BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015095
(413 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|2HIG|B Chain B, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|3F5M|A Chain A, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|B Chain B, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|C Chain C, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|D Chain D, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
Length = 487
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 135/332 (40%), Positives = 193/332 (58%), Gaps = 23/332 (6%)
Query: 89 YPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRG--------VHFRRAGPREKVYF 140
YPNP KK + + F D + N +D P + A R +++F
Sbjct: 39 YPNPSKKYSS----RTEFRDKTDYIMYNPR-PRDEPSSENPVSVSPLLCELAAARSRIHF 93
Query: 141 KSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLT---L 197
E IVTCGG+CPG+N VIR I +Y V ++G GY G K + T L
Sbjct: 94 NPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIEL 153
Query: 198 SPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVE 257
V +IH GGTIL +SRG D ++VD +E G+N ++ +GGDGTQ+GA +I +E +
Sbjct: 154 HRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAK 213
Query: 258 KRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMG 317
+RG+ ++V G+PKTIDND++ ++FGF TAVE+A +AI AA+ E S GVG+VKLMG
Sbjct: 214 RRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMG 273
Query: 318 RYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQE 377
R SGFI+ A +AS + CL+PE+P + + +ER+ + VI+VAEG GQ+
Sbjct: 274 RDSGFIAAQAAVASAQANICLVPENPISEQ---EVMSLLERRFCHSRSCVIIVAEGFGQD 330
Query: 378 FVAQSMPAVDEKDASGNRLLLDIGLWLTQKIK 409
+ S DASGN+ L+DIG+ LT+K+K
Sbjct: 331 WGRGS----GGYDASGNKKLIDIGVILTEKVK 358
>pdb|1MTO|A Chain A, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|B Chain B, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|C Chain C, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|D Chain D, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|E Chain E, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|F Chain F, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|G Chain G, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|H Chain H, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
Length = 319
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 125/240 (52%), Gaps = 25/240 (10%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDI 205
R ++T GG PG+N IR +V Y +GV E+ G+ GY G + N L V DI
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKAIY-HGV-EVYGVYHGYAGLIAGNIKKLEVGDVGDI 60
Query: 206 HKRGGTILRTSR-----GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG 260
RGGTIL T+R K ++ ++ GI + +IGGDG+ +GA K++ + G
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGA----KKLTEHG 116
Query: 261 LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS 320
G+P TIDNDI D + GFDTA+ AI+ S E ++++MGR++
Sbjct: 117 F--PCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHER-TWVIEVMGRHA 173
Query: 321 GFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLK--ENG--HMVIVVAEGAGQ 376
G I++Y+ LA + LIPE+ + + + I R + E G H +I+VAEG G
Sbjct: 174 GDIALYSGLAG-GAETILIPEADYDMN------DVIARLKRGHERGKKHSIIIVAEGVGS 226
>pdb|3PFK|A Chain A, Phosphofructokinase. Structure And Control
pdb|4PFK|A Chain A, Phosphofructokinase. Structure And Control
Length = 319
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 125/239 (52%), Gaps = 25/239 (10%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDI 205
R ++T GG PG+N IR +V Y +GV E+ G+ GY G + N L V DI
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKAIY-HGV-EVYGVYHGYAGLIAGNIKKLEVGDVGDI 60
Query: 206 HKRGGTILRTSR-----GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG 260
