Query 015093
Match_columns 413
No_of_seqs 181 out of 2248
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 06:33:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 5.1E-61 1.7E-65 452.2 43.8 374 37-412 53-434 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 5.4E-61 1.8E-65 451.2 41.5 377 37-413 34-410 (410)
3 3eiq_A Eukaryotic initiation f 100.0 7.1E-61 2.4E-65 451.1 38.6 385 29-413 29-414 (414)
4 2i4i_A ATP-dependent RNA helic 100.0 1.1E-58 3.8E-63 436.5 40.6 375 37-412 12-409 (417)
5 1s2m_A Putative ATP-dependent 100.0 4.9E-58 1.7E-62 429.7 42.3 372 39-412 20-391 (400)
6 1fuu_A Yeast initiation factor 100.0 8.8E-60 3E-64 440.8 23.5 385 28-413 9-393 (394)
7 1xti_A Probable ATP-dependent 100.0 7.7E-57 2.6E-61 420.4 43.1 369 40-409 8-381 (391)
8 3pey_A ATP-dependent RNA helic 100.0 2.4E-56 8.3E-61 417.7 39.5 367 38-408 3-380 (395)
9 3fht_A ATP-dependent RNA helic 100.0 7.2E-56 2.5E-60 416.8 39.5 371 38-411 23-405 (412)
10 1hv8_A Putative ATP-dependent 100.0 6.4E-55 2.2E-59 404.0 42.8 360 39-406 5-365 (367)
11 3fmp_B ATP-dependent RNA helic 100.0 1E-55 3.4E-60 422.8 21.2 369 39-410 91-471 (479)
12 2z0m_A 337AA long hypothetical 100.0 3.4E-52 1.2E-56 381.1 37.5 336 47-400 1-336 (337)
13 3fho_A ATP-dependent RNA helic 100.0 3.6E-54 1.2E-58 413.1 24.5 366 41-410 120-495 (508)
14 3sqw_A ATP-dependent RNA helic 100.0 1.6E-52 5.3E-57 408.9 35.4 358 46-403 27-415 (579)
15 3i5x_A ATP-dependent RNA helic 100.0 1.9E-52 6.4E-57 408.3 35.1 357 47-403 79-466 (563)
16 2v1x_A ATP-dependent DNA helic 100.0 1.4E-50 4.7E-55 391.5 32.4 338 44-394 25-382 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 8E-50 2.7E-54 382.7 32.9 338 40-394 2-351 (523)
18 3oiy_A Reverse gyrase helicase 100.0 2E-48 6.8E-53 365.7 27.9 325 51-399 10-376 (414)
19 2zj8_A DNA helicase, putative 100.0 4.8E-47 1.6E-51 379.0 28.4 350 41-406 2-405 (720)
20 2va8_A SSO2462, SKI2-type heli 100.0 2.9E-46 9.9E-51 373.6 32.9 350 40-405 8-426 (715)
21 2p6r_A Afuhel308 helicase; pro 100.0 7.9E-47 2.7E-51 376.5 23.3 332 41-387 2-389 (702)
22 2ykg_A Probable ATP-dependent 100.0 1.2E-46 4E-51 376.6 22.8 353 52-406 3-540 (696)
23 4a2p_A RIG-I, retinoic acid in 100.0 2.6E-46 8.9E-51 365.2 24.2 332 59-392 4-514 (556)
24 3l9o_A ATP-dependent RNA helic 100.0 1.2E-45 4.3E-50 378.3 28.5 332 40-387 162-598 (1108)
25 3tbk_A RIG-I helicase domain; 100.0 3.5E-45 1.2E-49 357.2 28.1 331 62-394 4-515 (555)
26 1wp9_A ATP-dependent RNA helic 100.0 1.4E-44 4.9E-49 347.5 31.8 324 62-390 9-479 (494)
27 2xgj_A ATP-dependent RNA helic 100.0 6.4E-44 2.2E-48 362.7 36.2 320 55-391 80-505 (1010)
28 4a2q_A RIG-I, retinoic acid in 100.0 1.2E-44 4.1E-49 365.1 29.4 335 56-392 242-755 (797)
29 4a2w_A RIG-I, retinoic acid in 100.0 1.4E-43 4.9E-48 360.6 28.1 336 53-390 239-753 (936)
30 4ddu_A Reverse gyrase; topoiso 100.0 3.6E-43 1.2E-47 360.1 28.2 321 57-399 74-503 (1104)
31 4a4z_A Antiviral helicase SKI2 100.0 1.9E-42 6.5E-47 352.0 28.6 320 58-394 36-502 (997)
32 4gl2_A Interferon-induced heli 100.0 6.1E-43 2.1E-47 349.8 21.6 322 62-386 7-519 (699)
33 1gku_B Reverse gyrase, TOP-RG; 100.0 6E-43 2.1E-47 358.8 21.3 322 55-400 51-468 (1054)
34 1gm5_A RECG; helicase, replica 100.0 2.2E-42 7.4E-47 341.0 22.6 322 48-389 355-700 (780)
35 4f92_B U5 small nuclear ribonu 100.0 7E-41 2.4E-45 354.5 34.0 341 46-392 910-1314(1724)
36 1tf5_A Preprotein translocase 100.0 1.7E-40 5.7E-45 321.3 30.4 322 57-388 79-547 (844)
37 2oca_A DAR protein, ATP-depend 100.0 5.9E-42 2E-46 330.2 19.8 310 61-384 112-453 (510)
38 2eyq_A TRCF, transcription-rep 100.0 4.7E-40 1.6E-44 339.2 35.2 322 45-386 586-922 (1151)
39 4f92_B U5 small nuclear ribonu 100.0 8.5E-41 2.9E-45 353.9 26.0 330 59-393 76-480 (1724)
40 2fwr_A DNA repair protein RAD2 100.0 1.7E-40 5.9E-45 316.9 21.4 296 62-389 93-457 (472)
41 2whx_A Serine protease/ntpase/ 100.0 4.9E-41 1.7E-45 325.8 14.3 323 45-407 155-502 (618)
42 2fsf_A Preprotein translocase 100.0 1.3E-38 4.4E-43 307.3 29.1 322 58-389 71-586 (853)
43 1nkt_A Preprotein translocase 100.0 3.7E-38 1.3E-42 304.5 31.0 324 57-390 107-621 (922)
44 2xau_A PRE-mRNA-splicing facto 100.0 1.9E-39 6.6E-44 322.2 20.8 336 37-388 69-445 (773)
45 2jlq_A Serine protease subunit 100.0 5.2E-39 1.8E-43 303.0 18.8 287 59-385 1-310 (451)
46 2wv9_A Flavivirin protease NS2 100.0 8.9E-39 3E-43 311.7 16.2 306 54-398 202-548 (673)
47 3h1t_A Type I site-specific re 100.0 4.4E-38 1.5E-42 308.0 21.0 312 62-388 178-561 (590)
48 3o8b_A HCV NS3 protease/helica 100.0 9.2E-39 3.2E-43 306.8 14.3 279 62-390 217-518 (666)
49 1yks_A Genome polyprotein [con 100.0 1.9E-38 6.4E-43 297.7 16.0 297 73-408 4-324 (440)
50 2z83_A Helicase/nucleoside tri 100.0 8.3E-38 2.9E-42 295.2 16.0 275 69-386 13-313 (459)
51 3dmq_A RNA polymerase-associat 100.0 2.3E-37 7.8E-42 315.4 19.4 333 61-398 152-625 (968)
52 2v6i_A RNA helicase; membrane, 100.0 4.9E-37 1.7E-41 287.6 19.8 269 76-383 1-288 (431)
53 1z63_A Helicase of the SNF2/RA 100.0 8.2E-36 2.8E-40 286.7 26.0 312 62-388 37-455 (500)
54 3fe2_A Probable ATP-dependent 100.0 4.4E-35 1.5E-39 254.0 24.5 211 36-246 25-240 (242)
55 1vec_A ATP-dependent RNA helic 100.0 1.2E-34 4.1E-39 245.4 25.6 202 40-241 3-205 (206)
56 1qde_A EIF4A, translation init 100.0 5.3E-35 1.8E-39 250.9 22.9 215 31-246 5-219 (224)
57 3ber_A Probable ATP-dependent 100.0 1E-34 3.6E-39 252.1 24.7 208 36-243 39-247 (249)
58 3bor_A Human initiation factor 100.0 5E-35 1.7E-39 252.7 22.0 215 29-243 19-234 (237)
59 1q0u_A Bstdead; DEAD protein, 100.0 1E-34 3.4E-39 248.0 21.1 206 40-245 4-213 (219)
60 2oxc_A Probable ATP-dependent 100.0 5.7E-34 1.9E-38 245.1 23.1 205 37-242 21-227 (230)
61 1wrb_A DJVLGB; RNA helicase, D 100.0 3.8E-34 1.3E-38 250.0 21.2 217 38-254 21-250 (253)
62 3rc3_A ATP-dependent RNA helic 100.0 6.3E-34 2.2E-38 276.7 24.8 282 73-394 151-452 (677)
63 3iuy_A Probable ATP-dependent 100.0 7E-34 2.4E-38 244.4 22.1 207 35-242 14-227 (228)
64 3mwy_W Chromo domain-containin 100.0 7.8E-34 2.7E-38 285.5 26.0 331 62-400 236-700 (800)
65 2gxq_A Heat resistant RNA depe 100.0 2.4E-33 8.1E-38 237.6 24.7 201 41-243 2-205 (207)
66 1t6n_A Probable ATP-dependent 100.0 2.1E-33 7.2E-38 240.1 24.1 204 39-242 13-219 (220)
67 1z3i_X Similar to RAD54-like; 100.0 7.6E-33 2.6E-37 271.6 31.4 320 62-388 55-530 (644)
68 2pl3_A Probable ATP-dependent 100.0 5.6E-33 1.9E-37 240.1 25.3 206 38-244 23-233 (236)
69 3jux_A Protein translocase sub 100.0 4.7E-32 1.6E-36 256.5 32.5 322 58-390 72-591 (822)
70 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 3.2E-33 1.1E-37 282.7 24.5 310 62-384 271-707 (1038)
71 3ly5_A ATP-dependent RNA helic 100.0 7.8E-33 2.7E-37 242.2 22.2 199 40-238 52-257 (262)
72 3fmo_B ATP-dependent RNA helic 100.0 8.7E-33 3E-37 246.2 22.1 203 39-244 91-298 (300)
73 3dkp_A Probable ATP-dependent 100.0 9.1E-32 3.1E-36 233.9 19.5 210 37-246 22-243 (245)
74 2ipc_A Preprotein translocase 100.0 4.9E-27 1.7E-31 226.5 34.5 318 58-389 76-701 (997)
75 1fuk_A Eukaryotic initiation f 100.0 1.9E-28 6.6E-33 198.9 19.3 162 252-413 3-164 (165)
76 2hjv_A ATP-dependent RNA helic 100.0 1.9E-27 6.6E-32 192.4 20.0 158 248-406 5-162 (163)
77 2rb4_A ATP-dependent RNA helic 100.0 9.1E-28 3.1E-32 196.9 18.1 164 248-411 3-172 (175)
78 1c4o_A DNA nucleotide excision 100.0 2.4E-26 8.3E-31 225.2 30.6 129 265-394 423-558 (664)
79 2p6n_A ATP-dependent RNA helic 100.0 1.1E-27 3.6E-32 198.4 16.6 178 233-412 10-188 (191)
80 1t5i_A C_terminal domain of A 100.0 2.9E-27 9.9E-32 192.9 17.4 159 250-409 3-162 (172)
81 2jgn_A DBX, DDX3, ATP-dependen 100.0 1.8E-27 6.2E-32 196.3 16.2 165 247-412 14-179 (185)
82 2d7d_A Uvrabc system protein B 99.9 5.3E-26 1.8E-30 222.7 27.1 187 213-409 386-588 (661)
83 3eaq_A Heat resistant RNA depe 99.9 4.8E-26 1.6E-30 192.2 18.2 145 263-407 15-159 (212)
84 3i32_A Heat resistant RNA depe 99.9 3.8E-25 1.3E-29 195.1 18.6 154 253-407 3-156 (300)
85 2yjt_D ATP-dependent RNA helic 99.9 4.8E-27 1.7E-31 191.5 0.0 156 253-408 4-159 (170)
86 3b6e_A Interferon-induced heli 99.9 6.9E-25 2.4E-29 186.8 12.0 165 57-222 28-216 (216)
87 2vl7_A XPD; helicase, unknown 99.9 5.5E-24 1.9E-28 204.6 15.5 102 278-385 383-520 (540)
88 3crv_A XPD/RAD3 related DNA he 99.9 6.2E-22 2.1E-26 191.1 28.7 308 62-386 3-531 (551)
89 1rif_A DAR protein, DNA helica 99.9 5E-23 1.7E-27 182.3 10.5 154 62-227 113-266 (282)
90 3llm_A ATP-dependent RNA helic 99.9 4.3E-21 1.5E-25 165.0 15.0 171 48-227 47-222 (235)
91 4a15_A XPD helicase, ATP-depen 99.9 2.1E-19 7E-24 174.7 26.0 81 62-144 3-87 (620)
92 2fz4_A DNA repair protein RAD2 99.9 1.6E-20 5.3E-25 161.1 16.1 138 62-226 93-231 (237)
93 1z5z_A Helicase of the SNF2/RA 99.8 2.3E-18 7.9E-23 150.0 11.6 126 263-388 94-226 (271)
94 1w36_D RECD, exodeoxyribonucle 98.9 6.7E-09 2.3E-13 101.0 9.8 160 50-222 136-298 (608)
95 4b3f_X DNA-binding protein smu 98.6 9.1E-08 3.1E-12 94.1 9.1 67 62-131 189-256 (646)
96 2gk6_A Regulator of nonsense t 98.5 9.3E-07 3.2E-11 86.4 14.0 69 61-131 179-247 (624)
97 3e1s_A Exodeoxyribonuclease V, 98.5 5.5E-07 1.9E-11 86.6 11.9 121 62-220 189-313 (574)
98 2xzl_A ATP-dependent helicase 98.5 1.1E-06 3.9E-11 87.7 14.3 69 61-131 359-427 (802)
99 3upu_A ATP-dependent DNA helic 98.5 6.2E-07 2.1E-11 84.4 11.1 69 57-127 20-93 (459)
100 3lfu_A DNA helicase II; SF1 he 98.4 8.2E-06 2.8E-10 80.5 18.3 70 61-132 8-78 (647)
101 2wjy_A Regulator of nonsense t 98.4 2.1E-06 7.3E-11 85.6 13.9 69 61-131 355-423 (800)
102 3hgt_A HDA1 complex subunit 3; 98.0 9.3E-05 3.2E-09 64.6 13.1 124 263-391 107-242 (328)
103 2o0j_A Terminase, DNA packagin 97.7 0.00085 2.9E-08 60.7 15.1 72 62-134 163-234 (385)
104 3vkw_A Replicase large subunit 97.7 0.00012 4.1E-09 67.1 8.8 107 79-222 163-269 (446)
105 3cpe_A Terminase, DNA packagin 97.5 0.0016 5.6E-08 63.0 14.5 73 62-135 163-235 (592)
106 1uaa_A REP helicase, protein ( 97.4 0.00039 1.3E-08 68.7 9.3 70 62-133 2-72 (673)
107 1a5t_A Delta prime, HOLB; zinc 97.4 0.00039 1.3E-08 62.3 8.4 39 63-101 3-48 (334)
108 1xx6_A Thymidine kinase; NESG, 97.3 0.00043 1.5E-08 56.2 6.6 39 77-118 8-46 (191)
109 2orw_A Thymidine kinase; TMTK, 97.3 0.00082 2.8E-08 54.4 8.0 39 77-118 3-41 (184)
110 2j9r_A Thymidine kinase; TK1, 97.3 0.00081 2.8E-08 55.2 7.9 40 77-119 28-67 (214)
111 2b8t_A Thymidine kinase; deoxy 97.3 0.00025 8.6E-09 59.1 4.8 90 77-194 12-101 (223)
112 3u4q_A ATP-dependent helicase/ 97.2 0.00073 2.5E-08 71.3 9.1 104 62-174 10-117 (1232)
113 3ec2_A DNA replication protein 97.2 0.0016 5.4E-08 52.5 8.9 19 76-94 37-55 (180)
114 2orv_A Thymidine kinase; TP4A 97.1 0.0014 4.9E-08 54.2 7.6 40 77-119 19-58 (234)
115 2chg_A Replication factor C sm 97.1 0.0052 1.8E-07 51.0 11.5 41 181-222 101-141 (226)
116 1pjr_A PCRA; DNA repair, DNA r 97.0 0.0011 3.9E-08 65.8 7.8 70 61-132 10-80 (724)
117 1l8q_A Chromosomal replication 97.0 0.0034 1.2E-07 55.9 10.2 37 77-116 37-73 (324)
118 2v1u_A Cell division control p 96.9 0.005 1.7E-07 56.2 10.0 18 77-94 44-61 (387)
119 3co5_A Putative two-component 96.8 0.0052 1.8E-07 47.3 8.5 20 75-94 25-44 (143)
120 3e2i_A Thymidine kinase; Zn-bi 96.8 0.0013 4.4E-08 53.9 5.0 40 77-119 28-67 (219)
121 3te6_A Regulatory protein SIR3 96.8 0.0051 1.8E-07 54.1 9.3 39 183-224 133-174 (318)
122 3n70_A Transport activator; si 96.8 0.0039 1.4E-07 48.1 7.7 38 184-222 78-115 (145)
123 2kjq_A DNAA-related protein; s 96.8 0.0007 2.4E-08 52.7 3.1 19 76-94 35-53 (149)
124 1w4r_A Thymidine kinase; type 96.7 0.0028 9.7E-08 51.1 6.3 38 77-117 20-57 (195)
125 2z4s_A Chromosomal replication 96.7 0.0072 2.4E-07 56.2 10.0 38 78-116 131-168 (440)
126 1d2n_A N-ethylmaleimide-sensit 96.5 0.04 1.4E-06 47.4 12.9 18 78-95 65-82 (272)
127 2qby_B CDC6 homolog 3, cell di 96.5 0.0049 1.7E-07 56.2 7.4 37 185-222 136-173 (384)
128 2zpa_A Uncharacterized protein 96.5 0.0059 2E-07 59.0 7.9 113 62-224 175-289 (671)
129 3u61_B DNA polymerase accessor 96.5 0.0086 3E-07 53.2 8.4 38 182-219 105-142 (324)
130 1sxj_D Activator 1 41 kDa subu 96.4 0.01 3.6E-07 53.3 8.6 41 182-223 133-173 (353)
131 3syl_A Protein CBBX; photosynt 96.4 0.0035 1.2E-07 55.3 5.3 19 77-95 67-85 (309)
132 3bos_A Putative DNA replicatio 96.3 0.0061 2.1E-07 51.4 6.3 19 76-94 51-69 (242)
133 1sxj_E Activator 1 40 kDa subu 96.3 0.019 6.6E-07 51.6 9.8 42 182-224 134-175 (354)
134 1iqp_A RFCS; clamp loader, ext 96.2 0.018 6.1E-07 51.1 9.3 39 182-221 110-148 (327)
135 3h4m_A Proteasome-activating n 96.2 0.038 1.3E-06 47.9 11.0 19 76-94 50-68 (285)
136 1fnn_A CDC6P, cell division co 96.2 0.0063 2.1E-07 55.6 6.1 16 79-94 46-61 (389)
137 3pfi_A Holliday junction ATP-d 96.0 0.04 1.4E-06 49.2 10.1 17 78-94 56-72 (338)
138 2w58_A DNAI, primosome compone 95.9 0.027 9.1E-07 46.1 8.0 18 78-95 55-72 (202)
139 1sxj_B Activator 1 37 kDa subu 95.9 0.018 6.3E-07 50.9 7.5 37 183-220 108-144 (323)
140 3kl4_A SRP54, signal recogniti 95.9 0.042 1.4E-06 50.5 9.8 130 79-234 99-234 (433)
141 2gno_A DNA polymerase III, gam 95.9 0.024 8.1E-07 49.8 7.9 38 182-220 82-119 (305)
142 1g5t_A COB(I)alamin adenosyltr 95.8 0.044 1.5E-06 44.2 8.6 134 77-229 28-169 (196)
143 2qby_A CDC6 homolog 1, cell di 95.8 0.018 6.2E-07 52.3 7.2 18 77-94 45-62 (386)
144 2p65_A Hypothetical protein PF 95.7 0.036 1.2E-06 44.3 7.8 19 77-95 43-61 (187)
145 4b4t_J 26S protease regulatory 95.6 0.12 4.1E-06 46.8 11.6 53 39-94 144-199 (405)
146 3eie_A Vacuolar protein sortin 95.6 0.052 1.8E-06 48.1 9.3 52 40-94 15-68 (322)
147 1njg_A DNA polymerase III subu 95.5 0.1 3.4E-06 43.6 10.4 38 183-221 127-164 (250)
148 1sxj_C Activator 1 40 kDa subu 95.4 0.05 1.7E-06 48.6 8.5 38 182-220 110-147 (340)
149 3dm5_A SRP54, signal recogniti 95.3 0.19 6.5E-06 46.2 12.0 56 79-140 102-159 (443)
150 1jr3_A DNA polymerase III subu 95.2 0.066 2.3E-06 48.4 8.8 38 182-220 119-156 (373)
151 2qz4_A Paraplegin; AAA+, SPG7, 95.2 0.2 6.8E-06 42.6 11.3 18 77-94 39-56 (262)
152 2chq_A Replication factor C sm 95.0 0.015 5.2E-07 51.3 3.8 17 79-95 40-56 (319)
153 2r6a_A DNAB helicase, replicat 94.9 0.1 3.5E-06 48.6 9.2 42 74-117 200-241 (454)
154 1gm5_A RECG; helicase, replica 94.9 0.063 2.2E-06 53.5 8.0 79 278-356 416-499 (780)
155 3pvs_A Replication-associated 94.8 0.02 6.8E-07 53.2 4.1 17 78-94 51-67 (447)
156 3cf0_A Transitional endoplasmi 94.8 0.17 5.8E-06 44.2 9.9 19 76-94 48-66 (301)
157 4a1f_A DNAB helicase, replicat 94.8 0.054 1.8E-06 48.1 6.6 51 74-128 43-93 (338)
158 4b4t_K 26S protease regulatory 94.8 0.25 8.7E-06 45.2 11.2 53 39-94 168-223 (428)
159 2q6t_A DNAB replication FORK h 94.7 0.065 2.2E-06 49.8 7.4 115 76-196 199-324 (444)
160 1w5s_A Origin recognition comp 94.7 0.063 2.2E-06 49.2 7.3 18 78-95 51-70 (412)
161 3vfd_A Spastin; ATPase, microt 94.7 0.086 2.9E-06 48.1 7.9 18 77-94 148-165 (389)
162 2qp9_X Vacuolar protein sortin 94.6 0.16 5.3E-06 45.7 9.4 19 77-95 84-102 (355)
163 1sxj_A Activator 1 95 kDa subu 94.6 0.081 2.8E-06 50.3 7.8 41 182-224 148-190 (516)
164 3hu3_A Transitional endoplasmi 94.4 0.14 4.9E-06 48.0 9.0 42 184-225 299-350 (489)
165 1n0w_A DNA repair protein RAD5 94.4 0.36 1.2E-05 40.4 10.9 26 75-100 22-47 (243)
166 3hjh_A Transcription-repair-co 94.2 0.27 9.4E-06 45.9 10.3 76 267-355 371-446 (483)
167 2zan_A Vacuolar protein sortin 94.2 0.3 1E-05 45.3 10.5 18 77-94 167-184 (444)
168 3bh0_A DNAB-like replicative h 94.2 0.23 7.8E-06 43.7 9.3 53 74-130 65-117 (315)
169 1hqc_A RUVB; extended AAA-ATPa 94.0 0.21 7.4E-06 44.0 8.8 18 77-94 38-55 (324)
170 3oiy_A Reverse gyrase helicase 93.8 0.25 8.4E-06 45.3 9.1 80 277-356 62-148 (414)
171 3io5_A Recombination and repai 93.2 0.12 4E-06 45.2 5.3 42 79-121 30-71 (333)
172 2fna_A Conserved hypothetical 93.1 3.4 0.00011 36.5 15.4 53 166-223 124-179 (357)
173 3jvv_A Twitching mobility prot 91.9 0.26 8.9E-06 44.1 6.2 27 76-103 122-148 (356)
174 3cf2_A TER ATPase, transitiona 91.7 0.46 1.6E-05 47.3 8.1 18 77-94 238-255 (806)
175 3pxi_A Negative regulator of g 91.5 0.45 1.5E-05 47.5 8.1 17 79-95 523-539 (758)
176 4b4t_M 26S protease regulatory 91.5 0.16 5.3E-06 46.7 4.3 55 37-94 175-232 (434)
177 2eyq_A TRCF, transcription-rep 91.1 0.75 2.6E-05 48.1 9.5 78 278-355 651-733 (1151)
178 3lda_A DNA repair protein RAD5 91.1 1.4 4.9E-05 40.0 10.2 40 78-117 179-221 (400)
179 2hjv_A ATP-dependent RNA helic 91.0 1.4 4.8E-05 34.2 9.0 75 108-192 35-113 (163)
180 1t5i_A C_terminal domain of A 90.9 2.4 8.1E-05 33.2 10.3 75 108-192 31-109 (172)
181 2dr3_A UPF0273 protein PH0284; 90.5 0.2 6.9E-06 42.1 3.8 51 76-130 22-72 (247)
182 2zts_A Putative uncharacterize 90.4 0.19 6.6E-06 42.3 3.7 52 77-131 30-81 (251)
183 1t6n_A Probable ATP-dependent 90.2 1.7 5.7E-05 35.6 9.3 74 280-356 83-167 (220)
184 2rb4_A ATP-dependent RNA helic 90.0 1.4 4.8E-05 34.6 8.3 73 108-190 34-110 (175)
185 4ddu_A Reverse gyrase; topoiso 89.9 0.5 1.7E-05 49.2 6.8 79 278-356 120-205 (1104)
186 1fuk_A Eukaryotic initiation f 89.8 2.1 7.3E-05 33.2 9.1 75 108-192 30-108 (165)
187 2qgz_A Helicase loader, putati 89.7 0.3 1E-05 42.8 4.4 19 77-95 152-170 (308)
188 3ber_A Probable ATP-dependent 89.6 1.9 6.6E-05 36.2 9.3 74 278-355 110-194 (249)
189 2oap_1 GSPE-2, type II secreti 89.2 0.27 9.4E-06 46.3 4.0 28 74-102 257-284 (511)
190 4b4t_L 26S protease subunit RP 89.0 0.28 9.5E-06 45.1 3.7 55 37-94 175-232 (437)
191 3eaq_A Heat resistant RNA depe 89.0 2 6.7E-05 35.1 8.6 73 108-190 31-107 (212)
192 4b4t_H 26S protease regulatory 88.8 0.44 1.5E-05 43.9 4.8 53 39-94 205-260 (467)
193 1w36_B RECB, exodeoxyribonucle 88.4 0.79 2.7E-05 48.2 7.1 55 78-132 17-80 (1180)
194 1oyw_A RECQ helicase, ATP-depe 88.4 0.87 3E-05 43.2 6.8 59 279-337 65-123 (523)
195 2i1q_A DNA repair and recombin 88.2 0.64 2.2E-05 41.0 5.5 55 77-131 98-166 (322)
196 2p6n_A ATP-dependent RNA helic 88.1 5.4 0.00018 31.8 10.5 73 109-191 55-131 (191)
197 3b85_A Phosphate starvation-in 88.0 0.53 1.8E-05 38.5 4.5 31 64-94 9-39 (208)
198 4b4t_I 26S protease regulatory 88.0 0.76 2.6E-05 41.9 5.8 54 38-94 177-233 (437)
199 1ls1_A Signal recognition part 88.0 5.8 0.0002 34.2 11.4 21 76-96 97-117 (295)
200 2qmh_A HPR kinase/phosphorylas 87.9 0.28 9.7E-06 39.5 2.7 19 77-95 34-52 (205)
201 2ius_A DNA translocase FTSK; n 87.8 0.59 2E-05 43.9 5.2 28 75-102 165-192 (512)
202 3u4q_B ATP-dependent helicase/ 87.8 0.33 1.1E-05 51.1 3.8 40 80-119 4-43 (1166)
203 2cvh_A DNA repair and recombin 87.8 0.44 1.5E-05 39.1 3.9 36 75-116 18-53 (220)
204 1tue_A Replication protein E1; 87.7 0.36 1.2E-05 39.2 3.2 17 78-94 59-75 (212)
205 2ewv_A Twitching motility prot 87.7 0.43 1.5E-05 43.0 4.1 21 74-94 133-153 (372)
206 1u0j_A DNA replication protein 87.6 0.97 3.3E-05 38.3 5.9 44 49-95 73-122 (267)
207 3a8t_A Adenylate isopentenyltr 87.6 0.3 1E-05 43.1 2.9 19 78-96 41-59 (339)
208 2w0m_A SSO2452; RECA, SSPF, un 87.5 0.49 1.7E-05 39.2 4.1 40 74-116 20-59 (235)
209 3e70_C DPA, signal recognition 87.5 5.2 0.00018 35.1 10.8 52 183-234 212-264 (328)
210 1e9r_A Conjugal transfer prote 87.5 0.47 1.6E-05 43.9 4.3 44 76-122 52-95 (437)
211 2v1x_A ATP-dependent DNA helic 87.2 0.92 3.1E-05 43.7 6.3 59 279-337 84-144 (591)
212 1p9r_A General secretion pathw 87.1 0.97 3.3E-05 41.3 6.1 35 77-114 167-201 (418)
213 1jbk_A CLPB protein; beta barr 87.0 0.45 1.6E-05 37.8 3.5 18 77-94 43-60 (195)
214 3fe2_A Probable ATP-dependent 87.0 1.9 6.5E-05 36.0 7.5 73 279-355 102-184 (242)
215 3vaa_A Shikimate kinase, SK; s 86.9 0.42 1.4E-05 38.7 3.2 20 76-95 24-43 (199)
216 2z43_A DNA repair and recombin 86.8 0.79 2.7E-05 40.4 5.3 55 77-131 107-165 (324)
217 2eyu_A Twitching motility prot 86.8 0.37 1.3E-05 41.0 2.9 21 74-94 22-42 (261)
218 1vec_A ATP-dependent RNA helic 86.8 1.4 4.9E-05 35.5 6.5 73 279-355 71-154 (206)
219 2jgn_A DBX, DDX3, ATP-dependen 86.7 2 6.7E-05 34.2 7.1 90 87-190 29-122 (185)
220 1kgd_A CASK, peripheral plasma 86.3 0.47 1.6E-05 37.7 3.2 19 76-94 4-22 (180)
221 2bjv_A PSP operon transcriptio 86.2 0.51 1.7E-05 40.2 3.6 19 76-94 28-46 (265)
222 2l8b_A Protein TRAI, DNA helic 86.1 0.53 1.8E-05 37.2 3.2 58 64-123 36-95 (189)
223 2qor_A Guanylate kinase; phosp 86.1 0.48 1.7E-05 38.5 3.2 22 73-94 8-29 (204)
224 4ag6_A VIRB4 ATPase, type IV s 85.9 0.79 2.7E-05 41.7 4.9 41 76-119 34-74 (392)
225 2r2a_A Uncharacterized protein 85.7 0.66 2.3E-05 37.6 3.8 21 80-100 8-28 (199)
226 3exa_A TRNA delta(2)-isopenten 85.7 0.45 1.5E-05 41.5 2.9 18 79-96 5-22 (322)
227 3nbx_X ATPase RAVA; AAA+ ATPas 85.7 0.38 1.3E-05 45.2 2.6 26 69-94 33-58 (500)
228 1u94_A RECA protein, recombina 85.7 0.7 2.4E-05 41.3 4.3 39 76-117 62-100 (356)
229 2r44_A Uncharacterized protein 85.5 0.32 1.1E-05 43.0 2.0 23 72-94 41-63 (331)
230 3iij_A Coilin-interacting nucl 85.5 0.56 1.9E-05 37.1 3.3 20 76-95 10-29 (180)
231 2gxq_A Heat resistant RNA depe 85.5 1.7 5.8E-05 35.0 6.3 74 278-355 71-152 (207)
232 1v5w_A DMC1, meiotic recombina 85.4 0.86 2.9E-05 40.5 4.8 41 78-118 123-166 (343)
233 2zr9_A Protein RECA, recombina 85.4 0.64 2.2E-05 41.5 3.9 40 76-118 60-99 (349)
234 1lvg_A Guanylate kinase, GMP k 85.4 0.4 1.4E-05 38.8 2.4 19 76-94 3-21 (198)
235 3foz_A TRNA delta(2)-isopenten 85.3 0.48 1.6E-05 41.2 2.9 18 79-96 12-29 (316)
236 3trf_A Shikimate kinase, SK; a 85.3 0.54 1.9E-05 37.4 3.1 19 77-95 5-23 (185)
237 3tau_A Guanylate kinase, GMP k 85.2 0.57 1.9E-05 38.3 3.2 19 76-94 7-25 (208)
238 3lw7_A Adenylate kinase relate 85.1 0.39 1.3E-05 37.6 2.2 15 80-94 4-18 (179)
239 1zp6_A Hypothetical protein AT 85.1 0.32 1.1E-05 39.0 1.7 20 75-94 7-26 (191)
240 3hws_A ATP-dependent CLP prote 85.0 1 3.4E-05 40.4 5.1 19 76-94 50-68 (363)
241 1qhx_A CPT, protein (chloramph 84.8 0.45 1.5E-05 37.5 2.4 18 77-94 3-20 (178)
242 2gza_A Type IV secretion syste 84.8 0.53 1.8E-05 42.3 3.1 21 74-94 172-192 (361)
243 2x8a_A Nuclear valosin-contain 84.8 0.23 7.9E-06 42.7 0.7 53 39-94 6-61 (274)
244 2j41_A Guanylate kinase; GMP, 84.5 0.49 1.7E-05 38.4 2.5 20 75-94 4-23 (207)
245 3b9p_A CG5977-PA, isoform A; A 84.5 0.47 1.6E-05 41.2 2.6 18 77-94 54-71 (297)
246 2iut_A DNA translocase FTSK; n 84.4 1.1 3.7E-05 42.6 5.1 28 77-104 214-241 (574)
247 2ze6_A Isopentenyl transferase 84.3 0.56 1.9E-05 39.7 2.9 16 80-95 4-19 (253)
248 2l82_A Designed protein OR32; 84.2 5.4 0.00018 27.8 7.2 51 282-332 5-55 (162)
249 3bgw_A DNAB-like replicative h 84.1 1.3 4.3E-05 41.0 5.4 52 74-129 194-245 (444)
250 2px0_A Flagellar biosynthesis 84.1 0.76 2.6E-05 39.9 3.7 20 77-96 105-124 (296)
251 2r8r_A Sensor protein; KDPD, P 84.0 1 3.5E-05 37.2 4.2 24 79-102 8-31 (228)
252 3hr8_A Protein RECA; alpha and 83.9 0.64 2.2E-05 41.5 3.2 41 77-120 61-101 (356)
253 1ofh_A ATP-dependent HSL prote 83.9 1.6 5.4E-05 37.9 5.8 18 77-94 50-67 (310)
254 2i4i_A ATP-dependent RNA helic 83.8 6.3 0.00022 35.7 10.1 72 107-188 275-350 (417)
255 3bor_A Human initiation factor 83.5 1.1 3.6E-05 37.4 4.3 75 278-355 97-181 (237)
256 1y63_A LMAJ004144AAA protein; 83.5 0.58 2E-05 37.3 2.5 19 76-94 9-27 (184)
257 1xp8_A RECA protein, recombina 83.3 0.89 3.1E-05 40.8 3.9 41 76-119 73-113 (366)
258 1lv7_A FTSH; alpha/beta domain 83.3 0.55 1.9E-05 39.7 2.4 18 77-94 45-62 (257)
259 3i5x_A ATP-dependent RNA helic 83.2 12 0.0004 35.6 12.0 98 88-192 319-420 (563)
260 1ojl_A Transcriptional regulat 83.2 0.77 2.6E-05 40.1 3.4 19 76-94 24-42 (304)
261 3tr0_A Guanylate kinase, GMP k 83.2 0.77 2.6E-05 37.1 3.2 19 76-94 6-24 (205)
262 4gp7_A Metallophosphoesterase; 83.1 0.49 1.7E-05 37.2 1.9 20 75-94 7-26 (171)
263 1ly1_A Polynucleotide kinase; 83.0 0.54 1.9E-05 37.1 2.2 16 79-94 4-19 (181)
264 1kag_A SKI, shikimate kinase I 83.0 0.65 2.2E-05 36.4 2.6 18 77-94 4-21 (173)
265 1xwi_A SKD1 protein; VPS4B, AA 82.9 0.86 2.9E-05 40.1 3.6 18 77-94 45-62 (322)
266 3kb2_A SPBC2 prophage-derived 82.9 0.58 2E-05 36.6 2.3 16 79-94 3-18 (173)
267 2oxc_A Probable ATP-dependent 82.8 2 6.9E-05 35.5 5.7 73 278-355 91-174 (230)
268 3ney_A 55 kDa erythrocyte memb 82.8 0.87 3E-05 36.8 3.2 19 76-94 18-36 (197)
269 3crm_A TRNA delta(2)-isopenten 82.6 0.71 2.4E-05 40.5 2.9 18 79-96 7-24 (323)
270 2pt7_A CAG-ALFA; ATPase, prote 82.5 0.5 1.7E-05 41.8 1.9 20 74-93 168-187 (330)
271 1kht_A Adenylate kinase; phosp 82.5 0.64 2.2E-05 37.1 2.4 18 77-94 3-20 (192)
272 3umf_A Adenylate kinase; rossm 82.2 0.78 2.7E-05 37.7 2.8 20 76-95 28-47 (217)
273 2ehv_A Hypothetical protein PH 82.1 1.2 4.1E-05 37.3 4.1 22 74-95 27-48 (251)
274 3t15_A Ribulose bisphosphate c 82.1 0.79 2.7E-05 39.7 3.0 17 78-94 37-53 (293)
275 1wrb_A DJVLGB; RNA helicase, D 82.1 7.1 0.00024 32.6 9.0 73 279-355 100-182 (253)
276 3i32_A Heat resistant RNA depe 82.0 4.4 0.00015 35.1 7.7 75 108-192 28-106 (300)
277 1sky_E F1-ATPase, F1-ATP synth 81.9 13 0.00044 34.4 11.0 28 71-98 145-172 (473)
278 1z6g_A Guanylate kinase; struc 81.8 0.76 2.6E-05 37.8 2.7 20 75-94 21-40 (218)
279 3iuy_A Probable ATP-dependent 81.8 3.5 0.00012 33.8 6.8 74 278-355 93-175 (228)
280 4akg_A Glutathione S-transfera 81.5 2.3 7.9E-05 48.3 6.9 47 48-95 891-941 (2695)
281 3d3q_A TRNA delta(2)-isopenten 81.4 0.84 2.9E-05 40.3 2.9 18 79-96 9-26 (340)
282 3cm0_A Adenylate kinase; ATP-b 81.3 0.73 2.5E-05 36.6 2.3 18 77-94 4-21 (186)
283 1nlf_A Regulatory protein REPA 81.2 2.1 7.2E-05 36.6 5.4 27 73-99 26-52 (279)
284 3nwn_A Kinesin-like protein KI 81.2 0.83 2.8E-05 40.7 2.8 25 70-94 96-122 (359)
285 3sqw_A ATP-dependent RNA helic 81.1 16 0.00053 35.0 12.0 89 97-192 277-369 (579)
286 1knq_A Gluconate kinase; ALFA/ 81.1 0.7 2.4E-05 36.3 2.1 18 77-94 8-25 (175)
287 3uk6_A RUVB-like 2; hexameric 80.9 0.8 2.7E-05 41.1 2.7 19 77-95 70-88 (368)
288 4eun_A Thermoresistant glucoki 80.9 0.82 2.8E-05 36.9 2.5 19 76-94 28-46 (200)
289 1xti_A Probable ATP-dependent 80.8 4.1 0.00014 36.5 7.5 74 279-355 76-160 (391)
290 3a00_A Guanylate kinase, GMP k 80.8 0.86 2.9E-05 36.3 2.6 17 78-94 2-18 (186)
291 1bg2_A Kinesin; motor protein, 80.7 1 3.5E-05 39.6 3.2 24 71-94 70-95 (325)
292 2v54_A DTMP kinase, thymidylat 80.7 0.81 2.8E-05 37.0 2.4 19 76-94 3-21 (204)
293 2c9o_A RUVB-like 1; hexameric 80.4 1.1 3.6E-05 41.8 3.4 19 77-95 63-81 (456)
294 2rhm_A Putative kinase; P-loop 80.1 0.67 2.3E-05 37.0 1.7 18 77-94 5-22 (193)
295 3vkg_A Dynein heavy chain, cyt 80.0 3.2 0.00011 47.8 7.4 68 48-117 874-946 (3245)
296 3dc4_A Kinesin-like protein NO 79.7 0.97 3.3E-05 40.0 2.7 23 72-94 88-112 (344)
297 1f9v_A Kinesin-like protein KA 79.6 1.2 4.2E-05 39.5 3.4 25 70-94 76-102 (347)
298 3t0q_A AGR253WP; kinesin, alph 79.6 1.3 4.4E-05 39.4 3.5 25 70-94 77-103 (349)
299 1goj_A Kinesin, kinesin heavy 79.5 1.2 4E-05 39.7 3.2 23 72-94 74-98 (355)
300 1s96_A Guanylate kinase, GMP k 79.3 0.99 3.4E-05 37.2 2.5 21 74-94 13-33 (219)
301 3cmw_A Protein RECA, recombina 79.3 1.1 3.6E-05 48.5 3.3 50 77-132 1431-1480(1706)
302 1znw_A Guanylate kinase, GMP k 79.3 1 3.4E-05 36.7 2.6 22 73-94 16-37 (207)
303 4a14_A Kinesin, kinesin-like p 79.2 1.2 4.1E-05 39.5 3.2 24 71-94 76-101 (344)
304 3eph_A TRNA isopentenyltransfe 79.2 0.95 3.2E-05 40.9 2.5 17 80-96 5-21 (409)
305 3lre_A Kinesin-like protein KI 79.2 1.2 4.1E-05 39.7 3.2 23 72-94 99-123 (355)
306 2vvg_A Kinesin-2; motor protei 79.2 1.2 4.1E-05 39.5 3.2 23 72-94 83-107 (350)
307 2h58_A Kinesin-like protein KI 79.0 1.2 4.3E-05 39.1 3.2 25 70-94 72-98 (330)
308 3sr0_A Adenylate kinase; phosp 79.0 1.2 4.1E-05 36.3 2.9 16 80-95 3-18 (206)
309 1ixz_A ATP-dependent metallopr 79.0 0.96 3.3E-05 38.1 2.5 17 78-94 50-66 (254)
310 2y65_A Kinesin, kinesin heavy 78.9 1.2 4.2E-05 39.7 3.2 23 72-94 78-102 (365)
311 3bfn_A Kinesin-like protein KI 78.8 1.2 4.3E-05 40.0 3.2 22 73-94 93-116 (388)
312 1um8_A ATP-dependent CLP prote 78.7 1.3 4.4E-05 40.0 3.3 18 77-94 72-89 (376)
313 1tev_A UMP-CMP kinase; ploop, 78.7 0.89 3E-05 36.3 2.1 17 78-94 4-20 (196)
314 2r62_A Cell division protease 78.7 0.7 2.4E-05 39.3 1.5 19 77-95 44-62 (268)
315 3t61_A Gluconokinase; PSI-biol 78.6 0.95 3.2E-05 36.6 2.2 17 78-94 19-35 (202)
316 2c95_A Adenylate kinase 1; tra 78.6 1.2 4.2E-05 35.5 2.9 19 76-94 8-26 (196)
317 3ly5_A ATP-dependent RNA helic 78.5 15 0.0005 30.9 9.8 74 278-355 125-209 (262)
318 1cr0_A DNA primase/helicase; R 78.4 1.8 6.1E-05 37.5 4.0 41 74-116 32-72 (296)
319 3b6u_A Kinesin-like protein KI 78.4 1.1 3.9E-05 40.0 2.8 23 72-94 95-119 (372)
320 4etp_A Kinesin-like protein KA 78.4 1.2 4.3E-05 40.4 3.1 25 70-94 132-158 (403)
321 1c9k_A COBU, adenosylcobinamid 78.3 1.1 3.9E-05 35.4 2.5 44 80-130 2-45 (180)
322 3d8b_A Fidgetin-like protein 1 78.3 1.3 4.4E-05 39.6 3.2 19 77-95 117-135 (357)
323 2zfi_A Kinesin-like protein KI 78.3 1.3 4.5E-05 39.6 3.2 24 71-94 82-107 (366)
324 4fcw_A Chaperone protein CLPB; 78.3 1.9 6.5E-05 37.4 4.2 17 78-94 48-64 (311)
325 2qt1_A Nicotinamide riboside k 78.2 0.96 3.3E-05 36.7 2.1 24 71-94 15-38 (207)
326 3gbj_A KIF13B protein; kinesin 78.1 1.2 4E-05 39.7 2.8 25 70-94 84-110 (354)
327 3pey_A ATP-dependent RNA helic 78.1 36 0.0012 30.1 14.0 76 108-193 243-322 (395)
328 1v8k_A Kinesin-like protein KI 78.1 1.2 4.1E-05 40.4 2.9 24 71-94 147-172 (410)
329 3fb4_A Adenylate kinase; psych 78.0 1 3.4E-05 36.9 2.2 15 80-94 3-17 (216)
330 1q57_A DNA primase/helicase; d 78.0 1.5 5.1E-05 41.4 3.6 52 74-128 239-290 (503)
331 1t5c_A CENP-E protein, centrom 78.0 1.2 4.1E-05 39.5 2.8 24 71-94 70-95 (349)
332 1gvn_B Zeta; postsegregational 77.8 0.99 3.4E-05 39.0 2.2 17 78-94 34-50 (287)
333 2heh_A KIF2C protein; kinesin, 77.7 1.4 4.7E-05 39.7 3.1 24 71-94 127-152 (387)
334 2nr8_A Kinesin-like protein KI 77.7 1.2 4.2E-05 39.6 2.8 25 70-94 95-121 (358)
335 1vma_A Cell division protein F 77.6 2 7E-05 37.4 4.1 19 78-96 105-123 (306)
336 1ex7_A Guanylate kinase; subst 77.6 1.2 4.2E-05 35.5 2.5 17 78-94 2-18 (186)
337 1zuh_A Shikimate kinase; alpha 77.6 1.5 5E-05 34.2 3.0 18 78-95 8-25 (168)
338 1g8p_A Magnesium-chelatase 38 77.5 0.79 2.7E-05 40.7 1.5 18 77-94 45-62 (350)
339 1pzn_A RAD51, DNA repair and r 77.4 2 6.7E-05 38.3 4.0 39 78-116 132-173 (349)
340 1x88_A Kinesin-like protein KI 77.3 1.2 4.2E-05 39.7 2.7 25 70-94 80-106 (359)
341 3uie_A Adenylyl-sulfate kinase 77.2 1.4 4.9E-05 35.5 2.9 19 76-94 24-42 (200)
342 1qde_A EIF4A, translation init 77.2 2.3 7.7E-05 34.9 4.2 73 278-355 81-163 (224)
343 3dl0_A Adenylate kinase; phosp 77.1 1.1 3.8E-05 36.6 2.2 15 80-94 3-17 (216)
344 1nks_A Adenylate kinase; therm 77.1 0.97 3.3E-05 36.0 1.8 15 80-94 4-18 (194)
345 2bdt_A BH3686; alpha-beta prot 77.0 1.1 3.9E-05 35.6 2.2 16 79-94 4-19 (189)
346 3u06_A Protein claret segregat 77.0 1.4 4.7E-05 40.1 2.9 25 70-94 130-156 (412)
347 2vhj_A Ntpase P4, P4; non- hyd 77.0 1.3 4.4E-05 38.8 2.6 24 76-99 122-145 (331)
348 3c8u_A Fructokinase; YP_612366 77.0 1.1 3.8E-05 36.4 2.2 19 76-94 21-39 (208)
349 1e6c_A Shikimate kinase; phosp 76.9 1.2 4E-05 34.9 2.2 16 79-94 4-19 (173)
350 1aky_A Adenylate kinase; ATP:A 76.9 1.6 5.6E-05 35.7 3.2 18 77-94 4-21 (220)
351 3nwj_A ATSK2; P loop, shikimat 76.9 1.8 6.2E-05 36.4 3.5 19 76-94 47-65 (250)
352 1zak_A Adenylate kinase; ATP:A 76.8 1.5 5E-05 36.1 2.9 19 77-95 5-23 (222)
353 2iyv_A Shikimate kinase, SK; t 76.6 1.3 4.6E-05 35.0 2.5 16 79-94 4-19 (184)
354 2cdn_A Adenylate kinase; phosp 76.6 1.3 4.6E-05 35.6 2.6 17 78-94 21-37 (201)
355 1m7g_A Adenylylsulfate kinase; 76.6 1.4 4.9E-05 35.9 2.7 21 74-94 22-42 (211)
356 1via_A Shikimate kinase; struc 76.4 1.7 5.8E-05 34.1 3.1 16 79-94 6-21 (175)
357 2plr_A DTMP kinase, probable t 76.4 1.2 4E-05 36.2 2.2 18 77-94 4-21 (213)
358 3cob_A Kinesin heavy chain-lik 76.4 1.2 4.2E-05 39.8 2.4 25 70-94 71-97 (369)
359 3ice_A Transcription terminati 76.4 2.6 8.8E-05 37.9 4.4 22 73-94 170-191 (422)
360 2v9p_A Replication protein E1; 76.3 1.8 6E-05 37.7 3.3 21 74-94 123-143 (305)
361 2wbe_C Bipolar kinesin KRP-130 76.3 1.4 4.7E-05 39.6 2.7 23 72-94 94-118 (373)
362 2rep_A Kinesin-like protein KI 76.3 1.6 5.4E-05 39.2 3.1 25 70-94 107-133 (376)
363 3b9q_A Chloroplast SRP recepto 76.3 2 6.7E-05 37.4 3.7 18 77-94 100-117 (302)
364 2bwj_A Adenylate kinase 5; pho 76.1 1 3.6E-05 36.1 1.8 18 77-94 12-29 (199)
365 2vli_A Antibiotic resistance p 76.0 1.1 3.8E-05 35.4 1.9 18 77-94 5-22 (183)
366 1zu4_A FTSY; GTPase, signal re 75.9 2.4 8.3E-05 37.1 4.2 19 78-96 106-124 (320)
367 1zd8_A GTP:AMP phosphotransfer 75.9 1.5 5.1E-05 36.2 2.7 18 77-94 7-24 (227)
368 3cf2_A TER ATPase, transitiona 75.8 2.7 9.1E-05 41.9 4.8 55 39-94 473-528 (806)
369 2owm_A Nckin3-434, related to 75.7 1.7 5.8E-05 40.0 3.2 23 72-94 130-154 (443)
370 2pez_A Bifunctional 3'-phospho 75.7 1.3 4.4E-05 35.0 2.2 18 77-94 5-22 (179)
371 3fmo_B ATP-dependent RNA helic 75.6 2.5 8.4E-05 36.7 4.1 70 280-356 163-244 (300)
372 3tlx_A Adenylate kinase 2; str 75.6 1.8 6E-05 36.3 3.1 18 77-94 29-46 (243)
373 2j0s_A ATP-dependent RNA helic 75.5 15 0.00052 33.0 9.7 73 109-191 277-353 (410)
374 3lnc_A Guanylate kinase, GMP k 75.5 1.2 3.9E-05 37.0 1.9 21 74-94 24-44 (231)
375 2pt5_A Shikimate kinase, SK; a 75.3 1.4 4.7E-05 34.3 2.2 16 79-94 2-17 (168)
376 1wp9_A ATP-dependent RNA helic 75.3 12 0.00042 34.3 9.2 73 278-355 51-133 (494)
377 1rj9_A FTSY, signal recognitio 75.3 2.7 9.1E-05 36.6 4.2 18 77-94 102-119 (304)
378 1f2t_A RAD50 ABC-ATPase; DNA d 75.1 1.4 4.9E-05 33.6 2.2 16 79-94 25-40 (149)
379 4a74_A DNA repair and recombin 75.0 1.3 4.6E-05 36.4 2.2 22 75-96 23-44 (231)
380 1ukz_A Uridylate kinase; trans 74.9 1.4 4.7E-05 35.6 2.2 16 79-94 17-32 (203)
381 3cmu_A Protein RECA, recombina 74.9 2.4 8.2E-05 46.6 4.5 41 76-119 1426-1466(2050)
382 1in4_A RUVB, holliday junction 74.8 1.8 6.2E-05 38.2 3.1 17 78-94 52-68 (334)
383 2v3c_C SRP54, signal recogniti 74.7 2.7 9.2E-05 38.6 4.3 35 78-115 100-134 (432)
384 2yvu_A Probable adenylyl-sulfa 74.5 1.8 6.3E-05 34.3 2.8 19 77-95 13-31 (186)
385 3bs4_A Uncharacterized protein 74.4 4.1 0.00014 34.4 5.0 52 77-132 21-72 (260)
386 1ak2_A Adenylate kinase isoenz 74.4 2.1 7E-05 35.5 3.2 19 77-95 16-34 (233)
387 1s2m_A Putative ATP-dependent 74.4 13 0.00046 33.2 9.0 73 108-190 258-334 (400)
388 1gku_B Reverse gyrase, TOP-RG; 74.3 4.7 0.00016 41.8 6.4 76 278-355 98-183 (1054)
389 2wwf_A Thymidilate kinase, put 74.3 1.4 4.8E-05 35.7 2.1 20 76-95 9-28 (212)
390 2d7d_A Uvrabc system protein B 74.3 33 0.0011 33.4 12.1 77 108-194 445-525 (661)
391 3f9v_A Minichromosome maintena 74.3 1.6 5.6E-05 42.0 2.9 16 79-94 329-344 (595)
392 2j37_W Signal recognition part 74.1 16 0.00055 34.2 9.4 35 79-116 103-137 (504)
393 2pl3_A Probable ATP-dependent 74.0 4.8 0.00016 33.2 5.4 73 278-355 96-179 (236)
394 1qf9_A UMP/CMP kinase, protein 73.9 1.7 5.8E-05 34.5 2.5 16 79-94 8-23 (194)
395 2pbr_A DTMP kinase, thymidylat 73.9 1.5 5.2E-05 34.9 2.2 15 80-94 3-17 (195)
396 3a4m_A L-seryl-tRNA(SEC) kinas 73.8 1.5 5.1E-05 37.2 2.2 17 78-94 5-21 (260)
397 2jaq_A Deoxyguanosine kinase; 73.8 2 6.7E-05 34.6 2.9 15 80-94 3-17 (205)
398 1jjv_A Dephospho-COA kinase; P 73.6 1.6 5.3E-05 35.4 2.2 15 80-94 5-19 (206)
399 2z0h_A DTMP kinase, thymidylat 73.5 1.6 5.4E-05 34.9 2.2 15 80-94 3-17 (197)
400 1nn5_A Similar to deoxythymidy 73.5 1.5 5.3E-05 35.6 2.2 19 76-94 8-26 (215)
401 1cke_A CK, MSSA, protein (cyti 73.5 1.5 5.2E-05 36.0 2.2 17 78-94 6-22 (227)
402 3tif_A Uncharacterized ABC tra 73.4 1.7 5.7E-05 36.3 2.4 19 75-93 29-47 (235)
403 3pxg_A Negative regulator of g 73.4 2.7 9.2E-05 39.1 4.0 19 77-95 201-219 (468)
404 2xb4_A Adenylate kinase; ATP-b 73.3 1.6 5.4E-05 36.0 2.2 15 80-94 3-17 (223)
405 2db3_A ATP-dependent RNA helic 73.3 18 0.00062 33.0 9.6 70 110-189 302-375 (434)
406 2p5t_B PEZT; postsegregational 72.8 1.3 4.5E-05 37.3 1.6 18 77-94 32-49 (253)
407 1np6_A Molybdopterin-guanine d 72.8 4.3 0.00015 31.9 4.5 16 79-94 8-23 (174)
408 3asz_A Uridine kinase; cytidin 72.5 1.5 5E-05 35.7 1.8 18 77-94 6-23 (211)
409 3nh6_A ATP-binding cassette SU 72.3 2.2 7.4E-05 37.2 2.9 20 75-94 78-97 (306)
410 1ye8_A Protein THEP1, hypothet 72.3 1.8 6.1E-05 34.3 2.2 16 79-94 2-17 (178)
411 1iy2_A ATP-dependent metallopr 72.3 2.1 7.3E-05 36.6 2.9 53 39-94 36-90 (278)
412 1nij_A Hypothetical protein YJ 72.2 2.4 8.1E-05 37.2 3.2 15 80-94 7-21 (318)
413 2ce7_A Cell division protein F 72.2 1.8 6.1E-05 40.3 2.5 18 77-94 49-66 (476)
414 1e4v_A Adenylate kinase; trans 72.0 2 6.8E-05 35.0 2.5 15 80-94 3-17 (214)
415 2cbz_A Multidrug resistance-as 72.0 1.9 6.4E-05 36.0 2.4 20 74-93 28-47 (237)
416 2bbw_A Adenylate kinase 4, AK4 72.0 2 6.8E-05 36.0 2.5 18 77-94 27-44 (246)
417 1mv5_A LMRA, multidrug resista 71.9 2.8 9.7E-05 35.0 3.5 19 75-93 26-44 (243)
418 3tqf_A HPR(Ser) kinase; transf 71.9 2.1 7.2E-05 33.6 2.4 23 76-98 15-37 (181)
419 3be4_A Adenylate kinase; malar 71.7 2.3 7.9E-05 34.8 2.8 17 78-94 6-22 (217)
420 1g41_A Heat shock protein HSLU 71.7 2.5 8.6E-05 38.8 3.3 18 77-94 50-67 (444)
421 1htw_A HI0065; nucleotide-bind 71.3 1.9 6.6E-05 33.3 2.1 19 75-93 31-49 (158)
422 2if2_A Dephospho-COA kinase; a 71.1 1.7 5.7E-05 35.1 1.8 16 79-94 3-18 (204)
423 2i3b_A HCR-ntpase, human cance 70.8 3 0.0001 33.3 3.2 41 180-223 103-145 (189)
424 1sgw_A Putative ABC transporte 70.7 2.1 7.3E-05 35.0 2.4 20 74-93 32-51 (214)
425 3fht_A ATP-dependent RNA helic 70.5 58 0.002 29.0 13.3 74 108-191 266-343 (412)
426 3qf7_A RAD50; ABC-ATPase, ATPa 70.5 1.9 6.5E-05 38.7 2.2 16 79-94 25-40 (365)
427 1xjc_A MOBB protein homolog; s 70.4 4.6 0.00016 31.5 4.1 16 79-94 6-21 (169)
428 3tqc_A Pantothenate kinase; bi 70.3 4.2 0.00014 35.6 4.3 15 80-94 95-109 (321)
429 4g1u_C Hemin import ATP-bindin 70.3 3.8 0.00013 34.8 3.9 19 75-93 35-53 (266)
430 2xxa_A Signal recognition part 69.8 3.9 0.00013 37.5 4.2 35 79-115 102-136 (433)
431 3gfo_A Cobalt import ATP-bindi 69.8 2.2 7.4E-05 36.5 2.3 19 75-93 32-50 (275)
432 2v6i_A RNA helicase; membrane, 69.7 8.3 0.00028 35.4 6.4 67 109-186 172-238 (431)
433 3l0o_A Transcription terminati 69.6 4 0.00014 36.7 4.0 29 73-102 171-199 (427)
434 2pze_A Cystic fibrosis transme 69.4 2.2 7.7E-05 35.3 2.3 20 74-93 31-50 (229)
435 3m6a_A ATP-dependent protease 69.4 2.3 7.8E-05 40.5 2.6 19 76-94 107-125 (543)
436 2ghi_A Transport protein; mult 69.2 2.3 7.9E-05 36.0 2.4 20 74-93 43-62 (260)
437 2ff7_A Alpha-hemolysin translo 69.2 2.3 7.8E-05 35.7 2.3 19 75-93 33-51 (247)
438 2grj_A Dephospho-COA kinase; T 68.8 2.4 8.1E-05 34.0 2.2 15 80-94 15-29 (192)
439 1c4o_A DNA nucleotide excision 68.6 45 0.0016 32.5 11.6 77 108-194 439-519 (664)
440 1j8m_F SRP54, signal recogniti 68.5 4.2 0.00014 35.2 3.9 20 78-97 99-118 (297)
441 3eme_A Rhodanese-like domain p 68.5 3.9 0.00013 28.6 3.1 36 278-313 55-90 (103)
442 2og2_A Putative signal recogni 68.3 4.4 0.00015 36.1 4.0 18 77-94 157-174 (359)
443 3kta_A Chromosome segregation 68.2 2.9 9.9E-05 32.9 2.7 16 79-94 28-43 (182)
444 3gk5_A Uncharacterized rhodane 68.2 3.9 0.00013 29.0 3.1 37 278-314 54-90 (108)
445 3cmw_A Protein RECA, recombina 68.2 4 0.00014 44.2 4.3 42 75-119 32-73 (1706)
446 1vht_A Dephospho-COA kinase; s 68.1 2.4 8.3E-05 34.6 2.2 16 79-94 6-21 (218)
447 1hv8_A Putative ATP-dependent 67.9 22 0.00075 31.2 8.8 73 278-355 73-155 (367)
448 3cmu_A Protein RECA, recombina 67.9 4.2 0.00014 44.8 4.4 48 74-125 1078-1125(2050)
449 1g6h_A High-affinity branched- 67.8 2.5 8.6E-05 35.7 2.3 20 74-93 30-49 (257)
450 3k1j_A LON protease, ATP-depen 67.8 3.8 0.00013 39.6 3.8 22 73-94 56-77 (604)
451 3iwh_A Rhodanese-like domain p 67.7 4.2 0.00014 28.6 3.1 36 278-313 55-90 (103)
452 3foj_A Uncharacterized protein 67.6 4.1 0.00014 28.4 3.1 36 278-313 55-90 (100)
453 1yks_A Genome polyprotein [con 67.5 8.2 0.00028 35.5 5.9 69 108-187 177-245 (440)
454 2pcj_A ABC transporter, lipopr 67.4 2.3 7.8E-05 35.1 1.9 19 75-93 28-46 (224)
455 1ji0_A ABC transporter; ATP bi 67.3 2.6 9E-05 35.2 2.3 19 75-93 30-48 (240)
456 4e22_A Cytidylate kinase; P-lo 67.3 3.6 0.00012 34.6 3.2 19 76-94 26-44 (252)
457 1uf9_A TT1252 protein; P-loop, 67.3 2.9 9.8E-05 33.5 2.5 16 79-94 10-25 (203)
458 1b0u_A Histidine permease; ABC 66.7 2.8 9.5E-05 35.6 2.3 19 75-93 30-48 (262)
459 1ltq_A Polynucleotide kinase; 66.7 2.6 8.8E-05 36.5 2.2 16 79-94 4-19 (301)
460 1vpl_A ABC transporter, ATP-bi 66.4 2.9 9.8E-05 35.3 2.3 19 75-93 39-57 (256)
461 4eaq_A DTMP kinase, thymidylat 66.4 3 0.0001 34.5 2.5 19 76-94 25-43 (229)
462 2zu0_C Probable ATP-dependent 66.4 2.8 9.7E-05 35.6 2.3 21 74-94 43-63 (267)
463 2qi9_C Vitamin B12 import ATP- 66.3 2.8 9.6E-05 35.2 2.3 20 74-93 23-42 (249)
464 1ry6_A Internal kinesin; kines 66.2 3.3 0.00011 36.9 2.8 18 77-94 83-102 (360)
465 1svm_A Large T antigen; AAA+ f 66.1 3.8 0.00013 36.8 3.2 20 75-94 167-186 (377)
466 2yz2_A Putative ABC transporte 66.0 2.9 0.0001 35.5 2.4 19 75-93 31-49 (266)
467 2ixe_A Antigen peptide transpo 65.9 3 0.0001 35.6 2.4 20 74-93 42-61 (271)
468 3auy_A DNA double-strand break 65.9 2.3 8E-05 38.2 1.8 17 78-94 26-42 (371)
469 2nq2_C Hypothetical ABC transp 65.9 2.9 0.0001 35.2 2.3 19 75-93 29-47 (253)
470 2yhs_A FTSY, cell division pro 65.9 4.3 0.00015 37.8 3.6 34 78-114 294-327 (503)
471 2f1r_A Molybdopterin-guanine d 65.9 2 7E-05 33.7 1.2 16 79-94 4-19 (171)
472 2d2e_A SUFC protein; ABC-ATPas 65.7 2.9 0.0001 35.1 2.3 20 75-94 27-46 (250)
473 2olj_A Amino acid ABC transpor 65.7 3 0.0001 35.4 2.3 19 75-93 48-66 (263)
474 2dhr_A FTSH; AAA+ protein, hex 65.6 3 0.0001 39.1 2.5 17 78-94 65-81 (499)
475 2yjt_D ATP-dependent RNA helic 69.1 1.3 4.4E-05 34.7 0.0 74 108-191 30-107 (170)
476 2jeo_A Uridine-cytidine kinase 65.4 2.8 9.6E-05 35.0 2.1 18 77-94 25-42 (245)
477 2ffh_A Protein (FFH); SRP54, s 65.2 5.7 0.0002 36.3 4.2 35 78-115 99-133 (425)
478 1ypw_A Transitional endoplasmi 65.1 2.7 9.1E-05 42.2 2.2 19 76-94 237-255 (806)
479 2ihy_A ABC transporter, ATP-bi 65.0 3 0.0001 35.7 2.3 20 74-93 44-63 (279)
480 4tmk_A Protein (thymidylate ki 64.8 10 0.00036 30.8 5.4 27 76-103 2-28 (213)
481 1uj2_A Uridine-cytidine kinase 64.6 3.1 0.0001 35.0 2.2 17 79-95 24-40 (252)
482 4anj_A Unconventional myosin-V 64.5 6.8 0.00023 40.3 5.0 58 39-96 97-163 (1052)
483 1ko7_A HPR kinase/phosphatase; 64.2 12 0.00042 32.5 5.9 51 47-97 92-164 (314)
484 1odf_A YGR205W, hypothetical 3 64.2 3.1 0.00011 35.9 2.2 16 79-94 33-48 (290)
485 4akg_A Glutathione S-transfera 64.0 6.7 0.00023 44.7 5.2 20 75-94 1265-1284(2695)
486 1q0u_A Bstdead; DEAD protein, 64.0 3.4 0.00012 33.7 2.3 73 279-355 72-158 (219)
487 3pxi_A Negative regulator of g 63.8 4 0.00014 40.7 3.2 19 77-95 201-219 (758)
488 2wv9_A Flavivirin protease NS2 63.4 13 0.00044 36.4 6.6 69 108-187 410-478 (673)
489 1gtv_A TMK, thymidylate kinase 63.2 2.2 7.4E-05 34.7 1.0 15 80-94 3-17 (214)
490 3aez_A Pantothenate kinase; tr 63.1 3.2 0.00011 36.2 2.1 19 76-94 89-107 (312)
491 2oca_A DAR protein, ATP-depend 63.0 84 0.0029 29.1 12.1 94 110-213 349-446 (510)
492 4a2q_A RIG-I, retinoic acid in 62.9 14 0.00046 37.1 6.9 73 279-355 296-379 (797)
493 3v9p_A DTMP kinase, thymidylat 62.9 3.4 0.00012 34.2 2.1 20 75-94 23-42 (227)
494 3qks_A DNA double-strand break 62.7 4.9 0.00017 32.4 3.0 16 79-94 25-40 (203)
495 2f6r_A COA synthase, bifunctio 62.6 3 0.0001 35.7 1.8 17 79-95 77-93 (281)
496 4a2p_A RIG-I, retinoic acid in 62.6 11 0.00039 35.5 6.0 73 279-355 55-138 (556)
497 2vp4_A Deoxynucleoside kinase; 62.6 3.5 0.00012 34.0 2.2 19 76-94 19-37 (230)
498 3ake_A Cytidylate kinase; CMP 62.4 3.6 0.00012 33.1 2.2 16 79-94 4-19 (208)
499 1tf7_A KAIC; homohexamer, hexa 62.2 6.3 0.00022 37.2 4.1 42 74-118 278-319 (525)
500 1rz3_A Hypothetical protein rb 62.1 4.1 0.00014 32.8 2.4 17 78-94 23-39 (201)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=5.1e-61 Score=452.23 Aligned_cols=374 Identities=32% Similarity=0.525 Sum_probs=338.2
Q ss_pred ccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc-----CceeE
Q 015093 37 EVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES-----LQCQA 111 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~-----~~~~~ 111 (413)
.+..+|+.+++++.+.+.+...||..|+++|.++++.+++|+++++++|||||||++|+++++..+.... .++++
T Consensus 53 ~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~ 132 (434)
T 2db3_A 53 QPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQV 132 (434)
T ss_dssp CCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSE
T ss_pred CCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccE
Confidence 3467899999999999999999999999999999999999999999999999999999999998875432 35689
Q ss_pred EEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccc
Q 015093 112 LVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEA 191 (413)
Q Consensus 112 lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~ 191 (413)
||++|+++|+.|+++++++++...++++..++|+.....+......+++|+|+||++|.+.+.+....+.+++++|+|||
T Consensus 133 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEa 212 (434)
T 2db3_A 133 VIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEA 212 (434)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETH
T ss_pred EEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccH
Confidence 99999999999999999999988888999999999887777777778999999999999999988888889999999999
Q ss_pred hhhhccCcHHHHHHHHhhC--CCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHH
Q 015093 192 DEMLSRGFKDQIYDIFQHL--PGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDT 269 (413)
Q Consensus 192 h~~~~~~~~~~~~~~~~~~--~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (413)
|++.+.++...+..++..+ +...+++++|||+++....+...++.++..+...........+.+....... ..+...
