGGWFYEI 146 (384)
T ss_dssp ETTS-EEEEES-----SHHHHHT-----S--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSHHHHH
T ss_pred ecCceEEEEeccccccccccccc-----cccceeeeeecccCchHHHHHHHHhhhhcccC-cceEEeecCCCCCCceeee
Confidence 023445666653321 111211 33689999998876555445444444444432 22224555443 344555
Q ss_pred HHHhcCCC
Q 015093 231 TRKFMNKP 238 (413)
Q Consensus 231 ~~~~~~~~ 238 (413)
........
T Consensus 147 ~~~~~~~~ 154 (384)
T PF03237_consen 147 FQRNLDDD 154 (384)
T ss_dssp HHHHHCTS
T ss_pred eehhhcCC
Confidence 55555444
No 397
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.86 E-value=0.04 Score=45.12 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=26.7
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQ 123 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q 123 (413)
+.+++++++.||+|+|||..+...+.+.+. .+..++++. ...|...
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~---~g~~v~f~~-~~~L~~~ 89 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIR---KGYSVLFIT-ASDLLDE 89 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEE-HHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhcc---CCcceeEee-cCceecc
Confidence 445778999999999999877544444333 233566554 4455544
No 398
>PHA00012 I assembly protein
Probab=94.82 E-value=0.7 Score=41.15 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=20.6
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccc
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYE 105 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~ 105 (413)
-+|.|.+|+|||+.+..-+...+.++
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcC
Confidence 47899999999998877777665543
No 399
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=94.80 E-value=0.25 Score=47.02 Aligned_cols=143 Identities=17% Similarity=0.077 Sum_probs=70.3
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEE-ECCcchHHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHAC-VGGTSVREDQ 152 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 152 (413)
+..|.-++|.|+||+|||..++-.+...... .+..+++++.- .-..|..+++..... ++....+ .|......+.
T Consensus 192 ~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~--~g~~vl~~SlE-m~~~~i~~R~~~~~~--~v~~~~~~~g~l~~~~~~ 266 (434)
T TIGR00665 192 LQPSDLIILAARPSMGKTAFALNIAENAAIK--EGKPVAFFSLE-MSAEQLAMRMLSSES--RVDSQKLRTGKLSDEDWE 266 (434)
T ss_pred CCCCeEEEEEeCCCCChHHHHHHHHHHHHHh--CCCeEEEEeCc-CCHHHHHHHHHHHhc--CCCHHHhccCCCCHHHHH
Confidence 3445568999999999998776555543322 13367776543 345555555544322 2221111 1222222111
Q ss_pred H------HHhcCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhhccC----cHHHHHHHHhhCC-----C
Q 015093 153 R------ILSAGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG----FKDQIYDIFQHLP-----G 212 (413)
Q Consensus 153 ~------~~~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~----~~~~~~~~~~~~~-----~ 212 (413)
+ .+. ...+.|. |.+.+...++..... ..+++||||=.+.+.... ....+..+.+.+. .
T Consensus 267 ~~~~a~~~l~-~~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~ 344 (434)
T TIGR00665 267 KLTSAAGKLS-EAPLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKEL 344 (434)
T ss_pred HHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 1 112 2345542 445555444322111 236899999888764221 2222333333222 2
Q ss_pred CceEEEEeeeC
Q 015093 213 KIQVGVFSATM 223 (413)
Q Consensus 213 ~~~~i~lSAT~ 223 (413)
++.++++|-..
T Consensus 345 ~i~vi~lsqln 355 (434)
T TIGR00665 345 NVPVIALSQLS 355 (434)
T ss_pred CCeEEEEeccC
Confidence 56677777554
No 400
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.76 E-value=0.081 Score=56.77 Aligned_cols=99 Identities=18% Similarity=0.114 Sum_probs=63.2
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceE--------EEEECC-c-
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKV--------HACVGG-T- 146 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~--------~~~~~~-~- 146 (413)
.++++|.|+.|||||.+...-++..+..+....++++++-|+.-+.++.+++........... ..+.+. .
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~~L~~~~~~~~~~l~~~l~~~~~~~~~ 89 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFDRLGEWAVLDDAELRARLEALEGKRPD 89 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCCC
Confidence 567999999999999888777776665544445899999999999988887765543211000 000000 0
Q ss_pred --ch----HHHHHHHhcCCcEEEeChHHHHHHHHc
Q 015093 147 --SV----REDQRILSAGVHVVVGTPGRVFDMLRR 175 (413)
Q Consensus 147 --~~----~~~~~~~~~~~~Iii~T~~~l~~~~~~ 175 (413)
.. ......+.....+-|.|.++|...+.+
T Consensus 90 ~~~l~~ar~l~~~~l~~~~~l~I~Ti~sf~~~l~r 124 (1141)
T TIGR02784 90 AAKLAEARRLFARALETPGGLKIQTIHAFCESLLH 124 (1141)
T ss_pred hHHHHHHHHHHHHHHhCCCCceEeeHHHHHHHHHH
Confidence 00 011223344557889999999876643
No 401
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.75 E-value=0.082 Score=48.40 Aligned_cols=42 Identities=12% Similarity=0.292 Sum_probs=26.7
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
++.++|+||||||||... ..++..+.... +.+++.+-...+.
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~~~-~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINKNA-AGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCcCC-CCEEEEEcCChhh
Confidence 566999999999999765 44454443322 3366666554443
No 402
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.74 E-value=0.61 Score=43.87 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=17.0
Q ss_pred EEEeCCCCCchhHHHHHHHHH
Q 015093 80 VIQQAQSGTGKTATFCSGILQ 100 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~ 100 (413)
+++++++|+|||.++.-.+..
T Consensus 102 i~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 788999999999887555544
No 403
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.73 E-value=0.051 Score=46.58 Aligned_cols=53 Identities=21% Similarity=0.230 Sum_probs=35.0
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
.|..++|.|++|+|||..++..+.+.+.+. +.++++++-. +-..+..+.++.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~e-e~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSFE-EPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEESS-S-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEec-CCHHHHHHHHHHc
Confidence 356699999999999988776666665541 2377777743 3356666666655
No 404
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.72 E-value=0.17 Score=40.87 Aligned_cols=49 Identities=24% Similarity=0.431 Sum_probs=34.7
Q ss_pred CCccEEEEccchhhhccCc--HHHHHHHHhhCCCCceEEEEeeeCChhHHH
Q 015093 181 DYIRMFVLDEADEMLSRGF--KDQIYDIFQHLPGKIQVGVFSATMPPEALE 229 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~ 229 (413)
..+++||+||+-...+.++ ...+..++...|....+|+..-.+++.+.+
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e 146 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLE 146 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHH
Confidence 4479999999998766553 356777888888888777655555554443
No 405
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.64 E-value=1.2 Score=36.15 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=15.5
Q ss_pred EEEeCCCCCchhHHHHHHHH
Q 015093 80 VIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~ 99 (413)
+++.+++|+|||......+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999987644443
No 406
>PRK05748 replicative DNA helicase; Provisional
Probab=94.64 E-value=0.31 Score=46.56 Aligned_cols=145 Identities=12% Similarity=0.064 Sum_probs=70.3
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEE-ECCcchHHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHAC-VGGTSVREDQ 152 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 152 (413)
+..|.-++|.|+||+|||..++-.+...... .+.++++++. ..-..|+..++-.... ++....+ .|......+.
T Consensus 200 ~~~G~livIaarpg~GKT~~al~ia~~~a~~--~g~~v~~fSl-Ems~~~l~~R~l~~~~--~v~~~~i~~~~l~~~e~~ 274 (448)
T PRK05748 200 LQPNDLIIVAARPSVGKTAFALNIAQNVATK--TDKNVAIFSL-EMGAESLVMRMLCAEG--NIDAQRLRTGQLTDDDWP 274 (448)
T ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHHHh--CCCeEEEEeC-CCCHHHHHHHHHHHhc--CCCHHHhhcCCCCHHHHH
Confidence 3445568999999999998776555443322 1335666653 3445565555532211 2221111 1222222221
Q ss_pred HH-----HhcCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhhcc-----CcHHHHHHHHhhCC-----C
Q 015093 153 RI-----LSAGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR-----GFKDQIYDIFQHLP-----G 212 (413)
Q Consensus 153 ~~-----~~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-----~~~~~~~~~~~~~~-----~ 212 (413)
.. ...+.++.|. |++.+...+++......++++||||=.|.+... .....+..+.+.+. -
T Consensus 275 ~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~ 354 (448)
T PRK05748 275 KLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKEL 354 (448)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHh
Confidence 11 1122345553 445555444332111124789999999977421 11222333322221 2
Q ss_pred CceEEEEeeeC
Q 015093 213 KIQVGVFSATM 223 (413)
Q Consensus 213 ~~~~i~lSAT~ 223 (413)
++.++++|-..