RGGTIL T+R K ++ ++ GI + +IGGDG+ +GA K++ + G
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGA----KKLTEHG 116
Query: 261 LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS 320
G+P TIDNDI D + GFDTA+ AI+ S E ++++MGR++
Sbjct: 117 F--PCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGRHA 173
Query: 321 GFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLK--ENG--HMVIVVAEGAG 375
G I++++ LA + LIPE+ + + + I R + E G H +I+VAEG G
Sbjct: 174 GDIALWSGLAG-GAETILIPEADYDMN------DVIARLKRGHERGKKHSIIIVAEGVG 225
>pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State
pdb|6PFK|B Chain B, Phosphofructokinase, Inhibited T-State
pdb|6PFK|C Chain C, Phosphofructokinase, Inhibited T-State
pdb|6PFK|D Chain D, Phosphofructokinase, Inhibited T-State
pdb|3U39|A Chain A, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|B Chain B, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|C Chain C, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|D Chain D, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
Length = 319
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 125/240 (52%), Gaps = 25/240 (10%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDI 205
R ++T GG PG+N IR +V Y +GV E+ G+ GY G + N L V DI
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKAIY-HGV-EVYGVYHGYAGLIAGNIKKLEVGDVGDI 60
Query: 206 HKRGGTILRTSR-----GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG 260
RGGTIL T+R K ++ ++ GI + +IGGDG+ +GA K++ + G
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGA----KKLTEHG 116
Query: 261 LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS 320
G+P TIDNDI D + GFDTA+ AI+ S E ++++MGR++
Sbjct: 117 F--PCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGRHA 173
Query: 321 GFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLK--ENG--HMVIVVAEGAGQ 376
G I++++ LA + LIPE+ + + + I R + E G H +I+VAEG G
Sbjct: 174 GDIALWSGLAG-GAETILIPEADYDMN------DVIARLKRGHERGKKHSIIIVAEGVGS 226
>pdb|4A3S|A Chain A, Crystal Structure Of Pfk From Bacillus Subtilis
pdb|4A3S|B Chain B, Crystal Structure Of Pfk From Bacillus Subtilis
Length = 319
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 120/240 (50%), Gaps = 25/240 (10%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDI 205
R ++T GG PG+N +R +V +Y E+ GI GY G S L V DI
Sbjct: 3 RIGVLTSGGDSPGMNAAVRAVV--RKAIYHDVEVYGIYNGYAGLISGKIEKLELGSVGDI 60
Query: 206 HKRGGTILRTSR-----GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG 260
RGGT L T+R K + N++ GI + +IGGDG+ GA K++ + G
Sbjct: 61 IHRGGTKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGA----KKLTEHG 116
Query: 261 LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS 320
G+P TIDNDI D + GFDTA+ AI+ S E ++++MGR++
Sbjct: 117 F--PCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGRHA 173
Query: 321 GFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLK--ENG--HMVIVVAEGAGQ 376
G I+++A LA + LIPE+ + + E I R + E G H +I+VAEG G
Sbjct: 174 GDIALWAGLAG-GAESILIPEADY------DMHEIIARLKRGHERGKKHSIIIVAEGVGS 226
>pdb|1PFK|A Chain A, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|1PFK|B Chain B, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|2PFK|A Chain A, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|B Chain B, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|C Chain C, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|D Chain D, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
Length = 320
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 106/204 (51%), Gaps = 15/204 (7%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208
++T GG PG+N IR +V S + E++GI GY G Y + L V+D+ R