T Consensus 213 h~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~ 291 (434)
T 2db3_A 213 DRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNK-YAKRSK 291 (434)
T ss_dssp HHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCG-GGHHHH
T ss_pred hhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCc-HHHHHH
Confidence 9999999999999998875 5678999999999999999999999988888777666666677777666554 557788
Q ss_pred HHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCC
Q 015093 270 LCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 349 (413)
Q Consensus 270 l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~ 349 (413)
+..++..... ++||||++++.++.+++.|.+.++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|+++
T Consensus 292 l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~ 370 (434)
T 2db3_A 292 LIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIK 370 (434)
T ss_dssp HHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCC
T ss_pred HHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCC
Confidence 8888887654 499999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHhhhcccCCCCCcceEEEEec-cccHHHHHHHHHHhccccccCCcchhcc
Q 015093 350 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT-RDDDRMLADIQRFYNVVIEELPANVADL 412 (413)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+||+++.|.+..+|+||+||+||.|+.|.+++|++ ..+......+.+.+....+.+|.+|.++
T Consensus 371 ~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 371 HVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred EEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 99999999999999999999999999999999999 4577888999999999999999998764
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=5.4e-61 Score=451.16 Aligned_cols=377 Identities=67% Similarity=1.065 Sum_probs=350.0
Q ss_pred ccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 37 EVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
+...+|+.+++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....+.+++|++|
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 113 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 113 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECS
T ss_pred cCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcC
Confidence 34578999999999999999999999999999999999999999999999999999999999998865555679999999
Q ss_pred cHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc
Q 015093 117 TRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS 196 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 196 (413)
+++|+.|+.+.+++++...++.+....|+.....+......+++|+|+||+.|...+.........+++||+||||++.+
T Consensus 114 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~ 193 (410)
T 2j0s_A 114 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLN 193 (410)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTS
T ss_pred cHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHh
Confidence 99999999999999998889999999999887777666667789999999999999988878888899999999999999
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHh
Q 015093 197 RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET 276 (413)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (413)
.++...+..++..++...+++++|||+++........++..+..+...........+.+.+........+...+..++..
T Consensus 194 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~ 273 (410)
T 2j0s_A 194 KGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT 273 (410)
T ss_dssp TTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHh
Confidence 98999999999999989999999999998887778888888888777777777788888888888777789999999988
Q ss_pred cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC
Q 015093 277 LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 277 ~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 356 (413)
...+++||||++++.++.+++.|.+.++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.
T Consensus 274 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~ 353 (410)
T 2j0s_A 274 LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDL 353 (410)
T ss_dssp HTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSC
T ss_pred cCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhccC
Q 015093 357 PTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413 (413)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (413)
|.+...|.||+||+||.|++|.|++++++.+...++.+.++++..++++|.+..+++
T Consensus 354 p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (410)
T 2j0s_A 354 PNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 410 (410)
T ss_dssp CSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCCTTTC
T ss_pred CCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccchhhcC
Confidence 999999999999999999999999999999999999999999999999999887764
No 3
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=7.1e-61 Score=451.15 Aligned_cols=385 Identities=72% Similarity=1.122 Sum_probs=337.0
Q ss_pred CcccccccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCc
Q 015093 29 QDFFVSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQ 108 (413)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~ 108 (413)
......+.+...+|+.+++++.+.+.+...++..|+++|.++++.+.+++++++.+|||+|||+++++++++.+.....+
T Consensus 29 ~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~ 108 (414)
T 3eiq_A 29 GVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKA 108 (414)
T ss_dssp -CCCCCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCS
T ss_pred cccCCCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCc
Confidence 34455677788999999999999999999999999999999999999999999999999999999999999988766566
Q ss_pred eeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcCCCCCCCccEEE
Q 015093 109 CQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS-AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFV 187 (413)
Q Consensus 109 ~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iI 187 (413)
.+++|++|+++|+.|+.+.+++++...+..+....|+........... ..++|+|+||+.|.+.+........++++||
T Consensus 109 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vV 188 (414)
T 3eiq_A 109 TQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 188 (414)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEE
T ss_pred eeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEE
Confidence 789999999999999999999999888899999998887666554443 6789999999999999988887788899999
Q ss_pred EccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHH
Q 015093 188 LDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKL 267 (413)
Q Consensus 188 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (413)
+||||++.+.++...+..++..++.+.+++++|||+++........++..+..+...........+.+.+........+.
T Consensus 189 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (414)
T 3eiq_A 189 LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKL 268 (414)
T ss_dssp ECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHH
T ss_pred EECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHH
Confidence 99999999888999999999999999999999999999988888999999988888777778888888888888878899
Q ss_pred HHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCC
Q 015093 268 DTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQ 347 (413)
Q Consensus 268 ~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~ 347 (413)
..+..++.....+++||||++++.++.+++.|.+.++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|+
T Consensus 269 ~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 348 (414)
T 3eiq_A 269 DTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 348 (414)
T ss_dssp HHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGG
T ss_pred HHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccC
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhccC
Q 015093 348 VSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413 (413)
Q Consensus 348 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (413)
+++||+++.|.|...|.||+||+||.|++|.|++++++.+...+..+.++++..++.+|.++.+||
T Consensus 349 v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 414 (414)
T 3eiq_A 349 VSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 414 (414)
T ss_dssp CSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC------
T ss_pred CCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999886
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-58 Score=436.51 Aligned_cols=375 Identities=34% Similarity=0.522 Sum_probs=331.8
Q ss_pred ccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc----------
Q 015093 37 EVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES---------- 106 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~---------- 106 (413)
.+..+|+++++++.+.+.+...|+..|+++|.++++.+..++++++.+|||+|||++++++++..+....
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccc
Confidence 4457799999999999999999999999999999999999999999999999999999999988764432
Q ss_pred --------CceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCC
Q 015093 107 --------LQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL 178 (413)
Q Consensus 107 --------~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~ 178 (413)
.+++++|++|+++|+.|+++.++++....++.+..++|+.........+..+++|+|+||+.|...+.....
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~ 171 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKI 171 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSB
T ss_pred ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCc
Confidence 225799999999999999999999988888999999999887777666777889999999999999988877
Q ss_pred CCCCccEEEEccchhhhccCcHHHHHHHHhh--CCC--CceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCce
Q 015093 179 RPDYIRMFVLDEADEMLSRGFKDQIYDIFQH--LPG--KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIK 254 (413)
Q Consensus 179 ~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~--~~~--~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (413)
.+.++++||+||||++.+.++...+..++.. .+. ..+++++|||+++........++..+..+...........+.
T Consensus 172 ~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 251 (417)
T 2i4i_A 172 GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENIT 251 (417)
T ss_dssp CCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEE
T ss_pred ChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCce
Confidence 7888999999999999988899999888874 332 578999999999888888888998888777666555666666
Q ss_pred EEEEEeCccccHHHHHHHHHHhc-CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEE
Q 015093 255 QFHVNVDKEEWKLDTLCDLYETL-AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVL 333 (413)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 333 (413)
+.+..... ..+...+..+++.. ..+++||||++++.++.+++.|++.++.+..+||+++..+|.++++.|++|+.+||
T Consensus 252 ~~~~~~~~-~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vl 330 (417)
T 2i4i_A 252 QKVVWVEE-SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPIL 330 (417)
T ss_dssp EEEEECCG-GGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEE
T ss_pred EEEEEecc-HhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEE
Confidence 66665554 56778888888876 56789999999999999999999999999999999999999999999999999999
Q ss_pred EEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhcc
Q 015093 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADL 412 (413)
Q Consensus 334 i~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|||+++++|+|+|++++||++++|.|...|.||+||+||.|+.|.|++++++.+......+.+++....+++|.++.++
T Consensus 331 vaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 409 (417)
T 2i4i_A 331 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 409 (417)
T ss_dssp EECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHHHHH
T ss_pred EECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988764
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4.9e-58 Score=429.73 Aligned_cols=372 Identities=41% Similarity=0.655 Sum_probs=334.8
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
..+|+++++++.+.+.+.+.|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....+.+++|++|++
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 99 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTR 99 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCH
Confidence 46899999999999999999999999999999999999999999999999999999999998887665566899999999
Q ss_pred HHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC
Q 015093 119 ELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG 198 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~ 198 (413)
+|+.|+.+.++++....+..+....|+.............++|+|+||+.|...+......+.++++||+||||++.+..
T Consensus 100 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~ 179 (400)
T 1s2m_A 100 ELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRD 179 (400)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHH
T ss_pred HHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhc
Confidence 99999999999999888899999999888766666666788999999999999888877778889999999999998887
Q ss_pred cHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcC
Q 015093 199 FKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLA 278 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (413)
+...+..++..++...+++++|||++..........+..+..+.... ......+...+..... ..+...+..++....
T Consensus 180 ~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~k~~~l~~~~~~~~ 257 (400)
T 1s2m_A 180 FKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYYAFVEE-RQKLHCLNTLFSKLQ 257 (400)
T ss_dssp HHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEEEECCG-GGHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEEEEech-hhHHHHHHHHHhhcC
Confidence 88888899988888899999999999888888888888877654433 3344555555554443 567788888888888
Q ss_pred CCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 358 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~ 358 (413)
.+++||||++++.++.+++.|++.++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|.
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~ 337 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPK 337 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCS
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhcc
Q 015093 359 QPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADL 412 (413)
Q Consensus 359 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|...|.||+||+||.|++|.|++++++.+...+..+.+.++..++++|.++.+.
T Consensus 338 s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 391 (400)
T 1s2m_A 338 TAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDKS 391 (400)
T ss_dssp SHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCGG
T ss_pred CHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccccccc
Confidence 999999999999999999999999999999999999999999999999887663
No 6
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=8.8e-60 Score=440.84 Aligned_cols=385 Identities=62% Similarity=0.953 Sum_probs=193.1
Q ss_pred CCcccccccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccC
Q 015093 28 GQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESL 107 (413)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~ 107 (413)
...+...+++...+|+.+++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....
T Consensus 9 ~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~ 88 (394)
T 1fuu_A 9 ESQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVK 88 (394)
T ss_dssp --CEEESSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCC
T ss_pred ccchhhhcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCC
Confidence 34455567777788999999999999999999999999999999999999999999999999999999999988876666
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEE
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFV 187 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iI 187 (413)
+++++|++|+++|+.|+.+.+.++....+..+..+.|+........... .++|+|+||+.|...+........++++||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vI 167 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFI 167 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 7799999999999999999999998888899999999887665544444 579999999999999988777788899999
Q ss_pred EccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHH
Q 015093 188 LDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKL 267 (413)
Q Consensus 188 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (413)
+||||++.+.++...+..++..+++..+++++|||+++........++..+..+...........+...+........+.
T Consensus 168 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (394)
T 1fuu_A 168 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKY 247 (394)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC----------------------
T ss_pred EEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHH
Confidence 99999998888999999999999989999999999999888888889999888877776666666666666555555577
Q ss_pred HHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCC
Q 015093 268 DTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQ 347 (413)
Q Consensus 268 ~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~ 347 (413)
..+..+++....+++||||++++.++.+++.|++.++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|+
T Consensus 248 ~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~ 327 (394)
T 1fuu_A 248 ECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQ 327 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCccc
Confidence 77777887777789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhccC
Q 015093 348 VSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413 (413)
Q Consensus 348 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (413)
+++||++++|.|...|.||+||+||.|++|.|++++++.+...+..+.++++..++.+|..+.+++
T Consensus 328 ~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 393 (394)
T 1fuu_A 328 VSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 393 (394)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999887764
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=7.7e-57 Score=420.42 Aligned_cols=369 Identities=40% Similarity=0.653 Sum_probs=326.3
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
.+|+.+++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....+.+++|++|+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 46888999999999999999999999999999999999999999999999999999999988876665679999999999
Q ss_pred HHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc-
Q 015093 120 LAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILS-AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS- 196 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~- 196 (413)
|+.|+.+.++++.... ++++..+.|+.........+. ..++|+|+||+.+...+......+.++++||+||||++.+
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~ 167 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 167 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSS
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhc
Confidence 9999999999997765 788999999887665554443 4579999999999999988877788899999999999876
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCc-cccCCceEEEEEeCccccHHHHHHHHHH
Q 015093 197 RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDE-LTLEGIKQFHVNVDKEEWKLDTLCDLYE 275 (413)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (413)
.++...+..++...+...+++++|||+++........++..+..+...... .....+...+..... ..+...+..++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~ 246 (391)
T 1xti_A 168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD-NEKNRKLFDLLD 246 (391)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCG-GGHHHHHHHHHH
T ss_pred cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCc-hhHHHHHHHHHH
Confidence 356777888888888899999999999999888888999888877665443 333455555554443 567888888888
Q ss_pred hcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcC
Q 015093 276 TLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355 (413)
Q Consensus 276 ~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 355 (413)
....+++||||++++.++.+++.|.+.++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 247 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~ 326 (391)
T 1xti_A 247 VLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 326 (391)
T ss_dssp HSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESS
T ss_pred hcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHhhhcccCCCCCcceEEEEeccc-cHHHHHHHHHHhccccccCCcch
Q 015093 356 LPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DDRMLADIQRFYNVVIEELPANV 409 (413)
Q Consensus 356 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 409 (413)
.|+|...|.||+||+||.|++|.|++++++. +...+..+.+.++..++++|.++
T Consensus 327 ~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (391)
T 1xti_A 327 MPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 381 (391)
T ss_dssp CCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCC
T ss_pred CCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCccc
Confidence 9999999999999999999999999999976 55678899999999999998763
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.4e-56 Score=417.66 Aligned_cols=367 Identities=40% Similarity=0.707 Sum_probs=328.5
Q ss_pred cccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc
Q 015093 38 VYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA 115 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~ 115 (413)
...+|+++++++.+.+.+...|+..|+++|.++++.+..+ +++++++|||+|||++++++++..+.....+.+++|++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 82 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA 82 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence 4578999999999999999999999999999999999998 88999999999999999999999887666677999999
Q ss_pred ccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 116 PTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 116 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
|+++|+.|+.+.+++++...+..+....++...... ...++|+|+||+.+...+......+.++++||+||||++.
T Consensus 83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~ 158 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNML 158 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhc
Confidence 999999999999999988778888887776542221 2367999999999999998887778889999999999987
Q ss_pred c-cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHH
Q 015093 196 S-RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLY 274 (413)
Q Consensus 196 ~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (413)
+ ..+...+..+...++.+.+++++|||+++........++..+..+...........+...+........+...+..++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (395)
T 3pey_A 159 DQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELY 238 (395)
T ss_dssp HSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHH
Confidence 6 567788888889898899999999999998888999999888887777777777788888887777777888888888
Q ss_pred HhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEc
Q 015093 275 ETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 354 (413)
Q Consensus 275 ~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~ 354 (413)
.....+++||||++++.++.+++.|++.+..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 239 ~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~ 318 (395)
T 3pey_A 239 GLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNY 318 (395)
T ss_dssp TTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEES
T ss_pred HhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEc
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC------ChhHHHhhhcccCCCCCcceEEEEeccc-cHHHHHHHHHHhc-cccccCCcc
Q 015093 355 DLPT------QPENYLHRIGRSGRFGRKGVAINFVTRD-DDRMLADIQRFYN-VVIEELPAN 408 (413)
Q Consensus 355 ~~~~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~ 408 (413)
+.|. |...|.||+||+||.|++|.|++++.+. +......+.+++. ..+..+|.+
T Consensus 319 ~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 380 (395)
T 3pey_A 319 DLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTD 380 (395)
T ss_dssp SCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSS
T ss_pred CCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCChH
Confidence 9998 9999999999999999999999999875 4567788888888 677776654
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=7.2e-56 Score=416.78 Aligned_cols=371 Identities=40% Similarity=0.669 Sum_probs=326.5
Q ss_pred cccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc
Q 015093 38 VYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA 115 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~ 115 (413)
...+|+.+++++.+.+.+.+.|+..|+++|.++++.+.++ +++++.+|||+|||++++++++..+.....+++++|++
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 102 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 102 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEEC
Confidence 3578999999999999999999999999999999999987 88999999999999999999999887776677999999
Q ss_pred ccHHHHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-CCCCCCCccEEEEccchh
Q 015093 116 PTRELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR-QSLRPDYIRMFVLDEADE 193 (413)
Q Consensus 116 P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~-~~~~~~~~~~iIiDE~h~ 193 (413)
|+++|+.|+.+.++++.... +..+....++...... ....++|+|+||+.+...+.. ....+.++++||+||||+
T Consensus 103 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~ 179 (412)
T 3fht_A 103 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 179 (412)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHH
Confidence 99999999999999987654 5677777776543222 133578999999999998865 445567899999999999
Q ss_pred hhc-cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHH
Q 015093 194 MLS-RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCD 272 (413)
Q Consensus 194 ~~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 272 (413)
+.+ ..+...+..+...++.+.+++++|||+++........++..+..+...........+.+.+........+...+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 259 (412)
T 3fht_A 180 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCN 259 (412)
T ss_dssp HHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHH
T ss_pred HhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHH
Confidence 876 6778888889999988999999999999999899999999988887777777777888888887777788889999
Q ss_pred HHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEE
Q 015093 273 LYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 (413)
Q Consensus 273 ~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi 352 (413)
++.....+++||||++++.++.+++.|.+.+..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||
T Consensus 260 ~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi 339 (412)
T 3fht_A 260 LYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI 339 (412)
T ss_dssp HHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEE
T ss_pred HHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEE
Confidence 99988889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCC------CChhHHHhhhcccCCCCCcceEEEEecccc-HHHHHHHHHHhccccccCCcchhc
Q 015093 353 NYDLP------TQPENYLHRIGRSGRFGRKGVAINFVTRDD-DRMLADIQRFYNVVIEELPANVAD 411 (413)
Q Consensus 353 ~~~~~------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 411 (413)
+++.| .+...|.||+||+||.|++|.|++++++.+ ...+..+.+++...++.++.+.++
T Consensus 340 ~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 405 (412)
T 3fht_A 340 NFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 405 (412)
T ss_dssp ESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC------
T ss_pred EECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCccHH
Confidence 99999 467899999999999999999999999765 788899999999998888765443
No 10
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.4e-55 Score=403.97 Aligned_cols=360 Identities=36% Similarity=0.625 Sum_probs=318.6
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCC-CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
..+|+.+++++.+.+.+.+.|+..|+++|.++++.+.++ +++++.+|||+|||++++.+++..+... .+.+++|++|+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~ 83 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPT 83 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSC
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCC
Confidence 467999999999999999999999999999999999988 6899999999999999999998876554 35589999999
Q ss_pred HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc
Q 015093 118 RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR 197 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~ 197 (413)
++|+.|+.+.++++....+..+....|+........... .++|+|+||+.+...+......+.+++++|+||||.+.+.
T Consensus 84 ~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~ 162 (367)
T 1hv8_A 84 RELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNM 162 (367)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhh
Confidence 999999999999998877888989998887665554444 5799999999999999888777888999999999999988
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc
Q 015093 198 GFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL 277 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (413)
++...+..++...+...+++++|||+++........+++.......... ..+...+.... ...+...+..+++ .
T Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~l~~~l~-~ 236 (367)
T 1hv8_A 163 GFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN----ANIEQSYVEVN-ENERFEALCRLLK-N 236 (367)
T ss_dssp TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS----SSSEEEEEECC-GGGHHHHHHHHHC-S
T ss_pred chHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC----CCceEEEEEeC-hHHHHHHHHHHHh-c
Confidence 8889999999999889999999999998888888888877655443322 23444444443 3567777777776 4
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 357 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~ 357 (413)
..+++||||++++.++.+++.|++.+..+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++||+++.|
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~ 316 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLP 316 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCC
Q 015093 358 TQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELP 406 (413)
Q Consensus 358 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (413)
.|...|.||+||+||.|++|.|++++++.+...+..+.+.++..+++++
T Consensus 317 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 317 QNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp SCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred CCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 9999999999999999999999999999999999999999999888775
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1e-55 Score=422.83 Aligned_cols=369 Identities=40% Similarity=0.673 Sum_probs=174.8
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
..+|+.+++++.+.+.+..+||..|+++|.++++.++.+ +++++++|||||||++|+++++..+.....++++||++|
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 170 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 170 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECS
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeC
Confidence 468999999999999999999999999999999999987 889999999999999999999998877776779999999
Q ss_pred cHHHHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-CCCCCCCccEEEEccchhh
Q 015093 117 TRELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR-QSLRPDYIRMFVLDEADEM 194 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~-~~~~~~~~~~iIiDE~h~~ 194 (413)
+++|+.|+.+.++++.... +..+....++....... ...++|+|+||+.|.+++.+ ..+.+.++++||+||+|++
T Consensus 171 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~ 247 (479)
T 3fmp_B 171 TYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 247 (479)
T ss_dssp SHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHH
T ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHH
Confidence 9999999999999887654 56666666655432221 23568999999999998866 3455678999999999998
Q ss_pred hc-cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHH
Q 015093 195 LS-RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDL 273 (413)
Q Consensus 195 ~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (413)
.+ ..+...+..+.+.++.+++++++|||+++....+...++..+..+...........+.+.+........+...+..+
T Consensus 248 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 327 (479)
T 3fmp_B 248 IATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNL 327 (479)
T ss_dssp HTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------------
T ss_pred hhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHH
Confidence 76 57778888899999989999999999999988999999998888877776666667777776666666777788888
Q ss_pred HHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE
Q 015093 274 YETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 353 (413)
Q Consensus 274 ~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~ 353 (413)
+.....+++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 328 ~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~ 407 (479)
T 3fmp_B 328 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 407 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE
Confidence 88777789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhHHHhhhcccCCCCCcceEEEEecccc-HHHHHHHHHHhccccccCCcchh
Q 015093 354 YDLPT------QPENYLHRIGRSGRFGRKGVAINFVTRDD-DRMLADIQRFYNVVIEELPANVA 410 (413)
Q Consensus 354 ~~~~~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 410 (413)
++.|. +...|.||+||+||.|++|.|++++++.+ ...+..+.+++...++.++.+-.
T Consensus 408 ~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 471 (479)
T 3fmp_B 408 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDL 471 (479)
T ss_dssp ----------------------------------------------------------------
T ss_pred ecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCccH
Confidence 99994 66899999999999999999999999765 67888999999988888776543
No 12
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.4e-52 Score=381.14 Aligned_cols=336 Identities=31% Similarity=0.536 Sum_probs=288.5
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHH
Q 015093 47 LKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEK 126 (413)
Q Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~ 126 (413)
+++.+.+.++.+|+..|+++|.++++.+.+++++++.+|||+|||++++++++.. +.+++|++|+++|+.|+.+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999888764 4589999999999999999
Q ss_pred HHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHH
Q 015093 127 VMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDI 206 (413)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 206 (413)
.++++....+..+..+.|+........... .++|+|+||+.|.+.+......+.++++||+||||++.+.++...+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~ 153 (337)
T 2z0m_A 75 HIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKII 153 (337)
T ss_dssp HHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred HHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHH
Confidence 999998888889999999887665554444 4899999999999988887777788999999999999988899999999
Q ss_pred HhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEE
Q 015093 207 FQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFV 286 (413)
Q Consensus 207 ~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~ 286 (413)
+...+...+++++|||+++........++..+..+... .....+........... ......+.....+++||||
T Consensus 154 ~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~lvf~ 227 (337)
T 2z0m_A 154 LAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW---RSKVQALRENKDKGVIVFV 227 (337)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS---HHHHHHHHTCCCSSEEEEC
T ss_pred HhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH---HHHHHHHHhCCCCcEEEEE
Confidence 99999889999999999998888888888877655332 23334444444444321 2233556667778999999
Q ss_pred cCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhh
Q 015093 287 NTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHR 366 (413)
Q Consensus 287 ~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~ 366 (413)
++++.++.+++.|. .+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|.|...|.||
T Consensus 228 ~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~ 303 (337)
T 2z0m_A 228 RTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHR 303 (337)
T ss_dssp SCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHH
T ss_pred cCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHh
Confidence 99999999998886 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCcceEEEEeccccHHHHHHHHHHhcc
Q 015093 367 IGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNV 400 (413)
Q Consensus 367 ~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 400 (413)
+||+||.|++|.|++++. .+....+.+.+.++.
T Consensus 304 ~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 304 IGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp HTTBCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred cCccccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 999999999999999999 888888888777653
No 13
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-54 Score=413.07 Aligned_cols=366 Identities=37% Similarity=0.621 Sum_probs=272.5
Q ss_pred CccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
.+...++++.+.+.+...|+..|+++|.++++.+.++ +++++.+|||||||++++++++..+.....+.+++|++|++
T Consensus 120 ~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~ 199 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSR 199 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCH
T ss_pred cccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcH
Confidence 3555678889999999999999999999999999998 88999999999999999999999887776677999999999
Q ss_pred HHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc-c
Q 015093 119 ELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS-R 197 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~-~ 197 (413)
+|+.|+.+.+++++...+..+....++..... ....++|+|+||+.+...+......+.++++||+||||++.+ .
T Consensus 200 ~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~ 275 (508)
T 3fho_A 200 ELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQ 275 (508)
T ss_dssp HHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC-
T ss_pred HHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccC
Confidence 99999999999998766666655555433221 123679999999999999988888888899999999999876 5
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc
Q 015093 198 GFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL 277 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (413)
.+...+..+...++.+.+++++|||+++........+...+..+...........+............+...+..++...
T Consensus 276 ~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~ 355 (508)
T 3fho_A 276 GLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLL 355 (508)
T ss_dssp -CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhc
Confidence 68888889999999899999999999988888999999988877777666666777777777766677888888888888
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 357 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~ 357 (413)
..+++||||++++.++.+++.|.+.+..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p 435 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMP 435 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------CChhHHHhhhcccCCCCCcceEEEEecc-ccHHHHHHHHHHhccccccCCcchh
Q 015093 358 ------TQPENYLHRIGRSGRFGRKGVAINFVTR-DDDRMLADIQRFYNVVIEELPANVA 410 (413)
Q Consensus 358 ------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (413)
.|...|.||+||+||.|++|.|++++.+ .+...+..+.++++..++.+|.+.+
T Consensus 436 ~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~~ 495 (508)
T 3fho_A 436 LDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDY 495 (508)
T ss_dssp CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-------
T ss_pred CcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCccH
Confidence 7899999999999999999999999985 4667888999999999998886543
No 14
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.6e-52 Score=408.88 Aligned_cols=358 Identities=29% Similarity=0.462 Sum_probs=295.9
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhhhhhhh--CCCcEEEeCCCCCchhHHHHHHHHHhccccc----CceeEEEEcccHH
Q 015093 46 GLKENLLRGIYAYGFEKPSAIQQRGIVPFC--KGLDVIQQAQSGTGKTATFCSGILQQLDYES----LQCQALVLAPTRE 119 (413)
Q Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~----~~~~~lvl~P~~~ 119 (413)
.+++++.+.+..+|+..|+++|.++++.++ .++++++.+|||+|||++|+++++..+.... .+.++||++|+++
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 27 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHH
Confidence 399999999999999999999999999999 6789999999999999999999998775542 2458999999999
Q ss_pred HHHHHHHHHHHhhcc----cCceEEEEECCcchHHHHHHH-hcCCcEEEeChHHHHHHHHcC-CCCCCCccEEEEccchh
Q 015093 120 LAQQIEKVMRALGDY----MGVKVHACVGGTSVREDQRIL-SAGVHVVVGTPGRVFDMLRRQ-SLRPDYIRMFVLDEADE 193 (413)
Q Consensus 120 l~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~T~~~l~~~~~~~-~~~~~~~~~iIiDE~h~ 193 (413)
|+.|+.+.++++... ....+....|+.........+ ...++|+|+||+.|...+... ...+..+++||+||||+
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH
Confidence 999999999987632 245677777877665554444 447899999999999887654 33456789999999999
Q ss_pred hhccCcHHHHHHHHhhCC-------CCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCC----ccccCCceEEEEEeCc
Q 015093 194 MLSRGFKDQIYDIFQHLP-------GKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD----ELTLEGIKQFHVNVDK 262 (413)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~-------~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 262 (413)
+.++++...+..++..++ ...+++++|||+++........++..+..+..... ......+.........
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 999888888777766543 36799999999999888888888888766654332 2223344444444443
Q ss_pred cccH----HHHHHHHHHh-cCCCcEEEEEcCcccHHHHHHHHhhC---CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEE
Q 015093 263 EEWK----LDTLCDLYET-LAITQSVIFVNTRRKVDWLTDQMRSR---DHTVSATHGDMDQNSRDIIMREFRSGSSRVLI 334 (413)
Q Consensus 263 ~~~~----~~~l~~~~~~-~~~~~~lIf~~~~~~a~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli 334 (413)
.... ...+...+.. ....++||||++++.++.+++.|.+. ++.+..+||++++.+|.++++.|++|+.+|||
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLV 346 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEE
Confidence 3222 2333333333 45679999999999999999999876 88999999999999999999999999999999
Q ss_pred EeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccc
Q 015093 335 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIE 403 (413)
Q Consensus 335 ~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (413)
||+++++|+|+|++++||+++.|.+...|+||+||+||.|++|.|++++++.+...+..+.+.....+.
T Consensus 347 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~ 415 (579)
T 3sqw_A 347 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIA 415 (579)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCC
T ss_pred EcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999888766554
No 15
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.9e-52 Score=408.28 Aligned_cols=357 Identities=29% Similarity=0.471 Sum_probs=293.8
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhhhhhhh--CCCcEEEeCCCCCchhHHHHHHHHHhccccc----CceeEEEEcccHHH
Q 015093 47 LKENLLRGIYAYGFEKPSAIQQRGIVPFC--KGLDVIQQAQSGTGKTATFCSGILQQLDYES----LQCQALVLAPTREL 120 (413)
Q Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~----~~~~~lvl~P~~~l 120 (413)
+++.+.+.+...|+..|+++|.++++.++ .++++++++|||||||++|+++++..+.... .+.++||++|+++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 99999999999999999999999999999 6788999999999999999999998875543 23589999999999
Q ss_pred HHHHHHHHHHhhcc----cCceEEEEECCcchHHHHHHH-hcCCcEEEeChHHHHHHHHcC-CCCCCCccEEEEccchhh
Q 015093 121 AQQIEKVMRALGDY----MGVKVHACVGGTSVREDQRIL-SAGVHVVVGTPGRVFDMLRRQ-SLRPDYIRMFVLDEADEM 194 (413)
Q Consensus 121 ~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~T~~~l~~~~~~~-~~~~~~~~~iIiDE~h~~ 194 (413)
+.|+.+.++++... ....+....|+.........+ ...++|+|+||+.|.+.+... ...+..+++||+||||++
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 99999999987532 245677777777655544433 457899999999999887653 224566899999999999
Q ss_pred hccCcHHHHHHHHhhC-------CCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCc----cccCCceEEEEEeCcc
Q 015093 195 LSRGFKDQIYDIFQHL-------PGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDE----LTLEGIKQFHVNVDKE 263 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~-------~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 263 (413)
.++++...+..++..+ +...+++++|||+++........++..+..+...... .....+..........
T Consensus 239 ~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (563)
T 3i5x_A 239 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318 (563)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred hccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchh
Confidence 9888888877776554 2367899999999988888888888877665543322 2233444444444433
Q ss_pred ccHH----HHHHHHHHh-cCCCcEEEEEcCcccHHHHHHHHhhC---CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEE
Q 015093 264 EWKL----DTLCDLYET-LAITQSVIFVNTRRKVDWLTDQMRSR---DHTVSATHGDMDQNSRDIIMREFRSGSSRVLIT 335 (413)
Q Consensus 264 ~~~~----~~l~~~~~~-~~~~~~lIf~~~~~~a~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~ 335 (413)
.... ..+...+.. ...+++||||++++.++.+++.|.+. ++.+..+||++++.+|.++++.|++|+.+||||
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLva 398 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 398 (563)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 3322 233333333 45679999999999999999999876 889999999999999999999999999999999
Q ss_pred eCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccc
Q 015093 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIE 403 (413)
Q Consensus 336 t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (413)
|+++++|+|+|++++||+++.|.+...|+||+||+||.|++|.|++++.+.+...+..+.+.....++
T Consensus 399 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~ 466 (563)
T 3i5x_A 399 TDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIA 466 (563)
T ss_dssp CGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCC
T ss_pred cchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999888765544
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.4e-50 Score=391.52 Aligned_cols=338 Identities=16% Similarity=0.210 Sum_probs=270.8
Q ss_pred CCCCCHHHHHHHHh-CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHH
Q 015093 44 SMGLKENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQ 122 (413)
Q Consensus 44 ~~~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~ 122 (413)
.+++++.+.+.|+. +|+..|+++|.++++.++.|+++++.+|||+|||++|++|++.. .+++||++|+++|+.
T Consensus 25 ~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------~g~~lVisP~~~L~~ 98 (591)
T 2v1x_A 25 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------DGFTLVICPLISLME 98 (591)
T ss_dssp CSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------SSEEEEECSCHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------CCcEEEEeCHHHHHH
Confidence 47889999999998 79999999999999999999999999999999999999998753 348999999999999
Q ss_pred HHHHHHHHhhcccCceEEEEECCcchHHHHHHH------hcCCcEEEeChHHHH------HHHHcCCCCCCCccEEEEcc
Q 015093 123 QIEKVMRALGDYMGVKVHACVGGTSVREDQRIL------SAGVHVVVGTPGRVF------DMLRRQSLRPDYIRMFVLDE 190 (413)
Q Consensus 123 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~Iii~T~~~l~------~~~~~~~~~~~~~~~iIiDE 190 (413)
|+.+.++++ ++.+..+.++.......... ....+|+|+||++|. +.+.. ...+..+++||+||
T Consensus 99 q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~iViDE 173 (591)
T 2v1x_A 99 DQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRIAVDE 173 (591)
T ss_dssp HHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEEEEEET
T ss_pred HHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcEEEEEC
Confidence 999999887 77888888887655443322 357899999999874 22222 22345689999999
Q ss_pred chhhhccC--cHHHHH---HHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCc-cc
Q 015093 191 ADEMLSRG--FKDQIY---DIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDK-EE 264 (413)
Q Consensus 191 ~h~~~~~~--~~~~~~---~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 264 (413)
||.+..++ +...+. .+...+ ++.+++++|||+++.....+..++..+....... ....+.+......... ..
T Consensus 174 AH~is~~g~dfr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~~~~~~ 251 (591)
T 2v1x_A 174 VHCCSQWGHDFRPDYKALGILKRQF-PNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVRQKPSNTE 251 (591)
T ss_dssp GGGGSTTCTTCCGGGGGGGHHHHHC-TTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEEECCSSHH
T ss_pred cccccccccccHHHHHHHHHHHHhC-CCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEEeCCCcHH
Confidence 99987655 333322 233344 4688999999999887776666665443222222 2333444433333222 23
Q ss_pred cHHHHHHHHHHhc-CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCC
Q 015093 265 WKLDTLCDLYETL-AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGI 343 (413)
Q Consensus 265 ~~~~~l~~~~~~~-~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~ 343 (413)
.....+..++... .++++||||++++.++.+++.|.+.++.+..+||+++..+|.++++.|.+|+.+|||||+++++|+
T Consensus 252 ~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GI 331 (591)
T 2v1x_A 252 DFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGI 331 (591)
T ss_dssp HHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTC
T ss_pred HHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCC
Confidence 4556666766543 667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHH
Q 015093 344 DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 344 d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 394 (413)
|+|++++||+++.|.|...|.|++||+||.|++|.|++++++.|......+
T Consensus 332 D~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 332 DKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp CCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred CcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 999999999999999999999999999999999999999988776555443
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=8e-50 Score=382.67 Aligned_cols=338 Identities=19% Similarity=0.275 Sum_probs=273.0
Q ss_pred cCccCCCCCHHHHHHHHh-CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 40 DSFDSMGLKENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
..|+.+++++.+.+.+++ +|+..|+++|.++++.+++|+++++.+|||+|||++|+++++.. .++++|++|++
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~ 75 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLI 75 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChH
Confidence 578899999999999998 89999999999999999999999999999999999999888753 24799999999
Q ss_pred HHHHHHHHHHHHhhcccCceEEEEECCcchHHHH----HHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhh
Q 015093 119 ELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQ----RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEM 194 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~ 194 (413)
+|+.|+.+.++++ ++.+..+.++....... .......+|+++||++|........+...++++||+||||.+
T Consensus 76 aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i 151 (523)
T 1oyw_A 76 SLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCI 151 (523)
T ss_dssp HHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGG
T ss_pred HHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcccc
Confidence 9999999999885 67777887776644332 233456899999999985321111122356899999999998
Q ss_pred hccC--cHH---HHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhc--CCCEEEEecCCccccCCceEEEEEeCccccHH
Q 015093 195 LSRG--FKD---QIYDIFQHLPGKIQVGVFSATMPPEALEITRKFM--NKPVRILVKRDELTLEGIKQFHVNVDKEEWKL 267 (413)
Q Consensus 195 ~~~~--~~~---~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (413)
.+++ +.. .+..+...++ +.+++++|||+++.....+...+ ..+.... .....+++...... ...+.
T Consensus 152 ~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~---~~~~r~~l~~~v~~---~~~~~ 224 (523)
T 1oyw_A 152 SQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQI---SSFDRPNIRYMLME---KFKPL 224 (523)
T ss_dssp CTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE---CCCCCTTEEEEEEE---CSSHH
T ss_pred CcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe---CCCCCCceEEEEEe---CCCHH
Confidence 7654 332 3334455554 57899999999887655443333 2333222 12223444333222 24567
Q ss_pred HHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCC
Q 015093 268 DTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQ 347 (413)
Q Consensus 268 ~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~ 347 (413)
..+..++....++++||||++++.++.+++.|++.++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|+
T Consensus 225 ~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~ 304 (523)
T 1oyw_A 225 DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPN 304 (523)
T ss_dssp HHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTT
T ss_pred HHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccC
Confidence 77888888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHH
Q 015093 348 VSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 348 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 394 (413)
++.||+++.|.|...|.|++||+||.|++|.|++++++.|....+.+
T Consensus 305 v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~ 351 (523)
T 1oyw_A 305 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (523)
T ss_dssp CCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred ccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHH
Confidence 99999999999999999999999999999999999988776655444
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2e-48 Score=365.70 Aligned_cols=325 Identities=20% Similarity=0.260 Sum_probs=255.8
Q ss_pred HHHHHHh-CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHH
Q 015093 51 LLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMR 129 (413)
Q Consensus 51 ~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~ 129 (413)
+.+.+++ +++ +|+++|.++++.+.+++++++.+|||||||++++++++..+ ..+++++|++|+++|+.|+.+.++
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~~ 85 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQ 85 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHHH
Confidence 4444544 455 89999999999999999999999999999999988887765 234599999999999999999999
Q ss_pred HhhcccCceEEEEECCcchH---HHHHHHh-cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc---------
Q 015093 130 ALGDYMGVKVHACVGGTSVR---EDQRILS-AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS--------- 196 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~--------- 196 (413)
+++. .++++..++|+.... .....+. ..++|+|+||+.|.+.+.. ....++++||+||||++..
T Consensus 86 ~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l 162 (414)
T 3oiy_A 86 KLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLL 162 (414)
T ss_dssp HHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHH
T ss_pred HHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHH
Confidence 9887 788999999998763 3333333 3489999999999877764 4456789999999997653
Q ss_pred --cCcHHH-HHHHHhhCC-----------CCceEEEEeeeC-ChhHH-HHHHHhcCCCEEEEecCCccccCCceEEEEEe
Q 015093 197 --RGFKDQ-IYDIFQHLP-----------GKIQVGVFSATM-PPEAL-EITRKFMNKPVRILVKRDELTLEGIKQFHVNV 260 (413)
Q Consensus 197 --~~~~~~-~~~~~~~~~-----------~~~~~i~lSAT~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (413)
.++... +..++..++ ...+++++|||+ +.... .....+.. +...........+.+.+...
T Consensus 163 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~ 238 (414)
T 3oiy_A 163 MMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS 238 (414)
T ss_dssp HHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEEESS
T ss_pred hhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchheeecc
Confidence 344444 666666654 678999999994 43332 22333322 11122223334455544433
Q ss_pred CccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeE-eecCCCCHHHHHHHHHHHhcCCCeEEEE----
Q 015093 261 DKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVS-ATHGDMDQNSRDIIMREFRSGSSRVLIT---- 335 (413)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~vli~---- 335 (413)
.+...+..+++. .++++||||++++.++.+++.|++.++.+. .+||. +|+ ++.|++|+.+||||
T Consensus 239 ----~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~ 307 (414)
T 3oiy_A 239 ----RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAY 307 (414)
T ss_dssp ----CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCT
T ss_pred ----CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCc
Confidence 355566777766 347999999999999999999999999998 88985 344 99999999999999
Q ss_pred eCccccCCCCCC-CCEEEEcCCC--CChhHHHhhhcccCCCC----CcceEEEEeccccHHHHHHHHHHhc
Q 015093 336 TDLLARGIDVQQ-VSLVINYDLP--TQPENYLHRIGRSGRFG----RKGVAINFVTRDDDRMLADIQRFYN 399 (413)
Q Consensus 336 t~~~~~G~d~~~-~~~vi~~~~~--~s~~~~~Q~~GR~~R~g----~~g~~~~~~~~~~~~~~~~~~~~~~ 399 (413)
|+++++|+|+|+ +++||+++.| .|...|.||+||+||.| +.|.+++++ .+...+..+.+++.
T Consensus 308 T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 308 YGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp TCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred CchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 999999999999 9999999999 99999999999999987 479999998 67777888888887
No 19
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=4.8e-47 Score=379.04 Aligned_cols=350 Identities=19% Similarity=0.281 Sum_probs=273.4
Q ss_pred CccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhh-hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
+|+++++++.+.+.++..|+..|+++|.++++. +.+++++++++|||||||+++.+++++.+... +.+++|++|+++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~ra 79 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKA 79 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGG
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHH
Confidence 588899999999999999999999999999998 88899999999999999999999998776532 359999999999
Q ss_pred HHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCc
Q 015093 120 LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGF 199 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~ 199 (413)
|+.|+++.++++.. .+.++..++|+...... ....++|+|+||++|...+......+.++++||+||+|.+.+..+
T Consensus 80 La~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r 155 (720)
T 2zj8_A 80 LAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDR 155 (720)
T ss_dssp GHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTT
T ss_pred HHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcc
Confidence 99999999975543 48899999987654332 123579999999999998887666677899999999999988788
Q ss_pred HHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEE-----EeCc-----cccHHHH
Q 015093 200 KDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHV-----NVDK-----EEWKLDT 269 (413)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~ 269 (413)
...+..++..++++.+++++|||+++ ..++.. +++... +... ..+..+..... .... .......
T Consensus 156 ~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~---~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T 2zj8_A 156 GATLEVILAHMLGKAQIIGLSATIGN-PEELAE-WLNAEL-IVSD---WRPVKLRRGVFYQGFVTWEDGSIDRFSSWEEL 229 (720)
T ss_dssp HHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHH-HTTEEE-EECC---CCSSEEEEEEEETTEEEETTSCEEECSSTTHH
T ss_pred cHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHH-HhCCcc-cCCC---CCCCcceEEEEeCCeeeccccchhhhhHHHHH
Confidence 88888888887778999999999975 334444 333221 1111 11111111111 0111 1233444
Q ss_pred HHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhC---------------------------------CCeeEeecCCCCHH
Q 015093 270 LCDLYETLAITQSVIFVNTRRKVDWLTDQMRSR---------------------------------DHTVSATHGDMDQN 316 (413)
Q Consensus 270 l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~---------------------------------~~~~~~~~~~~~~~ 316 (413)
+.+.+. .++++||||++++.++.+++.|.+. ...+..+||++++.