T Consensus 355 ~i~vi~lsQln 365 (448)
T PRK05748 355 KVPVIALSQLS 365 (448)
T ss_pred CCeEEEecccC
Confidence 56677777654
No 407
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.63 E-value=0.65 Score=42.72 Aligned_cols=43 Identities=16% Similarity=0.170 Sum_probs=24.9
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhhC-CCCceEEEEeeeCChh
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQHL-PGKIQVGVFSATMPPE 226 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~lSAT~~~~ 226 (413)
..++.+||+|- .+..-.-.+.+++..+ ..+.-+|+.|-+++.+
T Consensus 128 ~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 128 SRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred CCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 46999999994 3332222233344333 3466677777777643
No 408
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=94.63 E-value=0.12 Score=47.63 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=22.1
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccc
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYE 105 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~ 105 (413)
+-+|+.++|.+|+|+|||... ..+...+..+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~-~~i~~~I~~n 195 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLL-QKIAQAITRN 195 (415)
T ss_pred eCCCCEEEEECCCCCChhHHH-HHHHHhhccc
Confidence 445788999999999999754 3455544443
No 409
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.61 E-value=0.19 Score=50.14 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=72.7
Q ss_pred EEEEeCccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhC-CCeeEeecCCCCHHHHHHHHHHHhcCCCeE
Q 015093 256 FHVNVDKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSR-DHTVSATHGDMDQNSRDIIMREFRSGSSRV 332 (413)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 332 (413)
+.........|.+.+.+++.+. .++.+||.+|.+.....+.+.|+.. |.++..+|+++++.+|.+......+|+.+|
T Consensus 220 ~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~v 299 (730)
T COG1198 220 FLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARV 299 (730)
T ss_pred eeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceE
Confidence 3344444456667777666554 4568999999999998888888765 678999999999999999999999999999
Q ss_pred EEEeCccccCCCCCCCCEEEE
Q 015093 333 LITTDLLARGIDVQQVSLVIN 353 (413)
Q Consensus 333 li~t~~~~~G~d~~~~~~vi~ 353 (413)
+|.|..+- =.-++++-.+|.
T Consensus 300 VIGtRSAl-F~Pf~~LGLIIv 319 (730)
T COG1198 300 VIGTRSAL-FLPFKNLGLIIV 319 (730)
T ss_pred EEEechhh-cCchhhccEEEE
Confidence 99996321 123345555553
No 410
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=94.57 E-value=0.023 Score=46.43 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=27.8
Q ss_pred HHhcCCcEEEeChHHHHHHHHcCC---CCCCCccEEEEccchhhhc
Q 015093 154 ILSAGVHVVVGTPGRVFDMLRRQS---LRPDYIRMFVLDEADEMLS 196 (413)
Q Consensus 154 ~~~~~~~Iii~T~~~l~~~~~~~~---~~~~~~~~iIiDE~h~~~~ 196 (413)
.....++|+|+++..|++-..... .... -.+||+||||++.+
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~~~~~~~~~~-~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIRKSLFGIDLK-DNIVIFDEAHNLED 159 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHHHHHCT--CC-CEEEEETTGGGCGG
T ss_pred HhcccCCEEEeCHHHHhhHHHHhhhcccccc-CcEEEEecccchHH
Confidence 334568999999999976443222 2233 37899999999854
No 411
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.51 E-value=0.23 Score=49.45 Aligned_cols=91 Identities=21% Similarity=0.175 Sum_probs=70.0
Q ss_pred ccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCC--CeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc
Q 015093 264 EWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRD--HTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLL 339 (413)
Q Consensus 264 ~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~ 339 (413)
..|...+.++++.. .++.+||.+|.+..+..+.+.|++.. ..+..+|+++++.+|.+......+|+.+|+|.|..+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 35666666655443 45679999999999999999998753 568999999999999999999999999999999742
Q ss_pred ccCCCCCCCCEEEEcC
Q 015093 340 ARGIDVQQVSLVINYD 355 (413)
Q Consensus 340 ~~G~d~~~~~~vi~~~ 355 (413)
- =.-++++..||..+
T Consensus 251 v-FaP~~~LgLIIvdE 265 (665)
T PRK14873 251 V-FAPVEDLGLVAIWD 265 (665)
T ss_pred E-EeccCCCCEEEEEc
Confidence 2 12445566666544
No 412
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=94.51 E-value=0.55 Score=45.37 Aligned_cols=126 Identities=16% Similarity=0.117 Sum_probs=76.5
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHH----HhhcccCceEEEEECCcchHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMR----ALGDYMGVKVHACVGGTSVREDQR 153 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 153 (413)
+-.+...|---|||+.. .++...+...-.+-++.|+...+..++-..+++. +|..... +....+
T Consensus 203 kaTVFLVPRRHGKTWf~-VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~--vi~~k~--------- 270 (668)
T PHA03372 203 KATVFLVPRRHGKTWFI-IPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKH--TIENKD--------- 270 (668)
T ss_pred cceEEEecccCCceehH-HHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccc--eeeecC---------
Confidence 34677889999999874 5565555555557799999999887776666654 3332111 111111
Q ss_pred HHhcCCcEEEeChHH-----HHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCC-CCceEEEEeeeCC
Q 015093 154 ILSAGVHVVVGTPGR-----VFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLP-GKIQVGVFSATMP 224 (413)
Q Consensus 154 ~~~~~~~Iii~T~~~-----l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~lSAT~~ 224 (413)
.-|.+.-|+. +..........-+++.++++||||-+ ....+..++-.+. +++++|.+|.|-+
T Consensus 271 -----~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI----~~~a~~tilgfm~q~~~KiIfISS~Ns 338 (668)
T PHA03372 271 -----NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFI----KKDAFNTILGFLAQNTTKIIFISSTNT 338 (668)
T ss_pred -----cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhcc----CHHHHHHhhhhhcccCceEEEEeCCCC
Confidence 1233332211 12223345566677899999999965 3344445554443 4788999998853
No 413
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.49 E-value=0.17 Score=50.11 Aligned_cols=39 Identities=8% Similarity=0.169 Sum_probs=25.8
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
...+++||||+|.+... ....+.+.+...+....+|+.|
T Consensus 120 ~~~KVvIIdea~~Ls~~-a~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQA-AFNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred CCcEEEEEECcccCCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 34689999999987432 3556667777766555555433
No 414
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.45 E-value=0.37 Score=45.90 Aligned_cols=39 Identities=8% Similarity=0.275 Sum_probs=24.4
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
...+++|+||+|.+... ....+.+.+...+....+|+.+
T Consensus 120 ~~~kvvIIdead~lt~~-~~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKE-AFNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCHH-HHHHHHHHhhcCCCCceEEEEe
Confidence 34689999999987432 2344555666655555555443
No 415
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=0.064 Score=52.33 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=30.6
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeee
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSAT 222 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT 222 (413)
.+..++|+|||-..++......+++.+....++ +.+++=|-
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIAH 661 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIAH 661 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEeh
Confidence 346799999999988887788888888877766 34444443
No 416
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=94.35 E-value=0.79 Score=37.03 Aligned_cols=138 Identities=15% Similarity=0.231 Sum_probs=60.7
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCC
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGV 159 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (413)
+.|.-..|-|||.+++-.++..+-. +.+++++-=.+.-. ..-+...+....++.......+......... .
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~---G~rV~ivQFlKg~~--~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~----~ 76 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGH---GMRVLIVQFLKGGR--YSGELKALKKLPNVEIERFGKGFVWRMNEEE----E 76 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCT---T--EEEEESS--SS----HHHHHHGGGT--EEEE--TT----GGGHH----H
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhC---CCEEEEEEEecCCC--CcCHHHHHHhCCeEEEEEcCCcccccCCCcH----H
Confidence 6677788999999987777666544 44787776555411 1122222221112332221111100000000 0
Q ss_pred cEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCc--HHHHHHHHhhCCCCceEEEEeeeCChhHHH
Q 015093 160 HVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGF--KDQIYDIFQHLPGKIQVGVFSATMPPEALE 229 (413)
Q Consensus 160 ~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~ 229 (413)
+ ........+.... ......+++||+||+-...+.++ ...+..++...|...-+|+..-.+++.+.+
T Consensus 77 ~--~~~~~~~~~~a~~-~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e 145 (172)
T PF02572_consen 77 D--RAAAREGLEEAKE-AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIE 145 (172)
T ss_dssp H--HHHHHHHHHHHHH-HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHH
T ss_pred H--HHHHHHHHHHHHH-HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHH
Confidence 1 0011111111111 12234589999999998776553 356777888888777777555455544443
No 417
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=94.34 E-value=0.06 Score=52.57 Aligned_cols=68 Identities=19% Similarity=-0.019 Sum_probs=53.2
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc---cCceeEEEEcccHHHHHHHHHHHH
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE---SLQCQALVLAPTRELAQQIEKVMR 129 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~---~~~~~~lvl~P~~~l~~q~~~~~~ 129 (413)
.+-.-|..|....++.+-.|+++|+|+|||++.+.++-..+.+. ....+++++|=|...+.|....+-
T Consensus 378 ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy 448 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIY 448 (1025)
T ss_pred eecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHH
Confidence 45567999999998999999999999999999877665555443 123479999999988888766554
No 418
>PRK10436 hypothetical protein; Provisional
Probab=94.34 E-value=0.089 Score=49.93 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=24.3
Q ss_pred HHHHhhhhhhhC--CCcEEEeCCCCCchhHHHHHHHHHhcc
Q 015093 65 AIQQRGIVPFCK--GLDVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 65 ~~Q~~~~~~~~~--~~~~lv~~~tGsGKT~~~~~~i~~~l~ 103 (413)
+.|.+.+..+.. ++-++|.||||||||.+. .+++..+.