Sbjct: 7 VLTSGGDAPGMNAAIRGVV--RSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINR 64
Query: 209 GGTILRTSR--GGHDTN---KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263
GGT L ++R D N ++N++ RGI+ + +IGGDG+ GA + + +
Sbjct: 65 GGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTE------MGF 118
Query: 264 AVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFI 323
G+P TIDNDI D + GF TA+ AI+ + S + +V++MGRY G +
Sbjct: 119 PCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLR-DTSSSHQRISVVEVMGRYCGDL 177
Query: 324 SMYATLASRDVDCCLIPESPFYLE 347
++ A +A + ++PE F E
Sbjct: 178 TLAAAIAG-GCEFVVVPEVEFSRE 200
>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From
Lactobacillus Delbrueckii
Length = 319
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 125/247 (50%), Gaps = 27/247 (10%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDI 205
R I+T GG PG+N +R V ++ G+ E+ GI G+ G + + L + V +
Sbjct: 3 RIGILTSGGDAPGMNAAVRA-VTRVAIANGL-EVFGIRYGFAGLVAGDIFPLESEDVAHL 60
Query: 206 HKRGGTILRTSRG---GHDTNKI--VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG 260
GT L ++R + ++ ++ ++ GI+ V +IGGDG+ GA ++ + G
Sbjct: 61 INVSGTFLYSARYPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGAL----QLTRHG 116
Query: 261 LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS 320
G+P TIDNDI D + G+DTA A AI+ + S + V IV +MGR
Sbjct: 117 FNSI--GLPGTIDNDIPYTDATIGYDTACMTAMDAIDKIR-DTASSHHRVFIVNVMGRNC 173
Query: 321 GFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIER--QLKENG--HMVIVVAEG--A 374
G I+M +A D +IPE P+ +E E R Q +E+G H ++VVAEG
Sbjct: 174 GDIAMRVGVAC-GADAIVIPERPYDVE------EIANRLKQAQESGKDHGLVVVAEGVMT 226
Query: 375 GQEFVAQ 381
+F+A+
Sbjct: 227 ADQFMAE 233
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
Length = 555
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 113/247 (45%), Gaps = 18/247 (7%)
Query: 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKV 201
S + I+ GG PG + VI + + ++ G +GG G + + L+ +
Sbjct: 70 SKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESL 129
Query: 202 VNDIHKRGG-TILRTSRGGHDT----NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEV 256
+N GG I+ + R +T NK + ++ +N + IIGGD + AA++ +
Sbjct: 130 INSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYF 189
Query: 257 EKRGLQVAVAGIPKTIDNDIAV--IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVK 314
+K G + V G+PKTID D+ I+ SFGFD+A + I + S + VK
Sbjct: 190 KKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVK 249
Query: 315 LMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIE--------RQLKENGHM 366
LMGR + +++ L + + C++ E L L E I+ R L +
Sbjct: 250 LMGRSASHVALECALKTHP-NICIVSEE--VLAKKKTLSEIIDEMVSVILKRSLNGDNFG 306
Query: 367 VIVVAEG 373
V++V EG
Sbjct: 307 VVIVPEG 313
>pdb|3OPY|B Chain B, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|D Chain D, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|F Chain F, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|H Chain H, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 941
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 139/317 (43%), Gaps = 46/317 (14%)
Query: 123 SPRGVHFRRAGPR---EKVYFKSDE-------VRACI--VTCGGLCPGINTVIREIVCGL 170
+P V+ R P+ EK Y D+ VR I +T GG PG+N +R +V
Sbjct: 148 NPFAVNERSLLPKVSEEKAYRAEDDSEKLLNPVRKTIGVMTSGGDSPGMNPFVRAVV--R 205
Query: 171 SYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHK---RGGTILRTSRGGHDTN---- 223
+ +Y ++ I GY G + +D+ GGT + T+R
Sbjct: 206 AGIYKGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGTARCKEFRERSGR 265
Query: 224 -KIVDNIEDRGINQVYIIGGDGTQKGA--------ALIYKEVEKRGLQ---------VAV 265
K N+ D GI+ + + GGDG+ GA +LI + ++ + + +
Sbjct: 266 LKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNI 325