T Consensus 230 ~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~ 307 (720)
T 2zj8_A 230 VYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRD 307 (720)
T ss_dssp HHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHH
T ss_pred HHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHH
Confidence 444443 4579999999999999999998753 12488999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE----cC----CCCChhHHHhhhcccCCCC--CcceEEEEeccc
Q 015093 317 SRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD----LPTQPENYLHRIGRSGRFG--RKGVAINFVTRD 386 (413)
Q Consensus 317 ~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~----~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~ 386 (413)
+|..+++.|++|..+|||||+++++|+|+|++++||+ ++ .|.|..+|.||+||+||.| .+|.|++++++.
T Consensus 308 ~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 387 (720)
T 2zj8_A 308 ERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSD 387 (720)
T ss_dssp HHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSS
T ss_pred HHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCc
Confidence 9999999999999999999999999999999999998 44 5889999999999999988 479999999988
Q ss_pred cHHHHHHHHHHhccccccCC
Q 015093 387 DDRMLADIQRFYNVVIEELP 406 (413)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~ 406 (413)
+.. ..+.+++....+++.
T Consensus 388 ~~~--~~~~~~~~~~~~~i~ 405 (720)
T 2zj8_A 388 DPR--EVMNHYIFGKPEKLF 405 (720)
T ss_dssp CHH--HHHHHHTTSCCCCCC
T ss_pred cHH--HHHHHHhcCCCCCcE
Confidence 732 234456654444443
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.9e-46 Score=373.62 Aligned_cols=350 Identities=18% Similarity=0.247 Sum_probs=267.9
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhh-hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
.+|+++++++.+.+.++..|+..|+++|.++++. +.+++++++++|||||||+++.+++++.+... +.+++|++|++
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r 85 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLR 85 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcH
Confidence 5689999999999999999999999999999999 78899999999999999999999998876532 35999999999
Q ss_pred HHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC
Q 015093 119 ELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG 198 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~ 198 (413)
+|+.|+.+.++++ ...+.++...+|+....... ...++|+|+||++|...+......+.++++||+||+|.+.+..
T Consensus 86 ~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~ 161 (715)
T 2va8_A 86 ALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPE 161 (715)
T ss_dssp HHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTT
T ss_pred HHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcc
Confidence 9999999999654 34588899999876543321 2367999999999999888766557789999999999988777
Q ss_pred cHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEE-----------EEeCc-----
Q 015093 199 FKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFH-----------VNVDK----- 262 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~----- 262 (413)
+...+..++.+++ +.+++++|||+++ ..++... ++.+. +.... .+..+.... .....
T Consensus 162 ~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~-l~~~~-~~~~~---r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (715)
T 2va8_A 162 RGPVVESVTIRAK-RRNLLALSATISN-YKQIAKW-LGAEP-VATNW---RPVPLIEGVIYPERKKKEYNVIFKDNTTKK 234 (715)
T ss_dssp THHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHH-HTCEE-EECCC---CSSCEEEEEEEECSSTTEEEEEETTSCEEE
T ss_pred cchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHH-hCCCc-cCCCC---CCCCceEEEEecCCcccceeeecCcchhhh
Confidence 8888888777776 7899999999975 3444443 33221 11111 111111111 10110
Q ss_pred ---cccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCC------------------------------------
Q 015093 263 ---EEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRD------------------------------------ 303 (413)
Q Consensus 263 ---~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~------------------------------------ 303 (413)
.......+...+. .++++||||++++.++.+++.|.+..
T Consensus 235 ~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 312 (715)
T 2va8_A 235 VHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLIS 312 (715)
T ss_dssp EESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHh
Confidence 1233444444443 45899999999999999999998642
Q ss_pred CeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE----cC-------CCCChhHHHhhhcccCC
Q 015093 304 HTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD-------LPTQPENYLHRIGRSGR 372 (413)
Q Consensus 304 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~-------~~~s~~~~~Q~~GR~~R 372 (413)
..+..+||+++..+|..+++.|++|..+|||||+++++|+|+|++++||+ ++ .|.|..+|.||+||+||
T Consensus 313 ~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR 392 (715)
T 2va8_A 313 KGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGR 392 (715)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCC
T ss_pred cCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCC
Confidence 24889999999999999999999999999999999999999999999998 77 78999999999999999
Q ss_pred CC--CcceEEEEeccccHHHHHHHHHHhccccccC
Q 015093 373 FG--RKGVAINFVTRDDDRMLADIQRFYNVVIEEL 405 (413)
Q Consensus 373 ~g--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (413)
.| .+|.|++++++.+. ....+.+++....+++
T Consensus 393 ~g~~~~G~~~~l~~~~~~-~~~~~~~~l~~~~e~~ 426 (715)
T 2va8_A 393 PGFDQIGESIVVVRDKED-VDRVFKKYVLSDVEPI 426 (715)
T ss_dssp TTTCSCEEEEEECSCGGG-HHHHHHHTTSSCCCCC
T ss_pred CCCCCCceEEEEeCCchH-HHHHHHHHHcCCCCCc
Confidence 87 47999999987763 1123344554444443
No 21
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=7.9e-47 Score=376.46 Aligned_cols=332 Identities=17% Similarity=0.243 Sum_probs=258.9
Q ss_pred CccCCC--CCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 41 SFDSMG--LKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 41 ~~~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
+|++++ +++.+.+.++..|+..|+++|.++++.+.+++++++++|||||||+++.+++++.+.. +.+++|++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r 78 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLR 78 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcH
Confidence 466777 8999999999999999999999999999999999999999999999999999887654 35999999999
Q ss_pred HHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC
Q 015093 119 ELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG 198 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~ 198 (413)
+|+.|+++.++++. ..+.++...+|+...... ....++|+|+||++|...+......+.++++||+||+|.+.+..
T Consensus 79 ~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 79 ALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp HHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCC
Confidence 99999999996543 458889999987764332 12367999999999999888866557789999999999988777
Q ss_pred cHHHHHHHHhhC---CCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEE-------EEeC-----cc
Q 015093 199 FKDQIYDIFQHL---PGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFH-------VNVD-----KE 263 (413)
Q Consensus 199 ~~~~~~~~~~~~---~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-----~~ 263 (413)
+...+..++..+ .++.+++++|||+++ ..++.. +++.+. +.... .+..+.... .... ..
T Consensus 155 r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~---r~~~l~~~~~~~~~~~~~~~~~~~~~~ 228 (702)
T 2p6r_A 155 RGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADY-YVSDW---RPVPLVEGVLCEGTLELFDGAFSTSRR 228 (702)
T ss_dssp THHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEE-EECCC---CSSCEEEEEECSSEEEEEETTEEEEEE
T ss_pred cccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCc-ccCCC---CCccceEEEeeCCeeeccCcchhhhhh
Confidence 776666665544 568999999999975 344444 444322 11111 111111111 0000 00
Q ss_pred ccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhC------------------------------CCeeEeecCCC
Q 015093 264 EWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSR------------------------------DHTVSATHGDM 313 (413)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~------------------------------~~~~~~~~~~~ 313 (413)
......+.+.+. .++++||||++++.++.+++.|.+. +..+..+||++
T Consensus 229 ~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l 306 (702)
T 2p6r_A 229 VKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGL 306 (702)
T ss_dssp CCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTS
T ss_pred hhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCC
Confidence 114445555443 4679999999999999999988752 13578899999
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE----cC---CCCChhHHHhhhcccCCCC--CcceEEEEec
Q 015093 314 DQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD---LPTQPENYLHRIGRSGRFG--RKGVAINFVT 384 (413)
Q Consensus 314 ~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~---~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~ 384 (413)
+..+|..+++.|++|+.+|||||+++++|+|+|++++||+ ++ .|.|..+|.||+||+||.| .+|.|+++++
T Consensus 307 ~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 386 (702)
T 2p6r_A 307 LNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVG 386 (702)
T ss_dssp CHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECC
T ss_pred CHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEec
Confidence 9999999999999999999999999999999999999998 44 6889999999999999988 4799999999
Q ss_pred ccc
Q 015093 385 RDD 387 (413)
Q Consensus 385 ~~~ 387 (413)
+.+
T Consensus 387 ~~~ 389 (702)
T 2p6r_A 387 KRD 389 (702)
T ss_dssp GGG
T ss_pred Ccc
Confidence 877
No 22
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.2e-46 Score=376.59 Aligned_cols=353 Identities=21% Similarity=0.248 Sum_probs=228.4
Q ss_pred HHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccC--ceeEEEEcccHHHHHHHHHHHH
Q 015093 52 LRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESL--QCQALVLAPTRELAQQIEKVMR 129 (413)
Q Consensus 52 ~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~--~~~~lvl~P~~~l~~q~~~~~~ 129 (413)
...+..+|+..|+++|.++++.++.|+++++++|||+|||+++++++++.+..... +.+++|++|+++|+.||.++++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999887755432 2589999999999999999999
Q ss_pred HhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCC-CCCCccEEEEccchhhhccCcH-HHHHHHH
Q 015093 130 ALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL-RPDYIRMFVLDEADEMLSRGFK-DQIYDIF 207 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~-~~~~~~~iIiDE~h~~~~~~~~-~~~~~~~ 207 (413)
+++...++++..++|+.............++|+|+||+.|.+.+..... .+..+++||+||||++.+.... ..+...+
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l 162 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYL 162 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred HHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHH
Confidence 9988788999999998765444444445689999999999999987766 6778999999999997654422 2222222
Q ss_pred hh-----CCCCceEEEEeeeCCh-------h-HHHHHH---------------------HhcCCCEEEEecCCcccc---
Q 015093 208 QH-----LPGKIQVGVFSATMPP-------E-ALEITR---------------------KFMNKPVRILVKRDELTL--- 250 (413)
Q Consensus 208 ~~-----~~~~~~~i~lSAT~~~-------~-~~~~~~---------------------~~~~~~~~~~~~~~~~~~--- 250 (413)
.. .+..+++++|||||.. . ...+.. .+...|............
T Consensus 163 ~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~f 242 (696)
T 2ykg_A 163 DQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKF 242 (696)
T ss_dssp HHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHH
T ss_pred HHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChH
Confidence 22 2456899999999961 1 111111 111122211110000000
Q ss_pred -------------------C------------------------------------------------------------
Q 015093 251 -------------------E------------------------------------------------------------ 251 (413)
Q Consensus 251 -------------------~------------------------------------------------------------ 251 (413)
.
T Consensus 243 s~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 322 (696)
T 2ykg_A 243 KYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDA 322 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHH
Confidence 0
Q ss_pred -----------------------------CceEEEE---------------EeCccccHHHHHHHHHHhc----CCCcEE
Q 015093 252 -----------------------------GIKQFHV---------------NVDKEEWKLDTLCDLYETL----AITQSV 283 (413)
Q Consensus 252 -----------------------------~~~~~~~---------------~~~~~~~~~~~l~~~~~~~----~~~~~l 283 (413)
.+.+.+. .......+...+..++... ..+++|
T Consensus 323 ~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~I 402 (696)
T 2ykg_A 323 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITI 402 (696)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEE
T ss_pred HhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEE
Confidence 0000000 0001234666677777655 567999
Q ss_pred EEEcCcccHHHHHHHHhhCC----CeeEee--------cCCCCHHHHHHHHHHHhc-CCCeEEEEeCccccCCCCCCCCE
Q 015093 284 IFVNTRRKVDWLTDQMRSRD----HTVSAT--------HGDMDQNSRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSL 350 (413)
Q Consensus 284 If~~~~~~a~~l~~~l~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~ 350 (413)
|||++++.++.+++.|++.+ +.+..+ |++++..+|.++++.|++ |+.+|||||+++++|+|+|++++
T Consensus 403 IF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~ 482 (696)
T 2ykg_A 403 LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNL 482 (696)
T ss_dssp EECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSE
T ss_pred EEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCE
Confidence 99999999999999999987 788888 559999999999999998 99999999999999999999999
Q ss_pred EEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHH----HHHhccccccCC
Q 015093 351 VINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI----QRFYNVVIEELP 406 (413)
Q Consensus 351 vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 406 (413)
||++++|+|...|.||+|| ||. ++|.|+++++..+......+ .++++.....++
T Consensus 483 VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 540 (696)
T 2ykg_A 483 VILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQ 540 (696)
T ss_dssp EEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999 998 78999999998877555544 444444444443
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.6e-46 Score=365.17 Aligned_cols=332 Identities=17% Similarity=0.205 Sum_probs=202.1
Q ss_pred CCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccC--ceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESL--QCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~--~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
+..+|+++|.++++.++.++++++.+|||+|||++++++++..+..... +.++||++|+++|+.||.+++++++...+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 3458999999999999999999999999999999999999887765432 55899999999999999999999998889
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCC-CCCCccEEEEccchhhhccCcHHHH-HHHHhh----C
Q 015093 137 VKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL-RPDYIRMFVLDEADEMLSRGFKDQI-YDIFQH----L 210 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~-~~~~~~~iIiDE~h~~~~~~~~~~~-~~~~~~----~ 210 (413)
+.+..++|+.............++|+|+||+.|.+.+..... .+..+++||+||||++.+......+ ...+.. .
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~ 163 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSA 163 (556)
T ss_dssp CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhccc
Confidence 999999998866555545555689999999999999988776 6888999999999998766543332 222222 1
Q ss_pred CCCceEEEEeeeCChh-----------HHHHHHHh------------------cCCCEEEEecCCccccCC---------
Q 015093 211 PGKIQVGVFSATMPPE-----------ALEITRKF------------------MNKPVRILVKRDELTLEG--------- 252 (413)
Q Consensus 211 ~~~~~~i~lSAT~~~~-----------~~~~~~~~------------------~~~~~~~~~~~~~~~~~~--------- 252 (413)
.+..+++++||||... ...+...+ ...+..............
T Consensus 164 ~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (556)
T 4a2p_A 164 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 243 (556)
T ss_dssp --CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHH
Confidence 3468899999999531 11111111 111111111000000000
Q ss_pred ------------ceEEEE--------------------------------------------------------------
Q 015093 253 ------------IKQFHV-------------------------------------------------------------- 258 (413)
Q Consensus 253 ------------~~~~~~-------------------------------------------------------------- 258 (413)
......
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (556)
T 4a2p_A 244 SETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 323 (556)
T ss_dssp HHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 000000
Q ss_pred ------------------------------------------EeCccccHHHHHHHHHHh----cCCCcEEEEEcCcccH
Q 015093 259 ------------------------------------------NVDKEEWKLDTLCDLYET----LAITQSVIFVNTRRKV 292 (413)
Q Consensus 259 ------------------------------------------~~~~~~~~~~~l~~~~~~----~~~~~~lIf~~~~~~a 292 (413)
.......+...+..++.. ...+++||||++++.+
T Consensus 324 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~ 403 (556)
T 4a2p_A 324 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 403 (556)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHH
Confidence 000012344455555543 4568999999999999
Q ss_pred HHHHHHHhhC------------CCeeEeecCCCCHHHHHHHHHHHhc-CCCeEEEEeCccccCCCCCCCCEEEEcCCCCC
Q 015093 293 DWLTDQMRSR------------DHTVSATHGDMDQNSRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 359 (413)
Q Consensus 293 ~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s 359 (413)
+.+++.|++. |.....+||+++..+|.++++.|++ |+.+|||||+++++|+|+|++++||++++|+|
T Consensus 404 ~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s 483 (556)
T 4a2p_A 404 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGN 483 (556)
T ss_dssp HHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCCSC
T ss_pred HHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCC
Confidence 9999999875 4555666788999999999999999 99999999999999999999999999999999
Q ss_pred hhHHHhhhcccCCCCCcceEEEEeccccHHHHH
Q 015093 360 PENYLHRIGRSGRFGRKGVAINFVTRDDDRMLA 392 (413)
Q Consensus 360 ~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 392 (413)
+..|.||+|| ||. ++|.++++++..+.....
T Consensus 484 ~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~ 514 (556)
T 4a2p_A 484 VTKMIQVRGR-GRA-AGSKCILVTSKTEVVENE 514 (556)
T ss_dssp HHHHHHC----------CCEEEEESCHHHHHHH
T ss_pred HHHHHHhcCC-CCC-CCceEEEEEeCcchHHHH
Confidence 9999999999 998 789999999987764433
No 24
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-45 Score=378.34 Aligned_cols=332 Identities=18% Similarity=0.215 Sum_probs=263.3
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
..|...++++.+...+...+...|+++|.++++.+..|+++++++|||||||+++.++++..+.. +.+++|++|+++
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~rvlvl~Ptra 238 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKA 238 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEESSHH
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEcCcHH
Confidence 45666777777766666666778999999999999999999999999999999999999887744 348999999999
Q ss_pred HHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCc
Q 015093 120 LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGF 199 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~ 199 (413)
|++|+++.+.++.. .+..++|+... ...++|+|+||+.|.+.+......+.++++||+||||++.+..+
T Consensus 239 La~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~r 307 (1108)
T 3l9o_A 239 LSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKER 307 (1108)
T ss_dssp HHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHH
T ss_pred HHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccch
Confidence 99999999998764 57778887762 34589999999999999988776677899999999999988888
Q ss_pred HHHHHHHHhhCCCCceEEEEeeeCChh--HHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCc---------c-----
Q 015093 200 KDQIYDIFQHLPGKIQVGVFSATMPPE--ALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDK---------E----- 263 (413)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~lSAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----- 263 (413)
...+..++..++...+++++|||+++. ...++......+..+...... +..+.++...... .
T Consensus 308 g~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~vd~~~~~~~ 385 (1108)
T 3l9o_A 308 GVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFRE 385 (1108)
T ss_dssp HHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC--SSCEEEEEEETTSSCCEEEEETTTEECH
T ss_pred HHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEeecCCcceeeeeccccchhh
Confidence 899999999999999999999998764 334555555555554433221 1222222211000 0
Q ss_pred ----------------------------------------ccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCC
Q 015093 264 ----------------------------------------EWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRD 303 (413)
Q Consensus 264 ----------------------------------------~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~ 303 (413)
...+..+...+.....+++||||++++.|+.++..|...+
T Consensus 386 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~ 465 (1108)
T 3l9o_A 386 ENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLD 465 (1108)
T ss_dssp HHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHH
T ss_pred hhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhcc
Confidence 1223334444555566799999999999999999986532
Q ss_pred Ce---------------------------------------eEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCC
Q 015093 304 HT---------------------------------------VSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGID 344 (413)
Q Consensus 304 ~~---------------------------------------~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d 344 (413)
+. +..+||++++.+|..+++.|++|.++|||||+++++|+|
T Consensus 466 ~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GID 545 (1108)
T 3l9o_A 466 FNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLN 545 (1108)
T ss_dssp HHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCC
T ss_pred CCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCC
Confidence 22 789999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCC--------CCChhHHHhhhcccCCCC--CcceEEEEecccc
Q 015093 345 VQQVSLVINYDL--------PTQPENYLHRIGRSGRFG--RKGVAINFVTRDD 387 (413)
Q Consensus 345 ~~~~~~vi~~~~--------~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~ 387 (413)
+|++++||+++. |.|..+|+||+||+||.| ..|.|++++.+..
T Consensus 546 iP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 546 MPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp C--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred CCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Confidence 999999997654 347778999999999999 6799999998763
No 25
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=3.5e-45 Score=357.19 Aligned_cols=331 Identities=20% Similarity=0.227 Sum_probs=229.4
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccC--ceeEEEEcccHHHHHHHHHHHHHhhcccCceE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESL--QCQALVLAPTRELAQQIEKVMRALGDYMGVKV 139 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~--~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~ 139 (413)
+|+++|.++++.++.++++++.+|||+|||++++++++..+..... +.++||++|+++|+.||.+++++++...++++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 7999999999999999999999999999999999999888765431 55899999999999999999999988889999
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCC-CCCCccEEEEccchhhhccCc-HHHHHHHHhhC-----CC
Q 015093 140 HACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL-RPDYIRMFVLDEADEMLSRGF-KDQIYDIFQHL-----PG 212 (413)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~-~~~~~~~iIiDE~h~~~~~~~-~~~~~~~~~~~-----~~ 212 (413)
..++|+............+++|+|+||+.|...+..... .+..+++||+||||++.+... ...+...+... ..
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDP 163 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSC
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCC
Confidence 999999866555444555689999999999999988766 677899999999999876542 23233333332 24
Q ss_pred CceEEEEeeeCChhH--------HHH--HHHhcCCCEEEEecC------CccccCCceEEEEE-----------------
Q 015093 213 KIQVGVFSATMPPEA--------LEI--TRKFMNKPVRILVKR------DELTLEGIKQFHVN----------------- 259 (413)
Q Consensus 213 ~~~~i~lSAT~~~~~--------~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~----------------- 259 (413)
..+++++||||.... ..+ ....+.......... .....+........
T Consensus 164 ~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (555)
T 3tbk_A 164 LPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKE 243 (555)
T ss_dssp CCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHH
T ss_pred CCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHHH
Confidence 578999999995421 111 111222111110000 00000010000000
Q ss_pred --------------------------------------------------------------------------------
Q 015093 260 -------------------------------------------------------------------------------- 259 (413)
Q Consensus 260 -------------------------------------------------------------------------------- 259 (413)
T Consensus 244 ~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 323 (555)
T 3tbk_A 244 TEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMT 323 (555)
T ss_dssp HHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence
Q ss_pred ------------------------------------------eCccccHHHHHHHHHHh----cCCCcEEEEEcCcccHH
Q 015093 260 ------------------------------------------VDKEEWKLDTLCDLYET----LAITQSVIFVNTRRKVD 293 (413)
Q Consensus 260 ------------------------------------------~~~~~~~~~~l~~~~~~----~~~~~~lIf~~~~~~a~ 293 (413)
......+...+..++.. ...+++||||++++.++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~ 403 (555)
T 3tbk_A 324 DALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVD 403 (555)
T ss_dssp HHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHH
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHH
Confidence 00012344455555544 35689999999999999
Q ss_pred HHHHHHhhCC------------CeeEeecCCCCHHHHHHHHHHHhc-CCCeEEEEeCccccCCCCCCCCEEEEcCCCCCh
Q 015093 294 WLTDQMRSRD------------HTVSATHGDMDQNSRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360 (413)
Q Consensus 294 ~l~~~l~~~~------------~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~ 360 (413)
.+++.|.+.+ .....+||+++..+|.++++.|++ |+.+|||||+++++|+|+|++++||++++|+|+
T Consensus 404 ~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~ 483 (555)
T 3tbk_A 404 ALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNV 483 (555)
T ss_dssp HHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSC
T ss_pred HHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCH
Confidence 9999998763 344455669999999999999999 999999999999999999999999999999999
Q ss_pred hHHHhhhcccCCCCCcceEEEEeccccHHHHHHH
Q 015093 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 361 ~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 394 (413)
..|+||+|| ||. ++|.+++++++.+......+
T Consensus 484 ~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 484 IKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred HHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999 898 88999999999877666555
No 26
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.4e-44 Score=347.49 Aligned_cols=324 Identities=20% Similarity=0.234 Sum_probs=250.9
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
+|+++|.++++.+..+ ++++.+|||+|||++++.++...+. ..+.++||++|+++|+.||.+++.++....+..+..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 7999999999999999 9999999999999999998887765 334589999999999999999999987444558888
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEee
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSA 221 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (413)
++|+.......... ..++|+|+||+.|...+.........+++||+||||++.+......+...+....+..+++++||
T Consensus 86 ~~g~~~~~~~~~~~-~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTa 164 (494)
T 1wp9_A 86 LTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTA 164 (494)
T ss_dssp ECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEES
T ss_pred eeCCcchhhhhhhc-cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEec
Confidence 88887765443333 35799999999999998887777888999999999998765445555555555566788999999
Q ss_pred eCChhHHH---HHHHhcCCCEEEEecCCcc-----ccCCceEEEEEe---------------------------------
Q 015093 222 TMPPEALE---ITRKFMNKPVRILVKRDEL-----TLEGIKQFHVNV--------------------------------- 260 (413)
Q Consensus 222 T~~~~~~~---~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--------------------------------- 260 (413)
||..+... ....+.............. ............
T Consensus 165 Tp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (494)
T 1wp9_A 165 SPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSP 244 (494)
T ss_dssp CSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCT
T ss_pred CCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 99744322 3332222221111110000 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 015093 261 -------------------------------------------------------------------------------- 260 (413)
Q Consensus 261 -------------------------------------------------------------------------------- 260 (413)
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (494)
T 1wp9_A 245 DIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKR 324 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHH
T ss_pred CcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHH
Confidence
Q ss_pred --------------CccccHHHHHHHHHHh----cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecC--------CCC
Q 015093 261 --------------DKEEWKLDTLCDLYET----LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHG--------DMD 314 (413)
Q Consensus 261 --------------~~~~~~~~~l~~~~~~----~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~--------~~~ 314 (413)
.....+...+.+++.. ..++++||||++++.++.+++.|++.++.+..+|| +++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~ 404 (494)
T 1wp9_A 325 MKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLS 404 (494)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCC
Confidence 0122345556666655 46789999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 315 QNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 315 ~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
..+|.++++.|++|+.+|||+|+++++|+|+|.+++||++++|+++..|.||+||+||.|+ |.++.++++.+.+.
T Consensus 405 ~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 405 QREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDE 479 (494)
T ss_dssp CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHH
T ss_pred HHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 99999999887654
No 27
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-44 Score=362.71 Aligned_cols=320 Identities=19% Similarity=0.265 Sum_probs=255.8
Q ss_pred HHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcc
Q 015093 55 IYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 55 l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~ 134 (413)
...++| +|+++|.++++.+.+++++++++|||||||+++.++++..+.. +.+++|++|+++|++|+++++.++..
T Consensus 80 ~~~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---g~rvL~l~PtkaLa~Q~~~~l~~~~~- 154 (1010)
T 2xgj_A 80 ARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG- 154 (1010)
T ss_dssp SCCCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHHS-
T ss_pred HHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---CCeEEEECChHHHHHHHHHHHHHHhC-
Confidence 344566 5999999999999999999999999999999999888877643 35999999999999999999998764
Q ss_pred cCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCc
Q 015093 135 MGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKI 214 (413)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~ 214 (413)
.+..++|+.... ..++|+|+||+.|.+.+......+.++++||+||+|.+.+..+...+..++..++...
T Consensus 155 ---~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~ 224 (1010)
T 2xgj_A 155 ---DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 224 (1010)
T ss_dssp ---CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTC
T ss_pred ---CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCC
Confidence 677888877632 3578999999999998888777788899999999999988888888999999999999
Q ss_pred eEEEEeeeCChhHH--HHHHHhcCCCEEEEecCCccccCCceEEEEEeC---------cc--------------------
Q 015093 215 QVGVFSATMPPEAL--EITRKFMNKPVRILVKRDELTLEGIKQFHVNVD---------KE-------------------- 263 (413)
Q Consensus 215 ~~i~lSAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-------------------- 263 (413)
+++++|||+++... ..+....+.+..+..... .+..+.++..... ..
T Consensus 225 ~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~--rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (1010)
T 2xgj_A 225 RYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF--RPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIG 302 (1010)
T ss_dssp EEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECC--CSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC----
T ss_pred eEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC--CcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhc
Confidence 99999999976432 233333344554443322 1222222222100 00
Q ss_pred -------------------------ccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCe-------------
Q 015093 264 -------------------------EWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHT------------- 305 (413)
Q Consensus 264 -------------------------~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~------------- 305 (413)
...+..+...+......++||||+++..++.+++.|...++.
T Consensus 303 ~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~ 382 (1010)
T 2xgj_A 303 DDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFN 382 (1010)
T ss_dssp --------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 122334455555556679999999999999999999875442
Q ss_pred --------------------------eEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE----cC
Q 015093 306 --------------------------VSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD 355 (413)
Q Consensus 306 --------------------------~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~ 355 (413)
+..+||++++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ ++
T Consensus 383 ~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd 462 (1010)
T 2xgj_A 383 NAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWD 462 (1010)
T ss_dssp HHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEEC
T ss_pred HHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccC
Confidence 788999999999999999999999999999999999999999999998 88
Q ss_pred C----CCChhHHHhhhcccCCCCC--cceEEEEeccc-cHHHH
Q 015093 356 L----PTQPENYLHRIGRSGRFGR--KGVAINFVTRD-DDRML 391 (413)
Q Consensus 356 ~----~~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~-~~~~~ 391 (413)
. |.|+.+|.||+||+||.|. .|.|++++++. +...+
T Consensus 463 ~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~ 505 (1010)
T 2xgj_A 463 GQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVA 505 (1010)
T ss_dssp SSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHH
T ss_pred CcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHH
Confidence 7 8899999999999999996 59999999876 43333
No 28
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.2e-44 Score=365.07 Aligned_cols=335 Identities=18% Similarity=0.216 Sum_probs=209.9
Q ss_pred HhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccC--ceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 56 YAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESL--QCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 56 ~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~--~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
..+|+..|+++|.++++.+..++++++++|||+|||++++++++..+..... +.++||++|+++|+.||.+.+++++.
T Consensus 242 ~~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred hhcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 3457889999999999999999999999999999999999999888765431 55899999999999999999999998
Q ss_pred ccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCC-CCCCccEEEEccchhhhccCcHHH-HHHHHhh--
Q 015093 134 YMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL-RPDYIRMFVLDEADEMLSRGFKDQ-IYDIFQH-- 209 (413)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~-~~~~~~~iIiDE~h~~~~~~~~~~-~~~~~~~-- 209 (413)
..++++..++|+............+++|+|+||+.|.+.+..... .+.++++||+||||++.+...... +...+..
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (797)
T ss_dssp GGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhh
Confidence 889999999999876655555556789999999999999987766 677899999999999876543322 2233322
Q ss_pred --CCCCceEEEEeeeCCh-----------hHHHHHH------------------HhcCCCEEEEecCCccccCC------
Q 015093 210 --LPGKIQVGVFSATMPP-----------EALEITR------------------KFMNKPVRILVKRDELTLEG------ 252 (413)
Q Consensus 210 --~~~~~~~i~lSAT~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~------ 252 (413)
..+..+++++||||.. ....+.. .+...+..............
T Consensus 402 ~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (797)
T 4a2q_A 402 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (797)
T ss_dssp TTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHH
Confidence 1456889999999952 1111111 11111111111000000000
Q ss_pred ------------------ceEEEEE-e-----------------------------------------------------
Q 015093 253 ------------------IKQFHVN-V----------------------------------------------------- 260 (413)
Q Consensus 253 ------------------~~~~~~~-~----------------------------------------------------- 260 (413)
+...... .
T Consensus 482 ~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 561 (797)
T 4a2q_A 482 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (797)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 0000000 0
Q ss_pred -----------------------------------------------CccccHHHHHHHHHHh----cCCCcEEEEEcCc
Q 015093 261 -----------------------------------------------DKEEWKLDTLCDLYET----LAITQSVIFVNTR 289 (413)
Q Consensus 261 -----------------------------------------------~~~~~~~~~l~~~~~~----~~~~~~lIf~~~~ 289 (413)
.....+...+..++.. ..++++||||+++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~ 641 (797)
T 4a2q_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (797)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSH
T ss_pred ccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcH
Confidence 0012244445555544 4668999999999
Q ss_pred ccHHHHHHHHhhC------------CCeeEeecCCCCHHHHHHHHHHHhc-CCCeEEEEeCccccCCCCCCCCEEEEcCC
Q 015093 290 RKVDWLTDQMRSR------------DHTVSATHGDMDQNSRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 290 ~~a~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 356 (413)
+.++.+++.|++. |.....+||+++..+|.++++.|++ |+.+|||||+++++|+|+|++++||++++
T Consensus 642 ~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 642 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 721 (797)
T ss_dssp HHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESC
T ss_pred HHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCC
Confidence 9999999999873 4566677888999999999999999 99999999999999999999999999999
Q ss_pred CCChhHHHhhhcccCCCCCcceEEEEeccccHHHHH
Q 015093 357 PTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLA 392 (413)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 392 (413)
|+|+..|+||+|| ||. ++|.|+++++..+.....
T Consensus 722 p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee~~ 755 (797)
T 4a2q_A 722 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVENE 755 (797)
T ss_dssp CSCHHHHHTC---------CCCEEEEECCHHHHHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHHHH
Confidence 9999999999999 998 889999999987665433
No 29
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.4e-43 Score=360.63 Aligned_cols=336 Identities=18% Similarity=0.211 Sum_probs=208.5
Q ss_pred HHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccC--ceeEEEEcccHHHHHHHHHHHHH
Q 015093 53 RGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESL--QCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 53 ~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~--~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
....-.++..|+++|.++++.++.|+++++.+|||+|||++++++++..+..... +.++||++|+++|+.||.+++++
T Consensus 239 ~~~~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 239 KPPPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp ---------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CcccccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 3333456779999999999999999999999999999999999999888765431 45899999999999999999999
Q ss_pred hhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCC-CCCCccEEEEccchhhhccCcH-HHHHHHHh
Q 015093 131 LGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL-RPDYIRMFVLDEADEMLSRGFK-DQIYDIFQ 208 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~-~~~~~~~iIiDE~h~~~~~~~~-~~~~~~~~ 208 (413)
++...++++..++|+.............++|+|+||+.|.+.+..... .+.++++||+||||++.+.... ..+...+.
T Consensus 319 ~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~ 398 (936)
T 4a2w_A 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (936)
T ss_dssp HHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred HhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHH
Confidence 988888999999998865544444445689999999999999987666 6777999999999998765432 22223332
Q ss_pred h----CCCCceEEEEeeeCCh-----------hHHHHH------------------HHhcCCCEEEEecCCccccCC---
Q 015093 209 H----LPGKIQVGVFSATMPP-----------EALEIT------------------RKFMNKPVRILVKRDELTLEG--- 252 (413)
Q Consensus 209 ~----~~~~~~~i~lSAT~~~-----------~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~--- 252 (413)
. ..+..+++++||||.. .+..+. ..+...+..............
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 478 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHH
Confidence 2 2456889999999952 111111 111122221111111000000
Q ss_pred ---------------------ceEEEEE----------------------------------------------------
Q 015093 253 ---------------------IKQFHVN---------------------------------------------------- 259 (413)
Q Consensus 253 ---------------------~~~~~~~---------------------------------------------------- 259 (413)
+......
T Consensus 479 ~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i 558 (936)
T 4a2w_A 479 IISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (936)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000000
Q ss_pred -------------------------------------------------eCccccHHHHHHHHHHh----cCCCcEEEEE
Q 015093 260 -------------------------------------------------VDKEEWKLDTLCDLYET----LAITQSVIFV 286 (413)
Q Consensus 260 -------------------------------------------------~~~~~~~~~~l~~~~~~----~~~~~~lIf~ 286 (413)
......+...+..++.. ..++++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~ 638 (936)
T 4a2w_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (936)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEE
T ss_pred hcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEe
Confidence 00012244445555554 3467999999
Q ss_pred cCcccHHHHHHHHhhC------------CCeeEeecCCCCHHHHHHHHHHHhc-CCCeEEEEeCccccCCCCCCCCEEEE
Q 015093 287 NTRRKVDWLTDQMRSR------------DHTVSATHGDMDQNSRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVIN 353 (413)
Q Consensus 287 ~~~~~a~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~ 353 (413)
++++.++.+++.|.+. |.....+||+++..+|.++++.|++ |+.+|||||+++++|+|+|.+++||+
T Consensus 639 ~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~ 718 (936)
T 4a2w_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 718 (936)
T ss_dssp SSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEE
T ss_pred CCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE
Confidence 9999999999999986 5556667888999999999999999 99999999999999999999999999
Q ss_pred cCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 354 YDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 354 ~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
+++|+|+..|+||+|| ||. +.|.++++++..+...
T Consensus 719 yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ee 753 (936)
T 4a2w_A 719 YEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (936)
T ss_dssp ESCCSCSHHHHCC---------CCCEEEEESCHHHHH
T ss_pred eCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHHH
Confidence 9999999999999999 998 7899999998876643
No 30
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=3.6e-43 Score=360.08 Aligned_cols=321 Identities=19% Similarity=0.243 Sum_probs=253.0
Q ss_pred hCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 57 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
..++ +|+++|.++++.++.|+++++++|||||||++++.+++..+. .+.+++|++|+++|+.|+.+.+++++ ..+
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~---~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~ 148 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLERLQKLA-DEK 148 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHHHHTTS-CTT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh---cCCeEEEEechHHHHHHHHHHHHHhh-CCC
Confidence 4677 799999999999999999999999999999998888877663 34589999999999999999999977 678
Q ss_pred ceEEEEECCcch---HHHHHHHhc-CCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc-----------cCcHH
Q 015093 137 VKVHACVGGTSV---REDQRILSA-GVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS-----------RGFKD 201 (413)
Q Consensus 137 ~~~~~~~~~~~~---~~~~~~~~~-~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~-----------~~~~~ 201 (413)
+++..++|+... ......+.. .++|+|+||+.|.+++.. ..+.++++||+||||++.. .++..
T Consensus 149 i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~ 226 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPE 226 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCH
T ss_pred CeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCH
Confidence 899999999876 344444444 489999999999877664 4456789999999997654 44555
Q ss_pred H-HHHHHhhCC-----------CCceEEEEeeeC-ChhHH-HHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHH
Q 015093 202 Q-IYDIFQHLP-----------GKIQVGVFSATM-PPEAL-EITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKL 267 (413)
Q Consensus 202 ~-~~~~~~~~~-----------~~~~~i~lSAT~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (413)
. +..++..++ ...+++++|||+ +.... ........ +...........+.+.+... .+.
T Consensus 227 ~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~----~k~ 298 (1104)
T 4ddu_A 227 EIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS----RSK 298 (1104)
T ss_dssp HHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC----CCH
T ss_pred HHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec----CHH
Confidence 5 677777665 788999999994 33322 22333333 22222333445555555444 355
Q ss_pred HHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeE-eecCCCCHHHHHHHHHHHhcCCCeEEEE----eCccccC
Q 015093 268 DTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVS-ATHGDMDQNSRDIIMREFRSGSSRVLIT----TDLLARG 342 (413)
Q Consensus 268 ~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~vli~----t~~~~~G 342 (413)
..+..+++.. ++++||||++++.++.+++.|++.++.+. .+||. |.+ ++.|++|+.+|||| |+++++|
T Consensus 299 ~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarG 371 (1104)
T 4ddu_A 299 EKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRG 371 (1104)
T ss_dssp HHHHHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCS
T ss_pred HHHHHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEec
Confidence 5666777663 48999999999999999999999999998 99982 555 99999999999999 9999999
Q ss_pred CCCCC-CCEEEEcCCCC---------------------------------------------------------------
Q 015093 343 IDVQQ-VSLVINYDLPT--------------------------------------------------------------- 358 (413)
Q Consensus 343 ~d~~~-~~~vi~~~~~~--------------------------------------------------------------- 358 (413)
+|+|+ +++||+++.|.
T Consensus 372 IDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~ 451 (1104)
T 4ddu_A 372 VDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVK 451 (1104)
T ss_dssp CCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEE
T ss_pred CcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEec
Confidence 99999 99999999998
Q ss_pred ---------ChhHHHhhhcccCCCCCc--ceEEEEeccccHHHHHHHHHHhc
Q 015093 359 ---------QPENYLHRIGRSGRFGRK--GVAINFVTRDDDRMLADIQRFYN 399 (413)
Q Consensus 359 ---------s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~~~~~~~~~~~~~~ 399 (413)
+...|+||+||+||.|.. +.++.++...|...++.+.+.+.
T Consensus 452 ~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 452 DEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp TTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred CCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 777999999999996543 24455555578888888888876
No 31
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.9e-42 Score=351.98 Aligned_cols=320 Identities=17% Similarity=0.236 Sum_probs=249.3
Q ss_pred CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
++| +|+++|.++++.+.+|+++++.+|||||||+++++++...+.. +.+++|++|+++|+.|+++.++++.. +.
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---g~~vlvl~PtraLa~Q~~~~l~~~~~--~~ 109 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---MTKTIYTSPIKALSNQKFRDFKETFD--DV 109 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHTTC----C
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHHcC--CC
Confidence 444 5999999999999999999999999999999998888776533 45899999999999999999988654 67
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEE
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVG 217 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i 217 (413)
.+..++|+... ....+|+|+||+.|.+.+......+.++++||+||||.+.++++...+..++..++...+++
T Consensus 110 ~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iI 182 (997)
T 4a4z_A 110 NIGLITGDVQI-------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFI 182 (997)
T ss_dssp CEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEE
T ss_pred eEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEE
Confidence 88888888753 23579999999999999888777778899999999999988888888889999999999999
Q ss_pred EEeeeCChhHHHHHHHhc---CCCEEEEecCCccccCCceEEEE------------------------------------
Q 015093 218 VFSATMPPEALEITRKFM---NKPVRILVKRDELTLEGIKQFHV------------------------------------ 258 (413)
Q Consensus 218 ~lSAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 258 (413)
++|||+++.. ++..++. .....+..... .+..+.....
T Consensus 183 lLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~--r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 259 (997)
T 4a4z_A 183 LLSATVPNTY-EFANWIGRTKQKNIYVISTPK--RPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAP 259 (997)
T ss_dssp EEECCCTTHH-HHHHHHHHHHTCCEEEEECSS--CSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--------
T ss_pred EEcCCCCChH-HHHHHHhcccCCceEEEecCC--CCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccc
Confidence 9999997543 3333322 12222221111 1111111110
Q ss_pred --------------------------------------------------------EeCccccHHHHHHHHHHhcCCCcE
Q 015093 259 --------------------------------------------------------NVDKEEWKLDTLCDLYETLAITQS 282 (413)
Q Consensus 259 --------------------------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~ 282 (413)
...........+...+.....+++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~ 339 (997)
T 4a4z_A 260 SKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPM 339 (997)
T ss_dssp ---------------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCE
Confidence 000122345667777777777899
Q ss_pred EEEEcCcccHHHHHHHHhhCCC---------------------------------------eeEeecCCCCHHHHHHHHH
Q 015093 283 VIFVNTRRKVDWLTDQMRSRDH---------------------------------------TVSATHGDMDQNSRDIIMR 323 (413)
Q Consensus 283 lIf~~~~~~a~~l~~~l~~~~~---------------------------------------~~~~~~~~~~~~~r~~~~~ 323 (413)
||||++++.++.+++.|.+.++ .+..+||++++.+|..+++
T Consensus 340 IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~ 419 (997)
T 4a4z_A 340 VVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 419 (997)
T ss_dssp EEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHH
Confidence 9999999999999999987655 4789999999999999999
Q ss_pred HHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCC---------ChhHHHhhhcccCCCC--CcceEEEEec--cccHHH
Q 015093 324 EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT---------QPENYLHRIGRSGRFG--RKGVAINFVT--RDDDRM 390 (413)
Q Consensus 324 ~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~---------s~~~~~Q~~GR~~R~g--~~g~~~~~~~--~~~~~~ 390 (413)
.|.+|..+|||||+++++|+|+|+ ..||+.+.+. |..+|.|++||+||.| ..|.|++++. ..+...
T Consensus 420 ~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~ 498 (997)
T 4a4z_A 420 LFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIAT 498 (997)
T ss_dssp HHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHH
T ss_pred HHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHH
Confidence 999999999999999999999999 6666655554 9999999999999998 5688888884 234444
Q ss_pred HHHH
Q 015093 391 LADI 394 (413)
Q Consensus 391 ~~~~ 394 (413)
+..+
T Consensus 499 ~~~~ 502 (997)
T 4a4z_A 499 FKEV 502 (997)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 32
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=6.1e-43 Score=349.84 Aligned_cols=322 Identities=17% Similarity=0.231 Sum_probs=221.1
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccC---ceeEEEEcccHHHHHHH-HHHHHHhhcccCc
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESL---QCQALVLAPTRELAQQI-EKVMRALGDYMGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~---~~~~lvl~P~~~l~~q~-~~~~~~~~~~~~~ 137 (413)
+|+++|.++++.++.|+++++.+|||+|||++++++++..+..... +.++||++|+++|+.|| .+++++++.. ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 7999999999999999999999999999999999999887755432 25899999999999999 9999998764 47
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHH------HcCCCCCCCccEEEEccchhhhccC-cHHHHHHHHhhC
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDML------RRQSLRPDYIRMFVLDEADEMLSRG-FKDQIYDIFQHL 210 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~------~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~~ 210 (413)
.+..++|+..............+|+|+||+.|.+.+ ....+.+..+++||+||||++.... +...+...+...
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~ 165 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 165 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHH
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhh
Confidence 888888887655444444567899999999999887 3444667779999999999875432 222222222211
Q ss_pred -------------CCCceEEEEeeeCChh-----------HHHHHHHhc------------------CCCEEEEecCCcc
Q 015093 211 -------------PGKIQVGVFSATMPPE-----------ALEITRKFM------------------NKPVRILVKRDEL 248 (413)
Q Consensus 211 -------------~~~~~~i~lSAT~~~~-----------~~~~~~~~~------------------~~~~~~~~~~~~~ 248 (413)
.+.++++++||||... .......+. ..+..........
T Consensus 166 ~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~ 245 (699)
T 4gl2_A 166 LKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADAT 245 (699)
T ss_dssp HHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC--
T ss_pred hcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccc
Confidence 1467899999999862 111111111 1111111000000
Q ss_pred ccCC-----------------c---eE-----------------------------------------------------
Q 015093 249 TLEG-----------------I---KQ----------------------------------------------------- 255 (413)
Q Consensus 249 ~~~~-----------------~---~~----------------------------------------------------- 255 (413)
.... + ..
T Consensus 246 ~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (699)
T 4gl2_A 246 REDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTH 325 (699)
T ss_dssp ---CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 00
Q ss_pred ---------------------EEEEeCc-------------------------cccHHHHHHHHH----HhcC-CCcEEE
Q 015093 256 ---------------------FHVNVDK-------------------------EEWKLDTLCDLY----ETLA-ITQSVI 284 (413)
Q Consensus 256 ---------------------~~~~~~~-------------------------~~~~~~~l~~~~----~~~~-~~~~lI 284 (413)
....... ...+...+..++ .... .+++||
T Consensus 326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IV 405 (699)
T 4gl2_A 326 LETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGII 405 (699)
T ss_dssp HHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEE
T ss_pred HHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 0000000 001111122222 2223 789999
Q ss_pred EEcCcccHHHHHHHHhhC------CCeeEeecCC--------CCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCE
Q 015093 285 FVNTRRKVDWLTDQMRSR------DHTVSATHGD--------MDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 350 (413)
Q Consensus 285 f~~~~~~a~~l~~~l~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~ 350 (413)
||++++.++.+++.|++. |+.+..+||+ ++..+|.++++.|++|+.+|||||+++++|+|+|++++
T Consensus 406 F~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~ 485 (699)
T 4gl2_A 406 FTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNI 485 (699)
T ss_dssp ECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCC
T ss_pred EECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCE
Confidence 999999999999999987 8999999999 99999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 351 VINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 351 vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
||++++|+|+..|.||+||+||.| +.++++....
T Consensus 486 VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~ 519 (699)
T 4gl2_A 486 VIRYGLVTNEIAMVQARGRARADE--STYVLVAHSG 519 (699)
T ss_dssp CEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESS
T ss_pred EEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCC
Confidence 999999999999999999986654 3444444433
No 33
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=6e-43 Score=358.76 Aligned_cols=322 Identities=19% Similarity=0.270 Sum_probs=252.3
Q ss_pred HHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcc
Q 015093 55 IYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 55 l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~ 134 (413)
++.+|+. | ++|.++++.++.|+++++++|||||||+ +.++++..+.. .+++++|++|+++|+.|+.+.+++++..
T Consensus 51 ~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--~~~~~lil~PtreLa~Q~~~~l~~l~~~ 125 (1054)
T 1gku_B 51 RKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--KGKRCYVIFPTSLLVIQAAETIRKYAEK 125 (1054)
T ss_dssp HTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--TSCCEEEEESCHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--cCCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 3458998 9 9999999999999999999999999998 66666665543 2458999999999999999999999988
Q ss_pred cCc----eEEEEECCcchHHH---HHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHH
Q 015093 135 MGV----KVHACVGGTSVRED---QRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIF 207 (413)
Q Consensus 135 ~~~----~~~~~~~~~~~~~~---~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~ 207 (413)
.++ .+..++|+.....+ ...+.. ++|+|+||+.|.+.+.. +.++++||+||||++.+ +...+..++
T Consensus 126 ~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~~i~ 198 (1054)
T 1gku_B 126 AGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVDKLL 198 (1054)
T ss_dssp TCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHHHHH
T ss_pred cCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHHHHH
Confidence 888 89999998876653 222344 89999999999987665 45789999999999877 456677777
Q ss_pred hhCC-----------CCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHh
Q 015093 208 QHLP-----------GKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET 276 (413)
Q Consensus 208 ~~~~-----------~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (413)
..+. ...+++++|||+++. ......++..+..+...........+.+.+.. ..+...+..+++.
T Consensus 199 ~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~----~~k~~~L~~ll~~ 273 (1054)
T 1gku_B 199 HLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVN----DESISTLSSILEK 273 (1054)
T ss_dssp HHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEES----CCCTTTTHHHHTT
T ss_pred HHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEec----hhHHHHHHHHHhh
Confidence 6663 457789999999876 32222222222222223333334455555442 3345556666666
Q ss_pred cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEE----eCccccCCCCCCC-CEE
Q 015093 277 LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLIT----TDLLARGIDVQQV-SLV 351 (413)
Q Consensus 277 ~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~----t~~~~~G~d~~~~-~~v 351 (413)
. ++++||||++++.++.+++.|++. +.+..+||++ .++++.|++|+.+|||| |+++++|+|+|++ ++|
T Consensus 274 ~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~V 346 (1054)
T 1gku_B 274 L-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFA 346 (1054)
T ss_dssp S-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEE
T ss_pred c-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEE
Confidence 5 478999999999999999999988 9999999997 47789999999999999 8999999999995 999
Q ss_pred EEcCCC-----------------------------------------------------------------------CCh
Q 015093 352 INYDLP-----------------------------------------------------------------------TQP 360 (413)
Q Consensus 352 i~~~~~-----------------------------------------------------------------------~s~ 360 (413)
|+++.| .|.
T Consensus 347 I~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 426 (1054)
T 1gku_B 347 VFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDL 426 (1054)
T ss_dssp EEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECH
T ss_pred EEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcH
Confidence 999999 789
Q ss_pred hHHHhhhcccCCCCCcc--eEEEEeccccHHHHHHHHHHhcc
Q 015093 361 ENYLHRIGRSGRFGRKG--VAINFVTRDDDRMLADIQRFYNV 400 (413)
Q Consensus 361 ~~~~Q~~GR~~R~g~~g--~~~~~~~~~~~~~~~~~~~~~~~ 400 (413)
..|+||+||+||.|+.| .+++++...+...+..+.+.+..
T Consensus 427 ~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 427 RTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 99999999999987765 48888888888899999888875
No 34
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.2e-42 Score=340.98 Aligned_cols=322 Identities=18% Similarity=0.232 Sum_probs=240.7
Q ss_pred CHHHHHHHHhCCCCCCcHHHHhhhhhhhCC------CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHH
Q 015093 48 KENLLRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELA 121 (413)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~ 121 (413)
.+.+.+.+..++| +|+++|.++++.+.++ .++++++|||||||++++++++..+.. +.+++|++|+++|+
T Consensus 355 ~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~qvlvlaPtr~La 430 (780)
T 1gm5_A 355 GKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GFQTAFMVPTSILA 430 (780)
T ss_dssp THHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TSCEEEECSCHHHH
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHH
Confidence 3566677788999 9999999999998775 589999999999999999999987754 34899999999999
Q ss_pred HHHHHHHHHhhcccCceEEEEECCcchHHHHHH----HhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc
Q 015093 122 QQIEKVMRALGDYMGVKVHACVGGTSVREDQRI----LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR 197 (413)
Q Consensus 122 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~ 197 (413)
.|+++.++++....++++..++|+......... ....++|+|+||+.+.. ...+.++++||+||+|++...
T Consensus 431 ~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~ 505 (780)
T 1gm5_A 431 IQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVK 505 (780)
T ss_dssp HHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC---
T ss_pred HHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHH
Confidence 999999999998888999999999876554322 23468999999987743 345677899999999986322
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHh-
Q 015093 198 GFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET- 276 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 276 (413)
. ...+......+++++|||||.+...... .++................+.... .. ......+...+..
T Consensus 506 q-----r~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~r~~i~~~~---~~-~~~~~~l~~~i~~~ 574 (780)
T 1gm5_A 506 Q-----REALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPGRKEVQTML---VP-MDRVNEVYEFVRQE 574 (780)
T ss_dssp -------CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSSCCCCEECC---CC-SSTHHHHHHHHHHH
T ss_pred H-----HHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCCCcceEEEE---ec-cchHHHHHHHHHHH
Confidence 1 1122223346889999999977654332 233321111111111111222111 11 1223334444432
Q ss_pred c-CCCcEEEEEcCcc--------cHHHHHHHHhh---CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCC
Q 015093 277 L-AITQSVIFVNTRR--------KVDWLTDQMRS---RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGID 344 (413)
Q Consensus 277 ~-~~~~~lIf~~~~~--------~a~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d 344 (413)
. .+++++|||+..+ .++.+++.|++ .+..+..+||+++..+|+++++.|++|+.+|||||+++++|+|
T Consensus 575 l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GID 654 (780)
T 1gm5_A 575 VMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGID 654 (780)
T ss_dssp TTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSC
T ss_pred HhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCcccc
Confidence 2 4578999999764 47888899988 4678999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCC-ChhHHHhhhcccCCCCCcceEEEEeccccHH
Q 015093 345 VQQVSLVINYDLPT-QPENYLHRIGRSGRFGRKGVAINFVTRDDDR 389 (413)
Q Consensus 345 ~~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 389 (413)
+|++++||+++.|. +...+.|++||+||.|++|.|++++++.+..
T Consensus 655 iP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 655 VPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE 700 (780)
T ss_dssp CTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH
T ss_pred CCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH
Confidence 99999999999985 7889999999999999999999999854433
No 35
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7e-41 Score=354.50 Aligned_cols=341 Identities=16% Similarity=0.201 Sum_probs=259.3
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhhhhhhhC-CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHH
Q 015093 46 GLKENLLRGIYAYGFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQI 124 (413)
Q Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~ 124 (413)
.+.....+.+...+|..++|+|+++++.+.. ++++++++|||||||+++.++++..+.... +.+++|++|+++|++|.
T Consensus 910 ~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~-~~kavyi~P~raLa~q~ 988 (1724)
T 4f92_B 910 ALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-EGRCVYITPMEALAEQV 988 (1724)
T ss_dssp GSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-TCCEEEECSCHHHHHHH
T ss_pred cccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-CCEEEEEcChHHHHHHH
Confidence 3556777888888999999999999999865 567999999999999999999999886654 44899999999999999
Q ss_pred HHHHHH-hhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCC--CCCCccEEEEccchhhhccCcHH
Q 015093 125 EKVMRA-LGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL--RPDYIRMFVLDEADEMLSRGFKD 201 (413)
Q Consensus 125 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~--~~~~~~~iIiDE~h~~~~~~~~~ 201 (413)
++++++ +....+.++..++|+...... . ...++|+|+||+++..++++... .++++++||+||+|.+.+. .+.
T Consensus 989 ~~~~~~~f~~~~g~~V~~ltGd~~~~~~--~-~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg~ 1064 (1724)
T 4f92_B 989 YMDWYEKFQDRLNKKVVLLTGETSTDLK--L-LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGP 1064 (1724)
T ss_dssp HHHHHHHHTTTSCCCEEECCSCHHHHHH--H-HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-THH
T ss_pred HHHHHHHhchhcCCEEEEEECCCCcchh--h-cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CCc
Confidence 999865 556678999999998764332 2 23479999999999877765433 2567899999999987653 454
Q ss_pred HHHHHH-------hhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccH------HH
Q 015093 202 QIYDIF-------QHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWK------LD 268 (413)
Q Consensus 202 ~~~~~~-------~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 268 (413)
.+..++ ...+.+.|+|++|||.++ ..++..++..............++..+.......+..... ..