T Consensus 204 ~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 204 PAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 334444444433 345899999999999764 45555543
No 419
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.33 E-value=0.36 Score=46.39 Aligned_cols=36 Identities=11% Similarity=0.246 Sum_probs=21.4
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEE
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVG 217 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i 217 (413)
....++|+||+|.+... ....+.+.+...+...-++
T Consensus 118 ~~~KVvIIDEad~Lt~~-a~naLLk~LEepp~~~v~I 153 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKE-AFNALLKTLEEPPPRTIFI 153 (486)
T ss_pred CCeeEEEEEChhhcCHH-HHHHHHHHHhcCCCCeEEE
Confidence 34689999999987432 2344455555544444333
No 420
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.32 E-value=0.055 Score=49.07 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=27.7
Q ss_pred hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
..+++++|+|+||||||... .+++..+... .+++.+=.+.++
T Consensus 158 ~~~~nili~G~tgSGKTTll-~aL~~~ip~~---~ri~tiEd~~El 199 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFT-NAALREIPAI---ERLITVEDAREI 199 (332)
T ss_pred HcCCcEEEECCCCCCHHHHH-HHHHhhCCCC---CeEEEecCCCcc
Confidence 35788999999999999654 4555555332 366665444443
No 421
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=94.31 E-value=0.22 Score=51.48 Aligned_cols=76 Identities=16% Similarity=0.240 Sum_probs=65.7
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC----CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEe-CccccCCCCCCCCEEE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR----DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITT-DLLARGIDVQQVSLVI 352 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t-~~~~~G~d~~~~~~vi 352 (413)
.++.+.|.+||.=.|++-++-|+++ .+++..++.-.+.+++.++++..++|+++|+|.| ..+..++-+.++-.+|
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 4457899999998888877777765 5678888888899999999999999999999999 6889999999988887
Q ss_pred E
Q 015093 353 N 353 (413)
Q Consensus 353 ~ 353 (413)
+
T Consensus 722 I 722 (1139)
T COG1197 722 I 722 (1139)
T ss_pred E
Confidence 5
No 422
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=94.27 E-value=0.16 Score=46.49 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=29.9
Q ss_pred hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
-+|+..+|.+|.|+|||..+ ..+...+..+... ..+|++-..+......+..+.
T Consensus 167 GkGQR~lIvgppGvGKTTLa-K~Ian~I~~nhFD-v~~~VvLIgER~~EVtdiqrs 220 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLL-QNIANSITTNHPE-VHLIVLLIDERPEEVTDMQRS 220 (416)
T ss_pred ccCceEEEeCCCCCChhHHH-HHHHHHHHhhcCC-eEEEEEEeCCchhHHHHHHHH
Confidence 34788999999999999654 3455544443323 233333344433333333333
No 423
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.23 E-value=0.26 Score=51.09 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=65.3
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC----CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-ccccCCCCCCCCEEE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR----DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 352 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d~~~~~~vi 352 (413)
.+.+++|.+|++..|.+.++.+++. +..+..+++..+..++.++++.+.+|+.+|+|+|. .+...+.+.++..+|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 4468999999999999998887753 56788899999999999999999999999999996 555667788888887
Q ss_pred EcC
Q 015093 353 NYD 355 (413)
Q Consensus 353 ~~~ 355 (413)
+-.
T Consensus 579 IDE 581 (926)
T TIGR00580 579 IDE 581 (926)
T ss_pred eec
Confidence 644
No 424
>PHA00350 putative assembly protein
Probab=94.22 E-value=0.37 Score=44.51 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=17.9
Q ss_pred EEEeCCCCCchhHHHHH-HHHHhccc
Q 015093 80 VIQQAQSGTGKTATFCS-GILQQLDY 104 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~-~i~~~l~~ 104 (413)
.++.|.+|||||+.++. .++..+..
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~ 29 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKD 29 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHC
Confidence 47899999999988764 34444433
No 425
>PRK09165 replicative DNA helicase; Provisional
Probab=94.18 E-value=0.38 Score=46.46 Aligned_cols=116 Identities=11% Similarity=0.058 Sum_probs=59.7
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccc------------cCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEE-
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYE------------SLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHAC- 142 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~------------~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~- 142 (413)
.|.-++|.|+||+|||..++-.+.+..... ..+.+++|++ ...-..|+..++-.... ++....+
T Consensus 216 ~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fS-lEMs~~ql~~R~la~~s--~v~~~~i~ 292 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFS-LEMSAEQLATRILSEQS--EISSSKIR 292 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEe-CcCCHHHHHHHHHHHhc--CCCHHHHh
Confidence 345589999999999987765554443221 1134666664 34456666666544322 2222112
Q ss_pred ECCcchHHHHHHHh-----cCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 143 VGGTSVREDQRILS-----AGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 143 ~~~~~~~~~~~~~~-----~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
.|......+.+... ...++.|- |++.+...+++.... ..+++||||=.|.+.
T Consensus 293 ~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~-~~~~lvvIDyLqli~ 354 (497)
T PRK09165 293 RGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKRQ-HGLDLLVVDYLQLIR 354 (497)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcc
Confidence 22222222221111 12345553 455555444332111 237899999999764
No 426
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=0.13 Score=52.63 Aligned_cols=55 Identities=22% Similarity=0.141 Sum_probs=36.7
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCC-CcHHHHhhhhhhhCCCcEEEeCCCCCchhHHH
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEK-PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~-~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
...|++.|.-+.++..|+.+-... +||-+-+- -.+...+.++.++|+|+|||+.+
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~-~~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDN-FNITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhh-cccCCCcceeecCCCCCchhHHH
Confidence 467777887778888887764432 22222221 13445678999999999999875
No 427
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=94.08 E-value=0.32 Score=47.38 Aligned_cols=90 Identities=18% Similarity=0.278 Sum_probs=70.4
Q ss_pred HHHHHHHHHhc-CCCcEEEEEcCcccH----HHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-ccc
Q 015093 267 LDTLCDLYETL-AITQSVIFVNTRRKV----DWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LLA 340 (413)
Q Consensus 267 ~~~l~~~~~~~-~~~~~lIf~~~~~~a----~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~ 340 (413)
+-++..++... .+..+.+-+||.=-| ..+.+.|...|+.+.++.|.+....|+++++...+|..+++|.|- .+.
T Consensus 298 vVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ 377 (677)
T COG1200 298 VVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ 377 (677)
T ss_pred HHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh
Confidence 33444444333 455788899986544 455556666789999999999999999999999999999999996 677
Q ss_pred cCCCCCCCCEEEEcCC
Q 015093 341 RGIDVQQVSLVINYDL 356 (413)
Q Consensus 341 ~G~d~~~~~~vi~~~~ 356 (413)
+.+++.++-.||.-..
T Consensus 378 d~V~F~~LgLVIiDEQ 393 (677)
T COG1200 378 DKVEFHNLGLVIIDEQ 393 (677)
T ss_pred cceeecceeEEEEecc
Confidence 8999999988886544
No 428
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.98 E-value=0.6 Score=47.37 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=16.0
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
..+.++.||+|+|||..+-
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4579999999999997753
No 429
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.96 E-value=0.13 Score=42.43 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=26.5
Q ss_pred CcHHHHhhhhhhh-CCCcEEEeCCCCCchhHHHHHHHHHhc
Q 015093 63 PSAIQQRGIVPFC-KGLDVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 63 ~~~~Q~~~~~~~~-~~~~~lv~~~tGsGKT~~~~~~i~~~l 102 (413)
+.+-|.+.+.... .++.+++.+|||||||... ..++..+
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i 49 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL-NALLAFI 49 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhc
Confidence 4555666665544 4677999999999999754 3444444
No 430
>CHL00176 ftsH cell division protein; Validated
Probab=93.94 E-value=0.35 Score=48.02 Aligned_cols=17 Identities=35% Similarity=0.362 Sum_probs=15.1
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
+.+++.||+|+|||..+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999775
No 431
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.88 E-value=0.12 Score=45.46 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=38.3
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhh
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~ 132 (413)
.|+.++|.+++|+|||..++..+.+.+.. +.++++++- .+...+..+.+.++.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~---ge~vlyvs~-~e~~~~l~~~~~~~g 74 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE---GEPVLYVST-EESPEELLENARSFG 74 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc---CCcEEEEEe-cCCHHHHHHHHHHcC
Confidence 46779999999999998877666665544 447788775 455666667676654
No 432
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=93.88 E-value=0.11 Score=51.06 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=24.6
Q ss_pred HHHHhhhhhhhC--CCcEEEeCCCCCchhHHHHHHHHHhcc
Q 015093 65 AIQQRGIVPFCK--GLDVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 65 ~~Q~~~~~~~~~--~~~~lv~~~tGsGKT~~~~~~i~~~l~ 103 (413)
+-|.+.+..+.. +.-++++||||||||.+. ..++..+.
