Query 015095
Match_columns 413
No_of_seqs 263 out of 1449
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 03:02:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015095.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015095hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02564 6-phosphofructokinase 100.0 1E-97 2E-102 771.6 32.2 354 49-412 2-355 (484)
2 PRK06830 diphosphate--fructose 100.0 5.2E-89 1.1E-93 703.2 30.1 323 86-413 17-348 (443)
3 PTZ00286 6-phospho-1-fructokin 100.0 3.4E-88 7.4E-93 700.2 30.1 336 73-413 4-351 (459)
4 PLN02884 6-phosphofructokinase 100.0 5.8E-82 1.3E-86 646.6 30.0 301 106-412 2-318 (411)
5 cd00764 Eukaryotic_PFK Phospho 100.0 2.2E-73 4.8E-78 617.0 23.2 327 69-399 302-655 (762)
6 PRK06555 pyrophosphate--fructo 100.0 2.7E-71 5.9E-76 564.8 28.3 266 145-413 4-313 (403)
7 PRK14072 6-phosphofructokinase 100.0 9.7E-71 2.1E-75 565.7 27.8 261 145-412 4-285 (416)
8 TIGR02483 PFK_mixed phosphofru 100.0 1.6E-70 3.5E-75 548.2 27.1 254 146-412 1-262 (324)
9 PRK14071 6-phosphofructokinase 100.0 8.7E-70 1.9E-74 549.8 27.2 254 144-412 4-273 (360)
10 TIGR02478 6PF1K_euk 6-phosphof 100.0 1.5E-70 3.2E-75 596.4 22.6 326 70-399 300-656 (745)
11 TIGR02477 PFKA_PPi diphosphate 100.0 3.2E-68 7E-73 560.3 28.8 323 80-412 6-392 (539)
12 cd00363 PFK Phosphofructokinas 100.0 1.8E-67 3.8E-72 529.2 27.6 228 145-376 1-234 (338)
13 PRK07085 diphosphate--fructose 100.0 3E-67 6.4E-72 554.2 27.9 322 79-412 10-401 (555)
14 cd00765 Pyrophosphate_PFK Phos 100.0 4.1E-67 8.9E-72 551.8 27.9 323 80-412 11-404 (550)
15 TIGR02482 PFKA_ATP 6-phosphofr 100.0 1.7E-67 3.7E-72 521.6 23.4 242 146-399 1-255 (301)
16 PLN03028 pyrophosphate--fructo 100.0 3.4E-66 7.3E-71 549.7 29.4 287 125-412 57-400 (610)
17 cd00763 Bacterial_PFK Phosphof 100.0 2.4E-66 5.1E-71 516.8 24.3 217 146-375 2-224 (317)
18 PRK03202 6-phosphofructokinase 100.0 1.1E-65 2.5E-70 512.5 23.6 242 145-399 2-254 (320)
19 PF00365 PFK: Phosphofructokin 100.0 7E-66 1.5E-70 506.3 20.0 244 145-400 1-260 (282)
20 PLN02251 pyrophosphate-depende 100.0 8E-65 1.7E-69 535.6 29.1 322 79-412 36-419 (568)
21 COG0205 PfkA 6-phosphofructoki 100.0 1.1E-64 2.3E-69 508.3 24.0 224 144-377 2-232 (347)
22 PTZ00468 phosphofructokinase f 100.0 8.1E-63 1.8E-67 548.3 27.3 322 80-412 39-423 (1328)
23 cd00764 Eukaryotic_PFK Phospho 100.0 1.3E-62 2.7E-67 533.2 23.5 229 143-375 2-255 (762)
24 TIGR02478 6PF1K_euk 6-phosphof 100.0 4.8E-62 1E-66 530.0 27.7 226 145-374 1-251 (745)
25 PTZ00287 6-phosphofructokinase 100.0 2.7E-61 6E-66 539.2 30.4 233 143-376 176-421 (1419)
26 PTZ00287 6-phosphofructokinase 100.0 2.9E-55 6.3E-60 490.9 24.6 230 142-375 834-1077(1419)
27 PTZ00468 phosphofructokinase f 100.0 5.6E-47 1.2E-51 422.1 24.1 229 143-376 674-965 (1328)
28 KOG2440 Pyrophosphate-dependen 100.0 5E-44 1.1E-48 378.9 4.6 344 69-412 43-440 (666)
29 KOG2440 Pyrophosphate-dependen 100.0 5.4E-42 1.2E-46 363.5 11.5 320 69-399 289-639 (666)
30 PRK04761 ppnK inorganic polyph 91.9 0.48 1E-05 46.6 7.0 59 227-300 13-80 (246)
31 PRK14077 pnk inorganic polypho 91.7 0.55 1.2E-05 47.1 7.3 54 233-301 64-119 (287)
32 PRK04885 ppnK inorganic polyph 91.6 0.56 1.2E-05 46.5 7.2 56 233-301 35-92 (265)
33 PRK03501 ppnK inorganic polyph 90.9 0.69 1.5E-05 45.9 7.1 55 233-301 39-96 (264)
34 PRK00561 ppnK inorganic polyph 90.4 0.41 8.9E-06 47.4 4.9 62 223-299 18-87 (259)
35 PRK14075 pnk inorganic polypho 89.0 1.2 2.6E-05 43.8 7.0 52 232-301 40-93 (256)
36 PRK01911 ppnK inorganic polyph 88.9 0.8 1.7E-05 46.0 5.8 55 233-302 64-120 (292)
37 PLN02929 NADH kinase 88.6 0.82 1.8E-05 46.3 5.6 64 232-301 63-136 (301)
38 PRK03372 ppnK inorganic polyph 88.4 0.67 1.5E-05 46.9 4.9 55 233-302 72-128 (306)
39 PRK02649 ppnK inorganic polyph 87.9 0.9 1.9E-05 46.0 5.4 53 233-300 68-122 (305)
40 PRK04539 ppnK inorganic polyph 87.9 0.92 2E-05 45.7 5.5 54 233-301 68-123 (296)
41 TIGR01918 various_sel_PB selen 87.8 1.4 3.1E-05 46.5 6.9 119 143-263 222-367 (431)
42 PF01513 NAD_kinase: ATP-NAD k 87.6 0.33 7.2E-06 48.1 2.1 63 224-301 67-131 (285)
43 PRK03378 ppnK inorganic polyph 87.4 1.2 2.7E-05 44.7 6.1 53 233-300 63-117 (292)
44 PLN02935 Bifunctional NADH kin 85.4 1.4 3.1E-05 47.5 5.6 53 233-300 262-316 (508)
45 COG3199 Predicted inorganic po 85.4 0.94 2E-05 46.6 4.0 51 220-276 87-137 (355)
46 PRK13055 putative lipid kinase 85.1 2.9 6.4E-05 42.3 7.5 60 215-277 41-100 (334)
47 PRK11914 diacylglycerol kinase 84.9 1.7 3.7E-05 43.1 5.6 70 219-296 50-120 (306)
48 PRK01231 ppnK inorganic polyph 84.8 1.6 3.6E-05 43.8 5.4 54 233-301 62-117 (295)
49 PRK13337 putative lipid kinase 84.4 5.2 0.00011 39.7 8.8 90 219-320 43-132 (304)
50 PF00532 Peripla_BP_1: Peripla 84.1 7.1 0.00015 38.2 9.5 140 212-371 35-188 (279)
51 PRK13054 lipid kinase; Reviewe 84.0 5 0.00011 39.8 8.4 90 217-318 40-131 (300)
52 TIGR03702 lip_kinase_YegS lipi 82.8 6.7 0.00014 38.8 8.8 62 215-277 34-95 (293)
53 PRK02645 ppnK inorganic polyph 82.4 1.8 3.8E-05 43.7 4.5 55 233-301 57-114 (305)
54 TIGR01917 gly_red_sel_B glycin 82.3 5 0.00011 42.6 7.9 122 143-266 222-370 (431)
55 PLN02958 diacylglycerol kinase 81.9 9.6 0.00021 40.9 10.1 98 177-278 112-215 (481)
56 PRK03708 ppnK inorganic polyph 81.1 2.2 4.8E-05 42.5 4.7 53 232-300 56-110 (277)
57 cd01537 PBP1_Repressors_Sugar_ 80.2 46 0.001 30.2 16.0 127 146-316 1-127 (264)
58 PRK02155 ppnK NAD(+)/NADH kina 79.9 3.3 7.2E-05 41.5 5.5 53 233-300 63-117 (291)
59 PRK02231 ppnK inorganic polyph 79.8 1.8 3.8E-05 43.2 3.5 51 233-298 42-94 (272)
60 PRK13059 putative lipid kinase 77.9 8.1 0.00018 38.3 7.5 62 228-295 51-112 (295)
61 COG0061 nadF NAD kinase [Coenz 77.8 4.4 9.5E-05 40.3 5.6 55 232-301 54-110 (281)
62 PRK06186 hypothetical protein; 77.3 4.4 9.6E-05 39.5 5.3 58 233-306 53-112 (229)
63 PLN02727 NAD kinase 77.3 3.6 7.9E-05 47.4 5.3 53 233-300 743-797 (986)
64 PRK00861 putative lipid kinase 76.4 5.6 0.00012 39.4 5.9 68 219-294 43-110 (300)
65 PRK14076 pnk inorganic polypho 76.4 4.5 9.8E-05 44.2 5.7 53 233-300 348-402 (569)
66 PRK01185 ppnK inorganic polyph 76.4 5.3 0.00012 39.8 5.7 51 233-301 52-104 (271)
67 COG1570 XseA Exonuclease VII, 75.6 10 0.00022 40.5 7.8 96 140-267 131-230 (440)
68 cd08180 PDD 1,3-propanediol de 75.4 5.5 0.00012 40.2 5.6 56 220-275 65-122 (332)
69 PRK13057 putative lipid kinase 75.3 7.7 0.00017 38.2 6.5 65 220-293 38-102 (287)
70 PF00465 Fe-ADH: Iron-containi 75.1 3.9 8.5E-05 41.7 4.5 57 220-276 65-135 (366)
71 COG1597 LCB5 Sphingosine kinas 74.8 14 0.00029 37.2 8.2 108 178-297 4-116 (301)
72 TIGR00147 lipid kinase, YegS/R 74.5 6.6 0.00014 38.5 5.8 52 223-277 47-98 (293)
73 cd08173 Gro1PDH Sn-glycerol-1- 73.8 6.2 0.00014 39.9 5.6 53 220-277 65-117 (339)
74 cd08172 GlyDH-like1 Glycerol d 73.5 5.3 0.00012 40.6 5.0 52 220-276 63-114 (347)
75 COG1609 PurR Transcriptional r 72.5 23 0.0005 35.8 9.3 171 146-372 60-246 (333)
76 cd08551 Fe-ADH iron-containing 72.1 7.7 0.00017 39.6 5.8 56 220-275 67-135 (370)
77 PF00781 DAGK_cat: Diacylglyce 71.2 3.3 7.1E-05 35.8 2.5 65 221-291 41-108 (130)
78 cd08170 GlyDH Glycerol dehydro 70.9 7.6 0.00017 39.4 5.5 52 220-276 64-115 (351)
79 PF02601 Exonuc_VII_L: Exonucl 70.6 38 0.00082 33.9 10.3 117 140-291 10-139 (319)
80 PRK00843 egsA NAD(P)-dependent 70.1 8.4 0.00018 39.3 5.6 52 220-276 74-125 (350)
81 PRK12361 hypothetical protein; 69.9 13 0.00027 40.3 7.1 60 219-286 283-343 (547)
82 cd07766 DHQ_Fe-ADH Dehydroquin 69.5 8.2 0.00018 38.7 5.3 53 220-275 65-117 (332)
83 cd08177 MAR Maleylacetate redu 69.4 9.4 0.0002 38.6 5.7 51 220-275 64-114 (337)
84 cd08195 DHQS Dehydroquinate sy 69.3 5.5 0.00012 40.5 4.0 65 220-290 69-136 (345)
85 TIGR00288 conserved hypothetic 68.3 63 0.0014 30.0 10.3 52 217-271 86-140 (160)
86 cd08186 Fe-ADH8 Iron-containin 68.2 11 0.00024 38.9 6.0 52 220-271 71-136 (383)
87 cd08189 Fe-ADH5 Iron-containin 67.9 13 0.00029 38.2 6.5 53 220-272 70-136 (374)
88 cd08199 EEVS 2-epi-5-epi-valio 67.2 7 0.00015 40.2 4.3 66 220-291 71-140 (354)
89 PRK00002 aroB 3-dehydroquinate 66.5 7.9 0.00017 39.6 4.5 50 220-272 76-128 (358)
90 PRK10014 DNA-binding transcrip 66.4 1.3E+02 0.0029 29.3 14.6 86 145-268 65-150 (342)
91 cd08194 Fe-ADH6 Iron-containin 65.7 13 0.00028 38.2 5.9 53 220-272 67-132 (375)
92 cd08179 NADPH_BDH NADPH-depend 65.1 14 0.00031 37.9 6.1 53 220-272 68-136 (375)
93 TIGR01357 aroB 3-dehydroquinat 64.8 13 0.00028 37.7 5.7 50 220-272 65-117 (344)
94 cd03822 GT1_ecORF704_like This 63.9 85 0.0018 29.9 10.9 84 146-242 1-85 (366)
95 cd08181 PPD-like 1,3-propanedi 63.7 15 0.00033 37.5 6.0 53 220-272 70-134 (357)
96 TIGR02638 lactal_redase lactal 63.6 15 0.00032 37.9 5.9 56 220-275 73-143 (379)
97 cd06321 PBP1_ABC_sugar_binding 62.8 1.3E+02 0.0029 28.0 19.8 127 146-314 1-128 (271)
98 PRK15454 ethanol dehydrogenase 62.8 15 0.00033 38.3 5.8 53 220-272 93-158 (395)
99 cd08182 HEPD Hydroxyethylphosp 62.5 15 0.00033 37.5 5.7 54 220-273 64-134 (367)
100 PRK09423 gldA glycerol dehydro 62.2 15 0.00033 37.6 5.6 51 221-276 72-122 (366)
101 PLN02834 3-dehydroquinate synt 61.9 9.6 0.00021 40.4 4.2 63 220-288 147-212 (433)
102 cd08550 GlyDH-like Glycerol_de 61.9 14 0.00031 37.5 5.3 53 220-277 64-116 (349)
103 cd08178 AAD_C C-terminal alcoh 61.8 20 0.00042 37.3 6.4 34 220-253 65-98 (398)
104 PRK15138 aldehyde reductase; P 61.5 15 0.00032 38.2 5.4 52 220-271 72-139 (387)
105 cd08193 HVD 5-hydroxyvalerate 61.1 17 0.00036 37.4 5.8 53 220-272 70-135 (376)
106 cd08196 DHQS-like1 Dehydroquin 61.0 11 0.00025 38.7 4.5 66 220-291 60-128 (346)
107 cd06533 Glyco_transf_WecG_TagA 60.3 41 0.00089 30.8 7.6 87 144-242 46-133 (171)
108 cd08185 Fe-ADH1 Iron-containin 60.2 16 0.00035 37.6 5.4 54 220-273 70-141 (380)
109 PRK10586 putative oxidoreducta 60.0 12 0.00027 38.5 4.5 55 221-281 75-129 (362)
110 cd06273 PBP1_GntR_like_1 This 59.5 1.3E+02 0.0028 27.9 11.0 41 222-268 44-84 (268)
111 PRK09860 putative alcohol dehy 59.1 22 0.00048 36.8 6.2 53 220-272 75-140 (383)
112 PRK10624 L-1,2-propanediol oxi 58.2 18 0.0004 37.3 5.5 54 220-273 74-142 (382)
113 cd08176 LPO Lactadehyde:propan 58.2 22 0.00049 36.5 6.1 55 220-274 72-139 (377)
114 cd08197 DOIS 2-deoxy-scyllo-in 57.8 17 0.00038 37.4 5.2 64 220-289 68-134 (355)
115 cd06320 PBP1_allose_binding Pe 57.6 1.7E+02 0.0036 27.4 13.0 47 222-272 46-92 (275)
116 cd07995 TPK Thiamine pyrophosp 57.3 1.2E+02 0.0025 28.6 10.3 91 148-245 1-102 (208)
117 cd08171 GlyDH-like2 Glycerol d 56.9 20 0.00043 36.4 5.4 50 220-274 65-114 (345)
118 PRK00286 xseA exodeoxyribonucl 55.9 93 0.002 32.7 10.3 117 140-291 131-256 (438)
119 PRK05637 anthranilate synthase 55.5 30 0.00066 32.9 6.1 53 227-292 38-90 (208)
120 TIGR00237 xseA exodeoxyribonuc 55.5 1E+02 0.0022 32.6 10.6 118 140-292 125-252 (432)
121 cd08184 Fe-ADH3 Iron-containin 55.1 30 0.00065 35.5 6.4 52 221-272 66-133 (347)
122 cd08198 DHQS-like2 Dehydroquin 55.0 19 0.00042 37.5 5.0 64 222-291 85-151 (369)
123 COG0206 FtsZ Cell division GTP 54.7 28 0.00061 35.9 6.1 207 142-374 9-231 (338)
124 cd08192 Fe-ADH7 Iron-containin 53.9 29 0.00062 35.5 6.0 54 220-273 68-138 (370)
125 TIGR00566 trpG_papA glutamine 53.4 25 0.00055 32.6 5.1 52 227-291 37-88 (188)
126 cd08183 Fe-ADH2 Iron-containin 53.1 27 0.00058 35.9 5.6 52 220-271 62-130 (374)
127 PRK10703 DNA-binding transcrip 52.9 2.3E+02 0.005 27.7 14.6 69 145-246 60-128 (341)
128 cd08187 BDH Butanol dehydrogen 52.7 27 0.00058 36.0 5.6 55 220-274 73-140 (382)
129 PRK13951 bifunctional shikimat 52.7 14 0.00031 39.7 3.8 135 149-292 140-290 (488)
130 COG0504 PyrG CTP synthase (UTP 52.3 27 0.00058 37.9 5.6 72 234-321 344-421 (533)
131 cd06297 PBP1_LacI_like_12 Liga 52.2 1.2E+02 0.0027 28.5 9.7 42 221-268 42-84 (269)
132 cd01391 Periplasmic_Binding_Pr 51.4 1.8E+02 0.0038 25.9 13.5 138 220-372 45-191 (269)
133 PF07905 PucR: Purine cataboli 51.3 54 0.0012 28.3 6.5 71 197-270 31-107 (123)
134 cd06302 PBP1_LsrB_Quorum_Sensi 51.2 2.3E+02 0.0051 27.2 14.7 86 146-268 1-87 (298)
135 COG1454 EutG Alcohol dehydroge 50.7 32 0.0007 36.0 5.8 52 221-272 74-138 (377)
136 smart00046 DAGKc Diacylglycero 50.1 15 0.00033 31.7 2.9 42 233-277 49-93 (124)
137 cd08191 HHD 6-hydroxyhexanoate 50.1 33 0.00072 35.4 5.8 51 221-271 67-130 (386)
138 cd08549 G1PDH_related Glycerol 50.0 28 0.00061 35.2 5.2 49 221-275 69-117 (332)
139 PRK15458 tagatose 6-phosphate 50.0 1.6E+02 0.0035 31.5 10.8 139 146-313 16-172 (426)
140 PF02645 DegV: Uncharacterised 49.8 75 0.0016 31.3 8.1 124 195-330 40-183 (280)
141 cd06298 PBP1_CcpA_like Ligand- 49.6 2.1E+02 0.0047 26.3 11.3 77 222-314 44-123 (268)
142 cd08188 Fe-ADH4 Iron-containin 49.6 40 0.00086 34.8 6.3 52 221-272 73-137 (377)
143 TIGR03405 Phn_Fe-ADH phosphona 49.3 37 0.00079 34.8 5.9 53 220-272 65-136 (355)
144 COG0371 GldA Glycerol dehydrog 49.0 26 0.00057 36.5 4.8 56 220-280 71-126 (360)
145 COG0041 PurE Phosphoribosylcar 49.0 44 0.00095 31.1 5.7 9 262-270 80-88 (162)
146 cd06349 PBP1_ABC_ligand_bindin 48.8 85 0.0018 30.8 8.3 106 156-269 115-223 (340)
147 PRK02261 methylaspartate mutas 48.7 1E+02 0.0022 27.5 7.9 102 145-261 4-113 (137)
148 cd08174 G1PDH-like Glycerol-1- 48.3 41 0.00089 33.9 6.1 55 220-279 61-116 (331)
149 cd06278 PBP1_LacI_like_2 Ligan 48.0 1.5E+02 0.0033 27.3 9.4 42 221-268 42-83 (266)
150 PRK05670 anthranilate synthase 47.9 32 0.0007 31.7 4.8 50 229-291 39-88 (189)
151 CHL00101 trpG anthranilate syn 47.5 35 0.00077 31.6 5.1 49 229-290 39-87 (190)
152 cd03409 Chelatase_Class_II Cla 46.8 1.5E+02 0.0033 23.8 8.5 77 148-256 3-87 (101)
153 cd08190 HOT Hydroxyacid-oxoaci 46.6 40 0.00087 35.3 5.8 52 220-271 67-137 (414)
154 PRK10355 xylF D-xylose transpo 46.5 2.9E+02 0.0063 27.5 11.8 93 143-273 24-117 (330)
155 PF04263 TPK_catalytic: Thiami 45.8 92 0.002 27.3 7.1 85 178-263 18-118 (123)
156 PF05036 SPOR: Sporulation rel 45.3 36 0.00078 25.7 4.0 50 213-262 9-71 (76)
157 cd08175 G1PDH Glycerol-1-phosp 45.2 31 0.00067 35.0 4.6 47 221-273 69-115 (348)
158 TIGR00640 acid_CoA_mut_C methy 45.0 2.1E+02 0.0045 25.4 9.3 45 201-245 45-94 (132)
159 TIGR02810 agaZ_gatZ D-tagatose 45.0 2.2E+02 0.0047 30.5 10.8 139 146-313 12-168 (420)
160 PRK03692 putative UDP-N-acetyl 44.6 89 0.0019 30.7 7.6 86 144-242 105-191 (243)
161 cd06274 PBP1_FruR Ligand bindi 44.5 2.6E+02 0.0057 25.9 11.3 42 221-268 43-84 (264)
162 PLN02335 anthranilate synthase 44.4 38 0.00082 32.5 4.9 48 229-289 58-105 (222)
163 PF03808 Glyco_tran_WecB: Glyc 44.2 1.3E+02 0.0027 27.6 8.1 37 145-187 49-85 (172)
164 PRK06203 aroB 3-dehydroquinate 44.0 43 0.00094 35.0 5.6 47 222-271 97-146 (389)
165 COG4981 Enoyl reductase domain 43.6 2.1E+02 0.0045 31.9 10.5 96 223-341 111-219 (717)
166 PRK14462 ribosomal RNA large s 43.5 2.4E+02 0.0053 29.3 10.9 162 148-325 163-349 (356)
167 cd02071 MM_CoA_mut_B12_BD meth 43.2 1.6E+02 0.0035 25.2 8.2 44 202-245 43-91 (122)
168 cd01538 PBP1_ABC_xylose_bindin 43.1 3E+02 0.0066 26.2 13.8 43 222-268 44-86 (288)
169 TIGR01162 purE phosphoribosyla 42.8 35 0.00077 31.5 4.1 54 213-272 33-86 (156)
170 cd08169 DHQ-like Dehydroquinat 42.6 34 0.00073 35.0 4.4 64 221-290 68-134 (344)
171 PF10126 Nit_Regul_Hom: Unchar 42.1 75 0.0016 27.8 5.7 75 184-270 26-102 (110)
172 PF00289 CPSase_L_chain: Carba 42.0 40 0.00086 29.0 4.2 45 220-268 61-105 (110)
173 cd06299 PBP1_LacI_like_13 Liga 41.8 2.8E+02 0.0062 25.5 15.7 84 146-268 1-84 (265)
174 cd06295 PBP1_CelR Ligand bindi 41.7 2.7E+02 0.0058 26.0 10.2 43 222-270 53-95 (275)
175 cd06317 PBP1_ABC_sugar_binding 41.3 2.9E+02 0.0064 25.5 12.2 22 223-244 46-67 (275)
176 cd06313 PBP1_ABC_sugar_binding 41.3 3.1E+02 0.0068 25.8 13.0 134 222-372 44-192 (272)
177 PRK15052 D-tagatose-1,6-bispho 41.1 2.7E+02 0.0059 29.8 10.8 139 146-313 13-168 (421)
178 cd06167 LabA_like LabA_like pr 40.5 57 0.0012 28.3 5.0 43 224-269 90-132 (149)
179 cd06294 PBP1_ycjW_transcriptio 40.5 2.6E+02 0.0056 25.8 9.8 40 223-268 50-89 (270)
180 cd06281 PBP1_LacI_like_5 Ligan 40.1 3.1E+02 0.0068 25.5 10.8 89 147-273 2-90 (269)
181 PF04405 ScdA_N: Domain of Unk 39.9 28 0.0006 26.7 2.5 27 222-250 12-38 (56)
182 PRK15395 methyl-galactoside AB 39.6 3.9E+02 0.0084 26.4 17.1 91 142-269 22-113 (330)
183 TIGR03822 AblA_like_2 lysine-2 38.5 4.3E+02 0.0094 26.7 15.2 160 149-319 140-310 (321)
184 cd01977 Nitrogenase_VFe_alpha 38.0 3.9E+02 0.0084 27.9 11.5 149 223-412 77-232 (415)
185 cd06283 PBP1_RegR_EndR_KdgR_li 37.8 3.2E+02 0.007 25.0 11.1 77 223-313 45-122 (267)
186 smart00481 POLIIIAc DNA polyme 37.5 1.2E+02 0.0027 22.8 5.9 51 220-272 15-65 (67)
187 cd01972 Nitrogenase_VnfE_like 37.4 3.9E+02 0.0085 27.9 11.5 152 223-412 79-236 (426)
188 PRK10423 transcriptional repre 36.6 2.8E+02 0.0061 26.8 9.7 67 145-245 57-124 (327)
189 TIGR00696 wecB_tagA_cpsF bacte 36.6 1.6E+02 0.0034 27.5 7.5 85 145-242 49-134 (177)
190 TIGR01481 ccpA catabolite cont 36.3 2.7E+02 0.0058 27.0 9.6 40 223-268 105-144 (329)
191 TIGR03134 malonate_gamma malon 36.3 1.6E+02 0.0036 28.8 7.9 99 239-350 44-147 (238)
192 KOG0066 eIF2-interacting prote 36.2 1.3E+02 0.0028 32.9 7.5 87 284-373 665-760 (807)
193 PRK06774 para-aminobenzoate sy 36.1 42 0.00092 31.0 3.7 50 227-289 37-86 (191)
194 PLN02204 diacylglycerol kinase 35.5 58 0.0013 36.3 5.1 70 177-250 160-235 (601)
195 cd06335 PBP1_ABC_ligand_bindin 35.5 3.2E+02 0.007 27.0 10.1 62 204-268 161-225 (347)
196 PRK01045 ispH 4-hydroxy-3-meth 35.3 1.1E+02 0.0024 31.1 6.7 78 221-300 199-280 (298)
197 PRK15404 leucine ABC transport 35.2 3E+02 0.0065 27.9 10.0 64 202-268 182-248 (369)
198 PF00710 Asparaginase: Asparag 35.2 2.5E+02 0.0055 28.3 9.3 60 220-280 57-118 (313)
199 cd00537 MTHFR Methylenetetrahy 34.9 49 0.0011 32.4 4.1 88 178-269 30-137 (274)
200 PRK14021 bifunctional shikimat 34.9 39 0.00085 36.8 3.7 62 222-289 255-319 (542)
201 TIGR01501 MthylAspMutase methy 34.8 2.3E+02 0.0049 25.4 7.9 45 201-245 44-93 (134)
202 PF01936 NYN: NYN domain; Int 34.8 36 0.00077 29.1 2.8 44 225-271 87-130 (146)
203 cd06347 PBP1_ABC_ligand_bindin 34.2 2.6E+02 0.0057 26.9 9.1 61 205-268 160-223 (334)
204 PF04208 MtrA: Tetrahydrometha 34.0 95 0.0021 29.3 5.5 55 206-261 38-95 (176)
205 PRK04011 peptide chain release 33.8 2.3E+02 0.0049 30.0 9.0 53 321-373 300-389 (411)
206 PRK13805 bifunctional acetalde 33.7 81 0.0017 36.3 6.1 33 221-253 527-559 (862)
207 cd06304 PBP1_BmpA_like Peripla 33.7 4E+02 0.0087 24.9 12.1 23 221-243 44-66 (260)
208 cd01542 PBP1_TreR_like Ligand- 33.7 3.8E+02 0.0082 24.6 11.0 82 147-268 2-84 (259)
209 PF00731 AIRC: AIR carboxylase 33.6 31 0.00068 31.6 2.3 49 216-270 38-86 (150)
210 cd06342 PBP1_ABC_LIVBP_like Ty 33.2 4E+02 0.0086 25.7 10.2 102 159-269 118-223 (334)
211 PLN02821 1-hydroxy-2-methyl-2- 33.2 87 0.0019 33.8 5.8 52 221-273 350-401 (460)
212 COG1122 CbiO ABC-type cobalt t 33.1 1.3E+02 0.0028 29.4 6.6 99 270-371 95-196 (235)
213 cd01743 GATase1_Anthranilate_S 33.1 64 0.0014 29.4 4.3 48 231-291 40-87 (184)
214 PF09651 Cas_APE2256: CRISPR-a 33.0 1.3E+02 0.0029 26.7 6.2 110 223-342 8-126 (136)
215 PF13727 CoA_binding_3: CoA-bi 33.0 78 0.0017 27.6 4.7 47 221-269 129-175 (175)
216 COG2086 FixA Electron transfer 33.0 4.9E+02 0.011 26.0 10.7 114 269-408 21-137 (260)
217 TIGR00262 trpA tryptophan synt 32.9 66 0.0014 31.7 4.6 49 221-271 103-151 (256)
218 COG0414 PanC Panthothenate syn 32.7 66 0.0014 32.5 4.5 34 303-337 17-51 (285)
219 TIGR01284 alt_nitrog_alph nitr 32.4 5.6E+02 0.012 27.3 11.8 152 222-413 113-270 (457)
220 cd01539 PBP1_GGBP Periplasmic 32.1 4.7E+02 0.01 25.2 14.3 43 222-268 46-88 (303)
221 TIGR00215 lpxB lipid-A-disacch 32.0 96 0.0021 31.9 5.9 105 146-262 7-115 (385)
222 cd00316 Oxidoreductase_nitroge 31.9 4.4E+02 0.0096 26.7 10.6 150 222-412 69-223 (399)
223 PF13458 Peripla_BP_6: Peripla 31.8 3.8E+02 0.0082 25.9 9.8 111 156-274 115-229 (343)
224 cd02991 UAS_ETEA UAS family, E 31.8 1.3E+02 0.0028 26.0 5.8 66 223-294 43-108 (116)
225 cd06326 PBP1_STKc_like Type I 31.7 4.2E+02 0.0091 25.6 10.1 105 157-271 118-226 (336)
226 TIGR01861 ANFD nitrogenase iro 31.6 1.4E+02 0.0031 32.5 7.3 40 212-251 207-246 (513)
227 PRK05096 guanosine 5'-monophos 31.3 2.4E+02 0.0052 29.4 8.4 103 221-340 137-242 (346)
228 PRK04155 chaperone protein Hch 31.3 5.6E+02 0.012 25.8 11.4 40 222-261 134-181 (287)
229 PRK09435 membrane ATPase/prote 31.2 5.1E+02 0.011 26.6 10.9 31 308-343 149-179 (332)
230 PRK06843 inosine 5-monophospha 31.0 6.7E+02 0.015 26.7 12.1 101 220-339 179-284 (404)
231 PF13685 Fe-ADH_2: Iron-contai 31.0 39 0.00084 33.3 2.6 51 221-276 63-113 (250)
232 PRK02910 light-independent pro 30.9 6.3E+02 0.014 27.4 12.1 158 221-412 72-232 (519)
233 cd04234 AAK_AK AAK_AK: Amino A 30.7 3.2E+02 0.007 25.9 8.9 37 206-245 4-42 (227)
234 cd06329 PBP1_SBP_like_3 Peripl 30.5 3.5E+02 0.0076 26.6 9.4 64 203-269 165-234 (342)
235 cd06293 PBP1_LacI_like_11 Liga 30.1 4.5E+02 0.0098 24.3 11.0 91 222-327 44-143 (269)
236 cd06268 PBP1_ABC_transporter_L 30.0 4.4E+02 0.0095 24.2 10.0 63 205-270 159-224 (298)
237 TIGR01285 nifN nitrogenase mol 30.0 4.9E+02 0.011 27.5 10.8 67 223-294 81-154 (432)
238 CHL00200 trpA tryptophan synth 29.9 5.2E+02 0.011 25.6 10.4 129 222-371 4-152 (263)
239 KOG1116 Sphingosine kinase, in 28.8 30 0.00064 38.2 1.5 109 221-335 224-337 (579)
240 PRK10247 putative ABC transpor 28.7 1.1E+02 0.0024 28.7 5.2 59 313-372 136-196 (225)
241 PRK12767 carbamoyl phosphate s 28.7 4.8E+02 0.01 25.5 10.0 19 221-239 57-75 (326)
242 PF00117 GATase: Glutamine ami 28.5 51 0.0011 30.0 2.8 50 230-294 39-91 (192)
243 TIGR02826 RNR_activ_nrdG3 anae 28.4 1.4E+02 0.0031 26.9 5.6 42 221-263 47-91 (147)
244 PRK13210 putative L-xylulose 5 28.3 4E+02 0.0087 25.5 9.2 32 286-318 125-156 (284)
245 PRK13293 F420-0--gamma-glutamy 28.1 1.4E+02 0.0031 29.6 5.9 93 307-409 89-199 (245)
246 PRK06895 putative anthranilate 28.1 1.1E+02 0.0024 28.2 5.0 46 233-291 43-88 (190)
247 PRK05660 HemN family oxidoredu 27.7 53 0.0012 33.9 3.1 65 232-296 57-136 (378)
248 cd01744 GATase1_CPSase Small c 27.7 1.2E+02 0.0025 27.7 5.1 49 229-292 35-86 (178)
249 cd06334 PBP1_ABC_ligand_bindin 27.6 6.3E+02 0.014 25.3 11.4 104 157-268 117-227 (351)
250 PRK07765 para-aminobenzoate sy 27.5 1E+02 0.0022 29.3 4.8 46 232-292 45-93 (214)
251 cd06337 PBP1_ABC_ligand_bindin 27.4 1.8E+02 0.0039 29.0 6.8 63 204-269 171-236 (357)
252 cd01965 Nitrogenase_MoFe_beta_ 27.3 5.4E+02 0.012 26.8 10.6 70 223-296 71-146 (428)
253 PF13528 Glyco_trans_1_3: Glyc 27.3 3.4E+02 0.0074 26.2 8.6 116 233-377 192-308 (318)
254 PRK13111 trpA tryptophan synth 27.0 1.6E+02 0.0034 29.1 6.1 48 221-270 105-152 (258)
255 TIGR00732 dprA DNA protecting 27.0 5.7E+02 0.012 24.5 11.1 103 150-274 77-193 (220)
256 PRK08007 para-aminobenzoate sy 26.9 82 0.0018 29.2 3.9 77 197-291 11-88 (187)
257 PF04122 CW_binding_2: Putativ 26.6 1.3E+02 0.0029 24.3 4.7 38 208-247 49-86 (92)
258 PRK10771 thiQ thiamine transpo 26.6 1.2E+02 0.0027 28.4 5.2 58 314-372 129-188 (232)
259 PRK11629 lolD lipoprotein tran 26.5 1.2E+02 0.0027 28.4 5.2 51 322-373 153-205 (233)
260 KOG4435 Predicted lipid kinase 26.3 99 0.0021 33.1 4.7 49 222-273 106-154 (535)
261 cd06346 PBP1_ABC_ligand_bindin 26.3 2.4E+02 0.0051 27.4 7.2 62 203-267 159-223 (312)
262 PRK15447 putative protease; Pr 26.2 1.1E+02 0.0023 30.8 4.9 46 322-368 17-65 (301)
263 PRK05261 putative phosphoketol 26.1 1.1E+03 0.023 27.5 13.3 50 140-190 39-90 (785)
264 TIGR00216 ispH_lytB (E)-4-hydr 26.1 2.4E+02 0.0052 28.4 7.3 52 220-273 196-247 (280)
265 TIGR02634 xylF D-xylose ABC tr 26.1 6.1E+02 0.013 24.5 14.5 43 222-268 43-85 (302)
266 TIGR00676 fadh2 5,10-methylene 25.4 94 0.002 30.7 4.2 56 215-270 66-135 (272)
267 cd02067 B12-binding B12 bindin 25.3 3.5E+02 0.0076 22.6 7.3 24 222-245 67-91 (119)
268 cd03238 ABC_UvrA The excision 25.2 1.2E+02 0.0027 27.9 4.7 58 313-372 86-147 (176)
269 cd06315 PBP1_ABC_sugar_binding 25.0 5.2E+02 0.011 24.5 9.2 65 146-244 2-67 (280)
270 PF02844 GARS_N: Phosphoribosy 25.0 74 0.0016 27.2 3.0 90 145-268 1-92 (100)
271 PRK12360 4-hydroxy-3-methylbut 24.8 2.1E+02 0.0045 28.9 6.6 51 221-273 198-248 (281)
272 TIGR03652 FeS_repair_RIC iron- 24.7 54 0.0012 31.3 2.3 28 222-251 8-35 (216)
273 KOG2749 mRNA cleavage and poly 24.6 1.8E+02 0.0039 30.8 6.2 58 207-271 211-273 (415)
274 KOG2387 CTP synthase (UTP-ammo 24.5 1.4E+02 0.0031 32.3 5.5 58 233-306 363-422 (585)
275 PRK07649 para-aminobenzoate/an 24.5 85 0.0018 29.4 3.6 70 203-290 17-87 (195)
276 TIGR01769 GGGP geranylgeranylg 24.4 2.3E+02 0.0049 27.2 6.5 58 221-280 12-71 (205)
277 TIGR01283 nifE nitrogenase mol 24.4 3.8E+02 0.0082 28.4 8.8 37 212-248 202-238 (456)
278 COG1922 WecG Teichoic acid bio 24.2 3E+02 0.0065 27.5 7.4 39 145-189 109-147 (253)
279 cd00381 IMPDH IMPDH: The catal 24.2 7.7E+02 0.017 25.0 11.0 104 221-339 121-225 (325)
280 TIGR01133 murG undecaprenyldip 24.2 6.6E+02 0.014 24.3 11.4 36 235-270 2-38 (348)
281 PRK03359 putative electron tra 24.1 2.9E+02 0.0064 27.3 7.4 52 224-276 71-127 (256)
282 PRK08857 para-aminobenzoate sy 24.1 1.5E+02 0.0031 27.5 5.1 50 229-291 39-88 (193)
283 TIGR01302 IMP_dehydrog inosine 24.1 6.1E+02 0.013 27.0 10.3 101 222-341 252-357 (450)
284 cd02038 FleN-like FleN is a me 23.9 4.8E+02 0.01 22.6 8.4 69 240-343 8-76 (139)
285 PRK11780 isoprenoid biosynthes 23.8 89 0.0019 30.0 3.6 34 229-262 81-130 (217)
286 TIGR03100 hydr1_PEP hydrolase, 23.8 6.6E+02 0.014 24.2 10.4 82 235-328 28-118 (274)
287 TIGR00888 guaA_Nterm GMP synth 23.7 73 0.0016 29.2 2.9 48 229-291 37-86 (188)
288 cd06292 PBP1_LacI_like_10 Liga 23.7 5.9E+02 0.013 23.6 13.8 86 147-268 2-89 (273)
289 PRK13371 4-hydroxy-3-methylbut 23.6 2E+02 0.0044 30.4 6.4 54 220-274 275-328 (387)
290 PF02569 Pantoate_ligase: Pant 23.5 1.1E+02 0.0025 30.8 4.4 32 307-339 21-53 (280)
291 COG1303 Uncharacterized protei 23.5 5.1E+02 0.011 24.4 8.2 90 148-255 34-124 (179)
292 TIGR02673 FtsE cell division A 23.4 1.5E+02 0.0033 27.2 5.1 56 314-371 137-194 (214)
293 PRK11366 puuD gamma-glutamyl-g 23.4 3.1E+02 0.0067 26.8 7.4 45 197-243 27-71 (254)
294 PLN02591 tryptophan synthase 23.2 2E+02 0.0043 28.4 6.0 47 221-270 94-141 (250)
295 PLN02948 phosphoribosylaminoim 23.2 1.5E+02 0.0033 32.7 5.7 16 222-237 426-441 (577)
296 PF13353 Fer4_12: 4Fe-4S singl 23.2 1.2E+02 0.0026 25.8 4.0 41 221-261 40-84 (139)
297 cd04724 Tryptophan_synthase_al 23.0 5.8E+02 0.013 24.6 9.2 127 237-375 4-141 (242)
298 cd01966 Nitrogenase_NifN_1 Nit 22.8 6.6E+02 0.014 26.4 10.2 70 223-296 71-146 (417)
299 PRK13276 cell wall biosynthesi 22.7 79 0.0017 30.9 3.1 27 222-250 15-41 (224)
300 cd00758 MoCF_BD MoCF_BD: molyb 22.3 2.4E+02 0.0052 24.5 5.8 53 192-244 14-69 (133)
301 TIGR02769 nickel_nikE nickel i 22.1 1.5E+02 0.0033 28.5 5.0 59 314-373 150-210 (265)
302 TIGR01303 IMP_DH_rel_1 IMP deh 22.1 8.3E+02 0.018 26.4 10.9 103 221-340 252-357 (475)
303 PRK13111 trpA tryptophan synth 21.9 7.8E+02 0.017 24.3 10.3 129 234-375 13-154 (258)
304 PF11823 DUF3343: Protein of u 21.7 1.1E+02 0.0023 24.0 3.2 42 243-287 8-49 (73)
305 PTZ00314 inosine-5'-monophosph 21.5 7.6E+02 0.017 26.8 10.5 97 224-340 271-373 (495)
306 PF02401 LYTB: LytB protein; 21.4 2E+02 0.0044 28.9 5.8 77 221-299 198-278 (281)
307 PF02633 Creatininase: Creatin 21.3 2.7E+02 0.0058 26.6 6.4 87 222-338 88-175 (237)
308 cd06338 PBP1_ABC_ligand_bindin 21.3 3.6E+02 0.0077 26.3 7.5 63 205-270 165-230 (345)
309 PRK09330 cell division protein 21.3 3.6E+02 0.0079 28.4 7.8 110 143-269 12-137 (384)
310 PF10432 bact-PGI_C: Bacterial 21.2 6.2E+02 0.013 22.9 8.5 121 223-360 9-154 (155)
311 PF07355 GRDB: Glycine/sarcosi 21.2 1.2E+02 0.0026 31.6 4.2 98 143-240 226-347 (349)
312 cd03250 ABCC_MRP_domain1 Domai 21.1 1.6E+02 0.0035 27.0 4.7 56 315-371 128-185 (204)
313 KOG4180 Predicted kinase [Gene 21.1 50 0.0011 34.3 1.3 29 234-268 106-135 (395)
314 TIGR01916 F420_cofE F420-0:gam 20.9 2.1E+02 0.0045 28.5 5.5 93 307-409 88-198 (243)
315 PRK03369 murD UDP-N-acetylmura 20.9 3.9E+02 0.0085 28.5 8.2 59 219-283 362-428 (488)
316 cd08197 DOIS 2-deoxy-scyllo-in 20.5 9.4E+02 0.02 24.7 12.0 106 222-341 11-118 (355)
317 PF01761 DHQ_synthase: 3-dehyd 20.5 36 0.00078 33.7 0.2 65 221-291 14-81 (260)
318 cd04724 Tryptophan_synthase_al 20.4 1.4E+02 0.0031 28.8 4.4 48 222-271 93-140 (242)
319 PRK12446 undecaprenyldiphospho 20.4 7.2E+02 0.016 25.2 9.7 95 236-332 4-114 (352)
320 PF00571 CBS: CBS domain CBS d 20.4 1.7E+02 0.0038 20.6 3.9 29 220-248 16-44 (57)
321 PF04392 ABC_sub_bind: ABC tra 20.2 2.5E+02 0.0055 27.4 6.1 73 146-247 1-73 (294)
322 PRK14478 nitrogenase molybdenu 20.2 1.1E+03 0.023 25.3 11.9 151 222-413 108-262 (475)
323 cd06267 PBP1_LacI_sugar_bindin 20.0 6.5E+02 0.014 22.6 9.2 83 146-268 1-84 (264)
No 1
>PLN02564 6-phosphofructokinase
Probab=100.00 E-value=1e-97 Score=771.62 Aligned_cols=354 Identities=80% Similarity=1.314 Sum_probs=338.3
Q ss_pred cCCCcceeccccccccccCCCCcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCCCCccc
Q 015095 49 SRQNRPVVVAVRSSNQKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGVH 128 (413)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~~r~~~ 128 (413)
.+++|+++|+ .+|++|+||||.+++|+.|++++||..|++++.....||++++.|+..+..++...++.+
T Consensus 2 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~ 71 (484)
T PLN02564 2 SSKPKIVTGD----------AGYVLEDVPHLTDYLPDLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKIVVHKDSPRGTH 71 (484)
T ss_pred CCcCccccCC----------CceeeccCcchhhcCCCcCCCCCccCCCcccccccceEeCCCCeEEEeecccccccCCcc
Confidence 4678899998 999999999999999999999999999999999999999999999998866666678899
Q ss_pred ccccCCccccccCCCCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhc
Q 015095 129 FRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208 (413)
Q Consensus 129 F~~agpr~~~~~~~~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~ 208 (413)
|++||||+++||+|+++|||||||||+|||||+|||++|+.+.+.|++.+||||++||+||+++++++|+|+.|++|+++
T Consensus 72 ~~~agpr~~i~f~p~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~ 151 (484)
T PLN02564 72 FRRAGPRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKR 151 (484)
T ss_pred ceecCCcceEEEcCcceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHhhcHhhC
Confidence 99999999999999999999999999999999999999999887788889999999999999999999999999999999
Q ss_pred CCceeeecCCCCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhH
Q 015095 209 GGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA 288 (413)
Q Consensus 209 GGs~LGTsR~~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTA 288 (413)
|||+|||||+++++++++++|++++||+||+|||||||++|++|+++++++|++|+||||||||||||++||+|||||||
T Consensus 152 GGTiLGTsR~~~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTA 231 (484)
T PLN02564 152 GGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTA 231 (484)
T ss_pred CCceeccCCCcchHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCcEEE
Q 015095 289 VEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVI 368 (413)
Q Consensus 289 v~~~~~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~~~vI 368 (413)
+++++++|++++++|.|+++||||||+|||+|||||++++||+++||+|||||.||+++++.+++++|++|+++++|+||
T Consensus 232 v~~~~~aI~~i~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~gad~iLIPE~pf~le~~~~ll~~i~~rl~~~~~~VI 311 (484)
T PLN02564 232 VEEAQRAINAAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIEKRLKENGHMVI 311 (484)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEECCCCHHHHHHHHHHhhCCCCEEEeCCCCCCcchHHHHHHHHHHHHhccCCEEE
Confidence 99999999999999999988999999999999999999999996799999999999999888999999999999999999
Q ss_pred EEeCCCCcccccccCCcccccCCCCCcccccHHHHHHHHHHhhh
Q 015095 369 VVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKIQH 412 (413)
Q Consensus 369 vvaEGa~~~~~~~~~~~~~~~Da~Gn~~l~~vg~~L~~~I~~~~ 412 (413)
|||||+++.++.+..++...+|++||++++|+|.||+++|+++|
T Consensus 312 VVAEGagq~~~~~~~~~~~~~Da~Gn~~l~dig~~La~~I~~~~ 355 (484)
T PLN02564 312 VVAEGAGQDLIAESMESSDLQDASGNKLLLDVGLWLSQKIKDHF 355 (484)
T ss_pred EEeCCCccchhhhhhcccccccccCCcccCcHHHHHHHHHHHHh
Confidence 99999998888765444456899999999999999999999987
No 2
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=5.2e-89 Score=703.21 Aligned_cols=323 Identities=54% Similarity=0.865 Sum_probs=303.2
Q ss_pred CCCCCCCCCCCcccccccccccccChHHHHHHHhccC------CCCcccccccCCccccccCCCCeeEEEEccCCCCchh
Q 015095 86 LPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKD------SPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGI 159 (413)
Q Consensus 86 ~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~------~~r~~~F~~agpr~~~~~~~~~~~iaIvtsGG~apGm 159 (413)
-+++++||..+.+++... +||++++.|+..+..++. ..+..+|++||||+++||+|+++|+||||||||||||
T Consensus 17 ~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~i~f~p~~~riaIvtsGG~~PGm 95 (443)
T PRK06830 17 ECKIPSPLIYSLAAGDTT-HFVSDSDRVLFDVSLSLIKEEDAPGTEPPSFEKAGPREKIYFDPSKVKAAIVTCGGLCPGL 95 (443)
T ss_pred CCCCCCcccccccccccc-eecCCCceEEEecccccccccccCccccchhhhcCCcceeEEcCcccEEEEECCCCCchHH
Confidence 467789999988888777 899999999887654432 2355789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhCCCcEEEEEcccchhccC---CCeeeCChhhHhhhhhcCCceeeecCCCCcHHHHHHHHHHhCCcE
Q 015095 160 NTVIREIVCGLSYMYGVDEILGIEGGYRGFYS---KNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQ 236 (413)
Q Consensus 160 NavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~---~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~~iv~~l~~~~Id~ 236 (413)
|++||++|+.+.++|++.+||||++||+||++ +++++|+|+.|++|+++|||+|||||+++++++++++|++++||+
T Consensus 96 N~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~~GGTiLGTsR~~~~~~~iv~~L~~~~I~~ 175 (443)
T PRK06830 96 NDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGGTILGSSRGPQDPEEIVDTLERMNINI 175 (443)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEECCHHHHhhHHhCCCccccCCCCchhHHHHHHHHHHcCCCE
Confidence 99999999999888888999999999999998 899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHHHHhhhccCCcEEEEEcC
Q 015095 237 VYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLM 316 (413)
Q Consensus 237 LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i~~~A~s~~~rv~iVEvM 316 (413)
||+|||||||++|++|++++++++++|+||||||||||||++||+|||||||+++++++|++++++|.|+++||||||+|
T Consensus 176 L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~~a~~aI~~~~~eA~s~~~rv~iVEvM 255 (443)
T PRK06830 176 LFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVEKATEAIRCAHVEANGAPNGIGLVKLM 255 (443)
T ss_pred EEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred CCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCcEEEEEeCCCCcccccccCCcccccCCCCCcc
Q 015095 317 GRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRL 396 (413)
Q Consensus 317 GR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~~~vIvvaEGa~~~~~~~~~~~~~~~Da~Gn~~ 396 (413)
||+|||||++++||+++||+|||||.||+++++.+++++|++|+++++|+|||||||+++.+... ...+|+|||++
T Consensus 256 GR~sG~lA~~aaLA~~~ad~ilIPE~~f~l~~~~~ll~~l~~r~~~~~~~VIVVAEGag~~l~~~----~~~~Da~gn~~ 331 (443)
T PRK06830 256 GRHSGFIAAYAALASKDVNFVLIPEVPFDLEGPNGLLAALEKRLAERGHAVIVVAEGAGQELFDD----TGETDASGNPK 331 (443)
T ss_pred CCcccHHHHHHHHhcCCCCEEEecCCCCCchhHHHHHHHHHHHHHhCCceEEEEecCcccccccc----cccccccCCcc
Confidence 99999999999999967999999999999999999999999999999999999999998877643 23689999999
Q ss_pred cccHHHHHHHHHHhhhC
Q 015095 397 LLDIGLWLTQKIKIQHT 413 (413)
Q Consensus 397 l~~vg~~L~~~I~~~~~ 413 (413)
++|+|.||+++|+++|+
T Consensus 332 l~~ig~~L~~~i~~~~~ 348 (443)
T PRK06830 332 LGDIGLFLKDRIKEYFK 348 (443)
T ss_pred cccHHHHHHHHHHHHhc
Confidence 99999999999999883
No 3
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=100.00 E-value=3.4e-88 Score=700.23 Aligned_cols=336 Identities=51% Similarity=0.808 Sum_probs=303.6
Q ss_pred cccccchhhcCCC--CCCCCCCCCCCccccccc--------ccccccChHHHHHHHhccC--CCCcccccccCCcccccc
Q 015095 73 LEDVPHLTNFLPD--LPSYPNPLKKSQAYAVVK--------QTFVSPEDAVAQNIVIQKD--SPRGVHFRRAGPREKVYF 140 (413)
Q Consensus 73 ~eav~~l~~~~p~--~p~~~~~l~~n~~~~~~~--------~~~V~~t~~V~~~~~~~~~--~~r~~~F~~agpr~~~~~ 140 (413)
+|.|.+|.--.|+ +|...+|.-++..++.|+ ..||++++.|+..+..++. ..+..+|++||||+++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~agpr~~~~f 83 (459)
T PTZ00286 4 IERVNNLIIDLPDAPLPSVVNPDLGECNLRGVFGGNGFLPREAFVDTNSYILSTPRFGPDDVIVNTKRWLRAGPRKHLYF 83 (459)
T ss_pred eecccccccCCccccCCCcccccCCcCCCCCCccccccCCccceecCCCeEEeecccCccccccccchheecCCceeEEE
Confidence 4555555555443 455555555554444444 4899999999998765542 235689999999999999
Q ss_pred CCCCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCC
Q 015095 141 KSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH 220 (413)
Q Consensus 141 ~~~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~ 220 (413)
+|+++|||||||||||||||+|||++|+.+.+.|++.+||||++||+||+++++++|+|+.|++|+++|||+|||||+++
T Consensus 84 ~p~~~~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGTiLGTSR~~~ 163 (459)
T PTZ00286 84 NPKEVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDVKTIHRLGGTILGSSRGGF 163 (459)
T ss_pred cccccEEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHhcCCCeEECCHHHhhhHHhCCCceeccCCChh
Confidence 99999999999999999999999999999987788899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHHH
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAH 300 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i~ 300 (413)
++++|+++|++++||+||+|||||||++|.+|++++++++++|+||||||||||||++||+|||||||+++++++|++++
T Consensus 164 ~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~~~~~aI~~~~ 243 (459)
T PTZ00286 164 DPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVEEAQNAIRAAY 243 (459)
T ss_pred hHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCcEEEEEeCCCCccccc
Q 015095 301 VEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVA 380 (413)
Q Consensus 301 ~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~~~vIvvaEGa~~~~~~ 380 (413)
++|.|+++||||||+|||+|||||++++||+++||+|||||.||+++ +++++|++|+++++|+|||||||+++.+.+
T Consensus 244 ~eA~S~~~~v~iVEvMGR~sG~LAl~aaLA~~~ad~vlIPE~~f~l~---~ll~~l~~r~~~~~~~VIVVaEGa~~~~~~ 320 (459)
T PTZ00286 244 VEAKSAKNGVGIVKLMGRDSGFIALHASVASADVNVCLIPEFDIPLE---GVLEYIEQRLQKKGHCVIVVAEGAGQSLKD 320 (459)
T ss_pred HHHHHhcCcEEEEEecCcchhHHHHHHhhhhcCCCEEEeCCCCCCHH---HHHHHHHHHHhcCCcEEEEEecCCcccccc
Confidence 99999988999999999999999999999995699999999999997 899999999999999999999999988776
Q ss_pred ccCCcccccCCCCCcccccHHHHHHHHHHhhhC
Q 015095 381 QSMPAVDEKDASGNRLLLDIGLWLTQKIKIQHT 413 (413)
Q Consensus 381 ~~~~~~~~~Da~Gn~~l~~vg~~L~~~I~~~~~ 413 (413)
... ...+|++||++++|+|.||+++|+++|+
T Consensus 321 ~~~--~~~~D~~Gn~~l~dig~~L~~~I~~~~~ 351 (459)
T PTZ00286 321 ADL--DLGTDASGNKKLWDIGVYLKDEITKYLK 351 (459)
T ss_pred ccc--cccccccCCcccccHHHHHHHHHHHHHh
Confidence 544 2358999999999999999999999873
No 4
>PLN02884 6-phosphofructokinase
Probab=100.00 E-value=5.8e-82 Score=646.55 Aligned_cols=301 Identities=54% Similarity=0.916 Sum_probs=274.1
Q ss_pred ccccChHHHHHHHhccCC--------------CCcccccccCCccccccCCCCeeEEEEccCCCCchhHHHHHHHHHHHh
Q 015095 106 FVSPEDAVAQNIVIQKDS--------------PRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLS 171 (413)
Q Consensus 106 ~V~~t~~V~~~~~~~~~~--------------~r~~~F~~agpr~~~~~~~~~~~iaIvtsGG~apGmNavIr~iv~~l~ 171 (413)
||.++|+|+.+... -.+ ....+|+|||||+++||+|.++|||||||||||||||++||++|+.+.
T Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~~~~~p~~~rIaIltsGGdaPGmNa~Iravv~~a~ 80 (411)
T PLN02884 2 YVNNDDRVLLKVIK-YSSPTSAGAECIDPDCSWVEQWVHRAGPRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLE 80 (411)
T ss_pred CcCccchhheeeee-ccCCCcccccccCCCcccchhhhhhcCCceeEEeCCcceEEEEEcCCCCCccHhHHHHHHHHHHH
Confidence 67777777766421 111 123578999999999999999999999999999999999999999875
Q ss_pred HhCCCcEEEEEcccchhccCCC--eeeCChhhHhhhhhcCCceeeecCCCCcHHHHHHHHHHhCCcEEEEEcCCcchHHH
Q 015095 172 YMYGVDEILGIEGGYRGFYSKN--TLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGA 249 (413)
Q Consensus 172 ~~~~~~~V~Gi~~G~~GL~~~~--~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a 249 (413)
.|+..+|||+++||+||++++ .++|+|+.|++|+++|||+|||||++.++++++++|++++||+||+|||||||++|
T Consensus 81 -~~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a 159 (411)
T PLN02884 81 -IYGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGGSLLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGA 159 (411)
T ss_pred -HcCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCCceeccCCCCccHHHHHHHHHHcCCCEEEEECCchHHHHH
Confidence 466668999999999999998 67789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhh
Q 015095 250 ALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATL 329 (413)
Q Consensus 250 ~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaL 329 (413)
.+|++++++++++++||||||||||||++||+|||||||+++++++|++++.+|.|+++||||||+|||+|||||++++|
T Consensus 160 ~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~~~~~ai~~l~~tA~s~~~rv~iVEvMGR~aG~LAl~aal 239 (411)
T PLN02884 160 NAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGLVKLMGRSSGFIAMHASL 239 (411)
T ss_pred HHHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHHHHHHHHHHHHHhhhccCCcEEEEEeCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988767899999999999999999999
Q ss_pred hcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCcEEEEEeCCCCcccccccCCcccccCCCCCcccccHHHHHHHHHH
Q 015095 330 ASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIK 409 (413)
Q Consensus 330 A~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~~~vIvvaEGa~~~~~~~~~~~~~~~Da~Gn~~l~~vg~~L~~~I~ 409 (413)
|++.||+|||||.||+++++++++++|+++++.++|++||||||+++.+.... ..+|++||++++|+|.+|+++|+
T Consensus 240 A~g~ad~ilIPE~~f~~~~~~~~~~~i~~~~~~k~~~iIVVAEG~g~~~~~~~----~~~Da~G~~~l~~~~~~La~~i~ 315 (411)
T PLN02884 240 ASGQVDICLIPEVPFTLDGPNGVLRHLEHLIETKGSAVVCVAEGAGQDLLQKT----NATDASGNPVLGDIGVHLQQEIK 315 (411)
T ss_pred hcCCCCEEEeCCCCCCcccHHHHHHHHHHHHhcCCcEEEEEeccccccccccc----ccccccCCcccCcHHHHHHHHHH
Confidence 99339999999999999888899999999999889999999999976655432 35899999999999999999999
Q ss_pred hhh
Q 015095 410 IQH 412 (413)
Q Consensus 410 ~~~ 412 (413)
++|
T Consensus 316 ~~~ 318 (411)
T PLN02884 316 KHF 318 (411)
T ss_pred HHh
Confidence 885
No 5
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=2.2e-73 Score=617.04 Aligned_cols=327 Identities=22% Similarity=0.237 Sum_probs=286.8
Q ss_pred CCcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC-----CCcccccccC--------Cc
Q 015095 69 DGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG--------PR 135 (413)
Q Consensus 69 ~~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag--------pr 135 (413)
..+.++||.+|++.+|++|.+++.+++|+.+++|++++|+.|+.|+++| .+++| +|+.+|.+++ ++
T Consensus 302 ~~~G~~AV~~l~~g~~~~~~~~i~~~~~~i~~~pl~e~v~~~k~v~~~~-~~~~~~~a~~lr~~~f~~~~~~~~~~~~~~ 380 (762)
T cd00764 302 SLMGVEAVMALLEATPDTPACVVSLNGNKAVRLPLMECVQLTKDVQKAM-DEKRFDEAAALRGKSFDKNWNLYKLLAIEL 380 (762)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEEHHHHHhhccchhhhh-hhhhHHHHHHhcchhHHHHHHHHHhccccC
Confidence 3578999999999999999999999999999999999999999999999 57777 6999999977 21
Q ss_pred cccccCCCCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeee
Q 015095 136 EKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRT 215 (413)
Q Consensus 136 ~~~~~~~~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGT 215 (413)
.....+.+.+||||+||||||||||++||++|+++.. .+++||||++||+||+++++++|+|..|++|+++|||+|||
T Consensus 381 ~~~~~~~~~~~IaIltsGG~apGmNaairavv~~a~~--~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~LGT 458 (762)
T cd00764 381 PQPLPEKTNLNIAIVNVGAPAAGMNAAVRSAVRYGLA--HGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGSELGT 458 (762)
T ss_pred CccCCcccccEEEEEecCCCchhHHHHHHHHHHHHHH--CCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcccccc
Confidence 1111123458999999999999999999999998763 46899999999999999999999999999999999999999
Q ss_pred cCCC--CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc-CCCceeeeeeccccCCCcccccccCchhHHHHH
Q 015095 216 SRGG--HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEA 292 (413)
Q Consensus 216 sR~~--~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~-~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~ 292 (413)
+|+. +++++++++|++++||+|++||||||+++|++|++++.++ .+.|+|||||||||||||+||+|||||||+|++
T Consensus 459 ~R~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln~~ 538 (762)
T cd00764 459 KRTLPKKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALNAL 538 (762)
T ss_pred cCCCcHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHHHH
Confidence 9985 5899999999999999999999999999999999988776 478999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-----CCcEE
Q 015095 293 QRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-----NGHMV 367 (413)
Q Consensus 293 ~~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~-----~~~~v 367 (413)
+++||+++++|.|+++||||||+|||+|||||++++||+ +||+|||||+||+++.+...++++.+++++ +.+.+
T Consensus 539 ~~~id~i~~tA~s~~~RvfVVEvMGR~~G~LA~~aglA~-GAd~i~iPE~~~~~~~l~~dv~~l~~~~~~~~~~g~~~~~ 617 (762)
T cd00764 539 MKYCDRIKQSASGTKRRVFIVETMGGYCGYLATMTGLAV-GADAAYVFEEPFNIRDLQENVEHLTEKMKTTIGRGLVLRN 617 (762)
T ss_pred HHHHHHHHHHHhhcCCeEEEEEeCCCCccHHHHHHHhhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEee
Confidence 999999999999998899999999999999999999999 799999999999999877778888777755 23578
Q ss_pred EEEeCCCCcccccc----cCCc--ccccCCCCCccccc
Q 015095 368 IVVAEGAGQEFVAQ----SMPA--VDEKDASGNRLLLD 399 (413)
Q Consensus 368 IvvaEGa~~~~~~~----~~~~--~~~~Da~Gn~~l~~ 399 (413)
+++|||+....+.+ ..+. +.+...-||.|.||
T Consensus 618 ~~~se~~~~~~~~~~~~~~~~~~~~~R~~vLGh~QrGG 655 (762)
T cd00764 618 EKCNENYTTVFTYELYSEEGKGVFDCRTNVLGHVQQGG 655 (762)
T ss_pred eeeecCCccccHHHHHHHHHhcCCceEecccccccCCC
Confidence 99999985332222 2211 11234449999998
No 6
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=100.00 E-value=2.7e-71 Score=564.79 Aligned_cols=266 Identities=26% Similarity=0.427 Sum_probs=238.9
Q ss_pred eeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChh--h-HhhhhhcCCceeeecCCCC-
Q 015095 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPK--V-VNDIHKRGGTILRTSRGGH- 220 (413)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~--~-V~~i~~~GGs~LGTsR~~~- 220 (413)
.||||+||||||||||++||++++.+...+++.+|||+++||+||+++++++|++. . ++.|+.+|||+|||||++.