T Consensus 1065 ~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~ 1143 (1724)
T 4f92_B 1065 VLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAK 1143 (1724)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHH
T ss_pred cHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcc
Confidence 444433 345678999999999974 5566666654443333333444455555554444332211 12
Q ss_pred HHHHHH-HhcCCCcEEEEEcCcccHHHHHHHHhhC----------------------------------CCeeEeecCCC
Q 015093 269 TLCDLY-ETLAITQSVIFVNTRRKVDWLTDQMRSR----------------------------------DHTVSATHGDM 313 (413)
Q Consensus 269 ~l~~~~-~~~~~~~~lIf~~~~~~a~~l~~~l~~~----------------------------------~~~~~~~~~~~ 313 (413)
.+...+ +....++++|||++++.++.++..|... ...+..+|+++
T Consensus 1144 ~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL 1223 (1724)
T 4f92_B 1144 PVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGL 1223 (1724)
T ss_dssp HHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTS
T ss_pred hHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCC
Confidence 222233 3346679999999999998888776421 23588999999
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEc----------CCCCChhHHHhhhcccCCCCC--cceEEE
Q 015093 314 DQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY----------DLPTQPENYLHRIGRSGRFGR--KGVAIN 381 (413)
Q Consensus 314 ~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~----------~~~~s~~~~~Q~~GR~~R~g~--~g~~~~ 381 (413)
++.+|..+++.|++|.++|||||++++.|+|+|...+||.. ..|.+..+|.||+||+||.|. .|.|++
T Consensus 1224 ~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avl 1303 (1724)
T 4f92_B 1224 SPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVI 1303 (1724)
T ss_dssp CHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEE
T ss_pred CHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEE
Confidence 99999999999999999999999999999999998888742 125789999999999999986 699999
Q ss_pred EeccccHHHHH
Q 015093 382 FVTRDDDRMLA 392 (413)
Q Consensus 382 ~~~~~~~~~~~ 392 (413)
++.+.+...+.
T Consensus 1304 l~~~~~~~~~~ 1314 (1724)
T 4f92_B 1304 MCQGSKKDFFK 1314 (1724)
T ss_dssp EEEGGGHHHHH
T ss_pred EecchHHHHHH
Confidence 99887765543
No 36
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.7e-40 Score=321.34 Aligned_cols=322 Identities=18% Similarity=0.215 Sum_probs=243.1
Q ss_pred hCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 57 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
..|+ .|+++|..+++.++.|+ +..++||+|||+++.+|++..... +..++|++||++|+.|..+++..+...++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---g~~vlVltptreLA~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---GKGVHVVTVNEYLASRDAEQMGKIFEFLG 152 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 4799 99999999999999998 999999999999999999843222 44899999999999999999999999999
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcC------CCCCCCccEEEEccchhhh-ccC----------
Q 015093 137 VKVHACVGGTSVREDQRILSAGVHVVVGTPGRV-FDMLRRQ------SLRPDYIRMFVLDEADEML-SRG---------- 198 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~------~~~~~~~~~iIiDE~h~~~-~~~---------- 198 (413)
+++..+.||....... ....++|+|+||+.| ++++... ...+..+.++|+||||.++ +..
T Consensus 153 l~v~~i~gg~~~~~r~--~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~ 230 (844)
T 1tf5_A 153 LTVGLNLNSMSKDEKR--EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQA 230 (844)
T ss_dssp CCEEECCTTSCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEE
T ss_pred CeEEEEeCCCCHHHHH--HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCc
Confidence 9999999998754333 334589999999999 5665543 3456778999999999987 442
Q ss_pred -----cHHHHHHHHhhCCC---------CceEE-----------------EEeeeCCh---hHHHHH--HHhcCCCEEEE
Q 015093 199 -----FKDQIYDIFQHLPG---------KIQVG-----------------VFSATMPP---EALEIT--RKFMNKPVRIL 242 (413)
Q Consensus 199 -----~~~~~~~~~~~~~~---------~~~~i-----------------~lSAT~~~---~~~~~~--~~~~~~~~~~~ 242 (413)
+...+..++..++. ..++. ++|||.+. .+...+ ..++.....+.
T Consensus 231 ~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYi 310 (844)
T 1tf5_A 231 AKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYV 310 (844)
T ss_dssp ECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEE
T ss_pred ccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceE
Confidence 45677778877762 45555 67887642 221111 11221100000
Q ss_pred e-------------------------------------------------------------------------------
Q 015093 243 V------------------------------------------------------------------------------- 243 (413)
Q Consensus 243 ~------------------------------------------------------------------------------- 243 (413)
+
T Consensus 311 v~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l 390 (844)
T 1tf5_A 311 VEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNM 390 (844)
T ss_dssp EETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred EecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCC
Confidence 0
Q ss_pred ----cCCccccCCceEEEEEeCccccHHHHHHHHHHh--cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHH
Q 015093 244 ----KRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET--LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNS 317 (413)
Q Consensus 244 ----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~ 317 (413)
.+....................+...+...+.. ..+.++||||+|++.++.+++.|++.|+++..+||++...+
T Consensus 391 ~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rE 470 (844)
T 1tf5_A 391 QVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHERE 470 (844)
T ss_dssp CEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHH
T ss_pred ceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHH
Confidence 000000000000001122345677777777754 25578999999999999999999999999999999998888
Q ss_pred HHHHHHHHhcCCCeEEEEeCccccCCCCC--------CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccH
Q 015093 318 RDIIMREFRSGSSRVLITTDLLARGIDVQ--------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388 (413)
Q Consensus 318 r~~~~~~f~~~~~~vli~t~~~~~G~d~~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 388 (413)
+..+.+.++.| .|+|||+++++|+|++ +..+||+++.|.|...|.||+||+||.|.+|.+++|++..|.
T Consensus 471 r~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 471 AQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp HHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred HHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 77665555544 6999999999999999 788999999999999999999999999999999999998764
No 37
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=5.9e-42 Score=330.20 Aligned_cols=310 Identities=16% Similarity=0.140 Sum_probs=231.2
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEE
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVH 140 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
.+|+++|.++++.+.+++++++++|||+|||++++.++...+... +.+++|++|+++|+.||.++++++....+..+.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~ 189 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIK 189 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC--SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CCeEEEEECcHHHHHHHHHHHHHhhcCCccceE
Confidence 389999999999999999999999999999999988887766432 349999999999999999999998665567788
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
.+.++...... .....+|+|+|++.+... ....+.++++||+||||++.+ ..+..++..++...+++++|
T Consensus 190 ~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lS 259 (510)
T 2oca_A 190 KIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLS 259 (510)
T ss_dssp ECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEE
T ss_pred EEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEE
Confidence 88887664332 345689999999976532 223456689999999999854 45667778887788999999
Q ss_pred eeCChhHHHH--HHHhcCCCEEEEecCC------ccccCCceEEEEEeCcc--------------------ccHHHHHHH
Q 015093 221 ATMPPEALEI--TRKFMNKPVRILVKRD------ELTLEGIKQFHVNVDKE--------------------EWKLDTLCD 272 (413)
Q Consensus 221 AT~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~ 272 (413)
|||++..... ...+++.. ....... ...+..+.......+.. ..+...+..
T Consensus 260 ATp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (510)
T 2oca_A 260 GSLRDGKANIMQYVGMFGEI-FKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAK 338 (510)
T ss_dssp SCGGGCSSCHHHHHHHHCSE-ECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHH
T ss_pred eCCCCCcccHHHhHHhhCCe-EEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHH
Confidence 9997553221 11222221 1111111 11111112222211110 112233444
Q ss_pred HHHhc---CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEe-CccccCCCCCCC
Q 015093 273 LYETL---AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITT-DLLARGIDVQQV 348 (413)
Q Consensus 273 ~~~~~---~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t-~~~~~G~d~~~~ 348 (413)
++... ...+++||++ .+.++.+++.|.+.+..+..+||+++..+|+++++.|++|+.+||||| +++++|+|+|++
T Consensus 339 ~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v 417 (510)
T 2oca_A 339 LAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNL 417 (510)
T ss_dssp HHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSE
T ss_pred HHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccC
Confidence 44433 3345556655 899999999999988899999999999999999999999999999999 999999999999
Q ss_pred CEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEec
Q 015093 349 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT 384 (413)
Q Consensus 349 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 384 (413)
++||++++|+|...|.|++||+||.|+.+.++++++
T Consensus 418 ~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 418 HHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999998774555544
No 38
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=4.7e-40 Score=339.17 Aligned_cols=322 Identities=17% Similarity=0.208 Sum_probs=246.4
Q ss_pred CCCCHHHHHHH-HhCCCCCCcHHHHhhhhhhhC----CC--cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 45 MGLKENLLRGI-YAYGFEKPSAIQQRGIVPFCK----GL--DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 45 ~~l~~~~~~~l-~~~~~~~~~~~Q~~~~~~~~~----~~--~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
++.++...+.+ ..++| +|+++|.++++.+.+ ++ ++++++|||+|||.+++.+++..+.. +.+++|++||
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~~vlvlvPt 661 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HKQVAVLVPT 661 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TCEEEEECSS
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CCeEEEEech
Confidence 45556555555 45677 579999999999876 55 89999999999999998888766543 3499999999
Q ss_pred HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHH----HHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchh
Q 015093 118 RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQR----ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE 193 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~ 193 (413)
++|+.|+++.++++....++++..+++......... .....++|+|+||+.+. ....+.++++||+||+|+
T Consensus 662 ~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~ 736 (1151)
T 2eyq_A 662 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHR 736 (1151)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGG
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHh
Confidence 999999999999888777888888887655443322 22346899999997663 345677899999999999
Q ss_pred hhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHH
Q 015093 194 MLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDL 273 (413)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (413)
+.. .....+..++.+.++++|||||.+...........+... ..........+......... ......+
T Consensus 737 ~g~-----~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~--i~~~~~~r~~i~~~~~~~~~----~~i~~~i 805 (1151)
T 2eyq_A 737 FGV-----RHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI--IATPPARRLAVKTFVREYDS----MVVREAI 805 (1151)
T ss_dssp SCH-----HHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEE--CCCCCCBCBCEEEEEEECCH----HHHHHHH
T ss_pred cCh-----HHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceE--EecCCCCccccEEEEecCCH----HHHHHHH
Confidence 532 233445555567899999999987765555444333221 11111122233333332221 2222233
Q ss_pred HHhc-CCCcEEEEEcCcccHHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCE
Q 015093 274 YETL-AITQSVIFVNTRRKVDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 350 (413)
Q Consensus 274 ~~~~-~~~~~lIf~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~ 350 (413)
++.. .+++++|||++++.++.+++.|++. +..+..+||+++..+|+++++.|++|+.+|||||+++++|+|+|++++
T Consensus 806 l~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~ 885 (1151)
T 2eyq_A 806 LREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 885 (1151)
T ss_dssp HHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEE
T ss_pred HHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcE
Confidence 3332 5679999999999999999999987 788999999999999999999999999999999999999999999999
Q ss_pred EEEcCC-CCChhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 351 VINYDL-PTQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 351 vi~~~~-~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
||+.+. +++..+|.|++||+||.|+.|.|++++.+.
T Consensus 886 VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 886 IIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp EEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred EEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 999887 578999999999999999999999998764
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=8.5e-41 Score=353.88 Aligned_cols=330 Identities=18% Similarity=0.268 Sum_probs=246.9
Q ss_pred CCCCCcHHHHhhhhhhh-CCCcEEEeCCCCCchhHHHHHHHHHhcccc--------cCceeEEEEcccHHHHHHHHHHHH
Q 015093 59 GFEKPSAIQQRGIVPFC-KGLDVIQQAQSGTGKTATFCSGILQQLDYE--------SLQCQALVLAPTRELAQQIEKVMR 129 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~~~-~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~--------~~~~~~lvl~P~~~l~~q~~~~~~ 129 (413)
||..|+++|.++++.+. ++++++++||||||||+++.++++..+... ..+.+++|++|+++|++|..+.++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 68899999999999876 478899999999999999999999887542 235689999999999999999999
Q ss_pred HhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCC--CCCCccEEEEccchhhhccCcHHHHHHHH
Q 015093 130 ALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL--RPDYIRMFVLDEADEMLSRGFKDQIYDIF 207 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~--~~~~~~~iIiDE~h~~~~~~~~~~~~~~~ 207 (413)
+.....++++..++|+....... ...++|+|+||+++..++.+... .++.+++||+||+|.+.+ .++..+..++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 98888899999999987643321 23579999999999766655432 256789999999997754 5665555444
Q ss_pred h-------hCCCCceEEEEeeeCChhHHHHHHHhcCCCE-EEEecCCccccCCceEEEEEeCccc--cHHHHH----HHH
Q 015093 208 Q-------HLPGKIQVGVFSATMPPEALEITRKFMNKPV-RILVKRDELTLEGIKQFHVNVDKEE--WKLDTL----CDL 273 (413)
Q Consensus 208 ~-------~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l----~~~ 273 (413)
. ..+...|+|++|||.++ ..++..++...+. .........++..+.+.+....... .....+ ...
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEK 310 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHH
Confidence 3 34668899999999974 4555555443321 1122223344444444433333211 112222 222
Q ss_pred HHh-cCCCcEEEEEcCcccHHHHHHHHhhC-------------------------------------CCeeEeecCCCCH
Q 015093 274 YET-LAITQSVIFVNTRRKVDWLTDQMRSR-------------------------------------DHTVSATHGDMDQ 315 (413)
Q Consensus 274 ~~~-~~~~~~lIf~~~~~~a~~l~~~l~~~-------------------------------------~~~~~~~~~~~~~ 315 (413)
+.. ..++++||||++++.|+.+++.|.+. ...+..+||++++
T Consensus 311 v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~ 390 (1724)
T 4f92_B 311 IMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTR 390 (1724)
T ss_dssp HTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCT
T ss_pred HHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCH
Confidence 222 34578999999999999888887531 2347899999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE----cC------CCCChhHHHhhhcccCCCCC--cceEEEEe
Q 015093 316 NSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD------LPTQPENYLHRIGRSGRFGR--KGVAINFV 383 (413)
Q Consensus 316 ~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~------~~~s~~~~~Q~~GR~~R~g~--~g~~~~~~ 383 (413)
.+|..+++.|++|.++|||||++++.|+|+|..++||. ++ .|.|..+|.||+||+||.|. .|.++++.
T Consensus 391 ~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~ 470 (1724)
T 4f92_B 391 VDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILIT 470 (1724)
T ss_dssp HHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEe
Confidence 99999999999999999999999999999999998874 22 35689999999999999874 69999999
Q ss_pred ccccHHHHHH
Q 015093 384 TRDDDRMLAD 393 (413)
Q Consensus 384 ~~~~~~~~~~ 393 (413)
.+.+......
T Consensus 471 ~~~~~~~~~~ 480 (1724)
T 4f92_B 471 SHGELQYYLS 480 (1724)
T ss_dssp ESTTCCHHHH
T ss_pred cchhHHHHHH
Confidence 8876554433
No 40
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.7e-40 Score=316.92 Aligned_cols=296 Identities=19% Similarity=0.248 Sum_probs=222.9
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCce-EE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVK-VH 140 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~-~~ 140 (413)
.|+++|.++++.+..++++++++|||+|||++++.++... +.++||++|+++|+.||.+++.++ +.. +.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~ 162 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC----CCcceE
Confidence 6999999999999999999999999999999998887754 348999999999999999999884 677 88
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
.++|+.. ...+|+|+|++.+...+... ..++++||+||||++.+..+.. +...++ ..+++++|
T Consensus 163 ~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~~-~~~~l~lS 225 (472)
T 2fwr_A 163 EFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMSI-APFRLGLT 225 (472)
T ss_dssp EBSSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTCC-CSEEEEEE
T ss_pred EECCCcC---------CcCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhcC-CCeEEEEe
Confidence 8888764 24789999999998766431 1347999999999998877653 444554 67899999
Q ss_pred eeCChh-------------------HHHHHHHhcCCCEE--EEecCCcc------------------------ccCCceE
Q 015093 221 ATMPPE-------------------ALEITRKFMNKPVR--ILVKRDEL------------------------TLEGIKQ 255 (413)
Q Consensus 221 AT~~~~-------------------~~~~~~~~~~~~~~--~~~~~~~~------------------------~~~~~~~ 255 (413)
|||... ..+....++..+.. +....... ....+..
T Consensus 226 ATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 305 (472)
T 2fwr_A 226 ATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNK 305 (472)
T ss_dssp SCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTT
T ss_pred cCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHH
Confidence 999732 11111111111110 00000000 0000000
Q ss_pred EEEE--------------------eCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCH
Q 015093 256 FHVN--------------------VDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQ 315 (413)
Q Consensus 256 ~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~ 315 (413)
.... ......+...+..+++...++++||||++.+.++.+++.|. +..+||+++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~ 380 (472)
T 2fwr_A 306 IVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSR 380 (472)
T ss_dssp TTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCS
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCH
Confidence 0000 00123456778888888888899999999999999999884 5679999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCc---ceEEEEeccccHH
Q 015093 316 NSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK---GVAINFVTRDDDR 389 (413)
Q Consensus 316 ~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~---g~~~~~~~~~~~~ 389 (413)
.+|+++++.|++|+.+|||+|+++++|+|+|++++||++++|+|+..|.|++||+||.|+. ..++.+++....+
T Consensus 381 ~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~e 457 (472)
T 2fwr_A 381 EEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGE 457 (472)
T ss_dssp HHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-
T ss_pred HHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCch
Confidence 9999999999999999999999999999999999999999999999999999999999853 3455566655433
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=4.9e-41 Score=325.77 Aligned_cols=323 Identities=17% Similarity=0.129 Sum_probs=231.1
Q ss_pred CCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHH
Q 015093 45 MGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQI 124 (413)
Q Consensus 45 ~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~ 124 (413)
+++++.+.+++... ...+.|+|..+++.+.+++++++.+|||||||++++++++..+.. .+.+++|++|+++|+.|+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--~~~~vLvl~PtreLa~Qi 231 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEM 231 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEcChHHHHHHH
Confidence 55666666655543 367888888889999999999999999999999999999887654 245899999999999999
Q ss_pred HHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHH
Q 015093 125 EKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIY 204 (413)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~ 204 (413)
.+.++. ..+....+... .....+..+.++|.+.+.+.+... ..+.++++||+||||++ +..+...+.
T Consensus 232 ~~~l~~------~~v~~~~~~l~-----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~ 298 (618)
T 2whx_A 232 EEALRG------LPIRYQTPAVK-----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARG 298 (618)
T ss_dssp HHHTTT------SCEEECCTTSS-----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHH
T ss_pred HHHhcC------CceeEecccce-----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHH
Confidence 987752 23332221100 011233467788988888766654 34677999999999987 444555566
Q ss_pred HHHhhCC-CCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEE
Q 015093 205 DIFQHLP-GKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSV 283 (413)
Q Consensus 205 ~~~~~~~-~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 283 (413)
.+...++ .+.+++++|||+++....+.. ..+..+..... .+. .....+...+.. ..+++|
T Consensus 299 ~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-------------~~~--~~~~~ll~~l~~-~~~~~L 359 (618)
T 2whx_A 299 YISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-------------IPE--RSWNTGFDWITD-YQGKTV 359 (618)
T ss_dssp HHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-------------CCS--SCCSSSCHHHHH-CCSCEE
T ss_pred HHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-------------CCH--HHHHHHHHHHHh-CCCCEE
Confidence 6665554 578999999999765432111 11111111110 010 011112222333 357999
Q ss_pred EEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEE------------
Q 015093 284 IFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV------------ 351 (413)
Q Consensus 284 If~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~v------------ 351 (413)
|||++++.++.+++.|++.++.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 360 VF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~ 434 (618)
T 2whx_A 360 WFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVIL 434 (618)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEE
T ss_pred EEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceec
Confidence 99999999999999999999999999985 688899999999999999999999999997 8888
Q ss_pred --------EEcCCCCChhHHHhhhcccCCCCC-cceEEEEec---cccHHHHHHHHHHhccccccCCc
Q 015093 352 --------INYDLPTQPENYLHRIGRSGRFGR-KGVAINFVT---RDDDRMLADIQRFYNVVIEELPA 407 (413)
Q Consensus 352 --------i~~~~~~s~~~~~Q~~GR~~R~g~-~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 407 (413)
++++.|.|..+|+||+||+||.|. +|.|+++++ +.+...+..+...+......+|.
T Consensus 435 ~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~ 502 (618)
T 2whx_A 435 TDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPE 502 (618)
T ss_dssp CSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTT
T ss_pred ccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCc
Confidence 566668999999999999999964 899999998 67777777777766554444433
No 42
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.3e-38 Score=307.29 Aligned_cols=322 Identities=17% Similarity=0.202 Sum_probs=225.6
Q ss_pred CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|. .|+++|..+++.++.|+ +..++||+|||+++++|++..... +..++|++||+.|+.|..+.+..++..+++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---g~~vlVltPTreLA~Q~~e~~~~l~~~lgl 144 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAENNRPLFEFLGL 144 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---SSCCEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---CCcEEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 454 89999999999999998 999999999999999999854332 348999999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcCC------CCCCCccEEEEccchhhh-ccC-----------
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRV-FDMLRRQS------LRPDYIRMFVLDEADEML-SRG----------- 198 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~~------~~~~~~~~iIiDE~h~~~-~~~----------- 198 (413)
++..+.||...... .....++|+|+||+.| ++++...- ..+..+.++|+||||.++ +..
T Consensus 145 ~v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~ 222 (853)
T 2fsf_A 145 TVGINLPGMPAPAK--REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAE 222 (853)
T ss_dssp CEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC--
T ss_pred eEEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCc
Confidence 99999999875432 2334589999999999 67776542 456779999999999987 332
Q ss_pred ----cHHHHHHHHhhCCC--------------------CceEE------------------------EEeeeCCh---hH
Q 015093 199 ----FKDQIYDIFQHLPG--------------------KIQVG------------------------VFSATMPP---EA 227 (413)
Q Consensus 199 ----~~~~~~~~~~~~~~--------------------~~~~i------------------------~lSAT~~~---~~ 227 (413)
+...+..++..++. ..++. ++|||.+. .+
T Consensus 223 ~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i 302 (853)
T 2fsf_A 223 DSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHV 302 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHH
Confidence 33455555555542 22332 67777542 11
Q ss_pred HHHH--HHhcCC---------------------------------C----EEEEecCCccccCC----------------
Q 015093 228 LEIT--RKFMNK---------------------------------P----VRILVKRDELTLEG---------------- 252 (413)
Q Consensus 228 ~~~~--~~~~~~---------------------------------~----~~~~~~~~~~~~~~---------------- 252 (413)
...+ ..++.. + ..+.+.........
T Consensus 303 ~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~Gm 382 (853)
T 2fsf_A 303 TAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGM 382 (853)
T ss_dssp ------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcC
Confidence 1000 000000 0 00001000000000
Q ss_pred ------------------------------ceEEEEEeCccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHh
Q 015093 253 ------------------------------IKQFHVNVDKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMR 300 (413)
Q Consensus 253 ------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~ 300 (413)
.............+...+...+... .+.++||||+|++.++.+++.|+
T Consensus 383 TGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~ 462 (853)
T 2fsf_A 383 TGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELT 462 (853)
T ss_dssp ECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHH
Confidence 0000112233456888888877543 55789999999999999999999
Q ss_pred hCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCC--------------------------------
Q 015093 301 SRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQV-------------------------------- 348 (413)
Q Consensus 301 ~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~-------------------------------- 348 (413)
+.|+++..+|+++...++..+.+.++.| .|+|||+++++|+|++..
T Consensus 463 ~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 540 (853)
T 2fsf_A 463 KAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAV 540 (853)
T ss_dssp HTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHH
T ss_pred HCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHH
Confidence 9999999999999888888888888877 699999999999999864
Q ss_pred -----CEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHH
Q 015093 349 -----SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDR 389 (413)
Q Consensus 349 -----~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 389 (413)
.+||.++.|.|...|.|++||+||.|.+|.+++|++..|..
T Consensus 541 ~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l 586 (853)
T 2fsf_A 541 LEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDAL 586 (853)
T ss_dssp HHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGG
T ss_pred HhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHH
Confidence 59999999999999999999999999999999999987743
No 43
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=3.7e-38 Score=304.45 Aligned_cols=324 Identities=19% Similarity=0.239 Sum_probs=247.2
Q ss_pred hCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 57 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
..|+ .|+++|..+++.+..|+ +..++||+|||+++.+|++..... +..++|++||+.|+.|..+++..+...++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---g~~v~VvTpTreLA~Qdae~m~~l~~~lG 180 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---GNGVHIVTVNDYLAKRDSEWMGRVHRFLG 180 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---TSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---CCCeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 3687 99999999999999998 999999999999999999643332 34799999999999999999999999999
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcC------CCCCCCccEEEEccchhhh-cc-----------
Q 015093 137 VKVHACVGGTSVREDQRILSAGVHVVVGTPGRV-FDMLRRQ------SLRPDYIRMFVLDEADEML-SR----------- 197 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~------~~~~~~~~~iIiDE~h~~~-~~----------- 197 (413)
+++.++.|+....... ....++|+|+||+.| ++++... ...+..+.++|+||||.++ +.
T Consensus 181 Lsv~~i~gg~~~~~r~--~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~ 258 (922)
T 1nkt_A 181 LQVGVILATMTPDERR--VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPA 258 (922)
T ss_dssp CCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEEC
T ss_pred CeEEEEeCCCCHHHHH--HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCC
Confidence 9999999998754332 333589999999999 6776653 3556778999999999987 32
Q ss_pred ----CcHHHHHHHHhhCC---------CCceEE-----------------EEeeeCCh---hHHHHH--HHhcCCCEEEE
Q 015093 198 ----GFKDQIYDIFQHLP---------GKIQVG-----------------VFSATMPP---EALEIT--RKFMNKPVRIL 242 (413)
Q Consensus 198 ----~~~~~~~~~~~~~~---------~~~~~i-----------------~lSAT~~~---~~~~~~--~~~~~~~~~~~ 242 (413)
++...+..++..++ +..++. ++|||.+. .+...+ ..++.....+.
T Consensus 259 ~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYi 338 (922)
T 1nkt_A 259 DGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYI 338 (922)
T ss_dssp CCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEE
T ss_pred CcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhccccee
Confidence 35677888888887 566777 77888653 222111 11221110000
Q ss_pred --------ec----------------------------------------------------------------------
Q 015093 243 --------VK---------------------------------------------------------------------- 244 (413)
Q Consensus 243 --------~~---------------------------------------------------------------------- 244 (413)
+.
T Consensus 339 V~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l 418 (922)
T 1nkt_A 339 VRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKL 418 (922)
T ss_dssp ECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred eecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCC
Confidence 00
Q ss_pred -----CCccccCCceEEEEEeCccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHH
Q 015093 245 -----RDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNS 317 (413)
Q Consensus 245 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~ 317 (413)
+...+................+...+...+... .+.++||||+|++.++.+++.|++.|+++..+|+++...+
T Consensus 419 ~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rE 498 (922)
T 1nkt_A 419 GVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQE 498 (922)
T ss_dssp EEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHH
T ss_pred CeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHH
Confidence 000000000000011223356777777766543 5568999999999999999999999999999999988777
Q ss_pred HHHHHHHHhcCCCeEEEEeCccccCCCCCCC-------------------------------------------------
Q 015093 318 RDIIMREFRSGSSRVLITTDLLARGIDVQQV------------------------------------------------- 348 (413)
Q Consensus 318 r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~------------------------------------------------- 348 (413)
+..+.+.++.| .|+|||+++++|+|++..
T Consensus 499 a~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 576 (922)
T 1nkt_A 499 ATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIE 576 (922)
T ss_dssp HHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 77777777766 699999999999999965
Q ss_pred ---CEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 349 ---SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 349 ---~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
.+||.++.|.|...|.|++||+||.|.+|.+++|++..|.-+
T Consensus 577 ~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~ 621 (922)
T 1nkt_A 577 AGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELM 621 (922)
T ss_dssp TTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHH
T ss_pred cCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHH
Confidence 489999999999999999999999999999999999887644
No 44
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.9e-39 Score=322.25 Aligned_cols=336 Identities=15% Similarity=0.186 Sum_probs=244.1
Q ss_pred ccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhC-CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc
Q 015093 37 EVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA 115 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~ 115 (413)
....+|..+++++.+.+.+...+ ..|.+.|.+++..+.. ++++++++|||||||+.....++........+.++++++
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~ 147 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQ 147 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecC
Confidence 34678999999999999999888 6788889888877665 567999999999999843332322222222245799999
Q ss_pred ccHHHHHHHHHHHHHhh-cccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchh-
Q 015093 116 PTRELAQQIEKVMRALG-DYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE- 193 (413)
Q Consensus 116 P~~~l~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~- 193 (413)
|+++++.|+.+.+.... ...+..++........ .....+|+++|++.+.+.+... ..+.++++||+||+|.
T Consensus 148 P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~------~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R 220 (773)
T 2xau_A 148 PRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK------TSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHER 220 (773)
T ss_dssp SCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE------CCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGC
T ss_pred chHHHHHHHHHHHHHHhCCchhheecceeccccc------cCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCcccc
Confidence 99999999988775533 2223333332221110 1235789999999999877664 3477799999999996
Q ss_pred hhccCc-HHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccc---cHHHH
Q 015093 194 MLSRGF-KDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEE---WKLDT 269 (413)
Q Consensus 194 ~~~~~~-~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 269 (413)
..+... ...+..+.... ++.+++++|||++.. .+ ..++.....+...... ..+...+....... ..+..
T Consensus 221 ~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~--~l-~~~~~~~~vi~v~gr~---~pv~~~~~~~~~~~~~~~~l~~ 293 (773)
T 2xau_A 221 TLATDILMGLLKQVVKRR-PDLKIIIMSATLDAE--KF-QRYFNDAPLLAVPGRT---YPVELYYTPEFQRDYLDSAIRT 293 (773)
T ss_dssp CHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH--HH-HHHTTSCCEEECCCCC---CCEEEECCSSCCSCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhC-CCceEEEEeccccHH--HH-HHHhcCCCcccccCcc---cceEEEEecCCchhHHHHHHHH
Confidence 443222 23344444444 478999999999642 33 3444443333332221 12333332222222 12334
Q ss_pred HHHHHHhcCCCcEEEEEcCcccHHHHHHHHhh-----------CCCeeEeecCCCCHHHHHHHHHHHh-----cCCCeEE
Q 015093 270 LCDLYETLAITQSVIFVNTRRKVDWLTDQMRS-----------RDHTVSATHGDMDQNSRDIIMREFR-----SGSSRVL 333 (413)
Q Consensus 270 l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~-----~~~~~vl 333 (413)
+..++.....+++||||+++++++.+++.|.+ .++.+..+||+++..+|.++++.|. +|..+||
T Consensus 294 l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVl 373 (773)
T 2xau_A 294 VLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVV 373 (773)
T ss_dssp HHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEE
T ss_pred HHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEE
Confidence 44455555678999999999999999999985 5788999999999999999999999 9999999
Q ss_pred EEeCccccCCCCCCCCEEEEcCC------------------CCChhHHHhhhcccCCCCCcceEEEEeccccH
Q 015093 334 ITTDLLARGIDVQQVSLVINYDL------------------PTQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388 (413)
Q Consensus 334 i~t~~~~~G~d~~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 388 (413)
|||+++++|+|+|++++||+++. |.|..+|.||+||+||. ++|.|+.++++.+.
T Consensus 374 VAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 374 ISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 99999999999999999999887 88999999999999998 78999999976554
No 45
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=5.2e-39 Score=302.99 Aligned_cols=287 Identities=18% Similarity=0.151 Sum_probs=209.0
Q ss_pred CCCCCcHHHHhhhhhhhCCCcE-EEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 59 GFEKPSAIQQRGIVPFCKGLDV-IQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~~~~~~~~-lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
|+.+|+++|. +++.++++++. ++.+|||||||++++++++..+... +.+++|++|+++|+.|+.+.+. +.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~------g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR--RLRTLILAPTRVVAAEMEEALR------GL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc--CCcEEEECCCHHHHHHHHHHhc------Cc
Confidence 5678999985 79999988876 9999999999999888888765432 4589999999999999998774 33
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHH-hhCCCCceE
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIF-QHLPGKIQV 216 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~-~~~~~~~~~ 216 (413)
.+......... ....+..|.++|++.+.+.+... ..+.++++||+||||++ +.........+. ...+.+.++
T Consensus 72 ~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~ 144 (451)
T 2jlq_A 72 PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAA 144 (451)
T ss_dssp CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEE
T ss_pred eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceE
Confidence 33332222110 11234578899999998877654 44677899999999976 222222221121 223457899
Q ss_pred EEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHH
Q 015093 217 GVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLT 296 (413)
Q Consensus 217 i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~ 296 (413)
+++|||+++.... .+...+..+.... ...... ...+...+.. ..+++||||++++.++.++
T Consensus 145 i~~SAT~~~~~~~---~~~~~~~~~~~~~-~~p~~~--------------~~~~~~~l~~-~~~~~lVF~~s~~~a~~l~ 205 (451)
T 2jlq_A 145 IFMTATPPGSTDP---FPQSNSPIEDIER-EIPERS--------------WNTGFDWITD-YQGKTVWFVPSIKAGNDIA 205 (451)
T ss_dssp EEECSSCTTCCCS---SCCCSSCEEEEEC-CCCSSC--------------CSSSCHHHHH-CCSCEEEECSSHHHHHHHH
T ss_pred EEEccCCCccchh---hhcCCCceEecCc-cCCchh--------------hHHHHHHHHh-CCCCEEEEcCCHHHHHHHH
Confidence 9999999764322 1222222222110 000000 0011222333 3569999999999999999
Q ss_pred HHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcC--------------------C
Q 015093 297 DQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD--------------------L 356 (413)
Q Consensus 297 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~--------------------~ 356 (413)
+.|++.++.+..+|+++. +++++.|++|+.+|||||+++++|+|+|+ ++||+++ .
T Consensus 206 ~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~ 280 (451)
T 2jlq_A 206 NCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPI 280 (451)
T ss_dssp HHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEE
T ss_pred HHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccc
Confidence 999999999999999753 57899999999999999999999999999 9999988 8
Q ss_pred CCChhHHHhhhcccCCCCC-cceEEEEecc
Q 015093 357 PTQPENYLHRIGRSGRFGR-KGVAINFVTR 385 (413)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~g~-~g~~~~~~~~ 385 (413)
|.|..+|.||+||+||.|+ +|.|++++..
T Consensus 281 p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 281 PVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 9999999999999999998 8999888754
No 46
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=8.9e-39 Score=311.73 Aligned_cols=306 Identities=22% Similarity=0.228 Sum_probs=213.2
Q ss_pred HHHhCCCC-----CCcHHHH-----hhhhhhh------CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 54 GIYAYGFE-----KPSAIQQ-----RGIVPFC------KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 54 ~l~~~~~~-----~~~~~Q~-----~~~~~~~------~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
.+..+||. .|+++|. .+++.++ +++++++++|||||||++|+++++..+... +.+++|++||
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--~~~~lilaPT 279 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--RLRTAVLAPT 279 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--TCCEEEEESS
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEccH
Confidence 34445555 8999999 9998888 899999999999999999999998775542 4589999999
Q ss_pred HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc
Q 015093 118 RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR 197 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~ 197 (413)
++|+.|+++.++.+. +. ...+... .....+.-+-+.+.+.+.+.+... ..+.++++||+||+|++ +.
T Consensus 280 r~La~Q~~~~l~~~~----i~--~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~ 346 (673)
T 2wv9_A 280 RVVAAEMAEALRGLP----VR--YLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DP 346 (673)
T ss_dssp HHHHHHHHHHTTTSC----CE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CH
T ss_pred HHHHHHHHHHHhcCC----ee--eeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-Cc
Confidence 999999998887542 21 1111100 011122345566667776655554 45778999999999987 22
Q ss_pred CcHHHHHHHHhhC-CCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHh
Q 015093 198 GFKDQIYDIFQHL-PGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET 276 (413)
Q Consensus 198 ~~~~~~~~~~~~~-~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (413)
.+......+.... +...++++||||+++....+... ..++ ......... .....+...+..
T Consensus 347 ~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i--------------~~v~~~~~~--~~~~~~l~~l~~ 408 (673)
T 2wv9_A 347 ASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPV--------------HDVSSEIPD--RAWSSGFEWITD 408 (673)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCE--------------EEEECCCCS--SCCSSCCHHHHS
T ss_pred cHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCce--------------EEEeeecCH--HHHHHHHHHHHh
Confidence 1112222222222 25789999999997653211110 0111 111100111 011111122222
Q ss_pred cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE---
Q 015093 277 LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN--- 353 (413)
Q Consensus 277 ~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~--- 353 (413)
..+++||||++++.++.+++.|++.++.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 409 -~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~ 482 (673)
T 2wv9_A 409 -YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRK 482 (673)
T ss_dssp -CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCE
T ss_pred -CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCC
Confidence 46799999999999999999999999999999994 789999999999999999999999999999 999997
Q ss_pred -----------------cCCCCChhHHHhhhcccCCC-CCcceEEEEe---ccccHHHHHHHHHHh
Q 015093 354 -----------------YDLPTQPENYLHRIGRSGRF-GRKGVAINFV---TRDDDRMLADIQRFY 398 (413)
Q Consensus 354 -----------------~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~~---~~~~~~~~~~~~~~~ 398 (413)
++.|.|..+|.||+||+||. |++|.|++++ ++.+...+..+...+
T Consensus 483 ~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 483 SVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp ECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred cccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 45788999999999999998 7899999996 456655555555544
No 47
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=4.4e-38 Score=307.99 Aligned_cols=312 Identities=16% Similarity=0.187 Sum_probs=196.1
Q ss_pred CCcHHHHhhhhhhhC----C-CcEEEeCCCCCchhHHHHHHHHHhcccc------cCceeEEEEcccHHHHHHHH-HHHH
Q 015093 62 KPSAIQQRGIVPFCK----G-LDVIQQAQSGTGKTATFCSGILQQLDYE------SLQCQALVLAPTRELAQQIE-KVMR 129 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~----~-~~~lv~~~tGsGKT~~~~~~i~~~l~~~------~~~~~~lvl~P~~~l~~q~~-~~~~ 129 (413)
.|+++|.++++.+.. + +++++++|||+|||++++..+...+... ..+.++||++|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 799999999998875 4 5699999999999999866655544332 14569999999999999998 7777
Q ss_pred HhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc----CCCCCCCccEEEEccchhhhccCcHHHHHH
Q 015093 130 ALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR----QSLRPDYIRMFVLDEADEMLSRGFKDQIYD 205 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~----~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~ 205 (413)
.++ ..+..+.++. .....+|+|+||+.|...... ..+....+++||+||||++.+.. ...+..
T Consensus 258 ~~~----~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~ 324 (590)
T 3h1t_A 258 PFG----DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWRE 324 (590)
T ss_dssp TTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHH
T ss_pred hcc----hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHH
Confidence 653 3333433322 234679999999999876542 23445668999999999986532 244556
Q ss_pred HHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCC-----ccccCCceEEEE----------------------
Q 015093 206 IFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD-----ELTLEGIKQFHV---------------------- 258 (413)
Q Consensus 206 ~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---------------------- 258 (413)
++..++ ..+++++||||..........+++.+........ ...+........
T Consensus 325 il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (590)
T 3h1t_A 325 ILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP 403 (590)
T ss_dssp HHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------------
T ss_pred HHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccc
Confidence 777776 4679999999986544444444554332221110 000000000000
Q ss_pred ----EeCcc------ccH----HHHHHHHHHhc-CCCcEEEEEcCcccHHHHHHHHhhCCC--------eeEeecCCCCH
Q 015093 259 ----NVDKE------EWK----LDTLCDLYETL-AITQSVIFVNTRRKVDWLTDQMRSRDH--------TVSATHGDMDQ 315 (413)
Q Consensus 259 ----~~~~~------~~~----~~~l~~~~~~~-~~~~~lIf~~~~~~a~~l~~~l~~~~~--------~~~~~~~~~~~ 315 (413)
..... ... ...+...++.. ..+++||||+++++|+.+++.|.+.+. .+..+||.++
T Consensus 404 ~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~- 482 (590)
T 3h1t_A 404 DGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG- 482 (590)
T ss_dssp -----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-
T ss_pred cccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-
Confidence 00000 001 12233334333 457999999999999999999987543 2677888875
Q ss_pred HHHHHHHHHHhcCCCe---EEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCC---cceEEEEeccccH
Q 015093 316 NSRDIIMREFRSGSSR---VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGR---KGVAINFVTRDDD 388 (413)
Q Consensus 316 ~~r~~~~~~f~~~~~~---vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~---~g~~~~~~~~~~~ 388 (413)
.+|+++++.|++|+.+ ||++|+++++|+|+|.+++||+++++.|...|+|++||++|.+. +..++++-...+.
T Consensus 483 ~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~g~~ 561 (590)
T 3h1t_A 483 KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYTGSA 561 (590)
T ss_dssp HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECSSSH
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecCCcH
Confidence 3799999999998765 88899999999999999999999999999999999999999874 3444444444343
No 48
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=9.2e-39 Score=306.77 Aligned_cols=279 Identities=20% Similarity=0.224 Sum_probs=210.4
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.++++|..+++.+.+++++++.+|||||||.++++++++. +.+++|++|+++|+.|+.+.+.+.. +..+..
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~ 287 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKAH---GIDPNI 287 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHHH---SCCCEE
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------CCeEEEEcchHHHHHHHHHHHHHHh---CCCeeE
Confidence 5677888888888889999999999999999998887763 3489999999999999988776543 455666
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCce--EEEE
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQ--VGVF 219 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~--~i~l 219 (413)
..|+.. .....+|+|+||+.| +....+.+.++++||+||||.+ +.++...+..+++.++...+ ++++
T Consensus 288 ~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~~llil~ 356 (666)
T 3o8b_A 288 RTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGARLVVLA 356 (666)
T ss_dssp ECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTCSEEEEE
T ss_pred EECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcCCceEEEE
Confidence 666654 245689999999998 4556677788999999999854 55566667778888876555 7888
Q ss_pred eeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHH
Q 015093 220 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQM 299 (413)
Q Consensus 220 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l 299 (413)
|||+++... ...+........ ......+ ... ... +.....+++||||++++.++.+++.|
T Consensus 357 SAT~~~~i~------~~~p~i~~v~~~---~~~~i~~---~~~-~~~-------l~~~~~~~vLVFv~Tr~~ae~la~~L 416 (666)
T 3o8b_A 357 TATPPGSVT------VPHPNIEEVALS---NTGEIPF---YGK-AIP-------IEAIRGGRHLIFCHSKKKCDELAAKL 416 (666)
T ss_dssp ESSCTTCCC------CCCTTEEEEECB---SCSSEEE---TTE-EEC-------GGGSSSSEEEEECSCHHHHHHHHHHH
T ss_pred CCCCCcccc------cCCcceEEEeec---ccchhHH---HHh-hhh-------hhhccCCcEEEEeCCHHHHHHHHHHH
Confidence 999986321 011110000000 0000000 000 000 12336689999999999999999999
Q ss_pred hhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE----------cC-----------CCC
Q 015093 300 RSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----------YD-----------LPT 358 (413)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----------~~-----------~~~ 358 (413)
++.++.+..+||++++.+ |.++..+|||||+++++|+|+| ++.||+ ++ .|.
T Consensus 417 ~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~ 488 (666)
T 3o8b_A 417 SGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQ 488 (666)
T ss_dssp HTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEEC
T ss_pred HhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcC
Confidence 999999999999998764 4566679999999999999997 999984 45 789
Q ss_pred ChhHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 359 QPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 359 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
|..+|+||+||+|| |++|. +.|+++.+...
T Consensus 489 s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 489 DAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp BHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred CHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 99999999999999 89999 89988765433
No 49
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.9e-38 Score=297.74 Aligned_cols=297 Identities=17% Similarity=0.193 Sum_probs=196.3
Q ss_pred hhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHH
Q 015093 73 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQ 152 (413)
Q Consensus 73 ~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (413)
.+.+|+++++++|||||||++++++++..+... +.+++|++||++|+.|+++.++.+ .+....+....
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~~~---- 71 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAFSA---- 71 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCCCC----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CCeEEEEcchHHHHHHHHHHHhcC------CeEEeccccee----
Confidence 567899999999999999999989888866543 458999999999999999887744 22222221100
Q ss_pred HHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhC-CCCceEEEEeeeCChhHHHHH
Q 015093 153 RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHL-PGKIQVGVFSATMPPEALEIT 231 (413)
Q Consensus 153 ~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~lSAT~~~~~~~~~ 231 (413)
....+.-+-..+.+.+...+. ....+.++++||+||+|++ +..+...+..+.... +.+.+++++|||+++....+.
T Consensus 72 -v~Tp~~l~~~l~~~~l~~~~~-~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~ 148 (440)
T 1yks_A 72 -HGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEFP 148 (440)
T ss_dssp -CCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSC
T ss_pred -ccCCccceeeecccchhHhhh-CcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhh
Confidence 001111223334444433333 2345677999999999987 322222222221111 357899999999976543211
Q ss_pred HHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecC
Q 015093 232 RKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHG 311 (413)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~ 311 (413)
.. ..+.. ......+.. ....+...+.. ..++++|||++++.++.+++.|++.++.+..+||
T Consensus 149 ~~--~~~~~--------------~~~~~~~~~--~~~~~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg 209 (440)
T 1yks_A 149 HS--NGEIE--------------DVQTDIPSE--PWNTGHDWILA-DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR 209 (440)
T ss_dssp CC--SSCEE--------------EEECCCCSS--CCSSSCHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS
T ss_pred hc--CCCee--------------EeeeccChH--HHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc
Confidence 10 01111 111111110 00111122222 2579999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE-------------------cCCCCChhHHHhhhcccCC
Q 015093 312 DMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN-------------------YDLPTQPENYLHRIGRSGR 372 (413)
Q Consensus 312 ~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~-------------------~~~~~s~~~~~Q~~GR~~R 372 (413)
.+|.++++.|++|+.+|||||+++++|+|+| +++||+ ++.|.+..+|.||+||+||
T Consensus 210 ----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR 284 (440)
T 1yks_A 210 ----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGR 284 (440)
T ss_dssp ----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSC
T ss_pred ----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCC
Confidence 3588999999999999999999999999999 999986 7779999999999999999
Q ss_pred C-CCcceEEEEe---ccccHHHHHHHHHHhccccccCCcc
Q 015093 373 F-GRKGVAINFV---TRDDDRMLADIQRFYNVVIEELPAN 408 (413)
Q Consensus 373 ~-g~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (413)
. |++|.|++++ ++.+...+..+...+.....++|..
T Consensus 285 ~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~ 324 (440)
T 1yks_A 285 NPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGG 324 (440)
T ss_dssp CTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGG
T ss_pred CCCCCceEEEEeccCChhhhhhhhhhhHHhcccccccccc
Confidence 7 6899999997 5677777777777665544455443
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=8.3e-38 Score=295.17 Aligned_cols=275 Identities=20% Similarity=0.216 Sum_probs=193.6
Q ss_pred hhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcch
Q 015093 69 RGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSV 148 (413)
Q Consensus 69 ~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (413)
.....+.+++++++++|||||||++|+++++..+... +.+++|++|+++|+.|+.+.++ +..+....+....
T Consensus 13 ~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~ 84 (459)
T 2z83_A 13 GSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--RLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQR 84 (459)
T ss_dssp --CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--TCCEEEEECSHHHHHHHHHHTT------TSCEEECC-----
T ss_pred HHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEECchHHHHHHHHHHhc------CceEeEEeccccc
Confidence 3345566788999999999999999999998776532 4589999999999999998876 2233332221110
Q ss_pred HHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhh-----hccCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 149 REDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEM-----LSRGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 149 ~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~-----~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
.......+.++|.+.+.+.+... ..+.++++||+||||+. ...++.. . .. .+...+++++|||+
T Consensus 85 -----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~---~-~~-~~~~~~~il~SAT~ 153 (459)
T 2z83_A 85 -----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIA---T-KV-ELGEAAAIFMTATP 153 (459)
T ss_dssp --------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHH---H-HH-HTTSCEEEEECSSC
T ss_pred -----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHH---H-Hh-ccCCccEEEEEcCC
Confidence 01234467788888887766654 45677999999999973 2222111 1 11 13578999999999
Q ss_pred ChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCC
Q 015093 224 PPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRD 303 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~ 303 (413)
+.....+... ..++..... ..+. .....+...+... .+++||||++++.++.+++.|++.+
T Consensus 154 ~~~~~~~~~~--~~pi~~~~~--------------~~~~--~~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~g 214 (459)
T 2z83_A 154 PGTTDPFPDS--NAPIHDLQD--------------EIPD--RAWSSGYEWITEY-AGKTVWFVASVKMGNEIAMCLQRAG 214 (459)
T ss_dssp TTCCCSSCCC--SSCEEEEEC--------------CCCS--SCCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTT
T ss_pred CcchhhhccC--CCCeEEecc--------------cCCc--chhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHHHHhcC
Confidence 8653211110 112211110 0000 0001111223333 5799999999999999999999999
Q ss_pred CeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE--------------------cCCCCChhHH
Q 015093 304 HTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN--------------------YDLPTQPENY 363 (413)
Q Consensus 304 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~--------------------~~~~~s~~~~ 363 (413)
+.+..+|++ +|.++++.|++|+.+|||||+++++|+|+|+ ++||+ ++.|.|..+|
T Consensus 215 ~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~ 289 (459)
T 2z83_A 215 KKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASA 289 (459)
T ss_dssp CCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHH
T ss_pred CcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHH
Confidence 999999985 6788899999999999999999999999999 99998 5689999999
Q ss_pred HhhhcccCCCCC-cceEEEEeccc
Q 015093 364 LHRIGRSGRFGR-KGVAINFVTRD 386 (413)
Q Consensus 364 ~Q~~GR~~R~g~-~g~~~~~~~~~ 386 (413)
+||+||+||.|+ +|.|++++...
T Consensus 290 ~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 290 AQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHhccccCCCCCCCCeEEEEEccc
Confidence 999999999987 89999999875
No 51
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.3e-37 Score=315.42 Aligned_cols=333 Identities=17% Similarity=0.120 Sum_probs=229.0
Q ss_pred CCCcHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCce
Q 015093 61 EKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVK 138 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~ 138 (413)
..|+|||.+++..+... .+++++++||+|||.+++..+...+..+. ..++||+||+ +|+.||.+++.+.. +..
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-~~rvLIVvP~-sLl~Qw~~E~~~~f---~l~ 226 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA-AERVLIIVPE-TLQHQWLVEMLRRF---NLR 226 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-CCCEEEECCT-TTHHHHHHHHHHHS---CCC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEeCH-HHHHHHHHHHHHHh---CCC
Confidence 37999999999887764 46999999999999999877776654443 3489999999 99999999997654 556
Q ss_pred EEEEECCcchHHHHH--HHhcCCcEEEeChHHHHHHHHc-CCCCCCCccEEEEccchhhhccCcH--HHHHHHHhhCCCC
Q 015093 139 VHACVGGTSVREDQR--ILSAGVHVVVGTPGRVFDMLRR-QSLRPDYIRMFVLDEADEMLSRGFK--DQIYDIFQHLPGK 213 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~--~~~~~~~Iii~T~~~l~~~~~~-~~~~~~~~~~iIiDE~h~~~~~~~~--~~~~~~~~~~~~~ 213 (413)
+..+.++........ ......+|+|+|++.+...... ..+....+++||+||||++.+.... .....+.......
T Consensus 227 v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~ 306 (968)
T 3dmq_A 227 FALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHV 306 (968)
T ss_dssp CEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTC
T ss_pred EEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcC
Confidence 666655432211110 0112468999999988642111 0112335799999999998654321 1112222222234
Q ss_pred ceEEEEeeeCChh----HHHHHHH----------------------------hcCC-C----------------------
Q 015093 214 IQVGVFSATMPPE----ALEITRK----------------------------FMNK-P---------------------- 238 (413)
Q Consensus 214 ~~~i~lSAT~~~~----~~~~~~~----------------------------~~~~-~---------------------- 238 (413)
.+++++||||..+ ....+.. .... +
T Consensus 307 ~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~ 386 (968)
T 3dmq_A 307 PGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLL 386 (968)
T ss_dssp SSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTG
T ss_pred CcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHH
Confidence 5699999999531 0010000 0000 0
Q ss_pred -----------------------------EEEEecC---CccccCCceEEEEE---------------------------
Q 015093 239 -----------------------------VRILVKR---DELTLEGIKQFHVN--------------------------- 259 (413)
Q Consensus 239 -----------------------------~~~~~~~---~~~~~~~~~~~~~~--------------------------- 259 (413)
..+.... ..+...........
T Consensus 387 ~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (968)
T 3dmq_A 387 QAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARD 466 (968)
T ss_dssp GGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHH
T ss_pred hcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhh
Confidence 0000000 00000001111110
Q ss_pred -----------------eCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhh-CCCeeEeecCCCCHHHHHHH
Q 015093 260 -----------------VDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRS-RDHTVSATHGDMDQNSRDII 321 (413)
Q Consensus 260 -----------------~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~ 321 (413)
......+...+..+++...+++++|||+++..++.+++.|.+ .|+.+..+||+++..+|.++
T Consensus 467 ~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~ 546 (968)
T 3dmq_A 467 MLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRA 546 (968)
T ss_dssp HHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHH
T ss_pred hcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHH
Confidence 011234678888888888889999999999999999999995 59999999999999999999
Q ss_pred HHHHhcCC--CeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHh
Q 015093 322 MREFRSGS--SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFY 398 (413)
Q Consensus 322 ~~~f~~~~--~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 398 (413)
++.|++|+ .+|||||+++++|+|+|++++||++++|+++..|.|++||++|.|+.|.|+++....+......+.+.+
T Consensus 547 l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 547 AAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp HHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred HHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 99999998 999999999999999999999999999999999999999999999988776665544333334444444
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=4.9e-37 Score=287.57 Aligned_cols=269 Identities=16% Similarity=0.161 Sum_probs=187.7
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL 155 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (413)
+|+++++++|||||||++++++++..+... +.+++|++||++|+.|+.+.++ +..+....++.. ...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~--g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~-----~~~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK--RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQ-----SER 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCcc-----ccC
Confidence 368899999999999999988888554432 4589999999999999887764 445555555422 112
Q ss_pred hcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhh-CCCCceEEEEeeeCChhHHHHHHHh
Q 015093 156 SAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQH-LPGKIQVGVFSATMPPEALEITRKF 234 (413)
Q Consensus 156 ~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~-~~~~~~~i~lSAT~~~~~~~~~~~~ 234 (413)
.....+.+.|.+.+.+.+.. ...+.++++||+||+|++ +..+......+... .+.+++++++|||+++.... +
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~----~ 141 (431)
T 2v6i_A 68 TGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA----F 141 (431)
T ss_dssp -CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS----S
T ss_pred CCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh----h
Confidence 23456778888888776666 455778999999999987 32222222222222 14578999999999864221 1
Q ss_pred cCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCC
Q 015093 235 MNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMD 314 (413)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~ 314 (413)
... ...+.......+. .....+...+... .++++|||++++.++.+++.|++.+..+..+||+
T Consensus 142 ~~~------------~~~i~~~~~~~~~--~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~-- 204 (431)
T 2v6i_A 142 PPS------------NSPIIDEETRIPD--KAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK-- 204 (431)
T ss_dssp CCC------------SSCCEEEECCCCS--SCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT--
T ss_pred cCC------------CCceeeccccCCH--HHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc--
Confidence 000 0011111001111 1112222334443 5689999999999999999999999999999997
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCE-----------------EEEcCCCCChhHHHhhhcccCCCCCc-
Q 015093 315 QNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL-----------------VINYDLPTQPENYLHRIGRSGRFGRK- 376 (413)
Q Consensus 315 ~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~-----------------vi~~~~~~s~~~~~Q~~GR~~R~g~~- 376 (413)
+|+++++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+..+|.||+||+||.|..
T Consensus 205 --~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~ 281 (431)
T 2v6i_A 205 --TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKL 281 (431)
T ss_dssp --THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred --cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCC
Confidence 578899999999999999999999999999 655 46677888999999999999999854
Q ss_pred ceEEEEe
Q 015093 377 GVAINFV 383 (413)
Q Consensus 377 g~~~~~~ 383 (413)
|.++++.