T Consensus 302 ~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 302 PDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 344444444433 344889999999999774 55555553
No 433
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=93.81 E-value=0.19 Score=43.52 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=22.0
Q ss_pred hhhCCCcEEEeCCCCCchhHHHHHHHHHhccc
Q 015093 73 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDY 104 (413)
Q Consensus 73 ~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~ 104 (413)
.+..|+.++|.+|.|+|||... -.+...+..
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLl-r~I~n~l~~ 42 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLL-QSIANAITK 42 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHH-HHHHhcccc
Confidence 3456888999999999999643 444444433
No 434
>PRK08760 replicative DNA helicase; Provisional
Probab=93.80 E-value=0.48 Score=45.45 Aligned_cols=116 Identities=14% Similarity=0.061 Sum_probs=58.4
Q ss_pred hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRI 154 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (413)
..|.-++|.|.||.|||..++-.+....... +.++++.+. ..-..|+..++.......+... ...|......+.+.
T Consensus 227 ~~G~LivIaarPg~GKTafal~iA~~~a~~~--g~~V~~fSl-EMs~~ql~~Rl~a~~s~i~~~~-i~~g~l~~~e~~~~ 302 (476)
T PRK08760 227 QPTDLIILAARPAMGKTTFALNIAEYAAIKS--KKGVAVFSM-EMSASQLAMRLISSNGRINAQR-LRTGALEDEDWARV 302 (476)
T ss_pred CCCceEEEEeCCCCChhHHHHHHHHHHHHhc--CCceEEEec-cCCHHHHHHHHHHhhCCCcHHH-HhcCCCCHHHHHHH
Confidence 3345589999999999987765554433221 335666654 3445666666654432222111 11122222222111
Q ss_pred -----HhcCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 155 -----LSAGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 155 -----~~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
......+.|. |++.+...++.... ...+++||||=.+.+.
T Consensus 303 ~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 303 TGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 0112345543 44555444432211 1237899999888764
No 435
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=93.76 E-value=0.34 Score=44.95 Aligned_cols=55 Identities=24% Similarity=0.224 Sum_probs=35.6
Q ss_pred ccCCCCCHHHHHHHHhCCCCC--CcHHH-H----hhhhhhhCCCcEEEeCCCCCchhHHHHH
Q 015093 42 FDSMGLKENLLRGIYAYGFEK--PSAIQ-Q----RGIVPFCKGLDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 42 ~~~~~l~~~~~~~l~~~~~~~--~~~~Q-~----~~~~~~~~~~~~lv~~~tGsGKT~~~~~ 96 (413)
=..+...+|+.-.+...|+.. +..-| . ..++.+..+.|++..||+|+|||-.+..
T Consensus 167 R~~FT~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 167 RKEFTLEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HhhcCHHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHH
Confidence 344556677777778787752 22211 1 1124455678999999999999976643
No 436
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.75 E-value=0.32 Score=49.70 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=16.2
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.++.+++.||+|+|||..+
T Consensus 211 ~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCceEEEECCCCCChHHHH
Confidence 4577999999999999664
No 437
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.73 E-value=2 Score=38.83 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=29.0
Q ss_pred CCccEEEEccchhhhccC-cHHHHHHHHhh------CCCCceEEEEeeeCChhHHHHHHHh
Q 015093 181 DYIRMFVLDEADEMLSRG-FKDQIYDIFQH------LPGKIQVGVFSATMPPEALEITRKF 234 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~------~~~~~~~i~lSAT~~~~~~~~~~~~ 234 (413)
.++++||+|=+-+..... .-..+.++.+. ..+...++.++||...+.......+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 346899999887654222 22333333322 1223357889999765443333333
No 438
>PRK06321 replicative DNA helicase; Provisional
Probab=93.72 E-value=0.82 Score=43.75 Aligned_cols=115 Identities=17% Similarity=0.076 Sum_probs=58.2
Q ss_pred hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEE-ECCcchHHHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHAC-VGGTSVREDQR 153 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 153 (413)
..|.-++|.|.||.|||..++-.+...... . +..+++.+. ..-..|+..++-.... ++....+ .+......+.+
T Consensus 224 ~~G~LiiiaarPgmGKTafal~ia~~~a~~-~-g~~v~~fSL-EMs~~ql~~Rlla~~s--~v~~~~i~~~~l~~~e~~~ 298 (472)
T PRK06321 224 SPSNLMILAARPAMGKTALALNIAENFCFQ-N-RLPVGIFSL-EMTVDQLIHRIICSRS--EVESKKISVGDLSGRDFQR 298 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHh-c-CCeEEEEec-cCCHHHHHHHHHHhhc--CCCHHHhhcCCCCHHHHHH
Confidence 334558899999999998765533332212 1 335666543 3445666555543221 2222222 22222222221
Q ss_pred HH-----hcCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 154 IL-----SAGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 154 ~~-----~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
.. .....+.|- |.+.+....+..... ..+++||||=.+.+.
T Consensus 299 ~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~~-~~~~lvvIDyLql~~ 349 (472)
T PRK06321 299 IVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKES-YDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHHcC
Confidence 11 123356664 445554444332211 237899999998764
No 439
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.29 Score=43.93 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=33.3
Q ss_pred cccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhh----hhhhCCCcEEEeCCCCCchhHHHH
Q 015093 36 DEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGI----VPFCKGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~----~~~~~~~~~lv~~~tGsGKT~~~~ 95 (413)
.++..+|.+.+==+.+.+.+.+.-+ .|.|..-+ ..+..-+.+++.+|+|+|||..+-
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~Vi---lPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAK 145 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQELVI---LPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAK 145 (386)
T ss_pred hhceeehhhccchHHHHHHHHHHHh---hcccchhhhcccccccCCccceecCCCCchHHHHHH
Confidence 3445667776655566666655422 22222111 222234679999999999998763
No 440
>PRK04328 hypothetical protein; Provisional
Probab=93.71 E-value=0.13 Score=44.73 Aligned_cols=53 Identities=23% Similarity=0.238 Sum_probs=35.0
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhh
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~ 132 (413)
.|..++|.+++|+|||..++..+.+.+.+ +.++++++ +.+-..+..+.+++++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~---ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 35669999999999998776656555433 33667776 3344555666666553
No 441
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.69 E-value=0.078 Score=46.85 Aligned_cols=43 Identities=19% Similarity=0.348 Sum_probs=29.5
Q ss_pred hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
..++++++.|+||||||... .+++..+... ..+++++=...++
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~~--~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPPE--DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHTT--TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHH-HHHhhhcccc--ccceEEeccccce
Confidence 44678999999999999765 5555555444 2377777666554
No 442
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.67 E-value=0.13 Score=46.52 Aligned_cols=43 Identities=21% Similarity=0.182 Sum_probs=26.6
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQ 123 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q 123 (413)
+.++++.||||+|||..+.. +...+... +..++++. ...+..+
T Consensus 183 ~~~Lll~G~~GtGKThLa~a-Ia~~l~~~--g~~V~y~t-~~~l~~~ 225 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNC-IAKELLDR--GKSVIYRT-ADELIEI 225 (329)
T ss_pred CCcEEEECCCCCcHHHHHHH-HHHHHHHC--CCeEEEEE-HHHHHHH
Confidence 46799999999999976543 33333322 33565554 3455443
No 443
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.66 E-value=0.13 Score=46.41 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=14.8
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
.++++.||+|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999765
No 444
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.65 E-value=0.15 Score=44.70 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=30.2
Q ss_pred cHHHHhhhhhhhC--CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 64 SAIQQRGIVPFCK--GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 64 ~~~Q~~~~~~~~~--~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
.+.|.+.+..+.. +..++|.++||||||... ..++..+.. ...+++.+=...+
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~~--~~~~iitiEdp~E 119 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELNT--PEKNIITVEDPVE 119 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhCC--CCCeEEEECCCce
Confidence 3445555554443 345899999999999765 444444432 1224555543333
No 445
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=93.49 E-value=0.16 Score=50.25 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=22.1
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhhCCCC
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQHLPGK 213 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~ 213 (413)
-.++|+|||..-.+......+.+.+....++
T Consensus 484 ~~ILILDEaTSalD~~tE~~I~~~l~~l~~~ 514 (567)
T COG1132 484 PPILILDEATSALDTETEALIQDALKKLLKG 514 (567)
T ss_pred CCEEEEeccccccCHHhHHHHHHHHHHHhcC
Confidence 4689999999877776666666666654444
No 446
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=0.23 Score=45.23 Aligned_cols=139 Identities=19% Similarity=0.234 Sum_probs=71.2
Q ss_pred cccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 38 VYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
...++.+.-|++.+.+.+...-+.+-+---.+ .--++++..+|+|+|||+.+
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~-----apfRNilfyGPPGTGKTm~A----------------------- 401 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKKHQ-----APFRNILFYGPPGTGKTMFA----------------------- 401 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccccccc-----chhhheeeeCCCCCCchHHH-----------------------
Confidence 34556666677777666653211000000000 00267999999999999765
Q ss_pred HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc
Q 015093 118 RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR 197 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~ 197 (413)
++|+ ...|+....++||..-..-. =-|+-.+.++++-....- ==++.|||++-++..