Query: 266 AGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISM 325
G +IDND++ D + G ++++ RAI+ S IV++MGR+ G++ +
Sbjct: 326 CGAVGSIDNDMSSTDATIGAFSSLDRICRAIDYIDATANSHSRAF-IVEVMGRHCGWLGL 384
Query: 326 YATLASRDVDCCLIPESPF-YLEGPGGLFEFI-ERQLKENGHMVIVVAEGA-GQEFVAQS 382
A LA+ D LIPE P E + + + + + + +++VAEGA + S
Sbjct: 385 LAGLAT-SADYILIPEKPASSREWQDQMCDIVGKHRARGKRKTIVIVAEGAISNDLSPIS 443
Query: 383 MPAVDEKDASGNRLLLD 399
V KD NRL LD
Sbjct: 444 CDQV--KDVLVNRLGLD 458
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 6/138 (4%)
Query: 261 LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS 320
L++ + IP TI N++ + S G DT + + + N V +V++ G S
Sbjct: 691 LRIPLVLIPATISNNVPGTEYSLGSDTCLNSFMEYCDVIKQSAAATRNRVFVVEVQGGNS 750
Query: 321 GFISMYATLASRDVDCCLIPESPFYLE----GPGGLFE-FIERQLKENGHMVIVVAEGAG 375
G+I+ +A LA +PE L L E F Q K +I+ +E A
Sbjct: 751 GYIATHAQLAC-GAQISYVPEEGISLAQLEMDINSLKESFANDQGKTKSGRLILKSENAS 809
Query: 376 QEFVAQSMPAVDEKDASG 393
+ + + + + +ASG
Sbjct: 810 KVLTTEVISTIIDDEASG 827
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 787
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 129/283 (45%), Gaps = 36/283 (12%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFY--SKNTLTLSPKVVN 203
+ ++T GG PG+N +R +V +G D + + GY G K ++ + V
Sbjct: 7 KIAVMTSGGDSPGMNAAVRAVV-RTGIHFGCD-VFAVYEGYEGLLRGGKYLKKMAWEDVR 64
Query: 204 DIHKRGGTILRTSRG-----GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKE--- 255
GGT++ T+R + N+ +GI+ + + GGDG+ GA L E
Sbjct: 65 GWLSEGGTLIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPS 124
Query: 256 ------VEKRGLQVAVA--------GIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHV 301
E R + VA G+ +IDND++ D + G +A+E ++
Sbjct: 125 LVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTDSTIGAYSALERICEMVDYIDA 184
Query: 302 EVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPF-YLEGPGGLFEFIER-Q 359
+S +V++MGR+ G++++ A +A+ D IPE + + L E +R +
Sbjct: 185 TAKSHSRAF-VVEVMGRHCGWLALMAGIAT-GADYIFIPERAVPHGKWQDELKEVCQRHR 242
Query: 360 LKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGL 402
K + I+VAEGA + + + A D KDA L+++GL
Sbjct: 243 SKGRRNNTIIVAEGALDDQL-NPVTANDVKDA-----LIELGL 279
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 62/152 (40%), Gaps = 4/152 (2%)
Query: 182 IEGGYRGFYSKNTLT-LSPKVVNDIHKRGGTILRTSR--GGHDTNKIVDNIEDRGINQVY 238
I G+ G + LS V + H GG+ + T+R D I + ++ +
Sbjct: 429 IMNGFSGLIQTGEVKELSWIDVENWHNLGGSEIGTNRSVASEDLGTIAYYFQKNKLDGLI 488
Query: 239 IIGG-DGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297
I+GG +G + L + + + IP T+ N++ + S G DT + +
Sbjct: 489 ILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCLNALVNYTD 548
Query: 298 AAHVEVESVENGVGIVKLMGRYSGFISMYATL 329
+ V + ++ G +SG+I+ + L
Sbjct: 549 DIKQSASATRRRVFVCEVQGGHSGYIASFTGL 580
>pdb|3K2Q|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
Length = 420
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 24/222 (10%)
Query: 205 IHKRGGT-------ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVE 257
IH GG + S + ++++ I + GG +Q A + + +
Sbjct: 69 IHTPGGAFGSCRYKLKNISENQREYERLIEVFRAHDIGYFFYNGGGDSQDTAYKVSQLAD 128
Query: 258 KRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESV---ENGVGIVK 314
+ G + G+PKT+DND+ D GF + + + A ++++S+ V I++
Sbjct: 129 RMGYPITCIGVPKTVDNDLPFTDCCPGFGSVAKYIATSTLEASLDIKSMCETSTKVFILE 188
Query: 315 LMGRYSGFISMYATLASRD----VDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVV 370
+MGR++G+I+ LA + L PE PF E E +++ +++ G+ V+V
Sbjct: 189 VMGRHAGWIAAAGGLAGQSEGEPPHVILFPEIPFNRE---KFLERVDQCVRDYGYCVVVA 245
Query: 371 AEGAGQE---FVAQSMPAVDEKDASGNRLLLDIGLWLTQKIK 409
+EGA E FVA + KDA G+ L + L +K
Sbjct: 246 SEGAQYEDGRFVADA----GAKDAFGHTQLGGVAPALANMVK 283