T Consensus 282 ~~~~~~~ 288 (431)
T 2v6i_A 282 GDIYAYS 288 (431)
T ss_dssp CCEEEEC
T ss_pred CeEEEEc
Confidence 4444444
No 53
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=8.2e-36 Score=286.67 Aligned_cols=312 Identities=15% Similarity=0.169 Sum_probs=216.0
Q ss_pred CCcHHHHhhhhhh----hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 62 KPSAIQQRGIVPF----CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~~----~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|+|||.++++.+ ..++++++.++||+|||++++..+.... ......++|||||+ +|+.||.++++++.. +.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~-~~~~~~~~LIv~P~-~l~~qw~~e~~~~~~--~~ 112 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAK-KENELTPSLVICPL-SVLKNWEEELSKFAP--HL 112 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHH-HTTCCSSEEEEECS-TTHHHHHHHHHHHCT--TS
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHH-hcCCCCCEEEEccH-HHHHHHHHHHHHHCC--Cc
Confidence 7999999999876 3577899999999999999876555443 33334589999994 689999999999875 45
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEE
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVG 217 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i 217 (413)
++...+|+... ......+|+|+||+.+..... +....+++||+||||++.+.. ....+.+..++ ..+.+
T Consensus 113 ~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~~~~l 181 (500)
T 1z63_A 113 RFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SKYRI 181 (500)
T ss_dssp CEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EEEEE
T ss_pred eEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-cCcEE
Confidence 66666665421 112357899999999865433 223357999999999986554 23344455554 45789
Q ss_pred EEeeeCChh-HHHH------------------------------------HHHhcCCCEEEEecCC---ccccCCceEEE
Q 015093 218 VFSATMPPE-ALEI------------------------------------TRKFMNKPVRILVKRD---ELTLEGIKQFH 257 (413)
Q Consensus 218 ~lSAT~~~~-~~~~------------------------------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 257 (413)
++||||..+ ..++ +...+........... ....+......
T Consensus 182 ~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~ 261 (500)
T 1z63_A 182 ALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETN 261 (500)
T ss_dssp EECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEE
T ss_pred EEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEE
Confidence 999999542 1111 1111111110000000 00111111121
Q ss_pred EEeCc--------------------------------------------------------cccHHHHHHHHHHhc--CC
Q 015093 258 VNVDK--------------------------------------------------------EEWKLDTLCDLYETL--AI 279 (413)
Q Consensus 258 ~~~~~--------------------------------------------------------~~~~~~~l~~~~~~~--~~ 279 (413)
..++. ...+...+.+++... .+
T Consensus 262 v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~ 341 (500)
T 1z63_A 262 VYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEG 341 (500)
T ss_dssp EEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTT
T ss_pred EEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccC
Confidence 11111 123444455555543 56
Q ss_pred CcEEEEEcCcccHHHHHHHHhhC-CCeeEeecCCCCHHHHHHHHHHHhcC-CCe-EEEEeCccccCCCCCCCCEEEEcCC
Q 015093 280 TQSVIFVNTRRKVDWLTDQMRSR-DHTVSATHGDMDQNSRDIIMREFRSG-SSR-VLITTDLLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 280 ~~~lIf~~~~~~a~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-vli~t~~~~~G~d~~~~~~vi~~~~ 356 (413)
.++||||++...++.+++.|.+. +..+..+||+++..+|.++++.|+++ ..+ +|++|+++++|+|+|.+++||++++
T Consensus 342 ~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~ 421 (500)
T 1z63_A 342 DKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDR 421 (500)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSC
T ss_pred CcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCC
Confidence 79999999999999999999885 89999999999999999999999988 455 7899999999999999999999999
Q ss_pred CCChhHHHhhhcccCCCCCcceE--EEEeccccH
Q 015093 357 PTQPENYLHRIGRSGRFGRKGVA--INFVTRDDD 388 (413)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~~ 388 (413)
|+++..+.|++||++|.|+.+.+ +.++.....
T Consensus 422 ~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ti 455 (500)
T 1z63_A 422 WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 455 (500)
T ss_dssp CSCC---CHHHHTTTTTTTTSCEEEEEEEETTSH
T ss_pred CCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCH
Confidence 99999999999999999976555 555555543
No 54
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=4.4e-35 Score=254.01 Aligned_cols=211 Identities=31% Similarity=0.423 Sum_probs=192.1
Q ss_pred cccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc-----cCcee
Q 015093 36 DEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-----SLQCQ 110 (413)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-----~~~~~ 110 (413)
..+..+|+.+++++.+.+.+.+.|+..|+++|.++++.+.+|+++++.+|||||||++|+++++..+... ..+++
T Consensus 25 p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~ 104 (242)
T 3fe2_A 25 PKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI 104 (242)
T ss_dssp CCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCS
T ss_pred CCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCE
Confidence 4556889999999999999999999999999999999999999999999999999999999999877532 24568
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEcc
Q 015093 111 ALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDE 190 (413)
Q Consensus 111 ~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE 190 (413)
++|++|+++|+.|+.+.++++....++.+..+.|+.........+..+++|+|+||+.|.+.+......+.+++++|+||
T Consensus 105 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDE 184 (242)
T 3fe2_A 105 CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDE 184 (242)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETT
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeC
Confidence 99999999999999999999988889999999999888777777777899999999999999988888888899999999
Q ss_pred chhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCC
Q 015093 191 ADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD 246 (413)
Q Consensus 191 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~ 246 (413)
||++.+.++...+..++..++++.+++++|||+++....+...++.++..+.....
T Consensus 185 ah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 185 ADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred HHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999999999999999999999999999999999999999999999988877554
No 55
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.2e-34 Score=245.35 Aligned_cols=202 Identities=39% Similarity=0.644 Sum_probs=183.9
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
.+|+++++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....+.+++|++|+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 46899999999999999999999999999999999999999999999999999999999988876666678999999999
Q ss_pred HHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC
Q 015093 120 LAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG 198 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~ 198 (413)
|+.|+.+.++++.... +..+....|+.............++|+|+||+.+...+......+.+++++|+||||++.+.+
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 162 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD 162 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC
Confidence 9999999999998776 788888999888766666666788999999999999998877778889999999999998888
Q ss_pred cHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEE
Q 015093 199 FKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRI 241 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~ 241 (413)
+...+..++..++++.+++++|||+++....+...++.+|..+
T Consensus 163 ~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 163 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred cHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999899999999999999999999999888654
No 56
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=5.3e-35 Score=250.90 Aligned_cols=215 Identities=60% Similarity=0.911 Sum_probs=183.4
Q ss_pred ccccccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCcee
Q 015093 31 FFVSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQ 110 (413)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~ 110 (413)
....+.....+|+.+++++.+.+.+..+|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....+.+
T Consensus 5 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~ 84 (224)
T 1qde_A 5 IQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQ 84 (224)
T ss_dssp CCBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCC
T ss_pred cccccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCce
Confidence 34456667788999999999999999999999999999999999999999999999999999999999988876666679
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEcc
Q 015093 111 ALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDE 190 (413)
Q Consensus 111 ~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE 190 (413)
++|++|+++|+.|+.+.++++....+..+....|+.........+. .++|+|+||+.+...+......+.+++++|+||
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDE 163 (224)
T 1qde_A 85 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 163 (224)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred EEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEcC
Confidence 9999999999999999999998888889999888876555444433 389999999999999988877788899999999
Q ss_pred chhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCC
Q 015093 191 ADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD 246 (413)
Q Consensus 191 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~ 246 (413)
||++.+.++...+..++..++...+++++|||+++....+...++.++..+.....
T Consensus 164 ah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 164 ADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred hhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99998888999999999999989999999999999999999999999887665443
No 57
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=252.12 Aligned_cols=208 Identities=33% Similarity=0.521 Sum_probs=188.7
Q ss_pred cccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc
Q 015093 36 DEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA 115 (413)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~ 115 (413)
.+...+|+++++++.+.+.++.+|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....+.+++|++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~ 118 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLT 118 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEEC
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEe
Confidence 34568899999999999999999999999999999999999999999999999999999999998877666566899999
Q ss_pred ccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-CCCCCCCccEEEEccchhh
Q 015093 116 PTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR-QSLRPDYIRMFVLDEADEM 194 (413)
Q Consensus 116 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~-~~~~~~~~~~iIiDE~h~~ 194 (413)
|+++|+.|+.+.++++....+..+..+.|+............+++|+|+||++|.+.+.. ....+..++++|+||||++
T Consensus 119 Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l 198 (249)
T 3ber_A 119 PTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRI 198 (249)
T ss_dssp SSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhh
Confidence 999999999999999988888999999999887766666677899999999999998876 4556788999999999999
Q ss_pred hccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEe
Q 015093 195 LSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILV 243 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~ 243 (413)
.+.++...+..++..++.+.+++++|||+++....+.+.++.+|..+..
T Consensus 199 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 199 LNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 9989999999999999989999999999999999999999999887654
No 58
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=5e-35 Score=252.71 Aligned_cols=215 Identities=68% Similarity=1.038 Sum_probs=178.4
Q ss_pred CcccccccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCc
Q 015093 29 QDFFVSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQ 108 (413)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~ 108 (413)
......+.++..+|+++++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....+
T Consensus 19 ~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~ 98 (237)
T 3bor_A 19 GVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKE 98 (237)
T ss_dssp --------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCS
T ss_pred CcccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCC
Confidence 34444566677889999999999999999999999999999999999999999999999999999999999988765556
Q ss_pred eeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhc-CCcEEEeChHHHHHHHHcCCCCCCCccEEE
Q 015093 109 CQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSA-GVHVVVGTPGRVFDMLRRQSLRPDYIRMFV 187 (413)
Q Consensus 109 ~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Iii~T~~~l~~~~~~~~~~~~~~~~iI 187 (413)
.+++|++|+++|+.|+.+.+++++...+..+....|+............ .++|+|+||+.+.+.+......+.++++||
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lV 178 (237)
T 3bor_A 99 TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFV 178 (237)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEE
T ss_pred ceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEE
Confidence 7999999999999999999999988778888888888765554433333 489999999999999988777788899999
Q ss_pred EccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEe
Q 015093 188 LDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILV 243 (413)
Q Consensus 188 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~ 243 (413)
+||||++.+.++...+..+++.++...+++++|||+++....+...++.+|..+..
T Consensus 179 iDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 179 LDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp EESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred ECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 99999998888999999999999989999999999999999999999998876644
No 59
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1e-34 Score=248.01 Aligned_cols=206 Identities=33% Similarity=0.514 Sum_probs=183.1
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
.+|+++++++.+.+.+...|+..|+++|.++++.+.+++++++++|||+|||++++++++..+.....+.+++|++|+++
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 83 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRE 83 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHH
Confidence 56889999999999999999999999999999999999999999999999999999999998876666679999999999
Q ss_pred HHHHHHHHHHHhhccc----CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 120 LAQQIEKVMRALGDYM----GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
|+.|+.+.++++.... +..+..+.|+.............++|+|+||+.+.+.+......+..++++|+||||++.
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~ 163 (219)
T 1q0u_A 84 LATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLML 163 (219)
T ss_dssp HHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHh
Confidence 9999999999988766 678888888876554433334567999999999999998877777889999999999999
Q ss_pred ccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecC
Q 015093 196 SRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKR 245 (413)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~ 245 (413)
+.++...+..++..++.+.+++++|||+++...++.+.++.+|..+....
T Consensus 164 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 164 DMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred hhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 88899999999999988999999999999999999999999998765543
No 60
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=5.7e-34 Score=245.06 Aligned_cols=205 Identities=41% Similarity=0.630 Sum_probs=180.9
Q ss_pred ccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 37 EVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
....+|+.+++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++|+++++..+.....+.+++|++|
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 100 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAP 100 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 34577999999999999999999999999999999999999999999999999999999999988866655679999999
Q ss_pred cHHHHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 117 TRELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
+++|+.|+.+.++++.... ++++..+.|+.....+.... ..++|+|+||+.+...+......+.+++++|+||||++.
T Consensus 101 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~ 179 (230)
T 2oxc_A 101 TREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLL 179 (230)
T ss_dssp SHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhh
Confidence 9999999999999987665 78888999988766655444 468999999999999988877777889999999999998
Q ss_pred ccC-cHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEE
Q 015093 196 SRG-FKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRIL 242 (413)
Q Consensus 196 ~~~-~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~ 242 (413)
+.+ +...+..++..++...+++++|||+++........++.++..+.
T Consensus 180 ~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 180 EEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp STTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred cCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 876 89999999999998899999999999998888888888887654
No 61
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=3.8e-34 Score=250.03 Aligned_cols=217 Identities=32% Similarity=0.513 Sum_probs=185.0
Q ss_pred cccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc---------Cc
Q 015093 38 VYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES---------LQ 108 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~---------~~ 108 (413)
+..+|+++++++.+.+.+...|+..|+++|.++++.+.+++++++++|||+|||++++++++..+.... .+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 457799999999999999999999999999999999999999999999999999999999988765322 34
Q ss_pred eeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEE
Q 015093 109 CQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVL 188 (413)
Q Consensus 109 ~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIi 188 (413)
++++|++|+++|+.|+.+.++++....+..+..+.|+............+++|+|+||+.|...+......+.+++++|+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 58999999999999999999999888888899999988877776666778899999999999999888777888999999
Q ss_pred ccchhhhccCcHHHHHHHHhh--CCC--CceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCce
Q 015093 189 DEADEMLSRGFKDQIYDIFQH--LPG--KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIK 254 (413)
Q Consensus 189 DE~h~~~~~~~~~~~~~~~~~--~~~--~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (413)
||||++.+.++...+..++.. .+. +.+++++|||+++....+...++.++..+.........+.+.
T Consensus 181 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~ 250 (253)
T 1wrb_A 181 DEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIK 250 (253)
T ss_dssp ETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC----------
T ss_pred eCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCce
Confidence 999999988899999999885 343 678999999999999999999999998887766554444433
No 62
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=6.3e-34 Score=276.70 Aligned_cols=282 Identities=17% Similarity=0.206 Sum_probs=206.2
Q ss_pred hhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHH
Q 015093 73 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQ 152 (413)
Q Consensus 73 ~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (413)
..+++++++++||||||||..++..+. ... ..+|++|+++|+.|+++.+++. +..+..++|+......
T Consensus 151 r~l~rk~vlv~apTGSGKT~~al~~l~----~~~---~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv~- 218 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTYHAIQKYF----SAK---SGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTVQ- 218 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHHHHHHHHH----HSS---SEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECCS-
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHH----hcC---CeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEec-
Confidence 345788999999999999985443333 222 4599999999999999998885 6788888888653100
Q ss_pred HHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCC-CCceEEEEeeeCChhHHHHH
Q 015093 153 RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLP-GKIQVGVFSATMPPEALEIT 231 (413)
Q Consensus 153 ~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~lSAT~~~~~~~~~ 231 (413)
.-....+++++|++.+. ....++++|+||+|++.+.++...+..++..++ ...+++++|||. +....+.
T Consensus 219 -TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~ 288 (677)
T 3rc3_A 219 -PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLVMELM 288 (677)
T ss_dssp -TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHHHHHH
T ss_pred -CCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH-HHHHHHH
Confidence 00012578888876542 235579999999999988889988888888887 678899999995 2333333
Q ss_pred HHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecC
Q 015093 232 RKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHG 311 (413)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~ 311 (413)
.. .+....+...... .... ..... + ..+.... +..+|||++++.++.+++.|.+.++.+..+||
T Consensus 289 ~~-~~~~~~v~~~~r~---~~l~---~~~~~----l----~~l~~~~-~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG 352 (677)
T 3rc3_A 289 YT-TGEEVEVRDYKRL---TPIS---VLDHA----L----ESLDNLR-PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYG 352 (677)
T ss_dssp HH-HTCCEEEEECCCS---SCEE---ECSSC----C----CSGGGCC-TTEEEECSSHHHHHHHHHHHHHTTCCCEEECT
T ss_pred Hh-cCCceEEEEeeec---chHH---HHHHH----H----HHHHhcC-CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeec
Confidence 33 2344433221110 0100 00000 0 0111222 35588899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhc--CCCeEEEEeCccccCCCCCCCCEEEEcCC--------------CCChhHHHhhhcccCCCCC
Q 015093 312 DMDQNSRDIIMREFRS--GSSRVLITTDLLARGIDVQQVSLVINYDL--------------PTQPENYLHRIGRSGRFGR 375 (413)
Q Consensus 312 ~~~~~~r~~~~~~f~~--~~~~vli~t~~~~~G~d~~~~~~vi~~~~--------------~~s~~~~~Q~~GR~~R~g~ 375 (413)
++++.+|.++++.|++ |..+|||||+++++|+|+ .++.||+++. |.|..+|.||+||+||.|.
T Consensus 353 ~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~ 431 (677)
T 3rc3_A 353 SLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSS 431 (677)
T ss_dssp TSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTS
T ss_pred cCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCC
Confidence 9999999999999999 889999999999999999 8999999998 7799999999999999986
Q ss_pred c---ceEEEEeccccHHHHHHH
Q 015093 376 K---GVAINFVTRDDDRMLADI 394 (413)
Q Consensus 376 ~---g~~~~~~~~~~~~~~~~~ 394 (413)
. |.|++++.. +...+..+
T Consensus 432 ~g~~G~v~~l~~~-d~~~~~~~ 452 (677)
T 3rc3_A 432 RFKEGEVTTMNHE-DLSLLKEI 452 (677)
T ss_dssp SCSSEEEEESSTT-HHHHHHHH
T ss_pred CCCCEEEEEEecc-hHHHHHHH
Confidence 4 666665543 33333333
No 63
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=7e-34 Score=244.45 Aligned_cols=207 Identities=30% Similarity=0.430 Sum_probs=178.5
Q ss_pred ccccccCccC-CCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc------cC
Q 015093 35 YDEVYDSFDS-MGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE------SL 107 (413)
Q Consensus 35 ~~~~~~~~~~-~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~------~~ 107 (413)
..++..+|++ +++++.+.+.+.+.|+..|+++|.++++.+.+|+++++.+|||+|||++|+++++..+... ..
T Consensus 14 ~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~ 93 (228)
T 3iuy_A 14 IPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRN 93 (228)
T ss_dssp CCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------C
T ss_pred CCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccC
Confidence 3445567777 7999999999999999999999999999999999999999999999999999998876432 24
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEE
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFV 187 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iI 187 (413)
+++++|++|+++|+.|+.+.++++. ..+..+..+.|+............+++|+|+||+.+.+.+......+.+++++|
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lV 172 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLV 172 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEE
Confidence 5689999999999999999999986 457788888888877766666777899999999999999988888888899999
Q ss_pred EccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEE
Q 015093 188 LDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRIL 242 (413)
Q Consensus 188 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~ 242 (413)
+||||++.+.++...+..++..++.+.+++++|||+++....+...++.+|..+.
T Consensus 173 iDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 173 IDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp ECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999999999999999999999999999999999999999887654
No 64
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-34 Score=285.51 Aligned_cols=331 Identities=18% Similarity=0.208 Sum_probs=232.0
Q ss_pred CCcHHHHhhhhhhh----CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 62 KPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~----~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|++||.+++..+. .++++|+..+||+|||++++..+...+.......++||||| .+++.||.+++.+++. +.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~ 312 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAP--DL 312 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHST--TC
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCC--Cc
Confidence 79999999998665 68889999999999999987777665544444558999999 6789999999999975 56
Q ss_pred eEEEEECCcchHHHHHH------------HhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHH
Q 015093 138 KVHACVGGTSVREDQRI------------LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYD 205 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~------------~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~ 205 (413)
.+...+|+......... .....+|+|+|++++...... +....+++||+||||++.+.. .....
T Consensus 313 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s~~~~ 388 (800)
T 3mwy_W 313 NCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--SSLYE 388 (800)
T ss_dssp CEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--SHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--hHHHH
Confidence 67777776654333221 123568999999999764332 112347899999999985543 34445
Q ss_pred HHhhCCCCceEEEEeeeCChh----HHHHHHHhcCC-----------------------------CEEEEecCCc--ccc
Q 015093 206 IFQHLPGKIQVGVFSATMPPE----ALEITRKFMNK-----------------------------PVRILVKRDE--LTL 250 (413)
Q Consensus 206 ~~~~~~~~~~~i~lSAT~~~~----~~~~~~~~~~~-----------------------------~~~~~~~~~~--~~~ 250 (413)
.+..+. ....+++||||..+ +..++..+... +......... ...
T Consensus 389 ~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~L 467 (800)
T 3mwy_W 389 SLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSL 467 (800)
T ss_dssp HHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTS
T ss_pred HHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhcc
Confidence 555564 45678899999421 11111111100 0000000000 001
Q ss_pred CCceEEEEEeCc--------------------------------------------------------------------
Q 015093 251 EGIKQFHVNVDK-------------------------------------------------------------------- 262 (413)
Q Consensus 251 ~~~~~~~~~~~~-------------------------------------------------------------------- 262 (413)
+........+..
T Consensus 468 P~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~ 547 (800)
T 3mwy_W 468 PSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENV 547 (800)
T ss_dssp CCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHH
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHH
Confidence 111111111100
Q ss_pred ------cccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCC---e
Q 015093 263 ------EEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSS---R 331 (413)
Q Consensus 263 ------~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~ 331 (413)
...+...+..++... .+.++|||++....+..+.+.|...|+.+..++|+++..+|.++++.|+++.. .
T Consensus 548 ~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v 627 (800)
T 3mwy_W 548 LRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFV 627 (800)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCC
T ss_pred HHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceE
Confidence 123455566666654 45699999999999999999999999999999999999999999999998654 4
Q ss_pred EEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCc--ceEEEEeccccH--HHHHHHHHHhcc
Q 015093 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GVAINFVTRDDD--RMLADIQRFYNV 400 (413)
Q Consensus 332 vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~~~--~~~~~~~~~~~~ 400 (413)
+|++|.++++|+|++.+++||++++++++..+.|++||++|.|+. ..++.+++.... ..+....+.+..
T Consensus 628 ~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l 700 (800)
T 3mwy_W 628 FLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMIL 700 (800)
T ss_dssp EEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTS
T ss_pred EEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999875 445666666643 344444444443
No 65
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=2.4e-33 Score=237.65 Aligned_cols=201 Identities=38% Similarity=0.554 Sum_probs=179.7
Q ss_pred CccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc---cCceeEEEEccc
Q 015093 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE---SLQCQALVLAPT 117 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~---~~~~~~lvl~P~ 117 (413)
+|+++++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+... ..+++++|++|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 58889999999999999999999999999999999999999999999999999999999887542 335689999999
Q ss_pred HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc
Q 015093 118 RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR 197 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~ 197 (413)
++|+.|+.+.++++... .++..+.|+............+++|+|+||+.+.+.+......+.+++++|+||||++.+.
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 159 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSM 159 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhcc
Confidence 99999999999998764 6777888888776666666667899999999999999887777888999999999999888
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEe
Q 015093 198 GFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILV 243 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~ 243 (413)
++...+..++...+.+.+++++|||+++....+.+.++.+|..+..
T Consensus 160 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 160 GFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred chHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 8999999999999889999999999999999999999998876643
No 66
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.1e-33 Score=240.14 Aligned_cols=204 Identities=42% Similarity=0.637 Sum_probs=180.0
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
..+|+++++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....+.+++|++|++
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 92 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 92 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCH
Confidence 35699999999999999999999999999999999999999999999999999999999998887665566899999999
Q ss_pred HHHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc
Q 015093 119 ELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILS-AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS 196 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 196 (413)
+|+.|+.+.++++.... +.++..+.|+.....+...+. ..++|+|+||+.+...+......+.+++++|+||||++.+
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 172 (220)
T 1t6n_A 93 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 172 (220)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHS
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhc
Confidence 99999999999998765 788889998877665554443 4569999999999999988877788899999999999876
Q ss_pred -cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEE
Q 015093 197 -RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRIL 242 (413)
Q Consensus 197 -~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~ 242 (413)
.++...+..++...+.+.+++++|||+++...++.+.++.+|..+.
T Consensus 173 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 173 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp SHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred ccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 4677888888888888899999999999999999999998887653
No 67
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.6e-33 Score=271.64 Aligned_cols=320 Identities=17% Similarity=0.156 Sum_probs=218.4
Q ss_pred CCcHHHHhhhhhhh---------CCCcEEEeCCCCCchhHHHHHHHHHhccccc----CceeEEEEcccHHHHHHHHHHH
Q 015093 62 KPSAIQQRGIVPFC---------KGLDVIQQAQSGTGKTATFCSGILQQLDYES----LQCQALVLAPTRELAQQIEKVM 128 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~---------~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~----~~~~~lvl~P~~~l~~q~~~~~ 128 (413)
.|+|||.+++..+. .++.+|+..+||+|||++++..+...+.... ...++|||||+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 69999999998874 3456999999999999998877766554332 23469999997 8899999999
Q ss_pred HHhhcccCceEEEEECCcchHHHHHH---Hh-----cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcH
Q 015093 129 RALGDYMGVKVHACVGGTSVREDQRI---LS-----AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFK 200 (413)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~ 200 (413)
.++... ...+..+.++......... .. ...+|+|+|++.+..... .+....+++||+||||++.+.. .
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~-~ 209 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD-N 209 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC-H
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh-h
Confidence 999765 4455555555433222111 11 146899999999875432 2334468999999999986543 2
Q ss_pred HHHHHHHhhCCCCceEEEEeeeCChhH-------------------HHHHHHhcC-------------------------
Q 015093 201 DQIYDIFQHLPGKIQVGVFSATMPPEA-------------------LEITRKFMN------------------------- 236 (413)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~lSAT~~~~~-------------------~~~~~~~~~------------------------- 236 (413)
.....+..+. ..+.+++||||..+. ..+...+..
T Consensus 210 -~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L 287 (644)
T 1z3i_X 210 -QTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQEL 287 (644)
T ss_dssp -HHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHH
T ss_pred -HHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHH
Confidence 2233333443 456899999995321 000000000
Q ss_pred ----CCEEEEecCCc--cccCCceEEEEEeC-------------------------------------------------
Q 015093 237 ----KPVRILVKRDE--LTLEGIKQFHVNVD------------------------------------------------- 261 (413)
Q Consensus 237 ----~~~~~~~~~~~--~~~~~~~~~~~~~~------------------------------------------------- 261 (413)
.+....-.... ...+........+.
T Consensus 288 ~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~ 367 (644)
T 1z3i_X 288 ISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIY 367 (644)
T ss_dssp HHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHH
Confidence 00000000000 00011111111000
Q ss_pred ----------------------------ccccHHHHHHHHHHh---cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeec
Q 015093 262 ----------------------------KEEWKLDTLCDLYET---LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATH 310 (413)
Q Consensus 262 ----------------------------~~~~~~~~l~~~~~~---~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~ 310 (413)
....+...+..++.. ..+.++|||++....++.+.+.|...++.+..+|
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~ 447 (644)
T 1z3i_X 368 EKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLD 447 (644)
T ss_dssp HHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEe
Confidence 012233334444433 3567999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCe---EEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcc--eEEEEecc
Q 015093 311 GDMDQNSRDIIMREFRSGSSR---VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG--VAINFVTR 385 (413)
Q Consensus 311 ~~~~~~~r~~~~~~f~~~~~~---vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g--~~~~~~~~ 385 (413)
|+++..+|.++++.|+++... +|++|.++++|+|++.+++||++++++++..+.|++||++|.|+.. .++.+++.
T Consensus 448 G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~ 527 (644)
T 1z3i_X 448 GTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLST 527 (644)
T ss_dssp SSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEET
T ss_pred CCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEEC
Confidence 999999999999999998754 8899999999999999999999999999999999999999999765 45556666
Q ss_pred ccH
Q 015093 386 DDD 388 (413)
Q Consensus 386 ~~~ 388 (413)
...
T Consensus 528 ~ti 530 (644)
T 1z3i_X 528 GTI 530 (644)
T ss_dssp TSH
T ss_pred CCH
Confidence 543
No 68
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=5.6e-33 Score=240.11 Aligned_cols=206 Identities=29% Similarity=0.472 Sum_probs=180.3
Q ss_pred cccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc----cCceeEEE
Q 015093 38 VYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE----SLQCQALV 113 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~----~~~~~~lv 113 (413)
...+|+++++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+... ..+.+++|
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~li 102 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLI 102 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEE
Confidence 45679999999999999999999999999999999999999999999999999999999998876431 23568999
Q ss_pred EcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC-CCCCCCccEEEEccch
Q 015093 114 LAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ-SLRPDYIRMFVLDEAD 192 (413)
Q Consensus 114 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~-~~~~~~~~~iIiDE~h 192 (413)
++|+++|+.|+.+.+++++...+..+..++|+.......... ..++|+|+||+.+...+... ...+.+++++|+||||
T Consensus 103 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 181 (236)
T 2pl3_A 103 ISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD 181 (236)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHH
T ss_pred EeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChH
Confidence 999999999999999999888888999999988766555444 46899999999999888764 4567789999999999
Q ss_pred hhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEec
Q 015093 193 EMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVK 244 (413)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~ 244 (413)
++.+.++...+..++..++...+++++|||+++....+.+.++.+|..+...
T Consensus 182 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 182 RILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 9999889999999999999899999999999999999999999988876543
No 69
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=4.7e-32 Score=256.52 Aligned_cols=322 Identities=17% Similarity=0.205 Sum_probs=233.6
Q ss_pred CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|. .|++.|.-+.-.+..|+ |..+.||+|||+++.+|++-.... +..+.|++|+..||.|-.+.+..+...+|+
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---G~~vhVvT~ndyLA~rdae~m~~l~~~Lgl 145 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI---GKGVHLVTVNDYLARRDALWMGPVYLFLGL 145 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc---CCceEEEeccHHHHHhHHHHHHHHHHHhCC
Confidence 354 79999999998888887 999999999999999988643333 347999999999999999999999999999
Q ss_pred eEEEEECCc------------------------------------------------chHHHHHHHhcCCcEEEeChHHH
Q 015093 138 KVHACVGGT------------------------------------------------SVREDQRILSAGVHVVVGTPGRV 169 (413)
Q Consensus 138 ~~~~~~~~~------------------------------------------------~~~~~~~~~~~~~~Iii~T~~~l 169 (413)
+++++.... ......+...-.|+|+++|...|
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~Ef 225 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNEF 225 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHHH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCcch
Confidence 999988721 00011111122479999999988
Q ss_pred H-HHHHcC------CCCCCCccEEEEccchhhh-ccC---------------cHHHHHHHHhhC----------------
Q 015093 170 F-DMLRRQ------SLRPDYIRMFVLDEADEML-SRG---------------FKDQIYDIFQHL---------------- 210 (413)
Q Consensus 170 ~-~~~~~~------~~~~~~~~~iIiDE~h~~~-~~~---------------~~~~~~~~~~~~---------------- 210 (413)
- +.++.. ......+.+.|+||++.++ +.. ....+..+...+
T Consensus 226 gFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v~ 305 (822)
T 3jux_A 226 GFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTII 305 (822)
T ss_dssp HHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCEE
T ss_pred hhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCeEE
Confidence 4 444422 2224557899999999754 210 000111111110
Q ss_pred ----------------------------------------CCC-------------------------------------
Q 015093 211 ----------------------------------------PGK------------------------------------- 213 (413)
Q Consensus 211 ----------------------------------------~~~------------------------------------- 213 (413)
..+
T Consensus 306 lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaK 385 (822)
T 3jux_A 306 LTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAK 385 (822)
T ss_dssp ECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHHH
T ss_pred ECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHHHH
Confidence 000
Q ss_pred ------------------------ceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHH
Q 015093 214 ------------------------IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDT 269 (413)
Q Consensus 214 ------------------------~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (413)
.++.+||||.......+...|. -.+... +...+................+...
T Consensus 386 Egv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~-l~vv~I--Ptnkp~~R~d~~d~vy~t~~eK~~a 462 (822)
T 3jux_A 386 EGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYG-MEVVVI--PTHKPMIRKDHDDLVFRTQKEKYEK 462 (822)
T ss_dssp HSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSC-CCEEEC--CCSSCCCCEECCCEEESSHHHHHHH
T ss_pred cCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhC-CeEEEE--CCCCCcceeecCcEEEecHHHHHHH
Confidence 4799999999887766655554 333222 2222222222212233444667788
Q ss_pred HHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCC-
Q 015093 270 LCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQ- 346 (413)
Q Consensus 270 l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~- 346 (413)
+...+... .+.++||||+|++.++.+++.|++.|+++..+||+....++..+...++.| .|+|||+++++|+|++
T Consensus 463 l~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~l 540 (822)
T 3jux_A 463 IVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKL 540 (822)
T ss_dssp HHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCC
T ss_pred HHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccC
Confidence 88777653 567999999999999999999999999999999996666665555666555 6999999999999998
Q ss_pred -------CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 347 -------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 347 -------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
+..+||+++.|.|...|.|++||+||.|.+|.+++|++..|..+
T Consensus 541 g~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~ 591 (822)
T 3jux_A 541 GPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLL 591 (822)
T ss_dssp CTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHH
T ss_pred CcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHH
Confidence 66799999999999999999999999999999999999887543
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=3.2e-33 Score=282.71 Aligned_cols=310 Identities=14% Similarity=0.116 Sum_probs=206.6
Q ss_pred CCcHHHHhhhhhhhC--------------CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHH
Q 015093 62 KPSAIQQRGIVPFCK--------------GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKV 127 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~--------------~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~ 127 (413)
.||++|..+++.+.. +++++++++||||||+++ +++...+.......++||+||+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 699999999998765 367999999999999998 44445444333345899999999999999999
Q ss_pred HHHhhcccCceEEEEECCcchHHHHHHH-hcCCcEEEeChHHHHHHHHcCC-C-CCCCccEEEEccchhhhccCcHHHHH
Q 015093 128 MRALGDYMGVKVHACVGGTSVREDQRIL-SAGVHVVVGTPGRVFDMLRRQS-L-RPDYIRMFVLDEADEMLSRGFKDQIY 204 (413)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~T~~~l~~~~~~~~-~-~~~~~~~iIiDE~h~~~~~~~~~~~~ 204 (413)
+.++.... ..++.+.......+ ....+|+|+|+++|...+.... . .+..+.+||+||||++... ....
T Consensus 350 f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~---~~~~ 420 (1038)
T 2w00_A 350 YQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG---EAQK 420 (1038)
T ss_dssp HHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH---HHHH
T ss_pred HHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch---HHHH
Confidence 99876431 12333333333333 3468999999999998776432 1 2345789999999997532 3345
Q ss_pred HHHhhCCCCceEEEEeeeCChhHH----HHHHHhcCCCEEEEecCC----ccccCCceEEEEEe-----------C----
Q 015093 205 DIFQHLPGKIQVGVFSATMPPEAL----EITRKFMNKPVRILVKRD----ELTLEGIKQFHVNV-----------D---- 261 (413)
Q Consensus 205 ~~~~~~~~~~~~i~lSAT~~~~~~----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-----------~---- 261 (413)
.+...++ +.+++++||||..... .....+++.++....... .... .+...+... +
T Consensus 421 ~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~-p~~v~y~~v~~~~~~~~~e~d~~~~ 498 (1038)
T 2w00_A 421 NLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVL-KFKVDYNDVRPQFKSLETETDEKKL 498 (1038)
T ss_dssp HHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSC-CEEEEECCCCGGGHHHHTCCCHHHH
T ss_pred HHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcC-CeEEEEEeccchhhhccccccHHHH
Confidence 6666776 4789999999974321 122334444433221110 0000 000000000 0
Q ss_pred ---------ccccHHHHHHH-HHH---hc--------CCCcEEEEEcCcccHHHHHHHHhhCC------------Cee-E
Q 015093 262 ---------KEEWKLDTLCD-LYE---TL--------AITQSVIFVNTRRKVDWLTDQMRSRD------------HTV-S 307 (413)
Q Consensus 262 ---------~~~~~~~~l~~-~~~---~~--------~~~~~lIf~~~~~~a~~l~~~l~~~~------------~~~-~ 307 (413)
........+.. ++. .. .+.++||||++++.|..+++.|.+.+ .++ .
T Consensus 499 ~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~av 578 (1038)
T 2w00_A 499 SAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIAT 578 (1038)
T ss_dssp HHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEE
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEE
Confidence 01112222222 222 11 23579999999999999999997643 444 4
Q ss_pred eecCC----------C----------CH-----------------------------HHHHHHHHHHhcCCCeEEEEeCc
Q 015093 308 ATHGD----------M----------DQ-----------------------------NSRDIIMREFRSGSSRVLITTDL 338 (413)
Q Consensus 308 ~~~~~----------~----------~~-----------------------------~~r~~~~~~f~~~~~~vli~t~~ 338 (413)
.+|+. + ++ .+|..+++.|++|+++|||+|++
T Consensus 579 v~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~ 658 (1038)
T 2w00_A 579 IFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGM 658 (1038)
T ss_dssp ECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESST
T ss_pred EEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcch
Confidence 45542 1 21 13778899999999999999999
Q ss_pred cccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCc----ceEEEEec
Q 015093 339 LARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK----GVAINFVT 384 (413)
Q Consensus 339 ~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~----g~~~~~~~ 384 (413)
+.+|+|+|.+ +++.++.|.+...|+|++||++|.++. |.++.|+.
T Consensus 659 lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 659 FLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp TSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 9999999999 567788999999999999999998753 55554443
No 71
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.8e-33 Score=242.21 Aligned_cols=199 Identities=30% Similarity=0.486 Sum_probs=174.8
Q ss_pred cCccCCC--CCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc----cCceeEEE
Q 015093 40 DSFDSMG--LKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE----SLQCQALV 113 (413)
Q Consensus 40 ~~~~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~----~~~~~~lv 113 (413)
.+|+.++ +++.+.+.+...|+..|+++|.++++.+..++++++++|||||||++|+++++..+... ..+.+++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~li 131 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLI 131 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEE
Confidence 4566665 99999999999999999999999999999999999999999999999999999876542 23568999
Q ss_pred EcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCC-CCCCCccEEEEccch
Q 015093 114 LAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQS-LRPDYIRMFVLDEAD 192 (413)
Q Consensus 114 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~-~~~~~~~~iIiDE~h 192 (413)
++|+++|+.|+.+.+++++...+..+..+.|+.........+..+++|+|+||+++...+.... ..+.++++||+||||
T Consensus 132 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah 211 (262)
T 3ly5_A 132 LSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD 211 (262)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH
Confidence 9999999999999999999888899999999988777766666778999999999998887653 667889999999999
Q ss_pred hhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCC
Q 015093 193 EMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKP 238 (413)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~ 238 (413)
++.+.++...+..++..++...+++++|||+++....+.+.++..+
T Consensus 212 ~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 212 RILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp HHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred HHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999888887654
No 72
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=8.7e-33 Score=246.18 Aligned_cols=203 Identities=37% Similarity=0.592 Sum_probs=179.6
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
..+|+.+++++.+.+.+..+||..|+++|.++++.++.+ +++++++|||||||++|+++++..+.....++++||++|
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~P 170 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 170 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred cCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcC
Confidence 578999999999999999999999999999999999997 899999999999999999999999887776779999999
Q ss_pred cHHHHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-CCCCCCCccEEEEccchhh
Q 015093 117 TRELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR-QSLRPDYIRMFVLDEADEM 194 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~-~~~~~~~~~~iIiDE~h~~ 194 (413)
+++|+.|+.+.++++.... ++.+....++....... ...++|+|+||++|.+++.+ ..+.+.+++++|+||||++
T Consensus 171 treLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l 247 (300)
T 3fmo_B 171 TYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 247 (300)
T ss_dssp SHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHH
T ss_pred cHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHH
Confidence 9999999999999988764 67788887776533221 34678999999999999966 4566788999999999998
Q ss_pred hc-cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEec
Q 015093 195 LS-RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVK 244 (413)
Q Consensus 195 ~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~ 244 (413)
.+ .++...+..+++.++..+|++++|||+++....+...++.+|..+...
T Consensus 248 ~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 248 IATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred hhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 87 678888999999999999999999999999999999999999877654
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.1e-32 Score=233.88 Aligned_cols=210 Identities=26% Similarity=0.452 Sum_probs=174.0
Q ss_pred ccccCccCC----CCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc-cCceeE
Q 015093 37 EVYDSFDSM----GLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-SLQCQA 111 (413)
Q Consensus 37 ~~~~~~~~~----~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-~~~~~~ 111 (413)
.+..+|+.+ ++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++|+++++..+... ..+.++
T Consensus 22 ~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~ 101 (245)
T 3dkp_A 22 DPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRA 101 (245)
T ss_dssp CCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCE
T ss_pred CcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceE
Confidence 344566665 899999999999999999999999999999999999999999999999999999877542 345689
Q ss_pred EEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHH-HHHhcCCcEEEeChHHHHHHHHcC--CCCCCCccEEEE
Q 015093 112 LVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQ-RILSAGVHVVVGTPGRVFDMLRRQ--SLRPDYIRMFVL 188 (413)
Q Consensus 112 lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Iii~T~~~l~~~~~~~--~~~~~~~~~iIi 188 (413)
+|++|+++|+.|+.+.++++....+..+..+.++....... .....+++|+|+||+.+...+... ...+.+++++|+
T Consensus 102 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 102 LIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEE
Confidence 99999999999999999999888888887777654322211 112346799999999999998876 456778999999
Q ss_pred ccchhhhc---cCcHHHHHHHHhhCC-CCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCC
Q 015093 189 DEADEMLS---RGFKDQIYDIFQHLP-GKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD 246 (413)
Q Consensus 189 DE~h~~~~---~~~~~~~~~~~~~~~-~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~ 246 (413)
||||++.+ .++...+..++.... .+.+++++|||+++....+.+.++.++..+.....
T Consensus 182 DEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 182 DESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp SSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred eChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 99999887 467778888876654 47899999999999999999999999988876543
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=4.9e-27 Score=226.52 Aligned_cols=318 Identities=18% Similarity=0.172 Sum_probs=232.2
Q ss_pred CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|+ .|+++|..+++.++.|+ +..+.||+|||+++.+|++..... +..++|++||+.|+.|.++.+..+...+++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---G~qv~VvTPTreLA~Qdae~m~~l~~~lGL 149 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---GKGVHVVTVNDYLARRDAEWMGPVYRGLGL 149 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---CSCCEEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---CCCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 688 99999999999999998 999999999999999999543332 347999999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcC------CCCCC---CccEEEEccchhhh-ccCc-------
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRV-FDMLRRQ------SLRPD---YIRMFVLDEADEML-SRGF------- 199 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~------~~~~~---~~~~iIiDE~h~~~-~~~~------- 199 (413)
++.++.|+...... .....++|+|+||+.| ++++... ...+. .+.++|+||+|.++ +...
T Consensus 150 sv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartPLIISg 227 (997)
T 2ipc_A 150 SVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLIISG 227 (997)
T ss_dssp CEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSCEEEEE
T ss_pred eEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCCeeeeC
Confidence 99999999874333 3334689999999999 7777654 24456 78999999999876 2110
Q ss_pred --------HHHHHHHHhhCCC--------------C--------------------------------------------
Q 015093 200 --------KDQIYDIFQHLPG--------------K-------------------------------------------- 213 (413)
Q Consensus 200 --------~~~~~~~~~~~~~--------------~-------------------------------------------- 213 (413)
...+..+...++. .
T Consensus 228 p~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~~i~~A 307 (997)
T 2ipc_A 228 PAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLIQA 307 (997)
T ss_dssp SCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHHHHHHH
Confidence 0111222221110 0
Q ss_pred -----------------------------------------------------------------------ceEEEEeee
Q 015093 214 -----------------------------------------------------------------------IQVGVFSAT 222 (413)
Q Consensus 214 -----------------------------------------------------------------------~~~i~lSAT 222 (413)
.++.+||+|
T Consensus 308 LrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLsGMTGT 387 (997)
T 2ipc_A 308 IRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMTGT 387 (997)
T ss_dssp HHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEEEEESS
T ss_pred HHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHheecCCC
Confidence 378999999
Q ss_pred CChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHh
Q 015093 223 MPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMR 300 (413)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~ 300 (413)
......++...|..+ +...+ ...+......-...+.....+..++..-+... .+.|+||+|.|++..+.+++.|+
T Consensus 388 A~tE~~Ef~~iY~l~-Vv~IP--Tn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~ 464 (997)
T 2ipc_A 388 AKTEEKEFQEIYGMD-VVVVP--TNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLK 464 (997)
T ss_dssp CGGGHHHHHHHHCCC-EEECC--CSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhCCC-EEEcC--CCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHh
Confidence 987766655555444 32222 22222222333333455566666666544433 56799999999999999999998
Q ss_pred ----------------------------------------------------------------------------hCCC
Q 015093 301 ----------------------------------------------------------------------------SRDH 304 (413)
Q Consensus 301 ----------------------------------------------------------------------------~~~~ 304 (413)
+.|+
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI 544 (997)
T 2ipc_A 465 EPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGI 544 (997)
T ss_dssp CGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHHHHcCC
Confidence 4567
Q ss_pred eeEeecCCCCHHHHHHHHHHHhcCC-CeEEEEeCccccCCCCCCC-------------------C---------------
Q 015093 305 TVSATHGDMDQNSRDIIMREFRSGS-SRVLITTDLLARGIDVQQV-------------------S--------------- 349 (413)
Q Consensus 305 ~~~~~~~~~~~~~r~~~~~~f~~~~-~~vli~t~~~~~G~d~~~~-------------------~--------------- 349 (413)
+..++++.....+. +++. +.|. ..|.|||+++++|.|+.-- .
T Consensus 545 ~H~VLNAK~he~EA-eIIA--qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (997)
T 2ipc_A 545 PHQVLNAKHHAREA-EIVA--QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKE 621 (997)
T ss_dssp CCCEECSSSHHHHH-HHHH--TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCH
T ss_pred CeeeccccchHHHH-HHHH--hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccccccccch
Confidence 77778877543333 3333 3343 4588999999999998522 1
Q ss_pred ----------------------------------------EEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHH
Q 015093 350 ----------------------------------------LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDR 389 (413)
Q Consensus 350 ----------------------------------------~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 389 (413)
+||-...+.|...-.|.-||+||.|.+|...+|++-.|.-
T Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeDdL 701 (997)
T 2ipc_A 622 EEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDDL 701 (997)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSSHH
T ss_pred hhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECChHH
Confidence 6787888889999999999999999999999999877653
No 75
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.96 E-value=1.9e-28 Score=198.87 Aligned_cols=162 Identities=64% Similarity=1.019 Sum_probs=147.5
Q ss_pred CceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCe
Q 015093 252 GIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSR 331 (413)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 331 (413)
.+.+.+..++....+...+..+++....+++||||++++.++.+++.|.+.++.+..+||+++..+|.++++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 46677777776566999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhc
Q 015093 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVAD 411 (413)
Q Consensus 332 vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (413)
|||+|+++++|+|+|++++||+++.|++...|.||+||+||.|++|.|++++++.+...+..+.+++...++++|.++.+
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIAT 162 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCTT
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred cC
Q 015093 412 LI 413 (413)
Q Consensus 412 ~~ 413 (413)
++
T Consensus 163 ~~ 164 (165)
T 1fuk_A 163 LL 164 (165)
T ss_dssp TT
T ss_pred hc
Confidence 64
No 76
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=1.9e-27 Score=192.45 Aligned_cols=158 Identities=41% Similarity=0.641 Sum_probs=147.0
Q ss_pred cccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhc
Q 015093 248 LTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRS 327 (413)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 327 (413)
..++.+.+.+...+. ..+...+..++.....+++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++
T Consensus 5 ~~~~~i~~~~~~~~~-~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 5 LTTRNIEHAVIQVRE-ENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp -CCCCEEEEEEECCG-GGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCcccceEEEEECCh-HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 345567777777665 6789999999998888899999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCC
Q 015093 328 GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELP 406 (413)
Q Consensus 328 ~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (413)
|+.+|||+|+++++|+|+|++++||++++|+++..|.||+||+||.|++|.+++++.+.+...+..+.++++..++.++
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998887664
No 77
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=9.1e-28 Score=196.88 Aligned_cols=164 Identities=45% Similarity=0.776 Sum_probs=149.3
Q ss_pred cccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhc
Q 015093 248 LTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRS 327 (413)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 327 (413)
..+..+.+.+..++....+...+..+++....+++||||++++.++.+++.|.+.++.+..+||++++.+|.++++.|++
T Consensus 3 ~~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CCBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred CccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 34567888888888766799999999998888899999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCccccCCCCCCCCEEEEcCCC------CChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccc
Q 015093 328 GSSRVLITTDLLARGIDVQQVSLVINYDLP------TQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVV 401 (413)
Q Consensus 328 ~~~~vli~t~~~~~G~d~~~~~~vi~~~~~------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 401 (413)
|+.+|||||+++++|+|+|.+++||+++.| .+...|.||+||+||.|++|.+++++.+.+...+..+.+.++..
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred cccCCcchhc
Q 015093 402 IEELPANVAD 411 (413)
Q Consensus 402 ~~~~~~~~~~ 411 (413)
++.+|..-.+
T Consensus 163 ~~~~~~~~~~ 172 (175)
T 2rb4_A 163 IKQLNAEDMD 172 (175)
T ss_dssp CEEECSSCCC
T ss_pred ccccCCchhc
Confidence 8888776544
No 78
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=2.4e-26 Score=225.24 Aligned_cols=129 Identities=23% Similarity=0.320 Sum_probs=113.5
Q ss_pred cHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccC
Q 015093 265 WKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARG 342 (413)
Q Consensus 265 ~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 342 (413)
.....+...+... .+.++||||+++..++.+++.|.+.|+.+..+||++++.+|.++++.|++|+.+|||||+++++|
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~G 502 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREG 502 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTT
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcC
Confidence 3444444444332 56799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCC-----CCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHH
Q 015093 343 IDVQQVSLVINYDL-----PTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 343 ~d~~~~~~vi~~~~-----~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 394 (413)
+|+|++++||+++. |.|..+|+||+||+||.+ +|.++++++..+..+...+
T Consensus 503 lDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i 558 (664)
T 1c4o_A 503 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAI 558 (664)
T ss_dssp CCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHH
T ss_pred ccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHH
Confidence 99999999999997 889999999999999985 7999999998776554444
No 79
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=198.41 Aligned_cols=178 Identities=27% Similarity=0.436 Sum_probs=145.8
Q ss_pred HhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCC
Q 015093 233 KFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGD 312 (413)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~ 312 (413)
.++.+|..+.+.........+.+.+..++. ..+...+..++... .+++||||++++.++.+++.|+..++.+..+||+
T Consensus 10 ~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~ 87 (191)
T 2p6n_A 10 GVDLGTENLYFQSMGAASLDVIQEVEYVKE-EAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGG 87 (191)
T ss_dssp ------------------CCSEEEEEECCG-GGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred cccCCCEEEEECCCCCCCcCceEEEEEcCh-HHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 455666666666666667788888877665 57888888888775 4689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccc-cHHHH
Q 015093 313 MDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DDRML 391 (413)
Q Consensus 313 ~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~ 391 (413)
+++.+|.++++.|++|+.+|||+|+++++|+|+|++++||++++|+++..|.||+||+||.|++|.+++++++. +....
T Consensus 88 ~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~ 167 (191)
T 2p6n_A 88 KDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVL 167 (191)
T ss_dssp SCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976 78889
Q ss_pred HHHHHHhccccccCCcchhcc
Q 015093 392 ADIQRFYNVVIEELPANVADL 412 (413)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~ 412 (413)
..+.+.+....+.+|.++.++
T Consensus 168 ~~l~~~l~~~~~~~p~~l~~~ 188 (191)
T 2p6n_A 168 MDLKALLLEAKQKVPPVLQVL 188 (191)
T ss_dssp HHHHHHHHHTTCCCCHHHHST
T ss_pred HHHHHHHHHccCcCCHHHHhh
Confidence 999999999999999988765
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=2.9e-27 Score=192.86 Aligned_cols=159 Identities=36% Similarity=0.666 Sum_probs=144.9
Q ss_pred cCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCC
Q 015093 250 LEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGS 329 (413)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 329 (413)
+..+.+.+..++. ..+...+..+++....+++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+
T Consensus 3 ~~~i~q~~~~~~~-~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLKD-NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECCG-GGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECCh-HHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 3466777776665 679999999999988889999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccc-cHHHHHHHHHHhccccccCCcc
Q 015093 330 SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DDRMLADIQRFYNVVIEELPAN 408 (413)
Q Consensus 330 ~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 408 (413)
.+|||||+++++|+|+|++++||++++|+|...|.||+||+||.|+.|.+++++++. +...+..+.+.+...++.+|.+
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 161 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC--
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChh
Confidence 999999999999999999999999999999999999999999999999999999876 5678899999999999999876
Q ss_pred h
Q 015093 409 V 409 (413)
Q Consensus 409 ~ 409 (413)
+
T Consensus 162 ~ 162 (172)
T 1t5i_A 162 I 162 (172)
T ss_dssp -
T ss_pred h
Confidence 4
No 81
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=196.25 Aligned_cols=165 Identities=33% Similarity=0.536 Sum_probs=138.3
Q ss_pred ccccCCceEEEEEeCccccHHHHHHHHHHhc-CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHH
Q 015093 247 ELTLEGIKQFHVNVDKEEWKLDTLCDLYETL-AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREF 325 (413)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 325 (413)
....+.+.+.+..++. ..+...|..+++.. ..+++||||++++.++.+++.|...++.+..+||++++.+|.++++.|
T Consensus 14 ~~~~~~i~q~~~~v~~-~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 14 GSTSENITQKVVWVEE-SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp --CCTTEEEEEEECCG-GGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred CCCCCCceEEEEEeCc-HHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 3445678888887765 57888999999887 567999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccC
Q 015093 326 RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEEL 405 (413)
Q Consensus 326 ~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (413)
++|+.+|||+|+++++|+|+|++++||++++|+++..|.||+||+||.|+.|.|++++++.+...+..+.++++...+.+
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 172 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEV 172 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCC
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccchhcc
Q 015093 406 PANVADL 412 (413)
Q Consensus 406 ~~~~~~~ 412 (413)
|.++.++
T Consensus 173 ~~~l~~~ 179 (185)
T 2jgn_A 173 PSWLENM 179 (185)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 9887764
No 82
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=5.3e-26 Score=222.71 Aligned_cols=187 Identities=23% Similarity=0.280 Sum_probs=138.2
Q ss_pred CceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc--CCCcEEEEEcCcc
Q 015093 213 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL--AITQSVIFVNTRR 290 (413)
Q Consensus 213 ~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~ 290 (413)
..+++++|||+++..... ................+. ............+...+... .+.++||||+++.
T Consensus 386 ~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p~-----i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 456 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDPL-----IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKK 456 (661)
T ss_dssp CSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCCE-----EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred CCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCCe-----EEEecccchHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 568899999997543211 122222222111111111 11122233444444444332 4579999999999
Q ss_pred cHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC-----CCChhHHHh
Q 015093 291 KVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL-----PTQPENYLH 365 (413)
Q Consensus 291 ~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~-----~~s~~~~~Q 365 (413)
.++.+++.|++.|+.+..+||++++.+|.++++.|++|+.+|||+|+++++|+|+|++++||+++. |.|..+|+|
T Consensus 457 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQ 536 (661)
T 2d7d_A 457 MSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 536 (661)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 899999999
Q ss_pred hhcccCCCCCcceEEEEeccccHHHHHH---------HHHHhccccccCCcch
Q 015093 366 RIGRSGRFGRKGVAINFVTRDDDRMLAD---------IQRFYNVVIEELPANV 409 (413)
Q Consensus 366 ~~GR~~R~g~~g~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 409 (413)
|+||+||. .+|.|++++++.+..+... +...++......|...
T Consensus 537 r~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~~~~r~i~~~~~~~~~~~p~~~ 588 (661)
T 2d7d_A 537 TIGRAARN-AEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTI 588 (661)
T ss_dssp HHHTTTTS-TTCEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred HhCcccCC-CCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCch
Confidence 99999998 7899999999876654443 3445555555555443
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=4.8e-26 Score=192.18 Aligned_cols=145 Identities=31% Similarity=0.559 Sum_probs=136.8
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccC
Q 015093 263 EEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARG 342 (413)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 342 (413)
...+...+..++.....+++||||++++.++.+++.|.+.++.+..+||++++.+|.++++.|++|+.+|||||+++++|
T Consensus 15 ~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 94 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94 (212)
T ss_dssp TTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCS
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcC
Confidence 36799999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCc
Q 015093 343 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPA 407 (413)
Q Consensus 343 ~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (413)
+|+|++++||+++.|++...|.||+||+||.|++|.|++++++.+...+..+.+.++..++.++.