T Consensus 402 relA-----------r~SGlDYA~mTGGDVAPlG~--------qaVTkiH~lFDWakkS~r----GLllFIDEADAFLce 458 (630)
T KOG0742|consen 402 RELA-----------RHSGLDYAIMTGGDVAPLGA--------QAVTKIHKLFDWAKKSRR----GLLLFIDEADAFLCE 458 (630)
T ss_pred HHHH-----------hhcCCceehhcCCCccccch--------HHHHHHHHHHHHHhhccc----ceEEEehhhHHHHHH
Confidence 1111 12355666666654321111 113334445544433211 126889999987642
Q ss_pred C--------cHHHHHHHHhhCC-CCceEEEEeeeCChhH
Q 015093 198 G--------FKDQIYDIFQHLP-GKIQVGVFSATMPPEA 227 (413)
Q Consensus 198 ~--------~~~~~~~~~~~~~-~~~~~i~lSAT~~~~~ 227 (413)
. -...++.++-+.. ....++++=||-.+..
T Consensus 459 RnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgd 497 (630)
T KOG0742|consen 459 RNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD 497 (630)
T ss_pred hchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccc
Confidence 2 2244444443333 3556888888876543
No 447
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.47 E-value=0.071 Score=43.13 Aligned_cols=27 Identities=26% Similarity=0.532 Sum_probs=16.7
Q ss_pred CccEEEEccchhhh--ccCcHHHHHHHHh
Q 015093 182 YIRMFVLDEADEML--SRGFKDQIYDIFQ 208 (413)
Q Consensus 182 ~~~~iIiDE~h~~~--~~~~~~~~~~~~~ 208 (413)
..+++|+||+-.+- ...|...+.+++.
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 35799999999764 4456777777766
No 448
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.46 E-value=0.11 Score=43.40 Aligned_cols=38 Identities=18% Similarity=0.418 Sum_probs=23.6
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
++|+||||||||... ..++..+.... +.+++.+-...+
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~~~-~~~i~t~e~~~E 41 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINKNK-THHILTIEDPIE 41 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhcC-CcEEEEEcCCcc
Confidence 789999999999775 44444443332 235555554433
No 449
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.45 E-value=0.5 Score=48.17 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=15.6
Q ss_pred CcEEEeCCCCCchhHHHH
Q 015093 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~ 95 (413)
.+.++.||+|+|||..+-
T Consensus 204 ~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 569999999999997753
No 450
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.43 E-value=0.22 Score=43.64 Aligned_cols=38 Identities=16% Similarity=-0.020 Sum_probs=27.2
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
.|.-.+|.|++|+|||..++..+.+.+.. +.++++++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~---Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR---GNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC---CCcEEEEEe
Confidence 35568999999999998776655554432 347777773
No 451
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.43 E-value=0.28 Score=41.91 Aligned_cols=42 Identities=14% Similarity=0.051 Sum_probs=27.7
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccc---cCceeEEEEcccH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYE---SLQCQALVLAPTR 118 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~---~~~~~~lvl~P~~ 118 (413)
|+-+.|.+|+|+|||..++..+....... ....+++++..-.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 55689999999999987766555443332 0124677777643
No 452
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.40 E-value=0.46 Score=50.57 Aligned_cols=77 Identities=21% Similarity=0.223 Sum_probs=63.4
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC----CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-ccccCCCCCCCCEEE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR----DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 352 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d~~~~~~vi 352 (413)
.+.+++|.+|++..|.++++.+++. ++.+..+++..+..++.++++.+.+|..+|+|+|. .+...+++.++..+|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4568999999999999998888753 45777899999999999999999999999999996 455556677787777
Q ss_pred Ec
Q 015093 353 NY 354 (413)
Q Consensus 353 ~~ 354 (413)
+-
T Consensus 728 ID 729 (1147)
T PRK10689 728 VD 729 (1147)
T ss_pred Ee
Confidence 53
No 453
>PRK05636 replicative DNA helicase; Provisional
Probab=93.38 E-value=0.52 Score=45.49 Aligned_cols=113 Identities=14% Similarity=0.141 Sum_probs=54.4
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEE-CCcchHHHHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACV-GGTSVREDQRIL 155 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 155 (413)
|.-++|.|.||.|||..++-.+....... +..+++.+ ...-..|+..++-.... ++....+. |..+...+.+..
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a~~~--g~~v~~fS-lEMs~~ql~~R~ls~~s--~v~~~~i~~g~l~~~e~~~~~ 339 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSASIKH--NKASVIFS-LEMSKSEIVMRLLSAEA--EVRLSDMRGGKMDEDAWEKLV 339 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEE-eeCCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHHHHHHH
Confidence 44578999999999977654443332221 33566653 33334555444433221 22211122 222222222111
Q ss_pred -----hcCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 156 -----SAGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 156 -----~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
.....+.|- |.+.+....++.... ..+++||||=.|.+.
T Consensus 340 ~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~-~~~~lvvIDYLql~~ 388 (505)
T PRK05636 340 QRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQK-HDLKLIVVDYLQLMS 388 (505)
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcC
Confidence 123455553 334444333321111 237899999999774
No 454
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=0.065 Score=46.98 Aligned_cols=55 Identities=11% Similarity=0.085 Sum_probs=33.0
Q ss_pred cCccCCCCCHHHHHHHHhCCCC----------CCcHHHHhhhhh-----h-hCCCcEEEeCCCCCchhHHH
Q 015093 40 DSFDSMGLKENLLRGIYAYGFE----------KPSAIQQRGIVP-----F-CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~----------~~~~~Q~~~~~~-----~-~~~~~~lv~~~tGsGKT~~~ 94 (413)
.....++.+.++...|..+=+. ..|.+-.+.-.. + +...++++.+|||||||+.+
T Consensus 44 ~~~~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 44 KELSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLA 114 (408)
T ss_pred hhhccCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHH
Confidence 4555677888888888765332 122222222111 0 12346999999999999765
No 455
>PF12846 AAA_10: AAA-like domain
Probab=93.34 E-value=0.1 Score=46.83 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=26.5
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
+.+++|.|+||+|||......+...+.. +..++++=|..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~---g~~~~i~D~~g~ 40 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRR---GPRVVIFDPKGD 40 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHc---CCCEEEEcCCch
Confidence 4679999999999998776444443333 236677755433
No 456
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=93.33 E-value=0.14 Score=48.90 Aligned_cols=40 Identities=8% Similarity=0.270 Sum_probs=23.6
Q ss_pred CCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 180 PDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 180 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
...+++.|+||+|.+... ....+.+.+..-|....+++.|
T Consensus 117 ~~ryKVyiIDEvHMLS~~-afNALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQ-AFNALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred cccceEEEEecHHhhhHH-HHHHHhcccccCccCeEEEEec
Confidence 344799999999976433 3344444455555554444433
No 457
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.27 E-value=0.88 Score=43.37 Aligned_cols=51 Identities=24% Similarity=0.206 Sum_probs=33.3
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
|.-+++.+++|+|||...+..+...... +.+++|+..- +-..|......++
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~---g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN---QMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECc-CCHHHHHHHHHHc
Confidence 4458999999999998776554443222 2378888764 4455665555554
No 458
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.26 E-value=0.16 Score=52.65 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=70.5
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEE-EEeCccccCCCCCCCCEEEEcCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVL-ITTDLLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl-i~t~~~~~G~d~~~~~~vi~~~~ 356 (413)
...++|+|..-......+...+...++....-.++- +-...+..|++ ++++ +-++..+.|+|+-...+|++.++
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~---d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~eP 1294 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETE---DFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEP 1294 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCc---chhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheecc
Confidence 446889998877767777777766665544333322 23444555655 5544 66788899999999999999999
Q ss_pred CCChhHHHhhhcccCCCCCc
Q 015093 357 PTQPENYLHRIGRSGRFGRK 376 (413)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~g~~ 376 (413)
..++..-.|.+||+.|.|+.