>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8L|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
Length = 762
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 113/256 (44%), Gaps = 39/256 (15%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFY--SKNTLTLSPKVVNDIH 206
++T GG G+N +R +V ++ + + GY+G + + + V+ +
Sbjct: 20 VLTSGGDAQGMNAAVRAVV--RVGIFTGARVFFVHEGYQGLVDGGDHIREATWESVSMML 77
Query: 207 KRGGTILRTSRGG-----HDTNKIVDNIEDRGINQVYIIGGDGTQKGA------------ 249
+ GGT++ ++R + N+ RGI + +IGGDG+ GA
Sbjct: 78 QLGGTVIGSARCKDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLS 137
Query: 250 -----ALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVE 304
I E R + + G+ +IDND D + G D+A+ ++A +
Sbjct: 138 DLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTDMTIGTDSALHRITEIVDAITTTAQ 197
Query: 305 SVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFE-FIERQLKEN 363
S + ++++MGR+ G++++ +L S D IPE P P +E + R+L E
Sbjct: 198 SHQRTF-VLEVMGRHCGYLALVTSL-SCGADWVFIPECP-----PDDNWEDHLCRRLSET 250
Query: 364 GHM-----VIVVAEGA 374
+I+VAEGA
Sbjct: 251 RTRGSRLNIIIVAEGA 266
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 76/200 (38%), Gaps = 11/200 (5%)
Query: 128 HFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYR 187
H R P KS ++ G G+N +R V + + G + +L + G+
Sbjct: 390 HIRPPAP------KSGSYTVAVMNVGAPAAGMNAAVRSTV-RIGLIQG-NRVLVVHDGFE 441
Query: 188 GFYSKNTLTLSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGG-DG 244
G V +GG+ L + R +I NI I + IIGG +
Sbjct: 442 GPAKGQIEEAGWSYVGGWTGQGGSKLGSKRTLPKKSFEQISANITKFNIQGLVIIGGFEA 501
Query: 245 TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVE 304
G L+ + L + IP T+ N++ D S G DTA+ +
Sbjct: 502 YTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTICTTCDRIKQSAA 561
Query: 305 SVENGVGIVKLMGRYSGFIS 324
+ V I++ MG Y G+++
Sbjct: 562 GTKRRVFIIETMGGYCGYLA 581
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 112/265 (42%), Gaps = 30/265 (11%)
Query: 136 EKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTL 195
E+V + + + I+T GG PG+N +R + YG ++ GY G +
Sbjct: 202 EQVKSEEGKKKIAIITSGGDAPGMNAAVRAVTRA-GIFYGC-KVYACYEGYTGLVKGGDM 259
Query: 196 --TLSPKVVNDIHKRGGTILRTSRGGHDTNKI-----VDNIEDRGINQVYIIGGDGTQKG 248
L + V + GGTI+ T+R + N+ GI+ + + GGDG+ G
Sbjct: 260 LKELQWQDVRGLLSIGGTIIGTARCKEFRERWGRLQACYNMVSNGIDALVVCGGDGSLTG 319
Query: 249 AAL-----------------IYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291
A L I KE + + + G+ +IDND+ D + G +++E
Sbjct: 320 ADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCGTDSTIGAYSSLER 379
Query: 292 AQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGG 351
++ S +V++MGR+ G++ + + +A+ D IPE P
Sbjct: 380 IIELVDYIDATAASHSRAF-VVEVMGRHCGWLGLMSGIAT-GADYIFIPERPPSESNWKD 437
Query: 352 LFEFIERQLKENGH--MVIVVAEGA 374
+ + + +E G ++VAEGA
Sbjct: 438 DLKKVCLRHREKGRRKTTVIVAEGA 462
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 91/230 (39%), Gaps = 13/230 (5%)
Query: 141 KSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTL-TLSP 199
+S + I+ G +N R V L+ + + I G+ G + L+
Sbjct: 595 ESSRLNIAIIHVGAPTSALNPATR--VATLNSLAKGHRVFAIRNGFAGLIRHGAVRELNW 652
Query: 200 KVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVE 257
V D H GG+ + T+R D + + + + IIGG + +Y+
Sbjct: 653 IDVEDWHNTGGSEIGTNRSLPSDDMGTVAYYFQQYKFDGLIIIGG---FEAFTALYELDA 709
Query: 258 KRG----LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIV 313
R + + +P T+ N++ + S G DT + +A + +V
Sbjct: 710 ARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLNTLSGYCDAVKQSASASRRRTFVV 769
Query: 314 KLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN 363
++ G YSG+++ YA L + + PE+P L+ E + R +E+
Sbjct: 770 EVQGGYSGYLASYAGLITGAL-AVYTPENPINLQTVQEDIELLTRTYEED 818