T Consensus 95 idi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 159 (212)
T 3eaq_A 95 LDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNP 159 (212)
T ss_dssp SSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCC
T ss_pred CCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCC
Confidence 99999999999999999999999999999999999999999999999999999999988877654
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=3.8e-25 Score=195.13 Aligned_cols=154 Identities=31% Similarity=0.530 Sum_probs=138.3
Q ss_pred ceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeE
Q 015093 253 IKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRV 332 (413)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 332 (413)
+.+.+..... ..+...+..+++....+++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|
T Consensus 3 v~~~~i~~~~-~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPV-RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCS-SSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCH-HHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 3445555554 679999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCc
Q 015093 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPA 407 (413)
Q Consensus 333 li~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (413)
||||+++++|+|+|++++||+++.|.+...|.||+||+||.|++|.|++++++.+...+..+.+.++..++.++.
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~ 156 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNP 156 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988876654
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.87 E-value=4.8e-27 Score=191.50 Aligned_cols=156 Identities=35% Similarity=0.560 Sum_probs=141.1
Q ss_pred ceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeE
Q 015093 253 IKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRV 332 (413)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 332 (413)
+.+.+...+....+...+..+++....+++||||++++.++.+++.|++.++.+..+||++++.+|.++++.|++|+.+|
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~v 83 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 83 (170)
Confidence 34444444444567888888888877789999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcc
Q 015093 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPAN 408 (413)
Q Consensus 333 li~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (413)
||||+++++|+|+|++++||+++.|+|...|.||+||+||.|+.|.+++++++.+...+..+.++++..++.++.+
T Consensus 84 LvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (170)
T 2yjt_D 84 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVID 159 (170)
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887766543
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.92 E-value=6.9e-25 Score=186.78 Aligned_cols=165 Identities=15% Similarity=0.117 Sum_probs=117.8
Q ss_pred hCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc---CceeEEEEcccHHHHHH-HHHHHHHhh
Q 015093 57 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES---LQCQALVLAPTRELAQQ-IEKVMRALG 132 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~---~~~~~lvl~P~~~l~~q-~~~~~~~~~ 132 (413)
......|+++|.++++.+.+++++++.+|||+|||++++.++...+.... .+.+++|++|+++|+.| +.+.+.++.
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 34455899999999999999999999999999999999988887664322 24589999999999999 788888876
Q ss_pred cccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCC------CCCCCccEEEEccchhhhccCcHHHH-HH
Q 015093 133 DYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQS------LRPDYIRMFVLDEADEMLSRGFKDQI-YD 205 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~------~~~~~~~~iIiDE~h~~~~~~~~~~~-~~ 205 (413)
.. +..+..+.|+.............++|+|+||+.|...+.... ..+.++++||+||||++.+..+...+ ..
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp TT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred cc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 54 667778877765433333333457999999999998887643 45667899999999998765444333 33
Q ss_pred HHhhC-------------CCCceEEEEeee
Q 015093 206 IFQHL-------------PGKIQVGVFSAT 222 (413)
Q Consensus 206 ~~~~~-------------~~~~~~i~lSAT 222 (413)
++... .+.++++++|||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 32221 146899999998
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.91 E-value=5.5e-24 Score=204.58 Aligned_cols=102 Identities=11% Similarity=0.178 Sum_probs=66.0
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEE--EeCccccCCCCCC----CCEE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLI--TTDLLARGIDVQQ----VSLV 351 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli--~t~~~~~G~d~~~----~~~v 351 (413)
..+.+|||++|...++.+++.|+. .. ...++.. .++.++++.|+++. .|++ +|..+.+|+|+|+ +++|
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~V 456 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESL 456 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEE
Confidence 457899999999999999998865 22 3445543 35788999998864 5777 7799999999997 7889
Q ss_pred EEcCCCCCh------------------------------hHHHhhhcccCCCCCcceEEEEecc
Q 015093 352 INYDLPTQP------------------------------ENYLHRIGRSGRFGRKGVAINFVTR 385 (413)
Q Consensus 352 i~~~~~~s~------------------------------~~~~Q~~GR~~R~g~~g~~~~~~~~ 385 (413)
|+++.|... ..+.|.+||+.|...+.-+++++++
T Consensus 457 ii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 457 VLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp EEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 999987421 2357999999998655444555543
No 88
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.91 E-value=6.2e-22 Score=191.10 Aligned_cols=308 Identities=16% Similarity=0.129 Sum_probs=195.5
Q ss_pred CCcHHHHhhhhh----hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 62 KPSAIQQRGIVP----FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~----~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
+||++|.++++. +..++++++.+|||+|||++|++|++. .+.+++|++||++|+.|+.+++..+....++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~ 76 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRNI 76 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCc
Confidence 699999987764 456899999999999999999999987 2459999999999999999999988776677
Q ss_pred eEEEEECCcch---------------------------------HHHH------------------HHHhcCCcEEEeCh
Q 015093 138 KVHACVGGTSV---------------------------------REDQ------------------RILSAGVHVVVGTP 166 (413)
Q Consensus 138 ~~~~~~~~~~~---------------------------------~~~~------------------~~~~~~~~Iii~T~ 166 (413)
++..+.|..+. .... +.....++|+|+|+
T Consensus 77 ~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~ 156 (551)
T 3crv_A 77 TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTY 156 (551)
T ss_dssp CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEET
T ss_pred cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCc
Confidence 77777663321 0000 11234679999999
Q ss_pred HHHHHHHHcCCCCC-CCccEEEEccchhhhccCc----------------------------------------------
Q 015093 167 GRVFDMLRRQSLRP-DYIRMFVLDEADEMLSRGF---------------------------------------------- 199 (413)
Q Consensus 167 ~~l~~~~~~~~~~~-~~~~~iIiDE~h~~~~~~~---------------------------------------------- 199 (413)
+.|++...+..+.. ....++|+||||++.+ ..
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~ 235 (551)
T 3crv_A 157 PYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYI 235 (551)
T ss_dssp HHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCE
T ss_pred hHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99987754443322 3467999999998765 10
Q ss_pred ---------HHHHH----------------------------HHH----------------------------hhCCCC-
Q 015093 200 ---------KDQIY----------------------------DIF----------------------------QHLPGK- 213 (413)
Q Consensus 200 ---------~~~~~----------------------------~~~----------------------------~~~~~~- 213 (413)
...+. ..+ +.+...
T Consensus 236 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~ 315 (551)
T 3crv_A 236 KVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNE 315 (551)
T ss_dssp ECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTT
T ss_pred ccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccC
Confidence 00000 000 001122
Q ss_pred ceEEEEeeeCChhHHHHHHHhcCCC--EEE---Ee-cCCccccCCceEEEEEe--Cc--c---ccHHHHHHHHHHh---c
Q 015093 214 IQVGVFSATMPPEALEITRKFMNKP--VRI---LV-KRDELTLEGIKQFHVNV--DK--E---EWKLDTLCDLYET---L 277 (413)
Q Consensus 214 ~~~i~lSAT~~~~~~~~~~~~~~~~--~~~---~~-~~~~~~~~~~~~~~~~~--~~--~---~~~~~~l~~~~~~---~ 277 (413)
..+|++|||+.+ . +.....++-+ ... .. ....+ .+-...+... +. . ......+.+.+.. .
T Consensus 316 ~svIltSaTL~~-~-~~~~~~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~ 391 (551)
T 3crv_A 316 LSIILMSGTLPP-R-EYMEKVWGIKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ 391 (551)
T ss_dssp CEEEEEESSCCC-H-HHHHHTSCCCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeeCCCc-H-HHHHHHhCCCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh
Confidence 578999999986 3 3333334432 211 00 11112 2222222221 11 0 1122333333322 2
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEe--CccccCCCCC-----CCCE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITT--DLLARGIDVQ-----QVSL 350 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t--~~~~~G~d~~-----~~~~ 350 (413)
.++.++||++|...++.+++. .+..+..-..+++ +.+.++.|+.....||+++ ..+.+|||+| .++.
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~ 465 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISD 465 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEE
T ss_pred CCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeE
Confidence 457899999999999999873 3433433223444 4556777854445799998 5999999999 3788
Q ss_pred EEEcCCCCC--------------------h----------hHHHhhhcccCCCCCcceEEEEeccc
Q 015093 351 VINYDLPTQ--------------------P----------ENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 351 vi~~~~~~s--------------------~----------~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
||+.+.|.. . ..+.|.+||+-|...+.-++++++..
T Consensus 466 viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 466 VVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp EEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 998886631 1 11359999999987665555555543
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.88 E-value=5e-23 Score=182.29 Aligned_cols=154 Identities=17% Similarity=0.121 Sum_probs=122.0
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.|+++|.++++.+..+++.++++|||+|||.+++.++...+... ..+++|++|+++|++||.++++++....+..+..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhcccccceEEE
Confidence 89999999999999888899999999999999988777655432 3389999999999999999999987666667777
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEee
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSA 221 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (413)
+.++..... ......+|+|+||+.+... .......+++||+||||++.+ ..+..++..+....+++++||
T Consensus 191 ~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~lSA 260 (282)
T 1rif_A 191 IGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSG 260 (282)
T ss_dssp CSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECS
T ss_pred EeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEEEeC
Confidence 777654321 1124579999999987543 222345689999999999853 466778888877899999999
Q ss_pred eCChhH
Q 015093 222 TMPPEA 227 (413)
Q Consensus 222 T~~~~~ 227 (413)
||++..
T Consensus 261 Tp~~~~ 266 (282)
T 1rif_A 261 SLRDGK 266 (282)
T ss_dssp SCCTTS
T ss_pred CCCCcc
Confidence 997643
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.86 E-value=4.3e-21 Score=164.96 Aligned_cols=171 Identities=18% Similarity=0.204 Sum_probs=124.0
Q ss_pred CHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc--CceeEEEEcccHHHHHHHH
Q 015093 48 KENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES--LQCQALVLAPTRELAQQIE 125 (413)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~--~~~~~lvl~P~~~l~~q~~ 125 (413)
++.+.+.........++++|.++++.+.+|+++++.||||||||.++..++++...... ...++++++|+++++.|..
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~ 126 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVA 126 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHH
Confidence 34444444444445789999999999999999999999999999888777776554332 2458999999999999998
Q ss_pred HHHHHhhc-ccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhh-hccCcH-HH
Q 015093 126 KVMRALGD-YMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEM-LSRGFK-DQ 202 (413)
Q Consensus 126 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~-~~~~~~-~~ 202 (413)
+.+..... ..+..++........ .....++|+|+||+.+.+.+.. .+.++++||+||||+. .+.++. ..
T Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~ 198 (235)
T 3llm_A 127 ERVAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVV 198 (235)
T ss_dssp HHHHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHH
T ss_pred HHHHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHH
Confidence 88866433 234444433322210 0013478999999999998876 3678999999999984 454444 45
Q ss_pred HHHHHhhCCCCceEEEEeeeCChhH
Q 015093 203 IYDIFQHLPGKIQVGVFSATMPPEA 227 (413)
Q Consensus 203 ~~~~~~~~~~~~~~i~lSAT~~~~~ 227 (413)
+..+....+ +.+++++|||++...
T Consensus 199 l~~i~~~~~-~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 199 LRDVVQAYP-EVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHHHHCT-TSEEEEEECSSCCHH
T ss_pred HHHHHhhCC-CCeEEEEecCCCHHH
Confidence 566666654 689999999998665
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.85 E-value=2.1e-19 Score=174.71 Aligned_cols=81 Identities=23% Similarity=0.254 Sum_probs=65.5
Q ss_pred CCcHHHHhhhhh----hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 62 KPSAIQQRGIVP----FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~----~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
+||+.|.+.+.. +..|+++++.+|||+|||+++++|++..+... +.+++|++||++++.|+.+++..+....++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 689999988864 56789999999999999999999998876542 358999999999999999999888665556
Q ss_pred eEEEEEC
Q 015093 138 KVHACVG 144 (413)
Q Consensus 138 ~~~~~~~ 144 (413)
++..+.|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 6555554
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.85 E-value=1.6e-20 Score=161.14 Aligned_cols=138 Identities=17% Similarity=0.175 Sum_probs=110.3
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCce-EE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVK-VH 140 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~-~~ 140 (413)
.|+++|.++++.+.+++++++++|||+|||.+++.++... +.+++|++|+++|+.||.+.+.++ +.. +.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~ 162 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC----CCCeEE
Confidence 7999999999999999999999999999999987776653 348999999999999999998884 566 77
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
.+.|+.. ...+|+|+|++.+....... ...+++||+||+|++.+..+. .+...++ ..+++++|
T Consensus 163 ~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~~~l~LS 225 (237)
T 2fz4_A 163 EFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYV----QIAQMSI-APFRLGLT 225 (237)
T ss_dssp EESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTHH----HHHHTCC-CSEEEEEE
T ss_pred EEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHHH----HHHHhcc-CCEEEEEe
Confidence 7777654 25689999999987665431 234799999999998766544 4555554 67789999
Q ss_pred eeCChh
Q 015093 221 ATMPPE 226 (413)
Q Consensus 221 AT~~~~ 226 (413)
|||...
T Consensus 226 ATp~r~ 231 (237)
T 2fz4_A 226 ATFERE 231 (237)
T ss_dssp ESCC--
T ss_pred cCCCCC
Confidence 999754
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.76 E-value=2.3e-18 Score=150.04 Aligned_cols=126 Identities=16% Similarity=0.213 Sum_probs=99.5
Q ss_pred cccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhC-CCeeEeecCCCCHHHHHHHHHHHhcC-CCe-EEEEeC
Q 015093 263 EEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSR-DHTVSATHGDMDQNSRDIIMREFRSG-SSR-VLITTD 337 (413)
Q Consensus 263 ~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-vli~t~ 337 (413)
...|...+..++... .+.++||||++...++.+.+.|.+. |+.+..+||+++..+|.++++.|+++ +.+ +|++|+
T Consensus 94 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 173 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 173 (271)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh
Confidence 457888888888776 6789999999999999999999885 89999999999999999999999998 677 788999
Q ss_pred ccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceE--EEEeccccH
Q 015093 338 LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVA--INFVTRDDD 388 (413)
Q Consensus 338 ~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~~ 388 (413)
++++|+|++.+++||++++||++..+.|++||++|.|+.+.+ +.+++....
T Consensus 174 ~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~Ti 226 (271)
T 1z5z_A 174 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 226 (271)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSH
T ss_pred hhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCH
Confidence 999999999999999999999999999999999999986654 556666543
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.86 E-value=6.7e-09 Score=100.96 Aligned_cols=160 Identities=19% Similarity=0.173 Sum_probs=91.9
Q ss_pred HHHHHHHhCC-CCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHH--HHHHHHHhcccccCceeEEEEcccHHHHHHHHH
Q 015093 50 NLLRGIYAYG-FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT--FCSGILQQLDYESLQCQALVLAPTRELAQQIEK 126 (413)
Q Consensus 50 ~~~~~l~~~~-~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~--~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~ 126 (413)
.+...+.... -..-.+.|..++..++.++.+++.|++|+|||.+ +++..+..+.. ..+.++++++||...+.+..+
T Consensus 136 ~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-~~~~~vll~APTg~AA~~L~e 214 (608)
T 1w36_D 136 LLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-GERCRIRLAAPTGKAAARLTE 214 (608)
T ss_dssp HHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-SCCCCEEEEBSSHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-cCCCeEEEEeCChhHHHHHHH
Confidence 3444555431 1123688999999999999999999999999944 44444443322 234589999999999999888
Q ss_pred HHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHH
Q 015093 127 VMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDI 206 (413)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 206 (413)
.+.......++...... ... ... ..-..++-.+++.. .+.........++++|+|||+.+ + ...+..+
T Consensus 215 ~~~~~~~~l~l~~~~~~-~~~--~~~---~Tih~ll~~~~~~~--~~~~~~~~~l~~d~lIIDEAsml-~---~~~~~~L 282 (608)
T 1w36_D 215 SLGKALRQLPLTDEQKK-RIP--EDA---STLHRLLGAQPGSQ--RLRHHAGNPLHLDVLVVDEASMI-D---LPMMSRL 282 (608)
T ss_dssp HHTHHHHHSSCCSCCCC-SCS--CCC---BTTTSCC-------------CTTSCCSCSEEEECSGGGC-B---HHHHHHH
T ss_pred HHHHHHhcCCCCHHHHh-ccc--hhh---hhhHhhhccCCCch--HHHhccCCCCCCCEEEEechhhC-C---HHHHHHH
Confidence 77665443332110000 000 000 00001111122211 01111112225789999999954 2 4566788
Q ss_pred HhhCCCCceEEEEeee
Q 015093 207 FQHLPGKIQVGVFSAT 222 (413)
Q Consensus 207 ~~~~~~~~~~i~lSAT 222 (413)
+..++...+++++.=+
T Consensus 283 l~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 283 IDALPDHARVIFLGDR 298 (608)
T ss_dssp HHTCCTTCEEEEEECT
T ss_pred HHhCCCCCEEEEEcch
Confidence 8888888888876544
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.60 E-value=9.1e-08 Score=94.07 Aligned_cols=67 Identities=21% Similarity=0.214 Sum_probs=54.4
Q ss_pred CCcHHHHhhhhhhhCCCc-EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 62 KPSAIQQRGIVPFCKGLD-VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~-~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
.|.+-|.+|+..++..++ .+|+||+|||||.+....+...+.. +.++|+++||..-++++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHhc
Confidence 578999999999877654 8999999999998876666655443 348999999999998888877654
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.53 E-value=9.3e-07 Score=86.41 Aligned_cols=69 Identities=20% Similarity=0.174 Sum_probs=54.2
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
..+++.|.+++..++.+...+|.||+|+|||.+....+. .+... .+.++++++||...+.+..+.+.+.
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~-~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVY-HLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHH-HHHTS-SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHH-HHHHc-CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 468899999999988877899999999999987644443 33222 3458999999999998888877654
No 97
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.52 E-value=5.5e-07 Score=86.63 Aligned_cols=121 Identities=20% Similarity=0.246 Sum_probs=78.6
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.+.+.|..++..+..++.++|.|++|+|||.+. ..++..+.. .+.++++++||...+....+... ..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~--~g~~Vl~~ApT~~Aa~~L~e~~~-------~~--- 255 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES--LGLEVGLCAPTGKAARRLGEVTG-------RT--- 255 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH--TTCCEEEEESSHHHHHHHHHHHT-------SC---
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh--cCCeEEEecCcHHHHHHhHhhhc-------cc---
Confidence 689999999999999899999999999999764 334444333 24589999999887766544321 11
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHH----HHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEE
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVFDM----LRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVG 217 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~----~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i 217 (413)
..|...++.. +.........+++||+||++.+ -...+..++..++...+++
T Consensus 256 ---------------------a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml----~~~~~~~Ll~~~~~~~~li 310 (574)
T 3e1s_A 256 ---------------------ASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMM----GDALMLSLLAAVPPGARVL 310 (574)
T ss_dssp ---------------------EEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGC----CHHHHHHHHTTSCTTCEEE
T ss_pred ---------------------HHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCC----CHHHHHHHHHhCcCCCEEE
Confidence 1111111100 0111112234789999999976 3456667778887777777
Q ss_pred EEe
Q 015093 218 VFS 220 (413)
Q Consensus 218 ~lS 220 (413)
++.
T Consensus 311 lvG 313 (574)
T 3e1s_A 311 LVG 313 (574)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.52 E-value=1.1e-06 Score=87.74 Aligned_cols=69 Identities=20% Similarity=0.198 Sum_probs=54.7
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
..+++.|.+|+..++.+...+|.||+|||||.+....+...+ .. .+.++++++||...+.+..+.+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~-~~-~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLS-KI-HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHH-HH-HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHH-hC-CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 457899999999998877799999999999987654443332 21 2358999999999999988888764
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.49 E-value=6.2e-07 Score=84.39 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=48.6
Q ss_pred hCCCCCCcHHHHhhhhhhhC----CC-cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHH
Q 015093 57 AYGFEKPSAIQQRGIVPFCK----GL-DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKV 127 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~~~~----~~-~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~ 127 (413)
...+..|++-|.+++..+.. ++ .++|.|++|||||.... .+...+.... ...+++++||...+..+.+.
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~~-~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALISTG-ETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHTT-CCCEEEEESSHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhcC-CceEEEecCcHHHHHHHHhh
Confidence 35567899999999987643 23 79999999999997653 4444443332 23799999998877655443
No 100
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.44 E-value=8.2e-06 Score=80.52 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=55.8
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc-cCceeEEEEcccHHHHHHHHHHHHHhh
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-SLQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-~~~~~~lvl~P~~~l~~q~~~~~~~~~ 132 (413)
..|++-|.+++.. .++.++|.|++|||||.+.+.-+...+... ....+++++++|+..+.++.+.+.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 3689999999984 356799999999999998776666655442 223489999999999999999887764
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.44 E-value=2.1e-06 Score=85.65 Aligned_cols=69 Identities=20% Similarity=0.166 Sum_probs=53.8
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
..+.+.|.+|+..++.+...+|.||+|+|||.+....+ ..+... .+.++++++||...+.+..+.+...
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i-~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV-YHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHH-HHHHTT-CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHH-HHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 35789999999998888789999999999998764433 333322 2458999999999888888777654
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.01 E-value=9.3e-05 Score=64.61 Aligned_cols=124 Identities=14% Similarity=0.096 Sum_probs=90.4
Q ss_pred cccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccc
Q 015093 263 EEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLA 340 (413)
Q Consensus 263 ~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~ 340 (413)
...|...+..++... .+.++|||++..+..+-+.++|...++....+.|.....+++ -.+.+..+.+.|...+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCC
Confidence 356777777777654 456999999999999999999999999999999986543222 1244555666677666
Q ss_pred cCCC-----CCCCCEEEEcCCCCChhHH-HhhhcccCCCC----CcceEEEEeccccHHHH
Q 015093 341 RGID-----VQQVSLVINYDLPTQPENY-LHRIGRSGRFG----RKGVAINFVTRDDDRML 391 (413)
Q Consensus 341 ~G~d-----~~~~~~vi~~~~~~s~~~~-~Q~~GR~~R~g----~~g~~~~~~~~~~~~~~ 391 (413)
.|+| +...+.||.+|..|++..= +|++-|+.|.| ++-.++.+++....+..
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~ 242 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHC 242 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHH
Confidence 6776 6789999999999999875 89999988863 45678888888776653
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.74 E-value=0.00085 Score=60.74 Aligned_cols=72 Identities=8% Similarity=0.021 Sum_probs=55.5
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcc
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~ 134 (413)
.|+++|...+..+...+.+++..+-+.|||......++..+.. ..+..++++.|+..-+....+.++.+...
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 7899999999887555668999999999998776555543333 23458999999999888887777776543
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.69 E-value=0.00012 Score=67.11 Aligned_cols=107 Identities=18% Similarity=0.184 Sum_probs=63.9
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcC
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAG 158 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
-.++.|+.|+|||.... +.+.. .+.+|++|+++++.++.+.+.+.. . ...
T Consensus 163 v~~I~G~aGsGKTt~I~----~~~~~----~~~lVlTpT~~aa~~l~~kl~~~~----~------------------~~~ 212 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL----SRVNF----EEDLILVPGRQAAEMIRRRANASG----I------------------IVA 212 (446)
T ss_dssp EEEEEECTTSCHHHHHH----HHCCT----TTCEEEESCHHHHHHHHHHHTTTS----C------------------CCC
T ss_pred EEEEEcCCCCCHHHHHH----HHhcc----CCeEEEeCCHHHHHHHHHHhhhcC----c------------------ccc
Confidence 37899999999997642 22221 267999999999988877764321 0 011
Q ss_pred CcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeee
Q 015093 159 VHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSAT 222 (413)
Q Consensus 159 ~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT 222 (413)
...-+.|.++++- ..........+++|+||+-.+ . ...+..++...+. .+++++.-+
T Consensus 213 ~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~-~---~~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 213 TKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML-H---TGCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp CTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS-C---HHHHHHHHHHTTC-SEEEEEECT
T ss_pred ccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC-C---HHHHHHHHHhCCC-CEEEEecCc
Confidence 2344788777652 222222223689999999855 2 2333344444443 555554443
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.50 E-value=0.0016 Score=63.04 Aligned_cols=73 Identities=8% Similarity=0.033 Sum_probs=56.7
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhccc
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM 135 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~ 135 (413)
.|+++|...+..+...+..++..+-|+|||.+....++..+... .+.+++++.|+...+....+.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 58999999998875567799999999999987655444433333 34589999999999988888888776544
No 106
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.43 E-value=0.00039 Score=68.71 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=55.7
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc-ccCceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-ESLQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~-~~~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
.|++-|.+++... ++.++|.|+.|||||.+...-+...+.. .-...++++++.|+..+.++.+.+.+...
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 4789999999863 6779999999999999876666655544 22345899999999999999999887653
No 107
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.42 E-value=0.00039 Score=62.28 Aligned_cols=39 Identities=15% Similarity=0.050 Sum_probs=27.3
Q ss_pred CcHHHHhhhhhhh----CCC---cEEEeCCCCCchhHHHHHHHHHh
Q 015093 63 PSAIQQRGIVPFC----KGL---DVIQQAQSGTGKTATFCSGILQQ 101 (413)
Q Consensus 63 ~~~~Q~~~~~~~~----~~~---~~lv~~~tGsGKT~~~~~~i~~~ 101 (413)
++|+|.+++..+. +++ ..++.||+|+|||..+...+-..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH
Confidence 4678887776654 333 38999999999998775444333
No 108
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.31 E-value=0.00043 Score=56.21 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=27.5
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
|+-.++.||+|+|||..++-.+...... +.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~---g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIA---KQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEecc
Confidence 4457889999999998776554444322 44899999874
No 109
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.29 E-value=0.00082 Score=54.39 Aligned_cols=39 Identities=18% Similarity=0.040 Sum_probs=26.9
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
+.-.++.||+|+|||..++-.+...... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~---g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG---KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT---TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeecc
Confidence 4557899999999998765444433322 34788888874
No 110
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.29 E-value=0.00081 Score=55.16 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=27.8
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
|.-.++.+++|+|||..++-.+...... +.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~---g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA---KQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEeccC
Confidence 3336789999999998876655554333 348999999864
No 111
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.26 E-value=0.00025 Score=59.08 Aligned_cols=90 Identities=18% Similarity=0.200 Sum_probs=51.8
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS 156 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
|.-.++.|++|+|||..++-.+...... +.+++++.|...-. . ...+....++.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~---g~kVli~~~~~d~r---~--~~~i~srlG~~------------------ 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA---DVKYLVFKPKIDTR---S--IRNIQSRTGTS------------------ 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEEECCCGG---G--CSSCCCCCCCS------------------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEEeccCch---H--HHHHHHhcCCC------------------
Confidence 4457889999999998775555444322 34788888765310 0 01111111111
Q ss_pred cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhh
Q 015093 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEM 194 (413)
Q Consensus 157 ~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~ 194 (413)
...+-+.+...+...+..... ...+++||+||++.+
T Consensus 66 -~~~~~~~~~~~i~~~i~~~~~-~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 66 -LPSVEVESAPEILNYIMSNSF-NDETKVIGIDEVQFF 101 (223)
T ss_dssp -SCCEEESSTHHHHHHHHSTTS-CTTCCEEEECSGGGS
T ss_pred -ccccccCCHHHHHHHHHHHhh-CCCCCEEEEecCccC
Confidence 012345666666666654322 234789999999965
No 112
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.24 E-value=0.00073 Score=71.26 Aligned_cols=104 Identities=20% Similarity=0.145 Sum_probs=71.8
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc---CceeEEEEcccHHHHHHHHHHHHHhhccc-Cc
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES---LQCQALVLAPTRELAQQIEKVMRALGDYM-GV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~---~~~~~lvl~P~~~l~~q~~~~~~~~~~~~-~~ 137 (413)
.+++-|.+++..- +++++|.|+.|||||.+.+.-+...+.... ...+++++++|++.+.++.+.+....... +.
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~~~~ 87 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKELVQ 87 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHHHhhc
Confidence 6899999999864 788999999999999988776666665533 34589999999999999988887643211 00
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHH
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLR 174 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~ 174 (413)
.++. ......+..-..+-|+|.++|...+.
T Consensus 88 -----~~~~--~~~~~~~~~~~~~~i~T~hsf~~~~l 117 (1232)
T 3u4q_A 88 -----RPGS--LHIRRQLSLLNRASISTLHSFCLQVL 117 (1232)
T ss_dssp -----STTC--HHHHHHHHHTTTSEEECHHHHHHHHH
T ss_pred -----Ccch--HHHHHHHhccCCCeEEeHHHHHHHHH
Confidence 0110 11112222224678999999975543
No 113
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.21 E-value=0.0016 Score=52.50 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=16.3
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.++.+++.||+|+|||..+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3677999999999999765
No 114
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.10 E-value=0.0014 Score=54.25 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=29.5
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
|.-.++.|++|+|||..++-.+...... +.+++++.|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~---g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT---TCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC---CCeEEEEeecCC
Confidence 4447889999999998876666555333 448999998764
No 115
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.10 E-value=0.0052 Score=51.02 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=26.5
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeee
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSAT 222 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT 222 (413)
....+||+||+|.+... ....+..++...+.+..+++.|..
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeCC
Confidence 34579999999987432 345566666666666666655443
No 116
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.04 E-value=0.0011 Score=65.83 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=55.5
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc-cCceeEEEEcccHHHHHHHHHHHHHhh
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-SLQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-~~~~~~lvl~P~~~l~~q~~~~~~~~~ 132 (413)
..|++-|.+++... .+.++|.|+.|||||.+...-+...+... -...++|+++.|+..+.++.+++.+..
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 36899999999863 56799999999999998776666655432 233589999999999999988887753
No 117
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.03 E-value=0.0034 Score=55.87 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=23.1
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
++.+++.||+|+|||..+- .+...+... +..++++..
T Consensus 37 ~~~lll~G~~GtGKT~la~-~i~~~~~~~--~~~~~~i~~ 73 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ-AAGNEAKKR--GYRVIYSSA 73 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH-HHHHHHHHT--TCCEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHC--CCEEEEEEH
Confidence 4679999999999997653 333333222 235555543
No 118
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.86 E-value=0.005 Score=56.15 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=15.7
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
++.+++.||+|+|||..+
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 467999999999999765
No 119
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.84 E-value=0.0052 Score=47.27 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=16.7
Q ss_pred hCCCcEEEeCCCCCchhHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~ 94 (413)
..+.++++.||+|+|||..+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 34677999999999999765
No 120
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.83 E-value=0.0013 Score=53.87 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=26.8
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
|.-.++.+|+|+|||...+-.+...... +.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~---g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYA---KQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc---CCceEEEEeccC
Confidence 3447889999999997665554433222 348899999765
No 121
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0051 Score=54.11 Aligned_cols=39 Identities=8% Similarity=0.135 Sum_probs=24.6
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhh---CCCCceEEEEeeeCC
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQH---LPGKIQVGVFSATMP 224 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~---~~~~~~~i~lSAT~~ 224 (413)
..+|++||+|.+.. ...+..+++. -....-+|+.++|+.
T Consensus 133 ~~ii~lDE~d~l~~---q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 133 KTLILIQNPENLLS---EKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp EEEEEEECCSSSCC---THHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred ceEEEEecHHHhhc---chHHHHHHhcccccCCcEEEEEEecCcc
Confidence 46899999999862 3444444432 122455677788874
No 122
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.82 E-value=0.0039 Score=48.11 Aligned_cols=38 Identities=8% Similarity=0.079 Sum_probs=24.4
Q ss_pred cEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeee
Q 015093 184 RMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSAT 222 (413)
Q Consensus 184 ~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT 222 (413)
+.+++||+|.+.. .....+..++...+.+.++|+.|..
T Consensus 78 g~l~ldei~~l~~-~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 78 GTLVLSHPEHLTR-EQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp SCEEEECGGGSCH-HHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred cEEEEcChHHCCH-HHHHHHHHHHhhcCCCEEEEEECCc
Confidence 5799999998743 2345555666666656666654443
No 123
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.79 E-value=0.0007 Score=52.69 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=16.5
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.++.+++.||+|+|||..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999764
No 124
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.73 E-value=0.0028 Score=51.06 Aligned_cols=38 Identities=16% Similarity=0.089 Sum_probs=27.5
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
++=.++.||+|+|||.-.+..+-..... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEccc
Confidence 4447899999999997665555544333 3489999887
No 125
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.73 E-value=0.0072 Score=56.21 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=23.7
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
+.+++.||+|+|||..+ ..+...+.....+.+++++..
T Consensus 131 ~~lll~Gp~G~GKTtLa-~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp CCEEEECSSSSSHHHHH-HHHHHHHHHHCCSSCEEEEEH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhCCCCeEEEeeH
Confidence 56999999999999765 334333333322335565543
No 126
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.53 E-value=0.04 Score=47.45 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=15.4
Q ss_pred CcEEEeCCCCCchhHHHH
Q 015093 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~ 95 (413)
..+++.||+|+|||..+-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999997763
No 127
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.53 E-value=0.0049 Score=56.21 Aligned_cols=37 Identities=27% Similarity=0.423 Sum_probs=22.4
Q ss_pred EEEEccchhhhccCcHHH-HHHHHhhCCCCceEEEEeee
Q 015093 185 MFVLDEADEMLSRGFKDQ-IYDIFQHLPGKIQVGVFSAT 222 (413)
Q Consensus 185 ~iIiDE~h~~~~~~~~~~-~~~~~~~~~~~~~~i~lSAT 222 (413)
+||+||+|.+........ +..+++.. .+..+|+.|..
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~ 173 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISND 173 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSS
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECC
Confidence 999999999865432344 55555544 44555544443
No 128
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.50 E-value=0.0059 Score=58.99 Aligned_cols=113 Identities=18% Similarity=0.237 Sum_probs=73.0
Q ss_pred CCcHHHHhhhhhhhC--CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceE
Q 015093 62 KPSAIQQRGIVPFCK--GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKV 139 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~--~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~ 139 (413)
.++.-|.+++..+.. ....++.|+-|.|||.+.-+.+ ..+. ..++|..|+..-+....+ +...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~~-----~~~~vtAP~~~a~~~l~~----~~~~----- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRIA-----GRAIVTAPAKASTDVLAQ----FAGE----- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHSS-----SCEEEECSSCCSCHHHHH----HHGG-----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHHH-----hCcEEECCCHHHHHHHHH----HhhC-----
Confidence 678899999988876 3458999999999995543333 3332 146999999875553332 2110
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEE
Q 015093 140 HACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVF 219 (413)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~l 219 (413)
.|-+..|+.+.. . ....+++|||||=.+ ....+..++..++ .+++
T Consensus 240 --------------------~i~~~~Pd~~~~---~----~~~~dlliVDEAAaI----p~pll~~ll~~~~----~v~~ 284 (671)
T 2zpa_A 240 --------------------KFRFIAPDALLA---S----DEQADWLVVDEAAAI----PAPLLHQLVSRFP----RTLL 284 (671)
T ss_dssp --------------------GCCBCCHHHHHH---S----CCCCSEEEEETGGGS----CHHHHHHHHTTSS----EEEE
T ss_pred --------------------CeEEeCchhhhh---C----cccCCEEEEEchhcC----CHHHHHHHHhhCC----eEEE
Confidence 133445665431 1 123789999999976 4555556665443 5778
Q ss_pred eeeCC
Q 015093 220 SATMP 224 (413)
Q Consensus 220 SAT~~ 224 (413)
|.|..
T Consensus 285 ~tTv~ 289 (671)
T 2zpa_A 285 TTTVQ 289 (671)
T ss_dssp EEEBS
T ss_pred EecCC
Confidence 88875
No 129
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.47 E-value=0.0086 Score=53.20 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=25.3
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEE
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVF 219 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~l 219 (413)
..+++++||+|.+........+..++...+....+|+.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~ 142 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIIT 142 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEE
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEE
Confidence 46899999999885233455566666665555666653
No 130
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.39 E-value=0.01 Score=53.30 Aligned_cols=41 Identities=17% Similarity=0.311 Sum_probs=27.1
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
...++++||+|.+... ....+.+.+...+....+++.+..+
T Consensus 133 ~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~~~ 173 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICNYV 173 (353)
T ss_dssp SCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred CceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeCch
Confidence 3579999999987432 3455666777766666666554433
No 131
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.37 E-value=0.0035 Score=55.30 Aligned_cols=19 Identities=32% Similarity=0.358 Sum_probs=15.9
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
+.++++.||+|+|||..+-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4569999999999997763
No 132
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.32 E-value=0.0061 Score=51.38 Aligned_cols=19 Identities=11% Similarity=0.041 Sum_probs=16.3
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.++.+++.||+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3567999999999999765
No 133
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.29 E-value=0.019 Score=51.61 Aligned_cols=42 Identities=12% Similarity=0.299 Sum_probs=29.8
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCC
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
..+++|+||+|. .+......+.+.+...+.+..+++.|-.+.
T Consensus 134 ~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 134 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 468999999998 445456677777877776666666555443
No 134
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.25 E-value=0.018 Score=51.05 Aligned_cols=39 Identities=13% Similarity=0.265 Sum_probs=26.0
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEee
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSA 221 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (413)
...++|+||+|.+... ....+.+.+...+....+++.+.
T Consensus 110 ~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 110 SFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp SCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 3579999999987432 34556666777666666665443
No 135
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.22 E-value=0.038 Score=47.91 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=16.4
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.++.+++.||+|+|||..+
T Consensus 50 ~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCSEEEEESSSSSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 4567999999999999765
No 136
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.20 E-value=0.0063 Score=55.57 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=14.5
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
.+++.||+|+|||..+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999765
No 137
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.96 E-value=0.04 Score=49.15 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=15.2
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 56999999999999775
No 138
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.90 E-value=0.027 Score=46.07 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.6
Q ss_pred CcEEEeCCCCCchhHHHH
Q 015093 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~ 95 (413)
+.+++.||+|+|||..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 679999999999997653
No 139
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.88 E-value=0.018 Score=50.88 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=24.6
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..++|+||+|.+... ....+.+.+...+....+++.|
T Consensus 108 ~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 108 HKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEE
T ss_pred ceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEe
Confidence 689999999987432 2344556666666666666554
No 140
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.86 E-value=0.042 Score=50.50 Aligned_cols=130 Identities=16% Similarity=0.224 Sum_probs=65.7
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc-cc-HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHh
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA-PT-RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS 156 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~-P~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
-+++.+++|+|||.+....+. .+. .. +.+++++. ++ +.-+ .+.+..+....++.+.....+.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~-~l~-~~-G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~---------- 162 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAY-FYK-KR-GYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQ---------- 162 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHH-HHH-HT-TCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCS----------
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHH-Hc-CCeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccC----------
Confidence 478899999999987644333 222 22 33565554 32 2212 2334444443444332211111
Q ss_pred cCCcEEEeChHHHH-HHHHcCCCCCCCccEEEEccchhhh---ccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHH
Q 015093 157 AGVHVVVGTPGRVF-DMLRRQSLRPDYIRMFVLDEADEML---SRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITR 232 (413)
Q Consensus 157 ~~~~Iii~T~~~l~-~~~~~~~~~~~~~~~iIiDE~h~~~---~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~ 232 (413)
.|..+. ..+.. .....++++|+|++.+.. +......+..+.+...+..-++.++|+...+......
T Consensus 163 --------dp~~i~~~al~~--a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~ 232 (433)
T 3kl4_A 163 --------NPIEIAKKGVDI--FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLAS 232 (433)
T ss_dssp --------CHHHHHHHHHHH--TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHH
T ss_pred --------CHHHHHHHHHHH--HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHH
Confidence 122221 12222 112347899999998643 2223445555555555556677788887555444444
Q ss_pred Hh
Q 015093 233 KF 234 (413)
Q Consensus 233 ~~ 234 (413)
.+
T Consensus 233 ~f 234 (433)
T 3kl4_A 233 RF 234 (433)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 141
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.86 E-value=0.024 Score=49.75 Aligned_cols=38 Identities=5% Similarity=0.167 Sum_probs=26.6
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..+++|+||+|.+... -...+.+.+...++...+++.+
T Consensus 82 ~~kvviIdead~lt~~-a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQ-AANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSEEEEETTGGGBCHH-HHHHTHHHHHSCCTTEEEEEEE
T ss_pred CceEEEeccHHHhCHH-HHHHHHHHHhCCCCCeEEEEEE
Confidence 4689999999987433 3456667777766666666554
No 142
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.83 E-value=0.044 Score=44.20 Aligned_cols=134 Identities=16% Similarity=0.139 Sum_probs=69.4
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH-HHHHHHHHHHHhhcccCceEEEEECCcc----h-HH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE-LAQQIEKVMRALGDYMGVKVHACVGGTS----V-RE 150 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~----~-~~ 150 (413)
...+++..++|.|||.+++..++..+.. +.+++++-=.+. ....-.+.+.++ ++.+.....+.. . ..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~---G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~~~~~ 100 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH---GKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQNREA 100 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT---TCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGGGHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCCCcHH
Confidence 3469999999999999998877776654 348888832221 000001112222 222222111111 0 00
Q ss_pred HHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC--cHHHHHHHHhhCCCCceEEEEeeeCChhHH
Q 015093 151 DQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG--FKDQIYDIFQHLPGKIQVGVFSATMPPEAL 228 (413)
Q Consensus 151 ~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~ 228 (413)
..... -..|...... +....+++||+||+-.....+ -...+..++...+....+|+.+--+++.+.
T Consensus 101 ~~~~a----------~~~l~~a~~~--l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~ 168 (196)
T 1g5t_A 101 DTAAC----------MAVWQHGKRM--LADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDIL 168 (196)
T ss_dssp HHHHH----------HHHHHHHHHH--TTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHH
T ss_pred HHHHH----------HHHHHHHHHH--HhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHH
Confidence 00000 1122222221 223458999999997643322 345677778888777777765555555444
Q ss_pred H
Q 015093 229 E 229 (413)
Q Consensus 229 ~ 229 (413)
+
T Consensus 169 e 169 (196)
T 1g5t_A 169 D 169 (196)
T ss_dssp H
T ss_pred H
Confidence 3
No 143
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.80 E-value=0.018 Score=52.32 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=15.6
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
++.+++.||+|+|||..+
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456999999999999765
No 144
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.68 E-value=0.036 Score=44.33 Aligned_cols=19 Identities=32% Similarity=0.295 Sum_probs=15.9
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
..++++.||+|+|||..+-
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4569999999999997653
No 145
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.12 Score=46.84 Aligned_cols=53 Identities=25% Similarity=0.333 Sum_probs=31.1
Q ss_pred ccCccCCCCCHHHHHHHHhC-C--CCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHH
Q 015093 39 YDSFDSMGLKENLLRGIYAY-G--FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~-~--~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
-.+|++.+=-+...+.+... - +..|-.++...+ ...+.+|+.||+|+|||+.+
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHH
Confidence 45677776445555555432 1 112222333332 23577999999999999876
No 146
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.61 E-value=0.052 Score=48.08 Aligned_cols=52 Identities=10% Similarity=-0.009 Sum_probs=28.5
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHHHHh-hhhh-hhCCCcEEEeCCCCCchhHHH
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQR-GIVP-FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~-~~~~-~~~~~~~lv~~~tGsGKT~~~ 94 (413)
..|+.+.-.+...+.+...-. ++.... .+.. ....+.+++.||+|+|||..+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVI---LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHH---HHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 456666656666666654210 111100 0011 112356999999999999776
No 147
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.51 E-value=0.1 Score=43.64 Aligned_cols=38 Identities=8% Similarity=0.270 Sum_probs=23.0
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEee
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSA 221 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (413)
..+||+||+|.+.. .....+...+...+....+++.|.
T Consensus 127 ~~vlviDe~~~l~~-~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 127 FKVYLIDEVHMLSR-HSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SEEEEEETGGGSCH-HHHHHHHHHHHSCCTTEEEEEEES
T ss_pred ceEEEEECcccccH-HHHHHHHHHHhcCCCceEEEEEeC
Confidence 47999999998632 234445555555555555554443
No 148
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.41 E-value=0.05 Score=48.58 Aligned_cols=38 Identities=18% Similarity=0.387 Sum_probs=26.6
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..+++|+||+|.+.. .....+.+++...+....+++.+
T Consensus 110 ~~~viiiDe~~~l~~-~~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 110 GFKLIILDEADAMTN-AAQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp SCEEEEETTGGGSCH-HHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEeCCCCCCH-HHHHHHHHHHhcCCCCeEEEEEe
Confidence 368999999998743 23556777777777666666544
No 149
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.32 E-value=0.19 Score=46.23 Aligned_cols=56 Identities=21% Similarity=0.164 Sum_probs=31.4
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc-cc-HHHHHHHHHHHHHhhcccCceEE
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA-PT-RELAQQIEKVMRALGDYMGVKVH 140 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~-P~-~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
-+++.+++|+|||.+....+.. +.. . +.+++++. .+ +.- ..+.++.++...++.+.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~-l~~-~-G~kVllv~~D~~R~a---a~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARY-FQK-R-GYKVGVVCSDTWRPG---AYHQLRQLLDRYHIEVF 159 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH-HHT-T-TCCEEEEECCCSSTH---HHHHHHHHHGGGTCEEE
T ss_pred EEEEECcCCCCHHHHHHHHHHH-HHH-C-CCeEEEEeCCCcchh---HHHHHHHHHHhcCCcEE
Confidence 4888999999999876544432 322 2 33555554 32 222 23445555555565543
No 150
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.23 E-value=0.066 Score=48.37 Aligned_cols=38 Identities=8% Similarity=0.266 Sum_probs=24.0
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
...++|+||+|.+... ....+.+.+...+....+++.|
T Consensus 119 ~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEE
T ss_pred CeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 3579999999987432 3455566666655555455443
No 151
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.19 E-value=0.2 Score=42.59 Aligned_cols=18 Identities=22% Similarity=0.195 Sum_probs=15.6
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+.+++.||+|+|||..+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 466999999999999765
No 152
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.01 E-value=0.015 Score=51.33 Aligned_cols=17 Identities=41% Similarity=0.515 Sum_probs=14.7
Q ss_pred cEEEeCCCCCchhHHHH
Q 015093 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~ 95 (413)
++++.||+|+|||..+-
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 49999999999997653
No 153
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.89 E-value=0.1 Score=48.63 Aligned_cols=42 Identities=17% Similarity=0.067 Sum_probs=27.4
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
+..|.-++|.|++|+|||..++..+...... .+.+++|+..-
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E 241 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLE 241 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECC
Confidence 3445669999999999997765544443322 13367777643
No 154
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.88 E-value=0.063 Score=53.47 Aligned_cols=79 Identities=20% Similarity=0.190 Sum_probs=66.7
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhh----CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-ccccCCCCCCCCEEE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRS----RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 352 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d~~~~~~vi 352 (413)
.+.+++|.+|++..|.+.++.+.+ .++.+..++|+++..++...++.+.+|+.+|+|+|. .+...+++.++..||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 346899999999988888777654 378999999999999999999999999999999996 555677888888888
Q ss_pred EcCC
Q 015093 353 NYDL 356 (413)
Q Consensus 353 ~~~~ 356 (413)
+-..
T Consensus 496 IDEa 499 (780)
T 1gm5_A 496 IDEQ 499 (780)
T ss_dssp EESC
T ss_pred eccc
Confidence 6554
No 155
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.84 E-value=0.02 Score=53.23 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=14.9
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
.++++.||+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 35999999999999765
No 156
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.81 E-value=0.17 Score=44.25 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=16.5
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.++.+++.||+|+|||..+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCSEEEEECSSSSSHHHHH
T ss_pred CCceEEEECCCCcCHHHHH
Confidence 4677999999999999775
No 157
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.80 E-value=0.054 Score=48.07 Aligned_cols=51 Identities=27% Similarity=0.253 Sum_probs=32.6
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVM 128 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~ 128 (413)
+..|.-++|.|++|+|||..++-.+..... .+.+++|+..- .-..|...++
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS-SCHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC-CCHHHHHHHH
Confidence 344566999999999999876555544433 23477777653 3345555544
No 158
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.78 E-value=0.25 Score=45.24 Aligned_cols=53 Identities=21% Similarity=0.174 Sum_probs=30.1
Q ss_pred ccCccCCCCCHHHHHHHHhC---CCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHH
Q 015093 39 YDSFDSMGLKENLLRGIYAY---GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
-.+|++.+--+...+.+... .+..|-.++...+ ...+.+|+.||+|+|||..+
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHH
Confidence 35677775444444444331 1112222333222 23567999999999999876
No 159
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.74 E-value=0.065 Score=49.84 Aligned_cols=115 Identities=18% Similarity=0.085 Sum_probs=55.9
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHH-
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRI- 154 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 154 (413)
.|.-++|.|++|+|||..++..+...... .+.+++++..- .-..|+..++.......+..- ...|......+.+.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~slE-~~~~~l~~R~~~~~~~i~~~~-l~~g~l~~~~~~~~~ 274 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSLE-MPAAQLTLRMMCSEARIDMNR-VRLGQLTDRDFSRLV 274 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEESS-SCHHHHHHHHHHHHTTCCTTT-CCGGGCCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEECC-CCHHHHHHHHHHHHcCCCHHH-HhCCCCCHHHHHHHH
Confidence 45568999999999997765555444322 13367777653 223444444432211111100 01122222222111
Q ss_pred -----HhcCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhhc
Q 015093 155 -----LSAGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS 196 (413)
Q Consensus 155 -----~~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 196 (413)
+. ...+.+. |.+.+...+..... ...+++||+|..+.+..
T Consensus 275 ~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~~-~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 275 DVASRLS-EAPIYIDDTPDLTLMEVRARARRLVS-QNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHHHHH-TSCEEEECCTTCBHHHHHHHHHHHHH-HSCCCEEEEECGGGCBC
T ss_pred HHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEcChhhcCC
Confidence 11 2345553 34445433322100 01378999999998754
No 160
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.73 E-value=0.063 Score=49.24 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=14.8
Q ss_pred CcEEE--eCCCCCchhHHHH
Q 015093 78 LDVIQ--QAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~lv--~~~tGsGKT~~~~ 95 (413)
..++| .||+|+|||..+-
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 45888 9999999997653
No 161
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.66 E-value=0.086 Score=48.07 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.9
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+.+++.||+|+|||..+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999775
No 162
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.62 E-value=0.16 Score=45.67 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.0
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
.+.+++.||+|+|||..+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4569999999999997763
No 163
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.58 E-value=0.081 Score=50.26 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=26.1
Q ss_pred CccEEEEccchhhhccC--cHHHHHHHHhhCCCCceEEEEeeeCC
Q 015093 182 YIRMFVLDEADEMLSRG--FKDQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
...+|++||+|.+.... ....+..++... ..++++++++..
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~ 190 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERN 190 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTT
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence 35799999999875432 224555555543 455777777653
No 164
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.45 E-value=0.14 Score=48.00 Aligned_cols=42 Identities=24% Similarity=0.399 Sum_probs=27.6
Q ss_pred cEEEEccchhhhccC----------cHHHHHHHHhhCCCCceEEEEeeeCCh
Q 015093 184 RMFVLDEADEMLSRG----------FKDQIYDIFQHLPGKIQVGVFSATMPP 225 (413)
Q Consensus 184 ~~iIiDE~h~~~~~~----------~~~~~~~~~~~~~~~~~~i~lSAT~~~ 225 (413)
++|++||+|.+.... ....+...+........++++.||-.+
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 689999999876421 223455555555556667778888654
No 165
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.44 E-value=0.36 Score=40.38 Aligned_cols=26 Identities=19% Similarity=0.001 Sum_probs=19.9
Q ss_pred hCCCcEEEeCCCCCchhHHHHHHHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATFCSGILQ 100 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~~i~~ 100 (413)
..|.-+.+.+|+|+|||..+...+..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34667999999999999876554443
No 166
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=94.23 E-value=0.27 Score=45.90 Aligned_cols=76 Identities=16% Similarity=0.089 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCC
Q 015093 267 LDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQ 346 (413)
Q Consensus 267 ~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 346 (413)
...+...++. .+.+++|.+.+...++.+.+.|.+.++.+...... . .+. ...+.|+...+..|+-+|
T Consensus 371 ~~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~-~---------~~~--~g~v~i~~g~L~~GF~~p 437 (483)
T 3hjh_A 371 LDALRKFLET-FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL-D---------EAS--DRGRYLMIGAAEHGFVDT 437 (483)
T ss_dssp THHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG-G---------GCC--TTCEEEEESCCCSCEEET
T ss_pred HHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCch-h---------hcC--CCcEEEEEcccccCcccC
Confidence 3455555543 24689999999999999999999988765544321 1 112 235677778899999999
Q ss_pred CCCEEEEcC
Q 015093 347 QVSLVINYD 355 (413)
Q Consensus 347 ~~~~vi~~~ 355 (413)
....+|+.+
T Consensus 438 ~~klaVITE 446 (483)
T 3hjh_A 438 VRNLALICE 446 (483)
T ss_dssp TTTEEEEEH
T ss_pred CCCEEEEEc
Confidence 988888754
No 167
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.20 E-value=0.3 Score=45.34 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=15.8
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+.+++.||+|+|||..+
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999775
No 168
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.17 E-value=0.23 Score=43.71 Aligned_cols=53 Identities=15% Similarity=-0.018 Sum_probs=33.4
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
+..|.-++|.|++|+|||..++..+......+ .++++++-- .-..|+..++..
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESS-SCHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECC-CCHHHHHHHHHH
Confidence 44466699999999999977655554443322 477777643 334455555443
No 169
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.96 E-value=0.21 Score=43.95 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=15.5
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
...+++.||+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 356999999999999765
No 170
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.77 E-value=0.25 Score=45.35 Aligned_cols=80 Identities=10% Similarity=0.198 Sum_probs=65.3
Q ss_pred cCCCcEEEEEcCcccHHHHHHHHhh---CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-ccc---cCCCCCCCC
Q 015093 277 LAITQSVIFVNTRRKVDWLTDQMRS---RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LLA---RGIDVQQVS 349 (413)
Q Consensus 277 ~~~~~~lIf~~~~~~a~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~---~G~d~~~~~ 349 (413)
..++++||.+|++..+.++++.+++ .++.+..++|+.+..++....+.+..++.+|+|+|+ .+. .-++...+.
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3557899999999999999999988 578999999999999888888999999899999996 221 124556788
Q ss_pred EEEEcCC
Q 015093 350 LVINYDL 356 (413)
Q Consensus 350 ~vi~~~~ 356 (413)
.+|+-+.
T Consensus 142 ~iViDEa 148 (414)
T 3oiy_A 142 FVFVDDV 148 (414)
T ss_dssp EEEESCH
T ss_pred EEEEeCh
Confidence 8876544
No 171
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.18 E-value=0.12 Score=45.17 Aligned_cols=42 Identities=10% Similarity=-0.067 Sum_probs=29.6
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHH
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELA 121 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~ 121 (413)
-++|.+|+|+|||..++..+.+.... ..+.+++|+..-.++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-YPDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-CTTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEeccchhh
Confidence 58999999999998877666554432 1244788888765553
No 172
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.08 E-value=3.4 Score=36.50 Aligned_cols=53 Identities=19% Similarity=0.264 Sum_probs=30.0
Q ss_pred hHHHHHHHHcCCCCCCCccEEEEccchhhhc---cCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 166 PGRVFDMLRRQSLRPDYIRMFVLDEADEMLS---RGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~---~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
...+...+..... .--+||+||+|.+.. ..+...+..+....+ +..++ ++++.
T Consensus 124 ~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i-~~g~~ 179 (357)
T 2fna_A 124 FANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFI-MSGSE 179 (357)
T ss_dssp HHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEE-EEESS
T ss_pred HHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEE-EEcCc
Confidence 4455555544221 135899999999753 345556666655543 44444 55554
No 173
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.93 E-value=0.26 Score=44.11 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=19.0
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcc
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~ 103 (413)
.+..++|.||||||||... ..++..+.
T Consensus 122 ~~g~i~I~GptGSGKTTlL-~~l~g~~~ 148 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL-AAMLDYLN 148 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH-HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHhccc
Confidence 3556999999999999653 44444443
No 174
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.67 E-value=0.46 Score=47.27 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=15.8
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+.+|+.||+|+|||+.+
T Consensus 238 p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999765
No 175
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.52 E-value=0.45 Score=47.53 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=14.9
Q ss_pred cEEEeCCCCCchhHHHH
Q 015093 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~ 95 (413)
++++.||||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999998763
No 176
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.51 E-value=0.16 Score=46.71 Aligned_cols=55 Identities=15% Similarity=0.253 Sum_probs=34.9
Q ss_pred ccccCccCCCCCHHHHHHHHhC---CCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHH
Q 015093 37 EVYDSFDSMGLKENLLRGIYAY---GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
.+..+|++.+--+...+.+... .+..|-.++...++ ..+.+|+.||+|+|||+.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH
Confidence 3456788887666666666542 11233333333332 2577999999999999875
No 177
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=91.13 E-value=0.75 Score=48.14 Aligned_cols=78 Identities=19% Similarity=0.229 Sum_probs=64.8
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhh----CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-ccccCCCCCCCCEEE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRS----RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 352 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d~~~~~~vi 352 (413)
.+.+++|.+|++..+.+.++.+.+ .+..+..+++..+..++...++.+..|+.+|+|+|. .+...+.+.++..+|
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 456899999999988888877764 357888999999999999999999999999999995 666667887887777
Q ss_pred EcC
Q 015093 353 NYD 355 (413)
Q Consensus 353 ~~~ 355 (413)
+-.