T Consensus 1295 iLN~~~E~QAigRvhRiGQ~ 1314 (1394)
T KOG0298|consen 1295 ILNPGDEAQAIGRVHRIGQK 1314 (1394)
T ss_pred ccCchHHHhhhhhhhhcccc
Confidence 99999999999999999975
No 459
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=1.3 Score=42.70 Aligned_cols=79 Identities=18% Similarity=0.223 Sum_probs=44.5
Q ss_pred ccEEEEccchhhhc-------cCcHHHHHHHHhhC---CCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCC
Q 015093 183 IRMFVLDEADEMLS-------RGFKDQIYDIFQHL---PGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEG 252 (413)
Q Consensus 183 ~~~iIiDE~h~~~~-------~~~~~~~~~~~~~~---~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (413)
..+|.+||++.+.- +.....++.++..+ .....+..+.||-.++.-+-.- .++-.
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAi---------------LRPGR 669 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAI---------------LRPGR 669 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhh---------------cCCCc
Confidence 57899999997652 11223344444333 3456788889997765432111 11111
Q ss_pred c-eEEEEEeCccccHHHHHHHHHHh
Q 015093 253 I-KQFHVNVDKEEWKLDTLCDLYET 276 (413)
Q Consensus 253 ~-~~~~~~~~~~~~~~~~l~~~~~~ 276 (413)
+ ...++.++...++...|..+.+.
T Consensus 670 lDk~LyV~lPn~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 670 LDKLLYVGLPNAEERVAILKTITKN 694 (802)
T ss_pred cCceeeecCCCHHHHHHHHHHHhcc
Confidence 2 23445556666777777766664
No 460
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.19 E-value=0.33 Score=49.52 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=15.5
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+.+++.||+|+|||..+
T Consensus 487 ~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999775
No 461
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.12 E-value=0.54 Score=43.61 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=15.0
Q ss_pred cEEEeCCCCCchhHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~ 96 (413)
..++.||+|+|||..+..
T Consensus 41 ~~L~~G~~G~GKt~~a~~ 58 (367)
T PRK14970 41 ALLFCGPRGVGKTTCARI 58 (367)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 588999999999977643
No 462
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=93.09 E-value=0.43 Score=41.26 Aligned_cols=44 Identities=2% Similarity=0.093 Sum_probs=30.4
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCCh
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPP 225 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~ 225 (413)
...+++|+|++|.+... ....+.+++..-|.+.-++++|..+..
T Consensus 87 ~~~KV~II~~ae~m~~~-AaNaLLK~LEEPp~~t~fiLit~~~~~ 130 (261)
T PRK05818 87 NGKKIYIIYGIEKLNKQ-SANSLLKLIEEPPKNTYGIFTTRNENN 130 (261)
T ss_pred CCCEEEEeccHhhhCHH-HHHHHHHhhcCCCCCeEEEEEECChHh
Confidence 35799999999987433 456666777776666666666665543
No 463
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.06 E-value=0.17 Score=48.61 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=25.1
Q ss_pred cHHHHhhhhhhhCC-C-cEEEeCCCCCchhHHHHHHHHHhcc
Q 015093 64 SAIQQRGIVPFCKG-L-DVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 64 ~~~Q~~~~~~~~~~-~-~~lv~~~tGsGKT~~~~~~i~~~l~ 103 (413)
.+-|.+.+..+... + -+++.||||||||.+. ..++..+.
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~ 267 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLN 267 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccC
Confidence 34455555554443 3 3789999999999764 44555554
No 464
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=93.05 E-value=0.16 Score=54.30 Aligned_cols=56 Identities=27% Similarity=0.305 Sum_probs=45.7
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccc--cCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYE--SLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~--~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
.+++++|.|..|||||.+....++..+... -.-..+|++|-|++-+.++..++...
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 467899999999999999877777777664 23458999999999998888887654
No 465
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.04 E-value=0.28 Score=48.12 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=24.1
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEE
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVF 219 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~l 219 (413)
.+++|+||+-.-.+......+.+.+....++.-++.+
T Consensus 489 ~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiI 525 (529)
T TIGR02868 489 APILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVI 525 (529)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 5689999998777766666666666655444444443
No 466
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.01 E-value=0.22 Score=42.75 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=32.1
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
.|..+++.+++|+|||..+...+.+.+.+ +..+++++. .....+..+..+++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD---GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 45679999999999998765545444432 336667664 33344444444443
No 467
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.95 E-value=0.71 Score=42.88 Aligned_cols=78 Identities=21% Similarity=0.170 Sum_probs=42.2
Q ss_pred ccEEEEccchhhhccC--------cHHHHHHHHh----hCCCCceEEEEeeeCChhHHH-HHHHhcCCCEEEEecCCccc
Q 015093 183 IRMFVLDEADEMLSRG--------FKDQIYDIFQ----HLPGKIQVGVFSATMPPEALE-ITRKFMNKPVRILVKRDELT 249 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~--------~~~~~~~~~~----~~~~~~~~i~lSAT~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 249 (413)
.+++++||+|.+...- .......++. ....+-+++.++||-.++..+ .+++.+.
T Consensus 246 PsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~------------- 312 (428)
T KOG0740|consen 246 PSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFV------------- 312 (428)
T ss_pred CeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhh-------------
Confidence 5788899999876321 1111222221 222345889999997654333 3333222
Q ss_pred cCCceEEEEEeCccccHHHHHHHHHHhc
Q 015093 250 LEGIKQFHVNVDKEEWKLDTLCDLYETL 277 (413)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (413)
...+...+..+.....+..++++.
T Consensus 313 ----kr~yiplPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 313 ----KRLYIPLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred ----ceeeecCCCHHHHHHHHHHHHHhC
Confidence 223333444456667777777776
No 468
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.93 E-value=0.21 Score=42.78 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=24.8
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
..-++++++|||||+.+. .++...-.+...+ .++-+-.-++.
T Consensus 127 RGLviiVGaTGSGKSTtm-AaMi~yRN~~s~g-HIiTIEDPIEf 168 (375)
T COG5008 127 RGLVIIVGATGSGKSTTM-AAMIGYRNKNSTG-HIITIEDPIEF 168 (375)
T ss_pred CceEEEECCCCCCchhhH-HHHhcccccCCCC-ceEEecChHHH
Confidence 344899999999999764 3444433333333 55555444443
No 469
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.86 E-value=0.53 Score=45.60 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.6
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+.+++.||+|+|||..+
T Consensus 88 ~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 456999999999999765
No 470
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.85 E-value=0.49 Score=48.87 Aligned_cols=16 Identities=38% Similarity=0.416 Sum_probs=14.3
Q ss_pred EEEeCCCCCchhHHHH
Q 015093 80 VIQQAQSGTGKTATFC 95 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~ 95 (413)
+++.||||+|||..+-
T Consensus 599 ~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 599 FLLVGPSGVGKTETAL 614 (852)
T ss_pred EEEECCCCCCHHHHHH
Confidence 7999999999998764
No 471
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.82 E-value=0.25 Score=42.19 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=35.6
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
.|..+++.+++|+|||..++..+.+.+.+ +.++++++-. .-.++..+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~---g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN---GEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECC-CCHHHHHHHHHHc
Confidence 35568999999999998766555554433 3477777654 4466666666665
No 472
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.80 E-value=1.5 Score=41.72 Aligned_cols=89 Identities=19% Similarity=0.229 Sum_probs=50.0
Q ss_pred cccccCCCcccccccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhh-------hhhCC-----CcEEEeCCCCCc
Q 015093 22 NLLSEEGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIV-------PFCKG-----LDVIQQAQSGTG 89 (413)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~-------~~~~~-----~~~lv~~~tGsG 89 (413)
+.+....++|..++++..+. +|.+++..+.....|+-.-.+.-.+.++ .+... .++++.+|+|||
T Consensus 474 e~lkV~r~DFl~aL~dVkPA---FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sG 550 (744)
T KOG0741|consen 474 ENLKVTRGDFLNALEDVKPA---FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSG 550 (744)
T ss_pred hheeecHHHHHHHHHhcCcc---cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCC
Confidence 33444556777777666554 4778888887777766432222222221 11111 348999999999
Q ss_pred hhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 90 KTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 90 KT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
||..+.- +.....-+.+=++.|..