>pdb|3O8O|B Chain B, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|D Chain D, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|F Chain F, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|H Chain H, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 766
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 110/259 (42%), Gaps = 41/259 (15%)
Query: 148 CIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIH- 206
++T GG PG+N+ +R IV S ++ + GY G P+ + + H
Sbjct: 7 AVMTSGGDAPGMNSNVRAIV--RSAIFKGCRAFVVMEGYEGLVRGG-----PEYIKEFHW 59
Query: 207 -------KRGGTILRTSRGGHDTNKI-----VDNIEDRGINQVYIIGGDGTQKGAAL--- 251
GGT + T+R + ++ + G++ + + GGDG+ GA L
Sbjct: 60 EDVRGWSAEGGTNIGTARCMEFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRS 119
Query: 252 --------------IYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297
I E +R + + G +IDND++ D + G +A++ +AI+
Sbjct: 120 EWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTTDATIGAYSALDRICKAID 179
Query: 298 AAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFY-LEGPGGLFEFI 356
S +V++MGR G++++ A +A+ D IPE P E + + +
Sbjct: 180 YVEATANSHSRAF-VVEVMGRNCGWLALLAGIAT-SADYIFIPEKPATSSEWQDQMCDIV 237
Query: 357 ERQLKENGH-MVIVVAEGA 374
+ ++VVAEGA
Sbjct: 238 SKHRSRGKRTTIVVVAEGA 256
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/328 (21%), Positives = 120/328 (36%), Gaps = 35/328 (10%)
Query: 72 VLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTF---VSPEDAVAQNIVIQKDSPRGVH 128
L+ + + L P P+PL +V++ V AVA+ I KD R +
Sbjct: 304 TLQGLEAVNAVLESTPDTPSPLIAVNENKIVRKPLMESVKLTKAVAEAIQ-AKDFKRAMS 362
Query: 129 FR---------------RAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYM 173
R A E K ++ IV G GIN+ + + M
Sbjct: 363 LRDTEFIEHLNNFMAINSADHNEPKLPKDKRLKIAIVNVGAPAGGINSAVYSMAT--YCM 420
Query: 174 YGVDEILGIEGGYRGFYSKNTL-TLSPKVVNDIHKRGGTILRTSR---GGHDTNKIVDNI 229
I G+ G ++ +L+ K + RGG+ + T+R D I
Sbjct: 421 SQGHRPYAIYNGWSGLARHESVRSLNWKDMLGWQSRGGSEIGTNRVTPEEADLGMIAYYF 480
Query: 230 EDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDTA 288
+ + + I+GG + + + E ++ + IP T+ N++ + S G DTA
Sbjct: 481 QKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTEYSLGSDTA 540
Query: 289 VEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG 348
+ + S +V G SG+++ YA+LA +PE LE
Sbjct: 541 LNALMEYCDVVKQSASSTRGRAFVVDCQGGNSGYLATYASLAV-GAQVSYVPEEGISLEQ 599
Query: 349 PGGLFEFIERQLKENGHMVIVVAEGAGQ 376
E++ + ++ AEG G+
Sbjct: 600 LSEDIEYLAQSFEK--------AEGRGR 619
>pdb|3HNO|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|D Chain D, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
Length = 419
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 14/115 (12%)
Query: 268 IPKTIDNDIAVIDKSFGFDT-----AVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGF 322
+PKT+DND+ + D GF + AV + + + A + S + V ++++MGR++G+
Sbjct: 139 VPKTVDNDLPITDCCPGFGSVAKYIAVSTLEASFDVASMSATSTK--VFVLEVMGRHAGW 196
Query: 323 ISMYATLAS---RDVDCC-LIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEG 373
I+ LAS R++ L PE F + ++ +K+ G+ +VV+EG
Sbjct: 197 IAAAGGLASSPEREIPVVILFPEISFDKQ---KFLAKVDSCVKKFGYCSVVVSEG 248
>pdb|3SLK|A Chain A, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
pdb|3SLK|B Chain B, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
Length = 795
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 14/26 (53%)
Query: 62 SNQKVHNDGFVLEDVPHLTNFLPDLP 87
S Q H D FVL DVP LP LP
Sbjct: 147 STQTEHPDRFVLVDVPEPAQLLPALP 172
>pdb|1VP8|A Chain A, Crystal Structure Of An AlphaBETA DOMAIN OF A PUTATIVE
PYRUVATE Kinase (Af0103) From Archaeoglobus Fulgidus Dsm
4304 At 1.30 A Resolution
Length = 201
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 21/113 (18%)