T Consensus 731 iDE 733 (1151)
T 2eyq_A 731 VDE 733 (1151)
T ss_dssp EES
T ss_pred Eec
Confidence 543
No 178
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.05 E-value=1.4 Score=39.96 Aligned_cols=40 Identities=10% Similarity=-0.136 Sum_probs=25.1
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccc---cCceeEEEEccc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYE---SLQCQALVLAPT 117 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~---~~~~~~lvl~P~ 117 (413)
.-+.|.+|+|+|||......+...+... ..+.+++++.-.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 4589999999999977654444433321 123467777643
No 179
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=91.00 E-value=1.4 Score=34.17 Aligned_cols=75 Identities=13% Similarity=0.240 Sum_probs=54.3
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
..++||.|+++..+....+.+... +..+..++|+.......... .....|+|+|. ....++++..+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD------VAARGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTTTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC------hhhcCCchhcC
Confidence 348999999999998888888774 67888999987655544332 34678999992 23456677778
Q ss_pred cEEEEccch
Q 015093 184 RMFVLDEAD 192 (413)
Q Consensus 184 ~~iIiDE~h 192 (413)
++||.-+..
T Consensus 105 ~~Vi~~~~p 113 (163)
T 2hjv_A 105 SLVINYDLP 113 (163)
T ss_dssp SEEEESSCC
T ss_pred CEEEEeCCC
Confidence 888865543
No 180
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=90.88 E-value=2.4 Score=33.23 Aligned_cols=75 Identities=9% Similarity=0.073 Sum_probs=53.8
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
..++||.|+++.-+....+.+... +..+..++|+.........+ .....|+|+|. ....+++...+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------LFGRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS------CCSTTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC------chhcCcchhhC
Confidence 348999999999998888887764 67888899887655544332 34678999993 22445666677
Q ss_pred cEEEEccch
Q 015093 184 RMFVLDEAD 192 (413)
Q Consensus 184 ~~iIiDE~h 192 (413)
++||.-+..
T Consensus 101 ~~Vi~~d~p 109 (172)
T 1t5i_A 101 NIAFNYDMP 109 (172)
T ss_dssp SEEEESSCC
T ss_pred CEEEEECCC
Confidence 888765544
No 181
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.49 E-value=0.2 Score=42.07 Aligned_cols=51 Identities=20% Similarity=0.144 Sum_probs=31.6
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
.|.-+++.||+|+|||..++..+...... +.+++++..... ..+..+.+.+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~~-~~~~~~~~~~ 72 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEEH-PVQVRQNMAQ 72 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSSC-HHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccCC-HHHHHHHHHH
Confidence 46678999999999998765444443322 336777764332 3444444443
No 182
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.45 E-value=0.19 Score=42.27 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=31.4
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
|.-+++.|++|+|||..++-.+.+.+... +.++++++-. .-..+..+.+.+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeeccc-CCHHHHHHHHHHc
Confidence 45589999999999977655444433222 2356666643 3345555555443
No 183
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=90.23 E-value=1.7 Score=35.60 Aligned_cols=74 Identities=8% Similarity=0.212 Sum_probs=54.6
Q ss_pred CcEEEEEcCcccHHHHHHHHhhC-----CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-cc-----ccCCCCCCC
Q 015093 280 TQSVIFVNTRRKVDWLTDQMRSR-----DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LL-----ARGIDVQQV 348 (413)
Q Consensus 280 ~~~lIf~~~~~~a~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~-----~~G~d~~~~ 348 (413)
.++||.+|+++.+.++++.+++. +..+..++|+.+..++.+ .+.++..+|+|+|. .+ ...+++..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999888877653 678899999988665543 34456678999995 22 234667788
Q ss_pred CEEEEcCC
Q 015093 349 SLVINYDL 356 (413)
Q Consensus 349 ~~vi~~~~ 356 (413)
+.+|+-+.
T Consensus 160 ~~lViDEa 167 (220)
T 1t6n_A 160 KHFILDEC 167 (220)
T ss_dssp CEEEEESH
T ss_pred CEEEEcCH
Confidence 88886543
No 184
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=90.02 E-value=1.4 Score=34.62 Aligned_cols=73 Identities=19% Similarity=0.217 Sum_probs=53.0
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
..++||.|+++..+....+.+.+. +..+..++|+.......... .+...|+|+|. ....++++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN------VCARGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC------SCCTTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec------chhcCCCcccC
Confidence 458999999999988888777664 67888999987765544333 34678999992 23456677778
Q ss_pred cEEEEcc
Q 015093 184 RMFVLDE 190 (413)
Q Consensus 184 ~~iIiDE 190 (413)
++||.-+
T Consensus 104 ~~Vi~~d 110 (175)
T 2rb4_A 104 TIVVNFD 110 (175)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 8888544
No 185
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=89.92 E-value=0.5 Score=49.19 Aligned_cols=79 Identities=10% Similarity=0.220 Sum_probs=64.8
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhh---CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-cccc---CCCCCCCCE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRS---RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LLAR---GIDVQQVSL 350 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~---G~d~~~~~~ 350 (413)
.+.++||.+|+++.|.++++.+++ .++.+..++|+.+..++....+.+.+|..+|+|+|+ .+.. -+++..+..
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 456899999999999999999998 567899999999998888888999999999999996 2211 145567888
Q ss_pred EEEcCC
Q 015093 351 VINYDL 356 (413)
Q Consensus 351 vi~~~~ 356 (413)
+|+-+.
T Consensus 200 lViDEa 205 (1104)
T 4ddu_A 200 VFVDDV 205 (1104)
T ss_dssp EEESCH
T ss_pred EEEeCC
Confidence 887544
No 186
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=89.81 E-value=2.1 Score=33.17 Aligned_cols=75 Identities=16% Similarity=0.249 Sum_probs=53.8
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
..++||.|+++.-+....+.+... +..+..++|+.......... .....|+|+|. ....++++..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD------LLARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG------GGTTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC------hhhcCCCcccC
Confidence 348999999999998888877764 67788899887755544332 34678999992 23456677778
Q ss_pred cEEEEccch
Q 015093 184 RMFVLDEAD 192 (413)
Q Consensus 184 ~~iIiDE~h 192 (413)
++||.-+..
T Consensus 100 ~~Vi~~~~p 108 (165)
T 1fuk_A 100 SLVINYDLP 108 (165)
T ss_dssp SEEEESSCC
T ss_pred CEEEEeCCC
Confidence 887775543
No 187
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.70 E-value=0.3 Score=42.77 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=16.3
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
++++++.||+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997654
No 188
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=89.57 E-value=1.9 Score=36.17 Aligned_cols=74 Identities=14% Similarity=0.281 Sum_probs=54.1
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC----CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-cc------ccCCCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR----DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LL------ARGIDVQ 346 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~------~~G~d~~ 346 (413)
...++||.+|+++.+.++++.+++. +..+..++|+.+..++...+ .+..+|+|+|. .+ ..++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 4457999999999998888777653 78888999998765544332 24678999995 21 1457788
Q ss_pred CCCEEEEcC
Q 015093 347 QVSLVINYD 355 (413)
Q Consensus 347 ~~~~vi~~~ 355 (413)
.++.+|+-+
T Consensus 186 ~~~~lViDE 194 (249)
T 3ber_A 186 ALKYLVMDE 194 (249)
T ss_dssp TCCEEEECS
T ss_pred ccCEEEEcC
Confidence 888888654
No 189
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.20 E-value=0.27 Score=46.33 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=20.2
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhc
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l 102 (413)
+..|..++|.||||||||... ..++..+
T Consensus 257 v~~g~~i~I~GptGSGKTTlL-~aL~~~i 284 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTL-NAIMMFI 284 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHH-HHHGGGS
T ss_pred HhCCCEEEEECCCCCCHHHHH-HHHHhhC
Confidence 456778999999999999653 3344333
No 190
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.02 E-value=0.28 Score=45.09 Aligned_cols=55 Identities=25% Similarity=0.306 Sum_probs=31.1
Q ss_pred ccccCccCCCCCHHHHHHHHhC---CCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHH
Q 015093 37 EVYDSFDSMGLKENLLRGIYAY---GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
.+-.+|++.+--+...+.+... .+..|-.++...+ ...+.+|+.||+|+|||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHHH
Confidence 3445677776444444444331 1112222222222 23577999999999999876
No 191
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=88.95 E-value=2 Score=35.10 Aligned_cols=73 Identities=25% Similarity=0.312 Sum_probs=53.6
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
+.++||.|+++.-+....+.+... +..+..++|+.........+ .+..+|+|+|. +...+++...+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD------VAARGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT------TTTCSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC------hhhcCCCCccC
Confidence 448999999999988888877765 77888999987765554433 34678999992 33456777778
Q ss_pred cEEEEcc
Q 015093 184 RMFVLDE 190 (413)
Q Consensus 184 ~~iIiDE 190 (413)
++||.=+
T Consensus 101 ~~Vi~~~ 107 (212)
T 3eaq_A 101 DLVVHYR 107 (212)
T ss_dssp SEEEESS
T ss_pred cEEEECC
Confidence 8877533
No 192
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.80 E-value=0.44 Score=43.91 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=31.7
Q ss_pred ccCccCCCCCHHHHHHHHhCC---CCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHH
Q 015093 39 YDSFDSMGLKENLLRGIYAYG---FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
-.+|++.+--+...+.+...= +..|-.++...+ ...+.+|+.||+|+|||+.+
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi---~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI---DPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCSEEEECSCTTSSHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC---CCCCceEeeCCCCCcHHHHH
Confidence 466777765566666665421 112222222222 23577999999999999776
No 193
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=88.37 E-value=0.79 Score=48.24 Aligned_cols=55 Identities=24% Similarity=0.136 Sum_probs=42.6
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccc---------cCceeEEEEcccHHHHHHHHHHHHHhh
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYE---------SLQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~---------~~~~~~lvl~P~~~l~~q~~~~~~~~~ 132 (413)
+..+|.|+.|||||.+...-++..+... -.-.++|+||=|++-+.++.+++.+..
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 3469999999999998877777766532 122479999999999999988887653
No 194
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=88.36 E-value=0.87 Score=43.21 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=54.8
Q ss_pred CCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD 337 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~ 337 (413)
.+++||.+|++..+....+.|++.+..+..+++..+..++......+..+..+++++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 46899999999999999999999999999999999999999899999999999999996
No 195
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=88.16 E-value=0.64 Score=40.96 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=32.9
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccc---------cCc----eeEEEEcccHHH-HHHHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYE---------SLQ----CQALVLAPTREL-AQQIEKVMRAL 131 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~---------~~~----~~~lvl~P~~~l-~~q~~~~~~~~ 131 (413)
|.-++|.+++|+|||..++..+.+..... ..+ .+++|+.--..+ ..+..+.++++
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 34589999999999987766555432221 111 578887755432 34444444443
No 196
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=88.05 E-value=5.4 Score=31.83 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=53.1
Q ss_pred eeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCcc
Q 015093 109 CQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYIR 184 (413)
Q Consensus 109 ~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~~ 184 (413)
.++||.|+++.-+....+.++.. +..+..++|+.........+ .....|+|+|. ....+++...++
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------~~~~Gldi~~v~ 124 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD------VASKGLDFPAIQ 124 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH------HHHTTCCCCCCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC------chhcCCCcccCC
Confidence 47999999999999888888765 67888899987665544332 35678999992 223466777788
Q ss_pred EEEEccc
Q 015093 185 MFVLDEA 191 (413)
Q Consensus 185 ~iIiDE~ 191 (413)
+||.-+.
T Consensus 125 ~VI~~d~ 131 (191)
T 2p6n_A 125 HVINYDM 131 (191)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 8776443
No 197
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.99 E-value=0.53 Score=38.47 Aligned_cols=31 Identities=19% Similarity=0.089 Sum_probs=25.4
Q ss_pred cHHHHhhhhhhhCCCcEEEeCCCCCchhHHH
Q 015093 64 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 64 ~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
+.-|..+++.+..|.-+.+.||.|+|||...
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 3446778888888888999999999999654
No 198
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.99 E-value=0.76 Score=41.91 Aligned_cols=54 Identities=26% Similarity=0.316 Sum_probs=31.2
Q ss_pred cccCccCCCCCHHHHHHHHhC---CCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHH
Q 015093 38 VYDSFDSMGLKENLLRGIYAY---GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
+-.+|++.+=-+...+.+... .+..|-.++...++ -.+.+|+.||+|+|||+.+
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHHH
Confidence 446777775344444444321 11233333333332 2477999999999999876
No 199
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=87.95 E-value=5.8 Score=34.23 Aligned_cols=21 Identities=24% Similarity=0.140 Sum_probs=15.7
Q ss_pred CCCcEEEeCCCCCchhHHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~ 96 (413)
.++.+.+.++.|+|||..+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~ 117 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAK 117 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345577789999999976543
No 200
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.93 E-value=0.28 Score=39.52 Aligned_cols=19 Identities=42% Similarity=0.618 Sum_probs=15.7
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
++-+++.+|||+|||..++
T Consensus 34 g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TEEEEEECCCTTTTHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4568999999999997653
No 201
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=87.81 E-value=0.59 Score=43.88 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=20.2
Q ss_pred hCCCcEEEeCCCCCchhHHHHHHHHHhc
Q 015093 75 CKGLDVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~~i~~~l 102 (413)
.++.+++|.|+||||||.+.-..+...+
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999977544444333
No 202
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=87.79 E-value=0.33 Score=51.13 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=31.5
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
-+|.|+.|||||.+.+.-+...+.....+.+++++||...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc
Confidence 4789999999999987777766655444468999999764
No 203
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.77 E-value=0.44 Score=39.11 Aligned_cols=36 Identities=14% Similarity=-0.008 Sum_probs=24.2
Q ss_pred hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
..|.-+++.+|+|+|||..+...+. ..+.+++++.-
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~------~~~~~v~~i~~ 53 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL------LSGKKVAYVDT 53 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH------HHCSEEEEEES
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH------HcCCcEEEEEC
Confidence 3466799999999999977654433 12336666654
No 204
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=87.75 E-value=0.36 Score=39.18 Aligned_cols=17 Identities=18% Similarity=-0.003 Sum_probs=14.8
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
+.+++.||+|+|||..+
T Consensus 59 n~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFG 75 (212)
T ss_dssp SEEEEESCGGGCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45999999999999765
No 205
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=87.70 E-value=0.43 Score=43.02 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=16.8
Q ss_pred hhCCCcEEEeCCCCCchhHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~ 94 (413)
+..|+.+++.||||||||...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 345667999999999999654
No 206
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=87.60 E-value=0.97 Score=38.35 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCCCCcHHH-HhhhhhhhCCC-----cEEEeCCCCCchhHHHH
Q 015093 49 ENLLRGIYAYGFEKPSAIQ-QRGIVPFCKGL-----DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 49 ~~~~~~l~~~~~~~~~~~Q-~~~~~~~~~~~-----~~lv~~~tGsGKT~~~~ 95 (413)
.++.+.|+-.|+. +.+ ..++..+++++ .+++.||+|+|||..+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3667777776664 333 33455666653 49999999999998764
No 207
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=87.60 E-value=0.3 Score=43.06 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=15.7
Q ss_pred CcEEEeCCCCCchhHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~ 96 (413)
+-++|.||||+|||..+..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4589999999999987643
No 208
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=87.52 E-value=0.49 Score=39.18 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=24.6
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
+..|.-+++.||+|+|||..+...+.... .. +.+++++..
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~-~~--~~~v~~~~~ 59 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGL-RD--GDPCIYVTT 59 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHH-HH--TCCEEEEES
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHH-HC--CCeEEEEEc
Confidence 34567789999999999976543332222 21 235666653
No 209
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=87.49 E-value=5.2 Score=35.15 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=30.2
Q ss_pred ccEEEEccchhhh-ccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHh
Q 015093 183 IRMFVLDEADEML-SRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKF 234 (413)
Q Consensus 183 ~~~iIiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~ 234 (413)
.+++++|.+.... .......+..+.+.+.....++.+.++...+.....+.+
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 4678899876532 223344455555555556667778877765555444443
No 210
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=87.46 E-value=0.47 Score=43.85 Aligned_cols=44 Identities=11% Similarity=0.230 Sum_probs=29.1
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQ 122 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~ 122 (413)
...+++|.|+||||||... ..++..+... +..++|+=|.-+...
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~--g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLR--GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT--TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHC--CCcEEEEeCCCchhH
Confidence 3578999999999999875 3333333222 336777777766643
No 211
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=87.24 E-value=0.92 Score=43.74 Aligned_cols=59 Identities=3% Similarity=0.027 Sum_probs=53.7
Q ss_pred CCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHH--hcCCCeEEEEeC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREF--RSGSSRVLITTD 337 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f--~~~~~~vli~t~ 337 (413)
.+.+||.+|++..+....+.|.+.|+.+..++|+.+..++..+...+ ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 46899999999999999999999999999999999999998888888 467889999997
No 212
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.11 E-value=0.97 Score=41.35 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=22.0
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEE
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVL 114 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl 114 (413)
+.-++|.||||||||... ..++..+... ..+++++
T Consensus 167 ggii~I~GpnGSGKTTlL-~allg~l~~~--~g~I~~~ 201 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTL-YAGLQELNSS--ERNILTV 201 (418)
T ss_dssp SEEEEEECSTTSCHHHHH-HHHHHHHCCT--TSCEEEE
T ss_pred CCeEEEECCCCCCHHHHH-HHHHhhcCCC--CCEEEEe
Confidence 455899999999999653 4444444332 2245554
No 213
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=86.99 E-value=0.45 Score=37.79 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.5
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
++.+++.||+|+|||..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 356999999999999765
No 214
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=86.95 E-value=1.9 Score=35.95 Aligned_cols=73 Identities=8% Similarity=0.102 Sum_probs=53.7
Q ss_pred CCcEEEEEcCcccHHHHHHHHhh----CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-----ccc-cCCCCCCC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRS----RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-----LLA-RGIDVQQV 348 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-----~~~-~G~d~~~~ 348 (413)
+.++||.+|+++.+.++++.+++ .+..+..++|+.+...+...+.. ..+|+|+|+ .+. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45799999999998888777765 47888999999887666544432 478999996 122 34577788
Q ss_pred CEEEEcC
Q 015093 349 SLVINYD 355 (413)
Q Consensus 349 ~~vi~~~ 355 (413)
+.+|+-+
T Consensus 178 ~~lViDE 184 (242)
T 3fe2_A 178 TYLVLDE 184 (242)
T ss_dssp CEEEETT
T ss_pred cEEEEeC
Confidence 8888654
No 215
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=86.86 E-value=0.42 Score=38.71 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=16.9
Q ss_pred CCCcEEEeCCCCCchhHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~ 95 (413)
.++.+++.|++|||||..+-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 46679999999999998763
No 216
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=86.85 E-value=0.79 Score=40.40 Aligned_cols=55 Identities=18% Similarity=0.108 Sum_probs=32.4
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccc---cCceeEEEEcccHHH-HHHHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYE---SLQCQALVLAPTREL-AQQIEKVMRAL 131 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~---~~~~~~lvl~P~~~l-~~q~~~~~~~~ 131 (413)
|.-+++.||+|+|||..++..+....... ..+.+++|+.--..+ ..+..+.++++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999987766555433221 113477777654332 33444444443
No 217
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.76 E-value=0.37 Score=41.05 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=17.2
Q ss_pred hhCCCcEEEeCCCCCchhHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~ 94 (413)
+..|+.+++.||+|||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 446777999999999999654
No 218
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=86.76 E-value=1.4 Score=35.48 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=51.0
Q ss_pred CCcEEEEEcCcccHHHHHHHHhhC-----CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-c----ccc-CCCCCC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRSR-----DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-L----LAR-GIDVQQ 347 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~----~~~-G~d~~~ 347 (413)
..+++|.+|++..+.++++.+.+. +..+..++|+.+..+.... + .+..+|+|+|. . +.. .+++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999998888877653 5678888988876543322 2 34678999996 2 222 346677
Q ss_pred CCEEEEcC
Q 015093 348 VSLVINYD 355 (413)
Q Consensus 348 ~~~vi~~~ 355 (413)
++.+|+-+
T Consensus 147 ~~~lViDE 154 (206)
T 1vec_A 147 VQMIVLDE 154 (206)
T ss_dssp CCEEEEET
T ss_pred CCEEEEEC
Confidence 88887643
No 219
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=86.72 E-value=2 Score=34.22 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=50.7
Q ss_pred CCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHH----HhcCCcEE
Q 015093 87 GTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRI----LSAGVHVV 162 (413)
Q Consensus 87 GsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ii 162 (413)
.+.|-.. +.-++... ..+.++||.|+++.-+....+.++.. +..+..++|+......... ......|+
T Consensus 29 ~~~K~~~-L~~ll~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 100 (185)
T 2jgn_A 29 ESDKRSF-LLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPIL 100 (185)
T ss_dssp GGGHHHH-HHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEE
T ss_pred cHHHHHH-HHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 4567543 33344332 23458999999999988888877764 6778888887654433222 24567899
Q ss_pred EeChHHHHHHHHcCCCCCCCccEEEEcc
Q 015093 163 VGTPGRVFDMLRRQSLRPDYIRMFVLDE 190 (413)
Q Consensus 163 i~T~~~l~~~~~~~~~~~~~~~~iIiDE 190 (413)
|+|. . ...+++...+++||.-+
T Consensus 101 vaT~-~-----~~~Gldi~~~~~VI~~d 122 (185)
T 2jgn_A 101 VATA-V-----AARGLDISNVKHVINFD 122 (185)
T ss_dssp EEEC------------CCCSBSEEEESS
T ss_pred EEcC-h-----hhcCCCcccCCEEEEeC
Confidence 9992 2 23455666778877643
No 220
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=86.27 E-value=0.47 Score=37.69 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=15.9
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.|+-+++.||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666899999999999764
No 221
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=86.25 E-value=0.51 Score=40.20 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=16.3
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.+..+++.||+|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4567999999999999765
No 222
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=86.10 E-value=0.53 Score=37.19 Aligned_cols=58 Identities=10% Similarity=0.080 Sum_probs=40.9
Q ss_pred cHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHH
Q 015093 64 SAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQ 123 (413)
Q Consensus 64 ~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q 123 (413)
.+-|..++..+... .-.+|.++-|++|+...+..++.... ..+.++.+++|+..-...
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~--~~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAR--EQGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHH--HTTCCEEEECSTTHHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHH--hcCeEEEEEcCchHHHHH
Confidence 35688888887654 34889999999999886544444322 235589999999775543
No 223
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=86.06 E-value=0.48 Score=38.50 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=17.8
Q ss_pred hhhCCCcEEEeCCCCCchhHHH
Q 015093 73 PFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 73 ~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
++..+.-+++.||+|||||..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHH
Confidence 3556778999999999999765
No 224
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=85.90 E-value=0.79 Score=41.65 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=27.9
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
.+.+++|.|+||+|||...-..+.... . .+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~--~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-M--QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-T--TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-H--CCCEEEEEeCCcC
Confidence 567899999999999976544333332 2 2447778777654
No 225
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=85.72 E-value=0.66 Score=37.59 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=16.5
Q ss_pred EEEeCCCCCchhHHHHHHHHH
Q 015093 80 VIQQAQSGTGKTATFCSGILQ 100 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~ 100 (413)
.++.|++|||||..+...+..
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 689999999999876554444
No 226
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=85.69 E-value=0.45 Score=41.48 Aligned_cols=18 Identities=28% Similarity=0.145 Sum_probs=14.8
Q ss_pred cEEEeCCCCCchhHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~ 96 (413)
-++|.||||+|||..+..
T Consensus 5 ~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHH
Confidence 478899999999977643
No 227
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=85.67 E-value=0.38 Score=45.19 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=20.7
Q ss_pred hhhhhhhCCCcEEEeCCCCCchhHHH
Q 015093 69 RGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 69 ~~~~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
.+...+..+.++++.||+|+|||..+
T Consensus 33 ~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 33 LCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHhcCCeeEeecCchHHHHHHH
Confidence 34445566889999999999999765
No 228
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=85.67 E-value=0.7 Score=41.32 Aligned_cols=39 Identities=15% Similarity=-0.001 Sum_probs=27.4
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
.++-++|.+++|+|||..++..+...... +.+++++..-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCC
Confidence 45669999999999998876655544322 3367777763
No 229
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=85.54 E-value=0.32 Score=43.04 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=18.7
Q ss_pred hhhhCCCcEEEeCCCCCchhHHH
Q 015093 72 VPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 72 ~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
..+..++++++.||+|+|||..+
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHH
Confidence 34455788999999999999765
No 230
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=85.53 E-value=0.56 Score=37.12 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=16.8
Q ss_pred CCCcEEEeCCCCCchhHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~ 95 (413)
.+..+++.|++|||||..+-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 45679999999999998763
No 231
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=85.48 E-value=1.7 Score=35.05 Aligned_cols=74 Identities=12% Similarity=0.171 Sum_probs=52.1
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-c----cc-cCCCCCCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-L----LA-RGIDVQQVS 349 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~----~~-~G~d~~~~~ 349 (413)
...+++|.+|++..+..+++.+++. +..+..++|+.+...+...+. ...+|+|+|. . +. ..+++..++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3468999999999999999988765 457778888876554433332 2577999995 1 12 346677888
Q ss_pred EEEEcC
Q 015093 350 LVINYD 355 (413)
Q Consensus 350 ~vi~~~ 355 (413)
.+|+-+
T Consensus 147 ~iViDE 152 (207)
T 2gxq_A 147 VAVLDE 152 (207)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 888644
No 232
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=85.42 E-value=0.86 Score=40.54 Aligned_cols=41 Identities=10% Similarity=-0.124 Sum_probs=26.8
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccc---cCceeEEEEcccH
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYE---SLQCQALVLAPTR 118 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~---~~~~~~lvl~P~~ 118 (413)
.-++|.||+|+|||..++..+....... ..+.+++|+....
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4489999999999987765555433221 1234777776544
No 233
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=85.42 E-value=0.64 Score=41.46 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=27.4
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
.|+-++|.+|+|+|||..++..+...... +.+++++....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E~ 99 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAEH 99 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCC
Confidence 45669999999999998776555444322 34677776543
No 234
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=85.35 E-value=0.4 Score=38.82 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=14.9
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.|+-+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667899999999999764
No 235
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.30 E-value=0.48 Score=41.20 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=14.8
Q ss_pred cEEEeCCCCCchhHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~ 96 (413)
-++|.||||+|||..+..
T Consensus 12 ~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 378899999999977643
No 236
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=85.29 E-value=0.54 Score=37.36 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=16.0
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
.+.+++.|++|||||..+-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4568999999999998764
No 237
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=85.18 E-value=0.57 Score=38.25 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=15.8
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.|+-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4566899999999999765
No 238
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=85.13 E-value=0.39 Score=37.64 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=13.5
Q ss_pred EEEeCCCCCchhHHH
Q 015093 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~ 94 (413)
+++.|++|||||..+
T Consensus 4 I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 4 ILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999875
No 239
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=85.13 E-value=0.32 Score=38.97 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=16.5
Q ss_pred hCCCcEEEeCCCCCchhHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~ 94 (413)
.+|..+++.||+|||||..+
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35667899999999999764
No 240
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=85.03 E-value=1 Score=40.45 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=16.3
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.+.++++.||+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3467999999999999876
No 241
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=84.85 E-value=0.45 Score=37.54 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=15.2
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
+.-+++.|++|||||..+
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345899999999999776
No 242
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=84.80 E-value=0.53 Score=42.26 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=17.6
Q ss_pred hhCCCcEEEeCCCCCchhHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~ 94 (413)
+..|..++|.||||||||...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 456888999999999999653
No 243
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=84.78 E-value=0.23 Score=42.69 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=25.7
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHH-Hhhhhhh--hCCCcEEEeCCCCCchhHHH
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQ-QRGIVPF--CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q-~~~~~~~--~~~~~~lv~~~tGsGKT~~~ 94 (413)
..+|++.+--+.+.+.+...- ..|+. .+++..+ .-.+.+++.||+|+|||..+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 345666665566666554321 11111 1222221 12344999999999999764
No 244
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=84.55 E-value=0.49 Score=38.41 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=16.5
Q ss_pred hCCCcEEEeCCCCCchhHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~ 94 (413)
..|.-+.+.||+|||||..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34667899999999999765
No 245
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=84.52 E-value=0.47 Score=41.19 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=15.9
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
++.+++.||+|+|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 567999999999999765
No 246
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=84.38 E-value=1.1 Score=42.59 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=20.7
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhccc
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDY 104 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~ 104 (413)
..+++|.|.||||||.+.-..++..+..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~ 241 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFK 241 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3579999999999998765555554433
No 247
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=84.31 E-value=0.56 Score=39.71 Aligned_cols=16 Identities=19% Similarity=0.138 Sum_probs=13.9
Q ss_pred EEEeCCCCCchhHHHH
Q 015093 80 VIQQAQSGTGKTATFC 95 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~ 95 (413)
++|.||+|||||..+-
T Consensus 4 i~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 6899999999998763
No 248
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=84.23 E-value=5.4 Score=27.80 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=42.7
Q ss_pred EEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeE
Q 015093 282 SVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRV 332 (413)
Q Consensus 282 ~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 332 (413)
.++|.+..+....+.+.++..|..+..++++.+...|.+-++.|...-.++
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 467888888888999999999999999999999998888889888654443
No 249
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=84.15 E-value=1.3 Score=41.02 Aligned_cols=52 Identities=15% Similarity=-0.030 Sum_probs=33.2
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMR 129 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~ 129 (413)
+..|.-++|.|++|+|||..++-.+...... +.++++++-- .-..|+..++.
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlE-ms~~ql~~R~~ 245 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE-MGKKENIKRLI 245 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSS-SCTTHHHHHHH
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECC-CCHHHHHHHHH
Confidence 3345669999999999998776655554433 3477777653 33444444443
No 250
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=84.12 E-value=0.76 Score=39.91 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=16.0
Q ss_pred CCcEEEeCCCCCchhHHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~ 96 (413)
++.+.+.+++|+|||.....
T Consensus 105 g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45588899999999977643
No 251
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=84.01 E-value=1 Score=37.16 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=18.6
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhc
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l 102 (413)
++++.++.|.|||..++..+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 389999999999988765555443
No 252
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=83.93 E-value=0.64 Score=41.46 Aligned_cols=41 Identities=22% Similarity=0.167 Sum_probs=26.7
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
|.-++|.+|+|+|||..++..+..... .+.+++++..-..+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEeccccc
Confidence 456899999999999776544433322 23467787665443
No 253
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=83.91 E-value=1.6 Score=37.91 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.8
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
..++++.||+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 567999999999999765
No 254
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=83.75 E-value=6.3 Score=35.66 Aligned_cols=72 Identities=19% Similarity=0.269 Sum_probs=53.3
Q ss_pred CceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCC
Q 015093 107 LQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDY 182 (413)
Q Consensus 107 ~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~ 182 (413)
.+.++||.|+++.-+....+.+.+. +..+..++|+.......... ....+|+|+|. ....+++..+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA------VAARGLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH------HHHTTSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC------hhhcCCCccc
Confidence 3558999999999998888887764 67888899887765544332 35678999993 3345677777
Q ss_pred ccEEEE
Q 015093 183 IRMFVL 188 (413)
Q Consensus 183 ~~~iIi 188 (413)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888775
No 255
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=83.50 E-value=1.1 Score=37.40 Aligned_cols=75 Identities=15% Similarity=0.250 Sum_probs=45.9
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC----CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-----cccc-CCCCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR----DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-----LLAR-GIDVQQ 347 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-----~~~~-G~d~~~ 347 (413)
...++||.+|+++.+.++++.+++. +..+..++|+.+... ....+..+..+|+|+|. .+.. .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3458999999999999888888753 456777777755332 23344566688999994 2233 356777
Q ss_pred CCEEEEcC
Q 015093 348 VSLVINYD 355 (413)
Q Consensus 348 ~~~vi~~~ 355 (413)
+..+|+-+
T Consensus 174 ~~~lViDE 181 (237)
T 3bor_A 174 IKMFVLDE 181 (237)
T ss_dssp CCEEEEES
T ss_pred CcEEEECC
Confidence 88887644
No 256
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=83.48 E-value=0.58 Score=37.27 Aligned_cols=19 Identities=37% Similarity=0.690 Sum_probs=16.1
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
++..+++.|++|||||.++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3566999999999999876
No 257
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=83.34 E-value=0.89 Score=40.78 Aligned_cols=41 Identities=12% Similarity=0.019 Sum_probs=27.4
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
.|.-++|.+++|+|||..++..+...... +.+++|+..-..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E~s 113 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAEHA 113 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECCCC
Confidence 34568999999999998776555544322 336777765433
No 258
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=83.31 E-value=0.55 Score=39.75 Aligned_cols=18 Identities=33% Similarity=0.324 Sum_probs=15.3
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+.+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 356999999999999765
No 259
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=83.20 E-value=12 Score=35.63 Aligned_cols=98 Identities=9% Similarity=0.119 Sum_probs=65.1
Q ss_pred CchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEE
Q 015093 88 TGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVV 163 (413)
Q Consensus 88 sGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii 163 (413)
..+....+..+...+.....+.++||.|+++.-+..+.+.+.+... .+..+..++|+.......... ....+|+|
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 3343333334444444434456899999999999998888877532 266788889887765544332 35778999
Q ss_pred eChHHHHHHHHcCCCCCCCccEEEEccch
Q 015093 164 GTPGRVFDMLRRQSLRPDYIRMFVLDEAD 192 (413)
Q Consensus 164 ~T~~~l~~~~~~~~~~~~~~~~iIiDE~h 192 (413)
+|. ....+++..++++||.-..-
T Consensus 398 aT~------~~~~GiDip~v~~VI~~~~p 420 (563)
T 3i5x_A 398 CTD------VGARGMDFPNVHEVLQIGVP 420 (563)
T ss_dssp ECG------GGTSSCCCTTCCEEEEESCC
T ss_pred Ecc------hhhcCCCcccCCEEEEECCC
Confidence 994 34467777888888765543
No 260
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=83.18 E-value=0.77 Score=40.07 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=16.3
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.+..+++.||+|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4567999999999999765
No 261
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=83.18 E-value=0.77 Score=37.15 Aligned_cols=19 Identities=42% Similarity=0.403 Sum_probs=16.0
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.|.-+.+.||+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4666889999999999764
No 262
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=83.06 E-value=0.49 Score=37.22 Aligned_cols=20 Identities=25% Similarity=0.152 Sum_probs=16.3
Q ss_pred hCCCcEEEeCCCCCchhHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~ 94 (413)
..|.-+.+.||.|||||..+
T Consensus 7 ~~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHH
Confidence 34666899999999999764
No 263
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=83.05 E-value=0.54 Score=37.07 Aligned_cols=16 Identities=19% Similarity=0.271 Sum_probs=13.9
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
-+++.|++|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3789999999999765
No 264
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=83.04 E-value=0.65 Score=36.38 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=15.3
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
+..+++.|++|||||..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456899999999999765
No 265
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=82.94 E-value=0.86 Score=40.14 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=15.7
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+.+++.||+|+|||..+
T Consensus 45 ~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 367999999999999775
No 266
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=82.89 E-value=0.58 Score=36.60 Aligned_cols=16 Identities=13% Similarity=-0.012 Sum_probs=13.9
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
.+++.|++|||||..+
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999775
No 267
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=82.75 E-value=2 Score=35.45 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=53.2
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC-----CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCc-c-----ccCCCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR-----DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDL-L-----ARGIDVQ 346 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~-----~~G~d~~ 346 (413)
...++||.+|+++.+.++++.+++. +..+..++|+.+..++...+ ...+|+|+|.- + ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 3468999999999999988888763 67788899998876554432 25789999962 2 2345667
Q ss_pred CCCEEEEcC
Q 015093 347 QVSLVINYD 355 (413)
Q Consensus 347 ~~~~vi~~~ 355 (413)
.++.+|+-+
T Consensus 166 ~~~~lViDE 174 (230)
T 2oxc_A 166 SIRLFILDE 174 (230)
T ss_dssp GCCEEEESS
T ss_pred cCCEEEeCC
Confidence 788887644
No 268
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=82.75 E-value=0.87 Score=36.77 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=16.0
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
+|+-+++.||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 4667899999999999764
No 269
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=82.65 E-value=0.71 Score=40.49 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=15.1
Q ss_pred cEEEeCCCCCchhHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~ 96 (413)
.++|.||||||||..+..
T Consensus 7 ~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 488999999999987643
No 270
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=82.50 E-value=0.5 Score=41.79 Aligned_cols=20 Identities=35% Similarity=0.496 Sum_probs=17.0
Q ss_pred hhCCCcEEEeCCCCCchhHH
Q 015093 74 FCKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~ 93 (413)
+..|+.+.+.||||||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34588899999999999964
No 271
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=82.48 E-value=0.64 Score=37.06 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=15.3
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
+..+++.|++|||||..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 455899999999999775
No 272
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=82.23 E-value=0.78 Score=37.73 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=15.9
Q ss_pred CCCcEEEeCCCCCchhHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~ 95 (413)
+.+-+++.||+||||++.+-
T Consensus 28 k~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 44557889999999998763
No 273
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=82.12 E-value=1.2 Score=37.25 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=17.7
Q ss_pred hhCCCcEEEeCCCCCchhHHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~ 95 (413)
+..|.-+.+.||+|+|||....
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHH
Confidence 3456779999999999997653
No 274
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=82.09 E-value=0.79 Score=39.75 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=14.8
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
+.+++.||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56889999999999765
No 275
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=82.07 E-value=7.1 Score=32.55 Aligned_cols=73 Identities=14% Similarity=0.146 Sum_probs=50.7
Q ss_pred CCcEEEEEcCcccHHHHHHHHhh----CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-cc-----ccCCCCCCC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRS----RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LL-----ARGIDVQQV 348 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~-----~~G~d~~~~ 348 (413)
..++||.+|+++.+.++++.+++ .+..+..++|+.+.......+ ....+|+|+|. .+ ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 35899999999999888887765 356777788887654433222 34678999996 22 123567788
Q ss_pred CEEEEcC
Q 015093 349 SLVINYD 355 (413)
Q Consensus 349 ~~vi~~~ 355 (413)
..+|+-+
T Consensus 176 ~~lViDE 182 (253)
T 1wrb_A 176 KYIVLDE 182 (253)
T ss_dssp CEEEEET
T ss_pred CEEEEeC
Confidence 8887644
No 276
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=82.05 E-value=4.4 Score=35.10 Aligned_cols=75 Identities=23% Similarity=0.295 Sum_probs=54.1
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
+.++||.|+++.-+....+.+... +..+..++|+.........+ .+..+|+|+|. +...+++...+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~------va~~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD------VAARGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS------TTTCSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec------hhhcCccccce
Confidence 458999999999888777776553 77888999987765554433 45678999992 33456777788
Q ss_pred cEEEEccch
Q 015093 184 RMFVLDEAD 192 (413)
Q Consensus 184 ~~iIiDE~h 192 (413)
++||.=+.+
T Consensus 98 ~~VI~~d~p 106 (300)
T 3i32_A 98 DLVVHYRMP 106 (300)
T ss_dssp SEEEESSCC
T ss_pred eEEEEcCCC
Confidence 888754443
No 277
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=81.85 E-value=13 Score=34.38 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=21.1
Q ss_pred hhhhhCCCcEEEeCCCCCchhHHHHHHH
Q 015093 71 IVPFCKGLDVIQQAQSGTGKTATFCSGI 98 (413)
Q Consensus 71 ~~~~~~~~~~lv~~~tGsGKT~~~~~~i 98 (413)
+..+.+|+..++.++.|.|||..+...+
T Consensus 145 L~pi~kGq~~~i~G~sGvGKTtL~~~l~ 172 (473)
T 1sky_E 145 LAPYIKGGKIGLFGGAGVGKTVLIQELI 172 (473)
T ss_dssp HSCEETTCEEEEECCSSSCHHHHHHHHH
T ss_pred HhhhccCCEEEEECCCCCCccHHHHHHH
Confidence 3445568889999999999997654333
No 278
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=81.78 E-value=0.76 Score=37.83 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=16.2
Q ss_pred hCCCcEEEeCCCCCchhHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~ 94 (413)
..|+-+.+.||+|+|||...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45777999999999999654
No 279
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=81.75 E-value=3.5 Score=33.83 Aligned_cols=74 Identities=8% Similarity=0.134 Sum_probs=49.2
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhh---CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-c-----cccCCCCCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRS---RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-L-----LARGIDVQQV 348 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~-----~~~G~d~~~~ 348 (413)
.+.++||.+|+++.+.++++.+++ .+..+..++|+.+..++... +. ...+|+|+|. . ....+++..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 456799999999999999888876 36778888888765443332 22 3478999995 1 2235677788
Q ss_pred CEEEEcC
Q 015093 349 SLVINYD 355 (413)
Q Consensus 349 ~~vi~~~ 355 (413)
+.+|+-+
T Consensus 169 ~~lViDE 175 (228)
T 3iuy_A 169 TYLVIDE 175 (228)
T ss_dssp CEEEECC
T ss_pred eEEEEEC
Confidence 8888644
No 280
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=81.49 E-value=2.3 Score=48.32 Aligned_cols=47 Identities=23% Similarity=0.097 Sum_probs=31.1
Q ss_pred CHHHHHHHHhCCCCCCcHHHH-h---hhhhhhCCCcEEEeCCCCCchhHHHH
Q 015093 48 KENLLRGIYAYGFEKPSAIQQ-R---GIVPFCKGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~Q~-~---~~~~~~~~~~~lv~~~tGsGKT~~~~ 95 (413)
.+.+.+.+.+.++. +.+.+. + .++.+..+..++++||||||||.++-
T Consensus 891 ~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 891 VQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 34556666667764 445442 2 23344456779999999999998763
No 281
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=81.41 E-value=0.84 Score=40.32 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=15.0
Q ss_pred cEEEeCCCCCchhHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~ 96 (413)
-++|.||||||||..+..
T Consensus 9 lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHH
Confidence 478999999999987643
No 282
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=81.27 E-value=0.73 Score=36.60 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.3
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
|..+++.|++|||||..+
T Consensus 4 g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 455899999999999876
No 283
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=81.20 E-value=2.1 Score=36.63 Aligned_cols=27 Identities=15% Similarity=0.043 Sum_probs=20.8
Q ss_pred hhhCCCcEEEeCCCCCchhHHHHHHHH
Q 015093 73 PFCKGLDVIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 73 ~~~~~~~~lv~~~tGsGKT~~~~~~i~ 99 (413)
-+..|.-++|.+|+|+|||..+...+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 355678899999999999977654443
No 284
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=81.17 E-value=0.83 Score=40.75 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=19.0
Q ss_pred hhhhhhCCCc--EEEeCCCCCchhHHH
Q 015093 70 GIVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 70 ~~~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
.++.++.|.+ ++..|.||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 3445566766 788999999999875
No 285
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=81.13 E-value=16 Score=34.99 Aligned_cols=89 Identities=10% Similarity=0.143 Sum_probs=61.4
Q ss_pred HHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHH
Q 015093 97 GILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDM 172 (413)
Q Consensus 97 ~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~ 172 (413)
.+...+.....+.++||.|+++.-+...++.+++... .+..+..++|+.......... ....+|+|+|.
T Consensus 277 ~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~------ 349 (579)
T 3sqw_A 277 HIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------ 349 (579)
T ss_dssp HHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------
T ss_pred HHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc------
Confidence 3333343334456899999999999998888877532 266788889887765543332 35778999993
Q ss_pred HHcCCCCCCCccEEEEccch
Q 015093 173 LRRQSLRPDYIRMFVLDEAD 192 (413)
Q Consensus 173 ~~~~~~~~~~~~~iIiDE~h 192 (413)
....+++..++++||.-..-
T Consensus 350 ~~~~GiDip~v~~VI~~~~p 369 (579)
T 3sqw_A 350 VGARGMDFPNVHEVLQIGVP 369 (579)
T ss_dssp GGTSSCCCTTCCEEEEESCC
T ss_pred hhhcCCCcccCCEEEEcCCC
Confidence 33457777888888866544
No 286
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=81.06 E-value=0.7 Score=36.32 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.2
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
+..+++.|+.|||||..+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456899999999999765
No 287
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=80.95 E-value=0.8 Score=41.07 Aligned_cols=19 Identities=47% Similarity=0.559 Sum_probs=16.1
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
++.+++.||+|+|||..+-
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4579999999999998763
No 288
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=80.93 E-value=0.82 Score=36.95 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=15.8
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.+..+++.||.|||||..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3566899999999999765
No 289
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=80.85 E-value=4.1 Score=36.52 Aligned_cols=74 Identities=8% Similarity=0.210 Sum_probs=54.9
Q ss_pred CCcEEEEEcCcccHHHHHHHHhhC-----CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-cc-----ccCCCCCC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRSR-----DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LL-----ARGIDVQQ 347 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~-----~~G~d~~~ 347 (413)
..++||.+|++..+.++++.+.+. +..+..++|+.+..+... .+..+..+|+|+|. .+ ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999888877663 688999999988765543 34456678999995 22 23456778
Q ss_pred CCEEEEcC
Q 015093 348 VSLVINYD 355 (413)
Q Consensus 348 ~~~vi~~~ 355 (413)
++.+|+-+
T Consensus 153 ~~~vViDE 160 (391)
T 1xti_A 153 IKHFILDE 160 (391)
T ss_dssp CSEEEECS
T ss_pred cCEEEEeC
Confidence 88887644
No 290
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=80.85 E-value=0.86 Score=36.33 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=14.0
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
+-+.+.||.|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34789999999999754
No 291
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=80.67 E-value=1 Score=39.58 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=18.3
Q ss_pred hhhhhCCCc--EEEeCCCCCchhHHH
Q 015093 71 IVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 71 ~~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
++.++.|.+ ++..|.||||||.+.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 344456766 778999999999875
No 292
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=80.66 E-value=0.81 Score=36.96 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=16.0
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
++..+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556899999999999776
No 293
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=80.45 E-value=1.1 Score=41.77 Aligned_cols=19 Identities=42% Similarity=0.490 Sum_probs=16.3
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
++++++.||+|+|||..+-
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 4679999999999998763
No 294
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=80.08 E-value=0.67 Score=37.03 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=15.1
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
+..+++.|++|||||..+
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345889999999999875
No 295
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=80.00 E-value=3.2 Score=47.78 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=39.6
Q ss_pred CHHHHHHHHhCCCCCCcHHHH-hhh---hhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc-cCceeEEEEccc
Q 015093 48 KENLLRGIYAYGFEKPSAIQQ-RGI---VPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-SLQCQALVLAPT 117 (413)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~Q~-~~~---~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-~~~~~~lvl~P~ 117 (413)
.+.+.+.+.+.+.. +.+.|. +++ +.+.-+..++++||||+|||.++-... ..+..- +......++-|-
T Consensus 874 ~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~-~al~~l~~~~~~~~~iNPK 946 (3245)
T 3vkg_A 874 RKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYL-EAIEQVDNIKSEAHVMDPK 946 (3245)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHH-HHHTTTTTCEEEEEEECTT
T ss_pred HHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHH-HHHHHhhCCCceEEEECCC
Confidence 35566777778874 555443 333 334446669999999999998863322 222211 112345566664
No 296
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=79.72 E-value=0.97 Score=40.02 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=17.5
Q ss_pred hhhhCCCc--EEEeCCCCCchhHHH
Q 015093 72 VPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 72 ~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
+.++.|.+ ++..|.||||||.+.
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 34455665 778999999999874
No 297
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=79.64 E-value=1.2 Score=39.45 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=19.9
Q ss_pred hhhhhhCCCc--EEEeCCCCCchhHHH
Q 015093 70 GIVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 70 ~~~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
.++.++.|.+ ++..|.||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4556677766 777999999999875
No 298
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=79.56 E-value=1.3 Score=39.36 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=20.3
Q ss_pred hhhhhhCCCc--EEEeCCCCCchhHHH
Q 015093 70 GIVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 70 ~~~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
.+..++.|.+ ++..|.||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5666777876 677999999999876
No 299
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=79.48 E-value=1.2 Score=39.71 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=17.8
Q ss_pred hhhhCCCc--EEEeCCCCCchhHHH
Q 015093 72 VPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 72 ~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
+.++.|.+ ++..|.||||||.+.
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCcceEEEECCCCCCcceEe
Confidence 34556766 778999999999775
No 300
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=79.34 E-value=0.99 Score=37.17 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=16.2
Q ss_pred hhCCCcEEEeCCCCCchhHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~ 94 (413)
+..|+-+.+.||.|+|||...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 445777999999999999654
No 301
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=79.31 E-value=1.1 Score=48.52 Aligned_cols=50 Identities=20% Similarity=0.114 Sum_probs=35.2
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~ 132 (413)
|+-+.|.+|.|||||..++..+.+.-.. +..++++.+-.++.... +++++
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~---g~~~~~i~~e~~~~~~~---~~~~G 1480 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY---ARKLG 1480 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTTSCCCHHH---HHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEecCCCCCHHH---HHHcC
Confidence 3569999999999999887766554322 44788888876665543 45553
No 302
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=79.29 E-value=1 Score=36.67 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=16.6
Q ss_pred hhhCCCcEEEeCCCCCchhHHH
Q 015093 73 PFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 73 ~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
.+..|+-+.+.||.|+|||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4556788999999999999654
No 303
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=79.24 E-value=1.2 Score=39.51 Aligned_cols=24 Identities=38% Similarity=0.679 Sum_probs=18.1
Q ss_pred hhhhhCCCc--EEEeCCCCCchhHHH
Q 015093 71 IVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 71 ~~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
++.++.|.+ ++..|.||||||.+.
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 344456766 778999999999875
No 304
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=79.24 E-value=0.95 Score=40.95 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=14.3
Q ss_pred EEEeCCCCCchhHHHHH
Q 015093 80 VIQQAQSGTGKTATFCS 96 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~ 96 (413)
++|.||||+|||..+..
T Consensus 5 i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEECSSSSHHHHHHH
T ss_pred EEEECcchhhHHHHHHH
Confidence 68899999999977643
No 305
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=79.19 E-value=1.2 Score=39.66 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=17.7
Q ss_pred hhhhCCCc--EEEeCCCCCchhHHH
Q 015093 72 VPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 72 ~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
+.++.|.+ ++..|.||||||.+.
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCceeee
Confidence 34456766 778999999999875
No 306
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=79.16 E-value=1.2 Score=39.53 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=17.6
Q ss_pred hhhhCCCc--EEEeCCCCCchhHHH
Q 015093 72 VPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 72 ~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
+.++.|.+ ++..|.||||||.+.
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEEe
Confidence 33456765 778999999999875
No 307
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=79.04 E-value=1.2 Score=39.12 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=19.3
Q ss_pred hhhhhhCCCc--EEEeCCCCCchhHHH
Q 015093 70 GIVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 70 ~~~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
.+..++.|.+ ++..|.||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4455567766 777999999999775
No 308
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=79.01 E-value=1.2 Score=36.29 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=13.7
Q ss_pred EEEeCCCCCchhHHHH
Q 015093 80 VIQQAQSGTGKTATFC 95 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~ 95 (413)
+++.||+||||++.+-
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999998763
No 309
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=79.01 E-value=0.96 Score=38.12 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.5
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
+.+++.||+|+|||..+
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 44999999999999764
No 310
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=78.95 E-value=1.2 Score=39.74 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=17.8
Q ss_pred hhhhCCCc--EEEeCCCCCchhHHH
Q 015093 72 VPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 72 ~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
+.++.|.+ ++..|.||||||.+.
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceEEEeecCCCCCCceEE
Confidence 34456766 778999999999875
No 311
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=78.81 E-value=1.2 Score=39.97 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=17.1
Q ss_pred hhhCCCc--EEEeCCCCCchhHHH
Q 015093 73 PFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 73 ~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
.++.|.+ ++..|.||||||.+.
T Consensus 93 ~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 93 HLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HhhcCceeeEeeecCCCCCCCeEe
Confidence 3455665 777999999999775
No 312
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=78.73 E-value=1.3 Score=39.96 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=15.7
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
..++++.||+|+|||..+
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456999999999999776
No 313
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=78.72 E-value=0.89 Score=36.33 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=14.6
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
..+++.|++|||||..+
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999876
No 314
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=78.69 E-value=0.7 Score=39.34 Aligned_cols=19 Identities=32% Similarity=0.247 Sum_probs=15.8
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
.+.+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4568999999999997753
No 315
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=78.64 E-value=0.95 Score=36.58 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.8
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
..+++.|++|||||..+
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999765
No 316
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=78.63 E-value=1.2 Score=35.55 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=16.1
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
++..+++.|++|||||..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566899999999999876
No 317
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=78.47 E-value=15 Score=30.91 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=52.5
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhh----CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-----cc--ccCCCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRS----RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-----LL--ARGIDVQ 346 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-----~~--~~G~d~~ 346 (413)
.+.++||.+|+++.+.++++.+++ .+..+..+.|+......... +..+ .+|+|+|+ .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 356799999999999998888876 35677788888776554433 2333 78999994 11 1246778
Q ss_pred CCCEEEEcC
Q 015093 347 QVSLVINYD 355 (413)
Q Consensus 347 ~~~~vi~~~ 355 (413)
.+..+|+-+
T Consensus 201 ~l~~lViDE 209 (262)
T 3ly5_A 201 NLQCLVIDE 209 (262)
T ss_dssp TCCEEEECS
T ss_pred cCCEEEEcC
Confidence 888887644
No 318
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=78.40 E-value=1.8 Score=37.45 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=25.1
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
+..|.-++|.||+|+|||..+...+.. +... .+.+++++..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~-~~~~-~G~~v~~~~~ 72 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQ-WGTA-MGKKVGLAML 72 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHH-HHHT-SCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHH-HHHH-cCCeEEEEeC
Confidence 445677999999999999765433322 2222 1325666643
No 319
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=78.38 E-value=1.1 Score=40.01 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=17.8
Q ss_pred hhhhCCCc--EEEeCCCCCchhHHH
Q 015093 72 VPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 72 ~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
+.++.|.+ ++..|.||||||.+.
T Consensus 95 ~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 95 DSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHhCCCeeeEEeecCCCCCCCEeE
Confidence 34556766 777999999999875
No 320
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=78.36 E-value=1.2 Score=40.35 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=19.9
Q ss_pred hhhhhhCCCc--EEEeCCCCCchhHHH
Q 015093 70 GIVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 70 ~~~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
.+..++.|.+ ++..|.||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 4566677876 677999999999876
No 321
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=78.33 E-value=1.1 Score=35.42 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=24.4
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
++|.|++|||||.-+...+ .. +.+++++......-.++.+++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la-----~~--~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI-----GD--APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH-----CS--CSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHHHHH-----hc--CCCeEEEecCCCCCHHHHHHHHH
Confidence 6899999999997653222 12 23677877755444444444444
No 322
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=78.32 E-value=1.3 Score=39.64 Aligned_cols=19 Identities=26% Similarity=0.184 Sum_probs=16.1
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
.+.+++.||+|+|||..+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997763
No 323
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=78.30 E-value=1.3 Score=39.60 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=18.3
Q ss_pred hhhhhCCCc--EEEeCCCCCchhHHH
Q 015093 71 IVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 71 ~~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
++.++.|.+ ++..|.||||||.+.
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 344556766 777999999999775
No 324
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=78.28 E-value=1.9 Score=37.45 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=14.8
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
..+++.||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 35999999999999776
No 325
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=78.25 E-value=0.96 Score=36.73 Aligned_cols=24 Identities=17% Similarity=0.061 Sum_probs=18.1
Q ss_pred hhhhhCCCcEEEeCCCCCchhHHH
Q 015093 71 IVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 71 ~~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
++.+..+.-+.|.|++|||||..+
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHH
Confidence 344445566889999999999765
No 326
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=78.12 E-value=1.2 Score=39.72 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=19.0
Q ss_pred hhhhhhCCCc--EEEeCCCCCchhHHH
Q 015093 70 GIVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 70 ~~~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
.++.++.|.+ ++..|.||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3445566766 677999999999875
No 327
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=78.07 E-value=36 Score=30.09 Aligned_cols=76 Identities=14% Similarity=0.229 Sum_probs=56.2
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
..+++|.|+++.-+....+.++.. +..+..++|+.......... .+..+|+|+|. ....+++..++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~ 312 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPTV 312 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCcccC
Confidence 458999999999998888887764 66788888887655544333 34678999993 34567788888
Q ss_pred cEEEEccchh
Q 015093 184 RMFVLDEADE 193 (413)
Q Consensus 184 ~~iIiDE~h~ 193 (413)
++||.-+...