T Consensus 4 k~i~IltsGGdapGmNaaI~~vv~~a~~~~~~~~V~G~~~G~~GL~~~~~~~l~~~~~~~~~~i~~~GGt~LGtsR~~~~ 83 (403)
T PRK06555 4 KKVALLTAGGLAPCLSSAVGGLIERYTEIAPEVEIIAYRSGYQGLLLGDSIEITPAVRANAGLLHRYGGSPIGNSRVKLT 83 (403)
T ss_pred CEEEEECCCCCchhHHHHHHHHHHHHHhhcCCcEEEEEecCHHHhcCCCceeCChhHhhhhhHHHhCCCceeccCCCCcc
Confidence 49999999999999999999999977654567899999999999999999999985 3 4559999999999999743
Q ss_pred ----------------cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccC
Q 015095 221 ----------------DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFG 284 (413)
Q Consensus 221 ----------------d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~G 284 (413)
++++++++|++++||+||+||||||+++|++|+++++++++.|+||||||||||||++||+|||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~G 163 (403)
T PRK06555 84 NVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLG 163 (403)
T ss_pred ccchhccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcC
Confidence 3689999999999999999999999999999999999988899999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhc-------------------CCccEEEcCCCCCC
Q 015095 285 FDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLAS-------------------RDVDCCLIPESPFY 345 (413)
Q Consensus 285 FdTAv~~~~~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~-------------------~~ad~ilIPE~pf~ 345 (413)
||||+++++++|++++.+|.|+++.++|||+|||+|||||++++||. ++||+|||||.||+
T Consensus 164 f~TA~~~~~~ai~~l~~ta~s~~r~~~vvEvMGR~aG~LAl~aalA~~~~~~~~~~~~~~~~~~~~~gad~ilIPE~~~~ 243 (403)
T PRK06555 164 AWTAAEQGARFFDNVINEHSANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERWDIHAVYLPEMAFD 243 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEEEccCCchHHHHHHHHHhhccccccccccccccccccCCCCcEEEccCCCCC
Confidence 99999999999999999999998666666999999999999999992 38999999999999
Q ss_pred CCChhhHHHHHHHHHHhCCcEEEEEeCCCCcccccccCCc---ccccCCCCCccccc--HHHHHHHHHHhhhC
Q 015095 346 LEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPA---VDEKDASGNRLLLD--IGLWLTQKIKIQHT 413 (413)
Q Consensus 346 l~~~~~~~e~i~~r~~~~~~~vIvvaEGa~~~~~~~~~~~---~~~~Da~Gn~~l~~--vg~~L~~~I~~~~~ 413 (413)
++ ++++.|++++++++|++||||||+.+.+..+.+.+ ...+|++||+++++ +|.||+++|+++++
T Consensus 244 ~e---~~~~~ik~~~~~k~~~iIvVaEG~~~~~~~~~~~~~g~~~~~Da~G~~~l~~~~~g~~la~~i~~~~g 313 (403)
T PRK06555 244 LE---AEAERLKAVMDEVGNVNIFLSEGAGLDAIVAEMEAAGEEVKRDAFGHVKLDTINPGAWFAKQFAELLG 313 (403)
T ss_pred HH---HHHHHHHHHHHhCCCEEEEEeCCCCcccchhhhhhccCccccccccceecCCCcHHHHHHHHHHHHhC
Confidence 87 79999999998899999999999976555443321 12489999999987 79999999998763
No 7
>PRK14072 6-phosphofructokinase; Provisional
Probab=100.00 E-value=9.7e-71 Score=565.71 Aligned_cols=261 Identities=25% Similarity=0.354 Sum_probs=234.6
Q ss_pred eeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhh---hhhcCCceeeecCCCC-
Q 015095 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVND---IHKRGGTILRTSRGGH- 220 (413)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~---i~~~GGs~LGTsR~~~- 220 (413)
.||||+||||||||||++||++++.+.+..+..+|||+++||+||+++++++|+...++. |.++|||+|||||++.
T Consensus 4 k~i~IltsGGdapGmNaaIr~vv~~a~~~g~~~~V~G~~~G~~GLl~~~~~~l~~~~~~~i~~i~~~gGt~LgssR~~~~ 83 (416)
T PRK14072 4 GNALYAQSGGPTAVINASAAGVIEEARKHKKIGKVYGARNGIIGILDEDLIDLSKESDEALAALAHTPSGALGSCRYKLK 83 (416)
T ss_pred ceEEEEccCCchHHHHHHHHHHHHHHHHhCCceEEEEEecChHHhcCCCeeeCChhhHhHHHHHhcCCCeEeccCCCCCc
Confidence 599999999999999999999999887544448999999999999999999999877777 8999999999999853
Q ss_pred -------cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHH
Q 015095 221 -------DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQ 293 (413)
Q Consensus 221 -------d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~ 293 (413)
++++++++|++++||+||+|||||||++|++|+++++++|++++||||||||||||++||+|||||||+++++
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~~~i~ 163 (416)
T PRK14072 84 SLEEDRAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAKYIA 163 (416)
T ss_pred ccccChHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCC--cEEEEEcCCCCcchHHHHHhhh-----cCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCcE
Q 015095 294 RAINAAHVEVESVEN--GVGIVKLMGRYSGFISMYATLA-----SRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHM 366 (413)
Q Consensus 294 ~~i~~i~~~A~s~~~--rv~iVEvMGR~sG~LA~~aaLA-----~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~~~ 366 (413)
++|+++..++.++.+ ||||||+|||+|||||+++||| + +||+|||||.||+++ .+++.|++++++++|+
T Consensus 164 ~ai~~l~~D~~~ta~s~Rv~iVEvMGR~aG~LAl~a~lA~~~~~~-gad~iliPE~~~~~~---~~~~~i~~~~~~~~~~ 239 (416)
T PRK14072 164 TSVLEAALDVAAMANTSKVFILEVMGRHAGWLAAAAALAKQNPDD-APHLIYLPERPFDEE---KFLADVRAIVKRYGYC 239 (416)
T ss_pred HHHHHHHHHHHhcccCceEEEEEEeCcchhHHHHHHhhccccCCC-CccEEEccCCCCCHH---HHHHHHHHHHHhCCCe
Confidence 999999554443321 7999999999999999999999 6 799999999999987 8999999999889999
Q ss_pred EEEEeCCCCc---ccccccCCcccccCCCCCcccccHHHHHHHHHHhhh
Q 015095 367 VIVVAEGAGQ---EFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKIQH 412 (413)
Q Consensus 367 vIvvaEGa~~---~~~~~~~~~~~~~Da~Gn~~l~~vg~~L~~~I~~~~ 412 (413)
+||||||+.. .++.+. ...+|++||+++++++++|+++|++++
T Consensus 240 ivvVaEG~~~~~g~~i~e~---~~~~D~~gh~~l~g~~~~La~~i~~~~ 285 (416)
T PRK14072 240 VVVVSEGIRDADGKFIAEA---GLAEDAFGHAQLGGVAPVLANLIKEKL 285 (416)
T ss_pred EEEEecCcccccccchhcc---ccccCCCCCcccccHHHHHHHHHHHHh
Confidence 9999999843 222221 124699999999999999999999875
No 8
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=100.00 E-value=1.6e-70 Score=548.21 Aligned_cols=254 Identities=39% Similarity=0.614 Sum_probs=232.7
Q ss_pred eEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeC-ChhhHhhhhhcCCceeeecCCCC----
Q 015095 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTL-SPKVVNDIHKRGGTILRTSRGGH---- 220 (413)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~L-t~~~V~~i~~~GGs~LGTsR~~~---- 220 (413)
|||||||||||||||++||++++++.+.+ +.+|||+++||+||+++++++| +|+.++.|.++|||+|||+|+..
T Consensus 1 ~IgIltsGG~apGmN~~i~~~v~~a~~~~-g~~v~g~~~G~~GL~~~~~~~l~~~~~v~~~~~~GGt~LgtsR~~~~~~~ 79 (324)
T TIGR02483 1 RIGVLTGGGDCPGLNAVIRGVVRRAIAEY-GWEVIGIRDGWRGLLEGDTVPLLDLEDVRGILPRGGTILGSSRTNPFKYE 79 (324)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHcC-CceEEEEccCHHHhCCCCeEecCCHHHHHHHHhCCCccccCCCCCccccC
Confidence 69999999999999999999999876434 4699999999999999999999 99999999999999999999842
Q ss_pred --cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHH
Q 015095 221 --DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINA 298 (413)
Q Consensus 221 --d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~ 298 (413)
++++++++|++++||+|++||||||+++|++|++. + ++|||||||||||+++||+|||||||+++++++|++
T Consensus 80 ~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~~----g--i~vigiPkTIDNDl~gtd~tiGfdTA~~~~~~~i~~ 153 (324)
T TIGR02483 80 EDGDDKIVANLKELGLDALIAIGGDGTLGIARRLADK----G--LPVVGVPKTIDNDLEATDYTFGFDTAVEIATEALDR 153 (324)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHhc----C--CCEEeeccccCCCCcCCccCcCHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999862 4 889999999999999999999999999999999999
Q ss_pred HHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-CCcEEEEEeCCCCcc
Q 015095 299 AHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQE 377 (413)
Q Consensus 299 i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~-~~~~vIvvaEGa~~~ 377 (413)
++++|.|+ +||||||+|||+|||||++++||+ +||+|||||+||+++ ++++.|++|+++ ++|++||||||+...
T Consensus 154 i~~ta~S~-~r~~ivEvMGR~~G~LAl~~ala~-~a~~iliPE~~~~~~---~l~~~v~~~~~~g~~~~vvvvsEG~~~~ 228 (324)
T TIGR02483 154 LHTTAESH-HRVMVVEVMGRHAGWIALHSGIAG-GADVILIPEIPFDID---SVCEKVRERFARGKRFAIVVVAEGAKPK 228 (324)
T ss_pred HHHHHhhc-CCEEEEEEcCCChhHHHHHHHhcc-CCCEEEecCCCCCHH---HHHHHHHHHHHhCCCceEEEEecCcccc
Confidence 99999997 589999999999999999999999 899999999999987 799999999988 789999999999755
Q ss_pred cccccCCcccccCCCCCcccccHHHHHHHHHHhhh
Q 015095 378 FVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKIQH 412 (413)
Q Consensus 378 ~~~~~~~~~~~~Da~Gn~~l~~vg~~L~~~I~~~~ 412 (413)
+..... +...+|++||+++++++.+|+++|++++
T Consensus 229 ~~~~~~-~~~~~d~~gh~~~~~~~~~l~~~i~~~~ 262 (324)
T TIGR02483 229 GGEMVV-QEGVKDAFGHVRLGGIGNWLAEEIERRT 262 (324)
T ss_pred ccchhc-cccccccccCcccCcHHHHHHHHHHHhc
Confidence 443322 2235899999999999999999999875
No 9
>PRK14071 6-phosphofructokinase; Provisional
Probab=100.00 E-value=8.7e-70 Score=549.78 Aligned_cols=254 Identities=33% Similarity=0.540 Sum_probs=230.6
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCC--CeeeCChhhHhhhhhcCCceeeecCC-C-
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRG-G- 219 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~--~~~~Lt~~~V~~i~~~GGs~LGTsR~-~- 219 (413)
..||||+||||||||||++||++++.+.+.++ .+|||+++||+||+++ ++++|+|..|++|+++|||+|||||. .
T Consensus 4 ~~~I~IltsGG~apGmNa~i~~vv~~a~~~~g-~~v~G~~~G~~GL~~~~~~~~~l~~~~v~~~~~~GGt~LgtsR~~~~ 82 (360)
T PRK14071 4 KKRIGILTSGGDCAGLNAVIRAVVHRARGTYG-WEVIGIRDATQGLMARPPQYIELDLDQVDDLLRMGGTILGTTNKGDP 82 (360)
T ss_pred CCEEEEECCCCCchhHHHHHHHHHHHHHhcCC-CEEEEEecChHHHhcCCCCeEECCHHHHhhHHhCCCceeccCCCCCc
Confidence 45999999999999999999999998875444 5999999999999999 89999999999999999999999973 1
Q ss_pred -----------CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhH
Q 015095 220 -----------HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA 288 (413)
Q Consensus 220 -----------~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTA 288 (413)
+++++++++|++++||+||+||||||+++|++|++. ..|+||||||||||||++||+|||||||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~-----~~i~vIgiPkTIDNDl~~td~t~Gf~TA 157 (360)
T PRK14071 83 FAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLAILRRLAQQ-----GGINLVGIPKTIDNDVGATEVSIGFDTA 157 (360)
T ss_pred cccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHh-----cCCcEEEecccccCCCcCcccCcChhHH
Confidence 236899999999999999999999999999999863 2588999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-CCcEE
Q 015095 289 VEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMV 367 (413)
Q Consensus 289 v~~~~~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~-~~~~v 367 (413)
+++++++||+++++|.|+ +||||||+|||+|||||++++||+ +||+|||||.||+++ ++++.|++|+++ ++|++
T Consensus 158 ~~~~~~~id~i~~ta~s~-~rv~ivEvMGR~~G~LAl~~~la~-ga~~iliPE~~~~~~---~l~~~i~~~~~~~~~~~i 232 (360)
T PRK14071 158 VNIATEALDRLHFTAASH-NRVMILEVMGRDAGHIALAAGIAG-GADVILIPEIPYTLE---NVCKKIRERQEEGKNFCL 232 (360)
T ss_pred HHHHHHHHHHHHhhhccc-CCEEEEEECCCCccHHHHHhHhhc-CCCEEEECCCCCCHH---HHHHHHHHHHHcCCCeEE
Confidence 999999999999999996 689999999999999999999999 899999999999987 799999999987 78999
Q ss_pred EEEeCCCCcccccccCCcccccCCCCCcccccHHHHHHHHHHhhh
Q 015095 368 IVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKIQH 412 (413)
Q Consensus 368 IvvaEGa~~~~~~~~~~~~~~~Da~Gn~~l~~vg~~L~~~I~~~~ 412 (413)
||||||+... ..+.+ ..+|++||++++++|++|+++|++++
T Consensus 233 ivvsEG~~~~-~g~~~---~~~d~~g~~~~~~~~~~l~~~i~~~~ 273 (360)
T PRK14071 233 VVVSEAVRTE-EGEQV---TKTQALGEDRYGGIGQYLAEQIAERT 273 (360)
T ss_pred EEEcCCCccc-ccccc---cccccccccccCcHHHHHHHHHHHhc
Confidence 9999999643 11221 23799999999999999999999875
No 10
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=1.5e-70 Score=596.43 Aligned_cols=326 Identities=22% Similarity=0.276 Sum_probs=286.4
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC-----CCcccccccC----------C
Q 015095 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG----------P 134 (413)
Q Consensus 70 ~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag----------p 134 (413)
.+..+||.+|++..+++|.+++.+++|+....|++++++.|+.|..++ .+++| +|+++|.+++ +
T Consensus 300 ~~G~~Av~~~~~g~~~~~~~mv~~~~~~~~~~pl~~~~~~~k~v~~~~-~~~~~~~a~~~r~~~f~~~~~~~~~~~~~~~ 378 (745)
T TIGR02478 300 RQGVEAVLAVLESTPETPSPVISLRGNKIVRKPLVEAVAQTKTVAKAI-KEKRFAEAMRLRGREFVENLATFLFLSIPDQ 378 (745)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEeHHHHHhhcCCCCHHH-HhccHHHHHHhcCHHHHHHHHHHHhhhccCC
Confidence 577999999999999999999999999999999999999999999998 57777 6999998876 2
Q ss_pred cccccc-CCCCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCcee
Q 015095 135 REKVYF-KSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTIL 213 (413)
Q Consensus 135 r~~~~~-~~~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~L 213 (413)
+..... ..+++||||+||||||||||++||++++++.+ .+++||||++||+||+++++.+|+|..|++|+++|||+|
T Consensus 379 ~~~~~~~~~~~~rIaIltsGG~apGmNaair~vv~~a~~--~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~L 456 (745)
T TIGR02478 379 DKKLVPSKASRLRIAIIHVGAPAGGMNAATRSAVRYAIA--RGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGSEL 456 (745)
T ss_pred ccccCCCCCCceEEEEEecCCCchhHHHHHHHHHHHHHh--CCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCccc
Confidence 222222 34558999999999999999999999998753 357999999999999999999999999999999999999
Q ss_pred eecCCC--CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc-CCCceeeeeeccccCCCcccccccCchhHHH
Q 015095 214 RTSRGG--HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (413)
Q Consensus 214 GTsR~~--~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~-~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~ 290 (413)
||+|+. +++++++++|++++||+||+||||||+++|.+|+++..++ ++.|+||||||||||||++||+|||||||++
T Consensus 457 gtsR~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~GfdTA~~ 536 (745)
T TIGR02478 457 GTNRELPGKDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALN 536 (745)
T ss_pred ccCCCCchhHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCCCHHHHHH
Confidence 999984 4799999999999999999999999999999999986665 4779999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhC--CcEEE
Q 015095 291 EAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN--GHMVI 368 (413)
Q Consensus 291 ~~~~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~--~~~vI 368 (413)
+++++||+++++|.|+++||||||+|||+|||||+++|||+ +||+|||||+||+++++.++++++++|++.. .+.+|
T Consensus 537 ~~~~~id~i~~ta~s~~~rv~iVEvMGR~~G~LAl~~alA~-gad~iliPE~~~~~~~l~~~v~~i~~~~~~~~~~~~ii 615 (745)
T TIGR02478 537 EITEYCDNIKQSASASKRRVFVVETMGGYSGYLATMAGLAT-GADAAYIPEEGISLKDLQEDIEHLKEKFAHGNRAGKLI 615 (745)
T ss_pred HHHHHHHHHHHhhHhcCCcEEEEEecCccccHHHHHHHhhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCCceEE
Confidence 99999999999999998899999999999999999999999 7999999999999997666677888888774 67899
Q ss_pred EEeCCCCcccccccC----C-c-----ccccCCCCCccccc
Q 015095 369 VVAEGAGQEFVAQSM----P-A-----VDEKDASGNRLLLD 399 (413)
Q Consensus 369 vvaEGa~~~~~~~~~----~-~-----~~~~Da~Gn~~l~~ 399 (413)
+++||+...+..+.+ + + ..+...-||.|.|+
T Consensus 616 v~~Eg~~~~~~~~~l~~~i~~e~~~~~~~R~~~LG~~QRgg 656 (745)
T TIGR02478 616 LRNENASKNYTTDFIARIISEEAKGRFDARTAVLGHMQQGG 656 (745)
T ss_pred EEeCCCccCCCHHHHHHHHHHHhcCCCceEeccCCccccCC
Confidence 999998543332211 1 0 11234458888876
No 11
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=100.00 E-value=3.2e-68 Score=560.32 Aligned_cols=323 Identities=24% Similarity=0.394 Sum_probs=260.1
Q ss_pred hhcCCCCCCCCCCCCCC-cccccccccccccChHHHHHHHhccCCC-----CcccccccCCccccccCCCCeeEEEEccC
Q 015095 80 TNFLPDLPSYPNPLKKS-QAYAVVKQTFVSPEDAVAQNIVIQKDSP-----RGVHFRRAGPREKVYFKSDEVRACIVTCG 153 (413)
Q Consensus 80 ~~~~p~~p~~~~~l~~n-~~~~~~~~~~V~~t~~V~~~~~~~~~~~-----r~~~F~~agpr~~~~~~~~~~~iaIvtsG 153 (413)
+.|.|.+|.+ |++- ..++... ...+..+...-...+.|| +-.+|...-... -.+...||||++||
T Consensus 6 ~~~~p~lp~~---l~~~~~~~~~~~---~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~---~~~~~~rIgIl~sG 76 (539)
T TIGR02477 6 LQYVPKLPKV---LQGDTANISLED---GEPTAAVADQEELKELFPNTYGLPIITFEPGEASP---DEHQPLKIGVILSG 76 (539)
T ss_pred hhCCCCCChH---HcCCCcceEEec---cCcccCCCCHHHHHHhChHhhCCccEEEecCCCCc---ccccceEEEEECCC
Confidence 5688999998 4331 1122221 222222222211234443 445665532111 12455899999999
Q ss_pred CCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCc-eeeecCCCC----cHHHHHHH
Q 015095 154 GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGGH----DTNKIVDN 228 (413)
Q Consensus 154 G~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs-~LGTsR~~~----d~~~iv~~ 228 (413)
|||||||++|+++++++...+++.+||||++||+||+++++++|+++.|+.|+++||+ +|||+|++. ++++++++
T Consensus 77 G~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~~~~~ 156 (539)
T TIGR02477 77 GQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGFDIIGSGRTKIETEEQFAKALTT 156 (539)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCcEEEEEecChHHhcCCCeEeCCHHHHhHHHhCCCchhhcCCCCCCCCHHHHHHHHHH
Confidence 9999999999999999887778899999999999999999999999999999999996 999999853 68999999
Q ss_pred HHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCc--ccccccCchhHHHHHHHHHHHHHHhhhcc
Q 015095 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAINAAHVEVESV 306 (413)
Q Consensus 229 l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~--gtD~S~GFdTAv~~~~~~i~~i~~~A~s~ 306 (413)
|++++||+||+||||||+++|..|++++.+++++|+|||||||||||++ +||+|||||||+++++++|++++.++.|+
T Consensus 157 l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~~~~~~I~~i~~Da~s~ 236 (539)
T TIGR02477 157 AKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGNICRDALSA 236 (539)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999998 59999999999999999999999899888
Q ss_pred CCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCC----CCCC-hhhHHHHHHHHHHh-CCcEEEEEeCCCCc----
Q 015095 307 ENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPF----YLEG-PGGLFEFIERQLKE-NGHMVIVVAEGAGQ---- 376 (413)
Q Consensus 307 ~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf----~l~~-~~~~~e~i~~r~~~-~~~~vIvvaEGa~~---- 376 (413)
+++|||||+|||+|||||++||||+ +||+|||||+++ ++++ .+.+++.|++|..+ ++|++|||+||+..
T Consensus 237 ~~~~~~VevMGR~aG~LAl~~aLat-~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsEGlie~ipe 315 (539)
T TIGR02477 237 KKYWHFIRLMGRSASHIALECALQT-HPNVCIIGEEVAAKKMTLSQLTDYIADVIVKRAAKGKNFGVILIPEGLIEFIPE 315 (539)
T ss_pred CCcEEEEEECCCCcHHHHHHHHHhc-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCchhhcch
Confidence 8899999999999999999999999 899999999997 4432 33456666777665 68999999999943
Q ss_pred ----------------------ccccccCCcc-----------------cccCCCCCcccccH--HHHHHHHHHhhh
Q 015095 377 ----------------------EFVAQSMPAV-----------------DEKDASGNRLLLDI--GLWLTQKIKIQH 412 (413)
Q Consensus 377 ----------------------~~~~~~~~~~-----------------~~~Da~Gn~~l~~v--g~~L~~~I~~~~ 412 (413)
.++.+.+... ..+|++||++++++ +++|++.+++++
T Consensus 316 ~~~Li~el~~~l~~~~~~~~~~~~i~~~ls~~s~~l~~~lp~~i~~qLl~~~D~~G~~~ls~i~te~lL~~lV~~~l 392 (539)
T TIGR02477 316 VQALIKELNNLLAQNVLEEGRKDNVQSKLSPSSKALFESLPEFIRHQLLLDRDPHGNVQVSQIETEKLLIELVQTEL 392 (539)
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhhhcCHhHHHHHhhcchhHHHhhccCcCCCCCeeeccccHHHHHHHHHHHHH
Confidence 1111111110 14799999999998 888888888765
No 12
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=100.00 E-value=1.8e-67 Score=529.21 Aligned_cols=228 Identities=34% Similarity=0.507 Sum_probs=216.1
Q ss_pred eeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCC----
Q 015095 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH---- 220 (413)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~---- 220 (413)
+||||+||||||||||++||++++++.+ + +++|||+++||+||+++++++|+|+.+++|+++|||+|||+|++.
T Consensus 1 ~ri~Il~sGG~apG~N~~i~~~v~~~~~-~-g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~ 78 (338)
T cd00363 1 KKIGVLTSGGDAPGMNAAIRGVVRSAIA-E-GLEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGTIIGSARCKEFRTE 78 (338)
T ss_pred CeEEEEccCCCchhHHHHHHHHHHHHHH-C-CCEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCeecccCCCCccCCH
Confidence 4899999999999999999999999864 4 479999999999999999999999999999999999999999853
Q ss_pred -cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHH
Q 015095 221 -DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (413)
Q Consensus 221 -d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i 299 (413)
++++++++|++++||+|++||||||+++|.+|++++++++.+++|||||||||||+++||+|||||||+++++++|+++
T Consensus 79 ~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~~~~~~~i~~l 158 (338)
T cd00363 79 EGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALKTIVEAIDRI 158 (338)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-CCcEEEEEeCCCCc
Q 015095 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQ 376 (413)
Q Consensus 300 ~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~-~~~~vIvvaEGa~~ 376 (413)
+.+|.| ++||||||+|||+|||||++++||+ +||+|||||.||+++.++.+++.|++|+++ ++|++||||||+.+
T Consensus 159 ~~~a~s-~~rv~ivEvMGR~~G~Lal~~ala~-~ad~iliPE~~~~~~~~~~~~~~i~~r~~~~~~~~vivvsEG~~~ 234 (338)
T cd00363 159 RDTASS-HQRTFVVEVMGRHCGDIALEAGLAT-GADIIFIPEEPAADEWEEEMVDVIKKRRERGKRHGIVIVAEGAID 234 (338)
T ss_pred HHhccc-CCCEEEEEECCcCHHHHHHHHHHHh-CCCEEEeCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCCCcc
Confidence 999999 4789999999999999999999999 799999999999777777999999999987 78999999999964
No 13
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=3e-67 Score=554.19 Aligned_cols=322 Identities=24% Similarity=0.374 Sum_probs=257.5
Q ss_pred hhhcCCCCCCCCCCCCCC-cccccccccccccChHHHHHHHhccCCC-----CcccccccCCccccccCCCCeeEEEEcc
Q 015095 79 LTNFLPDLPSYPNPLKKS-QAYAVVKQTFVSPEDAVAQNIVIQKDSP-----RGVHFRRAGPREKVYFKSDEVRACIVTC 152 (413)
Q Consensus 79 l~~~~p~~p~~~~~l~~n-~~~~~~~~~~V~~t~~V~~~~~~~~~~~-----r~~~F~~agpr~~~~~~~~~~~iaIvts 152 (413)
-..|.|.+|.+ |++. +.++ ......|+.+...-...+.|| +...|....+. . ....||||++|
T Consensus 10 r~~~~p~lp~~---l~~~~~~~~---~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~--~---~~~~~IgIl~s 78 (555)
T PRK07085 10 RLKYRPKLPKL---LQNDPGLIK---IVDGEFTESVADQDELAELFPNTYGLPYVTFVKGSES--S---SKPLKVGVILS 78 (555)
T ss_pred HHhCCCCCCHH---HhCCCCCce---EeecCCccccCCHHHHHHhChHhhCCccEEEEeCCCC--c---ccceEEEEECC
Confidence 35688999988 4321 1121 222233333333211233442 45667664321 1 23579999999
Q ss_pred CCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCc-eeeecCCC----CcHHHHHH
Q 015095 153 GGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTNKIVD 227 (413)
Q Consensus 153 GG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs-~LGTsR~~----~d~~~iv~ 227 (413)
||||||||+||+++++++...+++.+||||++||+||+++++++|+|+.|+.|+++||+ +|||+|++ ++++++++
T Consensus 79 GG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~i~~ 158 (555)
T PRK07085 79 GGQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNTGGFDMIGSGRTKIETEEQKEACLE 158 (555)
T ss_pred CCCChHHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCeEECCHHHHhHHHhCCChhhhcCCCCCCCCHHHHHHHHH
Confidence 99999999999999998877778899999999999999999999999999999999998 99999985 36899999
Q ss_pred HHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcc--cccccCchhHHHHHHHHHHHHHHhhhc
Q 015095 228 NIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV--IDKSFGFDTAVEEAQRAINAAHVEVES 305 (413)
Q Consensus 228 ~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~g--tD~S~GFdTAv~~~~~~i~~i~~~A~s 305 (413)
+|++++||+||+||||||+++|+.|++++++++++|+|||||||||||+++ +|+|||||||+++++++|++++.+|.|
T Consensus 159 ~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~~~~~~I~~i~~Da~s 238 (555)
T PRK07085 159 TVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMIGNISRDALS 238 (555)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999995 599999999999999999999999999
Q ss_pred cCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCC----CCCC-hhhHHHHHHHHHHh-CCcEEEEEeCCCCcccc
Q 015095 306 VENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPF----YLEG-PGGLFEFIERQLKE-NGHMVIVVAEGAGQEFV 379 (413)
Q Consensus 306 ~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf----~l~~-~~~~~e~i~~r~~~-~~~~vIvvaEGa~~~~~ 379 (413)
+++||||||+|||+|||||++||||+ +||+|||||+++ ++++ .+.+++.|.+|..+ ++|++|||+||+.+...
T Consensus 239 ~~~~~~~VevMGR~aG~LAl~~aLat-~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsEGlie~ip 317 (555)
T PRK07085 239 AKKYWHFIKLMGRSASHIALECALQT-HPNICLISEEVAEKKMSLQDIVHYIASVIADRAAKGKNYGVILIPEGLIEFIP 317 (555)
T ss_pred cCCcEEEEEECCCChHHHHHHHHHhc-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchhcCc
Confidence 88899999999999999999999999 899999999954 4442 12233444555544 67999999999964110
Q ss_pred ------c--------------------------ccCCcc-----------------cccCCCCCcccccH--HHHHHHHH
Q 015095 380 ------A--------------------------QSMPAV-----------------DEKDASGNRLLLDI--GLWLTQKI 408 (413)
Q Consensus 380 ------~--------------------------~~~~~~-----------------~~~Da~Gn~~l~~v--g~~L~~~I 408 (413)
. +.++.. ..+|++||++++++ +++|++.|
T Consensus 318 e~~~li~el~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~~s~~l~~~lp~~i~~qLl~~rD~~Gn~~ls~i~te~lL~~lV 397 (555)
T PRK07085 318 EMKSLIKELNSLLAENESEFKGLDTEAQREYIISKLSPESAKLFKSLPEDIARQLLLDRDPHGNVQVSKIETEKLLIEMV 397 (555)
T ss_pred hHHHHHHHHHHhhhhcccccccccchhhhhhhhhhcCHHHHHHHhhcchhhhhhhccCcCCCCCeeeccccHHHHHHHHH
Confidence 0 001110 14799999999998 89999998
Q ss_pred Hhhh
Q 015095 409 KIQH 412 (413)
Q Consensus 409 ~~~~ 412 (413)
++++
T Consensus 398 ~~~l 401 (555)
T PRK07085 398 KKEL 401 (555)
T ss_pred HHHH
Confidence 8875
No 14
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=100.00 E-value=4.1e-67 Score=551.76 Aligned_cols=323 Identities=24% Similarity=0.346 Sum_probs=261.7
Q ss_pred hhcCCCCCCCCCCCCCC-cccccccccccccChHHHHHHHhccCC-----CCcccccccCCccccccCCCCeeEEEEccC
Q 015095 80 TNFLPDLPSYPNPLKKS-QAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAGPREKVYFKSDEVRACIVTCG 153 (413)
Q Consensus 80 ~~~~p~~p~~~~~l~~n-~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~agpr~~~~~~~~~~~iaIvtsG 153 (413)
..|.|.+|++ |++. +.++ ....+.|..+...-...+.| .+..+|...-.... .+..+||||++||
T Consensus 11 ~~~~p~lp~~---l~~~~~~~~---~~~~~~~~~~~~~~~~~~~fp~~~~~p~~~~~~~~~~~~---~~~~~~IgIl~SG 81 (550)
T cd00765 11 INYTPKLPSV---LKGDFNNIK---IVEGPATSAAGDPDALAKLFPGTYGQPSVAFVPDQDAPS---SAPKLKIGIVLSG 81 (550)
T ss_pred HhcCCCCChh---hcCCccceE---EeecCcccccCCHHHHHHhChhhhCCcceEEeecCCccc---CCCCCEEEEECCC
Confidence 4688999998 5431 1122 22333343333222223444 25567776432111 1456899999999
Q ss_pred CCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCc-eeeecCCC----CcHHHHHHH
Q 015095 154 GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTNKIVDN 228 (413)
Q Consensus 154 G~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs-~LGTsR~~----~d~~~iv~~ 228 (413)
|||||||++|+++++++...+++.+||||++||+||+++++++|+++.++.|+++||+ +|||+|++ +++++++++
T Consensus 82 G~aPGiNnvI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~i~Lt~~~v~~~~~~GGsd~LGs~R~k~~~~e~~~~i~~~ 161 (550)
T cd00765 82 GQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNTGGFDMICSGRTKIETEDQFKQAEET 161 (550)
T ss_pred CCcHhHHHHHHHHHHHHHHhcCCcEEEEEccCHHHhcCCCeEECCHHHHhHHHhCCChhhhcCcCCCCCCHHHHHHHHHH
Confidence 9999999999999999877677899999999999999999999999999999999999 99999985 368999999
Q ss_pred HHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCccc--ccccCchhHHHHHHHHHHHHHHhhhcc
Q 015095 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDTAVEEAQRAINAAHVEVESV 306 (413)
Q Consensus 229 l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gt--D~S~GFdTAv~~~~~~i~~i~~~A~s~ 306 (413)
|++++||+||+||||||+++|++|++++++++++++|||||||||||++++ |+|||||||+++++++|++++.++.|+
T Consensus 162 l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k~~a~~I~ni~~Da~s~ 241 (550)
T cd00765 162 AKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVMRDARST 241 (550)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999985 999999999999999999999999999
Q ss_pred CCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCC-hhh----HHHHHHHHHHh-CCcEEEEEeCCCCccccc
Q 015095 307 ENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG-PGG----LFEFIERQLKE-NGHMVIVVAEGAGQEFVA 380 (413)
Q Consensus 307 ~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~-~~~----~~e~i~~r~~~-~~~~vIvvaEGa~~~~~~ 380 (413)
++||+|||+|||+|||||++||||+ +||+|||||++|+.+. +.+ +++.|++|..+ ++|++|||+||+......
T Consensus 242 ~~~~~~VEvMGR~aG~LAl~~aLat-~p~lilIpE~~~~~~~~L~~v~~~I~~~i~~r~~~gk~~gvIvVsEGlie~ipe 320 (550)
T cd00765 242 GKYWHFVKLMGRSASHIALECALKT-HPNICIISEEVSAQKQTLKNITDYMVDVICKRAELGYNFGVVLVPEGLIEFIPE 320 (550)
T ss_pred CCcEEEEEeCCCchHHHHHHHHHhc-CCCEEEecCcccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCchhhCch
Confidence 8999999999999999999999999 8999999999994331 223 34445555544 579999999998651100
Q ss_pred ------------------------------------------------ccCCc--ccccCCCCCcccccH--HHHHHHHH
Q 015095 381 ------------------------------------------------QSMPA--VDEKDASGNRLLLDI--GLWLTQKI 408 (413)
Q Consensus 381 ------------------------------------------------~~~~~--~~~~Da~Gn~~l~~v--g~~L~~~I 408 (413)
+.+.+ ...+|++||++++++ +++|++.+
T Consensus 321 ~~~Li~el~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~g~~f~~lp~~i~~ql~~~~D~~G~~qls~iete~lL~~lV 400 (550)
T cd00765 321 VKELIAELNEILANEVVEFNGLWKKKLTEQSLKLFDLLPKGVYLPLFIEAIQEQLMLERDPHGNVQVSRIETEKLLIQMV 400 (550)
T ss_pred HHHHHHHHHHHhhhcccchhhhhhhcccHHHHHhhhccccccccccchHHHHHHhhcccCCCCCEeeccchHHHHHHHHH
Confidence 00111 114799999999998 99999999
Q ss_pred Hhhh
Q 015095 409 KIQH 412 (413)
Q Consensus 409 ~~~~ 412 (413)
++++
T Consensus 401 ~~~L 404 (550)
T cd00765 401 ETRL 404 (550)
T ss_pred HHHH
Confidence 8876
No 15
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=100.00 E-value=1.7e-67 Score=521.62 Aligned_cols=242 Identities=33% Similarity=0.540 Sum_probs=215.7
Q ss_pred eEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC-----C
Q 015095 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-----H 220 (413)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~-----~ 220 (413)
||||+||||||||||++||++++++.+ + +.+|||+++||+||+++++++|+|..+++|+++|||+|||||+. +
T Consensus 1 rIaIltsGG~apG~Na~i~~vv~~a~~-~-g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~~ 78 (301)
T TIGR02482 1 KIGILTSGGDAPGMNAAIRAVVRTAIY-H-GFEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGTILGTARCPEFKTEE 78 (301)
T ss_pred CEEEEccCCCcHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCceeccCCCCccCCHH
Confidence 699999999999999999999998864 4 46999999999999999999999999999999999999999984 2
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHHH
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAH 300 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i~ 300 (413)
++++++++|++++||+|++|||||||++|++|+++ +.++|||||||||||+++||+|||||||+++++++|++++
T Consensus 79 ~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~-----~~i~vigiPkTIDNDl~~td~s~GfdTA~~~~~~~i~~i~ 153 (301)
T TIGR02482 79 GRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEE-----GGIPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIR 153 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHh-----hCCCEEeecccccCCCcCcccCcChhHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999986 3688999999999999999999999999999999999999
Q ss_pred HhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-CCcEEEEEeCC--CCc-
Q 015095 301 VEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEG--AGQ- 376 (413)
Q Consensus 301 ~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~-~~~~vIvvaEG--a~~- 376 (413)
++|.|+ +||||||+|||+|||||++++||+ +||+|||||+||+++ +++++|++|+++ ++|++|||||| ++.
T Consensus 154 ~ta~s~-~rv~ivEvMGR~~G~lAl~~~la~-gad~iliPE~~~~~~---~l~~~i~~r~~~g~~~~iIvvaEG~~~~~~ 228 (301)
T TIGR02482 154 DTATSH-ERAFVIEVMGRHAGDLALYSGIAT-GAEIIIIPEFDYDID---ELIQRLKEQHEAGKKHSIIIVAEGNIVGSA 228 (301)
T ss_pred HHhhcC-CCEEEEEeCCCCHHHHHHHHHHHc-CCCEEEECCCCCCHH---HHHHHHHHHHHcCCCeEEEEEeCCCcCCcH
Confidence 999997 579999999999999999999999 799999999999987 799999999987 78999999999 532
Q ss_pred ccccccCCc----ccccCCCCCccccc
Q 015095 377 EFVAQSMPA----VDEKDASGNRLLLD 399 (413)
Q Consensus 377 ~~~~~~~~~----~~~~Da~Gn~~l~~ 399 (413)
..+.+.+++ ..+....||.|-|+
T Consensus 229 ~~l~~~l~~~~g~~~r~~~lG~~qRgg 255 (301)
T TIGR02482 229 KEVAKKIEEATGIETRVTVLGHTQRGG 255 (301)
T ss_pred HHHHHHHHHhcCCeeEEeecChhhcCC
Confidence 122222221 11234558888776
No 16
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=3.4e-66 Score=549.68 Aligned_cols=287 Identities=21% Similarity=0.350 Sum_probs=251.8
Q ss_pred Ccccccc---cCCccccccCCCCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhh
Q 015095 125 RGVHFRR---AGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKV 201 (413)
Q Consensus 125 r~~~F~~---agpr~~~~~~~~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~ 201 (413)
+..+|.. ++|+.+.++++..+|||||+|||||||||+||+++++++...+++.+||||++||+||+++++++|+++.
T Consensus 57 p~~~~~~~~~~~~~~~~~~~~~~~rIgIv~sGG~APG~nnvI~Gvv~~~~~~~~~~~V~G~~~G~~GLl~~~~v~Lt~~~ 136 (610)
T PLN03028 57 PLAHFLRATAKVPDAQVITEHPAVRVGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFAQKTLEITDDV 136 (610)
T ss_pred cceEEecccccCccccccCCCcccEEEEEccCCCCccHHHHHHHHHHHHHHhCCCcEEEEEccCHHHhcCCCeEECCHHH
Confidence 5567776 4588888888888999999999999999999999999998777788999999999999999999999999
Q ss_pred HhhhhhcCCc-eeeecCCC----CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCC
Q 015095 202 VNDIHKRGGT-ILRTSRGG----HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (413)
Q Consensus 202 V~~i~~~GGs-~LGTsR~~----~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI 276 (413)
++.|+++||+ +|||+|.+ +++++++++|++++||+||+||||||+++|.+|++++++++.+++|||||||||||+
T Consensus 137 v~~~~n~GG~~iLGSsR~~l~~~e~~~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDL 216 (610)
T PLN03028 137 LSTYKNQGGYDLLGRTKDQIRTTEQVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDL 216 (610)
T ss_pred HHHHHhcCCchhccCcCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeeeCCC
Confidence 9999999998 89999974 368999999999999999999999999999999999999999999999999999999
Q ss_pred c--ccccccCchhHHHHHHHHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCC-CCC---CC-h
Q 015095 277 A--VIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESP-FYL---EG-P 349 (413)
Q Consensus 277 ~--gtD~S~GFdTAv~~~~~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~p-f~l---~~-~ 349 (413)
+ +||+|||||||+++++++|++++.+|.|+++||||||+|||+|||||++||||+ +||+|||||+. ++. .+ .
T Consensus 217 ~~~~td~s~GFdTA~k~~ae~I~ni~~dA~S~~~~~~~VevMGR~aG~LAl~~aLat-~pniilI~EE~~~~~~tL~~iv 295 (610)
T PLN03028 217 KNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECALQS-HPNMVILGEEVAASKLTLFDIT 295 (610)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEEeCCcchHHHHHHHHHhc-CCCEEEecCcccccccccchHH
Confidence 8 899999999999999999999999999998899999999999999999999999 79999999964 332 32 2
Q ss_pred hhHHHHHHHHHHh-CCcEEEEEeCCCCccccc------c----------------cCC---------------c--cccc
Q 015095 350 GGLFEFIERQLKE-NGHMVIVVAEGAGQEFVA------Q----------------SMP---------------A--VDEK 389 (413)
Q Consensus 350 ~~~~e~i~~r~~~-~~~~vIvvaEGa~~~~~~------~----------------~~~---------------~--~~~~ 389 (413)
+.+++.|++|+++ ++|++|||+||+.+.... | .++ . ...+
T Consensus 296 ~~i~~~I~~r~~~gk~~gvIvVsEGlie~ipe~~~li~el~~~~~~g~~~~~~~~~ls~~~~~l~~~lP~~i~~qLl~~~ 375 (610)
T PLN03028 296 KQICDAVQARAEQDKNHGVILIPEGLIESIPEVYALLQEIHGLLKQGVSVDNISSQLSPWASALFEFLPPFIKKQLLLHP 375 (610)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEeCCccccCchHHHHHHHHHHHHhcCcchhhhhhhcCHHHHHHHhhccHHHHHHHhhcc
Confidence 4678888888854 689999999998643111 0 000 0 0147
Q ss_pred CCCCCccccc--HHHHHHHHHHhhh
Q 015095 390 DASGNRLLLD--IGLWLTQKIKIQH 412 (413)
Q Consensus 390 Da~Gn~~l~~--vg~~L~~~I~~~~ 412 (413)
|++||+++++ .+++|++.+++++
T Consensus 376 D~~G~~qls~i~te~lL~~lV~~eL 400 (610)
T PLN03028 376 ESDDSAQLSQIETEKLLAQLVETEM 400 (610)
T ss_pred CCCCCeeecchhHHHHHHHHHHHHH
Confidence 9999999999 7788888888765
No 17
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=100.00 E-value=2.4e-66 Score=516.82 Aligned_cols=217 Identities=34% Similarity=0.538 Sum_probs=204.9
Q ss_pred eEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC-----C
Q 015095 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-----H 220 (413)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~-----~ 220 (413)
||||+||||||||||++||++++.+.+ + +.+|||+++||+||+++++++|+|+.++.|+++|||+|||||+. +
T Consensus 2 ~IaIltsGG~apGmNa~i~~vv~~a~~-~-g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~~ 79 (317)
T cd00763 2 RIGVLTSGGDAPGMNAAIRGVVRSAIA-E-GLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGTFLGSARFPEFKDEE 79 (317)
T ss_pred EEEEEccCCCcHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCeeeccCCCCccCCHH
Confidence 899999999999999999999998864 3 46999999999999999999999999999999999999999984 2
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHHH
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAH 300 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i~ 300 (413)
++++++++|++++||+|++||||||+++|++|+++ .++||||||||||||++||+|||||||++++++++++++
T Consensus 80 ~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~------~i~vigiPkTIDNDi~gtd~t~Gf~TA~~~~~~~i~~i~ 153 (317)
T cd00763 80 GQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH------GFPCVGLPGTIDNDIPGTDYTIGFDTALNTVVEAIDRIR 153 (317)
T ss_pred HHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHc------CCCEEEecccccCCCCCCccCCCHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999885 378999999999999999999999999999999999999
Q ss_pred HhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-CCcEEEEEeCCCC
Q 015095 301 VEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAG 375 (413)
Q Consensus 301 ~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~-~~~~vIvvaEGa~ 375 (413)
++|.|+ +||||||+|||+|||||+++|||+ +||+|||||.||+++ ++++.|++++++ ++|++||||||+.
T Consensus 154 ~ta~s~-~rv~ivEvMGR~~G~LA~~~ala~-ga~~iliPE~~~~~~---~~~~~i~~~~~~g~~~~vivvaEG~~ 224 (317)
T cd00763 154 DTSSSH-QRISVVEVMGRHCGDIALAAGIAG-GAEFIVIPEAEFDRE---EVANRIKAGIERGKKHAIVVVAEGVY 224 (317)
T ss_pred HHHhcC-CCEEEEEeCCCChHHHHHHHHHHc-CCCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCCC
Confidence 999986 689999999999999999999999 799999999999987 899999999987 7899999999986
No 18
>PRK03202 6-phosphofructokinase; Provisional
Probab=100.00 E-value=1.1e-65 Score=512.49 Aligned_cols=242 Identities=35% Similarity=0.503 Sum_probs=216.6
Q ss_pred eeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCC----
Q 015095 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH---- 220 (413)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~---- 220 (413)
.||||+||||||||||++|+++++++.. . +.+|||+++||+||+++++++|+|+.+++|.++|||+|||+|+..
T Consensus 2 k~i~Il~sGG~apG~Na~i~~~~~~~~~-~-g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~ 79 (320)
T PRK03202 2 KRIGVLTSGGDAPGMNAAIRAVVRTAIS-E-GLEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGTILGSARFPEFKDE 79 (320)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHHH-C-CCeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCcccccCCCCCcCCH
Confidence 4899999999999999999999998864 3 579999999999999999999999999999999999999999742
Q ss_pred -cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHH
Q 015095 221 -DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (413)
Q Consensus 221 -d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i 299 (413)
++++++++|++++||+|++||||||+++|++|+++ .++|||||||||||+++||+|||||||+++++++|+++
T Consensus 80 ~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e~------~i~vigiPkTIDNDl~gtd~s~Gf~TA~~~~~~~i~~l 153 (320)
T PRK03202 80 EGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEH------GIPVIGLPGTIDNDIAGTDYTIGFDTALNTAVEAIDRL 153 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhc------CCcEEEecccccCCCCCCccCcCHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999963 58899999999999999999999999999999999999
Q ss_pred HHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-CCcEEEEEeCCCCc--
Q 015095 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQ-- 376 (413)
Q Consensus 300 ~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~-~~~~vIvvaEGa~~-- 376 (413)
+++|.|+ +||||||+|||+|||||+++|||+ +||+|||||.||+++ ++++.|++|+++ ++|++||+|||+.+
T Consensus 154 ~~~a~s~-~rv~iVEvMGR~~G~LAl~~ala~-~a~~iliPE~~~~~~---~l~~~i~~r~~~g~~~~vivvsEg~~~~~ 228 (320)
T PRK03202 154 RDTASSH-ERVFIVEVMGRHAGDLALHAGIAG-GAEVILIPEVPFDIE---ELCAKIKKGRERGKKHAIIVVAEGVMPAE 228 (320)
T ss_pred HHHHhcc-CCEEEEEECCCChHHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHhcCCcEEEEEeCCCCCHH
Confidence 9999997 589999999999999999999999 899999999999987 799999999988 78999999999863
Q ss_pred ---ccccccCCcccccCCCCCccccc
Q 015095 377 ---EFVAQSMPAVDEKDASGNRLLLD 399 (413)
Q Consensus 377 ---~~~~~~~~~~~~~Da~Gn~~l~~ 399 (413)
+++.+.+....+...-||.|-|+
T Consensus 229 ~l~~~i~~~~~~~~r~~~lG~~qRgg 254 (320)
T PRK03202 229 ELAKEIEERTGLETRVTVLGHIQRGG 254 (320)
T ss_pred HHHHHHHHHhCCceEEcccchhhcCC
Confidence 12222111112345568888876
No 19
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=100.00 E-value=7e-66 Score=506.26 Aligned_cols=244 Identities=37% Similarity=0.539 Sum_probs=213.4
Q ss_pred eeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC-----
Q 015095 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG----- 219 (413)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~----- 219 (413)
.||||+||||||||||++|+++++++.+ .+.+|||+++||+||+++++++|+|+.+++|.++|||+|||+|++
T Consensus 1 KrI~Il~sGG~apG~Na~i~~~v~~a~~--~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~lgtsR~~~~~~~ 78 (282)
T PF00365_consen 1 KRIAILTSGGDAPGMNAAIRGVVRYAIR--RGWEVYGIRNGFEGLLNGDIIELTWEDVRGIINQGGTILGTSRFKPFKDP 78 (282)
T ss_dssp EEEEEEEESS--TTHHHHHHHHHHHHHH--TTSEEEEETTHHHHHHHCTEEEECGGGGTTGGGSSSSTTTBBBSSGGGSH
T ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHh--cCCEEEEEEccCccceeeeEEeecccCccccccCCCcEeCcccCccccch
Confidence 4899999999999999999999998763 457999999999999999999999999999999999999999985
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHH
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i 299 (413)
++.++++++|++++||+|++|||||||++|++|++++. ++||+||||||||+|+||+|||||||+++++++|+++
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~-----i~vigiPkTIDNDi~gtd~siGf~TA~~~~~~~i~~i 153 (282)
T PF00365_consen 79 EGRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEFG-----IPVIGIPKTIDNDIPGTDYSIGFDTAVNYIAEAIDNI 153 (282)
T ss_dssp HHHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHHH-----SEEEEEEEETTSSCTTSSS-BTHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCc-----eEEEEEeccccCCcCCCCCCcccCchhHHHHHHHHHH
Confidence 23578999999999999999999999999999998764 8899999999999999999999999999999999999
Q ss_pred HHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-CCcEEEEEeCCCCc--
Q 015095 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQ-- 376 (413)
Q Consensus 300 ~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~-~~~~vIvvaEGa~~-- 376 (413)
+++|.|+ +||||||+|||+|||||++++||+ +||+|||||.||+++ .+++.|++++++ +++++||||||+..
T Consensus 154 ~~~a~s~-~rv~ivEvmGr~~G~LAl~~ala~-~a~~ilipE~~~~~~---~~~~~i~~~~~~~k~~~iVvvsEG~~~~~ 228 (282)
T PF00365_consen 154 KTTARSH-NRVFIVEVMGRNAGWLALAAALAT-GADLILIPEEPFDLD---ELLDDIKKRYERGKRYGIVVVSEGAKDGQ 228 (282)
T ss_dssp HHHHHHS-TEEEEEEESSTTSTHHHHHHHHHH-TSSEEEBTTSHHHHH---HHHHHHHHHHHTTSSEEEEEEETTSBSSH
T ss_pred HHhhccc-CCceEEEeCCCCcCHHHHHHHhcc-CCCEEEEeccccchH---HHHHHhhhhhcccCceEEEEecccccccc
Confidence 9999986 689999999999999999999999 799999999998777 899999999876 46899999999976
Q ss_pred ccccccC----Cc----ccccCCCCCcccccH
Q 015095 377 EFVAQSM----PA----VDEKDASGNRLLLDI 400 (413)
Q Consensus 377 ~~~~~~~----~~----~~~~Da~Gn~~l~~v 400 (413)
....+.+ .+ ..+....||.|.|+.
T Consensus 229 ~i~~~~~~~~~~~~~~~~~r~~~lGh~Qrgg~ 260 (282)
T PF00365_consen 229 PISSEFIKELLEEGLGFDVRVTILGHLQRGGT 260 (282)
T ss_dssp BHHHHHHHHHHHHTTTSEEEEEE-GGGGGTSS
T ss_pred cccccccccccccccccceeecccchhhcCCC
Confidence 2111111 11 112355699999984
No 20
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=100.00 E-value=8e-65 Score=535.61 Aligned_cols=322 Identities=22% Similarity=0.300 Sum_probs=257.9
Q ss_pred hhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC-----CCcccccccC-CccccccCCCCeeEEEEcc
Q 015095 79 LTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG-PREKVYFKSDEVRACIVTC 152 (413)
Q Consensus 79 l~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag-pr~~~~~~~~~~~iaIvts 152 (413)
-+.|.|.+|.+ |++ .+. ....+.+..+...-...+.| .+...|.+.. +..+ .+...|||||+|
T Consensus 36 r~~~~p~lp~~---l~~--~~~---~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~---~~~~~~IGIv~s 104 (568)
T PLN02251 36 RIDHALPLPSV---LKG--PFK---IVDGPPSSAAGNPEEIAKLFPNLFGQPSVMLVPSQADALS---SDQKLKIGVVLS 104 (568)
T ss_pred HHhCCCCCChh---hcC--ceE---EEecCcccccCCHHHHHHhChHhhCCceEEEeeccCcccc---ccccceEEEECc
Confidence 35688999998 544 122 12222333322211123334 2556676622 1111 134579999999
Q ss_pred CCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCc-eeeecCCC----CcHHHHHH
Q 015095 153 GGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTNKIVD 227 (413)
Q Consensus 153 GG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs-~LGTsR~~----~d~~~iv~ 227 (413)
||||||||+||+++++++...+++.+||||++||+||+++++++|+++.++.|+++||+ +|||+|++ ++++++++
T Consensus 105 GG~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dlLGS~R~k~~~~e~~~~~~~ 184 (568)
T PLN02251 105 GGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEE 184 (568)
T ss_pred CCCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceEecccCCCcCCHHHHHHHHH
Confidence 99999999999999999877677889999999999999999999999999999999998 99999984 46899999
Q ss_pred HHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccc--cccCchhHHHHHHHHHHHHHHhhhc
Q 015095 228 NIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID--KSFGFDTAVEEAQRAINAAHVEVES 305 (413)
Q Consensus 228 ~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD--~S~GFdTAv~~~~~~i~~i~~~A~s 305 (413)
+|++++||+||+||||||+++|..|++++++.+.+|+|||||||||||++++| +|||||||+++++++|++++.+|.|
T Consensus 185 ~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k~~a~~I~ni~~da~S 264 (568)
T PLN02251 185 TATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNVMIDARS 264 (568)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999 6999999999999999999999999
Q ss_pred cCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCC-hh----hHHHHHHHHHHh-CCcEEEEEeCCCCccc-
Q 015095 306 VENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG-PG----GLFEFIERQLKE-NGHMVIVVAEGAGQEF- 378 (413)
Q Consensus 306 ~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~-~~----~~~e~i~~r~~~-~~~~vIvvaEGa~~~~- 378 (413)
++++++|||+|||+|||||++||||+ +||+|||||++++-+. +. .+++.|++|... ++|++|||+||+-...
T Consensus 265 ~~k~~~~VevMGR~aG~LAL~~aLat-~pniilIpEe~~~~~~~L~~I~~~I~~~I~~R~~~gk~~gvIlVsEGlie~ip 343 (568)
T PLN02251 265 TGKYYHFVRLMGRAASHITLECALQT-HPNITIIGEEVAAKKLTLKNVTDYIVDVICKRAELGYNYGVILIPEGLIDFIP 343 (568)
T ss_pred hCCEEEEEEeCCCchHHHHHHHHHhh-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCchhhCc
Confidence 98888999999999999999999999 8999999999665431 32 344555666554 5799999999993110
Q ss_pred -----ccc------------------cCC---------------c--ccccCCCCCccccc--HHHHHHHHHHhhh
Q 015095 379 -----VAQ------------------SMP---------------A--VDEKDASGNRLLLD--IGLWLTQKIKIQH 412 (413)
Q Consensus 379 -----~~~------------------~~~---------------~--~~~~Da~Gn~~l~~--vg~~L~~~I~~~~ 412 (413)
+.+ .++ + ...+|++||+++++ .+++|++.+++++
T Consensus 344 e~~~li~el~~~l~~~~~~~~~~~~~~ls~~~~~lf~~lP~~i~~qll~~rD~~G~~qls~Iete~lL~~lV~~~L 419 (568)
T PLN02251 344 EVQHLIAELNEILAHDVVDEEGHWKKKLKPQSLQLFDFLPHAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETEL 419 (568)
T ss_pred hHHHHHHHHHHHhhhcccccchhhhhhCCHHHHHHHHhCcHHHHHHhccccCCCCCeeecccHHHHHHHHHHHHHH
Confidence 000 000 0 12479999999999 8899998888765
No 21
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-64 Score=508.33 Aligned_cols=224 Identities=38% Similarity=0.557 Sum_probs=204.7
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCC---
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH--- 220 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~--- 220 (413)
..||||+||||||||||+|||++|+++.. + +.+||||++||+||+++++++|+|+.++.|+++|||+|||+|.++
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~-~-g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssR~~~~~~ 79 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIK-E-GLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFKT 79 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHH-c-CCEEEEEecchhhhcCCcceeccccchhHHHhcCCeEEeeCCCCCccc
Confidence 35999999999999999999999999974 3 789999999999999999999999999999999999999999852
Q ss_pred --cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHH
Q 015095 221 --DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINA 298 (413)
Q Consensus 221 --d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~ 298 (413)
..++++++|++++||+|++||||||+++|..|+|+. +++|||||||||||+++||+|||||||++++++++++
T Consensus 80 ~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~-----~i~vVGvPkTIDNDi~~td~tiGfdTA~~~~~eaid~ 154 (347)
T COG0205 80 EEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG-----GIPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDN 154 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhc-----CCcEEecCCCccCCCcccccCccHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999874 3889999999999999999999999999999999999
Q ss_pred HHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHH--hCCcEEEEEeCCCCc
Q 015095 299 AHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLK--ENGHMVIVVAEGAGQ 376 (413)
Q Consensus 299 i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~--~~~~~vIvvaEGa~~ 376 (413)
++.+++|| +|++|||+|||+|||||++||||+ +||+|+|||.+|++ ...+++..++.+.+ .+.|++|+++||+..