Query: 186 YRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGT 245
+ GF + T P+V ++ KRG I+R S I+ +E R I++ +GG
Sbjct: 75 HTGFVREGENTXPPEVEEELRKRGAKIVRQSH-------ILSGLE-RSISRK--LGGVSR 124
Query: 246 QKGAALIYKEVEKRGLQVAV---------AGIPKTIDNDIAVIDKSFGFDTAV 289
+ A + + GL+V V IP I+ +AV +S G DTAV
Sbjct: 125 TEAIAEALRSLFGHGLKVCVEITIXAADSGAIP--IEEVVAVGGRSRGADTAV 175
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration
Of Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 55 VVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYP 90
+V A+R+ +Q+ N L+ P N+L DLP YP
Sbjct: 1 MVNAIRTPDQRFSN----LDQYPFSPNYLDDLPGYP 32
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 55 VVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYP 90
+V A+R+ +Q+ N L+ P N+L DLP YP
Sbjct: 1 MVNAIRTPDQRFSN----LDQYPFSPNYLDDLPGYP 32
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 55 VVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYP 90
+V A+R+ +Q+ N L+ P N+L DLP YP
Sbjct: 1 MVNAIRTPDQRFSN----LDQYPFSPNYLDDLPGYP 32
>pdb|2GDZ|A Chain A, Crystal Structure Of 15-Hydroxyprostaglandin Dehydrogenase
Type1, Complexed With Nad+
Length = 267
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 55 VVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVA 114
V A+ S +K N G +E H+ + + PL + ++ ED
Sbjct: 188 VNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLI-------EDDAL 240
Query: 115 QNIVIQKDSPRGVHFRRAGPREKVYFK 141
+++ + +G+HF+ G +E +YF+
Sbjct: 241 NGAIMKITTSKGIHFQDYGSKENLYFQ 267
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced
With Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced
With Trp
Length = 310
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 55 VVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYP 90
++ A+R+ +Q+ N L+ P N+L DLP YP
Sbjct: 1 MINAIRTPDQRFSN----LDQYPFSPNYLDDLPGYP 32
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide
Ions: Studies With Halide Compounds Reveal A Halide
Binding Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide
Ions: Studies With Halide Compounds Reveal A Halide
Binding Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At
Ph 6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide
Ions: Studies With Halide Compounds Reveal A Halide
Binding Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide
Ions: Studies With Halide Compounds Reveal A Halide
Binding Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme
To Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 55 VVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYP 90
++ A+R+ +Q+ N L+ P N+L DLP YP
Sbjct: 1 MINAIRTPDQRFSN----LDQYPFSPNYLDDLPGYP 32
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 55 VVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYP 90
++ A+R+ +Q+ N L+ P N+L DLP YP
Sbjct: 1 MINAIRTPDQRFSN----LDQYPFSPNYLDDLPGYP 32
>pdb|3BIT|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain
pdb|3BIT|B Chain B, Crystal Structure Of Yeast Spt16 N-Terminal Domain
Length = 453
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 28 LNPVFHKFNFDSRNFEIKPLV-SRQNRPVVVAVRSSNQKVHNDGFVL 73
L P +KFNFD ++ P++ S + + V+ RS+N +++ +G +L
Sbjct: 243 LCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQLYGNGCIL 289
>pdb|3BIP|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain
pdb|3BIP|B Chain B, Crystal Structure Of Yeast Spt16 N-Terminal Domain
pdb|3BIQ|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain
Length = 467
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 28 LNPVFHKFNFDSRNFEIKPLV-SRQNRPVVVAVRSSNQKVHNDGFVL 73
L P +KFNFD ++ P++ S + + V+ RS+N +++ +G +L
Sbjct: 243 LCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQLYGNGCIL 289