T Consensus 551 KTaLAA~-----iA~~S~FPFvKiiSpe~ 574 (744)
T KOG0741|consen 551 KTALAAK-----IALSSDFPFVKIISPED 574 (744)
T ss_pred hHHHHHH-----HHhhcCCCeEEEeChHH
Confidence 9955422 22223334556666643
No 473
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.79 E-value=0.84 Score=36.96 Aligned_cols=45 Identities=9% Similarity=0.120 Sum_probs=31.4
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
++|.|++|||||..+...+.. .+.+++++......-..+.+.+.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCHHHHHHHHH
Confidence 588999999999876544432 234788887777776666666554
No 474
>PRK13764 ATPase; Provisional
Probab=92.76 E-value=0.21 Score=48.88 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=20.0
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcc
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~ 103 (413)
.+++++++||||||||... .+++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTll-~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA-QALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 3567999999999999764 44555543
No 475
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=92.75 E-value=0.076 Score=56.87 Aligned_cols=93 Identities=26% Similarity=0.411 Sum_probs=75.7
Q ss_pred cEEEEEcCcccHHHHHHHHhhCC-CeeEeecCCCC-----------HHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCC
Q 015093 281 QSVIFVNTRRKVDWLTDQMRSRD-HTVSATHGDMD-----------QNSRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348 (413)
Q Consensus 281 ~~lIf~~~~~~a~~l~~~l~~~~-~~~~~~~~~~~-----------~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 348 (413)
-.++|++....+....+.+.... ..+..+.|... ...+++++..|....+++|++|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 46899999999988888887642 23333444332 2346778888999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHhhhcccCCC
Q 015093 349 SLVINYDLPTQPENYLHRIGRSGRF 373 (413)
Q Consensus 349 ~~vi~~~~~~s~~~~~Q~~GR~~R~ 373 (413)
+.++.++.|.....|+|..||+.+.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999999665
No 476
>PRK09087 hypothetical protein; Validated
Probab=92.71 E-value=0.4 Score=40.97 Aligned_cols=38 Identities=3% Similarity=0.037 Sum_probs=22.7
Q ss_pred cEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 184 RMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 184 ~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
+++++|++|.+. .....+..+++.....-+.+++|++-
T Consensus 89 ~~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~ 126 (226)
T PRK09087 89 GPVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRL 126 (226)
T ss_pred CeEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCC
Confidence 379999999763 23455666666665533334455553
No 477
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=92.69 E-value=0.28 Score=49.48 Aligned_cols=70 Identities=19% Similarity=0.147 Sum_probs=54.0
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc-CceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES-LQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~-~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
.|++-|++++... .+.++|.+..|||||.+...-+...+.... ....++.++=|+-.+.++.+++.++..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5788999999876 666999999999999988777766665532 223578888788778888888887764
No 478
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.69 E-value=0.18 Score=43.23 Aligned_cols=55 Identities=15% Similarity=0.301 Sum_probs=28.9
Q ss_pred ChHHHHHHHHcCCCCCCCccEEEEccchhhh-c----cCcHHHHHHHHhhCCC-CceEEEEeeeC
Q 015093 165 TPGRVFDMLRRQSLRPDYIRMFVLDEADEML-S----RGFKDQIYDIFQHLPG-KIQVGVFSATM 223 (413)
Q Consensus 165 T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~-~----~~~~~~~~~~~~~~~~-~~~~i~lSAT~ 223 (413)
+...+...+...... -+||+||+|.+. . ..+...+..++..... ....+.++++.
T Consensus 105 ~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 105 ALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp -HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 344445555443221 689999999987 2 2344556666666322 22334466665
No 479
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=92.68 E-value=1.8 Score=38.64 Aligned_cols=56 Identities=16% Similarity=0.301 Sum_probs=31.5
Q ss_pred HHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCC---CceEEEEeeeC
Q 015093 168 RVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPG---KIQVGVFSATM 223 (413)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~---~~~~i~lSAT~ 223 (413)
.++..+..+......--++|+||+|.+........+..++..... .+-++++|.-.
T Consensus 123 ~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 123 KLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 344444444333332346788999988777666666666655542 23345555444
No 480
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=92.64 E-value=0.25 Score=43.17 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=27.9
Q ss_pred EEEeCCCCCchhHHHHHHHHHhccc---ccCceeEEEEcccHHH
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDY---ESLQCQALVLAPTREL 120 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~---~~~~~~~lvl~P~~~l 120 (413)
.=|+|+.|+|||...+..++..... ...+.+++|+.-....
T Consensus 41 tEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f 84 (256)
T PF08423_consen 41 TEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTF 84 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS
T ss_pred EEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCC
Confidence 5689999999998776655554432 2334578888765443
No 481
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=92.63 E-value=0.43 Score=41.09 Aligned_cols=42 Identities=17% Similarity=0.041 Sum_probs=27.6
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccc---cCceeEEEEccc
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYE---SLQCQALVLAPT 117 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~---~~~~~~lvl~P~ 117 (413)
.|.-+.+.+|+|+|||..++..+....... ..+..++++..-
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e 62 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTE 62 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCC
Confidence 355589999999999988766655433222 112467777753
No 482
>PRK05595 replicative DNA helicase; Provisional
Probab=92.56 E-value=0.35 Score=46.07 Aligned_cols=116 Identities=16% Similarity=0.095 Sum_probs=57.4
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEE-CCcchHHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACV-GGTSVREDQ 152 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 152 (413)
+..|.-++|.|.||.|||..++-.+...... .+.+++++.. ..-..|+..++-.... ++....+. +......+.
T Consensus 198 ~~~g~liviaarpg~GKT~~al~ia~~~a~~--~g~~vl~fSl-Ems~~~l~~R~~a~~~--~v~~~~~~~~~l~~~e~~ 272 (444)
T PRK05595 198 FQKGDMILIAARPSMGKTTFALNIAEYAALR--EGKSVAIFSL-EMSKEQLAYKLLCSEA--NVDMLRLRTGNLEDKDWE 272 (444)
T ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHHHH--cCCcEEEEec-CCCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHHHH
Confidence 3345558899999999998776555432212 1336776654 3345555555433322 22222121 222222221
Q ss_pred HHHh-----cCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 153 RILS-----AGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 153 ~~~~-----~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
.... ....+.|- |++.+...+++.... ..+++||||=.|.+.
T Consensus 273 ~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~-~~~~~vvIDylql~~ 324 (444)
T PRK05595 273 NIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKIE-HGIDMILIDYLQLMS 324 (444)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEeHHHhcc
Confidence 1111 12344443 334444333332111 237899999999775
No 483
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=92.54 E-value=0.16 Score=49.96 Aligned_cols=54 Identities=26% Similarity=0.442 Sum_probs=45.2
Q ss_pred HHHHhcCCCeEEEEeCccccCCCCCCCCEE--------EEcCCCCChhHHHhhhcccCCCCC
Q 015093 322 MREFRSGSSRVLITTDLLARGIDVQQVSLV--------INYDLPTQPENYLHRIGRSGRFGR 375 (413)
Q Consensus 322 ~~~f~~~~~~vli~t~~~~~G~d~~~~~~v--------i~~~~~~s~~~~~Q~~GR~~R~g~ 375 (413)
.+.|-+|+..|-|-+.+++.||.+..-+-| |-+.+|||...-+|.+||++|.++
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQ 911 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQ 911 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccc
Confidence 356788999999999999999998754433 457899999999999999999865
No 484
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.45 E-value=0.35 Score=40.14 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=36.1
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccc-------cCceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYE-------SLQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-------~~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
.|.-+++.||+|+|||...+..+...+... ..+.+++++..-.. ..++.+.+.....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 566799999999999988766555554311 13457888876555 5567777776653
No 485
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=92.28 E-value=0.18 Score=44.12 Aligned_cols=40 Identities=10% Similarity=0.253 Sum_probs=25.1
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
++|.||||+||+.. +-.++..-.-......+++|+|.+.-
T Consensus 90 ~~VYGPTG~GKSqL-lRNLis~~lI~P~PETVfFItP~~~m 129 (369)
T PF02456_consen 90 GVVYGPTGSGKSQL-LRNLISCQLIQPPPETVFFITPQKDM 129 (369)
T ss_pred EEEECCCCCCHHHH-HHHhhhcCcccCCCCceEEECCCCCC
Confidence 78899999999953 22222211112223479999998754
No 486
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=92.24 E-value=1.5 Score=39.74 Aligned_cols=39 Identities=5% Similarity=0.220 Sum_probs=26.6
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
...+++|+||+|.+... -...+.+.+...|+...++++|
T Consensus 92 ~~~kv~iI~~ad~m~~~-a~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQ-AQNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred CCceEEEEechhhcCHH-HHHHHHHHhcCCCCCeEEEEEe
Confidence 34689999999987432 3556667777766666566554
No 487
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.20 E-value=0.46 Score=44.94 Aligned_cols=46 Identities=24% Similarity=0.334 Sum_probs=28.2
Q ss_pred ccEEEEccchhhhccC------c-HHHHHHH---HhhCCCCceEEEEeeeCChhHH
Q 015093 183 IRMFVLDEADEMLSRG------F-KDQIYDI---FQHLPGKIQVGVFSATMPPEAL 228 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~------~-~~~~~~~---~~~~~~~~~~i~lSAT~~~~~~ 228 (413)
.++|.|||.+.+.... + ...++.+ +.-+.++--+|.+.||--++..