T Consensus 155 l~dtassh-~r~~iveVMGR~aG~lAl~aglA~-~a~~ilipE~~~~~-~i~~~~~~i~~~~~~~gk~~~iIvvaEG~~~ 231 (347)
T COG0205 155 LRDTASSH-ERIFIVEVMGRHAGWLALAAGLAT-GADIILIPEEPADL-IIEELIAEIKAKREARGKKHAIIVVAEGAID 231 (347)
T ss_pred HHHHHhCc-CCEEEEEecCcChhHHHHHHHHhc-CCCEEEecCccccc-hHHHHHHHHHHHHHHhCCCceEEEEcccccc
Confidence 99777775 789999999999999999999999 79999999999988 23367777777544 357899999999876
Q ss_pred c
Q 015095 377 E 377 (413)
Q Consensus 377 ~ 377 (413)
.
T Consensus 232 ~ 232 (347)
T COG0205 232 Q 232 (347)
T ss_pred c
Confidence 3
No 22
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=8.1e-63 Score=548.34 Aligned_cols=322 Identities=24% Similarity=0.322 Sum_probs=257.6
Q ss_pred hhcCCCCCCCCCCCCCCcccccccccccccChHHHHH--HHhccCC-----CCcccccccCC--ccccccCCCCeeEEEE
Q 015095 80 TNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQN--IVIQKDS-----PRGVHFRRAGP--REKVYFKSDEVRACIV 150 (413)
Q Consensus 80 ~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~--~~~~~~~-----~r~~~F~~agp--r~~~~~~~~~~~iaIv 150 (413)
..|.|.+|++ |++ .+++. ..+.|..+... -...+.| .+...|..+.. ..... ....|||||
T Consensus 39 ~~~~p~lp~~---l~~--~~~~~---~~~~~~~~~~~~~~~i~~~fp~t~~~p~~~~~~~~~~~~~~~~--~~~krIGIL 108 (1328)
T PTZ00468 39 RRWEPCLPHI---LRS--PLSIK---EVSAFEGMGKMERSDVSSYFPLTSGNSLVKFEAISDGSSSWKK--FPARRIGVV 108 (1328)
T ss_pred HhcCCCCChH---hcC--ceEEe---ecCCcccccCcchHHHHHhCccccCCcceEEeecCCCcccccc--ccCCEEEEE
Confidence 4588999998 543 22221 22333332222 1122334 35566766321 11111 133799999
Q ss_pred ccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCc-eeeecCCC----CcHHHH
Q 015095 151 TCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG----HDTNKI 225 (413)
Q Consensus 151 tsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs-~LGTsR~~----~d~~~i 225 (413)
||||||||||+||+++++++...+++.+||||++||+||+++++++|++..|+.|+++||+ +|||+|++ ++++++
T Consensus 109 tSGGdAPG~NnvI~gv~~~l~~~~~~~~VyGf~~G~~GLl~~~~ieLt~~~V~~i~n~GGt~iLGS~R~kl~~ee~~~~~ 188 (1328)
T PTZ00468 109 LSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDDINGILNQGGFNIICSGRHKIETEEQMRAS 188 (1328)
T ss_pred CcCCCchhHHHHHHHHHHHHHHhcCCCEEEEEccChHHhcCCCeEeCCHHHHHHHHhCCCcccccCcCCCCCCHHHHHHH
Confidence 9999999999999999998876667789999999999999999999999999999999997 99999985 368999
Q ss_pred HHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcc--cccccCchhHHHHHHHHHHHHHHhh
Q 015095 226 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV--IDKSFGFDTAVEEAQRAINAAHVEV 303 (413)
Q Consensus 226 v~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~g--tD~S~GFdTAv~~~~~~i~~i~~~A 303 (413)
+++|++++||+||+||||||+++|.+|++++++++++++|||||||||||+++ ||+|||||||+++++++|++++.+|
T Consensus 189 le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdTA~k~iae~I~nl~~~A 268 (1328)
T PTZ00468 189 LEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQIGSIMDAI 268 (1328)
T ss_pred HHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999985 8999999999999999999999999
Q ss_pred hccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCC-hhh----HHHHHHHHHHh-CCcEEEEEeCCCCcc
Q 015095 304 ESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG-PGG----LFEFIERQLKE-NGHMVIVVAEGAGQE 377 (413)
Q Consensus 304 ~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~-~~~----~~e~i~~r~~~-~~~~vIvvaEGa~~~ 377 (413)
.|+++||||||+|||+|||||++||||+ +||+|||||++++-+. +++ +++.|.+|++. ++|++|||+||+.+.
T Consensus 269 ~S~~~rv~~VEVMGR~AGhLAL~~ALAt-ganiiLIPEe~~~k~~tL~dIvd~Iv~~I~kR~~~Gk~ygIIvVsEGlief 347 (1328)
T PTZ00468 269 KTEGYGYYFVRLMGRSASHITLECGLQT-RANMILIGEEIKEENRSLMSIVDEIVEMILKRDSLGKKHGIVLLPEGLIEF 347 (1328)
T ss_pred hhcCCeEEEEEeCCcchHHHHHHHHHhc-CCCEEEecCcCccchhhhhHHHHHHHHHHHHHHHcCCCcEEEEEcCCcccc
Confidence 9988899999999999999999999999 8999999999987432 223 44555555544 579999999998621
Q ss_pred c----------------------ccccC---------------Ccc--cccCCCCCcccccHH--HHHHHHHHhhh
Q 015095 378 F----------------------VAQSM---------------PAV--DEKDASGNRLLLDIG--LWLTQKIKIQH 412 (413)
Q Consensus 378 ~----------------------~~~~~---------------~~~--~~~Da~Gn~~l~~vg--~~L~~~I~~~~ 412 (413)
. +.+.+ +.+ ..+|++||+++++++ ++|++.+++++
T Consensus 348 Ipe~~~Li~eln~~l~~~~~g~~i~~~Ls~~~~~lf~~lP~~i~~qLl~~rD~hGnvqls~I~tEklLa~lV~~~L 423 (1328)
T PTZ00468 348 IPEFETLIKELNLILLKTNDRKQIIDSLSQEMKTLFLELPSDVQNQLLLERDPHGNVQVAKIATEELLVHMAKEKL 423 (1328)
T ss_pred ccHHHHHHHHHHHhhccccchhhhhhhcCHHHHHHHHhCcHHHHHHhccccCCCCCEeeccccHHHHHHHHHHHHH
Confidence 1 11000 000 247999999999988 99999998876
No 23
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=1.3e-62 Score=533.23 Aligned_cols=229 Identities=25% Similarity=0.381 Sum_probs=204.1
Q ss_pred CCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCC--CeeeCChhhHhhhhhcCCceeeecCCCC
Q 015095 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGGH 220 (413)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~--~~~~Lt~~~V~~i~~~GGs~LGTsR~~~ 220 (413)
.+.||||+||||||||||++||++|+.+. +.+.+||||++||+||+++ ++.+|+|++|++|+++|||+|||+|+.+
T Consensus 2 ~~k~IaIltSGGdapGmNaaIravvr~a~--~~g~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT~LGTsR~~~ 79 (762)
T cd00764 2 AGKAIAVLTSGGDAQGMNAAVRAVVRMGI--YVGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGTIIGSARCKE 79 (762)
T ss_pred CCcEEEEEccCCCchhHhHHHHHHHHHHH--HCCCEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCCcccCCCCCc
Confidence 35699999999999999999999999875 3467999999999999998 7899999999999999999999999853
Q ss_pred -----cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHH-----------------HHHHHcCCCceeeeeeccccCCCcc
Q 015095 221 -----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIY-----------------KEVEKRGLQVAVAGIPKTIDNDIAV 278 (413)
Q Consensus 221 -----d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~-----------------e~~~~~~~~i~vvgIPkTIDNDI~g 278 (413)
++++++++|++++||+||+||||||+++|++|. ++.++++..++|||||||||||+++
T Consensus 80 f~~~e~~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~g 159 (762)
T cd00764 80 FREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCG 159 (762)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCC
Confidence 468999999999999999999999999999764 3344455678999999999999999
Q ss_pred cccccCchhHHHHHHHHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHH
Q 015095 279 IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIER 358 (413)
Q Consensus 279 tD~S~GFdTAv~~~~~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~ 358 (413)
||+|||||||++.++++|++++++|.|| +|+||||+|||+|||||+++|||+ +||+|||||.||+.+.++.+++.+++
T Consensus 160 TD~TiGfdTAl~~i~eaId~i~~tA~Sh-~R~fVVEvMGR~~G~LAl~aglA~-gAd~ilIPE~p~~~~~~~~i~~~l~~ 237 (762)
T cd00764 160 TDMTIGTDSALHRICEVVDAITTTAQSH-QRTFVLEVMGRHCGYLALVSGLAT-GADWIFIPERPPEDGWEDQMCRRLSE 237 (762)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHhc-CCEEEEEECCCCchHHHHHHHhcc-CCCEEEecCCCCchhHHHHHHHHHHH
Confidence 9999999999999999999999999998 579999999999999999999999 79999999999993334455566655
Q ss_pred HHHh-CCcEEEEEeCCCC
Q 015095 359 QLKE-NGHMVIVVAEGAG 375 (413)
Q Consensus 359 r~~~-~~~~vIvvaEGa~ 375 (413)
+.+. +++++||||||+.
T Consensus 238 ~~~~gk~~~iIVVaEGa~ 255 (762)
T cd00764 238 HRSRGKRLNIIIVAEGAI 255 (762)
T ss_pred HHhcCCCcEEEEEeCCCc
Confidence 5444 4789999999984
No 24
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=4.8e-62 Score=529.97 Aligned_cols=226 Identities=31% Similarity=0.462 Sum_probs=205.6
Q ss_pred eeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCC--CeeeCChhhHhhhhhcCCceeeecCCCC--
Q 015095 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGGH-- 220 (413)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~--~~~~Lt~~~V~~i~~~GGs~LGTsR~~~-- 220 (413)
.||||+||||||||||++||++|+.+.+ .+.+||||++||+||+++ ++++|+|+.|++|+++|||+|||+|+..
T Consensus 1 krIaIltsGGdapGmNaaIravv~~a~~--~g~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR~~~~~ 78 (745)
T TIGR02478 1 KRIGVLTSGGDAQGMNAAVRAVVRMAIY--VGCRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGTIIGTARCKEFR 78 (745)
T ss_pred CEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCceecCCCCCccc
Confidence 3899999999999999999999998763 357999999999999999 9999999999999999999999999853
Q ss_pred ---cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHH-----------------HHHHcCCCceeeeeeccccCCCcccc
Q 015095 221 ---DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK-----------------EVEKRGLQVAVAGIPKTIDNDIAVID 280 (413)
Q Consensus 221 ---d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e-----------------~~~~~~~~i~vvgIPkTIDNDI~gtD 280 (413)
+.++++++|++++||+|++||||||+++|+.|++ +..+++..++|||||||||||+++||
T Consensus 79 ~~~~~~~~~~~L~~~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gTd 158 (745)
T TIGR02478 79 ERPGRLKAARNLIKRGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTD 158 (745)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCCc
Confidence 4589999999999999999999999999997765 33455667899999999999999999
Q ss_pred cccCchhHHHHHHHHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHH
Q 015095 281 KSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQL 360 (413)
Q Consensus 281 ~S~GFdTAv~~~~~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~ 360 (413)
+|||||||+++++++||+++++|.|| +|+||||+|||+|||||+++|||+ +||+|||||.||+.+.++++++.++++.
T Consensus 159 ~TiGfdTA~~~i~~aid~i~~ta~Sh-~R~fvvEvMGR~~G~LAl~aalA~-gad~iliPE~~~~~~~~~~i~~~l~~~~ 236 (745)
T TIGR02478 159 MTIGADSALHRICEAIDAISSTAQSH-QRAFVVEVMGRHCGYLALMAAIAT-GADYVFIPERPPEEGWEDQLCHKLKRNR 236 (745)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhcc-CCEEEEEEcCccccHHHHHHHhcc-CCCEEEecCCCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999997 589999999999999999999999 8999999999999765567777777654
Q ss_pred Hh-CCcEEEEEeCCC
Q 015095 361 KE-NGHMVIVVAEGA 374 (413)
Q Consensus 361 ~~-~~~~vIvvaEGa 374 (413)
+. +++++||||||+
T Consensus 237 ~~gk~~~iIvvaEG~ 251 (745)
T TIGR02478 237 KAGKRKNIVIVAEGA 251 (745)
T ss_pred HcCCCcEEEEEeCCc
Confidence 44 578999999998
No 25
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2.7e-61 Score=539.23 Aligned_cols=233 Identities=30% Similarity=0.443 Sum_probs=210.4
Q ss_pred CCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCc-eeeecCCC--
Q 015095 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-ILRTSRGG-- 219 (413)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs-~LGTsR~~-- 219 (413)
..+||||++|||||||||++|+++++++....++++||||++||+||+++++++|+|..+++|+++||+ +|||+|..
T Consensus 176 ~~~rIgIl~SGGpAPGmNavI~Gvv~~a~~~~~g~~VyG~~~G~~GLl~~~~veLt~~~V~~~~n~GGs~iLGSgR~k~~ 255 (1419)
T PTZ00287 176 NVLKIGIILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRFRNLGGFNMLWSGRGKVR 255 (1419)
T ss_pred CceEEEEEccCCCcHhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHHhhHHhCCChhHhhCCCCCCC
Confidence 447999999999999999999999998866566789999999999999999999999999999999997 79999974
Q ss_pred --CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCc--ccccccCchhHHHHHHHH
Q 015095 220 --HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRA 295 (413)
Q Consensus 220 --~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~--gtD~S~GFdTAv~~~~~~ 295 (413)
+++++++++|++++||+||+||||||+++|++|++++++.+++++|||||||||||++ +||+|||||||+++++++
T Consensus 256 ~~e~~~ki~e~lkkl~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTIDNDL~~~gTD~S~GFDTA~n~iae~ 335 (1419)
T PTZ00287 256 NKDDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEV 335 (1419)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeecCCCCCCCCCcCCCHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCC-hhhHHHH----HHHHHHh-CCcEEEE
Q 015095 296 INAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG-PGGLFEF----IERQLKE-NGHMVIV 369 (413)
Q Consensus 296 i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~-~~~~~e~----i~~r~~~-~~~~vIv 369 (413)
|++++.++.++++++||||+|||+|||||++||||+ +||+|||||++|+.+. +++++++ +.+|... ++|+|||
T Consensus 336 I~ni~~D~~Ss~~~~~VVEVMGR~AG~LAl~~aLAt-gAdlilIPEe~~~~~~~L~dI~~~Iv~~I~kR~~~gk~~gVIv 414 (1419)
T PTZ00287 336 IGNLCTDVKTGHNVYHVVRVMGRSASHVVLECALQT-RPNIVLIGEEVEKENLSLKDIVSNIVNTILKRRSLNKNYGVIL 414 (1419)
T ss_pred HHHHHHHHHHhCCeEEEEEECCCcchHHHHHHHHhc-CCCEEEecCcccccCCCHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 999999888877889999999999999999999999 8999999998654431 3354444 4444433 5799999
Q ss_pred EeCCCCc
Q 015095 370 VAEGAGQ 376 (413)
Q Consensus 370 vaEGa~~ 376 (413)
|+||+.+
T Consensus 415 VsEGlie 421 (1419)
T PTZ00287 415 IPEGLIE 421 (1419)
T ss_pred EeCCcch
Confidence 9999865
No 26
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2.9e-55 Score=490.91 Aligned_cols=230 Identities=18% Similarity=0.250 Sum_probs=207.1
Q ss_pred CCCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCcee-eecCCC-
Q 015095 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTIL-RTSRGG- 219 (413)
Q Consensus 142 ~~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~L-GTsR~~- 219 (413)
+.++|||||||||+|||||+|||++++++...++ .++| .+||.||+++++++|+.+.|++|+++||++| ||+|..
T Consensus 834 ~~~~rIGVLtSGGdAPG~NnVIrgvv~~a~~~~g--~~~g-f~G~~GLl~~~~i~Lt~~~V~~i~n~GGtiLlgssR~~~ 910 (1419)
T PTZ00287 834 SFEIKIGIVFLSRQAPGAMNVLCGLYRRLKLLKG--VCIA-FYGLYGLLNNKYIIIDDDNIAKHVNQGGLELTGNSPEHS 910 (1419)
T ss_pred cCCcEEEEECcCCCcHhHHHHHHHHHHHHHHhCC--eEEE-EeCchhhcCCCeEECCHHHHhhHHHcCCeeecCCcCCCC
Confidence 3568999999999999999999999998865443 3455 4599999999999999999999999999998 999963
Q ss_pred ----CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcc--cccccCchhHHHHHH
Q 015095 220 ----HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV--IDKSFGFDTAVEEAQ 293 (413)
Q Consensus 220 ----~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~g--tD~S~GFdTAv~~~~ 293 (413)
+.+++++++|++++||+||+||||||+++|..|+|++.+.|++++||||||||||||.+ ||+|||||||+++++
T Consensus 911 f~t~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~~~s 990 (1419)
T PTZ00287 911 LFDKENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKVYA 990 (1419)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999987 999999999999999
Q ss_pred HHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCC-C----hhhHHHHHHHHHHh-CCcEE
Q 015095 294 RAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLE-G----PGGLFEFIERQLKE-NGHMV 367 (413)
Q Consensus 294 ~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~-~----~~~~~e~i~~r~~~-~~~~v 367 (413)
++|++++.+|.|++++|||||+|||+|||||++||||+ +||+|||||++++-. . .+.+++.|++|.+. +.|+|
T Consensus 991 eaI~nL~~dA~S~~ry~~fVEVMGR~aGhLALe~aLat-gAniiLIPEe~~~~~~tL~~Iid~I~~~I~~R~~~GK~ygI 1069 (1419)
T PTZ00287 991 SLIGNVLTDAVSMPKYWHFIRLMGRSPSHEVLECALQT-HPNMVIISEEYGAADKTLWRVVQDIADVVCARAELGKNYGT 1069 (1419)
T ss_pred HHHHHHHHHHHhcCCcEEEEEECCCchHHHHHHHHHhc-CCCEEEecCcccccccchhHHHHHHHHHHHHHHHcCCCcEE
Confidence 99999999999998889999999999999999999999 899999999998722 1 22456667777665 46899
Q ss_pred EEEeCCCC
Q 015095 368 IVVAEGAG 375 (413)
Q Consensus 368 IvvaEGa~ 375 (413)
|||+||.-
T Consensus 1070 VlV~EGLi 1077 (1419)
T PTZ00287 1070 VLIPDALL 1077 (1419)
T ss_pred EEEcCcHH
Confidence 99999963
No 27
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=5.6e-47 Score=422.06 Aligned_cols=229 Identities=16% Similarity=0.234 Sum_probs=196.2
Q ss_pred CCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCe--eeCC----hhhHhhhhhcCCceeeec
Q 015095 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT--LTLS----PKVVNDIHKRGGTILRTS 216 (413)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~--~~Lt----~~~V~~i~~~GGs~LGTs 216 (413)
...++|||..|||+||+|+||++++..+.+ .+ |+||++||.||++++. +.|+ .+.++.|+++||++|+++
T Consensus 674 ~~~~vgIv~~g~~aPG~NnVI~g~~~~~~~-~g---vig~~~G~~~L~~~~~~~v~l~~~~~~~~~~~~~n~GG~~~~~~ 749 (1328)
T PTZ00468 674 ACESLGLILSCLSTPGTQNVICGLVNGLPS-LK---QLIVFKSLSDFYEGKALKVDLTSEGSLEFFENSLNSGGCIFPNG 749 (1328)
T ss_pred cceeEEEEecCCCCccHHHHHHHHHHHHHh-CC---cEEEEechhHHhcCCceEEecccchhHHHHHHHHhcCCeeeecc
Confidence 347999999999999999999999988863 22 9999999999999874 5565 578999999999999998
Q ss_pred ----------CCC---------C---------------cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcC--
Q 015095 217 ----------RGG---------H---------------DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG-- 260 (413)
Q Consensus 217 ----------R~~---------~---------------d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~-- 260 (413)
|+. + +.+.+.+.|++++||+|++||||||+++|..|+|++.+++
T Consensus 750 ~~~~~~~~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~ 829 (1328)
T PTZ00468 750 VEIKMNVSEKKYSNTTLKANDNQEFTNSSCVLSCKGLVSNDFLSQLLSFFNMRAIAIVGNSEAATFGASLSEQLICMSLN 829 (1328)
T ss_pred ccccccccccccCccccccccchhccccccccccccchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhhccc
Confidence 631 1 3478999999999999999999999999999999987764
Q ss_pred ---CCceeeeeeccccCCCcc--cccccCchhHHHHHHHHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCcc
Q 015095 261 ---LQVAVAGIPKTIDNDIAV--IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVD 335 (413)
Q Consensus 261 ---~~i~vvgIPkTIDNDI~g--tD~S~GFdTAv~~~~~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad 335 (413)
..++|||||||||||+++ ||+|||||||+++++++|.++..++.++++||||||+|||+|||||+++|||+ +||
T Consensus 830 ~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~~~se~Ign~l~Dtass~kr~~fVevMGR~ag~LAL~~gLat-gan 908 (1328)
T PTZ00468 830 GMKSEIPVVFVPVCLENSISHQMIETCIGFDSVTKSISTLVGNLLTDSASATKYWYFMKMIGDKTSNVALEVGIQT-HPN 908 (1328)
T ss_pred cccCCCcEEEeCccccCCCCCCCccccccHHhHHHHHHHHHHHHHHHHHhcCCcEEEEEECCcChHHHHHHHHHhh-CCC
Confidence 469999999999999988 99999999999999999966666666667899999999999999999999999 899
Q ss_pred EEEcCCCC--------------CCCCC-hhhHHHHHHHHHHh-CCcEEEEEeCCCCc
Q 015095 336 CCLIPESP--------------FYLEG-PGGLFEFIERQLKE-NGHMVIVVAEGAGQ 376 (413)
Q Consensus 336 ~ilIPE~p--------------f~l~~-~~~~~e~i~~r~~~-~~~~vIvvaEGa~~ 376 (413)
+|+|||++ +++++ .+.+++.|.+|.+. +.|++||++||+-+
T Consensus 909 ivlIpEe~~~~~~~~~~~~~~~~tL~~ii~~I~~~I~~R~~~Gk~ygvIlIsEGlie 965 (1328)
T PTZ00468 909 LVVIPERYADSKLSVYGSEMAGVTLDDIITEICDIICLRSNQGNNFGGLLVSEGLFD 965 (1328)
T ss_pred EEEecCcccccccccccccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEcCChHH
Confidence 99999997 34321 22455666666655 46899999999854
No 28
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5e-44 Score=378.94 Aligned_cols=344 Identities=40% Similarity=0.534 Sum_probs=312.4
Q ss_pred CCcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHh--ccCCCCcccccccCCccccccCCCCee
Q 015095 69 DGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVI--QKDSPRGVHFRRAGPREKVYFKSDEVR 146 (413)
Q Consensus 69 ~~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~--~~~~~r~~~F~~agpr~~~~~~~~~~~ 146 (413)
..+..|+..+...++|++|.+++++..|++++.+...++..++.|.+.+.. .....+..+|.+++|+++++|.++.+|
T Consensus 43 ~~~i~e~~w~~v~~~~~lggt~~g~ar~~~f~~~~gr~~aa~~~i~~~i~~l~~~ggdgsl~ga~~~p~e~~~~~~elvk 122 (666)
T KOG2440|consen 43 GDSIKEAQWLRVSYILSLGGTLIGTARCKAFRGREGRLAAADNLIARGIPNLVVIGGDGSLTGARAFPREWIYLEEELVK 122 (666)
T ss_pred ccchhhcchhhhCCcccCCCcccccccccccccccceeccchhHHHhhcCeeEecCCccchhHhhhCchhccccchHHhh
Confidence 368999999999999999999999999999999999999999999998743 344456778999999999999999999
Q ss_pred EEEEccCCCCchhHHHHHHHHHHHh-HhCCCcEEEEEccc----------------chhccCCCe--eeCChhhHhhhhh
Q 015095 147 ACIVTCGGLCPGINTVIREIVCGLS-YMYGVDEILGIEGG----------------YRGFYSKNT--LTLSPKVVNDIHK 207 (413)
Q Consensus 147 iaIvtsGG~apGmNavIr~iv~~l~-~~~~~~~V~Gi~~G----------------~~GL~~~~~--~~Lt~~~V~~i~~ 207 (413)
+|||||||.|||.|.+|+++|-.+. ..|+...++|+.-+ ++||+...+ .-+....|..|+.
T Consensus 123 ~giVt~g~~~pg~~lvI~giVgsidnd~~g~~~~iG~dsal~re~id~~~~ta~sh~RgFv~evmgr~cg~lalv~~ia~ 202 (666)
T KOG2440|consen 123 AGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIGIDSALHREAIDAITSTAQSHSRGFVAEVMGRHCGYLALVAAIAG 202 (666)
T ss_pred cceeecccccccCccEEEEEeccccccccccceeeccccchhhhhhhhhhhhhccCcceEEeeehhhccchHHHHHHhhc
Confidence 9999999999999999999998886 67888899998777 889998887 5566778999999
Q ss_pred cCCceeeecCCCCc---HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccC
Q 015095 208 RGGTILRTSRGGHD---TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFG 284 (413)
Q Consensus 208 ~GGs~LGTsR~~~d---~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~G 284 (413)
.++++++++|..++ +.++++..++.++|.||||||+++.++|..++|+++++.++..++++||||||||+-.+.+++
T Consensus 203 ~aD~i~~pe~~~~~~~q~~~~l~~~r~~Gln~viVigG~~~~~ga~i~ae~vk~~~~k~lv~g~p~TilGdvqrgg~p~a 282 (666)
T KOG2440|consen 203 GADTIFIPERPGEDPEQLCEILDSIRKRGLNIVIVIGGAIDNTGAPIIAEEVKERKLKVLVVGVPKTILGDVQRGGVPSA 282 (666)
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCcccHHHHHHhhhheeeecceeeecCccccCCcccc
Confidence 99999999999877 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ch--hHHHHHHHHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCC--------------------
Q 015095 285 FD--TAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPES-------------------- 342 (413)
Q Consensus 285 Fd--TAv~~~~~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~-------------------- 342 (413)
|| ||++..+++|.+++.+|.|+.+++.||++|||+|+++|++++||++..|+|++||.
T Consensus 283 fDr~ta~~~g~eAI~a~l~~a~s~~~g~~~VRlmgr~~~~it~~~tla~~~~d~~l~~elr~~~f~~~~~~~~~~~~~~~ 362 (666)
T KOG2440|consen 283 FDRITACEMGQEAINAALEEAESAENGNGIVRLMGRESVHITLEATLASRDKDFCLAPELRGRKFTLNLNTYKILDVVDP 362 (666)
T ss_pred cchHHHHHHHHHHHHHHHhhchhhcccceeEEehhHHHHHHHHHHHHhcCccceeehhhhcchhhhhhhhHHhhhhcccc
Confidence 88 99999999999999999999999999999999999999999999999999999999
Q ss_pred -----CCCCC--ChhhHHHHHHHHHHhCCcEEEEEeCCCCcccccccCCccc-ccCCCCCcccccHHHHHHHHHHhhh
Q 015095 343 -----PFYLE--GPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVD-EKDASGNRLLLDIGLWLTQKIKIQH 412 (413)
Q Consensus 343 -----pf~l~--~~~~~~e~i~~r~~~~~~~vIvvaEGa~~~~~~~~~~~~~-~~Da~Gn~~l~~vg~~L~~~I~~~~ 412 (413)
||+.+ ..-.++.....+|++..|.+++++|++++.++......++ ..|++++..+.|++.|+.+..++++
T Consensus 363 ~~~~~p~~~~~~~~ii~~g~~~~~lnaa~~~~v~~a~~~G~~~~~i~~~~~gl~~d~~~~~~~~dv~~w~~~ggs~~g 440 (666)
T KOG2440|consen 363 RAEQDPFYGEIPGAIGLFGAPAAGLNAAGHSVLRYAEGAGQDVIAISNGFEGLAKDALGELIWKDVGLWLSQGGSALG 440 (666)
T ss_pred ccccCCCCceeccceeeechhhhHHHHHHHHHHHHhhhcCceeEeeccchhhhhhhhhhhhHHHHhhcccccCchhhe
Confidence 88877 4445678889999999999999999999988876554321 2599999999999999998877765
No 29
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.4e-42 Score=363.50 Aligned_cols=320 Identities=19% Similarity=0.227 Sum_probs=286.5
Q ss_pred CCcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC-----CCcccccccC----------
Q 015095 69 DGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG---------- 133 (413)
Q Consensus 69 ~~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag---------- 133 (413)
..+..|||.++++.+|+ .+.+|+.+|+++++++..|..++.++ .+++| +|+.+|..++
T Consensus 289 ~~~g~eAI~a~l~~a~s------~~~g~~~VRlmgr~~~~it~~~tla~-~~~d~~l~~elr~~~f~~~~~~~~~~~~~~ 361 (666)
T KOG2440|consen 289 CEMGQEAINAALEEAES------AENGNGIVRLMGRESVHITLEATLAS-RDKDFCLAPELRGRKFTLNLNTYKILDVVD 361 (666)
T ss_pred HHHHHHHHHHHHhhchh------hcccceeEEehhHHHHHHHHHHHHhc-CccceeehhhhcchhhhhhhhHHhhhhccc
Confidence 46779999999999988 58999999999999999999999998 56676 5888898877
Q ss_pred Ccc-ccccCCCCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCce
Q 015095 134 PRE-KVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTI 212 (413)
Q Consensus 134 pr~-~~~~~~~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~ 212 (413)
||. ..+|. .+++.+|++.|.|+.|||++++++++.+. +.++++|++.+||+||..+...++.|.+|..|..+||+.
T Consensus 362 ~~~~~~p~~-~~~~~~ii~~g~~~~~lnaa~~~~v~~a~--~~G~~~~~i~~~~~gl~~d~~~~~~~~dv~~w~~~ggs~ 438 (666)
T KOG2440|consen 362 PRAEQDPFY-GEIPGAIGLFGAPAAGLNAAGHSVLRYAE--GAGQDVIAISNGFEGLAKDALGELIWKDVGLWLSQGGSA 438 (666)
T ss_pred cccccCCCC-ceeccceeeechhhhHHHHHHHHHHHHhh--hcCceeEeeccchhhhhhhhhhhhHHHHhhcccccCchh
Confidence 332 22332 22779999999999999999999999875 577899999999999999999999999999999999999
Q ss_pred eeecCCC---CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc-CCCceeeeeeccccCCCcccccccCchhH
Q 015095 213 LRTSRGG---HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDTA 288 (413)
Q Consensus 213 LGTsR~~---~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~-~~~i~vvgIPkTIDNDI~gtD~S~GFdTA 288 (413)
+||.|.. .+++.|..+|++++|++++++||+.++.+...|...+..+ ++++++|.+|.|+.|++|+|++|.|.|||
T Consensus 439 ~gtk~~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~i~~v~ip~t~snnvpgt~~s~gvdt~ 518 (666)
T KOG2440|consen 439 LGTKRETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFDIPMVNIPATYSNNVPGTEFSLGVDTA 518 (666)
T ss_pred heecccCcccccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCcccceEEeeeeecCCccccccccccchh
Confidence 9999973 3899999999999999999999999999999999888777 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhC-CcEE
Q 015095 289 VEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN-GHMV 367 (413)
Q Consensus 289 v~~~~~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~-~~~v 367 (413)
+|.+++.++.+++.+..+++++|++|+||.+|||||..++|+. +++.+||||++|++++++...+++..+++.. +..+
T Consensus 519 ~N~~~~~~d~t~Q~a~~T~~~vf~~e~~gg~~gyla~~~~l~~-ga~~a~v~e~~~~~~~l~~~~~~~~~k~~~~~~~~l 597 (666)
T KOG2440|consen 519 LNAWARVCDSTKQSAFGTKRRVFVVETMGGYSGYLATMTGLAP-GADAAYVPEEGFSIKDLRENAEHLAEKMRYGNPRGL 597 (666)
T ss_pred HhhhhhhhhhccCCcccccceeEEEEecCCCccceeccccccc-cccccccccccccHHHHHHHHHHHHHHhhhcCCCce
Confidence 9999999999999999999999999999999999999999999 7999999999999999999999999998875 4569
Q ss_pred EEEeCCCCcccccccCC----c------ccccCCCCCccccc
Q 015095 368 IVVAEGAGQEFVAQSMP----A------VDEKDASGNRLLLD 399 (413)
Q Consensus 368 IvvaEGa~~~~~~~~~~----~------~~~~Da~Gn~~l~~ 399 (413)
++.+||+..+|.+..+. + ..+.+.-||+|+||
T Consensus 598 ~~r~e~a~~~~~t~~~~~~~~~~~~~~f~~~~~~~gh~qqgg 639 (666)
T KOG2440|consen 598 QLRNEGADANYTTLFLENIYSEEGKGKFQARTNVLGHIQQGG 639 (666)
T ss_pred EEeCCCcchhhhHHHHHHHHhhhcccccceeeccccceecCC
Confidence 99999999877765443 1 12356679999998
No 30
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=91.86 E-value=0.48 Score=46.59 Aligned_cols=59 Identities=24% Similarity=0.308 Sum_probs=40.3
Q ss_pred HHHHHhCC------cEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhH---HHHHHHHHH
Q 015095 227 DNIEDRGI------NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA---VEEAQRAIN 297 (413)
Q Consensus 227 ~~l~~~~I------d~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTA---v~~~~~~i~ 297 (413)
+..++|++ |.+++||||||+-.|...+. ...++|+||-. | ++||-|. .+.+.+.++
T Consensus 13 ~~~~~~~~~~~~~~Dlvi~iGGDGTlL~a~~~~~-----~~~~PvlGIN~-------G---~lGFL~~~~~~~e~~~~l~ 77 (246)
T PRK04761 13 ELVKRYGDVPIEEADVIVALGGDGFMLQTLHRYM-----NSGKPVYGMNR-------G---SVGFLMNEYSEDDLLERIA 77 (246)
T ss_pred HHHHHhCCCCcccCCEEEEECCCHHHHHHHHHhc-----CCCCeEEEEeC-------C---CCCcccCCCCHHHHHHHHH
Confidence 44456677 99999999999876654432 34688999964 2 6899874 345555555
Q ss_pred HHH
Q 015095 298 AAH 300 (413)
Q Consensus 298 ~i~ 300 (413)
++.
T Consensus 78 ~~~ 80 (246)
T PRK04761 78 AAE 80 (246)
T ss_pred Hhh
Confidence 544
No 31
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.68 E-value=0.55 Score=47.09 Aligned_cols=54 Identities=26% Similarity=0.282 Sum_probs=39.0
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHH--HHHHHHHHHHHH
Q 015095 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHV 301 (413)
Q Consensus 233 ~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~~i~~i~~ 301 (413)
+.|.+++||||||+-.|...+. ..++|++||-. -++||-|.+ +.+.++++++..
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFLt~~~~~~~~~~l~~i~~ 119 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAA-----EYDKFVLGIHA----------GHLGFLTDITVDEAEKFFQAFFQ 119 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-----CCCCcEEEEeC----------CCcccCCcCCHHHHHHHHHHHHc
Confidence 6899999999999765554432 34688999842 379999885 556677776643
No 32
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.58 E-value=0.56 Score=46.52 Aligned_cols=56 Identities=27% Similarity=0.325 Sum_probs=38.6
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHH--HHHHHHHHHHH
Q 015095 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAAHV 301 (413)
Q Consensus 233 ~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~--~~~~~i~~i~~ 301 (413)
+.|.++++|||||+-.|...+.. .-.++|++||.. -++||-|.++ .+.++++++..
T Consensus 35 ~~Dlvi~iGGDGT~L~a~~~~~~---~~~~iPilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~ 92 (265)
T PRK04885 35 NPDIVISVGGDGTLLSAFHRYEN---QLDKVRFVGVHT----------GHLGFYTDWRPFEVDKLVIALAK 92 (265)
T ss_pred CCCEEEEECCcHHHHHHHHHhcc---cCCCCeEEEEeC----------CCceecccCCHHHHHHHHHHHHc
Confidence 46899999999998766554321 114688999963 3799999754 45666666644
No 33
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.90 E-value=0.69 Score=45.89 Aligned_cols=55 Identities=27% Similarity=0.314 Sum_probs=37.0
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCC-CceeeeeeccccCCCcccccccCchhHH--HHHHHHHHHHHH
Q 015095 233 GINQVYIIGGDGTQKGAALIYKEVEKRGL-QVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHV 301 (413)
Q Consensus 233 ~Id~LivIGGdgS~~~a~~L~e~~~~~~~-~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~~i~~i~~ 301 (413)
+.|.++++|||||+-.|...+. .. .++++||.. +-++||-|.+ +.+.++++++..
T Consensus 39 ~~D~vi~lGGDGT~L~a~~~~~-----~~~~~pilgIn~---------~G~lGFL~~~~~~~~~~~l~~i~~ 96 (264)
T PRK03501 39 NANIIVSIGGDGTFLQAVRKTG-----FREDCLYAGIST---------KDQLGFYCDFHIDDLDKMIQAITK 96 (264)
T ss_pred CccEEEEECCcHHHHHHHHHhc-----ccCCCeEEeEec---------CCCCeEcccCCHHHHHHHHHHHHc
Confidence 3689999999999876655432 22 467888842 2489998764 445666666543
No 34
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.37 E-value=0.41 Score=47.41 Aligned_cols=62 Identities=23% Similarity=0.370 Sum_probs=41.3
Q ss_pred HHHHHHHHHhCC-----cEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHH--HHHH-
Q 015095 223 NKIVDNIEDRGI-----NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQR- 294 (413)
Q Consensus 223 ~~iv~~l~~~~I-----d~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~--~~~~- 294 (413)
+++.+.++.+++ |.+++||||||+-.|...+. ..++||+||-. | ++||-|.++ .+.+
T Consensus 18 ~~l~~~~~~~~~~~~~~D~vi~iGGDGT~L~a~~~~~-----~~~iPilGIN~-------G---~lGFL~~~~~~~~~~~ 82 (259)
T PRK00561 18 PKLKKVLKKKLAVEDGADYLFVLGGDGFFVSTAANYN-----CAGCKVVGINT-------G---HLGFYTSFNETDLDQN 82 (259)
T ss_pred HHHHHHHhhCCCccCCCCEEEEECCcHHHHHHHHHhc-----CCCCcEEEEec-------C---CCccccccCHHHHHHH
Confidence 344445555555 99999999999876665542 35688999952 2 799999654 3444
Q ss_pred HHHHH
Q 015095 295 AINAA 299 (413)
Q Consensus 295 ~i~~i 299 (413)
.++.+
T Consensus 83 ~~~~l 87 (259)
T PRK00561 83 FANKL 87 (259)
T ss_pred HHHHH
Confidence 44444
No 35
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.96 E-value=1.2 Score=43.79 Aligned_cols=52 Identities=23% Similarity=0.320 Sum_probs=36.8
Q ss_pred hCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHH--HHHHHHHHHH
Q 015095 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE--AQRAINAAHV 301 (413)
Q Consensus 232 ~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~--~~~~i~~i~~ 301 (413)
.+.|.++++|||||+-.|.... .+||+||- . -++||-|..+. +.++++++..
T Consensus 40 ~~~d~vi~iGGDGT~L~a~~~~--------~~Pilgin-------~---G~lGfl~~~~~~~~~~~l~~~~~ 93 (256)
T PRK14075 40 VTADLIIVVGGDGTVLKAAKKV--------GTPLVGFK-------A---GRLGFLSSYTLEEIDRFLEDLKN 93 (256)
T ss_pred CCCCEEEEECCcHHHHHHHHHc--------CCCEEEEe-------C---CCCccccccCHHHHHHHHHHHHc
Confidence 4679999999999987665432 57899985 1 26999987553 4556666543
No 36
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.94 E-value=0.8 Score=46.05 Aligned_cols=55 Identities=27% Similarity=0.369 Sum_probs=40.3
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHH--HHHHHHHHHHHh
Q 015095 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAAHVE 302 (413)
Q Consensus 233 ~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~--~~~~~i~~i~~~ 302 (413)
+.|.++++|||||+-.|...+. ..++||+||-. -++||-|.++ .+.++++++...
T Consensus 64 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFLt~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 64 SADMVISIGGDGTFLRTATYVG-----NSNIPILGINT----------GRLGFLATVSKEEIEETIDELLNG 120 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEec----------CCCCcccccCHHHHHHHHHHHHcC
Confidence 5899999999999766555432 34688999953 3799999864 566777776543
No 37
>PLN02929 NADH kinase
Probab=88.58 E-value=0.82 Score=46.31 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=39.8
Q ss_pred hCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeec---cccCCC-cc----cccccCchhHHH--HHHHHHHHHHH
Q 015095 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK---TIDNDI-AV----IDKSFGFDTAVE--EAQRAINAAHV 301 (413)
Q Consensus 232 ~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPk---TIDNDI-~g----tD~S~GFdTAv~--~~~~~i~~i~~ 301 (413)
.+.|.++++|||||+-.|.... ...+||+||-. +.+.-- .. ...++||-|+++ .+.++++++..
T Consensus 63 ~~~Dlvi~lGGDGT~L~aa~~~------~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~ 136 (301)
T PLN02929 63 RDVDLVVAVGGDGTLLQASHFL------DDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLF 136 (301)
T ss_pred CCCCEEEEECCcHHHHHHHHHc------CCCCcEEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHHc
Confidence 4679999999999987665443 24588999843 111110 00 113899999854 45566666543
No 38
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.42 E-value=0.67 Score=46.92 Aligned_cols=55 Identities=29% Similarity=0.432 Sum_probs=40.3
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHH--HHHHHHHHHHHHh
Q 015095 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHVE 302 (413)
Q Consensus 233 ~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~~i~~i~~~ 302 (413)
+.|.++++|||||+-.|..... ..++|++||.. -++||-|.+ +.+.++++++...
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~-----~~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELAR-----AADVPVLGVNL----------GHVGFLAEAEAEDLDEAVERVVDR 128 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhc-----cCCCcEEEEec----------CCCceeccCCHHHHHHHHHHHHcC
Confidence 6899999999999877665543 34588999963 378998875 5556677666543
No 39
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.91 E-value=0.9 Score=45.99 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=38.4
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHH--HHHHHHHHHHH
Q 015095 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAH 300 (413)
Q Consensus 233 ~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~~i~~i~ 300 (413)
++|.++++|||||+-.|..... ...++++||-. -++||-|.+ +.+.++++++.
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~-----~~~iPilGIN~----------G~lGFLt~~~~~~~~~~l~~l~ 122 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLA-----PCGIPLLTINT----------GHLGFLTEAYLNQLDEAIDQVL 122 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhc-----CCCCcEEEEeC----------CCCcccccCCHHHHHHHHHHHH
Confidence 6899999999999876655432 35688999942 389999874 44556666654
No 40
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.89 E-value=0.92 Score=45.68 Aligned_cols=54 Identities=26% Similarity=0.276 Sum_probs=39.6
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHH--HHHHHHHHHHHH
Q 015095 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHV 301 (413)
Q Consensus 233 ~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~~i~~i~~ 301 (413)
+.|.++++|||||+-.|..... ...+|++||-. | ++||-|.+ +.+.++++++..
T Consensus 68 ~~D~vi~lGGDGT~L~aa~~~~-----~~~~PilGIN~-------G---~lGFL~~~~~~~~~~~l~~i~~ 123 (296)
T PRK04539 68 YCDLVAVLGGDGTFLSVAREIA-----PRAVPIIGINQ-------G---HLGFLTQIPREYMTDKLLPVLE 123 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----ccCCCEEEEec-------C---CCeEeeccCHHHHHHHHHHHHc
Confidence 6899999999999877665543 34688999952 2 69999984 445666666653
No 41
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=87.84 E-value=1.4 Score=46.51 Aligned_cols=119 Identities=24% Similarity=0.372 Sum_probs=69.4
Q ss_pred CCeeEEEEccCCCCchhHH-HHHHH--HHHHhHh------CCCcEEEEEcccchhccC-CC---eeeCChhhHhhhhhcC
Q 015095 143 DEVRACIVTCGGLCPGINT-VIREI--VCGLSYM------YGVDEILGIEGGYRGFYS-KN---TLTLSPKVVNDIHKRG 209 (413)
Q Consensus 143 ~~~~iaIvtsGG~apGmNa-vIr~i--v~~l~~~------~~~~~V~Gi~~G~~GL~~-~~---~~~Lt~~~V~~i~~~G 209 (413)
++.|||+||+||.-|--|. -|.+. ..+..+. ..-.+..-+|.||.--.- .| +.+|+ .+..+...|
T Consensus 222 ~~akIALVTsgGivPkgnPd~i~ss~A~~yg~Y~i~g~~~l~~~~~~~~HgGYD~~~~n~Dpn~v~PlD--~LreLekEG 299 (431)
T TIGR01918 222 SKAKIAVVTSGGIVPKDNPDRIESSSASKYGMYDITGLDRLEGGVYETAHGGFDPAYANADPDRVVPVD--VLRDYEKEG 299 (431)
T ss_pred hhCEEEEEecCCcccCCCCCcccccCCCcceeEeCCCccccCccceEEeccccChHHHhcCCCeeeeHH--HHHHHHHcC
Confidence 4679999999999998883 44321 1100000 001233445566654432 11 23332 233332222
Q ss_pred --C----ceee-----ecCC--CCcHHHHHHHHHHhCCcEEEEEcCCcc-hHHHHHHHHHHHHcCCCc
Q 015095 210 --G----TILR-----TSRG--GHDTNKIVDNIEDRGINQVYIIGGDGT-QKGAALIYKEVEKRGLQV 263 (413)
Q Consensus 210 --G----s~LG-----TsR~--~~d~~~iv~~l~~~~Id~LivIGGdgS-~~~a~~L~e~~~~~~~~i 263 (413)
| .+.+ |.+. ...-.+|++.|++-++|++++...=|| .+....+.+++++.|+++
T Consensus 300 ~IG~L~~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiPv 367 (431)
T TIGR01918 300 KIGELHEYFYSTVGNGTTVAESKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIPV 367 (431)
T ss_pred CcccccCeeEEcCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCE
Confidence 1 1222 2221 134579999999999999999988777 667777899999988653
No 42
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=87.60 E-value=0.33 Score=48.09 Aligned_cols=63 Identities=24% Similarity=0.524 Sum_probs=42.7
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHH--HHHHHHHHHHHH
Q 015095 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHV 301 (413)
Q Consensus 224 ~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~~i~~i~~ 301 (413)
...+.+...+.|.++++|||||+..+.+... ..++||+||+. -+.||-|.. +.+.+++..+..
T Consensus 67 ~~~~~~~~~~~D~ii~lGGDGT~L~~~~~~~-----~~~~Pilgin~----------G~lgfl~~~~~~~~~~~l~~~~~ 131 (285)
T PF01513_consen 67 NALEEMLEEGVDLIIVLGGDGTFLRAARLFG-----DYDIPILGINT----------GTLGFLTEFEPEDIEEALEKILA 131 (285)
T ss_dssp ECCHHHHCCCSSEEEEEESHHHHHHHHHHCT-----TST-EEEEEES----------SSSTSSSSEEGCGHHHHHHHHHH
T ss_pred hhhhhhcccCCCEEEEECCCHHHHHHHHHhc-----cCCCcEEeecC----------CCccccccCCHHHHHHHHHHHhc
Confidence 3344456789999999999999988776543 35789999984 356776654 334555555544
No 43
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.40 E-value=1.2 Score=44.65 Aligned_cols=53 Identities=26% Similarity=0.495 Sum_probs=37.5
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHH--HHHHHHHHHH
Q 015095 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAAH 300 (413)
Q Consensus 233 ~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~--~~~~~i~~i~ 300 (413)
+.|.++++|||||+-.|..... ..+++|+||-. -++||-|.++ .+.++++++.
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~-----~~~~Pilgin~----------G~lGFl~~~~~~~~~~~l~~i~ 117 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLA-----RYDIKVIGINR----------GNLGFLTDLDPDNALQQLSDVL 117 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCeEEEEEC----------CCCCcccccCHHHHHHHHHHHH
Confidence 6899999999999876665542 34578999852 3689988855 3455555553
No 44
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=85.42 E-value=1.4 Score=47.53 Aligned_cols=53 Identities=32% Similarity=0.429 Sum_probs=38.8
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHH--HHHHHHHHHHH
Q 015095 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAH 300 (413)
Q Consensus 233 ~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~~i~~i~ 300 (413)
++|.+|+||||||+-.|..++. ...+||+||. --++||-|.+ +.+.++++.+.
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~-----~~~iPILGIN----------~G~LGFLt~i~~~e~~~~Le~il 316 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFK-----GPVPPVVPFS----------MGSLGFMTPFHSEQYRDCLDAIL 316 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEe----------CCCcceecccCHHHHHHHHHHHH
Confidence 6899999999999877766543 3457899983 2489999875 34556666654
No 45
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=85.41 E-value=0.94 Score=46.64 Aligned_cols=51 Identities=37% Similarity=0.635 Sum_probs=41.4
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCC
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI 276 (413)
+|+...++.+.++++|-+++.|||||.+.+. +.. +-++||.|||.=.-|=.
T Consensus 87 ~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa---~av---~~~vPvLGipaGvk~~S 137 (355)
T COG3199 87 EDTINAVRRMVERGVDLIVFAGGDGTARDVA---EAV---GADVPVLGIPAGVKNYS 137 (355)
T ss_pred HHHHHHHHHHHhcCceEEEEeCCCccHHHHH---hhc---cCCCceEeeccccceec
Confidence 6888999999999999999999999988654 332 45799999997555443
No 46
>PRK13055 putative lipid kinase; Reviewed
Probab=85.11 E-value=2.9 Score=42.30 Aligned_cols=60 Identities=22% Similarity=0.282 Sum_probs=39.4
Q ss_pred ecCCCCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCc
Q 015095 215 TSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 277 (413)
Q Consensus 215 TsR~~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~ 277 (413)
|.+...+.+++++.....+.|.|+++|||||+..+.. .+...+..+++..||.==-||+.
T Consensus 41 t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvn---gl~~~~~~~~LgiiP~GTgNdfA 100 (334)
T PRK13055 41 TTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTINEVVN---GIAPLEKRPKMAIIPAGTTNDYA 100 (334)
T ss_pred eecCCccHHHHHHHHhhcCCCEEEEECCCCHHHHHHH---HHhhcCCCCcEEEECCCchhHHH
Confidence 4333345667777777788999999999999876542 22222334567778876666664
No 47
>PRK11914 diacylglycerol kinase; Reviewed
Probab=84.87 E-value=1.7 Score=43.09 Aligned_cols=70 Identities=30% Similarity=0.511 Sum_probs=50.6
Q ss_pred CCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchh-HHHHHHHHH
Q 015095 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT-AVEEAQRAI 296 (413)
Q Consensus 219 ~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdT-Av~~~~~~i 296 (413)
..+..++++...+.+.|.++++|||||...+.. .+. +.++++..||.==-||+. +++|..+ -.+.+.+.+
T Consensus 50 ~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~---~l~--~~~~~lgiiP~GT~NdfA---r~lg~~~~~~~~a~~~i 120 (306)
T PRK11914 50 AHDARHLVAAALAKGTDALVVVGGDGVISNALQ---VLA--GTDIPLGIIPAGTGNDHA---REFGIPTGDPEAAADVI 120 (306)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCchHHHHHhH---Hhc--cCCCcEEEEeCCCcchhH---HHcCCCCCCHHHHHHHH
Confidence 346677777777888999999999999886542 222 345778899998889988 5778765 355555444
No 48
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=84.82 E-value=1.6 Score=43.82 Aligned_cols=54 Identities=30% Similarity=0.422 Sum_probs=39.8
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHH--HHHHHHHHHHHH
Q 015095 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHV 301 (413)
Q Consensus 233 ~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~~i~~i~~ 301 (413)
+.|.++++|||||+-.+..... ..+++|+||.. -++||-|++ +.+.++++.+..
T Consensus 62 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~----------G~lGFl~~~~~~~~~~~l~~~~~ 117 (295)
T PRK01231 62 VCDLVIVVGGDGSLLGAARALA-----RHNVPVLGINR----------GRLGFLTDIRPDELEFKLAEVLD 117 (295)
T ss_pred CCCEEEEEeCcHHHHHHHHHhc-----CCCCCEEEEeC----------CcccccccCCHHHHHHHHHHHHc
Confidence 6899999999999877654432 35688999974 369999874 446667776653
No 49
>PRK13337 putative lipid kinase; Reviewed
Probab=84.43 E-value=5.2 Score=39.74 Aligned_cols=90 Identities=24% Similarity=0.279 Sum_probs=56.0
Q ss_pred CCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHH
Q 015095 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINA 298 (413)
Q Consensus 219 ~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~ 298 (413)
..+..++++.+.+.+.|.|+++|||||...+..- +...+..+++..||.==-||+. +++|...-...+.+.+
T Consensus 43 ~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~g---l~~~~~~~~lgiiP~GT~NdfA---r~lgi~~~~~~a~~~i-- 114 (304)
T PRK13337 43 PGDATLAAERAVERKFDLVIAAGGDGTLNEVVNG---IAEKENRPKLGIIPVGTTNDFA---RALHVPRDIEKAADVI-- 114 (304)
T ss_pred CCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHH---HhhCCCCCcEEEECCcCHhHHH---HHcCCCCCHHHHHHHH--
Confidence 4567777777777889999999999998776642 2223345678889987778875 3555544344433332
Q ss_pred HHHhhhccCCcEEEEEcCCCCc
Q 015095 299 AHVEVESVENGVGIVKLMGRYS 320 (413)
Q Consensus 299 i~~~A~s~~~rv~iVEvMGR~s 320 (413)
. .+..+.+-+.++-+|..
T Consensus 115 -~---~g~~~~vDlg~vn~~~f 132 (304)
T PRK13337 115 -I---EGHTVPVDIGKANNRYF 132 (304)
T ss_pred -H---cCCeEEEEEEEECCEEE
Confidence 2 12223455666655543
No 50
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=84.13 E-value=7.1 Score=38.22 Aligned_cols=140 Identities=16% Similarity=0.202 Sum_probs=79.3
Q ss_pred eeeecCCCCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCC--CcccccccCch--h
Q 015095 212 ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND--IAVIDKSFGFD--T 287 (413)
Q Consensus 212 ~LGTsR~~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDND--I~gtD~S~GFd--T 287 (413)
+|.++....+.++.++.|.++++|++++.+-.........+.+ . .+|||.+=.+.+++ ++ ++..| .
T Consensus 35 ~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~----~--~iPvV~~~~~~~~~~~~~----~V~~D~~~ 104 (279)
T PF00532_consen 35 LLCNTGDDEEKEEYIELLLQRRVDGIILASSENDDEELRRLIK----S--GIPVVLIDRYIDNPEGVP----SVYIDNYE 104 (279)
T ss_dssp EEEEETTTHHHHHHHHHHHHTTSSEEEEESSSCTCHHHHHHHH----T--TSEEEEESS-SCTTCTSC----EEEEEHHH
T ss_pred EEecCCCchHHHHHHHHHHhcCCCEEEEecccCChHHHHHHHH----c--CCCEEEEEeccCCcccCC----EEEEcchH
Confidence 3445555556668999999999999999976666343333322 2 57788887777766 33 22333 2
Q ss_pred HHHHHHHHHHHHHHhhhccCCc-EEEEEc-------CCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHH
Q 015095 288 AVEEAQRAINAAHVEVESVENG-VGIVKL-------MGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQ 359 (413)
Q Consensus 288 Av~~~~~~i~~i~~~A~s~~~r-v~iVEv-------MGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r 359 (413)
|...++ +.+. ..++ ++ |.++-. .-|..||..+....-- ..+-.+|.+..++.+ .-.+.+++.
T Consensus 105 a~~~a~---~~Li--~~Gh-~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl-~~~~~~i~~~~~~~~---~g~~~~~~l 174 (279)
T PF00532_consen 105 AGYEAT---EYLI--KKGH-RRPIAFIGGPEDSSTSRERLQGYRDALKEAGL-PIDEEWIFEGDFDYE---SGYEAAREL 174 (279)
T ss_dssp HHHHHH---HHHH--HTTC-CSTEEEEEESTTTHHHHHHHHHHHHHHHHTTS-CEEEEEEEESSSSHH---HHHHHHHHH
T ss_pred HHHHHH---HHHH--hccc-CCeEEEEecCcchHHHHHHHHHHHHHHHHcCC-CCCcccccccCCCHH---HHHHHHHHH
Confidence 333333 2222 2344 45 666543 3466688765544211 245666666777665 334555655
Q ss_pred HHhCCc--EEEEEe
Q 015095 360 LKENGH--MVIVVA 371 (413)
Q Consensus 360 ~~~~~~--~vIvva 371 (413)
++.+.. +++..+
T Consensus 175 l~~~p~idai~~~n 188 (279)
T PF00532_consen 175 LESHPDIDAIFCAN 188 (279)
T ss_dssp HHTSTT-SEEEESS
T ss_pred HhhCCCCEEEEEeC
Confidence 665544 666544
No 51
>PRK13054 lipid kinase; Reviewed
Probab=84.02 E-value=5 Score=39.82 Aligned_cols=90 Identities=21% Similarity=0.272 Sum_probs=55.0
Q ss_pred CCCCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc--CCCceeeeeeccccCCCcccccccCchhHHHHHHH
Q 015095 217 RGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR--GLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQR 294 (413)
Q Consensus 217 R~~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~--~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ 294 (413)
+...+..++++.....+.|.++++|||||+..+..- +... +.++++..||.==-||+. +++|-..-.+.+.+
T Consensus 40 ~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~---l~~~~~~~~~~lgiiP~GTgNdfa---r~lgi~~~~~~a~~ 113 (300)
T PRK13054 40 WEKGDAARYVEEALALGVATVIAGGGDGTINEVATA---LAQLEGDARPALGILPLGTANDFA---TAAGIPLEPDKALK 113 (300)
T ss_pred cCCCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHH---HHhhccCCCCcEEEEeCCcHhHHH---HhcCCCCCHHHHHH
Confidence 334556777777777889999999999998775422 2222 335678889988888876 34554433333333
Q ss_pred HHHHHHHhhhccCCcEEEEEcCCC
Q 015095 295 AINAAHVEVESVENGVGIVKLMGR 318 (413)
Q Consensus 295 ~i~~i~~~A~s~~~rv~iVEvMGR 318 (413)
.+. ....+.+-+.++=+|
T Consensus 114 ~i~------~g~~~~iDlg~v~~~ 131 (300)
T PRK13054 114 LAI------EGRAQPIDLARVNDR 131 (300)
T ss_pred HHH------hCCceEEEEEEEcCc
Confidence 322 122234555555555
No 52
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=82.79 E-value=6.7 Score=38.78 Aligned_cols=62 Identities=24% Similarity=0.326 Sum_probs=42.5
Q ss_pred ecCCCCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCc
Q 015095 215 TSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 277 (413)
Q Consensus 215 TsR~~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~ 277 (413)
+.+...+..++++.+.+.+.|.++++|||||...+..-.-.. ..+..+++..||.==-||+.
T Consensus 34 ~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~-~~~~~~~lgiiP~GTgNdfA 95 (293)
T TIGR03702 34 VTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQI-RDDAAPALGLLPLGTANDFA 95 (293)
T ss_pred EecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhh-CCCCCCcEEEEcCCchhHHH
Confidence 344445677788777778899999999999987755322110 11234568889987788874
No 53
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.43 E-value=1.8 Score=43.73 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=38.6
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHH---HHHHHHHHH
Q 015095 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEA---QRAINAAHV 301 (413)
Q Consensus 233 ~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~---~~~i~~i~~ 301 (413)
+.|.++++|||||+..+..... +..+++++|.. .-++||-|..... .++++++..