>pdb|1XWF|A Chain A, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|B Chain B, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|C Chain C, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|D Chain D, K185n Mutated S-adenosylhomocysteine Hydrolase
Length = 431
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 356 IERQLKENGHMVIVVAEGAGQEF-VAQSMPAVDEKDASGNRLLLDIGLW 403
++R L +NGH +I++AEG A P+ ++ N+++ I LW
Sbjct: 324 VDRYLLKNGHRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELW 372
>pdb|1B3R|A Chain A, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|B Chain B, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|C Chain C, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|D Chain D, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1K0U|A Chain A, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|B Chain B, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|C Chain C, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|D Chain D, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|E Chain E, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|F Chain F, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|G Chain G, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|H Chain H, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1KY4|A Chain A, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|B Chain B, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|C Chain C, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|D Chain D, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|2H5L|A Chain A, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|B Chain B, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|C Chain C, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|D Chain D, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|E Chain E, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|F Chain F, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|G Chain G, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|H Chain H, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
Length = 431
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 356 IERQLKENGHMVIVVAEGAGQEF-VAQSMPAVDEKDASGNRLLLDIGLW 403
++R L +NGH +I++AEG A P+ ++ N+++ I LW
Sbjct: 324 VDRYLLKNGHRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELW 372
>pdb|1D4F|A Chain A, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|B Chain B, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|C Chain C, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|D Chain D, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1KY5|A Chain A, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|B Chain B, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|C Chain C, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|D Chain D, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
Length = 431
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 356 IERQLKENGHMVIVVAEGAGQEF-VAQSMPAVDEKDASGNRLLLDIGLW 403
++R L +NGH +I++AEG A P+ ++ N+++ I LW
Sbjct: 324 VDRYLLKNGHRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELW 372
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,168,780
Number of Sequences: 62578
Number of extensions: 541504
Number of successful extensions: 1378
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1315
Number of HSP's gapped (non-prelim): 41
length of query: 413
length of database: 14,973,337
effective HSP length: 101
effective length of query: 312
effective length of database: 8,652,959
effective search space: 2699723208
effective search space used: 2699723208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)