T Consensus 313 ~~Vi~~~~p~ 322 (395)
T 3pey_A 313 SMVVNYDLPT 322 (395)
T ss_dssp EEEEESSCCB
T ss_pred CEEEEcCCCC
Confidence 9988766553
No 328
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=78.06 E-value=1.2 Score=40.38 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=18.2
Q ss_pred hhhhhCCCc--EEEeCCCCCchhHHH
Q 015093 71 IVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 71 ~~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
++.++.|.+ ++..|.||||||.+.
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 344556766 777999999999875
No 329
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=78.02 E-value=1 Score=36.86 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=13.5
Q ss_pred EEEeCCCCCchhHHH
Q 015093 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~ 94 (413)
+++.|++|||||..+
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999876
No 330
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=78.01 E-value=1.5 Score=41.35 Aligned_cols=52 Identities=12% Similarity=-0.024 Sum_probs=32.7
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVM 128 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~ 128 (413)
+..|.-++|.|++|+|||..++..+.+.... .+.+++++.-- .-..|...++
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~--~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTA--MGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTT--SCCCEEEEESS-SCHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHh--cCCcEEEEecc-CCHHHHHHHH
Confidence 3345669999999999998776655554432 13367777643 2244555444
No 331
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=77.98 E-value=1.2 Score=39.54 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=18.3
Q ss_pred hhhhhCCCc--EEEeCCCCCchhHHH
Q 015093 71 IVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 71 ~~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
++.++.|.+ ++..|.||||||.+.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 344556766 777999999999875
No 332
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=77.80 E-value=0.99 Score=38.99 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=14.5
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
.-+++.||+|||||..+
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34899999999999765
No 333
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=77.70 E-value=1.4 Score=39.71 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=18.3
Q ss_pred hhhhhCCCc--EEEeCCCCCchhHHH
Q 015093 71 IVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 71 ~~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
++.++.|.+ ++..|.||||||.+.
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 344556766 777999999999875
No 334
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=77.66 E-value=1.2 Score=39.59 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=18.8
Q ss_pred hhhhhhCCCc--EEEeCCCCCchhHHH
Q 015093 70 GIVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 70 ~~~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
.++.++.|.+ ++..|.||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 3445566766 677999999999775
No 335
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=77.64 E-value=2 Score=37.36 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=15.0
Q ss_pred CcEEEeCCCCCchhHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~ 96 (413)
+-+.+.+++|+|||.....
T Consensus 105 ~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHH
Confidence 3478899999999976543
No 336
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=77.64 E-value=1.2 Score=35.51 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=14.1
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
+-++|+||.|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34799999999999754
No 337
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=77.58 E-value=1.5 Score=34.15 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=15.4
Q ss_pred CcEEEeCCCCCchhHHHH
Q 015093 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~ 95 (413)
+++++.|++|||||.++-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999998763
No 338
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=77.51 E-value=0.79 Score=40.74 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=15.5
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
..++++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 456999999999999765
No 339
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=77.39 E-value=2 Score=38.31 Aligned_cols=39 Identities=15% Similarity=-0.002 Sum_probs=23.3
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhccc-cc--CceeEEEEcc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDY-ES--LQCQALVLAP 116 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~-~~--~~~~~lvl~P 116 (413)
.-+.|.+|+|+|||......+...... .. .+.+++++.-
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 348899999999997765444332111 11 1246677654
No 340
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=77.27 E-value=1.2 Score=39.66 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=18.9
Q ss_pred hhhhhhCCCc--EEEeCCCCCchhHHH
Q 015093 70 GIVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 70 ~~~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
.++.++.|.+ ++..|.||||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 3444556766 777999999999775
No 341
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=77.18 E-value=1.4 Score=35.50 Aligned_cols=19 Identities=32% Similarity=0.399 Sum_probs=15.8
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.+.-+.+.||.|||||..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4566889999999999765
No 342
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=77.18 E-value=2.3 Score=34.86 Aligned_cols=73 Identities=15% Similarity=0.181 Sum_probs=45.9
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhh----CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-cc-----ccCCCCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRS----RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LL-----ARGIDVQQ 347 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~-----~~G~d~~~ 347 (413)
...++||.+|++..+.++++.+.+ .+..+..++|+.+..++... +. +.+|+|+|. .+ ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 345899999999999888887765 36778888888765443322 22 378999995 21 23566777
Q ss_pred CCEEEEcC
Q 015093 348 VSLVINYD 355 (413)
Q Consensus 348 ~~~vi~~~ 355 (413)
+..+|+-+
T Consensus 156 ~~~iViDE 163 (224)
T 1qde_A 156 IKMFILDE 163 (224)
T ss_dssp CCEEEEET
T ss_pred CcEEEEcC
Confidence 88887644
No 343
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=77.14 E-value=1.1 Score=36.62 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=13.5
Q ss_pred EEEeCCCCCchhHHH
Q 015093 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~ 94 (413)
+++.|++|||||..+
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999876
No 344
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=77.11 E-value=0.97 Score=36.03 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=13.5
Q ss_pred EEEeCCCCCchhHHH
Q 015093 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~ 94 (413)
+++.|++|||||..+
T Consensus 4 I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 4 GIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999775
No 345
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=77.03 E-value=1.1 Score=35.63 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=13.7
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
-+++.||+|+|||..+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4688999999999765
No 346
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=77.03 E-value=1.4 Score=40.15 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=19.5
Q ss_pred hhhhhhCCCc--EEEeCCCCCchhHHH
Q 015093 70 GIVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 70 ~~~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
.+..++.|.+ ++..|.||||||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4555667766 777999999999875
No 347
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=76.98 E-value=1.3 Score=38.75 Aligned_cols=24 Identities=21% Similarity=0.034 Sum_probs=18.5
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~ 99 (413)
.++.+++.+|+|+|||..++..+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 455579999999999987755444
No 348
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=76.96 E-value=1.1 Score=36.43 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=15.2
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.|.-+.|.||+|||||..+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3455889999999999654
No 349
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=76.90 E-value=1.2 Score=34.86 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=14.2
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
.+++.|++|||||..+
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4889999999999876
No 350
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=76.89 E-value=1.6 Score=35.72 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=15.2
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
+..+++.|++|||||..+
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 345899999999999876
No 351
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=76.85 E-value=1.8 Score=36.40 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=17.0
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.+..+++.|++|+|||..+
T Consensus 47 ~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TTCCEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4888999999999999775
No 352
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=76.82 E-value=1.5 Score=36.11 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=15.7
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
...+++.|++|||||..+-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3458999999999998763
No 353
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=76.62 E-value=1.3 Score=34.97 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=14.2
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
.+++.|++|||||..+
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIG 19 (184)
T ss_dssp SEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4889999999999876
No 354
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=76.62 E-value=1.3 Score=35.63 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=14.6
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
..+++.|++|||||..+
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34889999999999876
No 355
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=76.57 E-value=1.4 Score=35.85 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=16.9
Q ss_pred hhCCCcEEEeCCCCCchhHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~ 94 (413)
+..+..+++.|++|||||..+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHH
Confidence 345666889999999999765
No 356
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=76.44 E-value=1.7 Score=34.09 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=14.2
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
.+++.+++|||||..+
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5889999999999876
No 357
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=76.43 E-value=1.2 Score=36.21 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=15.3
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
+.-+++.|++|||||..+
T Consensus 4 ~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 455889999999999876
No 358
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=76.43 E-value=1.2 Score=39.78 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=19.1
Q ss_pred hhhhhhCCCc--EEEeCCCCCchhHHH
Q 015093 70 GIVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 70 ~~~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
.+..++.|.+ ++..|.||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4455567766 677999999999875
No 359
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=76.35 E-value=2.6 Score=37.94 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=18.5
Q ss_pred hhhCCCcEEEeCCCCCchhHHH
Q 015093 73 PFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 73 ~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
.+.+|+.+.|.+|+|+|||...
T Consensus 170 pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 170 PIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp CCBTTCEEEEECCSSSSHHHHH
T ss_pred eecCCcEEEEecCCCCChhHHH
Confidence 3456888999999999999765
No 360
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=76.35 E-value=1.8 Score=37.68 Aligned_cols=21 Identities=19% Similarity=0.040 Sum_probs=17.2
Q ss_pred hhCCCcEEEeCCCCCchhHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~ 94 (413)
+..|+.+.|.||+|+|||...
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHH
Confidence 345778999999999999654
No 361
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=76.33 E-value=1.4 Score=39.57 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=17.5
Q ss_pred hhhhCCCc--EEEeCCCCCchhHHH
Q 015093 72 VPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 72 ~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
+.++.|.+ ++..|.||||||.+.
T Consensus 94 ~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 94 EEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCceEEEEeecCCCCCcceec
Confidence 33455665 778999999999775
No 362
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=76.32 E-value=1.6 Score=39.21 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=19.0
Q ss_pred hhhhhhCCCc--EEEeCCCCCchhHHH
Q 015093 70 GIVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 70 ~~~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
.+..++.|.+ ++..|.||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 3455566766 777999999999775
No 363
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=76.30 E-value=2 Score=37.39 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=14.8
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
|.-+.+.||+|+|||...
T Consensus 100 g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 445889999999999764
No 364
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=76.15 E-value=1 Score=36.10 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=15.5
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
+..+++.|++|||||..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp SCEEEEEECTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456899999999999775
No 365
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=75.95 E-value=1.1 Score=35.36 Aligned_cols=18 Identities=28% Similarity=0.191 Sum_probs=11.2
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
+..+++.|++|||||..+
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345889999999999876
No 366
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=75.91 E-value=2.4 Score=37.14 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=15.0
Q ss_pred CcEEEeCCCCCchhHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~ 96 (413)
+-+.+.++.|+|||.....
T Consensus 106 ~vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp EEEEEESSTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3478899999999977643
No 367
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=75.89 E-value=1.5 Score=36.18 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=15.3
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
...+++.|++|||||..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 355899999999999875
No 368
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=75.85 E-value=2.7 Score=41.90 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=31.6
Q ss_pred ccCccCCCCCHHHHHHHHhCC-CCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHH
Q 015093 39 YDSFDSMGLKENLLRGIYAYG-FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~-~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
...|+..+.-++..+.+...- ++..+|.+-.-+ -+...+.+|+.||+|+|||+.+
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHH
Confidence 356777776677777776532 111111111111 1122466999999999999765
No 369
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=75.74 E-value=1.7 Score=39.98 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=17.7
Q ss_pred hhhhCCCc--EEEeCCCCCchhHHH
Q 015093 72 VPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 72 ~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
+.++.|.+ ++..|.||||||.+.
T Consensus 130 ~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 130 DHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHhhcCCceEEEEeCCCCCCCCEEe
Confidence 34456766 778999999999875
No 370
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=75.73 E-value=1.3 Score=34.96 Aligned_cols=18 Identities=39% Similarity=0.436 Sum_probs=15.1
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
|..+++.|+.|||||..+
T Consensus 5 g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 455889999999999765
No 371
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=75.58 E-value=2.5 Score=36.72 Aligned_cols=70 Identities=10% Similarity=0.044 Sum_probs=47.9
Q ss_pred CcEEEEEcCcccHHHHHHHHhhC-----CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCc-c-----c-cCCCCCC
Q 015093 280 TQSVIFVNTRRKVDWLTDQMRSR-----DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDL-L-----A-RGIDVQQ 347 (413)
Q Consensus 280 ~~~lIf~~~~~~a~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~-----~-~G~d~~~ 347 (413)
.++||.+|+++.|.++++.+... +..+....++...... .....+|+|+|+- + . ..+++..
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 47999999999999988777653 4566666666542111 1345679999962 2 2 3577888
Q ss_pred CCEEEEcCC
Q 015093 348 VSLVINYDL 356 (413)
Q Consensus 348 ~~~vi~~~~ 356 (413)
+.++|+-..
T Consensus 236 l~~lVlDEa 244 (300)
T 3fmo_B 236 IKVFVLDEA 244 (300)
T ss_dssp CSEEEETTH
T ss_pred ceEEEEeCH
Confidence 998887543
No 372
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=75.56 E-value=1.8 Score=36.30 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=15.4
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
+..+++.||+|||||..+
T Consensus 29 ~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 445899999999999876
No 373
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=75.50 E-value=15 Score=33.04 Aligned_cols=73 Identities=18% Similarity=0.294 Sum_probs=53.7
Q ss_pred eeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCcc
Q 015093 109 CQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYIR 184 (413)
Q Consensus 109 ~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~~ 184 (413)
.+++|.|+++.-+....+.+... +..+..++|+.......... .+...|+|+|. ....+++..+++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi~~v~ 346 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD------VWARGLDVPQVS 346 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG------GGSSSCCCTTEE
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhCcCCcccCC
Confidence 48999999999988888877764 66788889887755544332 34678999994 345677788888
Q ss_pred EEEEccc
Q 015093 185 MFVLDEA 191 (413)
Q Consensus 185 ~iIiDE~ 191 (413)
+||.-+.
T Consensus 347 ~Vi~~~~ 353 (410)
T 2j0s_A 347 LIINYDL 353 (410)
T ss_dssp EEEESSC
T ss_pred EEEEECC
Confidence 8886443
No 374
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=75.50 E-value=1.2 Score=37.01 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=12.8
Q ss_pred hhCCCcEEEeCCCCCchhHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~ 94 (413)
+..|.-+.+.||+|+|||...
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EECCCEEEEECSCC----CHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 345667899999999999664
No 375
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=75.34 E-value=1.4 Score=34.26 Aligned_cols=16 Identities=13% Similarity=0.030 Sum_probs=13.8
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
.+++.|++|||||..+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3789999999999775
No 376
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=75.34 E-value=12 Score=34.33 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=53.4
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC-CC---eeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-ccc-----cCCCCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR-DH---TVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LLA-----RGIDVQQ 347 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~-~~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~-----~G~d~~~ 347 (413)
..+++||.+|++..+...++.+.+. +. .+..++|+....++..... ..+|+|+|. .+. ..+....
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 5679999999999988888888764 44 7889999988776654433 467999985 222 2456667
Q ss_pred CCEEEEcC
Q 015093 348 VSLVINYD 355 (413)
Q Consensus 348 ~~~vi~~~ 355 (413)
++.||+-+
T Consensus 126 ~~~vIiDE 133 (494)
T 1wp9_A 126 VSLIVFDE 133 (494)
T ss_dssp CSEEEEET
T ss_pred ceEEEEEC
Confidence 78887644
No 377
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=75.31 E-value=2.7 Score=36.57 Aligned_cols=18 Identities=39% Similarity=0.512 Sum_probs=14.7
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
+.-+.+.||+|+|||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 445888999999999754
No 378
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=75.09 E-value=1.4 Score=33.64 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=13.6
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
-.+|.+|+|+|||...
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3789999999999764
No 379
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=75.01 E-value=1.3 Score=36.37 Aligned_cols=22 Identities=18% Similarity=0.010 Sum_probs=17.3
Q ss_pred hCCCcEEEeCCCCCchhHHHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~ 96 (413)
..|.-+.+.+|+|+|||.....
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 3466699999999999976543
No 380
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=74.94 E-value=1.4 Score=35.58 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=14.0
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
.+++.|++|||||..+
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999775
No 381
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=74.90 E-value=2.4 Score=46.59 Aligned_cols=41 Identities=15% Similarity=0.004 Sum_probs=29.9
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
.++.+++.+|+|+|||..+...+.+.... +.+++++.....
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~---G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHA 1466 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEEcccc
Confidence 36789999999999998887666554332 447888876543
No 382
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=74.77 E-value=1.8 Score=38.24 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=14.9
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 56999999999999765
No 383
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=74.71 E-value=2.7 Score=38.62 Aligned_cols=35 Identities=17% Similarity=0.099 Sum_probs=22.5
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA 115 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~ 115 (413)
..+++.+++|+|||..+...+... .. . +.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l-~~-~-G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYI-QK-R-GLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHH-HH-H-HCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-HH-c-CCeEEEEe
Confidence 358899999999998765444332 22 2 33666665
No 384
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=74.50 E-value=1.8 Score=34.26 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=15.6
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
+..+++.|++|||||..+-
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4558899999999997653
No 385
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=74.44 E-value=4.1 Score=34.43 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=31.9
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~ 132 (413)
|..+++.+.+|+|||..++..+.+.+.. +.++++++-. +-..+..+.++.++
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~---Ge~~~~~~~~-e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKS---DNLVGMFSIS-YPLQLIIRILSRFG 72 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHT---TCEEEEEECS-SCHHHHHHHHHHTT
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHC---CCcEEEEEEe-CCHHHHHHHHHHcC
Confidence 4558888788888885554444444433 3367777654 34555666676653
No 386
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=74.44 E-value=2.1 Score=35.53 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=15.7
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
+..+++.|++|||||..+-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3468999999999998763
No 387
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=74.37 E-value=13 Score=33.23 Aligned_cols=73 Identities=12% Similarity=0.196 Sum_probs=52.9
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
..+++|.|+++.-+....+.++.. +..+..++|+.......... .....|+|+|. ....+++...+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~------~~~~Gidip~~ 327 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD------LLTRGIDIQAV 327 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS------CSSSSCCCTTE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC------ccccCCCccCC
Confidence 348999999999998888888775 67788888887655443332 34678999993 33456777778
Q ss_pred cEEEEcc
Q 015093 184 RMFVLDE 190 (413)
Q Consensus 184 ~~iIiDE 190 (413)
++||.-+
T Consensus 328 ~~Vi~~~ 334 (400)
T 1s2m_A 328 NVVINFD 334 (400)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 8877544
No 388
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=74.31 E-value=4.7 Score=41.81 Aligned_cols=76 Identities=16% Similarity=0.276 Sum_probs=57.2
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhh----CCC----eeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-ccccCCC-CCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRS----RDH----TVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LLARGID-VQQ 347 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~----~~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d-~~~ 347 (413)
.+.++||.+|++..+.++++.+++ .+. .+..++|+.+..++.+..+.+.+ .+|+|+|+ .+..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 456899999999999888888864 355 78899999998888777777776 88999996 2222222 557
Q ss_pred CCEEEEcC
Q 015093 348 VSLVINYD 355 (413)
Q Consensus 348 ~~~vi~~~ 355 (413)
++.+|+-+
T Consensus 176 l~~lViDE 183 (1054)
T 1gku_B 176 FDFIFVDD 183 (1054)
T ss_dssp CSEEEESC
T ss_pred CCEEEEeC
Confidence 77877644
No 389
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=74.31 E-value=1.4 Score=35.74 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=16.4
Q ss_pred CCCcEEEeCCCCCchhHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~ 95 (413)
.+..+++.|+.|||||..+-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 45568999999999998763
No 390
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=74.31 E-value=33 Score=33.38 Aligned_cols=77 Identities=21% Similarity=0.303 Sum_probs=57.8
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHH----HhcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRI----LSAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
+.+++|.|+++..+....+.+... ++.+..++++......... ..+..+|+|+|. ....+++...+
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~------~l~~GlDip~v 514 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLDIPEV 514 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC------CCSTTCCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc------hhhCCcccCCC
Confidence 458999999999998888877775 6778888887765544333 235678999983 33567778889
Q ss_pred cEEEEccchhh
Q 015093 184 RMFVLDEADEM 194 (413)
Q Consensus 184 ~~iIiDE~h~~ 194 (413)
++||+-|++.+
T Consensus 515 ~lVi~~d~d~~ 525 (661)
T 2d7d_A 515 SLVAILDADKE 525 (661)
T ss_dssp EEEEETTTTCC
T ss_pred CEEEEeCcccc
Confidence 99999998754
No 391
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=74.29 E-value=1.6 Score=41.99 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=14.5
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 7999999999999764
No 392
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=74.13 E-value=16 Score=34.21 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=22.3
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
.+++++++|+|||..+...+.. +.. . +.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~-l~~-~-G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYY-YQR-K-GWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH-HHH-T-TCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHh-C-CCeEEEEec
Confidence 4788999999999876444432 222 2 336666654
No 393
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=73.98 E-value=4.8 Score=33.21 Aligned_cols=73 Identities=14% Similarity=0.148 Sum_probs=50.3
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC----CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-cc----cc--CCCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR----DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LL----AR--GIDVQ 346 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~----~~--G~d~~ 346 (413)
.+.++||.+|+++.+.++++.+++. +..+..++|+.+.......+ +..+|+|+|. .+ .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 4568999999999999888888764 46788888887654433322 3678999995 22 22 36677
Q ss_pred CCCEEEEcC
Q 015093 347 QVSLVINYD 355 (413)
Q Consensus 347 ~~~~vi~~~ 355 (413)
.++.+|+-+
T Consensus 171 ~~~~lViDE 179 (236)
T 2pl3_A 171 DLQMLVLDE 179 (236)
T ss_dssp TCCEEEETT
T ss_pred cccEEEEeC
Confidence 888887644
No 394
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=73.93 E-value=1.7 Score=34.53 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=14.1
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
.+++.|++|||||..+
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999875
No 395
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=73.89 E-value=1.5 Score=34.88 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=13.3
Q ss_pred EEEeCCCCCchhHHH
Q 015093 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~ 94 (413)
+++.|++|||||..+
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999775
No 396
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=73.77 E-value=1.5 Score=37.19 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=14.5
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
.-+++.|++|||||..+
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 34889999999999775
No 397
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=73.76 E-value=2 Score=34.55 Aligned_cols=15 Identities=20% Similarity=0.291 Sum_probs=13.4
Q ss_pred EEEeCCCCCchhHHH
Q 015093 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~ 94 (413)
+++.|++|||||..+
T Consensus 3 I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 3 IAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 689999999999765
No 398
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=73.59 E-value=1.6 Score=35.37 Aligned_cols=15 Identities=33% Similarity=0.293 Sum_probs=13.3
Q ss_pred EEEeCCCCCchhHHH
Q 015093 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~ 94 (413)
+.+.|+.|||||..+
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999765
No 399
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=73.52 E-value=1.6 Score=34.93 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=13.4
Q ss_pred EEEeCCCCCchhHHH
Q 015093 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~ 94 (413)
+++.|+.|||||..+
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999776
No 400
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=73.52 E-value=1.5 Score=35.57 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=15.9
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
++.-+++.|+.|||||..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556899999999999876
No 401
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=73.52 E-value=1.5 Score=36.00 Aligned_cols=17 Identities=24% Similarity=0.261 Sum_probs=14.5
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
..+.+.||+|||||..+
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999765
No 402
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=73.41 E-value=1.7 Score=36.26 Aligned_cols=19 Identities=32% Similarity=0.323 Sum_probs=15.9
Q ss_pred hCCCcEEEeCCCCCchhHH
Q 015093 75 CKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~ 93 (413)
..|.-+.+.||.|||||..
T Consensus 29 ~~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3567789999999999954
No 403
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=73.39 E-value=2.7 Score=39.15 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=16.1
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
..++++.||+|+|||..+-
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4579999999999997763
No 404
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=73.33 E-value=1.6 Score=36.00 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=13.5
Q ss_pred EEEeCCCCCchhHHH
Q 015093 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~ 94 (413)
+++.|++|||||..+
T Consensus 3 I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999876
No 405
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=73.32 E-value=18 Score=33.03 Aligned_cols=70 Identities=13% Similarity=0.199 Sum_probs=52.9
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCccE
Q 015093 110 QALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYIRM 185 (413)
Q Consensus 110 ~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~ 185 (413)
++||.|+++.-+....+.+.+. +..+..++|+.........+ .....|+|+|. ....+++..++++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~~ 371 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIKH 371 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCCE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCCE
Confidence 4999999999998888877764 67888999987765554433 34678999994 3456777888888
Q ss_pred EEEc
Q 015093 186 FVLD 189 (413)
Q Consensus 186 iIiD 189 (413)
||.-
T Consensus 372 VI~~ 375 (434)
T 2db3_A 372 VINY 375 (434)
T ss_dssp EEES
T ss_pred EEEE
Confidence 8753
No 406
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=72.79 E-value=1.3 Score=37.31 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.1
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
+..+++.|++|||||..+
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345899999999999765
No 407
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=72.77 E-value=4.3 Score=31.88 Aligned_cols=16 Identities=44% Similarity=0.393 Sum_probs=13.4
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
-+.+.++.|+|||...
T Consensus 8 ~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLL 23 (174)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3789999999999654
No 408
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=72.52 E-value=1.5 Score=35.67 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=14.7
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
+.-+.+.||.|||||..+
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 445789999999999764
No 409
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=72.35 E-value=2.2 Score=37.16 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=16.5
Q ss_pred hCCCcEEEeCCCCCchhHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~ 94 (413)
..|+.+.|.||+|+|||...
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHH
T ss_pred cCCCEEEEECCCCchHHHHH
Confidence 35777999999999999653
No 410
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=72.33 E-value=1.8 Score=34.27 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=13.3
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
.+.+.||.|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999654
No 411
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=72.28 E-value=2.1 Score=36.56 Aligned_cols=53 Identities=13% Similarity=-0.005 Sum_probs=28.6
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhh--hCCCcEEEeCCCCCchhHHH
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPF--CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~--~~~~~~lv~~~tGsGKT~~~ 94 (413)
...|+.+.-.+.....+...... +. ....+..+ .-.+.+++.+|+|+|||..+
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 45566666666665555432110 00 01122221 11234999999999999764
No 412
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=72.24 E-value=2.4 Score=37.18 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=13.0
Q ss_pred EEEeCCCCCchhHHH
Q 015093 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~ 94 (413)
++|.|+.|||||...
T Consensus 7 ~~i~G~~GaGKTTll 21 (318)
T 1nij_A 7 TLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEESSSSSCHHHH
T ss_pred EEEEecCCCCHHHHH
Confidence 789999999999654
No 413
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=72.19 E-value=1.8 Score=40.35 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=15.4
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+.+++.||+|+|||..+
T Consensus 49 p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356999999999999765
No 414
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=72.05 E-value=2 Score=35.04 Aligned_cols=15 Identities=20% Similarity=0.200 Sum_probs=13.5
Q ss_pred EEEeCCCCCchhHHH
Q 015093 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~ 94 (413)
+++.|++|||||..+
T Consensus 3 I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 3 IILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999876
No 415
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=72.02 E-value=1.9 Score=35.99 Aligned_cols=20 Identities=30% Similarity=0.327 Sum_probs=16.4
Q ss_pred hhCCCcEEEeCCCCCchhHH
Q 015093 74 FCKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~ 93 (413)
+..|+-+.+.||.|+|||..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 34577799999999999964
No 416
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=72.00 E-value=2 Score=35.98 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.1
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
+..+++.||.|||||..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999764
No 417
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=71.92 E-value=2.8 Score=35.03 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=15.9
Q ss_pred hCCCcEEEeCCCCCchhHH
Q 015093 75 CKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~ 93 (413)
..|.-+.+.||.|+|||..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp CTTEEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4567789999999999964
No 418
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=71.89 E-value=2.1 Score=33.59 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=18.1
Q ss_pred CCCcEEEeCCCCCchhHHHHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGI 98 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i 98 (413)
.|+.+++.++.|+|||..++..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 35669999999999997765433
No 419
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=71.71 E-value=2.3 Score=34.76 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=14.7
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
..+++.|++|||||..+
T Consensus 6 ~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999876
No 420
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=71.65 E-value=2.5 Score=38.85 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.8
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+++++.+|+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 467999999999999775
No 421
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=71.33 E-value=1.9 Score=33.29 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=15.5
Q ss_pred hCCCcEEEeCCCCCchhHH
Q 015093 75 CKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~ 93 (413)
..|.-+.+.+|.|+|||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4566688999999999964
No 422
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=71.09 E-value=1.7 Score=35.11 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=13.7
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
.+.|.|++|||||..+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3789999999999765
No 423
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=70.78 E-value=3 Score=33.30 Aligned_cols=41 Identities=17% Similarity=0.147 Sum_probs=25.3
Q ss_pred CCCccEEEEccchhh--hccCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 180 PDYIRMFVLDEADEM--LSRGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 180 ~~~~~~iIiDE~h~~--~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
....+++|+||+..+ .+..+...+.+++... ..+++.|.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeec
Confidence 455789999997655 3344566666666643 2355446664
No 424
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=70.69 E-value=2.1 Score=35.00 Aligned_cols=20 Identities=35% Similarity=0.333 Sum_probs=16.5
Q ss_pred hhCCCcEEEeCCCCCchhHH
Q 015093 74 FCKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~ 93 (413)
+..|+-+.+.||.|+|||..
T Consensus 32 i~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp EETTCCEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34577799999999999964
No 425
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=70.52 E-value=58 Score=28.96 Aligned_cols=74 Identities=16% Similarity=0.221 Sum_probs=54.6
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
..+++|.|+++.-+....+.+... +..+..++|+.......... .+..+|+|+|. ....+++...+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------VCARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC------ccccCCCccCC
Confidence 348999999999999888888775 66788888887765544333 34678999993 34567778788
Q ss_pred cEEEEccc
Q 015093 184 RMFVLDEA 191 (413)
Q Consensus 184 ~~iIiDE~ 191 (413)
++||.-..
T Consensus 336 ~~Vi~~~~ 343 (412)
T 3fht_A 336 SVVINFDL 343 (412)
T ss_dssp EEEEESSC
T ss_pred CEEEEECC
Confidence 88885443
No 426
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=70.52 E-value=1.9 Score=38.68 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=13.8
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
-.+|.||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999765
No 427
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=70.39 E-value=4.6 Score=31.52 Aligned_cols=16 Identities=19% Similarity=0.040 Sum_probs=13.3
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
-+.+.++.|||||...
T Consensus 6 ~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999754
No 428
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=70.34 E-value=4.2 Score=35.58 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=13.1
Q ss_pred EEEeCCCCCchhHHH
Q 015093 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~ 94 (413)
+.|.||+|||||..+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999764
No 429
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=70.27 E-value=3.8 Score=34.82 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=16.0
Q ss_pred hCCCcEEEeCCCCCchhHH
Q 015093 75 CKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~ 93 (413)
..|.-+.+.||.|||||..
T Consensus 35 ~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp ETTCEEEEECCTTSCHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 4577789999999999964
No 430
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=69.82 E-value=3.9 Score=37.54 Aligned_cols=35 Identities=20% Similarity=0.123 Sum_probs=21.7
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA 115 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~ 115 (413)
.++++++.|+|||.+....+... ... .+.+++++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l-~~~-~G~kVllvd 136 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFL-REK-HKKKVLVVS 136 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-HHT-SCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HHh-cCCeEEEEe
Confidence 47778999999998875544333 222 133565554
No 431
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=69.79 E-value=2.2 Score=36.54 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=16.0
Q ss_pred hCCCcEEEeCCCCCchhHH
Q 015093 75 CKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~ 93 (413)
.+|.-+.+.||.|||||..
T Consensus 32 ~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp ETTSEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4577789999999999964
No 432
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=69.68 E-value=8.3 Score=35.36 Aligned_cols=67 Identities=13% Similarity=0.042 Sum_probs=47.0
Q ss_pred eeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEE
Q 015093 109 CQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMF 186 (413)
Q Consensus 109 ~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~i 186 (413)
.+++|.||++.-++..++.+++. +.++..++|+..............+|+|+|. +...+++.. ...|
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~------v~e~GiDip-~~~V 238 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD------ISEMGANFK-ADRV 238 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG------GGGTSCCCC-CSEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc------hHHcCcccC-CcEE
Confidence 47999999999999888888775 6788888887443333334456789999993 233455554 4444
No 433
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=69.58 E-value=4 Score=36.68 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=21.2
Q ss_pred hhhCCCcEEEeCCCCCchhHHHHHHHHHhc
Q 015093 73 PFCKGLDVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 73 ~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l 102 (413)
.+-+|+..+|.++.|+|||... ..+...+
T Consensus 171 PigrGQR~lIfg~~g~GKT~Ll-~~Ia~~i 199 (427)
T 3l0o_A 171 PIGKGQRGMIVAPPKAGKTTIL-KEIANGI 199 (427)
T ss_dssp CCBTTCEEEEEECTTCCHHHHH-HHHHHHH
T ss_pred cccCCceEEEecCCCCChhHHH-HHHHHHH
Confidence 3456889999999999999765 3344433
No 434
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=69.40 E-value=2.2 Score=35.29 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=16.5
Q ss_pred hhCCCcEEEeCCCCCchhHH
Q 015093 74 FCKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~ 93 (413)
+.+|+-+.+.||.|+|||..
T Consensus 31 i~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp EETTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34577799999999999964
No 435
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=69.38 E-value=2.3 Score=40.51 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=16.3
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.+..+++.||+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667999999999999765
No 436
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=69.24 E-value=2.3 Score=36.00 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=16.5
Q ss_pred hhCCCcEEEeCCCCCchhHH
Q 015093 74 FCKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~ 93 (413)
+..|+-+.+.||.|+|||..
T Consensus 43 i~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 34577799999999999964
No 437
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=69.20 E-value=2.3 Score=35.73 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=16.1
Q ss_pred hCCCcEEEeCCCCCchhHH
Q 015093 75 CKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~ 93 (413)
..|+-+.+.||.|+|||..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4577799999999999964
No 438
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=68.77 E-value=2.4 Score=34.03 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=13.5
Q ss_pred EEEeCCCCCchhHHH
Q 015093 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~ 94 (413)
+.+.|++|||||.++
T Consensus 15 IgltG~~GSGKSTva 29 (192)
T 2grj_A 15 IGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 778999999999876
No 439
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=68.62 E-value=45 Score=32.45 Aligned_cols=77 Identities=17% Similarity=0.217 Sum_probs=56.5
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
+.+++|.|+++..+....+.+... ++.+..++++.........+ .+..+|+|+|. ....+++...+
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~------~l~~GlDip~v 508 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN------LLREGLDIPEV 508 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC------CCCTTCCCTTE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC------hhhcCccCCCC
Confidence 458999999999998888877775 67788888876655444332 34678999982 22567777888
Q ss_pred cEEEEccchhh
Q 015093 184 RMFVLDEADEM 194 (413)
Q Consensus 184 ~~iIiDE~h~~ 194 (413)
++||+=+++..
T Consensus 509 ~lVI~~d~d~~ 519 (664)
T 1c4o_A 509 SLVAILDADKE 519 (664)
T ss_dssp EEEEETTTTSC
T ss_pred CEEEEeCCccc
Confidence 99888887653
No 440
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=68.48 E-value=4.2 Score=35.18 Aligned_cols=20 Identities=30% Similarity=0.247 Sum_probs=15.2
Q ss_pred CcEEEeCCCCCchhHHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCSG 97 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~ 97 (413)
+-+.+.+++|+|||......
T Consensus 99 ~vi~i~G~~G~GKTT~~~~l 118 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKL 118 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34777899999999766443
No 441
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=68.45 E-value=3.9 Score=28.64 Aligned_cols=36 Identities=8% Similarity=0.048 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDM 313 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~ 313 (413)
+..+++++|.+-..+...+..|.+.|+++..+.|++
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 446899999998899999999999999988888884
No 442
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=68.28 E-value=4.4 Score=36.11 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=14.7
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
+.-+.+.||+|+|||...
T Consensus 157 g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 345889999999999764
No 443
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=68.25 E-value=2.9 Score=32.88 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=13.8
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
-.+|.+|+|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5789999999999664
No 444
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=68.24 E-value=3.9 Score=29.04 Aligned_cols=37 Identities=3% Similarity=0.061 Sum_probs=32.3
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMD 314 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~ 314 (413)
+..+++++|.+-..+...+..|.+.|+++..+.|++.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 4468999999988899999999999999999999853
No 445
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=68.22 E-value=4 Score=44.22 Aligned_cols=42 Identities=14% Similarity=-0.020 Sum_probs=30.7
Q ss_pred hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
..++.+++.+|+|+|||..++..+.+.+.. +.+++|+.-...
T Consensus 32 ~~G~i~lI~G~pGsGKT~LAlqla~~~~~~---G~~vlYI~te~~ 73 (1706)
T 3cmw_A 32 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHA 73 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTTSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhC---CCceEEEEecCc
Confidence 346789999999999998877666655433 347888876543
No 446
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=68.05 E-value=2.4 Score=34.59 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=14.0
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
.+.+.|+.|||||..+
T Consensus 6 ~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 6 IVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999765
No 447
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=67.93 E-value=22 Score=31.16 Aligned_cols=73 Identities=12% Similarity=0.219 Sum_probs=51.2
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhh----CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-cc-----ccCCCCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRS----RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LL-----ARGIDVQQ 347 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~-----~~G~d~~~ 347 (413)
...+++|.+|++..+.++++.+.+ .+..+..++|+....+....+. ..+|+|+|. .+ ...+++..
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~~~ 147 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKN 147 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTS
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCccccc
Confidence 456899999999998888888875 3667888888887655443332 567999995 21 12355677
Q ss_pred CCEEEEcC
Q 015093 348 VSLVINYD 355 (413)
Q Consensus 348 ~~~vi~~~ 355 (413)
++.+|+-+
T Consensus 148 ~~~iIiDE 155 (367)
T 1hv8_A 148 VKYFILDE 155 (367)
T ss_dssp CCEEEEET
T ss_pred CCEEEEeC
Confidence 78777644
No 448
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=67.87 E-value=4.2 Score=44.78 Aligned_cols=48 Identities=15% Similarity=-0.008 Sum_probs=33.7
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIE 125 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~ 125 (413)
+..++.+++.+|+|+|||..+...+.+.... +.+++++.-. ++.++..
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~---Ge~~~Fit~e-e~~~~L~ 1125 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAE-HALDPIY 1125 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTT-SCCCHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEcc-ccHHHHH
Confidence 3456789999999999998887766666544 3477877643 4444444
No 449
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=67.75 E-value=2.5 Score=35.69 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=16.3
Q ss_pred hhCCCcEEEeCCCCCchhHH
Q 015093 74 FCKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~ 93 (413)
+..|.-+.+.||.|+|||..
T Consensus 30 i~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EeCCCEEEEECCCCCCHHHH
Confidence 34577789999999999964
No 450
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=67.75 E-value=3.8 Score=39.57 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=18.4
Q ss_pred hhhCCCcEEEeCCCCCchhHHH
Q 015093 73 PFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 73 ~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
.+..+..+++.||+|+|||..+
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 3456788999999999999765
No 451
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=67.71 E-value=4.2 Score=28.64 Aligned_cols=36 Identities=8% Similarity=0.048 Sum_probs=31.2
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDM 313 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~ 313 (413)
+..+++++|.+-..+...+..|.+.|+++..+.|++
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 446899999998889999999999999988888874
No 452
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=67.65 E-value=4.1 Score=28.39 Aligned_cols=36 Identities=8% Similarity=0.099 Sum_probs=31.7
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDM 313 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~ 313 (413)
+..+++++|.+-..+...+..|.+.|+++..+.|++
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 446899999999899999999999999988888885
No 453
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=67.51 E-value=8.2 Score=35.50 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=46.8
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEE
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFV 187 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iI 187 (413)
+.+++|.||++.-++..++.++.. +.++..++|+..............+|+|+|. ....+++.. +++||
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~------v~e~GiDip-v~~VI 245 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD------IAEMGANLC-VERVL 245 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS------STTCCTTCC-CSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC------hhheeeccC-ceEEE
Confidence 348999999999999988888775 6788888885544333444456789999993 234566666 77776
No 454
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=67.40 E-value=2.3 Score=35.10 Aligned_cols=19 Identities=37% Similarity=0.330 Sum_probs=15.8
Q ss_pred hCCCcEEEeCCCCCchhHH
Q 015093 75 CKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~ 93 (413)
..|.-+.+.||.|+|||..
T Consensus 28 ~~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp ETTCEEEEEECTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567789999999999954
No 455
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=67.32 E-value=2.6 Score=35.15 Aligned_cols=19 Identities=37% Similarity=0.420 Sum_probs=15.9
Q ss_pred hCCCcEEEeCCCCCchhHH
Q 015093 75 CKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~ 93 (413)
..|.-+.+.||.|+|||..
T Consensus 30 ~~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567789999999999964
No 456
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=67.31 E-value=3.6 Score=34.59 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.8
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.+..+.|.||.|||||..+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556899999999999765
No 457
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=67.30 E-value=2.9 Score=33.52 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=14.0
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
.+.|.+++|||||..+
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999775
No 458
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=66.73 E-value=2.8 Score=35.56 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=15.8
Q ss_pred hCCCcEEEeCCCCCchhHH
Q 015093 75 CKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~ 93 (413)
..|.-+.+.||.|+|||..
T Consensus 30 ~~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567789999999999964
No 459
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=66.69 E-value=2.6 Score=36.48 Aligned_cols=16 Identities=19% Similarity=0.271 Sum_probs=14.0
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
-+++.|++|||||..+
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999875
No 460
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=66.39 E-value=2.9 Score=35.34 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=15.9
Q ss_pred hCCCcEEEeCCCCCchhHH
Q 015093 75 CKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~ 93 (413)
..|.-+.+.||.|+|||..
T Consensus 39 ~~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCcEEEEECCCCCCHHHH
Confidence 3567789999999999964
No 461
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=66.38 E-value=3 Score=34.46 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=15.9
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.|.-+++.|+.|+|||...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~ 43 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVI 43 (229)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4556899999999999765
No 462
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=66.36 E-value=2.8 Score=35.61 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=16.8
Q ss_pred hhCCCcEEEeCCCCCchhHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~ 94 (413)
+..|.-+.+.||.|+|||...
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLS 63 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 345777899999999999653
No 463
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=66.25 E-value=2.8 Score=35.20 Aligned_cols=20 Identities=20% Similarity=0.219 Sum_probs=16.4
Q ss_pred hhCCCcEEEeCCCCCchhHH
Q 015093 74 FCKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~ 93 (413)
+..|.-+.+.||.|+|||..
T Consensus 23 i~~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp EETTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 34577789999999999964
No 464
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=66.19 E-value=3.3 Score=36.89 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=15.1
Q ss_pred CCc--EEEeCCCCCchhHHH
Q 015093 77 GLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~--~lv~~~tGsGKT~~~ 94 (413)
|.+ ++..|.||||||.+.
T Consensus 83 G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 83 GCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp CCEEEEEEECCTTSSHHHHH
T ss_pred CceeEEEeeCCCCCCCCEEE
Confidence 655 688999999999775
No 465
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=66.05 E-value=3.8 Score=36.79 Aligned_cols=20 Identities=20% Similarity=0.044 Sum_probs=16.3
Q ss_pred hCCCcEEEeCCCCCchhHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~ 94 (413)
..++.+++.||+|+|||...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34667999999999999654
No 466
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=66.04 E-value=2.9 Score=35.50 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=15.9
Q ss_pred hCCCcEEEeCCCCCchhHH
Q 015093 75 CKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~ 93 (413)
..|.-+.+.||.|+|||..
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3567789999999999964
No 467
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=65.93 E-value=3 Score=35.60 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=16.4
Q ss_pred hhCCCcEEEeCCCCCchhHH
Q 015093 74 FCKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~ 93 (413)
+..|.-+.|.||.|+|||..
T Consensus 42 i~~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 34577789999999999954
No 468
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=65.92 E-value=2.3 Score=38.16 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.1
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
+-.++.|+||+|||...
T Consensus 26 gl~vi~G~NGaGKT~il 42 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34799999999999764
No 469
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=65.92 E-value=2.9 Score=35.20 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=15.9
Q ss_pred hCCCcEEEeCCCCCchhHH
Q 015093 75 CKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~ 93 (413)
..|.-+.+.||.|+|||..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp ETTCEEEEECCSSSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4567789999999999964
No 470
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=65.91 E-value=4.3 Score=37.83 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=20.8
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEE
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVL 114 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl 114 (413)
.-+.+.|+.|+|||...- .+ ..+.... ++++++.
T Consensus 294 eVI~LVGpNGSGKTTLl~-~L-Agll~~~-~G~V~l~ 327 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIG-KL-ARQFEQQ-GKSVMLA 327 (503)
T ss_dssp EEEEEECCTTSSHHHHHH-HH-HHHHHHT-TCCEEEE
T ss_pred eEEEEECCCcccHHHHHH-HH-HHHhhhc-CCeEEEe
Confidence 347899999999997542 22 2222222 3366665
No 471
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=65.91 E-value=2 Score=33.68 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=13.3
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
.+.|.+++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999764
No 472
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=65.73 E-value=2.9 Score=35.11 Aligned_cols=20 Identities=25% Similarity=0.159 Sum_probs=16.4
Q ss_pred hCCCcEEEeCCCCCchhHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~ 94 (413)
..|.-+.+.||.|+|||...
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLG 46 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45777899999999999653
No 473
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=65.70 E-value=3 Score=35.37 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=15.9
Q ss_pred hCCCcEEEeCCCCCchhHH
Q 015093 75 CKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~ 93 (413)
..|+-+.+.||.|+|||..
T Consensus 48 ~~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEEcCCCCcHHHH
Confidence 3567789999999999964
No 474
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=65.58 E-value=3 Score=39.07 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.8
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
+.+++.+|+|+|||..+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45999999999999765
No 475
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=69.12 E-value=1.3 Score=34.69 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=46.8
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
+.++||.|+++..+....+.++.. +..+..++|+.........+ .....|+|+| +. ...++++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-~~-----~~~Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-DV-----AARGIDIPDV 99 (170)
Confidence 458999999999888877777654 66677777776544333222 2356788888 22 2334455556
Q ss_pred cEEEEccc
Q 015093 184 RMFVLDEA 191 (413)
Q Consensus 184 ~~iIiDE~ 191 (413)
++||.-+.
T Consensus 100 ~~Vi~~~~ 107 (170)
T 2yjt_D 100 SHVFNFDM 107 (170)
Confidence 66665443
No 476
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=65.35 E-value=2.8 Score=35.01 Aligned_cols=18 Identities=11% Similarity=0.146 Sum_probs=14.8
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
+.-+-|.||.|||||+.+
T Consensus 25 g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp SEEEEEECSTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 445788999999999765
No 477
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=65.17 E-value=5.7 Score=36.28 Aligned_cols=35 Identities=23% Similarity=0.117 Sum_probs=21.1
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA 115 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~ 115 (413)
+.+.+.++.|+|||......+.. + ... +.+++++.
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~-l-~~~-g~~Vllvd 133 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALY-Y-KGK-GRRPLLVA 133 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH-H-HTT-TCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-H-HHc-CCeEEEee
Confidence 34777899999999776443322 2 222 33555554
No 478
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=65.11 E-value=2.7 Score=42.22 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=16.3
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.++.+++.||+|+|||..+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4677999999999999765
No 479
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=64.97 E-value=3 Score=35.69 Aligned_cols=20 Identities=35% Similarity=0.410 Sum_probs=16.4
Q ss_pred hhCCCcEEEeCCCCCchhHH
Q 015093 74 FCKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~ 93 (413)
+..|.-+.+.||.|+|||..
T Consensus 44 i~~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp EETTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 34577789999999999964
No 480
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=64.78 E-value=10 Score=30.79 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=18.8
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcc
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~ 103 (413)
+|.-+++.|+.|+|||...- .+.+.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~-~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARN-VVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHH-HHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH-HHHHHHH
Confidence 35668899999999997753 3334443
No 481
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=64.65 E-value=3.1 Score=34.96 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=14.4
Q ss_pred cEEEeCCCCCchhHHHH
Q 015093 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~ 95 (413)
.+.|.|++|||||..+-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998763
No 482
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=64.48 E-value=6.8 Score=40.26 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=39.4
Q ss_pred ccCccCCC--CCHHHHHHHHhCCCCC--C--cHHHHhhhhhhhC---CCcEEEeCCCCCchhHHHHH
Q 015093 39 YDSFDSMG--LKENLLRGIYAYGFEK--P--SAIQQRGIVPFCK---GLDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 39 ~~~~~~~~--l~~~~~~~l~~~~~~~--~--~~~Q~~~~~~~~~---~~~~lv~~~tGsGKT~~~~~ 96 (413)
.++|..++ .++...+........+ | +.+=..|+..+.. ++.+||.|..|+|||.+.=.
T Consensus 97 VNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~ 163 (1052)
T 4anj_A 97 VNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF 163 (1052)
T ss_dssp ECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH
T ss_pred ECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHH
Confidence 57788875 4778777776554433 3 2334556666544 45599999999999988743
No 483
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=64.24 E-value=12 Score=32.46 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=32.0
Q ss_pred CCHHHHHHHHhCCCCCC-----cHHHHhhhhhhh-----------------CCCcEEEeCCCCCchhHHHHHH
Q 015093 47 LKENLLRGIYAYGFEKP-----SAIQQRGIVPFC-----------------KGLDVIQQAQSGTGKTATFCSG 97 (413)
Q Consensus 47 l~~~~~~~l~~~~~~~~-----~~~Q~~~~~~~~-----------------~~~~~lv~~~tGsGKT~~~~~~ 97 (413)
.++.+.+..++.+++-+ +..-...+..++ .|+.+++.|+.|+|||..++..
T Consensus 92 ~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l 164 (314)
T 1ko7_A 92 PPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALEL 164 (314)
T ss_dssp CCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHH
T ss_pred CCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHH
Confidence 58888898888877611 111111111111 1567999999999998776443
No 484
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=64.23 E-value=3.1 Score=35.88 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=13.6
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
-+.|.|++|||||..+
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999765
No 485
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=63.99 E-value=6.7 Score=44.74 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=17.0
Q ss_pred hCCCcEEEeCCCCCchhHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~ 94 (413)
..++.++++||||+|||..+
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHH
T ss_pred HCCCeEEEECCCCCCHHHHH
Confidence 34678999999999999765
No 486
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=63.98 E-value=3.4 Score=33.70 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=48.5
Q ss_pred CCcEEEEEcCcccHHHHHHHHhhC--------CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-----cccc-CCC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRSR--------DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-----LLAR-GID 344 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-----~~~~-G~d 344 (413)
..+++|.+|+++.+.++++.+++. +..+..++|+.+..+..+ .+ ....+|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 458999999999998888877653 567778888865432211 11 23567999995 2222 356
Q ss_pred CCCCCEEEEcC
Q 015093 345 VQQVSLVINYD 355 (413)
Q Consensus 345 ~~~~~~vi~~~ 355 (413)
+..++.+|+-+
T Consensus 148 ~~~~~~lViDE 158 (219)
T 1q0u_A 148 VHTAHILVVDE 158 (219)
T ss_dssp GGGCCEEEECS
T ss_pred cCcceEEEEcC
Confidence 66778877644
No 487
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=63.84 E-value=4 Score=40.69 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=16.2
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
..++++.||+|+|||..+-
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4579999999999998763
No 488
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=63.39 E-value=13 Score=36.39 Aligned_cols=69 Identities=9% Similarity=0.103 Sum_probs=47.2
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEE
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFV 187 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iI 187 (413)
+.+++|.||++.-++..++.+++. +.++..++|...............+|+|+|. +...+++.. ++.||
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTd------v~e~GIDip-v~~VI 478 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITTD------ISEMGANFG-ASRVI 478 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEECG------GGGTTCCCC-CSEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEECc------hhhcceeeC-CcEEE
Confidence 448999999999988888777664 7788889885332222222345678999993 234556666 67765
No 489
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=63.21 E-value=2.2 Score=34.67 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=13.2
Q ss_pred EEEeCCCCCchhHHH
Q 015093 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~ 94 (413)
+++.|+.|||||..+
T Consensus 3 I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999765
No 490
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=63.08 E-value=3.2 Score=36.20 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=15.3
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.|.-+.|.||.|||||..+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCchHHHHH
Confidence 3455889999999999664
No 491
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=63.01 E-value=84 Score=29.13 Aligned_cols=94 Identities=13% Similarity=0.071 Sum_probs=57.0
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCccE
Q 015093 110 QALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYIRM 185 (413)
Q Consensus 110 ~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~ 185 (413)
..++++.+..-+....+.+... +.++..++|+.......... .+..+|+|+|++.+. .+++..++++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~-----~GiDip~v~~ 419 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS-----TGISVKNLHH 419 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH-----HSCCCCSEEE
T ss_pred CeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh-----cccccccCcE
Confidence 4445555555555555554443 45788899887755443332 456789999977664 4567778899
Q ss_pred EEEccchhhhccCcHHHHHHHHhhCCCC
Q 015093 186 FVLDEADEMLSRGFKDQIYDIFQHLPGK 213 (413)
Q Consensus 186 iIiDE~h~~~~~~~~~~~~~~~~~~~~~ 213 (413)
||+.....-. ..+.....++.+.-+.+
T Consensus 420 vi~~~~~~s~-~~~~Q~~GR~gR~g~~~ 446 (510)
T 2oca_A 420 VVLAHGVKSK-IIVLQTIGRVLRKHGSK 446 (510)
T ss_dssp EEESSCCCSC-CHHHHHHHHHHTTTCCC
T ss_pred EEEeCCCCCH-HHHHHHHhcccccCCCC
Confidence 9998877321 22444455555554443
No 492
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=62.94 E-value=14 Score=37.08 Aligned_cols=73 Identities=14% Similarity=0.188 Sum_probs=48.0
Q ss_pred CCcEEEEEcCcccHHHHHHHHhhC----CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-cc----ccC-C-CCCC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRSR----DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LL----ARG-I-DVQQ 347 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~----~~G-~-d~~~ 347 (413)
.+++||.+|++..+....+.+++. ++.+..++|+.+...+...+. +..+|+|+|. .+ ..+ + ++..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999888877777654 889999999986654432222 2577999995 22 222 3 5566
Q ss_pred CCEEEEcC
Q 015093 348 VSLVINYD 355 (413)
Q Consensus 348 ~~~vi~~~ 355 (413)
++.||+-.
T Consensus 372 ~~~iViDE 379 (797)
T 4a2q_A 372 FTLMIFDE 379 (797)
T ss_dssp CSEEEETT
T ss_pred CCEEEEEC
Confidence 78887644
No 493
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=62.89 E-value=3.4 Score=34.15 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=13.7
Q ss_pred hCCCcEEEeCCCCCchhHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~ 94 (413)
.+|.-+++.|+.|+|||...
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~ 42 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHL 42 (227)
T ss_dssp CCCCEEEEECCC---CHHHH
T ss_pred cCCeEEEEECCCCCCHHHHH
Confidence 35666899999999999775
No 494
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=62.67 E-value=4.9 Score=32.42 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=13.7
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
-.+|.||+|+|||...
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4789999999999764
No 495
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=62.63 E-value=3 Score=35.74 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=14.4
Q ss_pred cEEEeCCCCCchhHHHH
Q 015093 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~ 95 (413)
.+.|.|+.|||||.++-
T Consensus 77 iI~I~G~~GSGKSTva~ 93 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQ 93 (281)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 38899999999997763
No 496
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=62.60 E-value=11 Score=35.53 Aligned_cols=73 Identities=14% Similarity=0.188 Sum_probs=48.1
Q ss_pred CCcEEEEEcCcccHHHHHHHHhhC----CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-cc----ccC-C-CCCC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRSR----DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LL----ARG-I-DVQQ 347 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~----~~G-~-d~~~ 347 (413)
.+++||.+|++..+...++.+++. ++.+..++|+.+...+...+. ...+|+|+|. .+ ..+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999888887777664 889999999986554432222 1367999995 22 222 3 5667
Q ss_pred CCEEEEcC
Q 015093 348 VSLVINYD 355 (413)
Q Consensus 348 ~~~vi~~~ 355 (413)
++.+|+-.
T Consensus 131 ~~~vViDE 138 (556)
T 4a2p_A 131 FTLMIFDE 138 (556)
T ss_dssp CSEEEEET
T ss_pred CCEEEEEC
Confidence 88887643
No 497
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=62.58 E-value=3.5 Score=34.00 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=15.1
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
+|.-+.+.|+.|||||...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~ 37 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYL 37 (230)
T ss_dssp CCEEEEEECSTTSCHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 3455889999999999753
No 498
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=62.44 E-value=3.6 Score=33.06 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=13.9
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
.+.|.+++|||||..+
T Consensus 4 ~i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999776
No 499
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=62.18 E-value=6.3 Score=37.25 Aligned_cols=42 Identities=21% Similarity=0.229 Sum_probs=26.5
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
+..|.-++|.+++|+|||......+- .... . +.+++++++..
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g-~~~~-~-G~~vi~~~~ee 319 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVE-NACA-N-KERAILFAYEE 319 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHH-HHHT-T-TCCEEEEESSS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHH-HHHh-C-CCCEEEEEEeC
Confidence 44567799999999999976543332 2222 2 33677776643
No 500
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=62.11 E-value=4.1 Score=32.77 Aligned_cols=17 Identities=29% Similarity=0.165 Sum_probs=14.3
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
.-+.+.|+.|||||..+
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 44889999999999765
Done!