T Consensus 57 ~~d~vi~~GGDGT~l~~~~~~~-----~~~~pv~gin~---------~G~lGFL~~~~~~~~~~~~l~~i~~ 114 (305)
T PRK02645 57 LIDLAIVLGGDGTVLAAARHLA-----PHDIPILSVNV---------GGHLGFLTHPRDLLQDESVWDRLQE 114 (305)
T ss_pred CcCEEEEECCcHHHHHHHHHhc-----cCCCCEEEEec---------CCcceEecCchhhcchHHHHHHHHc
Confidence 6899999999999876655432 34678898864 3489999976432 456666543
No 54
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=82.30 E-value=5 Score=42.55 Aligned_cols=122 Identities=23% Similarity=0.355 Sum_probs=71.0
Q ss_pred CCeeEEEEccCCCCchhHH-HHH--HHHHHHhH------hCCCcEEEEEcccchhccC-CC---eeeCChhhHhhhhhcC
Q 015095 143 DEVRACIVTCGGLCPGINT-VIR--EIVCGLSY------MYGVDEILGIEGGYRGFYS-KN---TLTLSPKVVNDIHKRG 209 (413)
Q Consensus 143 ~~~~iaIvtsGG~apGmNa-vIr--~iv~~l~~------~~~~~~V~Gi~~G~~GL~~-~~---~~~Lt~~~V~~i~~~G 209 (413)
++.|||+||+||+-|--|- -|. ++-++..+ .....+..-+|.||.--.- .| +.+|+ .+..+...|
T Consensus 222 ~~akIALvTsgGivPkgnPd~i~s~~A~~yg~Y~i~~~~~l~~~~~~~~HgGYD~~~~n~Dpn~v~PlD--~LreLe~EG 299 (431)
T TIGR01917 222 SKAKIAIVTSGGIVPKGNPDHIESSSASKYGKYDIDGFDDLSEADHETAHGGHDPTYANEDADRVIPVD--VLRDLEKEG 299 (431)
T ss_pred hhCEEEEEecCCcccCCCCCccccccCCCceEEeCCccCcCCccceEEeccccChHHHhcCCCeeeeHH--HHHHHHHcC
Confidence 5679999999999987775 232 11111000 0011244455667665432 12 33332 333333332
Q ss_pred --C----cee-----eecCC--CCcHHHHHHHHHHhCCcEEEEEcCCcc-hHHHHHHHHHHHHcCCCceee
Q 015095 210 --G----TIL-----RTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGT-QKGAALIYKEVEKRGLQVAVA 266 (413)
Q Consensus 210 --G----s~L-----GTsR~--~~d~~~iv~~l~~~~Id~LivIGGdgS-~~~a~~L~e~~~~~~~~i~vv 266 (413)
| .+. ||++. ...-++|++.|++-++|++++.-.=|| .+....+.+++++.|+++..+
T Consensus 300 ~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i 370 (431)
T TIGR01917 300 KIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHI 370 (431)
T ss_pred CcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEE
Confidence 1 122 22221 134578999999999999999977776 666777899999988664333
No 55
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=81.95 E-value=9.6 Score=40.93 Aligned_cols=98 Identities=16% Similarity=0.256 Sum_probs=61.1
Q ss_pred cEEEEEcccchhccCCCeeeCChhhHhhhhhcCCc---eeeecCCCCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHH-H
Q 015095 177 DEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT---ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAAL-I 252 (413)
Q Consensus 177 ~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs---~LGTsR~~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~-L 252 (413)
.+++-|.|=..|= ++-..+-++.+..+....|- +.-|.+. .+..++++.+...+.|.++++|||||+..+.. |
T Consensus 112 kr~lvIvNP~SGk--g~a~k~~~~~v~~~L~~~gi~~~v~~T~~~-ghA~~la~~~~~~~~D~VV~vGGDGTlnEVvNGL 188 (481)
T PLN02958 112 KRLLVFVNPFGGK--KSASKIFFDVVKPLLEDADIQLTIQETKYQ-LHAKEVVRTMDLSKYDGIVCVSGDGILVEVVNGL 188 (481)
T ss_pred cEEEEEEcCCCCC--cchhHHHHHHHHHHHHHcCCeEEEEeccCc-cHHHHHHHHhhhcCCCEEEEEcCCCHHHHHHHHH
Confidence 4777777776663 22222223346655555552 3444443 45566777777778999999999999875442 3
Q ss_pred HHHHH--HcCCCceeeeeeccccCCCcc
Q 015095 253 YKEVE--KRGLQVAVAGIPKTIDNDIAV 278 (413)
Q Consensus 253 ~e~~~--~~~~~i~vvgIPkTIDNDI~g 278 (413)
.+ .. +.+.++++..||.==-||+.-
T Consensus 189 ~~-~~~~~~~~~~pLGiIPaGTgNdfAr 215 (481)
T PLN02958 189 LE-REDWKTAIKLPIGMVPAGTGNGMAK 215 (481)
T ss_pred hh-CccccccccCceEEecCcCcchhhh
Confidence 21 10 014468899999988899863
No 56
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.12 E-value=2.2 Score=42.49 Aligned_cols=53 Identities=28% Similarity=0.337 Sum_probs=36.4
Q ss_pred hCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHH--HHHHHHHHHH
Q 015095 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAAH 300 (413)
Q Consensus 232 ~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~--~~~~~i~~i~ 300 (413)
.+.|.++++|||||+-.|..+. ...+++++||. | +.||-|.++ .+.++++++.
T Consensus 56 ~~~d~vi~iGGDGTlL~a~~~~------~~~~pi~gIn~-------G---~lGFl~~~~~~~~~~~l~~i~ 110 (277)
T PRK03708 56 MDVDFIIAIGGDGTILRIEHKT------KKDIPILGINM-------G---TLGFLTEVEPEETFFALSRLL 110 (277)
T ss_pred cCCCEEEEEeCcHHHHHHHHhc------CCCCeEEEEeC-------C---CCCccccCCHHHHHHHHHHHH
Confidence 4789999999999998666532 33688999984 2 568888754 2334444443
No 57
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=80.23 E-value=46 Score=30.23 Aligned_cols=127 Identities=17% Similarity=0.144 Sum_probs=71.0
Q ss_pred eEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcHHHH
Q 015095 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (413)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~~i 225 (413)
|||++..+-..|-.+.+++++-..+.. .+ .++.- +.+........+.
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~-~g-~~l~~-------------------------------~~~~~~~~~~~~~ 47 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKA-AG-YQVLL-------------------------------ANSQNDAEKQLSA 47 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHH-cC-CeEEE-------------------------------EeCCCCHHHHHHH
Confidence 588999876788888888888776643 21 11110 0111111234567
Q ss_pred HHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHHHHhhhc
Q 015095 226 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVES 305 (413)
Q Consensus 226 v~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i~~~A~s 305 (413)
++.+...++|++++.+.+.+... ..+.+.+.+ +++|.+-.+.++ .....++++|.. +....+.+.+... .
T Consensus 48 ~~~~~~~~~d~ii~~~~~~~~~~---~~~~l~~~~--ip~v~~~~~~~~--~~~~~~v~~d~~-~~~~~~~~~l~~~--g 117 (264)
T cd01537 48 LENLIARGVDGIIIAPSDLTAPT---IVKLARKAG--IPVVLVDRDIPD--GDRVPSVGSDNE-QAGYLAGEHLAEK--G 117 (264)
T ss_pred HHHHHHcCCCEEEEecCCCcchh---HHHHhhhcC--CCEEEeccCCCC--CcccceEecCcH-HHHHHHHHHHHHh--c
Confidence 77777889999999887766543 233333334 667777666553 122335555543 2333334444333 2
Q ss_pred cCCcEEEEEcC
Q 015095 306 VENGVGIVKLM 316 (413)
Q Consensus 306 ~~~rv~iVEvM 316 (413)
.+++.++--.
T Consensus 118 -~~~i~~i~~~ 127 (264)
T cd01537 118 -HRRIALLAGP 127 (264)
T ss_pred -CCcEEEEECC
Confidence 4567777543
No 58
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=79.92 E-value=3.3 Score=41.53 Aligned_cols=53 Identities=25% Similarity=0.412 Sum_probs=38.6
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHH--HHHHHHHHHHH
Q 015095 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAH 300 (413)
Q Consensus 233 ~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~~i~~i~ 300 (413)
+.|.++++|||||+..|..... +.+++++||- --++||-|.+ +.+.++++.+.
T Consensus 63 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~pilGIn----------~G~lGFL~~~~~~~~~~~l~~~~ 117 (291)
T PRK02155 63 RADLAVVLGGDGTMLGIGRQLA-----PYGVPLIGIN----------HGRLGFITDIPLDDMQETLPPML 117 (291)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEc----------CCCccccccCCHHHHHHHHHHHH
Confidence 5899999999999877665432 3468899985 1368999863 45666776664
No 59
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.80 E-value=1.8 Score=43.19 Aligned_cols=51 Identities=27% Similarity=0.514 Sum_probs=35.2
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHH--HHHHHHHH
Q 015095 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINA 298 (413)
Q Consensus 233 ~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~--~~~~~i~~ 298 (413)
+.|.+++||||||+-.|..... ..++||+||-. -++||-|.++ .+.+.+.+
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~-----~~~~PilgIn~----------G~lGFL~~~~~~~~~~~l~~ 94 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLA-----KYDIPLIGINR----------GNLGFLTDIDPKNAYEQLEA 94 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEeC----------CCCcccccCCHHHHHHHHHH
Confidence 6899999999999876655432 34688999942 3689988643 33444443
No 60
>PRK13059 putative lipid kinase; Reviewed
Probab=77.93 E-value=8.1 Score=38.31 Aligned_cols=62 Identities=27% Similarity=0.419 Sum_probs=41.6
Q ss_pred HHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHH
Q 015095 228 NIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRA 295 (413)
Q Consensus 228 ~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~ 295 (413)
...+.+.+.++++|||||...+. +.+.+.+.++++..||.==-||+. +++|...-...+.+.
T Consensus 51 ~~~~~~~d~vi~~GGDGTv~evv---~gl~~~~~~~~lgviP~GTgNdfA---r~lgi~~~~~~a~~~ 112 (295)
T PRK13059 51 KDIDESYKYILIAGGDGTVDNVV---NAMKKLNIDLPIGILPVGTANDFA---KFLGMPTDIGEACEQ 112 (295)
T ss_pred HHhhcCCCEEEEECCccHHHHHH---HHHHhcCCCCcEEEECCCCHhHHH---HHhCCCCCHHHHHHH
Confidence 33456889999999999987654 333334556788899987778875 355654444444443
No 61
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=77.80 E-value=4.4 Score=40.35 Aligned_cols=55 Identities=31% Similarity=0.486 Sum_probs=39.4
Q ss_pred hCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHH--HHHHHHHHHH
Q 015095 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE--AQRAINAAHV 301 (413)
Q Consensus 232 ~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~--~~~~i~~i~~ 301 (413)
...+.++++|||||+-.+..... ...++|+||= + -++||-|-.+. +.++++++..
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~-----~~~~pilgin---------~-G~lGFLt~~~~~~~~~~~~~~~~ 110 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLA-----RLDIPVLGIN---------L-GHLGFLTDFEPDELEKALDALLE 110 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhc-----cCCCCEEEEe---------C-CCcccccccCHHHHHHHHHHHhc
Confidence 67899999999999988776654 3448899983 2 28999998872 3444444433
No 62
>PRK06186 hypothetical protein; Validated
Probab=77.33 E-value=4.4 Score=39.54 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=40.2
Q ss_pred CCcEEEEEcCCcc--hHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHHHHhhhcc
Q 015095 233 GINQVYIIGGDGT--QKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESV 306 (413)
Q Consensus 233 ~Id~LivIGGdgS--~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i~~~A~s~ 306 (413)
++|+++|.||+|. ..+.....+++++++ +|+.|| |+|++.|+=+.++-+- ...+|.|+
T Consensus 53 ~~dgilvpgGfg~rg~~Gki~ai~~Are~~--iP~LGI-------------ClGmQ~avIe~arnv~-g~~dA~s~ 112 (229)
T PRK06186 53 GFDGIWCVPGSPYRNDDGALTAIRFARENG--IPFLGT-------------CGGFQHALLEYARNVL-GWADAAHA 112 (229)
T ss_pred hCCeeEeCCCCCcccHhHHHHHHHHHHHcC--CCeEee-------------chhhHHHHHHHHhhhc-CCcCCCcC
Confidence 5799999999997 556666777777655 557777 9999987655544321 13355554
No 63
>PLN02727 NAD kinase
Probab=77.30 E-value=3.6 Score=47.43 Aligned_cols=53 Identities=25% Similarity=0.384 Sum_probs=39.4
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHH--HHHHHHHHHHH
Q 015095 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAH 300 (413)
Q Consensus 233 ~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~~i~~i~ 300 (413)
++|.+|+||||||+-.|..+.. +..+||+||-. -++||-|-+ +.+.+.++.+.
T Consensus 743 ~~DLVIvLGGDGTlLrAar~~~-----~~~iPILGINl----------GrLGFLTdi~~ee~~~~L~~Il 797 (986)
T PLN02727 743 RVDFVACLGGDGVILHASNLFR-----GAVPPVVSFNL----------GSLGFLTSHYFEDFRQDLRQVI 797 (986)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEeC----------CCccccccCCHHHHHHHHHHHH
Confidence 6899999999999987776653 34578999852 389999865 34556666654
No 64
>PRK00861 putative lipid kinase; Reviewed
Probab=76.40 E-value=5.6 Score=39.35 Aligned_cols=68 Identities=25% Similarity=0.404 Sum_probs=45.5
Q ss_pred CCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHH
Q 015095 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQR 294 (413)
Q Consensus 219 ~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ 294 (413)
..+..++++...+.+.|.++++|||||+..+.. .+.. ..+++..||.==-||+. +++|...-...+.+
T Consensus 43 ~~~a~~~a~~~~~~~~d~vv~~GGDGTl~evv~---~l~~--~~~~lgviP~GTgNdfA---r~lgi~~~~~~a~~ 110 (300)
T PRK00861 43 EIGADQLAQEAIERGAELIIASGGDGTLSAVAG---ALIG--TDIPLGIIPRGTANAFA---AALGIPDTIEEACR 110 (300)
T ss_pred CCCHHHHHHHHHhcCCCEEEEECChHHHHHHHH---HHhc--CCCcEEEEcCCchhHHH---HHcCCCCCHHHHHH
Confidence 456778887777888999999999999877543 2222 24667788876667764 45555543333333
No 65
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.39 E-value=4.5 Score=44.24 Aligned_cols=53 Identities=32% Similarity=0.460 Sum_probs=38.7
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHH--HHHHHHHHHHH
Q 015095 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAH 300 (413)
Q Consensus 233 ~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~~i~~i~ 300 (413)
++|.++++|||||+-.|..... ...+||+||-. -++||-|.+ +.+.++++.+.
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGin~----------G~lGFL~~~~~~~~~~~l~~~~ 402 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVN-----GEEIPIICINM----------GTVGFLTEFSKEEIFKAIDSII 402 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEcC----------CCCCcCcccCHHHHHHHHHHHH
Confidence 6899999999999876665432 34688999953 479999975 44566666654
No 66
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.39 E-value=5.3 Score=39.80 Aligned_cols=51 Identities=29% Similarity=0.354 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHH--HHHHHHHHHHH
Q 015095 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAAHV 301 (413)
Q Consensus 233 ~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~--~~~~~i~~i~~ 301 (413)
+.|.++++|||||+-.|.+.. ..|++||-. -++||-|.+. .+.++++++..
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~--------~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~ 104 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRA--------KGPILGINM----------GGLGFLTEIEIDEVGSAIKKLIR 104 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHc--------CCCEEEEEC----------CCCccCcccCHHHHHHHHHHHHc
Confidence 789999999999986554321 247898843 3689988643 45566666554
No 67
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=75.62 E-value=10 Score=40.46 Aligned_cols=96 Identities=15% Similarity=0.231 Sum_probs=62.7
Q ss_pred cCCCCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC
Q 015095 140 FKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG 219 (413)
Q Consensus 140 ~~~~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~ 219 (413)
.+.-+-+|||||| ++. ||||-+...+...++..+|+-+.-=.+| =.. .
T Consensus 131 LP~~p~~IGVITS--~tg---AairDIl~~~~rR~P~~~viv~pt~VQG---------------------~~A------~ 178 (440)
T COG1570 131 LPFFPKKIGVITS--PTG---AALRDILHTLSRRFPSVEVIVYPTLVQG---------------------EGA------A 178 (440)
T ss_pred CCCCCCeEEEEcC--Cch---HHHHHHHHHHHhhCCCCeEEEEeccccC---------------------CCc------H
Confidence 3344569999998 554 6899999999888886666654322221 000 1
Q ss_pred CcHHHHHHHHHHhC-CcEEEEEcCCcchHHHHHHHHHHHHc---CCCceeee
Q 015095 220 HDTNKIVDNIEDRG-INQVYIIGGDGTQKGAALIYKEVEKR---GLQVAVAG 267 (413)
Q Consensus 220 ~d~~~iv~~l~~~~-Id~LivIGGdgS~~~a~~L~e~~~~~---~~~i~vvg 267 (413)
..+-+.++.+.+.+ +|.|||.=|-||...--.+.+|.-.+ ..+||||.
T Consensus 179 ~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvIS 230 (440)
T COG1570 179 EEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVIS 230 (440)
T ss_pred HHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEe
Confidence 22334445555555 99999999999998877666664433 55677764
No 68
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=75.36 E-value=5.5 Score=40.20 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=43.3
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH--cCCCceeeeeeccccCC
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK--RGLQVAVAGIPKTIDND 275 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~--~~~~i~vvgIPkTIDND 275 (413)
...+++++.+++.+.|.++-|||--+++.|..++-.... +.-.+++|.||-|--.+
T Consensus 65 ~~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~~~~~~~~~~p~i~VPTtagtg 122 (332)
T cd08180 65 EVVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFAKKLGKKKKPLFIAIPTTSGTG 122 (332)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHHhCCCCCCCCCEEEeCCCCcch
Confidence 346789999999999999999999999999877544322 22247899999986433
No 69
>PRK13057 putative lipid kinase; Reviewed
Probab=75.34 E-value=7.7 Score=38.15 Aligned_cols=65 Identities=26% Similarity=0.447 Sum_probs=42.1
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHH
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQ 293 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~ 293 (413)
.+..++++. ...+.|.++++|||||+..+..- +. +.++++..||.==-||+. +++|...-...+.
T Consensus 38 ~~a~~~~~~-~~~~~d~iiv~GGDGTv~~v~~~---l~--~~~~~lgiiP~GT~Ndfa---r~Lg~~~~~~~a~ 102 (287)
T PRK13057 38 DDLSEVIEA-YADGVDLVIVGGGDGTLNAAAPA---LV--ETGLPLGILPLGTANDLA---RTLGIPLDLEAAA 102 (287)
T ss_pred HHHHHHHHH-HHcCCCEEEEECchHHHHHHHHH---Hh--cCCCcEEEECCCCccHHH---HHcCCCCCHHHHH
Confidence 345566655 35678999999999998776432 22 234678899987778875 3445443333333
No 70
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=75.13 E-value=3.9 Score=41.69 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=45.9
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc--------------CCCceeeeeeccccCCC
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR--------------GLQVAVAGIPKTIDNDI 276 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~--------------~~~i~vvgIPkTIDNDI 276 (413)
.+.+++++.++++++|.++-|||--++..|+.++-..... +-.+++|.||-|-.+--
T Consensus 65 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtGs 135 (366)
T PF00465_consen 65 EDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTGS 135 (366)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSSG
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCccccc
Confidence 4678999999999999999999999999999887765421 11278999999887643
No 71
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=74.81 E-value=14 Score=37.24 Aligned_cols=108 Identities=22% Similarity=0.266 Sum_probs=63.1
Q ss_pred EEEEEcccchhccCCCeeeCChhhHhhh-hhcCCcee--eecCCCCcHHHHHHHHHHhCCcEEEEEcCCcchHH-HHHHH
Q 015095 178 EILGIEGGYRGFYSKNTLTLSPKVVNDI-HKRGGTIL--RTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKG-AALIY 253 (413)
Q Consensus 178 ~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i-~~~GGs~L--GTsR~~~d~~~iv~~l~~~~Id~LivIGGdgS~~~-a~~L~ 253 (413)
++..|.|-..| + .-..-.|..+... ...|.+.. =|... .+..++++.+...++|.+++.|||||... +.-|+
T Consensus 4 ~~~~i~Np~sG--~-~~~~~~~~~~~~~l~~~g~~~~~~~t~~~-g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~ 79 (301)
T COG1597 4 KALLIYNPTSG--K-GKAKKLLREVEELLEEAGHELSVRVTEEA-GDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLA 79 (301)
T ss_pred eEEEEEccccc--c-cchhhHHHHHHHHHHhcCCeEEEEEeecC-ccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHh
Confidence 45555555555 1 1222334444443 33443211 12111 36788888888889999999999999874 33343
Q ss_pred HHHHHcCCCceeeeeeccccCCCcccccccCchh-HHHHHHHHHH
Q 015095 254 KEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT-AVEEAQRAIN 297 (413)
Q Consensus 254 e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdT-Av~~~~~~i~ 297 (413)
+.+... +.-||.==-||+. +++|... ....+.+.+.
T Consensus 80 ----~~~~~~-LgilP~GT~NdfA---r~Lgip~~~~~~Al~~i~ 116 (301)
T COG1597 80 ----GTDDPP-LGILPGGTANDFA---RALGIPLDDIEAALELIK 116 (301)
T ss_pred ----cCCCCc-eEEecCCchHHHH---HHcCCCchhHHHHHHHHH
Confidence 333332 7778876777765 4666666 3555555443
No 72
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=74.54 E-value=6.6 Score=38.52 Aligned_cols=52 Identities=25% Similarity=0.286 Sum_probs=32.6
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCc
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 277 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~ 277 (413)
...++...+.+.+.++++|||||+..+..-.. ...-..++..||.==-||+.
T Consensus 47 ~~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~---~~~~~~~lgiiP~Gt~N~~a 98 (293)
T TIGR00147 47 ARYVEEARKFGVDTVIAGGGDGTINEVVNALI---QLDDIPALGILPLGTANDFA 98 (293)
T ss_pred HHHHHHHHhcCCCEEEEECCCChHHHHHHHHh---cCCCCCcEEEEcCcCHHHHH
Confidence 34454555668999999999999987553221 11111234448976677765
No 73
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=73.82 E-value=6.2 Score=39.93 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=43.6
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCc
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 277 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~ 277 (413)
+..+++++.+++.+.|.++-|||--.++.|..++.. + .+++|.||-|..+|-.
T Consensus 65 ~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~~---~--~~p~i~iPTT~~t~s~ 117 (339)
T cd08173 65 EEVEKVESSARDIGADFVIGVGGGRVIDVAKVAAYK---L--GIPFISVPTAASHDGI 117 (339)
T ss_pred HHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHHh---c--CCCEEEecCcccCCcc
Confidence 457888999999999999999999999998888732 2 4689999999876543
No 74
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=73.52 E-value=5.3 Score=40.56 Aligned_cols=52 Identities=15% Similarity=0.285 Sum_probs=43.7
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCC
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI 276 (413)
+..+++++.+++.++|.++-|||--.+..|..++-.. .+++|.||-|-..+-
T Consensus 63 ~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~-----~~p~i~VPTT~gtgs 114 (347)
T cd08172 63 ENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRL-----GVPVITVPTLAATCA 114 (347)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----CCCEEEecCccccCc
Confidence 4578999999999999999999999999999887543 478999999975543
No 75
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=72.48 E-value=23 Score=35.75 Aligned_cols=171 Identities=14% Similarity=0.180 Sum_probs=91.8
Q ss_pred eEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCC-CCcHHH
Q 015095 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDTNK 224 (413)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~-~~d~~~ 224 (413)
.||++..--.-|-...+++++-..+.. ++ ..+ +|.++.. .+..++
T Consensus 60 ~Ig~i~p~~~~~~~~~i~~gi~~~~~~-~g-y~~--------------------------------~l~~~~~~~~~e~~ 105 (333)
T COG1609 60 TIGLVVPDITNPFFAEILKGIEEAARE-AG-YSL--------------------------------LLANTDDDPEKERE 105 (333)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHHHH-cC-CEE--------------------------------EEECCCCCHHHHHH
Confidence 677776544446667777777766643 22 111 4555554 345678
Q ss_pred HHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeecccc-CCCc--ccccccCchhHHHHHHHHHHHHHH
Q 015095 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID-NDIA--VIDKSFGFDTAVEEAQRAINAAHV 301 (413)
Q Consensus 225 iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTID-NDI~--gtD~S~GFdTAv~~~~~~i~~i~~ 301 (413)
+.+.+..+++|++++.| ...... +.+.+.+.++ |+|.+=.+.+ .+++ ++|.--|...|++...+
T Consensus 106 ~~~~l~~~~vdGiIi~~-~~~~~~---~~~~l~~~~~--P~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~------- 172 (333)
T COG1609 106 YLETLLQKRVDGLILLG-ERPNDS---LLELLAAAGI--PVVVIDRSPPGLGVPSVGIDNFAGAYLATEHLIE------- 172 (333)
T ss_pred HHHHHHHcCCCEEEEec-CCCCHH---HHHHHHhcCC--CEEEEeCCCccCCCCEEEEChHHHHHHHHHHHHH-------
Confidence 89999999999999999 222222 2333344454 4555544333 3332 23433333333333222
Q ss_pred hhhccCCcEEEEEc-------CCCCcchHHHHHhhhcCCcc--EEEcCCCCCCCCChhhHHHHHHHHHHhC---CcEEEE
Q 015095 302 EVESVENGVGIVKL-------MGRYSGFISMYATLASRDVD--CCLIPESPFYLEGPGGLFEFIERQLKEN---GHMVIV 369 (413)
Q Consensus 302 ~A~s~~~rv~iVEv-------MGR~sG~LA~~aaLA~~~ad--~ilIPE~pf~l~~~~~~~e~i~~r~~~~---~~~vIv 369 (413)
.++ +++.++-. .-|..||+.+.... +.. -.++.+..|+.+ .-.+.+++-+... --++++
T Consensus 173 --~G~-~~i~~i~~~~~~~~~~~R~~Gf~~al~~~---~~~~~~~~i~~~~~~~~---~g~~~~~~ll~~~~~~ptAif~ 243 (333)
T COG1609 173 --LGH-RRIAFIGGPLDSSASRERLEGYRAALREA---GLPINPEWIVEGDFSEE---SGYEAAERLLARGEPRPTAIFC 243 (333)
T ss_pred --CCC-ceEEEEeCCCccccHhHHHHHHHHHHHHC---CCCCCcceEEecCCChH---HHHHHHHHHHhcCCCCCcEEEE
Confidence 233 44555432 33456787655443 333 466677777555 4445555555443 235665
Q ss_pred EeC
Q 015095 370 VAE 372 (413)
Q Consensus 370 vaE 372 (413)
.+.
T Consensus 244 ~nD 246 (333)
T COG1609 244 AND 246 (333)
T ss_pred cCc
Confidence 554
No 76
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=72.05 E-value=7.7 Score=39.61 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=43.6
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc-------------CCCceeeeeeccccCC
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTIDND 275 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~-------------~~~i~vvgIPkTIDND 275 (413)
+.++++++.+++.+.|.++-|||--.+..|+.++-..... .-.+++|.||-|-..+
T Consensus 67 ~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtg 135 (370)
T cd08551 67 SNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTG 135 (370)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcch
Confidence 4578899999999999999999999999998876543110 1147899999997444
No 77
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=71.15 E-value=3.3 Score=35.81 Aligned_cols=65 Identities=20% Similarity=0.312 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHhC-CcEEEEEcCCcchHHHHHHHHHHHHcCC--CceeeeeeccccCCCcccccccCchhHHHH
Q 015095 221 DTNKIVDNIEDRG-INQVYIIGGDGTQKGAALIYKEVEKRGL--QVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (413)
Q Consensus 221 d~~~iv~~l~~~~-Id~LivIGGdgS~~~a~~L~e~~~~~~~--~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~ 291 (413)
..+.+....+..+ .+.++++|||||+..+.. .+.+... ++++..||.==-||+. +++|+.+-...
T Consensus 41 ~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~---~l~~~~~~~~~~l~iiP~GT~N~~a---r~lg~~~~~~~ 108 (130)
T PF00781_consen 41 HAEALARILALDDYPDVIVVVGGDGTLNEVVN---GLMGSDREDKPPLGIIPAGTGNDFA---RSLGIPSDPEA 108 (130)
T ss_dssp HHHHHHHHHHHTTS-SEEEEEESHHHHHHHHH---HHCTSTSSS--EEEEEE-SSS-HHH---HHTT--SSHHH
T ss_pred hHHHHHHHHhhccCccEEEEEcCccHHHHHHH---HHhhcCCCccceEEEecCCChhHHH---HHcCCCCCcHH
Confidence 3444554333334 389999999999876543 3333332 4589999987777765 46777666655
No 78
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=70.94 E-value=7.6 Score=39.40 Aligned_cols=52 Identities=23% Similarity=0.320 Sum_probs=43.2
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCC
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI 276 (413)
.+..++++.+++++.|.++-|||--.+..|+.++-. ..+++|.||-|--.+-
T Consensus 64 ~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~-----~~~P~iaIPTTagTgs 115 (351)
T cd08170 64 AEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADY-----LGAPVVIVPTIASTDA 115 (351)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHH-----cCCCEEEeCCccccCc
Confidence 456788999999999999999999999999988753 2578999999865554
No 79
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=70.59 E-value=38 Score=33.87 Aligned_cols=117 Identities=21% Similarity=0.227 Sum_probs=63.9
Q ss_pred cCCCCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC
Q 015095 140 FKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG 219 (413)
Q Consensus 140 ~~~~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~ 219 (413)
.+.-+.||||||| -..+|+..+++.+-+ .++..+++-+.-=++| .
T Consensus 10 lP~~p~~I~vITs-~~gAa~~D~~~~~~~----r~~~~~~~~~p~~vQG------------------------------~ 54 (319)
T PF02601_consen 10 LPKFPKRIAVITS-PTGAAIQDFLRTLKR----RNPIVEIILYPASVQG------------------------------E 54 (319)
T ss_pred CCCCCCEEEEEeC-CchHHHHHHHHHHHH----hCCCcEEEEEeccccc------------------------------c
Confidence 3455679999998 456666666666543 3554444433221111 1
Q ss_pred CcHHHHHHHHHHh-------CCcEEEEEcCCcchHHHHHHHHHHHHc---CCCcee-eeeeccccCCCc--ccccccCch
Q 015095 220 HDTNKIVDNIEDR-------GINQVYIIGGDGTQKGAALIYKEVEKR---GLQVAV-AGIPKTIDNDIA--VIDKSFGFD 286 (413)
Q Consensus 220 ~d~~~iv~~l~~~-------~Id~LivIGGdgS~~~a~~L~e~~~~~---~~~i~v-vgIPkTIDNDI~--gtD~S~GFd 286 (413)
.-...|++.|++. ++|.++++=|-||...-..+.++.-.+ ..++|| .||=-.+|.=|. .-|...--.
T Consensus 55 ~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~PvisaIGHe~D~ti~D~vAd~ra~TP 134 (319)
T PF02601_consen 55 GAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISAIGHETDFTIADFVADLRAPTP 134 (319)
T ss_pred chHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEecCCCCCchHHHHHHHhhCCCH
Confidence 1133444444443 399999999999987755443332211 344444 466666555441 234555566
Q ss_pred hHHHH
Q 015095 287 TAVEE 291 (413)
Q Consensus 287 TAv~~ 291 (413)
||+-+
T Consensus 135 taaAe 139 (319)
T PF02601_consen 135 TAAAE 139 (319)
T ss_pred HHHHH
Confidence 65544
No 80
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=70.06 E-value=8.4 Score=39.31 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=42.5
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCC
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI 276 (413)
+..+++++.+++.+.|.++-|||--.+..|..++ + .++ +++|.||-|...|-
T Consensus 74 ~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA-~--~rg--ip~I~IPTT~~tds 125 (350)
T PRK00843 74 EEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAA-Y--RLG--IPFISVPTAASHDG 125 (350)
T ss_pred HHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHH-H--hcC--CCEEEeCCCccCCc
Confidence 4578899999999999999999999999888776 2 234 67999999976553
No 81
>PRK12361 hypothetical protein; Provisional
Probab=69.94 E-value=13 Score=40.32 Aligned_cols=60 Identities=22% Similarity=0.371 Sum_probs=42.7
Q ss_pred CCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCccccccc-Cch
Q 015095 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSF-GFD 286 (413)
Q Consensus 219 ~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~-GFd 286 (413)
..+..++++...+.+.|.++++|||||...+.. .+. +.++++..||.==-||+. +++ |..
T Consensus 283 ~~~a~~la~~~~~~~~d~Viv~GGDGTl~ev~~---~l~--~~~~~lgiiP~GTgNdfA---r~L~gi~ 343 (547)
T PRK12361 283 EISAEALAKQARKAGADIVIACGGDGTVTEVAS---ELV--NTDITLGIIPLGTANALS---HALFGLG 343 (547)
T ss_pred CccHHHHHHHHHhcCCCEEEEECCCcHHHHHHH---HHh--cCCCCEEEecCCchhHHH---HHhcCCC
Confidence 345677777777788999999999999877653 222 234678889987778776 344 544
No 82
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=69.55 E-value=8.2 Score=38.65 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=43.5
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCC
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDND 275 (413)
...+++++.+++.+.|.++-|||--.+..|..++-... + .+++|.||-|...+
T Consensus 65 ~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~-~--~~p~i~iPTt~~tg 117 (332)
T cd07766 65 EEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLN-R--GLPIIIVPTTAATG 117 (332)
T ss_pred HHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhc-C--CCCEEEEeCCCchh
Confidence 35678899999999999999999999999888876532 2 46799999987665
No 83
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=69.38 E-value=9.4 Score=38.65 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=42.1
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCC
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDND 275 (413)
+..+++++.+++.+.|.++-|||--.++.|..++-.. .+++|.||-|-..+
T Consensus 64 ~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~-----~~p~i~IPTtatgs 114 (337)
T cd08177 64 EVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRT-----GLPIIAIPTTLSGS 114 (337)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----cCCEEEEcCCchhh
Confidence 3578899999999999999999999999998887432 57899999886443
No 84
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=69.27 E-value=5.5 Score=40.46 Aligned_cols=65 Identities=26% Similarity=0.436 Sum_probs=47.4
Q ss_pred CcHHHHHHHHHHhCC---cEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHH
Q 015095 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (413)
Q Consensus 220 ~d~~~iv~~l~~~~I---d~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~ 290 (413)
+..+++++.+++.++ |.++-|||--.+..|..++-.. .++ +++|.||-|. +..+|.+.|--|+++
T Consensus 69 ~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~rg--ip~i~VPTT~---~a~vds~~~~k~~i~ 136 (345)
T cd08195 69 ETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFVAATY-MRG--IDFIQIPTTL---LAQVDSSVGGKTGVN 136 (345)
T ss_pred HHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHHHHHH-hcC--CCeEEcchhH---HHHhhccCCCcceec
Confidence 457889999999998 9999999999999888776422 234 6799999997 223344555444443
No 85
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=68.28 E-value=63 Score=30.01 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=41.0
Q ss_pred CCCCcHHHHHHHHHH---hCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeecc
Q 015095 217 RGGHDTNKIVDNIED---RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (413)
Q Consensus 217 R~~~d~~~iv~~l~~---~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkT 271 (413)
.+..|+.-+++.++- .++|.++++-||+-+.- |.+.++++|..+-++|.|+.
T Consensus 86 kG~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~---Lv~~lre~G~~V~v~g~~~~ 140 (160)
T TIGR00288 86 AGDVDVRMAVEAMELIYNPNIDAVALVTRDADFLP---VINKAKENGKETIVIGAEPG 140 (160)
T ss_pred cCcccHHHHHHHHHHhccCCCCEEEEEeccHhHHH---HHHHHHHCCCEEEEEeCCCC
Confidence 335788888888776 69999999999999965 56667778988888887653
No 86
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=68.23 E-value=11 Score=38.88 Aligned_cols=52 Identities=17% Similarity=0.150 Sum_probs=41.0
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc--------------CCCceeeeeecc
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR--------------GLQVAVAGIPKT 271 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~--------------~~~i~vvgIPkT 271 (413)
...+++++.+++++.|.++-|||--.++.|..++-.+... ...+++|.||-|
T Consensus 71 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 136 (383)
T cd08186 71 DQVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLT 136 (383)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCC
Confidence 3578899999999999999999999999988876543211 124789999986
No 87
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=67.93 E-value=13 Score=38.17 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=41.8
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcC--------------CCceeeeeeccc
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG--------------LQVAVAGIPKTI 272 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~--------------~~i~vvgIPkTI 272 (413)
...+++++.+++.+.|.++-|||--.+..|..++-....-+ -.+++|.||-|-
T Consensus 70 ~~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 136 (374)
T cd08189 70 ENVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTA 136 (374)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCC
Confidence 34788999999999999999999999999987765432111 136899999986
No 88
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=67.23 E-value=7 Score=40.18 Aligned_cols=66 Identities=33% Similarity=0.472 Sum_probs=49.7
Q ss_pred CcHHHHHHHHHHhCC----cEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHH
Q 015095 220 HDTNKIVDNIEDRGI----NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (413)
Q Consensus 220 ~d~~~iv~~l~~~~I----d~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~ 291 (413)
...+++++.+.+.++ |.++-|||--.+..|..++-.. .++ +++|.||-|. +..+|-+.|.-++++.
T Consensus 71 ~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~-~rg--~p~i~VPTT~---lA~vD~~~g~K~~i~~ 140 (354)
T cd08199 71 DTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGLAASLY-RRG--TPYVRIPTTL---VGLIDAGVGIKTGVNF 140 (354)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-cCC--CCEEEEcCcc---ceeeecCCCCceEEeC
Confidence 457888899999999 9999999998888888776432 234 6899999996 3445666666666553
No 89
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=66.48 E-value=7.9 Score=39.60 Aligned_cols=50 Identities=22% Similarity=0.394 Sum_probs=40.2
Q ss_pred CcHHHHHHHHHHhCC---cEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccc
Q 015095 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (413)
Q Consensus 220 ~d~~~iv~~l~~~~I---d~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTI 272 (413)
+..+++++.+++.++ |.++-|||--.+..|..++-.. .++ +++|.||-|.
T Consensus 76 ~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~g--ip~i~IPTT~ 128 (358)
T PRK00002 76 ETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFAAATY-MRG--IRFIQVPTTL 128 (358)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHHHHHh-cCC--CCEEEcCchh
Confidence 457888999999887 9999999999999888776421 234 6799999996
No 90
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=66.38 E-value=1.3e+02 Score=29.27 Aligned_cols=86 Identities=15% Similarity=0.225 Sum_probs=51.9
Q ss_pred eeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcHHH
Q 015095 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (413)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~~ 224 (413)
..||++...-.-|-.+.++.++...+.. ++ ..++- .-+........+
T Consensus 65 ~~Igvv~~~~~~~~~~~i~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~~ 111 (342)
T PRK10014 65 GVIGLIVRDLSAPFYAELTAGLTEALEA-QG-RMVFL-------------------------------LQGGKDGEQLAQ 111 (342)
T ss_pred CEEEEEeCCCccchHHHHHHHHHHHHHH-cC-CEEEE-------------------------------EeCCCCHHHHHH
Confidence 4789998766678888888888877653 22 12211 001111223457
Q ss_pred HHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 225 iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
.++.|...++|++++.+.+.... .+.+.+++.+ +|+|.+
T Consensus 112 ~~~~l~~~~vdgiIi~~~~~~~~---~~~~~l~~~~--iPvV~~ 150 (342)
T PRK10014 112 RFSTLLNQGVDGVVIAGAAGSSD---DLREMAEEKG--IPVVFA 150 (342)
T ss_pred HHHHHHhCCCCEEEEeCCCCCcH---HHHHHHhhcC--CCEEEE
Confidence 77888889999999998765322 2333444445 455544
No 91
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=65.69 E-value=13 Score=38.22 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=41.2
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH-------------cCCCceeeeeeccc
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTI 272 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~-------------~~~~i~vvgIPkTI 272 (413)
+..+++++.+++.++|.++-|||--.+..|+.++-.... ....+++|.||-|-
T Consensus 67 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTta 132 (375)
T cd08194 67 ESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTTA 132 (375)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence 457889999999999999999999999998877632110 12347899999875
No 92
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=65.06 E-value=14 Score=37.93 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=41.0
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH----------------cCCCceeeeeeccc
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK----------------RGLQVAVAGIPKTI 272 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~----------------~~~~i~vvgIPkTI 272 (413)
+..+++++.+++.++|.++-|||--++..|+.++-.... ....+++|.||-|-
T Consensus 68 ~~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTta 136 (375)
T cd08179 68 ETVLKGAEAMREFEPDWIIALGGGSPIDAAKAMWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTS 136 (375)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCC
Confidence 357889999999999999999999999999887632110 01246899999875
No 93
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=64.84 E-value=13 Score=37.68 Aligned_cols=50 Identities=18% Similarity=0.426 Sum_probs=40.3
Q ss_pred CcHHHHHHHHHHhCC---cEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccc
Q 015095 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (413)
Q Consensus 220 ~d~~~iv~~l~~~~I---d~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTI 272 (413)
...+++++.+++++. |.++.|||--.+..|..++-.. .++ ++++.||-|.
T Consensus 65 ~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~~--~p~i~VPTT~ 117 (344)
T TIGR01357 65 ETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFVAATY-MRG--IRFIQVPTTL 117 (344)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHHHHHH-ccC--CCEEEecCch
Confidence 347888999999988 8999999999999888776432 234 6799999997
No 94
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=63.87 E-value=85 Score=29.91 Aligned_cols=84 Identities=17% Similarity=0.048 Sum_probs=48.4
Q ss_pred eEEEEccCCC-CchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcHHH
Q 015095 146 RACIVTCGGL-CPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (413)
Q Consensus 146 ~iaIvtsGG~-apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~~ 224 (413)
||+|+....| ..|+...++.+++.+.+......++....+.......... ++..............
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 67 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQ-------------EVVRVIVLDNPLDYRR 67 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCcc-------------cceeeeecCCchhHHH
Confidence 6888887666 7899999999999987543333444443333222111100 1111111111234566
Q ss_pred HHHHHHHhCCcEEEEEcC
Q 015095 225 IVDNIEDRGINQVYIIGG 242 (413)
Q Consensus 225 iv~~l~~~~Id~LivIGG 242 (413)
+.+.+++.+.|.+++.-.
T Consensus 68 ~~~~~~~~~~dii~~~~~ 85 (366)
T cd03822 68 AARAIRLSGPDVVVIQHE 85 (366)
T ss_pred HHHHHhhcCCCEEEEeec
Confidence 777788888998777543
No 95
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=63.69 E-value=15 Score=37.51 Aligned_cols=53 Identities=23% Similarity=0.192 Sum_probs=41.5
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHH------------HcCCCceeeeeeccc
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVE------------KRGLQVAVAGIPKTI 272 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~------------~~~~~i~vvgIPkTI 272 (413)
+..+++++.+++.+.|.++-|||--+++.|+.++-... ...-.+++|.||-|-
T Consensus 70 ~~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTta 134 (357)
T cd08181 70 ETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTA 134 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCC
Confidence 45788999999999999999999999999987763211 012247899999986
No 96
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=63.59 E-value=15 Score=37.92 Aligned_cols=56 Identities=20% Similarity=0.185 Sum_probs=42.4
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc---------------CCCceeeeeeccccCC
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR---------------GLQVAVAGIPKTIDND 275 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~---------------~~~i~vvgIPkTIDND 275 (413)
+..+++++.+++.+.|.++-|||--.++.|+.++-....- .-.+++|.||-|--..
T Consensus 73 ~~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagTG 143 (379)
T TIGR02638 73 TVVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTAGTA 143 (379)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCCchh
Confidence 3567899999999999999999999999987765422111 1247899999986443
No 97
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=62.78 E-value=1.3e+02 Score=28.00 Aligned_cols=127 Identities=10% Similarity=0.086 Sum_probs=66.9
Q ss_pred eEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC-CcHHH
Q 015095 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDTNK 224 (413)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~-~d~~~ 224 (413)
+||++...-..|-...+++++.+.+.....+..+ .+..+... ....+
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~ 48 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKV--------------------------------TVVSADYDLNKQVS 48 (271)
T ss_pred CeEEEecccCCHHHHHHHHHHHHHHHHhCCCeEE--------------------------------EEccCCCCHHHHHH
Confidence 3778887667788888888888777532111111 11112222 22346
Q ss_pred HHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHHHHhhh
Q 015095 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVE 304 (413)
Q Consensus 225 iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i~~~A~ 304 (413)
+++.+...++|++++.+.+.. ......+.+.+++ ++||.+-. +.+..+.++|+|.. .....+.+.+.....
T Consensus 49 ~i~~~~~~~~dgiIi~~~~~~--~~~~~i~~~~~~~--ipvv~~~~----~~~~~~~~V~~d~~-~~g~~~~~~l~~~~~ 119 (271)
T cd06321 49 QIDNFIAAKVDLILLNAVDSK--GIAPAVKRAQAAG--IVVVAVDV----AAEGADATVTTDNV-QAGEISCQYLADRLG 119 (271)
T ss_pred HHHHHHHhCCCEEEEeCCChh--HhHHHHHHHHHCC--CeEEEecC----CCCCccceeeechH-HHHHHHHHHHHHHhC
Confidence 777788899999999876542 1122234444545 55666632 22233456666642 222233333332222
Q ss_pred ccCCcEEEEE
Q 015095 305 SVENGVGIVK 314 (413)
Q Consensus 305 s~~~rv~iVE 314 (413)
.+ +++.++-
T Consensus 120 g~-~~i~~i~ 128 (271)
T cd06321 120 GK-GNVAILN 128 (271)
T ss_pred CC-ceEEEEe
Confidence 43 4677774
No 98
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=62.78 E-value=15 Score=38.26 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=41.3
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc-------------CCCceeeeeeccc
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTI 272 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~-------------~~~i~vvgIPkTI 272 (413)
...++.++.+++.+.|.++-|||--+++.|+.++-..... .-.+++|.||-|-
T Consensus 93 ~~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTta 158 (395)
T PRK15454 93 TDVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTTA 158 (395)
T ss_pred HHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCCC
Confidence 3467889999999999999999999999998875432111 1247899999874
No 99
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=62.53 E-value=15 Score=37.50 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=42.4
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH-----------------cCCCceeeeeecccc
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-----------------RGLQVAVAGIPKTID 273 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~-----------------~~~~i~vvgIPkTID 273 (413)
+..+++++.+++.++|.++-|||--.+..|..++-.... ..-.+++|.||-|--
T Consensus 64 ~~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtag 134 (367)
T cd08182 64 EDLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAG 134 (367)
T ss_pred HHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCC
Confidence 347789999999999999999999999998887654211 113478999999864
No 100
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=62.25 E-value=15 Score=37.62 Aligned_cols=51 Identities=27% Similarity=0.369 Sum_probs=42.0
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCC
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI 276 (413)
..+++++.+++++.|.++-|||--.+..|..++-. ..+++|.||-|--.|-
T Consensus 72 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~-----~~~p~i~IPTtagtgS 122 (366)
T PRK09423 72 EIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADY-----LGVPVVIVPTIASTDA 122 (366)
T ss_pred HHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHH-----cCCCEEEeCCccccCc
Confidence 46788999999999999999999999998888742 2478999999865443
No 101
>PLN02834 3-dehydroquinate synthase
Probab=61.94 E-value=9.6 Score=40.43 Aligned_cols=63 Identities=24% Similarity=0.360 Sum_probs=45.1
Q ss_pred CcHHHHHHHHHHhCCc---EEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhH
Q 015095 220 HDTNKIVDNIEDRGIN---QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA 288 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id---~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTA 288 (413)
+.++++++.+.++++| .++-|||--.+..|..++-.. .+| +++|.||-|. +..+|.+.|--++
T Consensus 147 ~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y-~rg--iplI~VPTTl---lA~vDss~ggK~~ 212 (433)
T PLN02834 147 ETLMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAAASY-QRG--VNFVQIPTTV---MAQVDSSVGGKTG 212 (433)
T ss_pred HHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHHHHHHHh-cCC--CCEEEECCcC---CeEEecCCCceeE
Confidence 3467888999999998 999999999988887665322 234 6899999994 3334444443333
No 102
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=61.90 E-value=14 Score=37.51 Aligned_cols=53 Identities=17% Similarity=0.225 Sum_probs=43.4
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCc
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 277 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~ 277 (413)
+...++++.+++.+.|.++-|||--.+..|..++.. ..+++|.||-|-..+-.
T Consensus 64 ~~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~-----~~~p~i~VPTtagtgse 116 (349)
T cd08550 64 EEVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADR-----LDKPIVIVPTIASTCAA 116 (349)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHH-----cCCCEEEeCCccccCcc
Confidence 357888999999999999999999999999988743 24679999998766643
No 103
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=61.85 E-value=20 Score=37.28 Aligned_cols=34 Identities=12% Similarity=0.293 Sum_probs=30.5
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHH
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIY 253 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~ 253 (413)
...+++++.+++.++|.++-|||--++..|..++
T Consensus 65 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~iA 98 (398)
T cd08178 65 ETVRKGLELMNSFKPDTIIALGGGSPMDAAKIMW 98 (398)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 3578899999999999999999999999998876
No 104
>PRK15138 aldehyde reductase; Provisional
Probab=61.54 E-value=15 Score=38.24 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=40.6
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc----------------CCCceeeeeecc
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR----------------GLQVAVAGIPKT 271 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~----------------~~~i~vvgIPkT 271 (413)
+..+++++.+++.+.|.++-|||--++..|+.++-..... .-.+++|.||-|
T Consensus 72 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTT 139 (387)
T PRK15138 72 ETLMKAVKLVREEKITFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILETGGKEIKSAIPMGSVLTL 139 (387)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHHhccCCCcCCCCCEEEEecC
Confidence 4578899999999999999999999999998876432110 123689999987
No 105
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=61.14 E-value=17 Score=37.38 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=41.7
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH-------------cCCCceeeeeeccc
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTI 272 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~-------------~~~~i~vvgIPkTI 272 (413)
..++++++.+++.++|.++-|||--.+..|..++-.... ..-.+++|.||-|-
T Consensus 70 ~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTa 135 (376)
T cd08193 70 AVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTA 135 (376)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCC
Confidence 357889999999999999999999999998877653211 01257899999984
No 106
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=61.03 E-value=11 Score=38.65 Aligned_cols=66 Identities=20% Similarity=0.366 Sum_probs=47.9
Q ss_pred CcHHHHHHHHHHhCC---cEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHH
Q 015095 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (413)
Q Consensus 220 ~d~~~iv~~l~~~~I---d~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~ 291 (413)
+..+++++.+.+.+. |.++.|||--++..|..++-. -.+| ++.+.||.|.- ..+|-++|.-|++|.
T Consensus 60 ~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA~~-~~rg--i~~i~iPTTll---a~vds~ig~k~~vn~ 128 (346)
T cd08196 60 EAVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVASI-YMRG--VSWSFVPTTLL---AQVDSCIGSKSSINV 128 (346)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHH-HHcC--CCeEEecccHH---HhhhccccccceecC
Confidence 346889999999999 899999999888888877643 2356 46899999862 233455555555553
No 107
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=60.35 E-value=41 Score=30.83 Aligned_cols=87 Identities=22% Similarity=0.340 Sum_probs=54.3
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcHH
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~ 223 (413)
..++.++ |+. |+ ++..++..+.+.|++.++.|.++||-+..+. .+.++.|...+-.++=.+=+.+.-|
T Consensus 46 ~~~v~ll--G~~-~~---~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~------~~i~~~I~~~~pdiv~vglG~PkQE 113 (171)
T cd06533 46 GLRVFLL--GAK-PE---VLEKAAERLRARYPGLKIVGYHHGYFGPEEE------EEIIERINASGADILFVGLGAPKQE 113 (171)
T ss_pred CCeEEEE--CCC-HH---HHHHHHHHHHHHCCCcEEEEecCCCCChhhH------HHHHHHHHHcCCCEEEEECCCCHHH
Confidence 4577776 444 43 5555556666779999999999999874322 1256667666665554444434445
Q ss_pred HHHHHHHH-hCCcEEEEEcC
Q 015095 224 KIVDNIED-RGINQVYIIGG 242 (413)
Q Consensus 224 ~iv~~l~~-~~Id~LivIGG 242 (413)
..+...++ .+...++.+||
T Consensus 114 ~~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 114 LWIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred HHHHHHHHHCCCCEEEEece
Confidence 55444444 45677788888
No 108
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=60.16 E-value=16 Score=37.60 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=41.7
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH------------------cCCCceeeeeecccc
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK------------------RGLQVAVAGIPKTID 273 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~------------------~~~~i~vvgIPkTID 273 (413)
+..+++++.+++.++|.++-|||--.+..|+.++-.... ..-.+++|.||-|--
T Consensus 70 ~~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtag 141 (380)
T cd08185 70 TTVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAG 141 (380)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCCh
Confidence 357788899999999999999999999999887643210 012478999998763
No 109
>PRK10586 putative oxidoreductase; Provisional
Probab=59.99 E-value=12 Score=38.54 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCccccc
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDK 281 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~ 281 (413)
+.+++.+..+ .+.|.++-|||--++..|+.++.. ..++++.||-|-.+|-+.+..
T Consensus 75 ~v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~-----~~~p~i~vPT~a~t~s~~s~~ 129 (362)
T PRK10586 75 DVAQLAAASG-DDRQVVIGVGGGALLDTAKALARR-----LGLPFVAIPTIAATCAAWTPL 129 (362)
T ss_pred HHHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhh-----cCCCEEEEeCCccccccccCc
Confidence 4455655544 578999999999999999988753 357899999998887654433
No 110
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=59.47 E-value=1.3e+02 Score=27.95 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
..+.++.|...++|++++++.+.+... .+.+++.+ +++|.+
T Consensus 44 ~~~~~~~l~~~~vdgiii~~~~~~~~~----~~~l~~~~--iPvv~~ 84 (268)
T cd06273 44 EYAQARKLLERGVDGLALIGLDHSPAL----LDLLARRG--VPYVAT 84 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHH----HHHHHhCC--CCEEEE
Confidence 346677788889999999987654322 23344445 556654
No 111
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=59.06 E-value=22 Score=36.82 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=41.8
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH-------------cCCCceeeeeeccc
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTI 272 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~-------------~~~~i~vvgIPkTI 272 (413)
...+++++.+++.+.|.++-|||--++..|+.++-.... ....+++|.||-|=
T Consensus 75 ~~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTa 140 (383)
T PRK09860 75 ENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTA 140 (383)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCC
Confidence 357899999999999999999999999999887642111 02357899999876
No 112
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=58.21 E-value=18 Score=37.27 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=40.7
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHH--------Hc-------CCCceeeeeecccc
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVE--------KR-------GLQVAVAGIPKTID 273 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~--------~~-------~~~i~vvgIPkTID 273 (413)
+...++++.+++.++|.++-|||--+++.|+.++-... ++ .-.+++|.||-|--
T Consensus 74 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTag 142 (382)
T PRK10624 74 EVVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAG 142 (382)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCc
Confidence 34678889999999999999999999999876653211 11 12478999998853
No 113
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=58.18 E-value=22 Score=36.53 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=42.2
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH-------------cCCCceeeeeeccccC
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTIDN 274 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~-------------~~~~i~vvgIPkTIDN 274 (413)
+..+++++.+++.+.|.++-|||--.++.|+.++-.... ....+++|.||-|--.
T Consensus 72 ~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagT 139 (377)
T cd08176 72 TNVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGT 139 (377)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcc
Confidence 347889999999999999999999999999887632111 1235789999988643
No 114
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=57.80 E-value=17 Score=37.37 Aligned_cols=64 Identities=23% Similarity=0.353 Sum_probs=46.6
Q ss_pred CcHHHHHHHHHHhCCc---EEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHH
Q 015095 220 HDTNKIVDNIEDRGIN---QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 289 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id---~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv 289 (413)
...+++++.++++++| .++-|||--.+..|..++-.. .++ +++|.||-|. ...+|-++|--+++
T Consensus 68 ~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~-~rg--ip~I~IPTTl---la~~da~i~~k~~v 134 (355)
T cd08197 68 STLSDLVERALALGATRRSVIVALGGGVVGNIAGLLAALL-FRG--IRLVHIPTTL---LAQSDSVLSLKQAV 134 (355)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-ccC--CCEEEecCcc---cccccccccCceee
Confidence 3478899999999999 999999988888887766432 234 6799999985 33455555544443
No 115
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=57.63 E-value=1.7e+02 Score=27.43 Aligned_cols=47 Identities=13% Similarity=0.266 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccc
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTI 272 (413)
..+.++.+..+++|++++.+.+.+. .....+++.+++ ++||.+-..+
T Consensus 46 ~~~~i~~l~~~~vdgiIi~~~~~~~--~~~~~~~~~~~~--iPvV~~~~~~ 92 (275)
T cd06320 46 QLSIAENMINKGYKGLLFSPISDVN--LVPAVERAKKKG--IPVVNVNDKL 92 (275)
T ss_pred HHHHHHHHHHhCCCEEEECCCChHH--hHHHHHHHHHCC--CeEEEECCCC
Confidence 3567888888999999887655332 112234455545 5677664433
No 116
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=57.25 E-value=1.2e+02 Score=28.64 Aligned_cols=91 Identities=22% Similarity=0.351 Sum_probs=60.3
Q ss_pred EEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccC---------CCeeeCChhhHhhhhhcCCceeeecCC
Q 015095 148 CIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS---------KNTLTLSPKVVNDIHKRGGTILRTSRG 218 (413)
Q Consensus 148 aIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~---------~~~~~Lt~~~V~~i~~~GGs~LGTsR~ 218 (413)
+++.+||+.+-.... ..+. .....++++-.|..=|++ +++--++++..+.+...|-.+.-....
T Consensus 1 ~~Ii~~g~~~~~~~~-----~~~~--~~~~~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~~ 73 (208)
T cd07995 1 ALILLGGPLPDSPLL-----LKLW--KKADLIIAADGGANHLLDLGIVPDLIIGDFDSISPEVLEYYKSKGVEIIHFPDE 73 (208)
T ss_pred CEEEECCcCCcchhH-----HHhh--ccCCEEEEEChHHHHHHHcCCCCCEEEecCcCCCHHHHHHHHhcCCeEEECCCC
Confidence 356778887744433 2222 233578999999876654 344456666666665553334433332
Q ss_pred --CCcHHHHHHHHHHhCCcEEEEEcCCcc
Q 015095 219 --GHDTNKIVDNIEDRGINQVYIIGGDGT 245 (413)
Q Consensus 219 --~~d~~~iv~~l~~~~Id~LivIGGdgS 245 (413)
.-|++++++.+.+++.+-++++|+.|.
T Consensus 74 KD~TD~e~Al~~~~~~~~~~i~i~Ga~Gg 102 (208)
T cd07995 74 KDFTDFEKALKLALERGADEIVILGATGG 102 (208)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEEccCCC
Confidence 247999999999999999999999996
No 117
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=56.93 E-value=20 Score=36.44 Aligned_cols=50 Identities=14% Similarity=0.302 Sum_probs=40.8
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccC
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDN 274 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDN 274 (413)
...+++++..++.+.|.++-|||--.+..|+.++-. +.+++|.||-|-..
T Consensus 65 ~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~-----~~~p~i~VPTt~gt 114 (345)
T cd08171 65 ENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADK-----LGKPVFTFPTIASN 114 (345)
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHH-----cCCCEEEecCcccc
Confidence 346788888999999999999999999999888754 24689999987533
No 118
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=55.89 E-value=93 Score=32.71 Aligned_cols=117 Identities=20% Similarity=0.199 Sum_probs=64.3
Q ss_pred cCCCCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC
Q 015095 140 FKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG 219 (413)
Q Consensus 140 ~~~~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~ 219 (413)
.+.-+.|||||||- ..+|+..+++.+ .+.++..+++-+.-=++| .
T Consensus 131 lP~~p~~I~viTs~-~gAa~~D~~~~~----~~r~p~~~~~~~~~~vQG------------------------------~ 175 (438)
T PRK00286 131 LPFFPKRIGVITSP-TGAAIRDILTVL----RRRFPLVEVIIYPTLVQG------------------------------E 175 (438)
T ss_pred CCCCCCEEEEEeCC-ccHHHHHHHHHH----HhcCCCCeEEEecCcCcC------------------------------c
Confidence 33446799999973 345555555554 444554455443321111 1
Q ss_pred CcHHHHHHHHHHh---CCcEEEEEcCCcchHHHHHHHHHHHHc---CCCceee-eeeccccCCCc--ccccccCchhHHH
Q 015095 220 HDTNKIVDNIEDR---GINQVYIIGGDGTQKGAALIYKEVEKR---GLQVAVA-GIPKTIDNDIA--VIDKSFGFDTAVE 290 (413)
Q Consensus 220 ~d~~~iv~~l~~~---~Id~LivIGGdgS~~~a~~L~e~~~~~---~~~i~vv-gIPkTIDNDI~--gtD~S~GFdTAv~ 290 (413)
.-...|++.|+.. ++|.++++=|-||...-..+.++.-.+ ..++||| ||=--+|.=|. .-|...--.||+-
T Consensus 176 ~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~IGHE~D~tl~D~vAd~ra~TPtaaa 255 (438)
T PRK00286 176 GAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISAVGHETDFTIADFVADLRAPTPTAAA 255 (438)
T ss_pred cHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEeccCCCCccHHHHhhhccCCChHHHH
Confidence 1234455555443 369999999999987754433332111 4455544 66666665552 3456666677765
Q ss_pred H
Q 015095 291 E 291 (413)
Q Consensus 291 ~ 291 (413)
+
T Consensus 256 e 256 (438)
T PRK00286 256 E 256 (438)
T ss_pred H
Confidence 4
No 119
>PRK05637 anthranilate synthase component II; Provisional
Probab=55.51 E-value=30 Score=32.90 Aligned_cols=53 Identities=19% Similarity=0.353 Sum_probs=36.8
Q ss_pred HHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHH
Q 015095 227 DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEA 292 (413)
Q Consensus 227 ~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~ 292 (413)
+.+.+.+.+++++-||-|+...+....+.+++..-++||.|| |+|++.-....
T Consensus 38 ~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGI-------------ClG~Qlla~al 90 (208)
T PRK05637 38 EEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGI-------------CLGFQALLEHH 90 (208)
T ss_pred HHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEE-------------cHHHHHHHHHc
Confidence 445567899999999999987765443444322225778888 99988666553
No 120
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=55.47 E-value=1e+02 Score=32.64 Aligned_cols=118 Identities=15% Similarity=0.157 Sum_probs=64.7
Q ss_pred cCCCCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC
Q 015095 140 FKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG 219 (413)
Q Consensus 140 ~~~~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~ 219 (413)
.+.-+.|||||||- ..+++..+++.+ ...++..+++-+.- .| +|-
T Consensus 125 lP~~p~~i~vits~-~~aa~~D~~~~~----~~r~p~~~~~~~~~----------------~v-----QG~--------- 169 (432)
T TIGR00237 125 LPHFPKRVGVITSQ-TGAALADILHIL----KRRDPSLKVVIYPT----------------LV-----QGE--------- 169 (432)
T ss_pred CCCCCCEEEEEeCC-ccHHHHHHHHHH----HhhCCCceEEEecc----------------cc-----cCc---------
Confidence 34456799999973 345555555544 44455445542211 11 111
Q ss_pred CcHHHHHHHHH---Hh-CCcEEEEEcCCcchHHHHHHHHHHHHc---CCCceee-eeeccccCCCc--ccccccCchhHH
Q 015095 220 HDTNKIVDNIE---DR-GINQVYIIGGDGTQKGAALIYKEVEKR---GLQVAVA-GIPKTIDNDIA--VIDKSFGFDTAV 289 (413)
Q Consensus 220 ~d~~~iv~~l~---~~-~Id~LivIGGdgS~~~a~~L~e~~~~~---~~~i~vv-gIPkTIDNDI~--gtD~S~GFdTAv 289 (413)
.-...|++.|+ .. ++|.++++=|-||...-..+.++.-.+ ..++||| ||=--+|.=|. .-|...--.||+
T Consensus 170 ~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~iGHe~D~ti~D~vAd~ra~TPtaa 249 (432)
T TIGR00237 170 GAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISAVGHETDFTISDFVADLRAPTPSAA 249 (432)
T ss_pred cHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEecCcCCCccHHHHhhhccCCCcHHH
Confidence 11234444443 22 379999999999988765554442222 5566655 56665665552 235556666765
Q ss_pred HHH
Q 015095 290 EEA 292 (413)
Q Consensus 290 ~~~ 292 (413)
-+.