T Consensus 397 PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~L 452 (752)
T KOG0734|consen 397 PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEAL 452 (752)
T ss_pred CeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhh
Confidence 5789999999876432 1 1122222 2334556679999999765443
No 488
>PRK04132 replication factor C small subunit; Provisional
Probab=92.19 E-value=0.85 Score=46.63 Aligned_cols=38 Identities=13% Similarity=0.292 Sum_probs=27.4
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEee
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSA 221 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (413)
+.++|+||||.+.. .-...+.+++...+..+.+++.+-
T Consensus 631 ~KVvIIDEaD~Lt~-~AQnALLk~lEep~~~~~FILi~N 668 (846)
T PRK04132 631 FKIIFLDEADALTQ-DAQQALRRTMEMFSSNVRFILSCN 668 (846)
T ss_pred CEEEEEECcccCCH-HHHHHHHHHhhCCCCCeEEEEEeC
Confidence 57999999998843 346677777777777776665533
No 489
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.18 E-value=1.2 Score=43.43 Aligned_cols=54 Identities=26% Similarity=0.342 Sum_probs=34.1
Q ss_pred cccCccCCCCCHHHHHHHHh---CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHH
Q 015093 38 VYDSFDSMGLKENLLRGIYA---YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~---~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
+-.+|++.|=-+++...+++ +....|-.+.+-.+ ...+.+|+.+|+|.|||+++
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi---~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI---SPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC---CCCceEEEECCCCcchHHHH
Confidence 34566666655555555543 33334444444443 23577999999999999876
No 490
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.11 E-value=1.4 Score=38.14 Aligned_cols=54 Identities=17% Similarity=0.108 Sum_probs=32.3
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcc---------cccCceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLD---------YESLQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~---------~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
-.++.+|.|+|||..++..++.... ......+++|+.--. -..+..+++..+..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed-~~~~i~~Rl~~i~~ 65 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAED-PREEIHRRLEAILQ 65 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCC-CHHHHHHHHHHHHh
Confidence 3689999999999887666554321 112344788888322 22344445555544
No 491
>PRK12608 transcription termination factor Rho; Provisional
Probab=92.09 E-value=1.4 Score=40.48 Aligned_cols=38 Identities=21% Similarity=0.173 Sum_probs=25.5
Q ss_pred HHHhhhhhhh---CCCcEEEeCCCCCchhHHHHHHHHHhccc
Q 015093 66 IQQRGIVPFC---KGLDVIQQAQSGTGKTATFCSGILQQLDY 104 (413)
Q Consensus 66 ~Q~~~~~~~~---~~~~~lv~~~tGsGKT~~~~~~i~~~l~~ 104 (413)
.-.++++.+. +|+..+|.||.|+|||...- -+...+.+
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~-~la~~i~~ 159 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQ-QIAAAVAA 159 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHH-HHHHHHHh
Confidence 3445565554 57889999999999997643 34444433
No 492
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.03 E-value=0.18 Score=44.19 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=21.8
Q ss_pred hhhhhhhCCCcEEEeCCCCCchhHHHH
Q 015093 69 RGIVPFCKGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 69 ~~~~~~~~~~~~lv~~~tGsGKT~~~~ 95 (413)
+++..+..++.+++.||+|+|||..+.
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 444556678899999999999998764
No 493
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.01 E-value=1 Score=46.81 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.5
Q ss_pred CcEEEeCCCCCchhHHHH
Q 015093 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~ 95 (413)
++.++.||+|.|||..+-
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 569999999999997764
No 494
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.99 E-value=4.8 Score=40.69 Aligned_cols=105 Identities=17% Similarity=0.159 Sum_probs=62.4
Q ss_pred CcEEEEEcCcccHHHHHHHHhhCC-------CeeEeecCCCCHHHHHHHHHHHhc--------CCCeEEEEeCccccCCC
Q 015093 280 TQSVIFVNTRRKVDWLTDQMRSRD-------HTVSATHGDMDQNSRDIIMREFRS--------GSSRVLITTDLLARGID 344 (413)
Q Consensus 280 ~~~lIf~~~~~~a~~l~~~l~~~~-------~~~~~~~~~~~~~~r~~~~~~f~~--------~~~~vli~t~~~~~G~d 344 (413)
..+|||.|+....+.+...++..+ ..-..+--. +..+-.+++..|.+ |..-+.||--..++|+|
T Consensus 562 ~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEPr-~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlD 640 (945)
T KOG1132|consen 562 YGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEPR-SKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLD 640 (945)
T ss_pred cceEEeccchHHHHHHHHHHHcchHHHHhhcccCceeccC-CccchHHHHHHHHHHhhCccccceEEEEEecccccCCCC
Confidence 349999999987777755554321 111112111 23333444444432 22234466668999999
Q ss_pred CCC--CCEEEEcCCCC--------------------------------------ChhHHHhhhcccCCCCCcceEEEEec
Q 015093 345 VQQ--VSLVINYDLPT--------------------------------------QPENYLHRIGRSGRFGRKGVAINFVT 384 (413)
Q Consensus 345 ~~~--~~~vi~~~~~~--------------------------------------s~~~~~Q~~GR~~R~g~~g~~~~~~~ 384 (413)
+.+ .+.||..+.|. ....+-|.+||+-|+.++=-++++++
T Consensus 641 FsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~D 720 (945)
T KOG1132|consen 641 FSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILCD 720 (945)
T ss_pred ccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEee
Confidence 974 77788888762 11235799999999877644444554
Q ss_pred c
Q 015093 385 R 385 (413)
Q Consensus 385 ~ 385 (413)
.
T Consensus 721 ~ 721 (945)
T KOG1132|consen 721 D 721 (945)
T ss_pred c
Confidence 4
No 495
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=91.95 E-value=0.24 Score=42.40 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=23.5
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
+++|.|++|||||... .-++..+...- ..+++++|
T Consensus 15 r~viIG~sGSGKT~li-~~lL~~~~~~f--~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLI-KSLLYYLRHKF--DHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHH-HHHHHhhcccC--CEEEEEec
Confidence 5899999999999654 44444433322 36677777
No 496
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=91.95 E-value=1.7 Score=43.76 Aligned_cols=39 Identities=23% Similarity=0.172 Sum_probs=25.1
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHH
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELA 121 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~ 121 (413)
++++.||||.|||..+-..+ ..+.... ..++-....+-.
T Consensus 523 sFlF~GPTGVGKTELAkaLA-~~Lfg~e---~aliR~DMSEy~ 561 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALA-EALFGDE---QALIRIDMSEYM 561 (786)
T ss_pred EEEeeCCCcccHHHHHHHHH-HHhcCCC---ccceeechHHHH
Confidence 58999999999998874333 3333222 566666655543
No 497
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=91.80 E-value=0.23 Score=42.55 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=28.3
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
++++.|.|.||||||...-. +++.+.. ..+.+++|+=|.-+
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~-ll~~l~~-~~~~~~ii~D~~GE 63 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKV-LLEELLK-KKGAKVIIFDPHGE 63 (229)
T ss_pred cceEEEECCCCCCHHHHHHH-HHHHHHh-cCCCCEEEEcCCCc
Confidence 57899999999999987644 4444432 22347788777654
No 498
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=91.79 E-value=0.21 Score=44.97 Aligned_cols=28 Identities=18% Similarity=0.458 Sum_probs=20.1
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhc
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l 102 (413)
+..+.++++.||||||||... .+++..+
T Consensus 141 v~~~~~ili~G~tGsGKTTll-~al~~~~ 168 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFL-KSLVDEI 168 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHH-HHHHccC
Confidence 345778999999999999654 3344333
No 499
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=91.78 E-value=0.27 Score=41.30 Aligned_cols=45 Identities=16% Similarity=0.145 Sum_probs=23.3
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
+.+..+++|.|.||||||......+...+........-++++..+
T Consensus 35 l~~~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 35 LKKNPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp GGGS-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred cCCCceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 334558999999999999876544444443222222334444433
No 500
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.77 E-value=0.19 Score=46.97 Aligned_cols=47 Identities=26% Similarity=0.237 Sum_probs=34.2
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
++++.||||||||.++++|-+-.. ...++|+=|.-++........+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-----~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----PGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-----CCCEEEEccchhHHHHHHHHHHH
Confidence 478999999999988876654332 23788888888888766655444
Done!