T Consensus 250 ae~ 252 (432)
T TIGR00237 250 AEI 252 (432)
T ss_pred HHH
Confidence 543
No 121
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=55.10 E-value=30 Score=35.52 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHh---CCcEEEEEcCCcchHHHHHHHHHHHHc-------------CCCceeeeeeccc
Q 015095 221 DTNKIVDNIEDR---GINQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTI 272 (413)
Q Consensus 221 d~~~iv~~l~~~---~Id~LivIGGdgS~~~a~~L~e~~~~~-------------~~~i~vvgIPkTI 272 (413)
..+++++.+++. ++|.++-|||--+++.|+.++-....- +-.+++|.||-|=
T Consensus 66 ~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTa 133 (347)
T cd08184 66 QIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLS 133 (347)
T ss_pred HHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCC
Confidence 467888888888 999999999999999998886443211 1136799999875
No 122
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=55.04 E-value=19 Score=37.47 Aligned_cols=64 Identities=25% Similarity=0.405 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhCCc---EEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHH
Q 015095 222 TNKIVDNIEDRGIN---QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (413)
Q Consensus 222 ~~~iv~~l~~~~Id---~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~ 291 (413)
..++.+.+.+++.+ .++.+||-=....|..++-. ..+| ++.|.||-| =+..+|.+.|--|++|.
T Consensus 85 v~~i~~~l~~~~~~r~~~IIalGGG~v~D~ag~vA~~-~~rG--ip~I~IPTT---lla~vDs~~g~k~~vn~ 151 (369)
T cd08198 85 VEALHAAINRHGIDRHSYVIAIGGGAVLDAVGYAAAT-AHRG--VRLIRIPTT---VLAQNDSGVGVKNGINA 151 (369)
T ss_pred HHHHHHHHHHcCCCcCcEEEEECChHHHHHHHHHHHH-hcCC--CCEEEECCC---chhhhCCCeeeeecccC
Confidence 56889999999998 99999998888888777653 3345 679999999 22445666666666655
No 123
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=54.74 E-value=28 Score=35.95 Aligned_cols=207 Identities=13% Similarity=0.185 Sum_probs=103.1
Q ss_pred CCCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCC---eeeCChhhHhhhhhcCCceeeecCC
Q 015095 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKN---TLTLSPKVVNDIHKRGGTILRTSRG 218 (413)
Q Consensus 142 ~~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~---~~~Lt~~~V~~i~~~GGs~LGTsR~ 218 (413)
....||.|+-||| |.|++|..+++.-. .+-+.+.+.-..++|.... -+.+......+...-+---+|-.=.
T Consensus 9 ~~~~~I~VIGvGg---~G~n~v~~m~~~~~---~gve~ia~nTD~q~L~~~~a~~ki~iG~~~t~GlGaGa~P~vG~~aA 82 (338)
T COG0206 9 SLKARIKVIGVGG---AGGNAVNRMIEEGV---EGVEFIAINTDAQALKSSKADRKILIGESITRGLGAGANPEVGRAAA 82 (338)
T ss_pred ccCceEEEEEeCC---cchHHHHHHHHhhh---CceEEEEeccCHHHHhccccCeEEEeccceeeccCCCCCcHHHHHHH
Confidence 3457999999998 55667777765432 3358999999999887533 1222211111110000001111001
Q ss_pred CCcHHHHHHHHHHhCCcEEEEEcCCcc--h-HHHHHHHHHHHHcCCC-ceeeeeeccccCCCcccccccCchhHHHHHHH
Q 015095 219 GHDTNKIVDNIEDRGINQVYIIGGDGT--Q-KGAALIYKEVEKRGLQ-VAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQR 294 (413)
Q Consensus 219 ~~d~~~iv~~l~~~~Id~LivIGGdgS--~-~~a~~L~e~~~~~~~~-i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ 294 (413)
.++.++|.+.|+. .|.+|++=|.|- - -+|-.+++.++++|.. +.|+..|-+---- .-.+.+.+
T Consensus 83 ee~~~~I~~~l~g--~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt~Pf~~EG~-----------~r~~~A~~ 149 (338)
T COG0206 83 EESIEEIEEALKG--ADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVTLPFSFEGS-----------PRMENAEE 149 (338)
T ss_pred HHHHHHHHHHhcc--CCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEEecchhcCc-----------hHHHHHHH
Confidence 2456777777665 567777755543 2 2356678888877643 5566555322110 23344555
Q ss_pred HHHHHHHhhhccC--CcEEEEEcCCCCcchHHHHHh-------hhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCc
Q 015095 295 AINAAHVEVESVE--NGVGIVKLMGRYSGFISMYAT-------LASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGH 365 (413)
Q Consensus 295 ~i~~i~~~A~s~~--~rv~iVEvMGR~sG~LA~~aa-------LA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~~ 365 (413)
-|..+...+-+.- ...-++|......-|-|...+ +.. -.|++-.| --.. -.++.++..|+..|.
T Consensus 150 gi~~L~~~~DtlIvi~Ndkll~~~~~~~~~~Af~~ad~vl~~~v~~-i~e~I~~~-glin-----vDfaDv~~vm~~~G~ 222 (338)
T COG0206 150 GIEELREVVDTLIVIPNDKLLKGKDKTPIAEAFNEADDVLGNAVKG-ITELITKP-GLVN-----VDFADVRTVMKGGGF 222 (338)
T ss_pred HHHHHHHhCCcEEEEecHHHHhccCcccHHHHHHHHHHHHHHHHHH-HHHHhccC-ceEe-----ecHHHHHHHHhcCCc
Confidence 5555555443320 011234555533333333222 111 23344444 1111 234556666666677
Q ss_pred EEEEEeCCC
Q 015095 366 MVIVVAEGA 374 (413)
Q Consensus 366 ~vIvvaEGa 374 (413)
+.+=+.+..
T Consensus 223 A~mG~g~~~ 231 (338)
T COG0206 223 ALMGIGRAS 231 (338)
T ss_pred eeEEEeecc
Confidence 666665554
No 124
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=53.91 E-value=29 Score=35.54 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=41.7
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc-----------------CCCceeeeeecccc
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-----------------GLQVAVAGIPKTID 273 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~-----------------~~~i~vvgIPkTID 273 (413)
+..+++++.+++.+.|.++-|||--.++.|..++-..... +-.+++|.||-|--
T Consensus 68 ~~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtag 138 (370)
T cd08192 68 AAVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAG 138 (370)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCCc
Confidence 3578889999999999999999999999988776543210 11378999998864
No 125
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=53.44 E-value=25 Score=32.59 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=33.4
Q ss_pred HHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHH
Q 015095 227 DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (413)
Q Consensus 227 ~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~ 291 (413)
+.+.+++.|+||+-||.|+...+..-.+.+++...++||.|| |+|++-.+..
T Consensus 37 ~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGI-------------C~G~Qll~~~ 88 (188)
T TIGR00566 37 QEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGV-------------CLGHQAMGQA 88 (188)
T ss_pred HHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEE-------------CHHHHHHHHH
Confidence 445677899999999999865422211222222235778888 9998765544
No 126
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=53.10 E-value=27 Score=35.94 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=40.5
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHH----------Hc-------CCCceeeeeecc
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVE----------KR-------GLQVAVAGIPKT 271 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~----------~~-------~~~i~vvgIPkT 271 (413)
+..+++++.+++.+.|.++-|||--.++.|..++-... .. +-.+++|.||-|
T Consensus 62 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 130 (374)
T cd08183 62 ELVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTT 130 (374)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCC
Confidence 35778889999999999999999999999887764321 00 124789999988
No 127
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=52.94 E-value=2.3e+02 Score=27.66 Aligned_cols=69 Identities=4% Similarity=0.081 Sum_probs=43.4
Q ss_pred eeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcHHH
Q 015095 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (413)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~~ 224 (413)
..||++...-..+=...+++++-..+.+ ++ .+++-.. +........+
T Consensus 60 ~~i~vi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~~ 106 (341)
T PRK10703 60 KSIGLLATSSEAPYFAEIIEAVEKNCYQ-KG-YTLILCN-------------------------------AWNNLEKQRA 106 (341)
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCCHHHHHH
Confidence 4789888776677777888888776653 22 2221110 0111122346
Q ss_pred HHHHHHHhCCcEEEEEcCCcch
Q 015095 225 IVDNIEDRGINQVYIIGGDGTQ 246 (413)
Q Consensus 225 iv~~l~~~~Id~LivIGGdgS~ 246 (413)
.++.+...++|++++.+++...
T Consensus 107 ~i~~l~~~~vdgiii~~~~~~~ 128 (341)
T PRK10703 107 YLSMLAQKRVDGLLVMCSEYPE 128 (341)
T ss_pred HHHHHHHcCCCEEEEecCCCCH
Confidence 6778889999999999876443
No 128
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=52.68 E-value=27 Score=36.03 Aligned_cols=55 Identities=9% Similarity=0.126 Sum_probs=41.8
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH-------------cCCCceeeeeeccccC
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTIDN 274 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~-------------~~~~i~vvgIPkTIDN 274 (413)
...+++++.++..+.|.++-|||--.+..|+.++-.... ....+++|.||-|--.
T Consensus 73 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagT 140 (382)
T cd08187 73 ETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAAT 140 (382)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCch
Confidence 457788999999999999999999999998877543211 0134789999988643
No 129
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=52.67 E-value=14 Score=39.68 Aligned_cols=135 Identities=19% Similarity=0.184 Sum_probs=81.9
Q ss_pred EEccCCCCchhHHHHHHHHHHHhHh------CCCcEEEEEcccchhccCCCeeeCChhhHhhhhhc--CCceeeecCCC-
Q 015095 149 IVTCGGLCPGINTVIREIVCGLSYM------YGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR--GGTILRTSRGG- 219 (413)
Q Consensus 149 IvtsGG~apGmNavIr~iv~~l~~~------~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~--GGs~LGTsR~~- 219 (413)
++-..+..+ ..++..++...... .+...|+-..++.... .+...-++.+.|..++.. .-..+--.-+.
T Consensus 140 ~IDt~~~s~--~e~~~~iv~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~ii~d~~v~~ly~~~l~~~~~~~~~ge~ 216 (488)
T PRK13951 140 GIDTSKLNE--WETTALVVLEALDEKEISTIEKPHLVKIILGGFKRV-RNEELVFTTERVEKIYGRYLPENRLLFPDGEE 216 (488)
T ss_pred EEECCCCCH--HHHHHHHHHHhhhcceeeecCCceeEEEeccccccC-CCeEEEEECCcHHHHHHHhhcccEEEecCCCC
Confidence 444444444 45555555432211 1123445444444444 345566677777654322 11111111111
Q ss_pred ----CcHHHHHHHHHHhCC---cEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHH
Q 015095 220 ----HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEA 292 (413)
Q Consensus 220 ----~d~~~iv~~l~~~~I---d~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~ 292 (413)
..++++++.+.++++ +.++.+||--....|.-++... .|| |+.|.||-|+- ..+|-|+|-=||+|..
T Consensus 217 ~k~l~~v~~~~~~l~~~~~~R~d~viaiGGG~v~D~agf~A~~y-~RG--i~~i~vPTTll---a~vDssiggK~~vn~~ 290 (488)
T PRK13951 217 VKTLEHVSRAYYELVRMDFPRGKTIAGVGGGALTDFTGFVASTF-KRG--VGLSFYPTTLL---AQVDASVGGKNAIDFA 290 (488)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHH-hcC--CCeEecCccHH---HHHhcCCCCCeeeeCC
Confidence 247889999999999 9999999988888777665443 357 56999999984 5678899988888863
No 130
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=52.32 E-value=27 Score=37.93 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=46.4
Q ss_pred CcEEEEEcCCcchH--HHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHHHHhhhccC----
Q 015095 234 INQVYIIGGDGTQK--GAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVE---- 307 (413)
Q Consensus 234 Id~LivIGGdgS~~--~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i~~~A~s~~---- 307 (413)
+|+++|-||+|.-- +-....+++++++ +|..|| |+|++.|+=+.++-+-.+ ..|.|+.
T Consensus 344 ~dgIlVPGGFG~RG~eGkI~Ai~yAREn~--iP~lGI-------------ClGmQ~aviE~ARnv~Gl-~~AnS~Efdp~ 407 (533)
T COG0504 344 VDGILVPGGFGYRGVEGKIAAIRYARENN--IPFLGI-------------CLGMQLAVIEFARNVLGL-EGANSTEFDPD 407 (533)
T ss_pred CCEEEeCCCCCcCchHHHHHHHHHHHhcC--CCEEEE-------------chhHHHHHHHHHHHhcCC-ccCcccccCCC
Confidence 99999999999633 3333445555544 567777 999999988777644333 2444442
Q ss_pred CcEEEEEcCCCCcc
Q 015095 308 NGVGIVKLMGRYSG 321 (413)
Q Consensus 308 ~rv~iVEvMGR~sG 321 (413)
...-||.+|....+
T Consensus 408 t~~pVv~l~~eq~~ 421 (533)
T COG0504 408 TKYPVVDLMPEQKD 421 (533)
T ss_pred CCCceEEecccccc
Confidence 12447777766544
No 131
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=52.25 E-value=1.2e+02 Score=28.48 Aligned_cols=42 Identities=7% Similarity=0.002 Sum_probs=25.5
Q ss_pred cHHHHHH-HHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 221 DTNKIVD-NIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 221 d~~~iv~-~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
+..+.+. .+..+++|++++.+.+-... ..+.+++.+.+ +|.+
T Consensus 42 ~~~~~~~~~l~~~~vdgvi~~~~~~~~~----~~~~l~~~~iP--vv~~ 84 (269)
T cd06297 42 RLKRYLESTTLAYLTDGLLLASYDLTER----LAERRLPTERP--VVLV 84 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCccChH----HHHHHhhcCCC--EEEE
Confidence 3345554 58889999999998764432 23444445644 5544
No 132
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=51.40 E-value=1.8e+02 Score=25.88 Aligned_cols=138 Identities=12% Similarity=0.070 Sum_probs=68.8
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCC---CcccccccCchhHHHHHHHHH
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND---IAVIDKSFGFDTAVEEAQRAI 296 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDND---I~gtD~S~GFdTAv~~~~~~i 296 (413)
.+..++++.+...++++++..+.+..... +.+.+.+.+ +++|.+=.+.+.. -...-..+.+..+.+.+++.+
T Consensus 45 ~~~~~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~~~~~~--ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 119 (269)
T cd01391 45 ERALEALRDLIQQGVDGIIGPPSSSSALA---VVELAAAAG--IPVVSLDATAPDLTGYPYVFRVGPDNEQAGEAAAEYL 119 (269)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCHHHHH---HHHHHHHcC--CcEEEecCCCCccCCCceEEEEcCCcHHHHHHHHHHH
Confidence 34667777788889999988877655432 344444445 5667664443321 111223444455555555544
Q ss_pred HHHHHhhhccCCcEEEEEcCCCCcchHHH----HHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhC--CcEEEEE
Q 015095 297 NAAHVEVESVENGVGIVKLMGRYSGFISM----YATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN--GHMVIVV 370 (413)
Q Consensus 297 ~~i~~~A~s~~~rv~iVEvMGR~sG~LA~----~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~--~~~vIvv 370 (413)
.... .+++.++=.-.. ...... ..+++..+.....+.+.+.+.+ ...+.+.+.++++ -.++++.
T Consensus 120 ~~~~------~~~i~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~i~~~ 189 (269)
T cd01391 120 AEKG------WKRVALIYGDDG-AYGRERLEGFKAALKKAGIEVVAIEYGDLDTE---KGFQALLQLLKAAPKPDAIFAC 189 (269)
T ss_pred HHhC------CceEEEEecCCc-chhhHHHHHHHHHHHhcCcEEEeccccCCCcc---ccHHHHHHHHhcCCCCCEEEEc
Confidence 3332 356777643332 222222 2233332333333333333321 3456666666655 3456665
Q ss_pred eC
Q 015095 371 AE 372 (413)
Q Consensus 371 aE 372 (413)
+.
T Consensus 190 ~~ 191 (269)
T cd01391 190 ND 191 (269)
T ss_pred Cc
Confidence 54
No 133
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=51.26 E-value=54 Score=28.30 Aligned_cols=71 Identities=15% Similarity=0.226 Sum_probs=45.9
Q ss_pred CChhhHhhhhhcCCceeeecC---C-CC-cHHHHHHHHHHhCCcEEEEEcC-CcchHHHHHHHHHHHHcCCCceeeeeec
Q 015095 197 LSPKVVNDIHKRGGTILRTSR---G-GH-DTNKIVDNIEDRGINQVYIIGG-DGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (413)
Q Consensus 197 Lt~~~V~~i~~~GGs~LGTsR---~-~~-d~~~iv~~l~~~~Id~LivIGG-dgS~~~a~~L~e~~~~~~~~i~vvgIPk 270 (413)
+...++..|...|--+|-|.- . .+ .+.+.++.|.+.++-+|.+--| +-. .--..+.+++.+++ +|++.+|.
T Consensus 31 ~e~~d~~~~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~-~iP~~~i~~A~~~~--lPli~ip~ 107 (123)
T PF07905_consen 31 MEAPDPSDWLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLD-EIPEEIIELADELG--LPLIEIPW 107 (123)
T ss_pred eecCCHHHhCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccc-cCCHHHHHHHHHcC--CCEEEeCC
Confidence 333467778554444454432 2 22 3788999999999999999555 333 33455666776666 56899996
No 134
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=51.19 E-value=2.3e+02 Score=27.24 Aligned_cols=86 Identities=12% Similarity=0.174 Sum_probs=48.3
Q ss_pred eEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCC-CCcHHH
Q 015095 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDTNK 224 (413)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~-~~d~~~ 224 (413)
+||++...-.-|-...+++++-+.+.+ ++ .++.- ++.+.. .....+
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~-~g-~~v~~-------------------------------~~~~~~d~~~~~~ 47 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKE-LG-VDAIY-------------------------------VGPTTADAAGQVQ 47 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHH-hC-CeEEE-------------------------------ECCCCCCHHHHHH
Confidence 467777554567778888888777653 22 12211 111111 123456
Q ss_pred HHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 225 iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
.++.+...++|++++.+.+.+ ....+.+.+++.+ ++||.+
T Consensus 48 ~i~~~~~~~~DgiIi~~~~~~--~~~~~~~~~~~~~--iPvV~v 87 (298)
T cd06302 48 IIEDLIAQGVDAIAVVPNDPD--ALEPVLKKAREAG--IKVVTH 87 (298)
T ss_pred HHHHHHhcCCCEEEEecCCHH--HHHHHHHHHHHCC--CeEEEE
Confidence 677777889999999875532 2223334445555 445554
No 135
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=50.75 E-value=32 Score=36.05 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH-------------cCCCceeeeeeccc
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTI 272 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~-------------~~~~i~vvgIPkTI 272 (413)
..++.++.+++.+.|.+|-+||--++..|+.++-.... ..-+.++|.||-|=
T Consensus 74 ~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTa 138 (377)
T COG1454 74 TVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTA 138 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCCC
Confidence 46788999999999999999999999998877544331 11226889999886
No 136
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=50.10 E-value=15 Score=31.73 Aligned_cols=42 Identities=36% Similarity=0.494 Sum_probs=30.4
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCC---ceeeeeeccccCCCc
Q 015095 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQ---VAVAGIPKTIDNDIA 277 (413)
Q Consensus 233 ~Id~LivIGGdgS~~~a~~L~e~~~~~~~~---i~vvgIPkTIDNDI~ 277 (413)
..+.++++|||||...+.. .+.+.... +++..||.==-||+.
T Consensus 49 ~~d~vvv~GGDGTi~~vvn---~l~~~~~~~~~~plgiiP~GTgNdfa 93 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLN---ALDKRELPLPEPPVAVLPLGTGNDLA 93 (124)
T ss_pred cCCEEEEEccccHHHHHHH---HHHhcccccCCCcEEEeCCCChhHHH
Confidence 4679999999999877643 22223322 678999987788885
No 137
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=50.06 E-value=33 Score=35.42 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc-------------CCCceeeeeecc
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKT 271 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~-------------~~~i~vvgIPkT 271 (413)
+..+.++.+++.+.|.++-|||--.+..|..++-....- +-.+++|.||-|
T Consensus 67 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 67 ELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 456777888899999999999999999998887543210 115789999998
No 138
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=49.99 E-value=28 Score=35.24 Aligned_cols=49 Identities=10% Similarity=0.149 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCC
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDND 275 (413)
..+++++.+++ +.|.++-|||--.+..|..++ +. ++ +++|.||-|..+|
T Consensus 69 ~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA-~~--~g--ip~I~VPTT~~~~ 117 (332)
T cd08549 69 ELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVS-FK--VG--KPFISVPTAPSMD 117 (332)
T ss_pred HHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHH-HH--cC--CCEEEeCCCcccC
Confidence 46678888888 999999999999999888887 22 24 6799999998654
No 139
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=49.98 E-value=1.6e+02 Score=31.46 Aligned_cols=139 Identities=17% Similarity=0.165 Sum_probs=93.3
Q ss_pred eEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcHHHH
Q 015095 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (413)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~~i 225 (413)
++||.-+ ||-==.||+++.+..... + .-| .++-|...|+.. ||- |.=++.|+...
T Consensus 16 ~~gI~sV---Csahp~VieAAl~~a~~~-~-~pv--------------LiEAT~NQVnq~---GGY---TGmtP~dF~~~ 70 (426)
T PRK15458 16 TNGIYAV---CSAHPLVLEAAIRYALAN-D-SPL--------------LIEATSNQVDQF---GGY---TGMTPADFRGF 70 (426)
T ss_pred CceEEEe---cCCCHHHHHHHHHHHhhc-C-CcE--------------EEEecccccccc---CCc---CCCCHHHHHHH
Confidence 5677765 554447888887765431 1 111 477788888776 775 55555665444
Q ss_pred H-HHHHHhCCcE-EEEEcCCc-------------chHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHH
Q 015095 226 V-DNIEDRGINQ-VYIIGGDG-------------TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (413)
Q Consensus 226 v-~~l~~~~Id~-LivIGGdg-------------S~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~ 290 (413)
| +.-++.+++. .+++|||- +|..|..+.+..-+.|+. -|++=.|++ ..+....+.-+|.++
T Consensus 71 V~~iA~~~gf~~~~iiLGGDHLGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--cagdp~pL~d~~vA~ 146 (426)
T PRK15458 71 VCQLADSLNFPQEALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGFK--KIHLDCSMS--CADDPIPLTDEIVAE 146 (426)
T ss_pred HHHHHHHcCCChhhEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--CCCCCCCCChHHHHH
Confidence 3 4455678988 99999984 577788887777777886 578877776 555555666699999
Q ss_pred HHHHHHHHHHHhhh---ccCCcEEEE
Q 015095 291 EAQRAINAAHVEVE---SVENGVGIV 313 (413)
Q Consensus 291 ~~~~~i~~i~~~A~---s~~~rv~iV 313 (413)
.+++.|..+-.++. ....-+++|
T Consensus 147 Raa~L~~~aE~~a~~~~~~~~~vYvI 172 (426)
T PRK15458 147 RAARLAKIAEETCREHFGESDLVYVI 172 (426)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 99988886655542 333447777
No 140
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=49.85 E-value=75 Score=31.26 Aligned_cols=124 Identities=23% Similarity=0.287 Sum_probs=73.1
Q ss_pred eeCChhhHhhhhhcCCceeeecCC-CCcHHHHHHHHHHhCCcEEEEE----cCCcchHHHHHHHHHHHHcCCCceeeeee
Q 015095 195 LTLSPKVVNDIHKRGGTILRTSRG-GHDTNKIVDNIEDRGINQVYII----GGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (413)
Q Consensus 195 ~~Lt~~~V~~i~~~GGs~LGTsR~-~~d~~~iv~~l~~~~Id~LivI----GGdgS~~~a~~L~e~~~~~~~~i~vvgIP 269 (413)
++++++.+-......+.+-.||-- ..++.++.+.+.+.+-+.+++| |=.||+..|...++.. .+.+|.|+
T Consensus 40 ~~i~~~efy~~l~~~~~~p~TS~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LSgty~~a~~aa~~~--~~~~i~Vi--- 114 (280)
T PF02645_consen 40 VDISPEEFYEKLRESGEIPKTSQPSPGEFEEAFEKLLEEGYDEIIVITISSGLSGTYNSARLAAKML--PDIKIHVI--- 114 (280)
T ss_dssp TTSCHHHHHHHHHHTTSEEEEE---HHHHHHHHHHHHHTTTSEEEEEES-TTT-THHHHHHHHHHHH--TTTEEEEE---
T ss_pred CCCCHHHHHHHHHhcCCCceecCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchhhHHHHHHHHHhhc--CcCEEEEE---
Confidence 478999988888777877777764 4578888888888999988877 5678899888888776 23343332
Q ss_pred ccccCCCcccccccCchhHHHHHHHHHHH------HHHhhhc---cCCcEEEEEc------CCCCcchHHHHHhhh
Q 015095 270 KTIDNDIAVIDKSFGFDTAVEEAQRAINA------AHVEVES---VENGVGIVKL------MGRYSGFISMYATLA 330 (413)
Q Consensus 270 kTIDNDI~gtD~S~GFdTAv~~~~~~i~~------i~~~A~s---~~~rv~iVEv------MGR~sG~LA~~aaLA 330 (413)
|.- ..|.|..=-+..+++.+++ +...... .-+-+|+++. =||=++--|+.+.+-
T Consensus 115 ---DS~----~~s~g~g~lv~~a~~l~~~G~s~~ei~~~l~~~~~~~~~~f~~~~L~~L~kgGRis~~~a~ig~lL 183 (280)
T PF02645_consen 115 ---DSK----SVSAGQGLLVLEAAKLIEQGKSFEEIVEKLEELRERTRTYFVVDDLKYLRKGGRISKAAAFIGNLL 183 (280)
T ss_dssp ---E-S----S-HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTEEEEEEES-SHHHHHCTSSGHHHHHHHHCT
T ss_pred ---eCC----CcchhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhceEEEEechHHHHHHCCCcCchhhhhhhhh
Confidence 111 1244444444444444332 2222111 1134777887 466666555555544
No 141
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=49.61 E-value=2.1e+02 Score=26.34 Aligned_cols=77 Identities=14% Similarity=0.206 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccc-cccCch--hHHHHHHHHHHH
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFD--TAVEEAQRAINA 298 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD-~S~GFd--TAv~~~~~~i~~ 298 (413)
..++++.+...++|++++.+.+.+.. +.+++++.+ +++|.+ |++.+... .++++| .+.+.+++.+..
T Consensus 44 ~~~~i~~l~~~~vdgiii~~~~~~~~----~~~~l~~~~--ipvV~~----~~~~~~~~~~~v~~d~~~~~~~~~~~l~~ 113 (268)
T cd06298 44 ELKVLNNLLAKQVDGIIFMGGKISEE----HREEFKRSP--TPVVLA----GSVDEDNELPSVNIDYKKAAFEATELLIK 113 (268)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCCcHH----HHHHHhcCC--CCEEEE----ccccCCCCCCEEEECcHHHHHHHHHHHHH
Confidence 45677778889999999998654432 233344444 556655 33222221 234443 455555544422
Q ss_pred HHHhhhccCCcEEEEE
Q 015095 299 AHVEVESVENGVGIVK 314 (413)
Q Consensus 299 i~~~A~s~~~rv~iVE 314 (413)
.++ +++.++-
T Consensus 114 -----~g~-~~i~~l~ 123 (268)
T cd06298 114 -----NGH-KKIAFIS 123 (268)
T ss_pred -----cCC-ceEEEEe
Confidence 243 5677774
No 142
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=49.58 E-value=40 Score=34.75 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc-------CC------Cceeeeeeccc
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-------GL------QVAVAGIPKTI 272 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~-------~~------~i~vvgIPkTI 272 (413)
...++++.+++.+.|.++-|||--.++.|+.++-..... +. .+++|.||-|-
T Consensus 73 ~v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~ 137 (377)
T cd08188 73 EVMAGAELYLENGCDVIIAVGGGSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTA 137 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence 467788889999999999999999999997765432111 11 36899999987
No 143
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=49.32 E-value=37 Score=34.76 Aligned_cols=53 Identities=13% Similarity=0.237 Sum_probs=39.6
Q ss_pred CcHHHHHHHHHHhC--CcEEEEEcCCcchHHHHHHHHHHHHc-----------------CCCceeeeeeccc
Q 015095 220 HDTNKIVDNIEDRG--INQVYIIGGDGTQKGAALIYKEVEKR-----------------GLQVAVAGIPKTI 272 (413)
Q Consensus 220 ~d~~~iv~~l~~~~--Id~LivIGGdgS~~~a~~L~e~~~~~-----------------~~~i~vvgIPkTI 272 (413)
...+++++.+++.+ .|.++-|||--.+..|..++-..... .-.+++|.||-|-
T Consensus 65 ~~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTa 136 (355)
T TIGR03405 65 AQLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTA 136 (355)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCC
Confidence 34678888888887 99999999999999987765431110 1247899999885
No 144
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=49.02 E-value=26 Score=36.49 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=47.5
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccc
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD 280 (413)
.+.+++...+.+.+.|.++=|||--+++.|+.++.. +.+++|.||-+=++|=+.+.
T Consensus 71 ~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~-----~~~pfIsvPT~AS~Da~~Sp 126 (360)
T COG0371 71 EEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYR-----LGLPFISVPTIASTDAITSP 126 (360)
T ss_pred HHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHH-----cCCCEEEecCccccccccCC
Confidence 567888888888899999999999999999988754 45789999999999976544
No 145
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=48.97 E-value=44 Score=31.07 Aligned_cols=9 Identities=33% Similarity=0.744 Sum_probs=6.6
Q ss_pred Cceeeeeec
Q 015095 262 QVAVAGIPK 270 (413)
Q Consensus 262 ~i~vvgIPk 270 (413)
.+||+|||-
T Consensus 80 ~lPViGVPv 88 (162)
T COG0041 80 PLPVIGVPV 88 (162)
T ss_pred CCCeEeccC
Confidence 567888884
No 146
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=48.76 E-value=85 Score=30.79 Aligned_cols=106 Identities=13% Similarity=0.129 Sum_probs=62.7
Q ss_pred CchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCC---CCcHHHHHHHHHHh
Q 015095 156 CPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG---GHDTNKIVDNIEDR 232 (413)
Q Consensus 156 apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~---~~d~~~iv~~l~~~ 232 (413)
+|....-.+.+++++.+..+..++.-+...+. +. ..+.......+...|+.+.+..+. ..|+...+..++..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~~--~g---~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~ 189 (340)
T cd06349 115 STSQAIEAPLLADYAVKDLGFKKVAILSVNTD--WG---RTSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDA 189 (340)
T ss_pred cCCcHHHHHHHHHHHHHHcCCcEEEEEecCCh--Hh---HHHHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHhc
Confidence 33344444556665543344456655543332 10 111112223344567777776553 45788999999999
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeee
Q 015095 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (413)
Q Consensus 233 ~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIP 269 (413)
+-|++++.|..+ .+..+.+.+++.|++.++++.-
T Consensus 190 ~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~ 223 (340)
T cd06349 190 NPDAIILISYYN---DGAPIARQARAVGLDIPVVASS 223 (340)
T ss_pred CCCEEEEccccc---hHHHHHHHHHHcCCCCcEEccC
Confidence 999988877433 3445677777788888877653
No 147
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=48.66 E-value=1e+02 Score=27.50 Aligned_cols=102 Identities=15% Similarity=0.206 Sum_probs=52.6
Q ss_pred eeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhH-hhhhhcCCceeeecC-C---C
Q 015095 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVV-NDIHKRGGTILRTSR-G---G 219 (413)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V-~~i~~~GGs~LGTsR-~---~ 219 (413)
.++.+.+.||+.=.+..-+-+.. + +..+ .+|+- .| ..+..+.+ +......-.+++-|- . .
T Consensus 4 ~~vl~~~~~gD~H~lG~~iv~~~--l-r~~G-~eVi~-----LG------~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~ 68 (137)
T PRK02261 4 KTVVLGVIGADCHAVGNKILDRA--L-TEAG-FEVIN-----LG------VMTSQEEFIDAAIETDADAILVSSLYGHGE 68 (137)
T ss_pred CEEEEEeCCCChhHHHHHHHHHH--H-HHCC-CEEEE-----CC------CCCCHHHHHHHHHHcCCCEEEEcCccccCH
Confidence 46777777887655544333332 1 2223 33321 11 12333333 333344444555442 2 2
Q ss_pred CcHHHHHHHHHHhCC-cEEEEEcCCcchHH--HHHHHHHHHHcCC
Q 015095 220 HDTNKIVDNIEDRGI-NQVYIIGGDGTQKG--AALIYKEVEKRGL 261 (413)
Q Consensus 220 ~d~~~iv~~l~~~~I-d~LivIGGdgS~~~--a~~L~e~~~~~~~ 261 (413)
....++++.|++.+. +..+++||.-+... .....+.+++.|+
T Consensus 69 ~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~ 113 (137)
T PRK02261 69 IDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGF 113 (137)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCC
Confidence 457788888888877 66788888754321 3334455555553
No 148
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=48.34 E-value=41 Score=33.85 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=43.5
Q ss_pred CcHHHHHHHHHHh-CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCccc
Q 015095 220 HDTNKIVDNIEDR-GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI 279 (413)
Q Consensus 220 ~d~~~iv~~l~~~-~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gt 279 (413)
...+++.+.+++. +.|.++-|||--.++.|..++.. ++ +++|.||-|..+|-..+
T Consensus 61 ~~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~~---~~--~p~i~vPTt~~tgs~~s 116 (331)
T cd08174 61 SDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAFL---RG--IPLSVPTTNLNDDGIAS 116 (331)
T ss_pred cCHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhh---cC--CCEEEecCccccCcccc
Confidence 5677787878777 59999999999999998888762 34 67999999988865443
No 149
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=48.05 E-value=1.5e+02 Score=27.28 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
+..+.++.+...++|++++...+.+-. ..+.+.+.+ +++|.+
T Consensus 42 ~~~~~i~~~~~~~vdgiii~~~~~~~~----~~~~~~~~~--ipvV~~ 83 (266)
T cd06278 42 DLDAALRQLLQYRVDGVIVTSGTLSSE----LAEECRRNG--IPVVLI 83 (266)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCHH----HHHHHhhcC--CCEEEE
Confidence 445677888889999999988764432 233344445 556666
No 150
>PRK05670 anthranilate synthase component II; Provisional
Probab=47.91 E-value=32 Score=31.73 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=32.1
Q ss_pred HHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHH
Q 015095 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (413)
Q Consensus 229 l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~ 291 (413)
++.++.|+|++-||.|+...+....+.+++..-++||.|| |+|++--...
T Consensus 39 ~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGI-------------ClG~Qlla~a 88 (189)
T PRK05670 39 IEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGV-------------CLGHQAIGEA 88 (189)
T ss_pred HHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEE-------------CHHHHHHHHH
Confidence 3556799999999999876544333333322234677777 9998754443
No 151
>CHL00101 trpG anthranilate synthase component 2
Probab=47.46 E-value=35 Score=31.61 Aligned_cols=49 Identities=14% Similarity=0.324 Sum_probs=30.9
Q ss_pred HHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHH
Q 015095 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (413)
Q Consensus 229 l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~ 290 (413)
+.+.++|+|++.||.|+........+-++....++|+.|| |+|++--+.
T Consensus 39 ~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGI-------------ClG~Qlla~ 87 (190)
T CHL00101 39 IKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGV-------------CLGHQSIGY 87 (190)
T ss_pred HhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEE-------------chhHHHHHH
Confidence 4567899999999999875432111111112334667777 999875544
No 152
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=46.85 E-value=1.5e+02 Score=23.78 Aligned_cols=77 Identities=19% Similarity=0.199 Sum_probs=48.4
Q ss_pred EEEccCCCCc-hhHHHHHHHHHHHhHhCCCcEE-EEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcHHHH
Q 015095 148 CIVTCGGLCP-GINTVIREIVCGLSYMYGVDEI-LGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (413)
Q Consensus 148 aIvtsGG~ap-GmNavIr~iv~~l~~~~~~~~V-~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~~i 225 (413)
.++.-|.+-| ..|..++.+.+.+.+..+...+ +|+.+. ..++++++
T Consensus 3 llv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~--------------------------------~~P~i~~~ 50 (101)
T cd03409 3 LVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSG--------------------------------LGPDTEEA 50 (101)
T ss_pred EEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECC--------------------------------CCCCHHHH
Confidence 3455678887 8999999999888654432222 122221 34678889
Q ss_pred HHHHHHhCCcEEEEE-----cCCcch-HHHHHHHHHH
Q 015095 226 VDNIEDRGINQVYII-----GGDGTQ-KGAALIYKEV 256 (413)
Q Consensus 226 v~~l~~~~Id~LivI-----GGdgS~-~~a~~L~e~~ 256 (413)
++.|++.+++.++++ -|..+. .....+.+..
T Consensus 51 l~~l~~~g~~~vvvvPl~~~~g~h~~~di~~~~~~~~ 87 (101)
T cd03409 51 IRELAEEGYQRVVIVPLAPVSGDEVFYDIDSEIGLVR 87 (101)
T ss_pred HHHHHHcCCCeEEEEeCccccChhhHHHHHHHHHHHH
Confidence 999999898887664 455555 3334444443
No 153
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=46.55 E-value=40 Score=35.29 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=40.1
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHH-------H-------cC-----CCceeeeeecc
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVE-------K-------RG-----LQVAVAGIPKT 271 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~-------~-------~~-----~~i~vvgIPkT 271 (413)
+...++++.+++.++|.++-|||--.+..|+.++-... + ++ -.+++|.||-|
T Consensus 67 ~~v~~~~~~~~~~~~D~IIaiGGGSviD~AKaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 137 (414)
T cd08190 67 ESFKDAIAFAKKGQFDAFVAVGGGSVIDTAKAANLYASHPDADFLDYVNAPIGKGKPPPGPLKPLIAIPTT 137 (414)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHHhhccccccccCCCCCCEEEeCCC
Confidence 35788999999999999999999999999887752211 0 11 12689999999
No 154
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=46.48 E-value=2.9e+02 Score=27.49 Aligned_cols=93 Identities=17% Similarity=0.254 Sum_probs=57.7
Q ss_pred CCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCC-CCc
Q 015095 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHD 221 (413)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~-~~d 221 (413)
+..+||++..+-..|--+.+++++.+.+.+ ++ ..+. +.++.. ...
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~-~g-~~l~--------------------------------i~~~~~~~~~ 69 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAES-LG-AKVF--------------------------------VQSANGNEET 69 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EECCCCCHHH
Confidence 466999999888888889999999887753 22 2221 111111 123
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeecccc
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTID 273 (413)
..+.++.+...++|++++.+.+.... ....+.+.+.+ ++||.+-..++
T Consensus 70 ~~~~i~~l~~~~vDGiIi~~~~~~~~--~~~l~~~~~~~--iPvV~id~~~~ 117 (330)
T PRK10355 70 QMSQIENMINRGVDVLVIIPYNGQVL--SNVIKEAKQEG--IKVLAYDRMIN 117 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhhH--HHHHHHHHHCC--CeEEEECCCCC
Confidence 45678888899999999997653311 12223344445 56777644443
No 155
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=45.78 E-value=92 Score=27.32 Aligned_cols=85 Identities=24% Similarity=0.434 Sum_probs=52.0
Q ss_pred EEEEEcccchhccCC----------CeeeCChhhHhhhhhcCCceeeecCC-CCcHHHHHHHHHHhCCcEEEEEcCCcc-
Q 015095 178 EILGIEGGYRGFYSK----------NTLTLSPKVVNDIHKRGGTILRTSRG-GHDTNKIVDNIEDRGINQVYIIGGDGT- 245 (413)
Q Consensus 178 ~V~Gi~~G~~GL~~~----------~~~~Lt~~~V~~i~~~GGs~LGTsR~-~~d~~~iv~~l~~~~Id~LivIGGdgS- 245 (413)
-++++-.|..=+++. ++=-++++..+.+...|-.++-..-- ..|++++++.+.+++.+-++++|+.|.
T Consensus 18 ~~i~aDgGa~~l~~~~g~~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~kD~TD~e~Al~~~~~~~~~~i~v~Ga~GgR 97 (123)
T PF04263_consen 18 FIIAADGGANRLYELFGIKPDLIIGDFDSISPEVLEFYKSKGVEIIHFPEKDYTDLEKALEYAIEQGPDEIIVLGALGGR 97 (123)
T ss_dssp EEEEETTHHHHHHHTTTT--SEEEC-SSSS-HHHHHHHHHCTTEEEEE-STTS-HHHHHHHHHHHTTTSEEEEES-SSSS
T ss_pred EEEEEchHHHHHHHhcCCCCCEEEecCCCCChHHHHHHHhhccceecccccccCHHHHHHHHHHHCCCCEEEEEecCCCc
Confidence 456666666555433 44456666666666775556655411 247999999999999999999999995
Q ss_pred ----hHHHHHHHHHHHHcCCCc
Q 015095 246 ----QKGAALIYKEVEKRGLQV 263 (413)
Q Consensus 246 ----~~~a~~L~e~~~~~~~~i 263 (413)
+.....|.++. +.+.++
T Consensus 98 ~DH~lanl~~l~~~~-~~~~~i 118 (123)
T PF04263_consen 98 FDHTLANLNLLYKYK-KRGIKI 118 (123)
T ss_dssp HHHHHHHHHHHHHHH-TTTSEE
T ss_pred HHHHHHHHHHHHHHH-HcCCeE
Confidence 44444444443 345443
No 156
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=45.35 E-value=36 Score=25.71 Aligned_cols=50 Identities=8% Similarity=0.251 Sum_probs=36.3
Q ss_pred eeecCCCCcHHHHHHHHHHhCCcE------------EEEEcCCcchHHHHHHHHHHH-HcCCC
Q 015095 213 LRTSRGGHDTNKIVDNIEDRGINQ------------VYIIGGDGTQKGAALIYKEVE-KRGLQ 262 (413)
Q Consensus 213 LGTsR~~~d~~~iv~~l~~~~Id~------------LivIGGdgS~~~a~~L~e~~~-~~~~~ 262 (413)
+|+-+...+.++.++.|++.+++. -+.+|.+.+...|..+.+.++ ..+.+
T Consensus 9 v~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~~~~~~~ 71 (76)
T PF05036_consen 9 VGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLKKAAGPD 71 (76)
T ss_dssp EEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHHHHHTS-
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHhHhhCCC
Confidence 566666677888899999998884 678899999999988888887 45554
No 157
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=45.18 E-value=31 Score=35.02 Aligned_cols=47 Identities=6% Similarity=0.233 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeecccc
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTID 273 (413)
..+++++.+++ +.|.++-|||--.++.|..++.. + .+++|.||-|-.
T Consensus 69 ~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~---~--~~p~i~IPTTag 115 (348)
T cd08175 69 AVGRVLKELER-DTDLIIAVGSGTINDITKYVSYK---T--GIPYISVPTAPS 115 (348)
T ss_pred HHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHh---c--CCCEEEecCccc
Confidence 35677777777 99999999999999999888732 2 467999999843
No 158
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=45.03 E-value=2.1e+02 Score=25.36 Aligned_cols=45 Identities=9% Similarity=0.138 Sum_probs=25.3
Q ss_pred hHhhhhhcCCceeeecCCC----CcHHHHHHHHHHhCC-cEEEEEcCCcc
Q 015095 201 VVNDIHKRGGTILRTSRGG----HDTNKIVDNIEDRGI-NQVYIIGGDGT 245 (413)
Q Consensus 201 ~V~~i~~~GGs~LGTsR~~----~d~~~iv~~l~~~~I-d~LivIGGdgS 245 (413)
.++.....+..++|-|-.. +.++++++.|++.+. +..+++||.=.
T Consensus 45 ~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~ 94 (132)
T TIGR00640 45 IARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIP 94 (132)
T ss_pred HHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 3455556666665544431 235666677777666 45566666443
No 159
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=44.99 E-value=2.2e+02 Score=30.48 Aligned_cols=139 Identities=18% Similarity=0.210 Sum_probs=91.5
Q ss_pred eEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcHHHH
Q 015095 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (413)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~~i 225 (413)
++||.-+ ||-==.||+++.+..... + .-| .++-|...|+.. ||- |.=++.|+...
T Consensus 12 ~~gI~sV---Csahp~VieAAl~~a~~~-~-~pv--------------LiEAT~NQVnq~---GGY---TGmtP~dF~~~ 66 (420)
T TIGR02810 12 PRGIYSV---CSAHPLVLEAAIRRARAS-G-TPV--------------LIEATSNQVNQF---GGY---TGMTPADFRDF 66 (420)
T ss_pred CCeEEEE---CCCCHHHHHHHHHHHhhc-C-CcE--------------EEEecccccccc---CCc---CCCCHHHHHHH
Confidence 5577765 554447888887766431 1 111 467787778776 775 55555565444
Q ss_pred -HHHHHHhCCcE-EEEEcCCc-------------chHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHH
Q 015095 226 -VDNIEDRGINQ-VYIIGGDG-------------TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (413)
Q Consensus 226 -v~~l~~~~Id~-LivIGGdg-------------S~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~ 290 (413)
.+.-++.+++. .+++|||- +|..|..+.+..-+.|+. -+++=.|++ ..+-..-+.-+|.++
T Consensus 67 V~~iA~~~gf~~~~iiLggDHlGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--ca~d~~~L~d~~vAe 142 (420)
T TIGR02810 67 VETIADRIGFPRDRLILGGDHLGPNPWQHLPADEAMAKAAALVDAYVEAGFT--KIHLDASMG--CAGDPAPLDDATVAE 142 (420)
T ss_pred HHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--ccCCCccCCHHHHHH
Confidence 44456678988 99999985 577777777777777886 578877777 222224556688899
Q ss_pred HHHHHHHHHHHhhh---ccCCcEEEE
Q 015095 291 EAQRAINAAHVEVE---SVENGVGIV 313 (413)
Q Consensus 291 ~~~~~i~~i~~~A~---s~~~rv~iV 313 (413)
.+++.|..+-..+. ....-+++|
T Consensus 143 Raa~L~~~aE~~~~~~~~~~~~vYvI 168 (420)
T TIGR02810 143 RAARLCAVAEAAATDRRGETKPVYVI 168 (420)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 99988886655544 333447777
No 160
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=44.63 E-value=89 Score=30.66 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=48.6
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcHH
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~ 223 (413)
..++.++ ||... ++..+++.+...| +.++.|.++||-.- + -....++.|...+-.+|=.+=+.+.-|
T Consensus 105 ~~~v~ll--G~~~~----v~~~a~~~l~~~y-~l~i~g~~~Gyf~~---~---e~~~i~~~I~~s~~dil~VglG~PkQE 171 (243)
T PRK03692 105 GTPVFLV--GGKPE----VLAQTEAKLRTQW-NVNIVGSQDGYFTP---E---QRQALFERIHASGAKIVTVAMGSPKQE 171 (243)
T ss_pred CCeEEEE--CCCHH----HHHHHHHHHHHHh-CCEEEEEeCCCCCH---H---HHHHHHHHHHhcCCCEEEEECCCcHHH
Confidence 3566665 55444 5555555555668 67999999998631 0 012246666666665543333323334
Q ss_pred HHHHH-HHHhCCcEEEEEcC
Q 015095 224 KIVDN-IEDRGINQVYIIGG 242 (413)
Q Consensus 224 ~iv~~-l~~~~Id~LivIGG 242 (413)
..+.. .+..+...++.+||
T Consensus 172 ~~~~~~~~~~~~~v~~gvGg 191 (243)
T PRK03692 172 IFMRDCRLVYPDALYMGVGG 191 (243)
T ss_pred HHHHHHHHhCCCCEEEEeCe
Confidence 43333 34446666777777
No 161
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=44.52 E-value=2.6e+02 Score=25.88 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
...++++.+..+++|++++.+.+..-.. + +.+.+.+ ++||.+
T Consensus 43 ~~~~~i~~l~~~~vdgiii~~~~~~~~~---~-~~~~~~~--ipvV~~ 84 (264)
T cd06274 43 TERETVETLIARQVDALIVAGSLPPDDP---Y-YLCQKAG--LPVVAL 84 (264)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCchHH---H-HHHHhcC--CCEEEe
Confidence 3457888899999999999987643221 2 2334445 456655
No 162
>PLN02335 anthranilate synthase
Probab=44.41 E-value=38 Score=32.48 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=33.6
Q ss_pred HHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHH
Q 015095 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 289 (413)
Q Consensus 229 l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv 289 (413)
+..++.+++++-||-++-.......+.+++.+-.+|+.|| |+|++--+
T Consensus 58 ~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGI-------------ClG~QlLa 105 (222)
T PLN02335 58 LKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGV-------------CMGLQCIG 105 (222)
T ss_pred HHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEEe-------------cHHHHHHH
Confidence 4567899999999999876543334444444555778887 99998433
No 163
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=44.17 E-value=1.3e+02 Score=27.59 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=25.3
Q ss_pred eeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccch
Q 015095 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYR 187 (413)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~ 187 (413)
.++.++ ||. |+ ++..+...+.+.|++.+|.|.++||-
T Consensus 49 ~~ifll--G~~-~~---~~~~~~~~l~~~yP~l~ivg~~~g~f 85 (172)
T PF03808_consen 49 KRIFLL--GGS-EE---VLEKAAANLRRRYPGLRIVGYHHGYF 85 (172)
T ss_pred CeEEEE--eCC-HH---HHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 455554 444 43 45555556667799999999999976
No 164
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=44.02 E-value=43 Score=34.98 Aligned_cols=47 Identities=28% Similarity=0.418 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCc---EEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeecc
Q 015095 222 TNKIVDNIEDRGIN---QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (413)
Q Consensus 222 ~~~iv~~l~~~~Id---~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkT 271 (413)
..++.+.+++++.+ .++-|||--++..|..++-. ..++ ++.|.||-|
T Consensus 97 v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~~-~~rg--ip~I~IPTT 146 (389)
T PRK06203 97 VEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAAT-AHRG--VRLIRIPTT 146 (389)
T ss_pred HHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHHH-hcCC--CCEEEEcCC
Confidence 78899999999998 99999999888888777642 2334 679999999
No 165
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=43.60 E-value=2.1e+02 Score=31.94 Aligned_cols=96 Identities=22% Similarity=0.255 Sum_probs=62.3
Q ss_pred HHHHHHHHH--hCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHHH
Q 015095 223 NKIVDNIED--RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAH 300 (413)
Q Consensus 223 ~~iv~~l~~--~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i~ 300 (413)
++++..++. +-||+++|-.|--++.-|..|-+++-.-|++ -|+.=|.||| .+...|.
T Consensus 111 krLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~-yv~fKPGtIe-----------------qI~svi~--- 169 (717)
T COG4981 111 KRLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFP-YVAFKPGTIE-----------------QIRSVIR--- 169 (717)
T ss_pred HHHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCce-eEEecCCcHH-----------------HHHHHHH---
Confidence 455555555 4699999999999999999999998777765 3555566553 2222222
Q ss_pred HhhhccCCcEEEEEcCCCCcc-h----------HHHHHhhhcCCccEEEcCC
Q 015095 301 VEVESVENGVGIVKLMGRYSG-F----------ISMYATLASRDVDCCLIPE 341 (413)
Q Consensus 301 ~~A~s~~~rv~iVEvMGR~sG-~----------LA~~aaLA~~~ad~ilIPE 341 (413)
-|..++.-=-|+..-|+.+| | ||+++.|-+ .+|++++--
T Consensus 170 -IAka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR~-~~NIvl~vG 219 (717)
T COG4981 170 -IAKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRS-RDNIVLCVG 219 (717)
T ss_pred -HHhcCCCCceEEEEecCccCCccchhhcccHHHHHHHHHhc-CCCEEEEec
Confidence 22233333335555555444 3 799999998 688877643
No 166
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.47 E-value=2.4e+02 Score=29.31 Aligned_cols=162 Identities=16% Similarity=0.073 Sum_probs=90.5
Q ss_pred EEEccCCCCchhH-HHHHHHHHHHhHhCCCc------EE--EEEcccchhccCCCe-eeCC--hhhHh-hhhhcCCceee
Q 015095 148 CIVTCGGLCPGIN-TVIREIVCGLSYMYGVD------EI--LGIEGGYRGFYSKNT-LTLS--PKVVN-DIHKRGGTILR 214 (413)
Q Consensus 148 aIvtsGG~apGmN-avIr~iv~~l~~~~~~~------~V--~Gi~~G~~GL~~~~~-~~Lt--~~~V~-~i~~~GGs~LG 214 (413)
+||++||==|=+| ..+..+++.+....+.+ .| .|+-.+++-|.+.+. +.|. -...+ ..+.. +.+
T Consensus 163 ~vVfmGmGEPL~N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~~~i~~L~~~dl~v~LaiSLha~d~e~r~~---l~p 239 (356)
T PRK14462 163 NIVYMGMGEPLDNLDNVSKAIKIFSENDGLAISPRRQTISTSGLASKIKKLGEMNLGVQLAISLHAVDDELRSE---LMP 239 (356)
T ss_pred CeEEeCCcccccCHHHHHHHHHHhcCccCCCcCCCceEEECCCChHHHHHHHhcCCCeEEEEECCCCCHHHHHH---hCC
Confidence 7888877777788 46666666665322221 11 455555555554432 1111 11111 11111 223
Q ss_pred ecCCCCcHHHHHHHHHHhC--------CcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCch
Q 015095 215 TSRGGHDTNKIVDNIEDRG--------INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFD 286 (413)
Q Consensus 215 TsR~~~d~~~iv~~l~~~~--------Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFd 286 (413)
.++. ..+++++++++++- |.++++=|=|++...|.+|++.++.. ++.|=.||= |++++.++-.=-+
T Consensus 240 v~~~-~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l--~~~VnLIPy---n~~~~~~~~~ps~ 313 (356)
T PRK14462 240 INKA-YNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGI--KAKVNLILF---NPHEGSKFERPSL 313 (356)
T ss_pred CCcc-CCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhc--CcEEEEEeC---CCCCCCCCCCCCH
Confidence 3322 24567777666543 67888888899999999999998754 456667774 6766655433223
Q ss_pred hHHHHHHHHHHHHHHhhhccCCcEEEEEcCCCC----cchHHH
Q 015095 287 TAVEEAQRAINAAHVEVESVENGVGIVKLMGRY----SGFISM 325 (413)
Q Consensus 287 TAv~~~~~~i~~i~~~A~s~~~rv~iVEvMGR~----sG~LA~ 325 (413)
..++...+.+ .+..-.+.|-..+|++ ||-|+.
T Consensus 314 e~i~~f~~~l-------~~~gi~vtvR~~~G~dI~aACGQL~~ 349 (356)
T PRK14462 314 EDMIKFQDYL-------NSKGLLCTIRESKGLDISAACGQLRE 349 (356)
T ss_pred HHHHHHHHHH-------HHCCCcEEEeCCCCCchhhcCccchh
Confidence 3333333222 2222347888889985 666654
No 167
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=43.15 E-value=1.6e+02 Score=25.18 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=25.7
Q ss_pred HhhhhhcCCceeeecCCC----CcHHHHHHHHHHhCC-cEEEEEcCCcc
Q 015095 202 VNDIHKRGGTILRTSRGG----HDTNKIVDNIEDRGI-NQVYIIGGDGT 245 (413)
Q Consensus 202 V~~i~~~GGs~LGTsR~~----~d~~~iv~~l~~~~I-d~LivIGGdgS 245 (413)
++.....+-.+++-|-.. +..+++++.|++.+. +..+++||...
T Consensus 43 ~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~ 91 (122)
T cd02071 43 VEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIP 91 (122)
T ss_pred HHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 444455555555554432 345667777777766 55677777654
No 168
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=43.13 E-value=3e+02 Score=26.20 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
..+.++.+...++|++++.+.+.+. ...+.+++++.+ ++||.+
T Consensus 44 ~~~~i~~~~~~~vdgiii~~~~~~~--~~~~l~~l~~~~--ipvV~~ 86 (288)
T cd01538 44 QISQIENMIAKGVDVLVIAPVDGEA--LASAVEKAADAG--IPVIAY 86 (288)
T ss_pred HHHHHHHHHHcCCCEEEEecCChhh--HHHHHHHHHHCC--CCEEEE
Confidence 4577777888999999998866532 122334455545 556654
No 169
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=42.80 E-value=35 Score=31.54 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=36.1
Q ss_pred eeecCCCCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccc
Q 015095 213 LRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (413)
Q Consensus 213 LGTsR~~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTI 272 (413)
.+--|+...+.+++++.++.+++.++.+.|-...-. --++- ....||||||-..
T Consensus 33 ~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lp-gvva~-----~t~~PVIgvP~~~ 86 (156)
T TIGR01162 33 VSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLP-GMVAA-----LTPLPVIGVPVPS 86 (156)
T ss_pred ECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhH-HHHHh-----ccCCCEEEecCCc
Confidence 334477778889999999999987777666543322 11222 3468899999743
No 170
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=42.56 E-value=34 Score=35.03 Aligned_cols=64 Identities=23% Similarity=0.412 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHhC---CcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHH
Q 015095 221 DTNKIVDNIEDRG---INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (413)
Q Consensus 221 d~~~iv~~l~~~~---Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~ 290 (413)
..+++++.+++++ .|.++.|||--.+..|..++... .++ +++|.||-|. +..+|-+.|.-++++
T Consensus 68 ~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~rg--ip~i~VPTTl---la~~ds~~g~k~~i~ 134 (344)
T cd08169 68 TVTRILERAIALGANRRTAIVAVGGGATGDVAGFVASTL-FRG--IAFIRVPTTL---LAQSDSGVGGKTGIN 134 (344)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-ccC--CcEEEecCCc---ccccccCccceEeEe
Confidence 4678888899887 89999999998888888776532 234 6799999984 234455666655555
No 171
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=42.15 E-value=75 Score=27.81 Aligned_cols=75 Identities=24% Similarity=0.341 Sum_probs=51.2
Q ss_pred ccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc--CC
Q 015095 184 GGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR--GL 261 (413)
Q Consensus 184 ~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~--~~ 261 (413)
.|..||+-.++.-++|++..++.. .+|.+++++.++++.=++++ ||--=....+..|-+.++++ +.
T Consensus 26 ~GITGFyl~eYkGmSP~~wkgf~l-----------~EDpe~ai~~I~d~s~~aV~-I~TVV~~~~~~~i~~~i~ekL~~e 93 (110)
T PF10126_consen 26 GGITGFYLHEYKGMSPQDWKGFLL-----------DEDPEMAIKAINDLSENAVL-IGTVVDEEKVEKIEKLIKEKLKNE 93 (110)
T ss_pred cCccEEEeEeecCCChHHhcCccc-----------ccCHHHHHHHHHHhccCcEE-EEEEECHHHHHHHHHHHHHHhcCC
Confidence 456777777777777776665422 28899999999999888765 44444456667776666555 55
Q ss_pred Cceeeeeec
Q 015095 262 QVAVAGIPK 270 (413)
Q Consensus 262 ~i~vvgIPk 270 (413)
+-.++.+|-
T Consensus 94 ryTii~iPi 102 (110)
T PF10126_consen 94 RYTIIEIPI 102 (110)
T ss_pred ceEEEEeeE
Confidence 556777774
No 172
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=42.00 E-value=40 Score=28.99 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=37.4
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
.+.++|++..++.++++ +.||.|.+.-...|++.+.+.|+ .++|-
T Consensus 61 l~~e~I~~ia~~~g~~~--i~pGyg~lse~~~fa~~~~~~gi--~fiGp 105 (110)
T PF00289_consen 61 LNIEAIIDIARKEGADA--IHPGYGFLSENAEFAEACEDAGI--IFIGP 105 (110)
T ss_dssp TSHHHHHHHHHHTTESE--EESTSSTTTTHHHHHHHHHHTT---EESSS
T ss_pred ccHHHHhhHhhhhcCcc--cccccchhHHHHHHHHHHHHCCC--EEECc
Confidence 57899999999997776 56999999999999999988775 46653
No 173
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=41.85 E-value=2.8e+02 Score=25.52 Aligned_cols=84 Identities=13% Similarity=0.181 Sum_probs=50.4
Q ss_pred eEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcHHHH
Q 015095 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (413)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~~i 225 (413)
.||++...-..|-.+..+.++.+.+.+ ++ ..++-+ -+.........+
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~-------------------------------~~~~~~~~~~~~ 47 (265)
T cd06299 1 TIGVIVPDIRNPYFASLATAIQDAASA-AG-YSTIIG-------------------------------NSDENPETENRY 47 (265)
T ss_pred CEEEEecCCCCccHHHHHHHHHHHHHH-cC-CEEEEE-------------------------------eCCCCHHHHHHH
Confidence 367777655677778888888776643 32 222211 011111234577
Q ss_pred HHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 226 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 226 v~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
++.+...++|++++.+.+.... ..+.+++.+ +++|.+
T Consensus 48 ~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--ipvV~~ 84 (265)
T cd06299 48 LDNLLSQRVDGIIVVPHEQSAE----QLEDLLKRG--IPVVFV 84 (265)
T ss_pred HHHHHhcCCCEEEEcCCCCChH----HHHHHHhCC--CCEEEE
Confidence 8889999999999998765532 234555555 456643
No 174
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=41.66 E-value=2.7e+02 Score=25.98 Aligned_cols=43 Identities=9% Similarity=0.206 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeec
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPk 270 (413)
.+++.+.+...++|++++.+.+.... ..+++.+.+ +|||.+-.
T Consensus 53 ~~~~~~~l~~~~~dgiii~~~~~~~~----~~~~~~~~~--ipvV~~~~ 95 (275)
T cd06295 53 RDWLARYLASGRADGVILIGQHDQDP----LPERLAETG--LPFVVWGR 95 (275)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCChH----HHHHHHhCC--CCEEEECC
Confidence 34566777788999999998765421 124444445 56776543
No 175
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.33 E-value=2.9e+02 Score=25.53 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCcEEEEEcCCc
Q 015095 223 NKIVDNIEDRGINQVYIIGGDG 244 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdg 244 (413)
.+.++.+...++|++++.+.+.
T Consensus 46 ~~~~~~l~~~~vdgiii~~~~~ 67 (275)
T cd06317 46 AAQVEDLIAQKVDGIILWPTDG 67 (275)
T ss_pred HHHHHHHHHcCCCEEEEecCCc
Confidence 4567777788999999988664
No 176
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.29 E-value=3.1e+02 Score=25.85 Aligned_cols=134 Identities=12% Similarity=0.124 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcc----cccccCch--hHHHHHHHH
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV----IDKSFGFD--TAVEEAQRA 295 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~g----tD~S~GFd--TAv~~~~~~ 295 (413)
..+.++.+..+++|++++...+.. . ...+.+.+.+.+ +|||.+ |.+++. ...+++.| .+.+.+++.
T Consensus 44 ~~~~i~~~~~~~vdgiii~~~~~~-~-~~~~i~~~~~~~--iPvV~~----~~~~~~~~~~~~~~v~~d~~~~g~~~~~~ 115 (272)
T cd06313 44 QVAAIENMASQGWDFIAVDPLGIG-T-LTEAVQKAIARG--IPVIDM----GTLIAPLQINVHSFLAPDNYFMGASVAQA 115 (272)
T ss_pred HHHHHHHHHHcCCCEEEEcCCChH-H-hHHHHHHHHHCC--CcEEEe----CCCCCCCCCceEEEECCCcHHHHHHHHHH
Confidence 456788888999999999765421 1 222334444445 456655 333321 11223333 344444443
Q ss_pred HHHHHHhhhccCCcEEEEEc-------CCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCC--cE
Q 015095 296 INAAHVEVESVENGVGIVKL-------MGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENG--HM 366 (413)
Q Consensus 296 i~~i~~~A~s~~~rv~iVEv-------MGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~--~~ 366 (413)
+-. ....+ +++.++.- .-|..||........ +..+.-+.+..++.+ .-.+.+++.++++. -+
T Consensus 116 l~~---~~~g~-~~i~~l~g~~~~~~~~~R~~gf~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~a 186 (272)
T cd06313 116 LCN---AMGGK-GKIAMLQGALGHTGAQGRAQGFNDVIKKYP--DIEVVDEQPANWDVS---KAARIWETWLTKYPQLDG 186 (272)
T ss_pred HHH---HcCCC-ceEEEEECCCCCcchhHHHHHHHHHHHhCC--CCEEEeccCCCCCHH---HHHHHHHHHHHhCCCCCE
Confidence 322 12233 46777741 236677776554311 233333333344433 34555666565543 34
Q ss_pred EEEEeC
Q 015095 367 VIVVAE 372 (413)
Q Consensus 367 vIvvaE 372 (413)
+++.+.
T Consensus 187 i~~~nd 192 (272)
T cd06313 187 AFCHND 192 (272)
T ss_pred EEECCC
Confidence 444433
No 177
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=41.05 E-value=2.7e+02 Score=29.78 Aligned_cols=139 Identities=17% Similarity=0.177 Sum_probs=90.4
Q ss_pred eEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcHHHH
Q 015095 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (413)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~~i 225 (413)
.+||--+ ||-==.||+++.+..... + .-| .++.|...|+.. ||- |.=++.|+...
T Consensus 13 ~~Gi~SV---Csahp~VieAAl~~a~~~-~-~pv--------------LiEAT~NQVdq~---GGY---TGmtP~dF~~~ 67 (421)
T PRK15052 13 HIGICSV---CSAHPLVIEAALAFDLNS-T-RKV--------------LIEATSNQVNQF---GGY---TGMTPADFREF 67 (421)
T ss_pred CCceeeE---CCCCHHHHHHHHHHHhhc-C-CcE--------------EEEecccccccc---CCc---CCCCHHHHHHH
Confidence 4466665 454447888887765431 1 111 467787777776 775 55555565444
Q ss_pred -HHHHHHhCCcE-EEEEcCCc-------------chHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHH
Q 015095 226 -VDNIEDRGINQ-VYIIGGDG-------------TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (413)
Q Consensus 226 -v~~l~~~~Id~-LivIGGdg-------------S~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~ 290 (413)
.+.-++.+++. .+++|||- +|..|..+.+..-+.|+. -++|=.|++ ..+-..-+.-+|.++
T Consensus 68 V~~iA~~~gf~~~~iiLggDHlGPn~Wq~~pa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--ca~d~~~L~d~~vA~ 143 (421)
T PRK15052 68 VYGIADKVGFPRERIILGGDHLGPNCWQQEPADAAMEKSVELVKAYVRAGFS--KIHLDASMS--CADDPIPLAPETVAE 143 (421)
T ss_pred HHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--ccCCCccCCHHHHHH
Confidence 44456678988 99999985 577777777777777886 578877777 222224556688899
Q ss_pred HHHHHHHHHHHhhh--ccCCcEEEE
Q 015095 291 EAQRAINAAHVEVE--SVENGVGIV 313 (413)
Q Consensus 291 ~~~~~i~~i~~~A~--s~~~rv~iV 313 (413)
.+++.|..+-..+. ....-+++|
T Consensus 144 Raa~L~~~aE~~~~~~~~~~~vYvI 168 (421)
T PRK15052 144 RAAVLCQAAESVATDCQREQLSYVI 168 (421)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEe
Confidence 99888886555544 323347777
No 178
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=40.53 E-value=57 Score=28.34 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=32.2
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeee
Q 015095 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (413)
Q Consensus 224 ~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIP 269 (413)
.+++...++++|.++++.||+-+..+. +.++++|.++.+++.+
T Consensus 90 d~~~~~~~~~~d~ivLvSgD~Df~~~i---~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 90 DALELAYKRRIDTIVLVSGDSDFVPLV---ERLRELGKRVIVVGFE 132 (149)
T ss_pred HHHHHhhhcCCCEEEEEECCccHHHHH---HHHHHcCCEEEEEccC
Confidence 345556667899999999999887654 4445568888777776
No 179
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.50 E-value=2.6e+02 Score=25.84 Aligned_cols=40 Identities=8% Similarity=0.162 Sum_probs=23.5
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
+.+.+.+...++|++++...+..- .+.+.+.+++ +++|.+
T Consensus 50 ~~~~~~~~~~~~dgiii~~~~~~~----~~~~~~~~~~--ipvV~~ 89 (270)
T cd06294 50 EEVKKMIQQKRVDGFILLYSREDD----PIIDYLKEEK--FPFVVI 89 (270)
T ss_pred HHHHHHHHHcCcCEEEEecCcCCc----HHHHHHHhcC--CCEEEE
Confidence 444555667789999998754432 2234444445 456654
No 180
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.08 E-value=3.1e+02 Score=25.50 Aligned_cols=89 Identities=11% Similarity=0.128 Sum_probs=53.6
Q ss_pred EEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcHHHHH
Q 015095 147 ACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIV 226 (413)
Q Consensus 147 iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~~iv 226 (413)
|||+...-..|-.+.+++++.+.+.+ ++ ..++- ..+........+.+
T Consensus 2 Igvv~~~~~~~~~~~~~~~i~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~~~i 48 (269)
T cd06281 2 IGCLVSDITNPLLAQLFSGAEDRLRA-AG-YSLLI-------------------------------ANSLNDPERELEIL 48 (269)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHH-cC-CEEEE-------------------------------EeCCCChHHHHHHH
Confidence 67888766678888888888877753 22 22211 11111112345778
Q ss_pred HHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeecccc
Q 015095 227 DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (413)
Q Consensus 227 ~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTID 273 (413)
+.+..+++|++++.+++.... .+.+.+++++ ++||.+=...+
T Consensus 49 ~~l~~~~vdgii~~~~~~~~~---~~~~~~~~~~--ipvV~i~~~~~ 90 (269)
T cd06281 49 RSFEQRRMDGIIIAPGDERDP---ELVDALASLD--LPIVLLDRDMG 90 (269)
T ss_pred HHHHHcCCCEEEEecCCCCcH---HHHHHHHhCC--CCEEEEecccC
Confidence 889999999999998764322 2334444445 55666644444
No 181
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=39.94 E-value=28 Score=26.68 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHH
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAA 250 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~ 250 (413)
..+..+.|++|+|| |+.||+-|+..|.
T Consensus 12 ~p~~a~vf~~~gID--fCCgG~~~L~eA~ 38 (56)
T PF04405_consen 12 DPRAARVFRKYGID--FCCGGNRSLEEAC 38 (56)
T ss_pred ChHHHHHHHHcCCc--ccCCCCchHHHHH
Confidence 35678899999999 6899999876543
No 182
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=39.58 E-value=3.9e+02 Score=26.45 Aligned_cols=91 Identities=11% Similarity=0.073 Sum_probs=52.2
Q ss_pred CCCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCc
Q 015095 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHD 221 (413)
Q Consensus 142 ~~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d 221 (413)
.+..+||++...-.-|-.+.++.++.+.+.+ +++..+ ++.++....+
T Consensus 22 ~~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~-~g~~~~--------------------------------~~~~~~~~~~ 68 (330)
T PRK15395 22 AADTRIGVTIYKYDDNFMSVVRKAIEKDAKA-APDVQL--------------------------------LMNDSQNDQS 68 (330)
T ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHHh-cCCeEE--------------------------------EEecCCCCHH
Confidence 3456788877655567778788888776653 221111 1112222222
Q ss_pred -HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeee
Q 015095 222 -TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (413)
Q Consensus 222 -~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIP 269 (413)
..+.++.|...++|++++.+.+..... ...+.+++.++ ++|.+=
T Consensus 69 ~~~~~i~~l~~~~vdgiIi~~~~~~~~~--~~l~~l~~~gi--PvV~vd 113 (330)
T PRK15395 69 KQNDQIDVLLAKGVKALAINLVDPAAAP--TVIEKARGQDV--PVVFFN 113 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCHHHHH--HHHHHHHHCCC--cEEEEc
Confidence 235677889999999999987753322 22244445554 455553
No 183
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=38.46 E-value=4.3e+02 Score=26.68 Aligned_cols=160 Identities=12% Similarity=0.148 Sum_probs=94.4
Q ss_pred EEccCCCCchhH-HHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCC-ceeeecCC-----CCc
Q 015095 149 IVTCGGLCPGIN-TVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGG-TILRTSRG-----GHD 221 (413)
Q Consensus 149 IvtsGG~apGmN-avIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GG-s~LGTsR~-----~~d 221 (413)
|+.+||+.=-++ .-+..+++.+.. .+. +--++-|-+..+. +...++.+.+..+...|= ..+++--. ...
T Consensus 140 VilSGGDPl~~~~~~L~~ll~~l~~-i~~--v~~iri~Tr~~v~-~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~ 215 (321)
T TIGR03822 140 VILTGGDPLVLSPRRLGDIMARLAA-IDH--VKIVRFHTRVPVA-DPARVTPALIAALKTSGKTVYVALHANHARELTAE 215 (321)
T ss_pred EEEeCCCcccCCHHHHHHHHHHHHh-CCC--ccEEEEeCCCccc-ChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHH
Confidence 667888766553 578888888764 332 2223333444322 223457777776666652 23544322 234
Q ss_pred HHHHHHHHHHhCCcEEE---EE-cCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHH
Q 015095 222 TNKIVDNIEDRGINQVY---II-GGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~Li---vI-GGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~ 297 (413)
..+.++.|++.||..+. ++ |=|++......|.+.+.+.|...--+.... .++| +--|.+..+.+.+.+.
T Consensus 216 ~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~----p~~g---~~~f~~~~~~~~~i~~ 288 (321)
T TIGR03822 216 ARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLD----LAPG---TAHFRVTIEEGQALVR 288 (321)
T ss_pred HHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecC----CCCC---cccccCcHHHHHHHHH
Confidence 66788889999997633 44 556677777888888777665422222221 2233 2345677777777777
Q ss_pred HHHHhhhccCCcEEEEEcCCCC
Q 015095 298 AAHVEVESVENGVGIVKLMGRY 319 (413)
Q Consensus 298 ~i~~~A~s~~~rv~iVEvMGR~ 319 (413)
.++...++.-.--+++|+.|+.
T Consensus 289 ~l~~~~~g~~~p~~v~~~~~~~ 310 (321)
T TIGR03822 289 ALRGRISGLAQPTYVLDIPGGH 310 (321)
T ss_pred HHHHhCCCCcceeEEEeCCCCC
Confidence 7766555543446788888864
No 184
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=37.95 E-value=3.9e+02 Score=27.89 Aligned_cols=149 Identities=15% Similarity=0.100 Sum_probs=72.3
Q ss_pred HHHHHHHHHh-CCcEEEEEcCCcchHHH---HHHHHHHHHcCCC-ceeeeeeccccCCCcccccccCchhHHHHHHHHHH
Q 015095 223 NKIVDNIEDR-GINQVYIIGGDGTQKGA---ALIYKEVEKRGLQ-VAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297 (413)
Q Consensus 223 ~~iv~~l~~~-~Id~LivIGGdgS~~~a---~~L~e~~~~~~~~-i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~ 297 (413)
+.|.+..+++ +...++|++.--+-... ..+.++++++ .+ ++||.++ ..+..+..+.-||+.|++.+.+.+-
T Consensus 77 ~aI~~~~~~~p~p~~i~V~~tc~~~liGdDi~~v~~~~~~~-~~~~~vi~v~---tpgf~g~~~~~G~~~a~~al~~~l~ 152 (415)
T cd01977 77 KNIIEAFKEFPDIKRMTVYTTCTTALIGDDIKAVAKEVMEE-LPDVDIFVCN---APGFAGPSQSKGHHVLNIAWINQKV 152 (415)
T ss_pred HHHHHHHHhCCCCcEEEEECCCchhhhcCCHHHHHHHHHHh-cCCCeEEEEe---CCCcCCcchhHHHHHHHHHHHHHhh
Confidence 3444455666 67889988755443221 2223333332 23 6777776 2333333345677777766554321
Q ss_pred HHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCcEEE-EEeCCCCc
Q 015095 298 AAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVI-VVAEGAGQ 376 (413)
Q Consensus 298 ~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~~~vI-vvaEGa~~ 376 (413)
.. ......+ .-.+-+|++. ... +.++.|++-+++-|.-++ +...|..-
T Consensus 153 ~~-~~~~~~~-------------------------~~~VNliG~~--~~~---~d~~ei~~lL~~~Gl~v~~~~~~~~t~ 201 (415)
T cd01977 153 GT-VEPEITS-------------------------DYTINYIGDY--NIQ---GDTEVLQKYFERMGIQVLSTFTGNGTY 201 (415)
T ss_pred Cc-CCcCcCC-------------------------CCcEEEEccC--CCc---ccHHHHHHHHHHcCCeEEEEECCCCCH
Confidence 10 0000000 0112333432 222 345667777777776554 55555542
Q ss_pred ccccccCCcccccCCCCCcccc-cHHHHHHHHHHhhh
Q 015095 377 EFVAQSMPAVDEKDASGNRLLL-DIGLWLTQKIKIQH 412 (413)
Q Consensus 377 ~~~~~~~~~~~~~Da~Gn~~l~-~vg~~L~~~I~~~~ 412 (413)
+-+.. --.|.-|+.+. ..+.++++.++++|
T Consensus 202 ~ei~~------~~~A~lnlv~~~~~~~~~A~~L~er~ 232 (415)
T cd01977 202 DDLRW------MHRAKLNVVNCARSAGYIANELKKRY 232 (415)
T ss_pred HHHHh------cccCCEEEEEchhHHHHHHHHHHHHh
Confidence 21111 11344455443 45677777777765
No 185
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=37.80 E-value=3.2e+02 Score=25.03 Aligned_cols=77 Identities=14% Similarity=0.253 Sum_probs=40.4
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccc-cccCchhHHHHHHHHHHHHHH
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDTAVEEAQRAINAAHV 301 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD-~S~GFdTAv~~~~~~i~~i~~ 301 (413)
...++.+...++|++++.+.+..-. .+ +.+++.+ +++|.+ +.+.+... .++|+|-- +....+.+.+..
T Consensus 45 ~~~~~~l~~~~~dgiii~~~~~~~~---~l-~~~~~~~--ipvV~~----~~~~~~~~~~~v~~d~~-~~g~~~~~~l~~ 113 (267)
T cd06283 45 KEYLESLLAYQVDGLIVNPTGNNKE---LY-QRLAKNG--KPVVLV----DRKIPELGVDTVTLDNY-EAAKEAVDHLIE 113 (267)
T ss_pred HHHHHHHHHcCcCEEEEeCCCCChH---HH-HHHhcCC--CCEEEE----cCCCCCCCCCEEEeccH-HHHHHHHHHHHH
Confidence 4567778889999999988765432 12 3333334 556654 44443221 34555431 122333333332
Q ss_pred hhhccCCcEEEE
Q 015095 302 EVESVENGVGIV 313 (413)
Q Consensus 302 ~A~s~~~rv~iV 313 (413)
. ++ +++.++
T Consensus 114 ~--g~-~~i~~l 122 (267)
T cd06283 114 K--GY-ERILFV 122 (267)
T ss_pred c--CC-CcEEEE
Confidence 2 33 467666
No 186
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=37.50 E-value=1.2e+02 Score=22.81 Aligned_cols=51 Identities=24% Similarity=0.474 Sum_probs=38.9
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccc
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTI 272 (413)
...+++++..++.|++++.+-= -+++.+...+.+.+++.++++ +.|+-.++
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTD-h~~~~~~~~~~~~~~~~gi~~-i~G~E~~~ 65 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITD-HGNLFGAVEFYKAAKKAGIKP-IIGLEANI 65 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEee-CCcccCHHHHHHHHHHcCCeE-EEEEEEEe
Confidence 4578999999999999876654 347888888888888888753 66665544
No 187
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=37.40 E-value=3.9e+02 Score=27.95 Aligned_cols=152 Identities=16% Similarity=0.176 Sum_probs=83.8
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHH---HHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHH
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKG---AALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~---a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i 299 (413)
+.|.+..++++-+.++|+.+--+-.. ...+.+++++. +.++|+.|.. +...+.+++-||+.|++.+.+.+..
T Consensus 79 ~aI~~~~~~~~P~~I~V~ttC~~~iIGdDi~~v~~~~~~~-~~~pvi~v~t---~gf~g~~~~~G~~~a~~al~~~~~~- 153 (426)
T cd01972 79 DTIKEAYSRYKPKAIFVATSCATGIIGDDVESVVEELEDE-IGIPVVALHC---EGFKGKHWRSGFDAAFHGILRHLVP- 153 (426)
T ss_pred HHHHHHHHhCCCCEEEEECCChHHHhccCHHHHHHHHHHh-hCCCEEEEeC---CccCCccHhHHHHHHHHHHHHHhcC-
Confidence 44555566789999999886543222 12233333322 3456776653 3444446778899888877653321
Q ss_pred HHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCC-CCCChhhHHHHHHHHHHhCCcEEEEE-eCCCCcc
Q 015095 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPF-YLEGPGGLFEFIERQLKENGHMVIVV-AEGAGQE 377 (413)
Q Consensus 300 ~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf-~l~~~~~~~e~i~~r~~~~~~~vIvv-aEGa~~~ 377 (413)
.... ......+-+|++.+. +... .+.+..|++-+++-|..++.+ ..|..-+
T Consensus 154 --~~~~------------------------~~~~~~VNliG~~~~~~~~~-~~d~~ei~~lL~~~Gi~v~~~~~~~~~~~ 206 (426)
T cd01972 154 --PQDP------------------------TKQEDSVNIIGLWGGPERTE-QEDVDEFKRLLNELGLRVNAIIAGGCSVE 206 (426)
T ss_pred --CCCC------------------------CCCCCCEEEEccCCCccccc-cccHHHHHHHHHHcCCeEEEEeCCCCCHH
Confidence 0000 000224556677654 2221 256677888888878666544 4445422
Q ss_pred cccccCCcccccCCCCCcccc-cHHHHHHHHHHhhh
Q 015095 378 FVAQSMPAVDEKDASGNRLLL-DIGLWLTQKIKIQH 412 (413)
Q Consensus 378 ~~~~~~~~~~~~Da~Gn~~l~-~vg~~L~~~I~~~~ 412 (413)
-+.. --+|.-|+.+. ..|..+++.++++|
T Consensus 207 ei~~------~~~A~lniv~~~~~g~~~a~~Lee~~ 236 (426)
T cd01972 207 ELER------ASEAAANVTLCLDLGYYLGAALEQRF 236 (426)
T ss_pred HHHh------cccCCEEEEEChhHHHHHHHHHHHHh
Confidence 2211 12566677665 46778888887766
No 188
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=36.61 E-value=2.8e+02 Score=26.75 Aligned_cols=67 Identities=9% Similarity=0.195 Sum_probs=42.5
Q ss_pred eeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCC-CCcHH
Q 015095 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDTN 223 (413)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~-~~d~~ 223 (413)
..||++...-.-|-.+.++.++-..+.+ ++ .+++ +..+.. .....
T Consensus 57 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~~ 102 (327)
T PRK10423 57 RTIGMLITASTNPFYSELVRGVERSCFE-RG-YSLV--------------------------------LCNTEGDEQRMN 102 (327)
T ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCCCCHHHHH
Confidence 4788887655567788888888777653 22 2221 111111 12234
Q ss_pred HHHHHHHHhCCcEEEEEcCCcc
Q 015095 224 KIVDNIEDRGINQVYIIGGDGT 245 (413)
Q Consensus 224 ~iv~~l~~~~Id~LivIGGdgS 245 (413)
++++.|...++|++++.+.+..
T Consensus 103 ~~~~~l~~~~vdGiI~~~~~~~ 124 (327)
T PRK10423 103 RNLETLMQKRVDGLLLLCTETH 124 (327)
T ss_pred HHHHHHHHcCCCEEEEeCCCcc
Confidence 6777888899999999987654
No 189
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=36.57 E-value=1.6e+02 Score=27.48 Aligned_cols=85 Identities=19% Similarity=0.212 Sum_probs=47.6
Q ss_pred eeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcHHH
Q 015095 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (413)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~~ 224 (413)
.++.++ || .|+ ++..+++.+...|++.+|.|. +||-. . +-....++.|...+-.+|-.+-+.+.-|.
T Consensus 49 ~~vfll--G~-~~~---v~~~~~~~l~~~yP~l~i~g~-~g~f~---~---~~~~~i~~~I~~s~~dil~VglG~PkQE~ 115 (177)
T TIGR00696 49 LPIFLY--GG-KPD---VLQQLKVKLIKEYPKLKIVGA-FGPLE---P---EERKAALAKIARSGAGIVFVGLGCPKQEI 115 (177)
T ss_pred CeEEEE--CC-CHH---HHHHHHHHHHHHCCCCEEEEE-CCCCC---h---HHHHHHHHHHHHcCCCEEEEEcCCcHhHH
Confidence 455555 44 444 444445555667999999887 66642 1 11133466777777766655555444455
Q ss_pred HHHHH-HHhCCcEEEEEcC
Q 015095 225 IVDNI-EDRGINQVYIIGG 242 (413)
Q Consensus 225 iv~~l-~~~~Id~LivIGG 242 (413)
.+... ..++...++-+||
T Consensus 116 ~~~~~~~~~~~~v~~gvGg 134 (177)
T TIGR00696 116 WMRNHRHLKPDAVMIGVGG 134 (177)
T ss_pred HHHHhHHhCCCcEEEEece
Confidence 44444 3344555555666
No 190
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=36.35 E-value=2.7e+02 Score=26.97 Aligned_cols=40 Identities=18% Similarity=0.371 Sum_probs=24.8
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
.++++.+..+++|++++.+...+.. +.+.+.+.+ +|+|.+
T Consensus 105 ~~~~~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~--iPvV~~ 144 (329)
T TIGR01481 105 VQVLNTLLSKQVDGIIFMGGTITEK----LREEFSRSP--VPVVLA 144 (329)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCChH----HHHHHHhcC--CCEEEE
Confidence 4567778889999999987543322 223344445 456654
No 191
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=36.27 E-value=1.6e+02 Score=28.83 Aligned_cols=99 Identities=11% Similarity=0.048 Sum_probs=46.6
Q ss_pred EEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhH--HHHHHHHHHHHHHhhh--ccCCcEEEEE
Q 015095 239 IIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTA--VEEAQRAINAAHVEVE--SVENGVGIVK 314 (413)
Q Consensus 239 vIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTA--v~~~~~~i~~i~~~A~--s~~~rv~iVE 314 (413)
.+|-+++++.|..+...+++ .+++|||.+= |.||-..+..-.-. .+.+++.+.++. +++ .+ ..|.+|=
T Consensus 44 ~~g~~~~~k~A~~v~~~~d~-~f~~PIv~lv-----DtpG~~~g~~aE~~G~~~a~A~l~~a~a-~a~~~~v-P~IsvI~ 115 (238)
T TIGR03134 44 EVGLDEALALAQAVLDVIEA-DDKRPIVVLV-----DTPSQAYGRREELLGINQALAHLAKALA-LARLAGH-PVIGLIY 115 (238)
T ss_pred cCChHHHHHHHHHHHHHHHh-cCCCCEEEEE-----eCCCCCCCHHHHHHHHHHHHHHHHHHHH-HhhcCCC-CEEEEEe
Confidence 34556677777766554432 3556777662 33333222211111 222333333332 222 23 3466663
Q ss_pred cCCCCcchHHHHHhhhcCCccEEE-cCCCCCCCCChh
Q 015095 315 LMGRYSGFISMYATLASRDVDCCL-IPESPFYLEGPG 350 (413)
Q Consensus 315 vMGR~sG~LA~~aaLA~~~ad~il-IPE~pf~l~~~~ 350 (413)
=-|-..||||+ ++ ++|.+| .|...+..-+++
T Consensus 116 g~a~ggg~lam--g~---~ad~v~Alp~A~i~vm~~e 147 (238)
T TIGR03134 116 GKAISGAFLAH--GL---QADRIIALPGAMVHVMDLE 147 (238)
T ss_pred CCccHHHHHHH--cc---CcCeEEEcCCcEEEecCHH
Confidence 33333688887 22 467766 666655433333
No 192
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=36.16 E-value=1.3e+02 Score=32.91 Aligned_cols=87 Identities=25% Similarity=0.267 Sum_probs=56.3
Q ss_pred CchhHHHHHHHHHHHHHHhhh---------ccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHH
Q 015095 284 GFDTAVEEAQRAINAAHVEVE---------SVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFE 354 (413)
Q Consensus 284 GFdTAv~~~~~~i~~i~~~A~---------s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e 354 (413)
|=.|++++.++-.+--+++|+ ||.+-|-|-.+-|+.-.-+|+ |-||.+++|++++-|---+++- .-++
T Consensus 665 ~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRVal-aeLal~~PDvlILDEPTNNLDI--ESID 741 (807)
T KOG0066|consen 665 GEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVAL-AELALGGPDVLILDEPTNNLDI--ESID 741 (807)
T ss_pred cccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHH-HHHhcCCCCEEEecCCCCCcch--hhHH
Confidence 556788887765544444442 444557788888888777764 5566668999888776444431 2345
Q ss_pred HHHHHHHhCCcEEEEEeCC
Q 015095 355 FIERQLKENGHMVIVVAEG 373 (413)
Q Consensus 355 ~i~~r~~~~~~~vIvvaEG 373 (413)
.|.+-+.+...+||+|+--
T Consensus 742 ALaEAIney~GgVi~VsHD 760 (807)
T KOG0066|consen 742 ALAEAINEYNGGVIMVSHD 760 (807)
T ss_pred HHHHHHHhccCcEEEEecc
Confidence 5555666666777777744
No 193
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=36.09 E-value=42 Score=30.97 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=31.7
Q ss_pred HHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHH
Q 015095 227 DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 289 (413)
Q Consensus 227 ~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv 289 (413)
+.+++++.++|++-||-++-.........++....++||.|| |+|++.-.
T Consensus 37 ~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGI-------------C~G~Qlla 86 (191)
T PRK06774 37 TDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGV-------------CLGHQALG 86 (191)
T ss_pred HHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEE-------------CHHHHHHH
Confidence 335667899999999999864432222222222335778888 88977543
No 194
>PLN02204 diacylglycerol kinase
Probab=35.54 E-value=58 Score=36.25 Aligned_cols=70 Identities=23% Similarity=0.307 Sum_probs=42.4
Q ss_pred cEEEEEcccchhccCCCeeeCChhhHhhhhhcCC---ceeeecCCCCcHHHHHHHH---HHhCCcEEEEEcCCcchHHHH
Q 015095 177 DEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGG---TILRTSRGGHDTNKIVDNI---EDRGINQVYIIGGDGTQKGAA 250 (413)
Q Consensus 177 ~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GG---s~LGTsR~~~d~~~iv~~l---~~~~Id~LivIGGdgS~~~a~ 250 (413)
.+++-|.|=+.|=- .- .-.|+.|..+....| .++-|.|.++-. .+++.+ ...+.|+++++||||++..+.
T Consensus 160 k~llVivNP~sGkg--~~-~~~~~~V~p~f~~a~i~~~v~~T~~aghA~-d~~~~~~~~~l~~~D~VVaVGGDGt~nEVl 235 (601)
T PLN02204 160 KNLLVFVHPLSGKG--SG-SRTWETVSPIFIRAKVKTKVIVTERAGHAF-DVMASISNKELKSYDGVIAVGGDGFFNEIL 235 (601)
T ss_pred ceEEEEECCCCCCc--ch-HHHHHHHHHHHHHcCCeEEEEEecCcchHH-HHHHHHhhhhccCCCEEEEEcCccHHHHHH
Confidence 46677766555521 11 123666777666655 255677764333 333333 356789999999999987654
No 195
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=35.49 E-value=3.2e+02 Score=26.98 Aligned_cols=62 Identities=18% Similarity=0.218 Sum_probs=44.7
Q ss_pred hhhhcCCceeeecCC---CCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 204 DIHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 204 ~i~~~GGs~LGTsR~---~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
.+...|+++..+.+. ..|+...+..|++.+-+.+++.+... .+..+.+.+++.|+++++++.
T Consensus 161 ~~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~~ 225 (347)
T cd06335 161 ALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVGNGP---EGAQIANGMAKLGWKVPIISH 225 (347)
T ss_pred HHHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEecCh---HHHHHHHHHHHcCCCCcEecc
Confidence 345567777766554 35788999999999999998887433 334466777778988777763
No 196
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=35.31 E-value=1.1e+02 Score=31.14 Aligned_cols=78 Identities=13% Similarity=0.183 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCC-Ccc---cccccCchhHHHHHHHHH
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND-IAV---IDKSFGFDTAVEEAQRAI 296 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDND-I~g---tD~S~GFdTAv~~~~~~i 296 (413)
++++.+..|.+ .+|.+++|||..|-.+ .+|++-+++.+.+.-.|-=+.=|+-+ +.+ +--|=|..|=-..+.+.+
T Consensus 199 ~RQ~a~~~La~-~vD~miVVGg~~SsNT-~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~ 276 (298)
T PRK01045 199 NRQEAVKELAP-QADLVIVVGSKNSSNS-NRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVI 276 (298)
T ss_pred HHHHHHHHHHh-hCCEEEEECCCCCccH-HHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHH
Confidence 45666677755 6999999999999876 45888888777555555555555422 111 112445555444445555
Q ss_pred HHHH
Q 015095 297 NAAH 300 (413)
Q Consensus 297 ~~i~ 300 (413)
+.+.
T Consensus 277 ~~l~ 280 (298)
T PRK01045 277 ARLK 280 (298)
T ss_pred HHHH
Confidence 4443
No 197
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=35.20 E-value=3e+02 Score=27.85 Aligned_cols=64 Identities=17% Similarity=0.367 Sum_probs=46.0
Q ss_pred HhhhhhcCCceeeecCC---CCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 202 VNDIHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 202 V~~i~~~GGs~LGTsR~---~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
...+...|+.+.+..+. ..|+...+..++..+-|++++ +|++. . +..+.+.+++.|++.++++.
T Consensus 182 ~~~~~~~G~~v~~~~~~~~g~~D~~~~v~~l~~~~~d~v~~-~~~~~-~-~~~~~k~~~~~G~~~~~i~~ 248 (369)
T PRK15404 182 KDGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFVYY-GGYHP-E-MGQILRQAREAGLKTQFMGP 248 (369)
T ss_pred HHHHHHcCCEEEEEEeeCCCCCchHHHHHHHHhcCCCEEEE-CCCch-H-HHHHHHHHHHCCCCCeEEec
Confidence 34567788888877655 468999999999999998765 44443 2 23355777788988877755
No 198
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=35.16 E-value=2.5e+02 Score=28.32 Aligned_cols=60 Identities=15% Similarity=0.085 Sum_probs=32.5
Q ss_pred CcHHHHHHHHHHh--CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccc
Q 015095 220 HDTNKIVDNIEDR--GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280 (413)
Q Consensus 220 ~d~~~iv~~l~~~--~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD 280 (413)
.++.++++.+++. +.++++|+-|-+||.-...+....- .+++.+||..=.-.--+.+.+|
T Consensus 57 ~~~~~la~~i~~~~~~~~GvVVtHGTDTme~tA~~Ls~~l-~~l~kPVVlTGa~~P~~~~~sD 118 (313)
T PF00710_consen 57 EDWLELARAIQAALDDYDGVVVTHGTDTMEETAFFLSLLL-DNLDKPVVLTGAMRPLSAPGSD 118 (313)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEE--STTHHHHHHHHHHHE-ES-SSEEEEE--SS-TTSTT-S
T ss_pred HHHHHHHHHHHHHHHhcCeEEEecCchHHHHHHHHHHHHh-cCCCCCEEEeCCcCCCcCCCCc
Confidence 4555555555554 5999999999999987555544432 2445666655333333444444
No 199
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=34.95 E-value=49 Score=32.36 Aligned_cols=88 Identities=23% Similarity=0.360 Sum_probs=56.6
Q ss_pred EEEEEcccchhccCCCeeeCChhhHhhhhhcCCc--ee-eecCC--CCcHHHHHHHHHHhCCcEEEEEcCCcchH-----
Q 015095 178 EILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT--IL-RTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGTQK----- 247 (413)
Q Consensus 178 ~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs--~L-GTsR~--~~d~~~iv~~l~~~~Id~LivIGGdgS~~----- 247 (413)
..+-+.+|-.| .....++.....+...+|- +. =|+|. ...++..+..+...||+.+++++||-.-.
T Consensus 30 d~v~Vt~~~~g----~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~ 105 (274)
T cd00537 30 DFVSVTDGAGG----STRDMTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPG 105 (274)
T ss_pred CEEEeCCCCCC----chhhhHHHHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCC
Confidence 45555555544 2233445555566666552 11 14554 24688889999999999999999986543
Q ss_pred -------HHHHHHHHHHHc---CCCceeeeee
Q 015095 248 -------GAALIYKEVEKR---GLQVAVAGIP 269 (413)
Q Consensus 248 -------~a~~L~e~~~~~---~~~i~vvgIP 269 (413)
.+..|.+.+++. ++.+.+.+.|
T Consensus 106 ~~~~~~~~a~~Li~~i~~~~~~~~~igva~yP 137 (274)
T cd00537 106 AKPVGFVYAVDLVELIRKENGGGFSIGVAAYP 137 (274)
T ss_pred CCCCCCCCHHHHHHHHHHhcCCCCccccccCC
Confidence 377777777663 5666677777
No 200
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=34.90 E-value=39 Score=36.79 Aligned_cols=62 Identities=23% Similarity=0.408 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhC---CcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHH
Q 015095 222 TNKIVDNIEDRG---INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 289 (413)
Q Consensus 222 ~~~iv~~l~~~~---Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv 289 (413)
.+++++.+.+.+ .|.++-|||--++..|..++-.. .+| +++|.||-|. ++.+|-|+|.-|++
T Consensus 255 v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y-~rG--i~~i~vPTTl---lA~vDss~ggkt~i 319 (542)
T PRK14021 255 ANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVAATW-MRG--IRYVNCPTSL---LAMVDASTGGKTGI 319 (542)
T ss_pred HHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHHHHH-HcC--CCEEEeCChH---HhhhccccCCceEE
Confidence 567778888884 89999999988888888776532 235 6799999986 13334444444443
No 201
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=34.78 E-value=2.3e+02 Score=25.45 Aligned_cols=45 Identities=13% Similarity=0.257 Sum_probs=29.6
Q ss_pred hHhhhhhcCCceeeec-CCC---CcHHHHHHHHHHhCC-cEEEEEcCCcc
Q 015095 201 VVNDIHKRGGTILRTS-RGG---HDTNKIVDNIEDRGI-NQVYIIGGDGT 245 (413)
Q Consensus 201 ~V~~i~~~GGs~LGTs-R~~---~d~~~iv~~l~~~~I-d~LivIGGdgS 245 (413)
.++.....+-.++|-| ... ..+.++++.|++.++ +..+++||.-.
T Consensus 44 ~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~v 93 (134)
T TIGR01501 44 FIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLV 93 (134)
T ss_pred HHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcC
Confidence 3455555555566633 322 357889999999998 55677898754
No 202
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=34.77 E-value=36 Score=29.13 Aligned_cols=44 Identities=18% Similarity=0.370 Sum_probs=23.8
Q ss_pred HHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeecc
Q 015095 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (413)
Q Consensus 225 iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkT 271 (413)
+.+.+.+..++.++++-||+-+..+. +.++++|.++-+++.|..
T Consensus 87 ~~~~~~~~~~d~ivLvSgD~Df~~~v---~~l~~~g~~V~v~~~~~~ 130 (146)
T PF01936_consen 87 ILELAYENPPDTIVLVSGDSDFAPLV---RKLRERGKRVIVVGAEDS 130 (146)
T ss_dssp HHHHG--GG-SEEEEE---GGGHHHH---HHHHHH--EEEEEE-GGG
T ss_pred HHHHhhccCCCEEEEEECcHHHHHHH---HHHHHcCCEEEEEEeCCC
Confidence 34444445679999999999987654 445567888888876443
No 203
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=34.25 E-value=2.6e+02 Score=26.85 Aligned_cols=61 Identities=21% Similarity=0.338 Sum_probs=43.2
Q ss_pred hhhcCCceeeecCC---CCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 205 IHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 205 i~~~GGs~LGTsR~---~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
+...|++++.+... ..++...+..+++.+.+.+++.+..+. +..+.+++++.|+++++++.
T Consensus 160 ~~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~d~i~~~~~~~~---~~~~~~~~~~~g~~~~i~~~ 223 (334)
T cd06347 160 FKKLGGEIVAEETFNAGDTDFSAQLTKIKAKNPDVIFLPGYYTE---VGLIAKQARELGIKVPILGG 223 (334)
T ss_pred HHHcCCEEEEEEEecCCCCcHHHHHHHHHhcCCCEEEEcCchhh---HHHHHHHHHHcCCCCcEEec
Confidence 34467777766543 357888899999999999888765543 34455677777888777764
No 204
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=34.02 E-value=95 Score=29.32 Aligned_cols=55 Identities=13% Similarity=0.265 Sum_probs=37.5
Q ss_pred hhcCCceeeecCCC-CcHHHHHHHHHH-hCCcEEEEEcCCcc-hHHHHHHHHHHHHcCC
Q 015095 206 HKRGGTILRTSRGG-HDTNKIVDNIED-RGINQVYIIGGDGT-QKGAALIYKEVEKRGL 261 (413)
Q Consensus 206 ~~~GGs~LGTsR~~-~d~~~iv~~l~~-~~Id~LivIGGdgS-~~~a~~L~e~~~~~~~ 261 (413)
...|-++.|++++. ..+++++.++-. -+|..|++.|-+-. +.+.+.|. ++.+.|+
T Consensus 38 l~~gaAI~G~~~TENlGIEKvI~NvisNpnIRflilcG~Ev~GH~~Gqsl~-aLh~NGi 95 (176)
T PF04208_consen 38 LDAGAAIAGPCKTENLGIEKVIANVISNPNIRFLILCGSEVKGHLTGQSLL-ALHENGI 95 (176)
T ss_pred hhcCceeeecccccccCHHHHHHHHhcCCCceEEEEecCccCCCcchHHHH-HHHHcCC
Confidence 34456899999984 679999888755 59999999987753 44444442 3334454
No 205
>PRK04011 peptide chain release factor 1; Provisional
Probab=33.85 E-value=2.3e+02 Score=30.03 Aligned_cols=53 Identities=21% Similarity=0.164 Sum_probs=35.3
Q ss_pred chHHHHHhhhcCCccEEEcCCCCCCC-------------------------------------CChhhHHHHHHHHHHhC
Q 015095 321 GFISMYATLASRDVDCCLIPESPFYL-------------------------------------EGPGGLFEFIERQLKEN 363 (413)
Q Consensus 321 G~LA~~aaLA~~~ad~ilIPE~pf~l-------------------------------------~~~~~~~e~i~~r~~~~ 363 (413)
|.=....||..+.++..||+|.-+.. .....+++.|.+..++.
T Consensus 300 G~~~V~~Ale~GAVetLLV~d~l~~~r~~~~c~~c~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~v~~l~e~a~~~ 379 (411)
T PRK04011 300 GEEEVRKALEMGAVDTLLISEDLRKDRVTYKCPNCGYEEEKTVKRREELPEKTCPKCGSELEIVEEEDIIEELSELAEQS 379 (411)
T ss_pred cHHHHHHHHHcCCceEEEEeccccceeEEEEcCCCCcceeeecccccccccccCcccCcccccchhhhHHHHHHHHHHHc
Confidence 66677788888778889898753220 11234667777777777
Q ss_pred CcEEEEEeCC
Q 015095 364 GHMVIVVAEG 373 (413)
Q Consensus 364 ~~~vIvvaEG 373 (413)
|.-|.+++.-
T Consensus 380 g~~v~iis~~ 389 (411)
T PRK04011 380 GTKVEVISTD 389 (411)
T ss_pred CCEEEEECCC
Confidence 7777777654
No 206
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=33.73 E-value=81 Score=36.34 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHH
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIY 253 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~ 253 (413)
.++++++.+++.++|.++-|||--.++.|..++
T Consensus 527 ~v~~~~~~~~~~~~D~IIaiGGGSviD~AK~ia 559 (862)
T PRK13805 527 TVRKGAELMRSFKPDTIIALGGGSPMDAAKIMW 559 (862)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHH
Confidence 467889999999999999999999999988875
No 207
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=33.69 E-value=4e+02 Score=24.90 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=18.3
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCC
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGD 243 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGd 243 (413)
...++++.+...++|++++.+.+
T Consensus 44 ~~~~~~~~l~~~~vdgiii~~~~ 66 (260)
T cd06304 44 DYEPNLRQLAAQGYDLIFGVGFG 66 (260)
T ss_pred HHHHHHHHHHHcCCCEEEECCcc
Confidence 34567788888999999998755
No 208
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=33.68 E-value=3.8e+02 Score=24.58 Aligned_cols=82 Identities=9% Similarity=0.117 Sum_probs=47.3
Q ss_pred EEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeec-CCCCcHHHH
Q 015095 147 ACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTS-RGGHDTNKI 225 (413)
Q Consensus 147 iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTs-R~~~d~~~i 225 (413)
|||+...-..|-.+..+.++-+.+.. ++ .++ .+..+ +......+.
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~-~g-~~~--------------------------------~~~~~~~~~~~~~~~ 47 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYE-NG-YQM--------------------------------LLMNTNFSIEKEIEA 47 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHH-CC-CEE--------------------------------EEEeCCCCHHHHHHH
Confidence 67777666677777777777766642 22 121 11111 122233466
Q ss_pred HHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 226 VDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 226 v~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
++.|...++|++++.+.+.+.. +.+.+++.++ ++|.+
T Consensus 48 i~~l~~~~~dgii~~~~~~~~~----~~~~~~~~~i--pvv~~ 84 (259)
T cd01542 48 LELLARQKVDGIILLATTITDE----HREAIKKLNV--PVVVV 84 (259)
T ss_pred HHHHHhcCCCEEEEeCCCCCHH----HHHHHhcCCC--CEEEE
Confidence 7778889999999998765422 2334444454 45544
No 209
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=33.62 E-value=31 Score=31.61 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=31.2
Q ss_pred cCCCCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeec
Q 015095 216 SRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (413)
Q Consensus 216 sR~~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPk 270 (413)
-|+.+.+.++++++++.+++.+|.+-|-...-. -.++-. ...||||||-
T Consensus 38 HR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lp-gvva~~-----t~~PVIgvP~ 86 (150)
T PF00731_consen 38 HRTPERLLEFVKEYEARGADVIIAVAGMSAALP-GVVASL-----TTLPVIGVPV 86 (150)
T ss_dssp TTSHHHHHHHHHHTTTTTESEEEEEEESS--HH-HHHHHH-----SSS-EEEEEE
T ss_pred cCCHHHHHHHHHHhccCCCEEEEEECCCcccch-hhheec-----cCCCEEEeec
Confidence 466666778888888788888887766654432 223322 3678999994
No 210
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=33.18 E-value=4e+02 Score=25.65 Aligned_cols=102 Identities=12% Similarity=0.078 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhh-hhhcCCceeeecCCC---CcHHHHHHHHHHhCC
Q 015095 159 INTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVND-IHKRGGTILRTSRGG---HDTNKIVDNIEDRGI 234 (413)
Q Consensus 159 mNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~-i~~~GGs~LGTsR~~---~d~~~iv~~l~~~~I 234 (413)
-....+.++..+.+.++..+|..+.... .+-.-....+.. +...|.++.++.... .|+...+..+++.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~v~~v~~~~------~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~~~ 191 (334)
T cd06342 118 DDQQGPAAAKYAVETLKAKKVAIIDDKT------AYGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKAANP 191 (334)
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEEeCCc------chhhHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhcCC
Confidence 3445555555554444445555543221 110001122222 344577777765543 578888999999999
Q ss_pred cEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeee
Q 015095 235 NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (413)
Q Consensus 235 d~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIP 269 (413)
+.+++.| .+. .+..+.+.+++.|++.++++..
T Consensus 192 ~~vi~~~-~~~--~~~~~~~~~~~~g~~~~~~~~~ 223 (334)
T cd06342 192 DAVFFGG-YYP--EAGPLVRQMRQLGLKAPFMGGD 223 (334)
T ss_pred CEEEEcC-cch--hHHHHHHHHHHcCCCCcEEecC
Confidence 9887655 332 2344667777778877666653
No 211
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=33.18 E-value=87 Score=33.77 Aligned_cols=52 Identities=10% Similarity=0.251 Sum_probs=39.0
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeecccc
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTID 273 (413)
+.+..+..|....+|.++||||.-|-.+.+ |++-+++++.+.-.|-=|.-|+
T Consensus 350 eRQdA~~~L~~~~vDlmiVVGG~NSSNT~~-L~eIa~~~g~~sy~Ie~~~eI~ 401 (460)
T PLN02821 350 ERQDAMYKLVEEKLDLMLVVGGWNSSNTSH-LQEIAEHKGIPSYWIDSEERIG 401 (460)
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCCccHHH-HHHHHHHhCCCEEEECCHHHcC
Confidence 456777777666899999999999987755 7788887776655555566565
No 212
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=33.14 E-value=1.3e+02 Score=29.37 Aligned_cols=99 Identities=21% Similarity=0.270 Sum_probs=62.0
Q ss_pred ccccCCCcccccccCchhHHHHHHHHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCC-
Q 015095 270 KTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEG- 348 (413)
Q Consensus 270 kTIDNDI~gtD~S~GFdTAv~~~~~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~- 348 (413)
.|+.-|+.+-....|..-+ +.-..+-..+.............-++-|+.-=-+|.++.||. +|++++.=|-.-.+|.
T Consensus 95 ~tV~~evafg~~n~g~~~~-e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~-~P~iliLDEPta~LD~~ 172 (235)
T COG1122 95 PTVEDEVAFGLENLGLPRE-EIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAM-GPEILLLDEPTAGLDPK 172 (235)
T ss_pred CcHHHHHhhchhhcCCCHH-HHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHc-CCCEEEEcCCCCCCCHH
Confidence 5777778777778887765 222222233333333333445677888888889999999999 7999998776555553
Q ss_pred -hhhHHHHHHHHHHhC-CcEEEEEe
Q 015095 349 -PGGLFEFIERQLKEN-GHMVIVVA 371 (413)
Q Consensus 349 -~~~~~e~i~~r~~~~-~~~vIvva 371 (413)
...+++.+++ +++. +..+|++.
T Consensus 173 ~~~~l~~~l~~-L~~~~~~tii~~t 196 (235)
T COG1122 173 GRRELLELLKK-LKEEGGKTIIIVT 196 (235)
T ss_pred HHHHHHHHHHH-HHhcCCCeEEEEe
Confidence 2334554443 4444 44555554
No 213
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=33.07 E-value=64 Score=29.43 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=29.0
Q ss_pred HhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHH
Q 015095 231 DRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (413)
Q Consensus 231 ~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~ 291 (413)
..++|++++.||.++......+...++...-++|+.|| |+|++-....
T Consensus 40 ~~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGI-------------C~G~Qlla~~ 87 (184)
T cd01743 40 LLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGV-------------CLGHQAIAEA 87 (184)
T ss_pred hcCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEE-------------CHhHHHHHHH
Confidence 35799999999999854432222221111223667777 9998855544
No 214
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=33.04 E-value=1.3e+02 Score=26.67 Aligned_cols=110 Identities=17% Similarity=0.242 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCc---EEEEEcCCc--chHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccC-chhHHHHHHHHH
Q 015095 223 NKIVDNIEDRGIN---QVYIIGGDG--TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFG-FDTAVEEAQRAI 296 (413)
Q Consensus 223 ~~iv~~l~~~~Id---~LivIGGdg--S~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~G-FdTAv~~~~~~i 296 (413)
..+...+++...+ .++.+--|- .-..|..|.+++++++..+.+..++. +...| .+ |..++....+.+
T Consensus 8 nsl~~~~~~~~~~~~~~~~Ll~SDT~~G~~~a~il~~~l~~~g~~v~~~~i~~-----l~~~~--~~~F~~Gl~~Lv~~~ 80 (136)
T PF09651_consen 8 NSLVRLLEKGKDDDKDEVVLLHSDTPDGRLCAEILKEYLEEKGINVEVVEIEG-----LQTED--PEKFREGLRNLVRWV 80 (136)
T ss_dssp HHHHHHHHHHT--GGGEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEE--------E------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCccccCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeee-----ecccc--hHHHHHHHHHHHHHH
Confidence 3444444444432 455555442 35567788888888888877777664 33222 22 888888888877
Q ss_pred HHHHHhhhccCCcEEEEEcCCCCc---chHHHHHhhhcCCccEEEcCCC
Q 015095 297 NAAHVEVESVENGVGIVKLMGRYS---GFISMYATLASRDVDCCLIPES 342 (413)
Q Consensus 297 ~~i~~~A~s~~~rv~iVEvMGR~s---G~LA~~aaLA~~~ad~ilIPE~ 342 (413)
...-..+......++| =.-|++- +|+.+.+.+ . +..++||.|.
T Consensus 81 ~~~v~~~~~~~~~v~~-n~TGGfK~~~~~~~~~g~~-~-~~~v~Yi~E~ 126 (136)
T PF09651_consen 81 AEEVKNYKGRGYEVIF-NATGGFKAEIAYLTLLGML-Y-GDPVYYIFEE 126 (136)
T ss_dssp HHHHHHHHHTT-EEEE-E-SSS-HHHHHHHHHHHHH-T---EEEEEETT
T ss_pred HHHHHHhhcCCCeEEE-EeCCChHHHHHHHHHHHHH-c-CCCEEEEEcC
Confidence 7765544444344544 4455543 555555555 3 6889999996
No 215
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=33.03 E-value=78 Score=27.56 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeee
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIP 269 (413)
+.+.+.+.+++++||.+++.=-........++.+++++.+.+ |-.||
T Consensus 129 ~~~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~~~~v~--v~~vP 175 (175)
T PF13727_consen 129 DLDDLPELVREHDIDEVIIALPWSEEEQIKRIIEELENHGVR--VRVVP 175 (175)
T ss_dssp -GGGHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHHTTT-E--EEE--
T ss_pred CHHHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHHhCCCE--EEEeC
Confidence 367888889999999999998888888888999999877755 44444
No 216
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=33.02 E-value=4.9e+02 Score=25.96 Aligned_cols=114 Identities=25% Similarity=0.223 Sum_probs=0.0
Q ss_pred eccccCCCccccccc-Cchh-HHHHHHHHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCcc-EEEcCCCCCC
Q 015095 269 PKTIDNDIAVIDKSF-GFDT-AVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVD-CCLIPESPFY 345 (413)
Q Consensus 269 PkTIDNDI~gtD~S~-GFdT-Av~~~~~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad-~ilIPE~pf~ 345 (413)
|+|=..|..+.+.++ -||- |++++.+.-+. .+..=-++=+||-...-=++.-+||- |+| .++|.-..|.
T Consensus 21 ~~~~~~~~~gv~~~in~~D~~AvEeAlrLke~-------~~~~eV~vlt~Gp~~a~~~lr~aLAm-GaDraili~d~~~~ 92 (260)
T COG2086 21 PDTGTLDRSGVPLSINPFDLNAVEEALRLKEK-------GYGGEVTVLTMGPPQAEEALREALAM-GADRAILITDRAFA 92 (260)
T ss_pred cCCCccccCCCCcccChhhHHHHHHHHHhhcc-------CCCceEEEEEecchhhHHHHHHHHhc-CCCeEEEEeccccc
Q ss_pred CCChhhHHHHHHHHHHhCCcEEEEEeCCCCcccccccCCcccccCCCCCcccccHHHHHHHHH
Q 015095 346 LEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKI 408 (413)
Q Consensus 346 l~~~~~~~e~i~~r~~~~~~~vIvvaEGa~~~~~~~~~~~~~~~Da~Gn~~l~~vg~~L~~~I 408 (413)
--+...--..|.+.+++.+.-+|+..+.+.+.+... +|..|+..+
T Consensus 93 ~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~q------------------vg~~lAe~L 137 (260)
T COG2086 93 GADPLATAKALAAAVKKIGPDLVLTGKQAIDGDTGQ------------------VGPLLAELL 137 (260)
T ss_pred CccHHHHHHHHHHHHHhcCCCEEEEecccccCCccc------------------hHHHHHHHh
No 217
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=32.91 E-value=66 Score=31.66 Aligned_cols=49 Identities=12% Similarity=0.246 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeecc
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkT 271 (413)
..++.++.+++.+++++++- |........+.+.++++|++.-.+.-|.|
T Consensus 103 G~e~f~~~~~~aGvdgviip--Dlp~ee~~~~~~~~~~~gl~~i~lv~P~T 151 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVA--DLPLEESGDLVEAAKKHGVKPIFLVAPNA 151 (256)
T ss_pred hHHHHHHHHHHcCCCEEEEC--CCChHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 35788999999999999998 77788888888999999988655666655
No 218
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=32.70 E-value=66 Score=32.55 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=24.5
Q ss_pred hhccCCcEEEEEcCCC-CcchHHHHHhhhcCCccEE
Q 015095 303 VESVENGVGIVKLMGR-YSGFISMYATLASRDVDCC 337 (413)
Q Consensus 303 A~s~~~rv~iVEvMGR-~sG~LA~~aaLA~~~ad~i 337 (413)
.....++|++|=|||- |.||+++.-.--. .+|.+
T Consensus 17 ~r~~gk~Vg~VPTMG~LH~GHlsLVr~A~~-~~d~V 51 (285)
T COG0414 17 LRKEGKRVGLVPTMGNLHEGHLSLVRRAKK-ENDVV 51 (285)
T ss_pred HHHcCCEEEEEcCCcccchHHHHHHHHHhh-cCCeE
Confidence 3344578999999998 8999998765333 45643
No 219
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=32.39 E-value=5.6e+02 Score=27.28 Aligned_cols=152 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHh-CCcEEEEEcCCcchHHHHHHHHHHHHc--CCC-ceeeeeeccccCCCcccccccCchhHHHHHHHHHH
Q 015095 222 TNKIVDNIEDR-GINQVYIIGGDGTQKGAALIYKEVEKR--GLQ-VAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297 (413)
Q Consensus 222 ~~~iv~~l~~~-~Id~LivIGGdgS~~~a~~L~e~~~~~--~~~-i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~ 297 (413)
.+.|.+..+++ +..+++|+++--+-.....+..-+++. .++ ++||.|+ ..+..+..++-||+.|++.+.+.+-
T Consensus 113 ~~aI~e~~~~~p~p~~I~V~stC~~~lIGDDi~~v~~e~~~~~~~~pvv~v~---t~gf~g~s~~~G~~~a~~al~~~l~ 189 (457)
T TIGR01284 113 KRCILEAFREFPEIKRMYTYATCTTALIGDDIDAIAREVMEEIPDVDVFAIN---APGFAGPSQSKGHHVANITWINDKV 189 (457)
T ss_pred HHHHHHHHHhCCCCceEEEECCChHHhhccCHHHHHHHHHHhcCCCeEEEee---CCCcCCcccchHHHHHHHHHHHHHh
Q ss_pred HHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCcEEE-EEeCCCCc
Q 015095 298 AAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVI-VVAEGAGQ 376 (413)
Q Consensus 298 ~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~~~vI-vvaEGa~~ 376 (413)
.-.......++.|-|+ | .|... +.++.|++-+++-|..++ +...+..-
T Consensus 190 ~~~~~~~~~~~~VNii---G-------------------------~~~~~---gd~~el~~lL~~~Gl~v~~~~~g~~s~ 238 (457)
T TIGR01284 190 GTAEPEITTEYDVNLI---G-------------------------EYNIQ---GDLWVLKKYFERMGIQVLSTFTGNGCY 238 (457)
T ss_pred CccCcccCCCCeEEEE---c-------------------------cCCch---hhHHHHHHHHHHcCCeEEEEECCCCCH
Q ss_pred ccccccCCcccccCCCCCcccc-cHHHHHHHHHHhhhC
Q 015095 377 EFVAQSMPAVDEKDASGNRLLL-DIGLWLTQKIKIQHT 413 (413)
Q Consensus 377 ~~~~~~~~~~~~~Da~Gn~~l~-~vg~~L~~~I~~~~~ 413 (413)
+-+.. --.|.-|+.+. ..+.++++.++++|.
T Consensus 239 ~ei~~------~~~A~lniv~~~~~~~~~A~~Le~~~G 270 (457)
T TIGR01284 239 DELRW------MHRAKLNVVRCARSANYIANELEERYG 270 (457)
T ss_pred HHHHh------ccccCEEEEEChHHHHHHHHHHHHHhC
No 220
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=32.13 E-value=4.7e+02 Score=25.23 Aligned_cols=43 Identities=16% Similarity=0.243 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
..+.++.+..++++++++...+... .....+++++.+ ++||.+
T Consensus 46 q~~~i~~l~~~~vdgiii~~~~~~~--~~~~~~~~~~~g--iPvV~~ 88 (303)
T cd01539 46 QNEQIDTALAKGVDLLAVNLVDPTA--AQTVINKAKQKN--IPVIFF 88 (303)
T ss_pred HHHHHHHHHHcCCCEEEEecCchhh--HHHHHHHHHHCC--CCEEEe
Confidence 4467888899999999998866432 122334444445 456644
No 221
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=32.00 E-value=96 Score=31.91 Aligned_cols=105 Identities=11% Similarity=0.074 Sum_probs=53.1
Q ss_pred eEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEccc-ch--hccCCCeeeCChhhHhhhhhcCCceeeecC-CCCc
Q 015095 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGG-YR--GFYSKNTLTLSPKVVNDIHKRGGTILRTSR-GGHD 221 (413)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G-~~--GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR-~~~d 221 (413)
||.| .+||...=+..+ ++++.+.+.....+++|+-++ .+ |+- ...+++.-.+.++.. .|..-+ -..-
T Consensus 7 ki~i-~aGgtsGhi~pa--al~~~l~~~~~~~~~~g~gg~~m~~~g~~--~~~~~~~l~v~G~~~----~l~~~~~~~~~ 77 (385)
T TIGR00215 7 TIAL-VAGEASGDILGA--GLRQQLKEHYPNARFIGVAGPRMAAEGCE--VLYSMEELSVMGLRE----VLGRLGRLLKI 77 (385)
T ss_pred eEEE-EeCCccHHHHHH--HHHHHHHhcCCCcEEEEEccHHHHhCcCc--cccChHHhhhccHHH----HHHHHHHHHHH
Confidence 4443 334444336655 666666654455678887542 11 111 113333333433321 121100 0123
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCC
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQ 262 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~ 262 (413)
+.++.+.+++.+.|.++.+||-+ +.- .++..++..|++
T Consensus 78 ~~~~~~~l~~~kPd~vi~~g~~~-~~~--~~a~aa~~~gip 115 (385)
T TIGR00215 78 RKEVVQLAKQAKPDLLVGIDAPD-FNL--TKELKKKDPGIK 115 (385)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCC-ccH--HHHHHHhhCCCC
Confidence 46888899999999999999844 221 233344444654
No 222
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=31.86 E-value=4.4e+02 Score=26.67 Aligned_cols=150 Identities=19% Similarity=0.193 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHH---HHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHH
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAAL---IYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINA 298 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~---L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~ 298 (413)
.+.+.+.+++++=+.++++++--+-..... +.+++++ ...++|+.+.. +... -++.-|+++|++.+.+.+..
T Consensus 69 ~~~i~~~~~~~~p~~i~v~~tc~~~liGdDi~~v~~~~~~-~~~~~vv~~~~---~gf~-~~~~~G~~~a~~~~~~~~~~ 143 (399)
T cd00316 69 LEAIINELKRYKPKVIFVYTTCTTELIGDDIEAVAKEASK-EIGIPVVPAST---PGFR-GSQSAGYDAAVKAIIDHLVG 143 (399)
T ss_pred HHHHHHHHHHcCCCEEEEecCchhhhhccCHHHHHHHHHH-hhCCceEEeeC---CCCc-ccHHHHHHHHHHHHHHHHhc
Confidence 577788888888899999987655333222 2233322 23455665543 2222 34566788877777664431
Q ss_pred HHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCcEE-EEEeCCCCcc
Q 015095 299 AHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMV-IVVAEGAGQE 377 (413)
Q Consensus 299 i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~~~v-IvvaEGa~~~ 377 (413)
-. ... ....-.+-+|.+.+... +.++.|++-+++-|.-+ .+...|..-+
T Consensus 144 ~~-~~~-------------------------~~~~~~vNlig~~~~~~----~d~~el~~ll~~~G~~v~~~~~~~~s~~ 193 (399)
T cd00316 144 TA-EPE-------------------------ETEPGSVNLIGGYNLGG----GDLRELKRLLEEMGIRVNALFDGGTTVE 193 (399)
T ss_pred cc-CcC-------------------------CCCCCcEEEECCCCCch----hhHHHHHHHHHHcCCcEEEEcCCCCCHH
Confidence 00 000 01123455666666533 24566777777667555 4445445422
Q ss_pred cccccCCcccccCCCCCccccc-HHHHHHHHHHhhh
Q 015095 378 FVAQSMPAVDEKDASGNRLLLD-IGLWLTQKIKIQH 412 (413)
Q Consensus 378 ~~~~~~~~~~~~Da~Gn~~l~~-vg~~L~~~I~~~~ 412 (413)
-+.+ --+|.-|+.+.. .|.++++.++++|
T Consensus 194 ~i~~------~~~A~~nlv~~~~~g~~~a~~l~~~~ 223 (399)
T cd00316 194 ELRE------LGNAKLNLVLCRESGLYLARYLEEKY 223 (399)
T ss_pred HHHh------hccCcEEEEecHhHHHHHHHHHHHHh
Confidence 1211 125666666665 7777887777765
No 223
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=31.84 E-value=3.8e+02 Score=25.87 Aligned_cols=111 Identities=15% Similarity=0.233 Sum_probs=63.4
Q ss_pred CchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCC---CCcHHHHHHHHHHh
Q 015095 156 CPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG---GHDTNKIVDNIEDR 232 (413)
Q Consensus 156 apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~---~~d~~~iv~~l~~~ 232 (413)
.|..-...+.+++++...++..+|.-+.....- -..+.......+...|+.+.+..+. ..|+..++..+++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~g~~~v~iv~~~~~~-----g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~~~~l~~~ 189 (343)
T PF13458_consen 115 SPSDSQQAAALAEYLAKKLGAKKVAIVYPDDPY-----GRSLAEAFRKALEAAGGKVVGEIRYPPGDTDFSALVQQLKSA 189 (343)
T ss_dssp S--HHHHHHHHHHHHHHTTTTSEEEEEEESSHH-----HHHHHHHHHHHHHHTTCEEEEEEEE-TTSSHHHHHHHHHHHT
T ss_pred eccccHHHHHHHHHHHHHcCCcEEEEEecCchh-----hhHHHHHHHHHHhhcCceeccceecccccccchHHHHHHhhc
Confidence 455556677777776554565666665433210 1122223344456678887766553 36789999999999
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCCce-eeeeeccccC
Q 015095 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVA-VAGIPKTIDN 274 (413)
Q Consensus 233 ~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~-vvgIPkTIDN 274 (413)
+.|.+++.++-. .+..+.+.+++.++.-+ +...+-..++
T Consensus 190 ~~d~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (343)
T PF13458_consen 190 GPDVVVLAGDPA---DAAAFLRQLRQLGLKPPRIPLFGTSLDD 229 (343)
T ss_dssp TTSEEEEESTHH---HHHHHHHHHHHTTGCSCTEEEEEGGGSS
T ss_pred CCCEEEEeccch---hHHHHHHHHHhhccccccceeeccccCc
Confidence 999966666322 23345555666776643 4344444444
No 224
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=31.79 E-value=1.3e+02 Score=25.95 Aligned_cols=66 Identities=11% Similarity=0.185 Sum_probs=50.3
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHH
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQR 294 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ 294 (413)
+++++.|.+ .+++.|||-+-..+++++..++...++.-++..|+ +|++.....-.|+-++-+....
T Consensus 43 ~~v~~~ln~----~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~--~~~~~vv~~i~G~~~~~~ll~~ 108 (116)
T cd02991 43 PEVIEYINT----RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLK--DNRMTIVGRLEGLIQPEDLINR 108 (116)
T ss_pred HHHHHHHHc----CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEec--CCceEEEEEEeCCCCHHHHHHH
Confidence 577777764 37999999998888999998888888876676777 4676666678888877665543
No 225
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=31.74 E-value=4.2e+02 Score=25.56 Aligned_cols=105 Identities=17% Similarity=0.118 Sum_probs=60.5
Q ss_pred chhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCe-eeCChhhHhhhhhcCCceeeecCCC---CcHHHHHHHHHHh
Q 015095 157 PGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT-LTLSPKVVNDIHKRGGTILRTSRGG---HDTNKIVDNIEDR 232 (413)
Q Consensus 157 pGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~-~~Lt~~~V~~i~~~GGs~LGTsR~~---~d~~~iv~~l~~~ 232 (413)
+.-....+.+++.+.+ .+..++.-+..- ..+ ...-......+...|+.+....... .+....+..+++.
T Consensus 118 ~~~~~~~~~~~~~l~~-~g~~~v~~l~~~------~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~~ 190 (336)
T cd06326 118 ASYADEIAAIVRHLVT-LGLKRIAVFYQD------DAFGKDGLAGVEKALAARGLKPVATASYERNTADVAAAVAQLAAA 190 (336)
T ss_pred CChHHHHHHHHHHHHH-hCCceEEEEEec------CcchHHHHHHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHhc
Confidence 4455566677776653 344455444221 111 1111112334566777766654432 4777888888888
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeecc
Q 015095 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (413)
Q Consensus 233 ~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkT 271 (413)
+.+++|+.+-.. .+..+.+.+++.|++++++++..+
T Consensus 191 ~~dav~~~~~~~---~a~~~i~~~~~~G~~~~~~~~~~~ 226 (336)
T cd06326 191 RPQAVIMVGAYK---AAAAFIRALRKAGGGAQFYNLSFV 226 (336)
T ss_pred CCCEEEEEcCcH---HHHHHHHHHHhcCCCCcEEEEecc
Confidence 899887766332 234455677788998888776433
No 226
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=31.64 E-value=1.4e+02 Score=32.49 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=31.1
Q ss_pred eeeecCCCCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHH
Q 015095 212 ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAAL 251 (413)
Q Consensus 212 ~LGTsR~~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~ 251 (413)
+||.--...|+.++.+.|++.||+.+.++.|+.++.....
T Consensus 207 liG~~n~~gD~~eik~lLe~~Gl~v~~~~~gg~t~~ei~~ 246 (513)
T TIGR01861 207 YVGEYNIQGDQEVMVDYFQRMGIQVLSTFTGNGSYDDLRG 246 (513)
T ss_pred EeCCCCCccCHHHHHHHHHHCCCeEEEEeCCCCCHHHHHh
Confidence 4443333468899999999999999999999998766443
No 227
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=31.30 E-value=2.4e+02 Score=29.42 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=59.6
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee-eccccCCCcccccccCchhHHHHHHHHHHHH
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI-PKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI-PkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i 299 (413)
..-.+++.+++.--+..++.|.-.|..++..|.+. |.+.--||| |.+|.-==--+-.-.+--||+...+++...
T Consensus 137 ~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~a----GAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~- 211 (346)
T PRK05096 137 HFVQFVAKAREAWPDKTICAGNVVTGEMVEELILS----GADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHG- 211 (346)
T ss_pred HHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHc----CCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHH-
Confidence 35567777887655666666667888888888664 666444555 555543221111122345666665554432
Q ss_pred HHhhhccCCcEEEEEcCC--CCcchHHHHHhhhcCCccEEEcC
Q 015095 300 HVEVESVENGVGIVKLMG--RYSGFISMYATLASRDVDCCLIP 340 (413)
Q Consensus 300 ~~~A~s~~~rv~iVEvMG--R~sG~LA~~aaLA~~~ad~ilIP 340 (413)
.++-||= .| |++|.+|-+ ||. |||.+.+-
T Consensus 212 --------~gvpiIA-DGGi~~sGDI~KA--laa-GAd~VMlG 242 (346)
T PRK05096 212 --------LGGQIVS-DGGCTVPGDVAKA--FGG-GADFVMLG 242 (346)
T ss_pred --------cCCCEEe-cCCcccccHHHHH--HHc-CCCEEEeC
Confidence 2233433 33 688999854 455 68888764
No 228
>PRK04155 chaperone protein HchA; Provisional
Probab=31.29 E-value=5.6e+02 Score=25.78 Aligned_cols=40 Identities=25% Similarity=0.332 Sum_probs=26.7
Q ss_pred HHHHHHHHH--HhCCcEEEEEcCCcchHH------HHHHHHHHHHcCC
Q 015095 222 TNKIVDNIE--DRGINQVYIIGGDGTQKG------AALIYKEVEKRGL 261 (413)
Q Consensus 222 ~~~iv~~l~--~~~Id~LivIGGdgS~~~------a~~L~e~~~~~~~ 261 (413)
++.+.+... ..+.|+||+-||-|.+.. +.+|.+++.+.+-
T Consensus 134 l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K 181 (287)
T PRK04155 134 LADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDR 181 (287)
T ss_pred HHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCC
Confidence 455555544 468999999999998664 4555555555553
No 229
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=31.19 E-value=5.1e+02 Score=26.62 Aligned_cols=31 Identities=26% Similarity=0.248 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCC
Q 015095 308 NGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESP 343 (413)
Q Consensus 308 ~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~p 343 (413)
-.+-|||+-|..-.... ++. .+|++++|..|
T Consensus 149 ~d~viieT~Gv~qs~~~----i~~-~aD~vlvv~~p 179 (332)
T PRK09435 149 YDVILVETVGVGQSETA----VAG-MVDFFLLLQLP 179 (332)
T ss_pred CCEEEEECCCCccchhH----HHH-hCCEEEEEecC
Confidence 35899999998855444 344 58998888654
No 230
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=31.03 E-value=6.7e+02 Score=26.66 Aligned_cols=101 Identities=23% Similarity=0.280 Sum_probs=58.2
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee-eccccCCCcccccccCc--hhHHHHHHHHH
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI-PKTIDNDIAVIDKSFGF--DTAVEEAQRAI 296 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI-PkTIDNDI~gtD~S~GF--dTAv~~~~~~i 296 (413)
....++++.+++.==+..++.|+-.|...|..+.+. |.+.-.+|+ |.||.---..+ ..|. -||+..+.+++
T Consensus 179 ~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a----GaD~I~vG~g~Gs~c~tr~~~--g~g~p~ltai~~v~~~~ 252 (404)
T PRK06843 179 TRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV----GADCLKVGIGPGSICTTRIVA--GVGVPQITAICDVYEVC 252 (404)
T ss_pred hhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc----CCCEEEECCCCCcCCcceeec--CCCCChHHHHHHHHHHH
Confidence 456677888877534677889999999998888653 776544565 55553221111 1233 34555555544
Q ss_pred HHHHHhhhccCCcEEEEEcCCC--CcchHHHHHhhhcCCccEEEc
Q 015095 297 NAAHVEVESVENGVGIVKLMGR--YSGFISMYATLASRDVDCCLI 339 (413)
Q Consensus 297 ~~i~~~A~s~~~rv~iVEvMGR--~sG~LA~~aaLA~~~ad~ilI 339 (413)
+.. .+-|| ..|+ +.|.++ -+|+. |||.+.+
T Consensus 253 ~~~---------~vpVI-AdGGI~~~~Di~--KALal-GA~aVmv 284 (404)
T PRK06843 253 KNT---------NICII-ADGGIRFSGDVV--KAIAA-GADSVMI 284 (404)
T ss_pred hhc---------CCeEE-EeCCCCCHHHHH--HHHHc-CCCEEEE
Confidence 321 13333 4454 566665 45555 6787766
No 231
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=31.01 E-value=39 Score=33.34 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCC
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI 276 (413)
...++++.++..+.|.++-+||--....++..+.. .+++.+.||-+.+||=
T Consensus 63 ~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~-----~~~p~isVPTa~S~DG 113 (250)
T PF13685_consen 63 EVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFE-----LGIPFISVPTAASHDG 113 (250)
T ss_dssp HHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHH-----HT--EEEEES--SSGG
T ss_pred HHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHh-----cCCCEEEecccccccc
Confidence 45677778888899999999997777766666543 3577999999999996
No 232
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=30.94 E-value=6.3e+02 Score=27.38 Aligned_cols=158 Identities=14% Similarity=0.064 Sum_probs=82.6
Q ss_pred cHHHHHHHH-HHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHH
Q 015095 221 DTNKIVDNI-EDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (413)
Q Consensus 221 d~~~iv~~l-~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i 299 (413)
.+.+.++.+ ++++-+.++|+.+--+-..-..+..-+++.+..++||.+.. ++..+. ..-|++.|++.+.+.+..
T Consensus 72 kL~~aI~~~~~~~~P~~I~V~sTC~seiIGdDi~~v~~~~~~~~~Vi~v~t---~gf~~~-~~~G~~~al~~lv~~~~~- 146 (519)
T PRK02910 72 LLKDTLRRADERFQPDLIVVGPSCTAELLQEDLGGLAKHAGLPIPVLPLEL---NAYRVK-ENWAADETFYQLVRALAK- 146 (519)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHhccCHHHHHHHhCCCCCEEEEec---CCcccc-cchHHHHHHHHHHHHHhh-
Confidence 344444444 57789988888765554433333333333344566666543 233332 234777777666553321
Q ss_pred HHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCcEE-EEEeCCCCccc
Q 015095 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMV-IVVAEGAGQEF 378 (413)
Q Consensus 300 ~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~~~v-IvvaEGa~~~~ 378 (413)
.+. .+. +. ......+-+|.+.+..... .+.+..|++-++.-|-.+ ++...|+.-+-
T Consensus 147 --~~~-~~~---------~~----------~~~~~~VNIiG~~~l~f~~-~~D~~EikrlL~~~Gi~vn~v~p~g~s~~d 203 (519)
T PRK02910 147 --KAA-ELP---------QP----------KTARPSVNLLGPTALGFHH-RDDLTELRRLLATLGIDVNVVAPLGASPAD 203 (519)
T ss_pred --hcc-ccc---------cc----------CCCCCeEEEEecCccCCCC-hhHHHHHHHHHHHcCCeEEEEeCCCCCHHH
Confidence 000 000 00 0012456677776533221 256677888888777655 45566665322
Q ss_pred ccccCCcccccCCCCCcccc-cHHHHHHHHHHhhh
Q 015095 379 VAQSMPAVDEKDASGNRLLL-DIGLWLTQKIKIQH 412 (413)
Q Consensus 379 ~~~~~~~~~~~Da~Gn~~l~-~vg~~L~~~I~~~~ 412 (413)
+.. --+|.-|+.+. ..|..+++.++++|
T Consensus 204 i~~------l~~A~~nivl~~~~g~~~A~~Lee~f 232 (519)
T PRK02910 204 LKR------LPAAWFNVVLYREIGESAARYLEREF 232 (519)
T ss_pred HHh------cccCcEEEEeCHHHHHHHHHHHHHHh
Confidence 211 12555566644 47778888887776
No 233
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=30.70 E-value=3.2e+02 Score=25.93 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=25.3
Q ss_pred hhcCCceeeecCCCCcHHHHHHHHHH--hCCcEEEEEcCCcc
Q 015095 206 HKRGGTILRTSRGGHDTNKIVDNIED--RGINQVYIIGGDGT 245 (413)
Q Consensus 206 ~~~GGs~LGTsR~~~d~~~iv~~l~~--~~Id~LivIGGdgS 245 (413)
.+.|||.|++. +.++++++.+.+ .+.+-++|.+|-+.
T Consensus 4 iK~GGs~l~~~---~~~~~~~~~i~~l~~g~~vvvV~Sg~~~ 42 (227)
T cd04234 4 QKFGGTSVASA---ERIKRVADIIKAYEKGNRVVVVVSAMGG 42 (227)
T ss_pred EEECccccCCH---HHHHHHHHHHHHhhcCCCEEEEEcCCCc
Confidence 35688888653 345666666665 68899999977554
No 234
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=30.50 E-value=3.5e+02 Score=26.62 Aligned_cols=64 Identities=16% Similarity=0.111 Sum_probs=46.7
Q ss_pred hhhhh--cCCceeeecCC---C-CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeee
Q 015095 203 NDIHK--RGGTILRTSRG---G-HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (413)
Q Consensus 203 ~~i~~--~GGs~LGTsR~---~-~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIP 269 (413)
..+.. .|+++++..+. . .|+...+..+++-+.|.+++++..+ .+..+.+.+++.|+..++++..
T Consensus 165 ~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~ 234 (342)
T cd06329 165 AMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITGNWGN---DLLLLVKQAADAGLKLPFYTPY 234 (342)
T ss_pred HHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHHcCCCEEEEcccCc---hHHHHHHHHHHcCCCceEEecc
Confidence 44555 78888877554 3 5788889999999999998877443 2445777778888887777643
No 235
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.06 E-value=4.5e+02 Score=24.35 Aligned_cols=91 Identities=9% Similarity=0.086 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccC--chhHHHHHHHHHHHH
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFG--FDTAVEEAQRAINAA 299 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~G--FdTAv~~~~~~i~~i 299 (413)
..+.++.+...++|++++.+-.-.... +.+ ..+.+ ++||.+=.++++. . ..+++ +..|...+++.+-.
T Consensus 44 ~~~~i~~~~~~~~dgiii~~~~~~~~~---~~~-~~~~~--~pvV~i~~~~~~~-~--~~~V~~d~~~~~~~~~~~L~~- 113 (269)
T cd06293 44 ELTYLRWLDTNHVDGLIFVTNRPDDGA---LAK-LINSY--GNIVLVDEDVPGA-K--VPKVFCDNEQGGRLATRHLAR- 113 (269)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCHHH---HHH-HHhcC--CCEEEECCCCCCC-C--CCEEEECCHHHHHHHHHHHHH-
Confidence 457788899999999999874322222 222 22234 5666653333221 1 12344 34455555444422
Q ss_pred HHhhhccCCcEEEEEc-------CCCCcchHHHHH
Q 015095 300 HVEVESVENGVGIVKL-------MGRYSGFISMYA 327 (413)
Q Consensus 300 ~~~A~s~~~rv~iVEv-------MGR~sG~LA~~a 327 (413)
.++ +++.++-. .-|..||..+..
T Consensus 114 ----~G~-~~i~~i~~~~~~~~~~~R~~Gf~~a~~ 143 (269)
T cd06293 114 ----AGH-RRIAFVGGPDALISARERYAGYREALA 143 (269)
T ss_pred ----CCC-ceEEEEecCcccccHHHHHHHHHHHHH
Confidence 243 56777742 235567765443
No 236
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=29.99 E-value=4.4e+02 Score=24.16 Aligned_cols=63 Identities=25% Similarity=0.483 Sum_probs=40.1
Q ss_pred hhhcCCceeeecCC---CCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeec
Q 015095 205 IHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (413)
Q Consensus 205 i~~~GGs~LGTsR~---~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPk 270 (413)
+...|..+.+.... ..+....+..+++.+.+.+++.+..+ .+..+.+.+++.++++++++...
T Consensus 159 ~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~ 224 (298)
T cd06268 159 LKKLGGEVVAEETYPPGATDFSPLIAKLKAAGPDAVFLAGYGG---DAALFLKQAREAGLKVPIVGGDG 224 (298)
T ss_pred HHHcCCEEEEEeccCCCCccHHHHHHHHHhcCCCEEEEccccc---hHHHHHHHHHHcCCCCcEEecCc
Confidence 34556555554332 24677888888888888888776542 23445566777787777776543
No 237
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=29.97 E-value=4.9e+02 Score=27.48 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCcEEEEEcC-------CcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHH
Q 015095 223 NKIVDNIEDRGINQVYIIGG-------DGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQR 294 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGG-------dgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ 294 (413)
+.|.+..++++-+.++|+.+ |+--.-+..+.++..+ ...++|+.|+ -.+..+ .+.-||+.|++.+.+
T Consensus 81 ~~I~~~~~~~~P~~I~V~ttC~~eiIGDDi~~v~~~~~~e~p~-~~~~pvi~v~---tpgf~g-~~~~G~~~a~~al~~ 154 (432)
T TIGR01285 81 EAIDTLCQRNKPKAIGLLSTGLTETRGEDIARVVRQFREKHPQ-HKGTAVVTVN---TPDFKG-SLEDGYAAAVESIIE 154 (432)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccccccCHHHHHHHHHhhccc-ccCCeEEEec---CCCcCC-chHHHHHHHHHHHHH
Confidence 45566667788998888764 4433333333222111 1245666655 123333 345566666666553
No 238
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=29.94 E-value=5.2e+02 Score=25.63 Aligned_cols=129 Identities=15% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccc-------------cccCchhH
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-------------KSFGFDTA 288 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD-------------~S~GFdTA 288 (413)
+++..+.++....=.-|+..|+-+..+..++.+.+.+.|.++-=+||| ..| .++--.+-
T Consensus 4 i~~~f~~~~~~~ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiP--------fSDP~aDGpvIq~a~~rAL~~g~~ 75 (263)
T CHL00200 4 ISNVFEKLDKQCALIPFITAGDPDIVITKKALKILDKKGADIIELGIP--------YSDPLADGPIIQEASNRALKQGIN 75 (263)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCC--------CCCCCccCHHHHHHHHHHHHcCCC
Q ss_pred HHHHHHHHHHHHHhhhccCCcEEEEEcCCCCcchHH------HHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh
Q 015095 289 VEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFIS------MYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE 362 (413)
Q Consensus 289 v~~~~~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA------~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~ 362 (413)
++..-+.+..++.. ...+ +| +|+=+-=..+ +.-+-.+ |+|-++||..|+... +.+.+..++
T Consensus 76 ~~~~~~~~~~~r~~-~~~p----~v-lm~Y~N~i~~~G~e~F~~~~~~a-GvdgviipDLP~ee~------~~~~~~~~~ 142 (263)
T CHL00200 76 LNKILSILSEVNGE-IKAP----IV-IFTYYNPVLHYGINKFIKKISQA-GVKGLIIPDLPYEES------DYLISVCNL 142 (263)
T ss_pred HHHHHHHHHHHhcC-CCCC----EE-EEecccHHHHhCHHHHHHHHHHc-CCeEEEecCCCHHHH------HHHHHHHHH
Q ss_pred CC-cEEEEEe
Q 015095 363 NG-HMVIVVA 371 (413)
Q Consensus 363 ~~-~~vIvva 371 (413)
+| ..+.+++
T Consensus 143 ~gi~~I~lv~ 152 (263)
T CHL00200 143 YNIELILLIA 152 (263)
T ss_pred cCCCEEEEEC
No 239
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=28.83 E-value=30 Score=38.19 Aligned_cols=109 Identities=19% Similarity=0.204 Sum_probs=67.8
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHH-HHHHH-HHcCCCceeeeeeccccCCCccc-ccccCchhHHHHHHHHHH
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAAL-IYKEV-EKRGLQVAVAGIPKTIDNDIAVI-DKSFGFDTAVEEAQRAIN 297 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~-L~e~~-~~~~~~i~vvgIPkTIDNDI~gt-D~S~GFdTAv~~~~~~i~ 297 (413)
.-.++++++.--+-|+++++||||.+..+.- |.+.- -+...++++.-||.==.|++..+ -.+-||+-+++.....|
T Consensus 224 HArei~rt~dl~kyDgIv~vsGDGl~hEVlNGLl~R~D~~~~~klPigiiP~GSGNala~Sv~~~~~~~~~~~a~l~ii- 302 (579)
T KOG1116|consen 224 HAREIVRTLDLGKYDGIVCVSGDGLLHEVLNGLLERPDWEAAVKLPIGIIPCGSGNALAKSVLWTNGPDLPLLATLLII- 302 (579)
T ss_pred HHHHHHHhhhccccceEEEecCCcCHHHhhhccccccchhhHhcCceeEeecCCccHHHHHhhcccCcccchHHHHHHH-
Confidence 4567888888889999999999999765432 21110 01145788999999999999664 34666632333322222
Q ss_pred HHHHhhhccCCcEEEEEcCCCC--cchHHHHHhhhcCCcc
Q 015095 298 AAHVEVESVENGVGIVKLMGRY--SGFISMYATLASRDVD 335 (413)
Q Consensus 298 ~i~~~A~s~~~rv~iVEvMGR~--sG~LA~~aaLA~~~ad 335 (413)
+.- .+.--++.||.+++. -+||.+.-+|-+ ++|
T Consensus 303 --rg~--~t~~dv~~v~~~~~~~~fSfLs~~wGlIA-DiD 337 (579)
T KOG1116|consen 303 --RGR--LTPMDVSVVEYAGKDRHFSFLSAAWGLIA-DVD 337 (579)
T ss_pred --ccC--CCchheeehhhccCcceEEEEeeeeeeEE-ecc
Confidence 111 112248888888876 566666666655 444
No 240
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=28.71 E-value=1.1e+02 Score=28.73 Aligned_cols=59 Identities=24% Similarity=0.226 Sum_probs=36.3
Q ss_pred EEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCC--ChhhHHHHHHHHHHhCCcEEEEEeC
Q 015095 313 VKLMGRYSGFISMYATLASRDVDCCLIPESPFYLE--GPGGLFEFIERQLKENGHMVIVVAE 372 (413)
Q Consensus 313 VEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~--~~~~~~e~i~~r~~~~~~~vIvvaE 372 (413)
-++-|+..=-+++..+|+. .|+++++=|-.-.+| ....+.+.|++..++++..+|+++-
T Consensus 136 ~~LS~G~~qrv~laral~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh 196 (225)
T PRK10247 136 AELSGGEKQRISLIRNLQF-MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTH 196 (225)
T ss_pred ccCCHHHHHHHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 3455555556788999999 799999955433444 2333445555433444667777763
No 241
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=28.67 E-value=4.8e+02 Score=25.53 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=11.9
Q ss_pred cHHHHHHHHHHhCCcEEEE
Q 015095 221 DTNKIVDNIEDRGINQVYI 239 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~Liv 239 (413)
..+.+.+.++++++|.++.
T Consensus 57 ~~~~l~~~~~~~~id~ii~ 75 (326)
T PRK12767 57 YIDRLLDICKKEKIDLLIP 75 (326)
T ss_pred HHHHHHHHHHHhCCCEEEE
Confidence 3456666677777775443
No 242
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=28.50 E-value=51 Score=29.97 Aligned_cols=50 Identities=18% Similarity=0.361 Sum_probs=35.5
Q ss_pred HHhCCcEEEEEcCCcchH---HHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHH
Q 015095 230 EDRGINQVYIIGGDGTQK---GAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQR 294 (413)
Q Consensus 230 ~~~~Id~LivIGGdgS~~---~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ 294 (413)
...+.|++++-||.++.. ....+.+++.+ .++|+.|| |+|++..+...-.
T Consensus 39 ~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~--~~~PilGI-------------C~G~Q~la~~~G~ 91 (192)
T PF00117_consen 39 DLDDYDGIIISGGPGSPYDIEGLIELIREARE--RKIPILGI-------------CLGHQILAHALGG 91 (192)
T ss_dssp HTTTSSEEEEECESSSTTSHHHHHHHHHHHHH--TTSEEEEE-------------THHHHHHHHHTTH
T ss_pred hhcCCCEEEECCcCCccccccccccccccccc--cceEEEEE-------------eehhhhhHHhcCC
Confidence 567899999999999855 33444444444 34678888 9999877666543
No 243
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=28.36 E-value=1.4e+02 Score=26.89 Aligned_cols=42 Identities=17% Similarity=0.355 Sum_probs=28.7
Q ss_pred cHHHHHHHHHHh--CCcEEEEEcCCcchH-HHHHHHHHHHHcCCCc
Q 015095 221 DTNKIVDNIEDR--GINQVYIIGGDGTQK-GAALIYKEVEKRGLQV 263 (413)
Q Consensus 221 d~~~iv~~l~~~--~Id~LivIGGdgS~~-~a~~L~e~~~~~~~~i 263 (413)
+.+++.+.+++. .+.++.+-||. .+. ....|.+.+++.|+++
T Consensus 47 t~eel~~~I~~~~~~~~gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i 91 (147)
T TIGR02826 47 TPEYLTKTLDKYRSLISCVLFLGGE-WNREALLSLLKIFKEKGLKT 91 (147)
T ss_pred CHHHHHHHHHHhCCCCCEEEEechh-cCHHHHHHHHHHHHHCCCCE
Confidence 455666666665 57899999999 543 3557777777777654
No 244
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=28.31 E-value=4e+02 Score=25.46 Aligned_cols=32 Identities=9% Similarity=0.063 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHhhhccCCcEEEEEcCCC
Q 015095 286 DTAVEEAQRAINAAHVEVESVENGVGIVKLMGR 318 (413)
Q Consensus 286 dTAv~~~~~~i~~i~~~A~s~~~rv~iVEvMGR 318 (413)
..+.+.+++.++.+..-|... +=...+|.|+.
T Consensus 125 ~~~~~~~~~~l~~l~~~a~~~-gv~l~lE~~~~ 156 (284)
T PRK13210 125 EETRQRFIEGLAWAVEQAAAA-QVMLAVEIMDT 156 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCEEEEEecCc
Confidence 344555555555555555443 22355777654
No 245
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=28.14 E-value=1.4e+02 Score=29.60 Aligned_cols=93 Identities=22% Similarity=0.290 Sum_probs=55.1
Q ss_pred CCcEEEEEcCCCCcchHHHHHhhhcCCc---cEEEcCCCCCCCCChhhHHHHHHHHHHhC--CcEEEEEeCCCCccccc-
Q 015095 307 ENGVGIVKLMGRYSGFISMYATLASRDV---DCCLIPESPFYLEGPGGLFEFIERQLKEN--GHMVIVVAEGAGQEFVA- 380 (413)
Q Consensus 307 ~~rv~iVEvMGR~sG~LA~~aaLA~~~a---d~ilIPE~pf~l~~~~~~~e~i~~r~~~~--~~~vIvvaEGa~~~~~~- 380 (413)
.+++.++|+ ..||+...||+-...+ .++|+||.|- +-.+.|++++++. ...-|+++.-.+..+-.
T Consensus 89 ~~~~~i~~~---~~G~v~anAGID~SNv~~g~~~LLP~DPd------~SA~~ir~~l~~~~g~~v~VIItDt~gr~~R~G 159 (245)
T PRK13293 89 EAPFILTET---KHGHVCANAGIDESNVPDGDLLLLPENPD------ESAERIREGLEELTGKKVGVIITDTNGRPFRKG 159 (245)
T ss_pred eCCeEEEEe---ccceEEeccccccccCCCCeEEecCCCHH------HHHHHHHHHHHHHHCCCEEEEEEcCCCcccccC
Confidence 345677776 6799988877764333 3889999983 4557777777653 34446777654321110
Q ss_pred --------ccC----CcccccCCCCCcccccHHHHHHHHHH
Q 015095 381 --------QSM----PAVDEKDASGNRLLLDIGLWLTQKIK 409 (413)
Q Consensus 381 --------~~~----~~~~~~Da~Gn~~l~~vg~~L~~~I~ 409 (413)
..+ .-.+++|.+|+... -.-..++|+|.
T Consensus 160 ~t~vAIG~aGi~~l~d~rG~~D~~G~~L~-vT~~avaDelA 199 (245)
T PRK13293 160 QRGVAIGVAGIPALWDWRGEKDLFGRELE-TTEVAVADELA 199 (245)
T ss_pred CcceeeeccCchHHHhhcCCcCCCCCeee-chHHHHHHHHH
Confidence 000 01346799999764 33345666654
No 246
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=28.12 E-value=1.1e+02 Score=28.21 Aligned_cols=46 Identities=15% Similarity=0.322 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHH
Q 015095 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (413)
Q Consensus 233 ~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~ 291 (413)
..|+|++.||-++-.....+.+.+++..-.+|+.|| |+|++--+..
T Consensus 43 ~~d~iIi~gGp~~~~~~~~~~~~i~~~~~~~PiLGI-------------ClG~Qlla~~ 88 (190)
T PRK06895 43 NFSHILISPGPDVPRAYPQLFAMLERYHQHKSILGV-------------CLGHQTLCEF 88 (190)
T ss_pred cCCEEEECCCCCChHHhhHHHHHHHHhcCCCCEEEE-------------cHHHHHHHHH
Confidence 478999999999543333344444333335677777 9998844443
No 247
>PRK05660 HemN family oxidoreductase; Provisional
Probab=27.74 E-value=53 Score=33.91 Aligned_cols=65 Identities=22% Similarity=0.385 Sum_probs=45.2
Q ss_pred hCCcEEEEEcCCcch---HHHHHHHHHHHHc-----CCCceeeeeeccccCCC-------cccccccCchhHHHHHHHHH
Q 015095 232 RGINQVYIIGGDGTQ---KGAALIYKEVEKR-----GLQVAVAGIPKTIDNDI-------AVIDKSFGFDTAVEEAQRAI 296 (413)
Q Consensus 232 ~~Id~LivIGGdgS~---~~a~~L~e~~~~~-----~~~i~vvgIPkTIDNDI-------~gtD~S~GFdTAv~~~~~~i 296 (413)
..++.+++-||.-|+ .....|.+.++++ +..+.+-.=|.|++.+. ..+-.|+|.+|.-...-+.+
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l 136 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRL 136 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHh
Confidence 579999999999997 3444555555552 34677778899998765 23456999988876554433
No 248
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=27.73 E-value=1.2e+02 Score=27.72 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=31.9
Q ss_pred HHHhCCcEEEEEcCCcchHH---HHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHH
Q 015095 229 IEDRGINQVYIIGGDGTQKG---AALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEA 292 (413)
Q Consensus 229 l~~~~Id~LivIGGdgS~~~---a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~ 292 (413)
+...++|+|++.||.++... ...+.+++.+++ ++|.|| |.|++......
T Consensus 35 ~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~--~PvlGI-------------C~G~Q~l~~~~ 86 (178)
T cd01744 35 ILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKK--IPIFGI-------------CLGHQLLALAL 86 (178)
T ss_pred HhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCC--CCEEEE-------------CHHHHHHHHHc
Confidence 34568999999999876433 333444444433 668887 88887665554
No 249
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=27.59 E-value=6.3e+02 Score=25.26 Aligned_cols=104 Identities=15% Similarity=0.064 Sum_probs=61.7
Q ss_pred chhHHHHHHHHHHHhHhC----CCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC---CcHHHHHHHH
Q 015095 157 PGINTVIREIVCGLSYMY----GVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG---HDTNKIVDNI 229 (413)
Q Consensus 157 pGmNavIr~iv~~l~~~~----~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~---~d~~~iv~~l 229 (413)
|......+.+++.+.+.. +..+|.-+..-+. +- ..+...-...+...|+.+.+..+.. .|+...+..+
T Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~~~~kvaiv~~~~~--~g---~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i 191 (351)
T cd06334 117 PTYSDQARALVQYIAEQEGGKLKGKKIALVYHDSP--FG---KEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQI 191 (351)
T ss_pred CCHHHHHHHHHHHHHHhcccCCCCCeEEEEeCCCc--cc---hhhHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHH
Confidence 334445566666655433 3456666654221 10 1111112233456677777777653 5888999999
Q ss_pred HHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 230 EDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 230 ~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
+.-+-|+|++.+-.. .+..+.+.+++.|++.++++.
T Consensus 192 ~~~~pd~V~~~~~~~---~~~~~~~~~~~~G~~~~~~~~ 227 (351)
T cd06334 192 RRSGPDYVILWGWGV---MNPVAIKEAKRVGLDDKFIGN 227 (351)
T ss_pred HHcCCCEEEEecccc---hHHHHHHHHHHcCCCceEEEe
Confidence 999999998765443 234456667777887666653
No 250
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=27.55 E-value=1e+02 Score=29.33 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=29.2
Q ss_pred hCCcEEEEEcCCcchHHHH---HHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHH
Q 015095 232 RGINQVYIIGGDGTQKGAA---LIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEA 292 (413)
Q Consensus 232 ~~Id~LivIGGdgS~~~a~---~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~ 292 (413)
.++|+|++-||.++..... .+.+++.+ .++||.|| |+|++..+...
T Consensus 45 ~~~dgliisGGp~~~~~~~~~~~~i~~~~~--~~~PiLGI-------------C~G~Qlla~a~ 93 (214)
T PRK07765 45 AQFDGVLLSPGPGTPERAGASIDMVRACAA--AGTPLLGV-------------CLGHQAIGVAF 93 (214)
T ss_pred cCCCEEEECCCCCChhhcchHHHHHHHHHh--CCCCEEEE-------------ccCHHHHHHHh
Confidence 3699999999998754322 23333322 24667777 99988655543
No 251
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=27.42 E-value=1.8e+02 Score=29.02 Aligned_cols=63 Identities=13% Similarity=0.237 Sum_probs=45.9
Q ss_pred hhhhcCCceeeecCC---CCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeee
Q 015095 204 DIHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (413)
Q Consensus 204 ~i~~~GGs~LGTsR~---~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIP 269 (413)
.|...|+.+.+..+. ..|+...+..++.-+-|.++++ +.+.- +..+.+.+++.|++.+++++.
T Consensus 171 ~~~~~G~~vv~~~~~~~~~~D~~~~v~~ik~a~pD~v~~~-~~~~~--~~~~~~~~~~~G~~~~~~~~~ 236 (357)
T cd06337 171 ALADAGYKLVDPGRFEPGTDDFSSQINAFKREGVDIVTGF-AIPPD--FATFWRQAAQAGFKPKIVTIA 236 (357)
T ss_pred HHHhCCcEEecccccCCCCCcHHHHHHHHHhcCCCEEEeC-CCccH--HHHHHHHHHHCCCCCCeEEEe
Confidence 345578888877765 3688999999999999997654 44442 444667777789887777654
No 252
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=27.28 E-value=5.4e+02 Score=26.84 Aligned_cols=70 Identities=13% Similarity=0.085 Sum_probs=39.2
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHH---HHHHHHHHHHc---CCCceeeeeeccccCCCcccccccCchhHHHHHHHHH
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKG---AALIYKEVEKR---GLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAI 296 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~---a~~L~e~~~~~---~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i 296 (413)
+.|.+.+++++-+.++|+..--+-.. ...+.++++++ ...++|+.++. .+..+ .+.-||+.|++.+.+.+
T Consensus 71 ~~i~~~~~~~~p~~I~v~~tC~~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~t---pgf~g-~~~~G~~~a~~al~~~~ 146 (428)
T cd01965 71 EALKNLLSRYKPDVIGVLTTCLTETIGDDVAGFIKEFRAEGPEPADFPVVYAST---PSFKG-SHETGYDNAVKAIIEQL 146 (428)
T ss_pred HHHHHHHHhcCCCEEEEECCcchhhcCCCHHHHHHHHHhhccCCCCCeEEEeeC---CCCCC-cHHHHHHHHHHHHHHHH
Confidence 45556667789999998875444222 22233344332 24566666643 22333 34578888877766543
No 253
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=27.28 E-value=3.4e+02 Score=26.20 Aligned_cols=116 Identities=20% Similarity=0.226 Sum_probs=62.8
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcC-CCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHHHHhhhccCCcEE
Q 015095 233 GINQVYIIGGDGTQKGAALIYKEVEKRG-LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVG 311 (413)
Q Consensus 233 ~Id~LivIGGdgS~~~a~~L~e~~~~~~-~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i~~~A~s~~~rv~ 311 (413)
+-..|+++||-+.- .+.+.+++.. ..+.++|.+. .+.+-..+. -.+|++ ....+ ....+ .+.
T Consensus 192 ~~~iLv~~gg~~~~----~~~~~l~~~~~~~~~v~g~~~-~~~~~~ni~-~~~~~~--~~~~~-------~m~~a--d~v 254 (318)
T PF13528_consen 192 EPKILVYFGGGGPG----DLIEALKALPDYQFIVFGPNA-ADPRPGNIH-VRPFST--PDFAE-------LMAAA--DLV 254 (318)
T ss_pred CCEEEEEeCCCcHH----HHHHHHHhCCCCeEEEEcCCc-ccccCCCEE-EeecCh--HHHHH-------HHHhC--CEE
Confidence 44578888888766 4445555443 5555665553 333322211 222221 01111 11111 122
Q ss_pred EEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCcEEEEEeCCCCcc
Q 015095 312 IVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQE 377 (413)
Q Consensus 312 iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~~~vIvvaEGa~~~ 377 (413)
|- ++||-+++=+++. +.-.++||...+..+ ...-+++++.|.++++-.|.....
T Consensus 255 Is-----~~G~~t~~Ea~~~-g~P~l~ip~~~~~EQ------~~~a~~l~~~G~~~~~~~~~~~~~ 308 (318)
T PF13528_consen 255 IS-----KGGYTTISEALAL-GKPALVIPRPGQDEQ------EYNARKLEELGLGIVLSQEDLTPE 308 (318)
T ss_pred EE-----CCCHHHHHHHHHc-CCCEEEEeCCCCchH------HHHHHHHHHCCCeEEcccccCCHH
Confidence 22 4799988888888 677899998764322 334556777788887766665443
No 254
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=27.04 E-value=1.6e+02 Score=29.15 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=39.2
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeec
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPk 270 (413)
..++.++.+++.+++++++. |=.+..+..+.+.++++|+..-...-|.
T Consensus 105 G~e~f~~~~~~aGvdGviip--DLp~ee~~~~~~~~~~~gl~~I~lvap~ 152 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIP--DLPPEEAEELRAAAKKHGLDLIFLVAPT 152 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 47899999999999999995 6678888899999999998754444554
No 255
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=26.96 E-value=5.7e+02 Score=24.53 Aligned_cols=103 Identities=18% Similarity=0.337 Sum_probs=56.7
Q ss_pred EccCCCCchhHHH-HHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC---------
Q 015095 150 VTCGGLCPGINTV-IREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG--------- 219 (413)
Q Consensus 150 vtsGG~apGmNav-Ir~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~--------- 219 (413)
+.||+ +-|+..+ .+++.. .++..|.-+-.|..-.+.. -++...+.+...||.+| | .+.
T Consensus 77 IVSG~-A~GiD~~ah~~al~-----~~g~tIaVl~~gld~~yp~----~n~~l~~~i~~~gglli-S-e~p~~~~~~~~~ 144 (220)
T TIGR00732 77 IVSGL-ALGIDGIAHKAALK-----VNGRTIAVLGTGLDQIYPR----QNSKLAAKIAENGGLLL-S-EYPPDTKPIKYN 144 (220)
T ss_pred EEcCc-hhhHHHHHHHHHHH-----cCCCEEEEECCCCccCCch----hhHHHHHHHHHcCCEEE-E-ecCCCCCCCccc
Confidence 34454 4555543 333321 3455555555665433322 24555667777788766 2 221
Q ss_pred -CcHHHHHHHHHHhCCcEEEEEcC---CcchHHHHHHHHHHHHcCCCceeeeeeccccC
Q 015095 220 -HDTNKIVDNIEDRGINQVYIIGG---DGTQKGAALIYKEVEKRGLQVAVAGIPKTIDN 274 (413)
Q Consensus 220 -~d~~~iv~~l~~~~Id~LivIGG---dgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDN 274 (413)
..+.+++..|- +++|+++. .||+.+|.. +.++| -+|.++|..+++
T Consensus 145 f~~RNriia~ls----~~vivve~~~~sGtl~ta~~----A~~~g--r~v~~~pg~~~~ 193 (220)
T TIGR00732 145 FPKRNRIISGLS----RAVLVVEAPLKSGALITARY----ALEQG--REVFAYPGDLNS 193 (220)
T ss_pred HHHHHHHHHHhc----CEEEEEECCCCCchHHHHHH----HHHhC--CcEEEEcCCCCC
Confidence 12445555443 67888887 466665553 33345 468899988875
No 256
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=26.95 E-value=82 Score=29.19 Aligned_cols=77 Identities=12% Similarity=0.189 Sum_probs=44.4
Q ss_pred CChhhHhhhhhcCCceeeecCCCC-cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCC
Q 015095 197 LSPKVVNDIHKRGGTILRTSRGGH-DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (413)
Q Consensus 197 Lt~~~V~~i~~~GGs~LGTsR~~~-d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDND 275 (413)
.|+..++.+...| ..+-.-|... +. +.+++.+.|+|++-||-|+-..+....+.+++...++|+.||
T Consensus 11 ft~nl~~~l~~~g-~~v~v~~~~~~~~----~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGI------- 78 (187)
T PRK08007 11 FTWNLYQYFCELG-ADVLVKRNDALTL----ADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGV------- 78 (187)
T ss_pred cHHHHHHHHHHCC-CcEEEEeCCCCCH----HHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEE-------
Confidence 3444555555553 3333334332 33 344567899999999999876543333333333335677877
Q ss_pred CcccccccCchhHHHH
Q 015095 276 IAVIDKSFGFDTAVEE 291 (413)
Q Consensus 276 I~gtD~S~GFdTAv~~ 291 (413)
|+|++.-+..
T Consensus 79 ------ClG~Q~la~a 88 (187)
T PRK08007 79 ------CLGHQAMAQA 88 (187)
T ss_pred ------CHHHHHHHHH
Confidence 8997754443
No 257
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=26.62 E-value=1.3e+02 Score=24.25 Aligned_cols=38 Identities=26% Similarity=0.464 Sum_probs=28.5
Q ss_pred cCCceeeecCCCCcHHHHHHHHHHhCCcEEEEEcCCcchH
Q 015095 208 RGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQK 247 (413)
Q Consensus 208 ~GGs~LGTsR~~~d~~~iv~~l~~~~Id~LivIGGdgS~~ 247 (413)
.++-+|=+. . .-.+.+.+.|+++++..+++|||.++..
T Consensus 49 ~~~PIll~~-~-~l~~~~~~~l~~~~~~~v~iiGg~~~is 86 (92)
T PF04122_consen 49 NNAPILLVN-N-SLPSSVKAFLKSLNIKKVYIIGGEGAIS 86 (92)
T ss_pred cCCeEEEEC-C-CCCHHHHHHHHHcCCCEEEEECCCCccC
Confidence 344566565 3 2337888889999999999999998764
No 258
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=26.61 E-value=1.2e+02 Score=28.39 Aligned_cols=58 Identities=14% Similarity=0.183 Sum_probs=37.5
Q ss_pred EcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCC--ChhhHHHHHHHHHHhCCcEEEEEeC
Q 015095 314 KLMGRYSGFISMYATLASRDVDCCLIPESPFYLE--GPGGLFEFIERQLKENGHMVIVVAE 372 (413)
Q Consensus 314 EvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~--~~~~~~e~i~~r~~~~~~~vIvvaE 372 (413)
++-|+.-=-+++..+++. +|+++++=|-.-.+| ..+.+.+.|++..++++.++|+++-
T Consensus 129 ~LS~G~~qrv~laral~~-~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH 188 (232)
T PRK10771 129 QLSGGQRQRVALARCLVR-EQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSH 188 (232)
T ss_pred cCCHHHHHHHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 555555667888899999 799999955433444 2334556666544444667777763
No 259
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=26.46 E-value=1.2e+02 Score=28.41 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=31.4
Q ss_pred hHHHHHhhhcCCccEEEcCCCCCCCC--ChhhHHHHHHHHHHhCCcEEEEEeCC
Q 015095 322 FISMYATLASRDVDCCLIPESPFYLE--GPGGLFEFIERQLKENGHMVIVVAEG 373 (413)
Q Consensus 322 ~LA~~aaLA~~~ad~ilIPE~pf~l~--~~~~~~e~i~~r~~~~~~~vIvvaEG 373 (413)
-+++..+|+. +|+++++=|-.-.+| ....+.+.|++..++++..+|+++--
T Consensus 153 rl~la~al~~-~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~ 205 (233)
T PRK11629 153 RVAIARALVN-NPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205 (233)
T ss_pred HHHHHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4678888888 799999966433444 23344555544333346677777643
No 260
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=26.29 E-value=99 Score=33.09 Aligned_cols=49 Identities=22% Similarity=0.422 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeecccc
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTID 273 (413)
.++.++.+.... |.+||.|||||..... .--+++|+-..+|--+|---|
T Consensus 106 ak~l~e~~~t~~-Dii~VaGGDGT~~eVV--TGi~Rrr~~~~pv~~~P~G~~ 154 (535)
T KOG4435|consen 106 AKALAEAVDTQE-DIIYVAGGDGTIGEVV--TGIFRRRKAQLPVGFYPGGYD 154 (535)
T ss_pred HHHHHHHhccCC-CeEEEecCCCcHHHhh--HHHHhcccccCceeeccCccc
Confidence 556666666555 9999999999987643 223444454566666665444
No 261
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=26.26 E-value=2.4e+02 Score=27.43 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=42.7
Q ss_pred hhhhhcCCceeeecCC---CCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeee
Q 015095 203 NDIHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 267 (413)
Q Consensus 203 ~~i~~~GGs~LGTsR~---~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvg 267 (413)
..+...|+.+.+..+. ..|+...+..+++.+-|.+++.+... .+..+.+.+++.|++.++++
T Consensus 159 ~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~---~~~~~~~~~~~~G~~~~~~~ 223 (312)
T cd06346 159 KAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIGYPE---TGSGILRSAYEQGLFDKFLL 223 (312)
T ss_pred HHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecccc---hHHHHHHHHHHcCCCCceEe
Confidence 3455678887776554 35788999999999999998775433 33445566666787655554
No 262
>PRK15447 putative protease; Provisional
Probab=26.20 E-value=1.1e+02 Score=30.78 Aligned_cols=46 Identities=22% Similarity=0.305 Sum_probs=27.4
Q ss_pred hHHHHHhhhcCCccEEEcCCCCCCCC---ChhhHHHHHHHHHHhCCcEEE
Q 015095 322 FISMYATLASRDVDCCLIPESPFYLE---GPGGLFEFIERQLKENGHMVI 368 (413)
Q Consensus 322 ~LA~~aaLA~~~ad~ilIPE~pf~l~---~~~~~~e~i~~r~~~~~~~vI 368 (413)
..+.+++++..+||.||++|..|.+. ..+++.+.+ ++.++.|.-+.
T Consensus 17 ~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v-~~~~~~gkkvy 65 (301)
T PRK15447 17 VRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELA-ERLAAAGKEVV 65 (301)
T ss_pred HHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHH-HHHHHcCCEEE
Confidence 34678888765899999999875432 111333333 34555554443
No 263
>PRK05261 putative phosphoketolase; Provisional
Probab=26.12 E-value=1.1e+03 Score=27.47 Aligned_cols=50 Identities=20% Similarity=0.328 Sum_probs=31.9
Q ss_pred cCCCCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcE--EEEEcccchhcc
Q 015095 140 FKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDE--ILGIEGGYRGFY 190 (413)
Q Consensus 140 ~~~~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~--V~Gi~~G~~GL~ 190 (413)
+.++.+|--.+-=-|-|||+|-+-..+.+-.. .|.-.. |.|-=+|-.+++
T Consensus 39 l~~~~~K~r~~GHwGt~pgln~vyahln~li~-~~~~~~~~V~g~GHg~p~~~ 90 (785)
T PRK05261 39 LKPEHVKPRLLGHWGTTPGLNFIYAHLNRLIR-KYDLNMIYITGPGHGGPAMV 90 (785)
T ss_pred CCHHHCCcccCCCCCCcHHHHHHHHHHHHHHh-hcCCceEEEeCCCccHHHHH
Confidence 34555666666667889999988666666443 454443 444446777775
No 264
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=26.11 E-value=2.4e+02 Score=28.45 Aligned_cols=52 Identities=13% Similarity=0.347 Sum_probs=36.1
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeecccc
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTID 273 (413)
.++++.+..|.+ .+|.++||||-.|-.+ .+|++-+++.+.+.-.|-=+.=|+
T Consensus 196 ~~RQ~a~~~la~-~vD~miVVGg~nSsNT-~rL~ei~~~~~~~t~~Ie~~~el~ 247 (280)
T TIGR00216 196 QNRQDAVKELAP-EVDLMIVIGGKNSSNT-TRLYEIAEEHGPPSYLIETAEELP 247 (280)
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCchH-HHHHHHHHHhCCCEEEECChHHCC
Confidence 456777777754 5999999999999876 458888887775544444344343
No 265
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=26.06 E-value=6.1e+02 Score=24.54 Aligned_cols=43 Identities=21% Similarity=0.375 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
..++++.+...++|++++.+-+... .....+++++.+ +|||.+
T Consensus 43 q~~~i~~l~~~~vDgIIi~~~~~~~--~~~~l~~~~~~~--iPvV~~ 85 (302)
T TIGR02634 43 QISQIENLIARGVDVLVIIPQNGQV--LSNAVQEAKDEG--IKVVAY 85 (302)
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhH--HHHHHHHHHHCC--CeEEEe
Confidence 4578999999999999998765432 122334455555 567654
No 266
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=25.35 E-value=94 Score=30.65 Aligned_cols=56 Identities=20% Similarity=0.379 Sum_probs=40.1
Q ss_pred ecCCC--CcHHHHHHHHHHhCCcEEEEEcCCcc----------hHHHHHHHHHHHHc--CCCceeeeeec
Q 015095 215 TSRGG--HDTNKIVDNIEDRGINQVYIIGGDGT----------QKGAALIYKEVEKR--GLQVAVAGIPK 270 (413)
Q Consensus 215 TsR~~--~d~~~iv~~l~~~~Id~LivIGGdgS----------~~~a~~L~e~~~~~--~~~i~vvgIPk 270 (413)
|+|.. ..++..+..+...||+.+++++||-. +..|..|-+.+++. .+.|-+++.|-
T Consensus 66 t~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Pe 135 (272)
T TIGR00676 66 TCIGATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPE 135 (272)
T ss_pred eecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 45542 35777888899999999999999976 23466666666654 46677777764
No 267
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=25.25 E-value=3.5e+02 Score=22.59 Aligned_cols=24 Identities=13% Similarity=0.534 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhCC-cEEEEEcCCcc
Q 015095 222 TNKIVDNIEDRGI-NQVYIIGGDGT 245 (413)
Q Consensus 222 ~~~iv~~l~~~~I-d~LivIGGdgS 245 (413)
..++++.+++.+- +..+++||...
T Consensus 67 ~~~~i~~l~~~~~~~~~i~vGG~~~ 91 (119)
T cd02067 67 MKEVIEELKEAGLDDIPVLVGGAIV 91 (119)
T ss_pred HHHHHHHHHHcCCCCCeEEEECCCC
Confidence 4555555555555 55556666543
No 268
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=25.16 E-value=1.2e+02 Score=27.93 Aligned_cols=58 Identities=21% Similarity=0.222 Sum_probs=35.2
Q ss_pred EEcCCCCcchHHHHHhhhcCC--ccEEEcCCCCCCCC--ChhhHHHHHHHHHHhCCcEEEEEeC
Q 015095 313 VKLMGRYSGFISMYATLASRD--VDCCLIPESPFYLE--GPGGLFEFIERQLKENGHMVIVVAE 372 (413)
Q Consensus 313 VEvMGR~sG~LA~~aaLA~~~--ad~ilIPE~pf~l~--~~~~~~e~i~~r~~~~~~~vIvvaE 372 (413)
-++.|...=-+++..+|+. + ++++++=|---.++ ..+.+.+.|++. .+.+.++|+++-
T Consensus 86 ~~LSgGq~qrl~laral~~-~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~-~~~g~tvIivSH 147 (176)
T cd03238 86 STLSGGELQRVKLASELFS-EPPGTLFILDEPSTGLHQQDINQLLEVIKGL-IDLGNTVILIEH 147 (176)
T ss_pred CcCCHHHHHHHHHHHHHhh-CCCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhCCCEEEEEeC
Confidence 3555555566788888888 8 99999844333333 333455555543 335667766663
No 269
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.01 E-value=5.2e+02 Score=24.46 Aligned_cols=65 Identities=11% Similarity=-0.009 Sum_probs=43.1
Q ss_pred eEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeee-cCCCCcHHH
Q 015095 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRT-SRGGHDTNK 224 (413)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGT-sR~~~d~~~ 224 (413)
+||++...-..|....++.++...+.+ ++ ..+ ++.+ ........+
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-y~~--------------------------------~~~~~~~~~~~~~~ 47 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKA-IG-WNL--------------------------------RILDGRGSEAGQAA 47 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHH-cC-cEE--------------------------------EEECCCCCHHHHHH
Confidence 678888766778888888888877753 22 121 1111 111223457
Q ss_pred HHHHHHHhCCcEEEEEcCCc
Q 015095 225 IVDNIEDRGINQVYIIGGDG 244 (413)
Q Consensus 225 iv~~l~~~~Id~LivIGGdg 244 (413)
+++.+..+++|++++.+.+.
T Consensus 48 ~i~~l~~~~vdgiil~~~~~ 67 (280)
T cd06315 48 ALNQAIALKPDGIVLGGVDA 67 (280)
T ss_pred HHHHHHHcCCCEEEEcCCCH
Confidence 88889999999999998653
No 270
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=24.96 E-value=74 Score=27.24 Aligned_cols=90 Identities=20% Similarity=0.283 Sum_probs=53.0
Q ss_pred eeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecC--CCCcH
Q 015095 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSR--GGHDT 222 (413)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR--~~~d~ 222 (413)
+||.|+-+||-- + ++...+.+...+.+||.+.. =-|.. -++.+. ...|.
T Consensus 1 MkVLviGsGgRE---H----Aia~~l~~s~~v~~v~~aPG-N~G~~---------------------~~~~~~~~~~~d~ 51 (100)
T PF02844_consen 1 MKVLVIGSGGRE---H----AIAWKLSQSPSVEEVYVAPG-NPGTA---------------------ELGKNVPIDITDP 51 (100)
T ss_dssp EEEEEEESSHHH---H----HHHHHHTTCTTEEEEEEEE---TTGG---------------------GTSEEE-S-TT-H
T ss_pred CEEEEECCCHHH---H----HHHHHHhcCCCCCEEEEeCC-CHHHH---------------------hhceecCCCCCCH
Confidence 578888888643 2 33334444445567877653 11211 122222 24678
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
+.+++..++++|| |++||-..-+. .=|++.+++.|+ +|+|=
T Consensus 52 ~~l~~~a~~~~id-lvvvGPE~pL~--~Gl~D~l~~~gi--~vfGP 92 (100)
T PF02844_consen 52 EELADFAKENKID-LVVVGPEAPLV--AGLADALRAAGI--PVFGP 92 (100)
T ss_dssp HHHHHHHHHTTES-EEEESSHHHHH--TTHHHHHHHTT---CEES-
T ss_pred HHHHHHHHHcCCC-EEEECChHHHH--HHHHHHHHHCCC--cEECc
Confidence 9999999999999 66777766553 347788888774 46653
No 271
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=24.80 E-value=2.1e+02 Score=28.90 Aligned_cols=51 Identities=14% Similarity=0.246 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeecccc
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTID 273 (413)
++++.+..|. ..+|.++||||..|-.+. +|++-+++.+.+.-.|-=|.=|+
T Consensus 198 ~RQ~a~~~La-~~vD~miVVGg~~SsNT~-rL~eia~~~~~~t~~Ie~~~el~ 248 (281)
T PRK12360 198 KRQESAKELS-KEVDVMIVIGGKHSSNTQ-KLVKICEKNCPNTFHIETADELD 248 (281)
T ss_pred hHHHHHHHHH-HhCCEEEEecCCCCccHH-HHHHHHHHHCCCEEEECChHHCC
Confidence 4667777774 469999999999998764 47788877765554555555454
No 272
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers.
Probab=24.75 E-value=54 Score=31.26 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHH
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAAL 251 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~ 251 (413)
....++.|+++||| |++||+.|+..|.+
T Consensus 8 ~p~~~~vf~~~gid--~cc~g~~~l~~a~~ 35 (216)
T TIGR03652 8 IPRAARIFRKYGID--FCCGGNVSLAEACK 35 (216)
T ss_pred CccHHHHHHHcCCC--ccCCCcchHHHHHH
Confidence 34677899999999 99999877765443
No 273
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=24.56 E-value=1.8e+02 Score=30.76 Aligned_cols=58 Identities=22% Similarity=0.430 Sum_probs=43.5
Q ss_pred hcCCceeeecCC--CCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc-C--CCceeeeeecc
Q 015095 207 KRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-G--LQVAVAGIPKT 271 (413)
Q Consensus 207 ~~GGs~LGTsR~--~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~-~--~~i~vvgIPkT 271 (413)
..+|.++-|+-. ++.++.++..++++++|.++++|-. +|+..+++. + -.+.|+.+||+
T Consensus 211 r~sG~iInT~g~i~~egy~~llhai~~f~v~vviVLg~E-------rLy~~lkk~~~~~~~v~vv~lpKs 273 (415)
T KOG2749|consen 211 RVSGCIINTCGWIEGEGYAALLHAIKAFEVDVVIVLGQE-------RLYSSLKKDLPPKKNVRVVKLPKS 273 (415)
T ss_pred cccceEEeccceeccccHHHHHHHHHHcCccEEEEeccH-------HHHHHHHhhccccccceEEEecCC
Confidence 457778877654 5679999999999999999999865 455544432 2 45789999993
No 274
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=24.48 E-value=1.4e+02 Score=32.33 Aligned_cols=58 Identities=24% Similarity=0.363 Sum_probs=40.9
Q ss_pred CCcEEEEEcCCcc--hHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHHHHhhhcc
Q 015095 233 GINQVYIIGGDGT--QKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESV 306 (413)
Q Consensus 233 ~Id~LivIGGdgS--~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i~~~A~s~ 306 (413)
.-|++++-||+|+ ..+...-++++++.+ +|..|| |+|.+-|+=+.++.+-.+. +|.|+
T Consensus 363 ~adGilvPGGFG~RGveG~i~Aak~ARen~--iP~LGi-------------CLGmQ~AvIEfaRnvLg~~-dAnSt 422 (585)
T KOG2387|consen 363 SADGILVPGGFGDRGVEGKILAAKWARENK--IPFLGI-------------CLGMQLAVIEFARNVLGLK-DANST 422 (585)
T ss_pred cCCeEEeCCcccccchhHHHHHHHHHHhcC--CCeEee-------------ehhhhHHHHHHHHHhhCCC-CCCcc
Confidence 4899999999997 444444556665543 556666 9999999988877765544 45554
No 275
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=24.47 E-value=85 Score=29.41 Aligned_cols=70 Identities=14% Similarity=0.223 Sum_probs=41.1
Q ss_pred hhhhhcCCceeeecCCCC-cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCccccc
Q 015095 203 NDIHKRGGTILRTSRGGH-DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDK 281 (413)
Q Consensus 203 ~~i~~~GGs~LGTsR~~~-d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~ 281 (413)
+.+... |.-+-..|..+ .. +.++..+.|++++-||-++-.......+..++..-++||.||
T Consensus 17 ~~l~~~-g~~v~v~~~~~~~~----~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLGI------------- 78 (195)
T PRK07649 17 QFLGEL-GQELVVKRNDEVTI----SDIENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGV------------- 78 (195)
T ss_pred HHHHHC-CCcEEEEeCCCCCH----HHHhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCCEEEE-------------
Confidence 333344 45555556542 23 334567899999999999865543333333322334667777
Q ss_pred ccCchhHHH
Q 015095 282 SFGFDTAVE 290 (413)
Q Consensus 282 S~GFdTAv~ 290 (413)
|+|++--+.
T Consensus 79 ClG~Qlla~ 87 (195)
T PRK07649 79 CLGHQSIAQ 87 (195)
T ss_pred cHHHHHHHH
Confidence 899876554
No 276
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=24.40 E-value=2.3e+02 Score=27.22 Aligned_cols=58 Identities=21% Similarity=0.341 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCc--chHHHHHHHHHHHHcCCCceeeeeeccccCCCcccc
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDG--TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdg--S~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD 280 (413)
+.+++++.+.+.+-|+++ |||-. +......+.+.+++. .++||+.-|.+.+.=.++-|
T Consensus 12 ~~~~ia~~v~~~gtDaI~-VGGS~gvt~~~~~~~v~~ik~~-~~lPvilfp~~~~~i~~~aD 71 (205)
T TIGR01769 12 EIEKIAKNAKDAGTDAIM-VGGSLGIVESNLDQTVKKIKKI-TNLPVILFPGNVNGLSRYAD 71 (205)
T ss_pred HHHHHHHHHHhcCCCEEE-EcCcCCCCHHHHHHHHHHHHhh-cCCCEEEECCCccccCcCCC
Confidence 456788889999999875 55553 445555566666653 46888989988876555554
No 277
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=24.38 E-value=3.8e+02 Score=28.37 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=29.8
Q ss_pred eeeecCCCCcHHHHHHHHHHhCCcEEEEEcCCcchHH
Q 015095 212 ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKG 248 (413)
Q Consensus 212 ~LGTsR~~~d~~~iv~~l~~~~Id~LivIGGdgS~~~ 248 (413)
+||......|+.++.+.|++.|++...++.|+.|+..
T Consensus 202 iiG~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~ee 238 (456)
T TIGR01283 202 LIGEFNVAGEFWHVKPLLEKLGIRVLATITGDSRYAE 238 (456)
T ss_pred EEcCCCCcccHHHHHHHHHHcCCeEEEEeCCCCcHHH
Confidence 5665444457889999999999999999999887655
No 278
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=24.22 E-value=3e+02 Score=27.46 Aligned_cols=39 Identities=31% Similarity=0.461 Sum_probs=27.5
Q ss_pred eeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhc
Q 015095 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGF 189 (413)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL 189 (413)
.+|..+ || .|| |+..+...+...|++.+|.|.++||-.-
T Consensus 109 ~~vfll--Gg-kp~---V~~~a~~~l~~~~p~l~ivg~h~GYf~~ 147 (253)
T COG1922 109 KRVFLL--GG-KPG---VAEQAAAKLRAKYPGLKIVGSHDGYFDP 147 (253)
T ss_pred ceEEEe--cC-CHH---HHHHHHHHHHHHCCCceEEEecCCCCCh
Confidence 465554 33 444 5666666677779999999999998643
No 279
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=24.17 E-value=7.7e+02 Score=25.05 Aligned_cols=104 Identities=21% Similarity=0.191 Sum_probs=50.7
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee-eccccCCCcccccccCchhHHHHHHHHHHHH
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI-PKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI-PkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i 299 (413)
...++++.+++..=+..+++|.-.|...|..+.+ .|.+.-+|++ |.++...-..+.....--|++..+.++++..
T Consensus 121 ~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~----aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~ 196 (325)
T cd00381 121 YVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLID----AGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDY 196 (325)
T ss_pred HHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHh----cCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhc
Confidence 3456667777654345566677777777776654 3665433332 5443211111111111224444444433211
Q ss_pred HHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEc
Q 015095 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLI 339 (413)
Q Consensus 300 ~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilI 339 (413)
++-|| ..|+-.----...+|+. |||.+.+
T Consensus 197 ---------~vpVI-A~GGI~~~~di~kAla~-GA~~Vmi 225 (325)
T cd00381 197 ---------GVPVI-ADGGIRTSGDIVKALAA-GADAVML 225 (325)
T ss_pred ---------CCcEE-ecCCCCCHHHHHHHHHc-CCCEEEe
Confidence 23344 44554333333455666 7998888
No 280
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=24.17 E-value=6.6e+02 Score=24.31 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=25.2
Q ss_pred cEEEEEcCCcchHHH-HHHHHHHHHcCCCceeeeeec
Q 015095 235 NQVYIIGGDGTQKGA-ALIYKEVEKRGLQVAVAGIPK 270 (413)
Q Consensus 235 d~LivIGGdgS~~~a-~~L~e~~~~~~~~i~vvgIPk 270 (413)
+.+|+.||.+..-.. ..|++++.++|+++.+++-|.
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~ 38 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKR 38 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCC
Confidence 357788888765543 478888888888777776544
No 281
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=24.13 E-value=2.9e+02 Score=27.34 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCcEEEEE-----cCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCC
Q 015095 224 KIVDNIEDRGINQVYII-----GGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (413)
Q Consensus 224 ~iv~~l~~~~Id~LivI-----GGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI 276 (413)
+.++..-.+|.|-.+.| +|.+++.+|..|+..+++.++++-++|- .|+|.|-
T Consensus 71 ~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~-~s~D~~t 127 (256)
T PRK03359 71 KGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGD-GSSDLYA 127 (256)
T ss_pred HHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcC-ccccCCC
Confidence 55565567888877777 4668899999999999888888877774 5666654
No 282
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=24.13 E-value=1.5e+02 Score=27.54 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=30.7
Q ss_pred HHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHH
Q 015095 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (413)
Q Consensus 229 l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~ 291 (413)
+...+.+++++-||.++-.......+.+++...++|+.|| |+|++.-...
T Consensus 39 ~~~~~~~~iilsgGp~~~~~~~~~~~~i~~~~~~~PiLGI-------------ClG~Qlia~a 88 (193)
T PRK08857 39 IEALNPTHLVISPGPCTPNEAGISLQAIEHFAGKLPILGV-------------CLGHQAIAQV 88 (193)
T ss_pred HhhCCCCEEEEeCCCCChHHCcchHHHHHHhcCCCCEEEE-------------cHHHHHHHHH
Confidence 4567789999999998765322111222222335677777 9998764443
No 283
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=24.05 E-value=6.1e+02 Score=26.97 Aligned_cols=101 Identities=25% Similarity=0.316 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee-eccccCCCcccccccCch--hHHHHHHHHHHH
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI-PKTIDNDIAVIDKSFGFD--TAVEEAQRAINA 298 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI-PkTIDNDI~gtD~S~GFd--TAv~~~~~~i~~ 298 (413)
..+.++.+++.-.+..++.|+--|...|..+.+. |.+.-.||+ |.+|.-.-..++ +|.. ||+..+.+++..
T Consensus 252 ~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a----Gad~i~vg~g~G~~~~t~~~~~--~g~p~~~~i~~~~~~~~~ 325 (450)
T TIGR01302 252 VIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA----GADGLRVGIGPGSICTTRIVAG--VGVPQITAVYDVAEYAAQ 325 (450)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh----CCCEEEECCCCCcCCccceecC--CCccHHHHHHHHHHHHhh
Confidence 4556666666545777777777888888777653 666545565 665543221111 2333 454444443321
Q ss_pred HHHhhhccCCcEEEEEcCC--CCcchHHHHHhhhcCCccEEEcCC
Q 015095 299 AHVEVESVENGVGIVKLMG--RYSGFISMYATLASRDVDCCLIPE 341 (413)
Q Consensus 299 i~~~A~s~~~rv~iVEvMG--R~sG~LA~~aaLA~~~ad~ilIPE 341 (413)
.++-++ ..| |+.|.++ -|||. ||+.+.+-.
T Consensus 326 ---------~~vpvi-adGGi~~~~di~--kAla~-GA~~V~~G~ 357 (450)
T TIGR01302 326 ---------SGIPVI-ADGGIRYSGDIV--KALAA-GADAVMLGS 357 (450)
T ss_pred ---------cCCeEE-EeCCCCCHHHHH--HHHHc-CCCEEEECc
Confidence 123332 234 4667765 45556 688776643
No 284
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=23.86 E-value=4.8e+02 Score=22.56 Aligned_cols=69 Identities=17% Similarity=0.189 Sum_probs=44.0
Q ss_pred EcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHHHHhhhccCCcEEEEEcCCCC
Q 015095 240 IGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRY 319 (413)
Q Consensus 240 IGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i~~~A~s~~~rv~iVEvMGR~ 319 (413)
-||.|.-.-+..++..+.++|..+-+ +|=|..+.... ..+-|+.+-+.
T Consensus 8 kgg~gkt~~~~~~a~~~~~~~~~~~~------vd~D~~~~~~~-------------------------yd~VIiD~p~~- 55 (139)
T cd02038 8 KGGVGKTNISANLALALAKLGKRVLL------LDADLGLANLD-------------------------YDYIIIDTGAG- 55 (139)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCcEEE------EECCCCCCCCC-------------------------CCEEEEECCCC-
Confidence 37888777888899888887866433 56666544322 34778887764
Q ss_pred cchHHHHHhhhcCCccEEEcCCCC
Q 015095 320 SGFISMYATLASRDVDCCLIPESP 343 (413)
Q Consensus 320 sG~LA~~aaLA~~~ad~ilIPE~p 343 (413)
.+..+.. ++. .+|.+++|=.+
T Consensus 56 ~~~~~~~-~l~--~aD~vviv~~~ 76 (139)
T cd02038 56 ISDNVLD-FFL--AADEVIVVTTP 76 (139)
T ss_pred CCHHHHH-HHH--hCCeEEEEcCC
Confidence 4555443 333 47888887665
No 285
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=23.82 E-value=89 Score=30.03 Aligned_cols=34 Identities=12% Similarity=0.301 Sum_probs=23.9
Q ss_pred HHHhCCcEEEEEcCCcch----------------HHHHHHHHHHHHcCCC
Q 015095 229 IEDRGINQVYIIGGDGTQ----------------KGAALIYKEVEKRGLQ 262 (413)
Q Consensus 229 l~~~~Id~LivIGGdgS~----------------~~a~~L~e~~~~~~~~ 262 (413)
+.-.+.|+||+.||.+.+ ..+.+|.+.+.+.+-.
T Consensus 81 v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~ 130 (217)
T PRK11780 81 ADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKP 130 (217)
T ss_pred CChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCE
Confidence 344578999999999864 3466666666666644
No 286
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=23.79 E-value=6.6e+02 Score=24.16 Aligned_cols=82 Identities=16% Similarity=0.269 Sum_probs=43.9
Q ss_pred cEEEEEcCCc----chHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccc----cCchhHHHHHHHHHHHHHHhhhcc
Q 015095 235 NQVYIIGGDG----TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKS----FGFDTAVEEAQRAINAAHVEVESV 306 (413)
Q Consensus 235 d~LivIGGdg----S~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S----~GFdTAv~~~~~~i~~i~~~A~s~ 306 (413)
-.|++.||.+ +.+.-..+++.+.++|+.+-.+ |.+|...| .+++...+.+..+++.+.......
T Consensus 28 ~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~--------Dl~G~G~S~~~~~~~~~~~~d~~~~~~~l~~~~~g~ 99 (274)
T TIGR03100 28 GVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRF--------DYRGMGDSEGENLGFEGIDADIAAAIDAFREAAPHL 99 (274)
T ss_pred eEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEe--------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhCCCC
Confidence 4677888874 4443456777777778763333 34443333 345555566667777665443222
Q ss_pred CCcEEEEEcCCCCc-chHHHHHh
Q 015095 307 ENGVGIVKLMGRYS-GFISMYAT 328 (413)
Q Consensus 307 ~~rv~iVEvMGR~s-G~LA~~aa 328 (413)
.++.+ +|.+. |.+|+..+
T Consensus 100 -~~i~l---~G~S~Gg~~a~~~a 118 (274)
T TIGR03100 100 -RRIVA---WGLCDAASAALLYA 118 (274)
T ss_pred -CcEEE---EEECHHHHHHHHHh
Confidence 23443 34444 34455444
No 287
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=23.67 E-value=73 Score=29.23 Aligned_cols=48 Identities=21% Similarity=0.394 Sum_probs=28.7
Q ss_pred HHHhCCcEEEEEcCCcchHH--HHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHH
Q 015095 229 IEDRGINQVYIIGGDGTQKG--AALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (413)
Q Consensus 229 l~~~~Id~LivIGGdgS~~~--a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~ 291 (413)
+.++++|+|++-||..+... ...+.+.+.+ .++|+.|| |+|++.....
T Consensus 37 ~~~~~~~glii~Gg~~~~~~~~~~~~i~~~~~--~~~PilGI-------------C~G~Qll~~~ 86 (188)
T TIGR00888 37 IREKNPKGIILSGGPSSVYAENAPRADEKIFE--LGVPVLGI-------------CYGMQLMAKQ 86 (188)
T ss_pred HhhcCCCEEEECCCCCCcCcCCchHHHHHHHh--CCCCEEEE-------------CHHHHHHHHh
Confidence 34567789999999876432 1222222222 23456666 9999876543
No 288
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.66 E-value=5.9e+02 Score=23.55 Aligned_cols=86 Identities=21% Similarity=0.319 Sum_probs=48.4
Q ss_pred EEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecC-CCCcHHHH
Q 015095 147 ACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSR-GGHDTNKI 225 (413)
Q Consensus 147 iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR-~~~d~~~i 225 (413)
|||+...-..|-.+.+++++-..+.+ ++ ..+. +..+. ..+...+.
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~~~~ 47 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQ-YG-YTVL--------------------------------LCNTYRGGVSEADY 47 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCChHHHHHH
Confidence 56777665667777777777766643 22 2221 11111 12334578
Q ss_pred HHHHHHhCCcEEEEEcCCcch-HHHHHHHHHHHHcCCCceeeee
Q 015095 226 VDNIEDRGINQVYIIGGDGTQ-KGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 226 v~~l~~~~Id~LivIGGdgS~-~~a~~L~e~~~~~~~~i~vvgI 268 (413)
++.|...++|++++.+..-.. .......+.+.+++ ++||.+
T Consensus 48 i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~--ipvV~i 89 (273)
T cd06292 48 VEDLLARGVRGVVFISSLHADTHADHSHYERLAERG--LPVVLV 89 (273)
T ss_pred HHHHHHcCCCEEEEeCCCCCcccchhHHHHHHHhCC--CCEEEE
Confidence 899999999999999854222 11112223344445 556655
No 289
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=23.63 E-value=2e+02 Score=30.41 Aligned_cols=54 Identities=13% Similarity=0.250 Sum_probs=40.9
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccC
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDN 274 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDN 274 (413)
.+.++.+..|...++|.++||||--|-.+ .+|++-+++.+.+.-.|-=+.=|+-
T Consensus 275 ~~RQ~A~~~La~~~vD~miVVGG~nSSNT-~rL~eia~~~g~~ty~Ie~~~eL~~ 328 (387)
T PRK13371 275 QERQDAMFSLVEEPLDLMVVIGGYNSSNT-THLQEIAIERGIPSYHIDSPERILS 328 (387)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCCCccH-HHHHHHHHhcCCCEEEECCHHHcCC
Confidence 46778888887778999999999999776 5588888887766555555555554
No 290
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=23.48 E-value=1.1e+02 Score=30.78 Aligned_cols=32 Identities=22% Similarity=0.434 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCC-CcchHHHHHhhhcCCccEEEc
Q 015095 307 ENGVGIVKLMGR-YSGFISMYATLASRDVDCCLI 339 (413)
Q Consensus 307 ~~rv~iVEvMGR-~sG~LA~~aaLA~~~ad~ilI 339 (413)
.+.|++|=|||- |.||+++.-.-.. ..|.+++
T Consensus 21 ~~~igfVPTMGaLHeGHlsLi~~A~~-~~d~vVV 53 (280)
T PF02569_consen 21 GKTIGFVPTMGALHEGHLSLIRRARA-ENDVVVV 53 (280)
T ss_dssp TSSEEEEEE-SS--HHHHHHHHHHHH-HSSEEEE
T ss_pred CCeEEEECCCchhhHHHHHHHHHHHh-CCCEEEE
Confidence 467999999998 9999998876555 5676554
No 291
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.46 E-value=5.1e+02 Score=24.41 Aligned_cols=90 Identities=12% Similarity=0.259 Sum_probs=64.4
Q ss_pred EEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChh-hHhhhhhcCCceeeecCCCCcHHHHH
Q 015095 148 CIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPK-VVNDIHKRGGTILRTSRGGHDTNKIV 226 (413)
Q Consensus 148 aIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~-~V~~i~~~GGs~LGTsR~~~d~~~iv 226 (413)
+|+..|-...++-..++.+|+. +++. |-+. ..-+|. .+..|.. ||...--.=++..+..+.
T Consensus 34 gil~~~e~De~v~esv~dVv~r----wGG~--F~v~-----------~~~nw~~~i~~wk~-gG~vvHLTMYG~~i~dv~ 95 (179)
T COG1303 34 GILLDGEEDEKVVESVEDVVER----WGGP--FFVK-----------FGVNWRKVIREWKE-GGIVVHLTMYGLNIDDVI 95 (179)
T ss_pred eEEEcCcccHHHHHHHHHHHHh----cCCC--EEEE-----------EcccHHHHHHHhhc-CCEEEEEEecCCcchhhh
Confidence 5666666667888888888853 5653 3332 224565 5777888 997665555566777888
Q ss_pred HHHHHhCCcEEEEEcCCcchHHHHHHHHH
Q 015095 227 DNIEDRGINQVYIIGGDGTQKGAALIYKE 255 (413)
Q Consensus 227 ~~l~~~~Id~LivIGGdgS~~~a~~L~e~ 255 (413)
+.|++.+=+-|+++|+.---.-+..|+++
T Consensus 96 ~ei~~~~k~~lvvVGaeKVp~evYelADy 124 (179)
T COG1303 96 DEIRESKKDVLVVVGAEKVPGEVYELADY 124 (179)
T ss_pred HHHHhcCCcEEEEEccccCCHHHhhhccc
Confidence 88888888899999999888877777754
No 292
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=23.42 E-value=1.5e+02 Score=27.24 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=35.6
Q ss_pred EcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCC--ChhhHHHHHHHHHHhCCcEEEEEe
Q 015095 314 KLMGRYSGFISMYATLASRDVDCCLIPESPFYLE--GPGGLFEFIERQLKENGHMVIVVA 371 (413)
Q Consensus 314 EvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~--~~~~~~e~i~~r~~~~~~~vIvva 371 (413)
++-|+..=.+++..+|+. .++++++=|---.+| ....+.+.|++ +++++..+|+++
T Consensus 137 ~LS~G~~qrl~la~al~~-~p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~~~~tii~~t 194 (214)
T TIGR02673 137 QLSGGEQQRVAIARAIVN-SPPLLLADEPTGNLDPDLSERILDLLKR-LNKRGTTVIVAT 194 (214)
T ss_pred hCCHHHHHHHHHHHHHhC-CCCEEEEeCCcccCCHHHHHHHHHHHHH-HHHcCCEEEEEe
Confidence 455555667899999998 799988855433344 23345555554 344466777766
No 293
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=23.35 E-value=3.1e+02 Score=26.81 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=25.9
Q ss_pred CChhhHhhhhhcCCceeeecCCCCcHHHHHHHHHHhCCcEEEEEcCC
Q 015095 197 LSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGD 243 (413)
Q Consensus 197 Lt~~~V~~i~~~GGs~LGTsR~~~d~~~iv~~l~~~~Id~LivIGGd 243 (413)
+....++.+...||..+--.+...+.+...+.+. .+|+|++.||.
T Consensus 27 ~~~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~--~~DGlil~GG~ 71 (254)
T PRK11366 27 LQEKYLNAIIHAGGLPIALPHALAEPSLLEQLLP--KLDGIYLPGSP 71 (254)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCCCHHHHHHHHH--hCCEEEeCCCC
Confidence 4445667777788865544443222222223333 29999999984
No 294
>PLN02591 tryptophan synthase
Probab=23.18 E-value=2e+02 Score=28.38 Aligned_cols=47 Identities=19% Similarity=0.358 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee-ec
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI-PK 270 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI-Pk 270 (413)
..++.++.+++.++++|++. |=.+..+..+.+.++++|+.. |..| |.
T Consensus 94 G~~~F~~~~~~aGv~Gviip--DLP~ee~~~~~~~~~~~gl~~-I~lv~Pt 141 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVP--DLPLEETEALRAEAAKNGIEL-VLLTTPT 141 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeC--CCCHHHHHHHHHHHHHcCCeE-EEEeCCC
Confidence 46889999999999999999 667888889999999999875 4455 53
No 295
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=23.18 E-value=1.5e+02 Score=32.68 Aligned_cols=16 Identities=6% Similarity=0.167 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhCCcEE
Q 015095 222 TNKIVDNIEDRGINQV 237 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~L 237 (413)
.+++.+.|++++|..=
T Consensus 426 ~~~~~~~l~~~g~~~~ 441 (577)
T PLN02948 426 MKDAAEILDSFGVPYE 441 (577)
T ss_pred HHHHHHHHHHcCCCeE
Confidence 4566666666666643
No 296
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=23.16 E-value=1.2e+02 Score=25.77 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcch----HHHHHHHHHHHHcCC
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQ----KGAALIYKEVEKRGL 261 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~----~~a~~L~e~~~~~~~ 261 (413)
..+++++.++++++..+.+.||.-.+ .....+.++++++..
T Consensus 40 ~~~~ii~~~~~~~~~~i~l~GGEPll~~~~~~l~~i~~~~k~~~~ 84 (139)
T PF13353_consen 40 IIEEIIEELKNYGIKGIVLTGGEPLLHENYDELLEILKYIKEKFP 84 (139)
T ss_dssp HHHHHCHHHCCCCCCEEEEECSTGGGHHSHHHHHHHHHHHHHTT-
T ss_pred hhhhhhhHHhcCCceEEEEcCCCeeeeccHhHHHHHHHHHHHhCC
Confidence 35777788888899999999999888 667778888877765
No 297
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=23.00 E-value=5.8e+02 Score=24.59 Aligned_cols=127 Identities=23% Similarity=0.364 Sum_probs=65.7
Q ss_pred EEEEcCCcchHHHHHHHHHHHHcCCCceeeeeecc---ccCCC-c-ccccccCchhHHHHHHHHHHHHHHhhhccCCcEE
Q 015095 237 VYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT---IDNDI-A-VIDKSFGFDTAVEEAQRAINAAHVEVESVENGVG 311 (413)
Q Consensus 237 LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkT---IDNDI-~-gtD~S~GFdTAv~~~~~~i~~i~~~A~s~~~rv~ 311 (413)
.|+..|+.+.....+..+.+.+.|.+.-=++||-+ .|..+ + -+..++--.+-+...-+.+..++... ..+
T Consensus 4 ~y~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~p---- 78 (242)
T cd04724 4 PYITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIP---- 78 (242)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCC----
Confidence 57889999988888888888887877555666641 11111 0 00011111111113334444444332 222
Q ss_pred EEEcCCCCc-----chHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCC-cEEEEEeCCCC
Q 015095 312 IVKLMGRYS-----GFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENG-HMVIVVAEGAG 375 (413)
Q Consensus 312 iVEvMGR~s-----G~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~-~~vIvvaEGa~ 375 (413)
++ +|.-.. |.-...--++.-|+|.+++|..|+. -++.+.+++++.| ..+++++-...
T Consensus 79 v~-lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~e------e~~~~~~~~~~~g~~~i~~i~P~T~ 141 (242)
T cd04724 79 IV-LMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPE------EAEEFREAAKEYGLDLIFLVAPTTP 141 (242)
T ss_pred EE-EEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHH------HHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 22 666632 2222222233237999999988762 2344555566665 35566666554
No 298
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=22.80 E-value=6.6e+02 Score=26.38 Aligned_cols=70 Identities=17% Similarity=0.098 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHH---HHHHHHHHHHc---CCCceeeeeeccccCCCcccccccCchhHHHHHHHHH
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKG---AALIYKEVEKR---GLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAI 296 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~---a~~L~e~~~~~---~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i 296 (413)
+.|.+..++++-+.++|+.+=-+-.. ...+.++++++ ...++|+.|+. .+..+ .+.-||+.|++.+.+.+
T Consensus 71 ~~i~~~~~~~~p~~I~V~ttc~~eiIGdDi~~v~~~~~~~~p~~~~~~vi~v~t---~gf~g-~~~~G~~~a~~al~~~l 146 (417)
T cd01966 71 EALDTLAERAKPKVIGLLSTGLTETRGEDIAGALKQFRAEHPELADVPVVYVST---PDFEG-SLEDGWAAAVEAIIEAL 146 (417)
T ss_pred HHHHHHHHhcCCCEEEEECCCcccccccCHHHHHHHHHhhccccCCCeEEEecC---CCCCC-cHHHHHHHHHHHHHHHh
Confidence 44555566889998888774433221 12222333322 13467777653 34444 36778888887776543
No 299
>PRK13276 cell wall biosynthesis protein ScdA; Provisional
Probab=22.75 E-value=79 Score=30.87 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHH
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAA 250 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~ 250 (413)
..+.++.|+++||| ||+||+.|+..|.
T Consensus 15 ~P~aa~VF~~~gId--fCcgg~~tLeeA~ 41 (224)
T PRK13276 15 YPKAADIFRSVGID--FCCGGQVSIEAAS 41 (224)
T ss_pred CccHHHHHHHcCCC--cCCCCChhHHHHH
Confidence 45678899999999 4999998887766
No 300
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=22.35 E-value=2.4e+02 Score=24.48 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=32.1
Q ss_pred CCeeeCChhhHhhh-hhcCCceeeecCCCCcHHHHHHHHHHh--CCcEEEEEcCCc
Q 015095 192 KNTLTLSPKVVNDI-HKRGGTILRTSRGGHDTNKIVDNIEDR--GINQVYIIGGDG 244 (413)
Q Consensus 192 ~~~~~Lt~~~V~~i-~~~GGs~LGTsR~~~d~~~iv~~l~~~--~Id~LivIGGdg 244 (413)
++..+-+-..+..+ ...|........-..+.+.|.+.+++. +.|.+++.||-|
T Consensus 14 g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g 69 (133)
T cd00758 14 GQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTG 69 (133)
T ss_pred CceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCC
Confidence 45556666556654 444555444333345666666665543 489999999977
No 301
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=22.14 E-value=1.5e+02 Score=28.54 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=37.1
Q ss_pred EcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCC--ChhhHHHHHHHHHHhCCcEEEEEeCC
Q 015095 314 KLMGRYSGFISMYATLASRDVDCCLIPESPFYLE--GPGGLFEFIERQLKENGHMVIVVAEG 373 (413)
Q Consensus 314 EvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~--~~~~~~e~i~~r~~~~~~~vIvvaEG 373 (413)
++-|+..=-+++..+|+. +++++++=|---.+| ....+.+.|++..++.+..+|+++--
T Consensus 150 ~LSgGe~qrv~laral~~-~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~ 210 (265)
T TIGR02769 150 QLSGGQLQRINIARALAV-KPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHD 210 (265)
T ss_pred hCCHHHHHHHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 455555556888889998 799999855443444 22345565554333346677777644
No 302
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=22.12 E-value=8.3e+02 Score=26.39 Aligned_cols=103 Identities=13% Similarity=0.114 Sum_probs=65.6
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCC-ceeeeeeccccCCCcccccccCchhHHHHHHHHHHHH
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQ-VAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~-i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i 299 (413)
....+++.+++.-.+..++.|.-.|..++..|.+. |.+ |.|-+=|.||.+-=..++....-.||+-.+++++...
T Consensus 252 ~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~----G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~ 327 (475)
T TIGR01303 252 KMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEA----GANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKL 327 (475)
T ss_pred HHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHh----CCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHc
Confidence 35677888888756666666556778888888764 655 4456668898876666666566666666665554422
Q ss_pred HHhhhccCCcEEEEEcCC--CCcchHHHHHhhhcCCccEEEcC
Q 015095 300 HVEVESVENGVGIVKLMG--RYSGFISMYATLASRDVDCCLIP 340 (413)
Q Consensus 300 ~~~A~s~~~rv~iVEvMG--R~sG~LA~~aaLA~~~ad~ilIP 340 (413)
++.|| ..| |++|.++- |||. |||.+.+-
T Consensus 328 ---------~~~vi-adGgi~~~~di~k--ala~-GA~~vm~g 357 (475)
T TIGR01303 328 ---------GGHVW-ADGGVRHPRDVAL--ALAA-GASNVMVG 357 (475)
T ss_pred ---------CCcEE-EeCCCCCHHHHHH--HHHc-CCCEEeec
Confidence 23333 244 46777764 4555 67777664
No 303
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=21.90 E-value=7.8e+02 Score=24.29 Aligned_cols=129 Identities=25% Similarity=0.273 Sum_probs=71.4
Q ss_pred CcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeecc-ccCCCcccccccCchhHH------HHHHHHHHHHHHhhhcc
Q 015095 234 INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT-IDNDIAVIDKSFGFDTAV------EEAQRAINAAHVEVESV 306 (413)
Q Consensus 234 Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkT-IDNDI~gtD~S~GFdTAv------~~~~~~i~~i~~~A~s~ 306 (413)
.=..|+..|+.+.....++.+.+.+.|.++-=+|+|=+ =--|=|.+..+ ..-|+ +.+-+.+..++...
T Consensus 13 ~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a--~~~AL~~G~~~~~~~~~~~~~r~~~--- 87 (258)
T PRK13111 13 ALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAA--SLRALAAGVTLADVFELVREIREKD--- 87 (258)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHH--HHHHHHcCCCHHHHHHHHHHHHhcC---
Confidence 45678999999999999999998888988878899842 00011222211 11121 11222333333111
Q ss_pred CCcEEEEEcCCCCc-----chHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCc-EEEEEeCCCC
Q 015095 307 ENGVGIVKLMGRYS-----GFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGH-MVIVVAEGAG 375 (413)
Q Consensus 307 ~~rv~iVEvMGR~s-----G~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~~-~vIvvaEGa~ 375 (413)
..+-+| +|+=+. |.=...-.++.-|+|-++||..|++ -.+.+.++.++.|- .|.+++....
T Consensus 88 -~~~p~v-lm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~e------e~~~~~~~~~~~gl~~I~lvap~t~ 154 (258)
T PRK13111 88 -PTIPIV-LMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPE------EAEELRAAAKKHGLDLIFLVAPTTT 154 (258)
T ss_pred -CCCCEE-EEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHH------HHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 123344 777332 4332222333337999999988872 22344555566664 4455776653
No 304
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.74 E-value=1.1e+02 Score=24.04 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=32.0
Q ss_pred CcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchh
Q 015095 243 DGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT 287 (413)
Q Consensus 243 dgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdT 287 (413)
+.|...|.+..+.+++.|++..++-+|..|+.+ -..++-|+-
T Consensus 8 F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~---CG~al~~~~ 49 (73)
T PF11823_consen 8 FPSTHDAMKAEKLLKKNGIPVRLIPTPREISAG---CGLALRFEP 49 (73)
T ss_pred ECCHHHHHHHHHHHHHCCCcEEEeCCChhccCC---CCEEEEECh
Confidence 567778888888899999999999999988655 223555543
No 305
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=21.49 E-value=7.6e+02 Score=26.75 Aligned_cols=97 Identities=22% Similarity=0.255 Sum_probs=47.4
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee-eccccCCCccccc--ccCch--hHHHHHHHHHHH
Q 015095 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI-PKTIDNDIAVIDK--SFGFD--TAVEEAQRAINA 298 (413)
Q Consensus 224 ~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI-PkTIDNDI~gtD~--S~GFd--TAv~~~~~~i~~ 298 (413)
+.++.+++.--+..++.|.-.|...|..+.+ .|.+.-.||+ |.++. .|.. -+|.. ||+..+.++++.
T Consensus 271 ~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~----aGad~I~vg~g~Gs~~----~t~~~~~~g~p~~~ai~~~~~~~~~ 342 (495)
T PTZ00314 271 DMIKKLKSNYPHVDIIAGNVVTADQAKNLID----AGADGLRIGMGSGSIC----ITQEVCAVGRPQASAVYHVARYARE 342 (495)
T ss_pred HHHHHHHhhCCCceEEECCcCCHHHHHHHHH----cCCCEEEECCcCCccc----ccchhccCCCChHHHHHHHHHHHhh
Confidence 3455555543355555566666666665554 2555444444 54442 1110 12333 344444443321
Q ss_pred HHHhhhccCCcEEEEEcCC-CCcchHHHHHhhhcCCccEEEcC
Q 015095 299 AHVEVESVENGVGIVKLMG-RYSGFISMYATLASRDVDCCLIP 340 (413)
Q Consensus 299 i~~~A~s~~~rv~iVEvMG-R~sG~LA~~aaLA~~~ad~ilIP 340 (413)
.++-++=-=| |+.|.++-+ ||. |||.+.+-
T Consensus 343 ---------~~v~vIadGGi~~~~di~kA--la~-GA~~Vm~G 373 (495)
T PTZ00314 343 ---------RGVPCIADGGIKNSGDICKA--LAL-GADCVMLG 373 (495)
T ss_pred ---------cCCeEEecCCCCCHHHHHHH--HHc-CCCEEEEC
Confidence 1244443334 677877654 444 68877764
No 306
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=21.39 E-value=2e+02 Score=28.91 Aligned_cols=77 Identities=10% Similarity=0.178 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCC-ccc---ccccCchhHHHHHHHHH
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI-AVI---DKSFGFDTAVEEAQRAI 296 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI-~gt---D~S~GFdTAv~~~~~~i 296 (413)
++++.+..|.+ .+|.++||||..|-.+ .+|++-+++++.+.-.|-=|.=|+.+. .+. --|=|..|=-..+.+.+
T Consensus 198 ~RQ~a~~~La~-~vD~miVIGg~~SsNT-~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi 275 (281)
T PF02401_consen 198 NRQEAARELAK-EVDAMIVIGGKNSSNT-RKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEVI 275 (281)
T ss_dssp HHHHHHHHHHC-CSSEEEEES-TT-HHH-HHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHH
T ss_pred HHHHHHHHHHh-hCCEEEEecCCCCccH-HHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHHH
Confidence 35666777754 6999999999999654 668898888776544444344333221 111 12345555444444444
Q ss_pred HHH
Q 015095 297 NAA 299 (413)
Q Consensus 297 ~~i 299 (413)
+.+
T Consensus 276 ~~l 278 (281)
T PF02401_consen 276 DRL 278 (281)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 307
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=21.31 E-value=2.7e+02 Score=26.64 Aligned_cols=87 Identities=17% Similarity=0.139 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHH-HHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHHH
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGA-ALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAH 300 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a-~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i~ 300 (413)
+..+++.|.++|+..+++|-|-|.+..+ ...++++.++...+.+..+.- ..+.-+..
T Consensus 88 l~di~~sl~~~Gf~~ivivngHgGN~~~l~~~~~~l~~~~~~~~v~~~~~----------~~~~~~~~------------ 145 (237)
T PF02633_consen 88 LRDILRSLARHGFRRIVIVNGHGGNIAALEAAARELRQEYPGVKVFVINW----------WQLAEDEG------------ 145 (237)
T ss_dssp HHHHHHHHHHHT--EEEEEESSTTHHHHHHHHHHHHHHHGCC-EEEEEEG----------GGCSHCHH------------
T ss_pred HHHHHHHHHHcCCCEEEEEECCHhHHHHHHHHHHHHHhhCCCcEEEEeec----------hhccchhh------------
Confidence 6789999999999999999999886643 334455554423344443321 01100000
Q ss_pred HhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEE
Q 015095 301 VEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCL 338 (413)
Q Consensus 301 ~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~il 338 (413)
.. -..-+..+.|+|..=++..|+- .++++=
T Consensus 146 --~~-----~~~~~~~~~HAg~~ETS~~lal-~PelV~ 175 (237)
T PF02633_consen 146 --AA-----GEDFETGGGHAGEFETSLMLAL-RPELVR 175 (237)
T ss_dssp --HC-----TCCCCGCCSBSSHHHHHHHHHH--GGGB-
T ss_pred --cc-----ccccCCCCCCCCHHHHHHHHHh-CHHhcC
Confidence 10 1123567888888888888877 455543
No 308
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=21.27 E-value=3.6e+02 Score=26.31 Aligned_cols=63 Identities=13% Similarity=0.179 Sum_probs=40.9
Q ss_pred hhhcCCceeeecCC---CCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeec
Q 015095 205 IHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (413)
Q Consensus 205 i~~~GGs~LGTsR~---~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPk 270 (413)
+...|+.+..+.+. ..|+...+..|++.+.|.+++.+... .+..+.+.+++.|++.++++...
T Consensus 165 ~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~i~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~ 230 (345)
T cd06338 165 AEAAGLEVVYDETYPPGTADLSPLISKAKAAGPDAVVVAGHFP---DAVLLVRQMKELGYNPKALYMTV 230 (345)
T ss_pred HHHcCCEEEEEeccCCCccchHHHHHHHHhcCCCEEEECCcch---hHHHHHHHHHHcCCCCCEEEEec
Confidence 44566666665543 25778888888888899887665544 23345566667787766665533
No 309
>PRK09330 cell division protein FtsZ; Validated
Probab=21.25 E-value=3.6e+02 Score=28.40 Aligned_cols=110 Identities=17% Similarity=0.274 Sum_probs=54.9
Q ss_pred CCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCce---eeecCC-
Q 015095 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTI---LRTSRG- 218 (413)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~---LGTsR~- 218 (413)
...+|.|+-+|| |.|++|..+++.- ..+-+.+++.-=.+-|- ......-...|-.. +|+...
T Consensus 12 ~~~~IkViGvGG---~G~Nav~~m~~~~---~~~v~fia~NTD~q~L~--------~~~a~~ki~lG~~~t~GlGaG~~p 77 (384)
T PRK09330 12 QGAVIKVIGVGG---GGGNAVNRMIEEG---IQGVEFIAANTDAQALL--------KSKAPVKIQLGEKLTRGLGAGANP 77 (384)
T ss_pred cCCeEEEEEECC---cHHHHHHHHHHcC---CCCceEEEEeCcHHHHh--------cCCCCeEEEcCCcccccCCCCCCH
Confidence 456899999888 3444555555432 12235666554333222 11111111111110 333322
Q ss_pred -------CCcHHHHHHHHHHhCCcEEEEEcC----CcchHHHHHHHHHHHHcCCC-ceeeeee
Q 015095 219 -------GHDTNKIVDNIEDRGINQVYIIGG----DGTQKGAALIYKEVEKRGLQ-VAVAGIP 269 (413)
Q Consensus 219 -------~~d~~~iv~~l~~~~Id~LivIGG----dgS~~~a~~L~e~~~~~~~~-i~vvgIP 269 (413)
.++.++|-+.|+ +-|.+|++-| -||=.+ -.+++.+++++.. +.|+..|
T Consensus 78 e~G~~aaee~~e~I~~~l~--~~D~vfI~AGmGGGTGTGaa-pvIA~iake~g~ltvaVvt~P 137 (384)
T PRK09330 78 EVGRKAAEESREEIREALE--GADMVFITAGMGGGTGTGAA-PVVAEIAKELGILTVAVVTKP 137 (384)
T ss_pred HHHHHHHHHHHHHHHHHHc--CCCEEEEEecCCCcccHHHH-HHHHHHHHHcCCcEEEEEecC
Confidence 124556666664 6899999855 344333 3567777777643 4455455
No 310
>PF10432 bact-PGI_C: Bacterial phospho-glucose isomerase C-terminal region; InterPro: IPR019490 Phosphoglucose isomerase (PGI) catalyses the interconversion of phosphoglucose and phosphofructose, and is a component of many sugar metabolic pathways. In some archaea and bacteria PGI activity occurs via a bifunctional enzyme that also exhibits phosphomannose isomerase (PMI) activity. Though not closely related to eukaryotic PGIs, the bifunctional enzyme is similar enough that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This entry represents the C-terminal half of the bifunctional PGI/PMI enzyme, which contains many of the active catalytic site residues. The enzyme is thought to use the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity; PDB: 1TZB_A 1X9H_A 1TZC_B 1X9I_A 1WIW_A.
Probab=21.24 E-value=6.2e+02 Score=22.88 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=61.8
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc-CCCceeeeeeccccCCCcccccc-------------cCchhH
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKS-------------FGFDTA 288 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~-~~~i~vvgIPkTIDNDI~gtD~S-------------~GFdTA 288 (413)
++++..|.. ..-++.|+.-+...|....+.+.+. +...-.-.+|---.|+|.+.+.- -+.+..
T Consensus 9 k~LA~~L~~---~~Pvi~~~~~~~~vA~R~k~qlnEnAK~~A~~~~lPE~~Hn~i~g~~~~~~~~~~~~~v~l~d~~~~~ 85 (155)
T PF10432_consen 9 KRLALELAG---RIPVIYGSPLYAAVARRWKQQLNENAKYPAFAAVLPEANHNEIVGWEGPEPPGGRLRVVLLRDPEDHP 85 (155)
T ss_dssp HHHHHHHTT---SEEEEEECGCGCHHHHHHHHHHHHTT----EEEEETCHHHCHHHCTSS-GGGGTTEEEEEEC-TCCHH
T ss_pred HHHHHHHcC---CCcEEEECccchHHHHHHHHHHHHHhCCccchhcchhhhhhhhhhccCCcccccceEEEEEEcCCccc
Confidence 344555444 5667788855555666676666665 44444455788888888665533 122332
Q ss_pred HHHHHHHHHHHHHhhhccCCcEEEEEcCCCC-----------cchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHH
Q 015095 289 VEEAQRAINAAHVEVESVENGVGIVKLMGRY-----------SGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIE 357 (413)
Q Consensus 289 v~~~~~~i~~i~~~A~s~~~rv~iVEvMGR~-----------sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~ 357 (413)
-. ...++....-+....-++.-|+.-|.+ .+|.+++.|+.. |.| |...+ .++.+|
T Consensus 86 ~~--~~r~~~~~e~~~~~~~~v~~v~~~g~s~l~rl~~li~l~d~aS~YLA~~~-GvD-------P~~v~----~I~~lK 151 (155)
T PF10432_consen 86 RV--QRRVEITREIAEDRGVRVIEVEAEGGSPLERLASLIYLGDYASVYLALLY-GVD-------PTPVP----IIDELK 151 (155)
T ss_dssp HH--HHHHHHHHHHHTTCSSEEEEE--SCCCHHHHHHHHHHHHHHHHHHHHHHC-T---------SS-TC----CCHHHH
T ss_pred cc--hhhhHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHh-CcC-------CCcch----HHHHHH
Confidence 22 222232333333333345556655555 367788888887 443 43333 445667
Q ss_pred HHH
Q 015095 358 RQL 360 (413)
Q Consensus 358 ~r~ 360 (413)
+++
T Consensus 152 ~~l 154 (155)
T PF10432_consen 152 ERL 154 (155)
T ss_dssp HHH
T ss_pred hcc
Confidence 665
No 311
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=21.21 E-value=1.2e+02 Score=31.59 Aligned_cols=98 Identities=20% Similarity=0.393 Sum_probs=48.6
Q ss_pred CCeeEEEEccCCCCchhH-HHHHHHHHHHhHhC--------CCcEEEEEcccchhccC-CCe-eeCChhhHhhhhhcC--
Q 015095 143 DEVRACIVTCGGLCPGIN-TVIREIVCGLSYMY--------GVDEILGIEGGYRGFYS-KNT-LTLSPKVVNDIHKRG-- 209 (413)
Q Consensus 143 ~~~~iaIvtsGG~apGmN-avIr~iv~~l~~~~--------~~~~V~Gi~~G~~GL~~-~~~-~~Lt~~~V~~i~~~G-- 209 (413)
++.|||+||+||.-|--| .-|.+.-..-+..| ...+..-+|.||.--.- .+. .-+.-+.+..+...|
T Consensus 226 s~akIALVTtGGivPkgnPD~i~ss~a~~~g~Y~I~~~~~l~~~~~~~~HgGYD~~~an~D~N~v~PlD~LreL~~EG~I 305 (349)
T PF07355_consen 226 SKAKIALVTTGGIVPKGNPDRIESSSATKYGKYDISGMDDLSSDDYMTIHGGYDPAYANEDPNRVFPLDRLRELEKEGVI 305 (349)
T ss_pred HHCEEEEEeccCcccCCCCCccCCCCCCCceeeeCcCcCCCCccceEeeccccChhHhccCCCeeeeHHHHHHHHHcCCc
Confidence 567999999999999887 22222110000001 11244555666654432 111 112222333333332
Q ss_pred C----cee---ee--cCC--CCcHHHHHHHHHHhCCcEEEEE
Q 015095 210 G----TIL---RT--SRG--GHDTNKIVDNIEDRGINQVYII 240 (413)
Q Consensus 210 G----s~L---GT--sR~--~~d~~~iv~~l~~~~Id~LivI 240 (413)
| .+. |+ +.. ...-.+|++.|++-++|++++.
T Consensus 306 G~l~~~~yst~G~gt~~~~~~~~g~eIa~~Lk~dgVDAVILT 347 (349)
T PF07355_consen 306 GSLAPYFYSTMGNGTAVANAKRFGPEIAKELKEDGVDAVILT 347 (349)
T ss_pred ccccCeeEEcCCCCccHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 1 112 21 111 1234789999999999998864
No 312
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=21.11 E-value=1.6e+02 Score=26.99 Aligned_cols=56 Identities=25% Similarity=0.217 Sum_probs=32.3
Q ss_pred cCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCC--hhhHHHHHHHHHHhCCcEEEEEe
Q 015095 315 LMGRYSGFISMYATLASRDVDCCLIPESPFYLEG--PGGLFEFIERQLKENGHMVIVVA 371 (413)
Q Consensus 315 vMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~--~~~~~e~i~~r~~~~~~~vIvva 371 (413)
+-|+.-=-+++..+|+. .++++++=|-.-.+|. ...+.+.+.+.+.+++..+|+++
T Consensus 128 lS~G~~qrv~laral~~-~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~s 185 (204)
T cd03250 128 LSGGQKQRISLARAVYS-DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVT 185 (204)
T ss_pred CCHHHHHHHHHHHHHhc-CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 33444445788889998 7999999775444542 12233433333333456677665
No 313
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=21.09 E-value=50 Score=34.29 Aligned_cols=29 Identities=34% Similarity=0.403 Sum_probs=21.2
Q ss_pred CcEEEEEcCCcchHHHHH-HHHHHHHcCCCceeeee
Q 015095 234 INQVYIIGGDGTQKGAAL-IYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 234 Id~LivIGGdgS~~~a~~-L~e~~~~~~~~i~vvgI 268 (413)
.|.+|-+||||||-.|.- +.+ -..|||||
T Consensus 106 aD~VisvGGDGTfL~Aasrv~~------~~~PViGv 135 (395)
T KOG4180|consen 106 ADMVISVGGDGTFLLAASRVID------DSKPVIGV 135 (395)
T ss_pred hhEEEEecCccceeehhhhhhc------cCCceeee
Confidence 478999999999865543 432 24789998
No 314
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=20.94 E-value=2.1e+02 Score=28.45 Aligned_cols=93 Identities=23% Similarity=0.312 Sum_probs=55.6
Q ss_pred CCcEEEEEcCCCCcchHHHHHhhhcCCc---cEEEcCCCCCCCCChhhHHHHHHHHHHhC--CcEEEEEeCCCCcccc--
Q 015095 307 ENGVGIVKLMGRYSGFISMYATLASRDV---DCCLIPESPFYLEGPGGLFEFIERQLKEN--GHMVIVVAEGAGQEFV-- 379 (413)
Q Consensus 307 ~~rv~iVEvMGR~sG~LA~~aaLA~~~a---d~ilIPE~pf~l~~~~~~~e~i~~r~~~~--~~~vIvvaEGa~~~~~-- 379 (413)
+..+.++|+ ..||+...||+-...+ .++|+|+.|. .-.+.|++++++. .+.-|+++--.+..+-
T Consensus 88 ~~~~~i~~~---~~G~v~anAGID~SN~~~g~v~LLP~DPd------~sA~~ir~~l~~~~g~~v~VIItDt~gr~~R~G 158 (243)
T TIGR01916 88 GTPFLITET---RHGHVCANAGIDESNVGNGELLLLPEDPD------ASAEKIRRGLRELTGVDVGVIITDTNGRPFREG 158 (243)
T ss_pred cCCeEEEEe---cCceEEeccccccccCCCCeEEecCCChH------HHHHHHHHHHHHHHCCCEEEEEECCCCCccccC
Confidence 356888887 5789988887764333 3789999883 5667788887763 3444666654331111
Q ss_pred ----c---ccC----CcccccCCCCCcccccHHHHHHHHHH
Q 015095 380 ----A---QSM----PAVDEKDASGNRLLLDIGLWLTQKIK 409 (413)
Q Consensus 380 ----~---~~~----~~~~~~Da~Gn~~l~~vg~~L~~~I~ 409 (413)
+ .-+ .-.+++|.+|+.... .-..++|+|.
T Consensus 159 ~~gvAIG~aG~~~l~d~~G~~D~~G~~L~~-T~~avaDelA 198 (243)
T TIGR01916 159 QVGVAIGAAGLKVLRDWRGEKDLYGRELEV-TEVAVADELA 198 (243)
T ss_pred CCCeeeeccCChHHHhcCCCcCCCCCeeec-cHHHHHHHHH
Confidence 0 000 013567999987642 3345555553
No 315
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.86 E-value=3.9e+02 Score=28.50 Aligned_cols=59 Identities=19% Similarity=0.393 Sum_probs=37.2
Q ss_pred CCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc--CCCceee------eeeccccCCCccccccc
Q 015095 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR--GLQVAVA------GIPKTIDNDIAVIDKSF 283 (413)
Q Consensus 219 ~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~--~~~i~vv------gIPkTIDNDI~gtD~S~ 283 (413)
+.|++.+++.++++ +..+++||-+... +.+++.+. +.++..+ ++|.|-.|-......+.
T Consensus 362 ~~d~~~l~~~l~~~-~~~vi~iG~~~~~-----i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (488)
T PRK03369 362 GASVDALVAEMASR-LVGAVLIGRDRAV-----VAEALSRHAPDVPVVQVVTGEDAGMPATPEVPVACVTDVA 428 (488)
T ss_pred CCCHHHHHHHHhhh-eeEEEEEcCCHHH-----HHHHHHhcCCCCCEEEeccccccccccccccccccccccc
Confidence 56888999888765 8889999877532 33444332 3333333 56777777776655444
No 316
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=20.53 E-value=9.4e+02 Score=24.73 Aligned_cols=106 Identities=14% Similarity=0.180 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHH-HHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHHH
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGA-ALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAH 300 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a-~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i~ 300 (413)
++++-+.+++++.+-++++.+....... ..+.+.+++.++++.++.+| ..+.+.-+++.-+. ++.+.
T Consensus 11 l~~l~~~l~~~g~~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~--------~~e~~k~~~~v~~~----~~~~~ 78 (355)
T cd08197 11 LDSVLGYLPELNADKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVP--------SGEEHKTLSTLSDL----VERAL 78 (355)
T ss_pred HHHHHHHHHhcCCCeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeC--------CCCCCCCHHHHHHH----HHHHH
Confidence 3445555566665555555554443322 33445555555554333332 11222222222222 11111
Q ss_pred HhhhccCCcEEEEEcCCCCcchHHHHHh-hhcCCccEEEcCC
Q 015095 301 VEVESVENGVGIVKLMGRYSGFISMYAT-LASRDVDCCLIPE 341 (413)
Q Consensus 301 ~~A~s~~~rv~iVEvMGR~sG~LA~~aa-LA~~~ad~ilIPE 341 (413)
.. ...+.-+||=+=|+..+-+|-.+| +..++..++.||-
T Consensus 79 ~~--~~dr~~~IIAvGGGsv~D~ak~~A~~~~rgip~I~IPT 118 (355)
T cd08197 79 AL--GATRRSVIVALGGGVVGNIAGLLAALLFRGIRLVHIPT 118 (355)
T ss_pred Hc--CCCCCcEEEEECCcHHHHHHHHHHHHhccCCCEEEecC
Confidence 11 112234566666666666663333 2223566666665
No 317
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=20.49 E-value=36 Score=33.73 Aligned_cols=65 Identities=28% Similarity=0.383 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHhCCc---EEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHH
Q 015095 221 DTNKIVDNIEDRGIN---QVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (413)
Q Consensus 221 d~~~iv~~l~~~~Id---~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~ 291 (413)
.++++++.|.+++++ .|+.+||--...-+--.+.. -.|| |+.+.||-|+- ..+|-|+|--||+|.
T Consensus 14 ~~~~i~~~l~~~~~~R~~~iiaiGGGvv~Dl~GFaAs~-y~RG--i~~i~vPTTLL---a~vDssiGgK~~vN~ 81 (260)
T PF01761_consen 14 TVEKIYDALLEAGLDRDDLIIAIGGGVVGDLAGFAAST-YMRG--IPFIQVPTTLL---AQVDSSIGGKTGVNF 81 (260)
T ss_dssp HHHHHHHHHHHTT--TTEEEEEEESHHHHHHHHHHHHH-BTT----EEEEEE-SHH---HHHTTTSSSEEEEEE
T ss_pred HHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHH-HccC--CceEeccccHH---HHHhcccCCCeeeeC
Confidence 468899999999995 99999997666555444332 2346 67999999973 567888888877775
No 318
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=20.44 E-value=1.4e+02 Score=28.84 Aligned_cols=48 Identities=17% Similarity=0.291 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeecc
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkT 271 (413)
.++.++.+++.+++++++. |-.+.....+.+.++++|++.-+..-|.|
T Consensus 93 ~~~fi~~~~~aG~~giiip--Dl~~ee~~~~~~~~~~~g~~~i~~i~P~T 140 (242)
T cd04724 93 LERFLRDAKEAGVDGLIIP--DLPPEEAEEFREAAKEYGLDLIFLVAPTT 140 (242)
T ss_pred HHHHHHHHHHCCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 5888999999999999885 44566677788888888987545455544
No 319
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=20.38 E-value=7.2e+02 Score=25.20 Aligned_cols=95 Identities=14% Similarity=0.210 Sum_probs=51.3
Q ss_pred EEEEEcCCcch-HHHHHHHHHHHHcCCCceeeeeeccccCCC---ccccc-cc---Cchh-----HHHHHHHHHHH---H
Q 015095 236 QVYIIGGDGTQ-KGAALIYKEVEKRGLQVAVAGIPKTIDNDI---AVIDK-SF---GFDT-----AVEEAQRAINA---A 299 (413)
Q Consensus 236 ~LivIGGdgS~-~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI---~gtD~-S~---GFdT-----Av~~~~~~i~~---i 299 (413)
.++.-||-|-+ --|..+++++++++.++-.++-++-+..++ .+.++ ++ |+.- -+......+.. +
T Consensus 4 i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (352)
T PRK12446 4 IVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGVMDA 83 (352)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHHHHH
Confidence 35566666653 347778888887788888888777777665 12221 22 3221 11111111111 1
Q ss_pred HHhhhccCCcEEEEEcCCCCcchHHHHHhhhcC
Q 015095 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASR 332 (413)
Q Consensus 300 ~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~ 332 (413)
..-.... +--+|=.+|.+.+.-++.+|...+
T Consensus 84 ~~i~~~~--kPdvvi~~Ggy~s~p~~~aa~~~~ 114 (352)
T PRK12446 84 YVRIRKL--KPDVIFSKGGFVSVPVVIGGWLNR 114 (352)
T ss_pred HHHHHhc--CCCEEEecCchhhHHHHHHHHHcC
Confidence 1111222 233555699888888887777764
No 320
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=20.36 E-value=1.7e+02 Score=20.63 Aligned_cols=29 Identities=17% Similarity=0.440 Sum_probs=24.9
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHH
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKG 248 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~ 248 (413)
..+.++++.+++++++.+.|+..+|.+.|
T Consensus 16 ~~l~~~~~~~~~~~~~~~~V~d~~~~~~G 44 (57)
T PF00571_consen 16 DSLEEALEIMRKNGISRLPVVDEDGKLVG 44 (57)
T ss_dssp SBHHHHHHHHHHHTSSEEEEESTTSBEEE
T ss_pred CcHHHHHHHHHHcCCcEEEEEecCCEEEE
Confidence 56899999999999999999988876544
No 321
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=20.16 E-value=2.5e+02 Score=27.41 Aligned_cols=73 Identities=14% Similarity=0.238 Sum_probs=43.4
Q ss_pred eEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcHHHH
Q 015095 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKI 225 (413)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~~i 225 (413)
||||+.. +.-|.++.+++|+...|.. .+. .. +.+++. ..-+.+......++
T Consensus 1 ~v~i~~~-~~~~~~~~~~~gf~~~L~~-~g~-------------~~-~~~~~~-------------~~~a~~d~~~~~~~ 51 (294)
T PF04392_consen 1 KVGILQF-ISHPALDDIVRGFKDGLKE-LGY-------------DE-KNVEIE-------------YKNAEGDPEKLRQI 51 (294)
T ss_dssp EEEEEES-S--HHHHHHHHHHHHHHHH-TT---------------C-CCEEEE-------------EEE-TT-HHHHHHH
T ss_pred CeEEEEE-eccHHHHHHHHHHHHHHHH-cCC-------------cc-ccEEEE-------------EecCCCCHHHHHHH
Confidence 6888886 4688899999999998864 221 11 111111 11112223456788
Q ss_pred HHHHHHhCCcEEEEEcCCcchH
Q 015095 226 VDNIEDRGINQVYIIGGDGTQK 247 (413)
Q Consensus 226 v~~l~~~~Id~LivIGGdgS~~ 247 (413)
++.|...+.|.++.+|..-+..
T Consensus 52 ~~~l~~~~~DlIi~~gt~aa~~ 73 (294)
T PF04392_consen 52 ARKLKAQKPDLIIAIGTPAAQA 73 (294)
T ss_dssp HHHHCCTS-SEEEEESHHHHHH
T ss_pred HHHHhcCCCCEEEEeCcHHHHH
Confidence 8888889999888887665444
No 322
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=20.15 E-value=1.1e+03 Score=25.28 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc--CCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHH
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR--GLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~--~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i 299 (413)
.+.|.+.+++++-+.++|+..--+-.....+..-+++. .+.++|+.|+. ++..+ +++-||+.|++.+.+.+-.-
T Consensus 108 ~~~I~ei~~~~~P~~I~V~tTC~~~lIGdDi~~v~~~~~~~~~~pvi~v~t---~Gf~g-~~~~G~~~a~~al~~~l~~~ 183 (475)
T PRK14478 108 FKAIDEIIEKYAPPAVFVYQTCVVALIGDDIDAVCKRAAEKFGIPVIPVNS---PGFVG-NKNLGNKLAGEALLDHVIGT 183 (475)
T ss_pred HHHHHHHHHhcCCCEEEEeCCChHHHhccCHHHHHHHHHHhhCCCEEEEEC---CCccc-chhhhHHHHHHHHHHHHhcc
Q ss_pred HHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCcEEE-EEeCCCCccc
Q 015095 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVI-VVAEGAGQEF 378 (413)
Q Consensus 300 ~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~~~vI-vvaEGa~~~~ 378 (413)
.......++.|-|+= .|.+. +.++.|++-+++-|.-++ +...+..-+-
T Consensus 184 ~~~~~~~~~~VNiiG----------------------------~~~~~---gd~~elk~lL~~~Gl~v~~~~~~~~s~ee 232 (475)
T PRK14478 184 VEPEDTTPYDINILG----------------------------EYNLA---GELWQVKPLLDRLGIRVVACITGDARYDD 232 (475)
T ss_pred CCccCCCCCeEEEEe----------------------------CCCCC---CCHHHHHHHHHHcCCeEEEEcCCCCCHHH
Q ss_pred ccccCCcccccCCCCCccc-ccHHHHHHHHHHhhhC
Q 015095 379 VAQSMPAVDEKDASGNRLL-LDIGLWLTQKIKIQHT 413 (413)
Q Consensus 379 ~~~~~~~~~~~Da~Gn~~l-~~vg~~L~~~I~~~~~ 413 (413)
+.. --.|.-|+.+ ...+.++++.++++|.
T Consensus 233 i~~------~~~A~lniv~~~~~~~~~A~~L~erfG 262 (475)
T PRK14478 233 VAS------AHRARANMMVCSGAMINLARKMEERYG 262 (475)
T ss_pred HHh------cccCcEEEEEcHHHHHHHHHHHHHHhC
No 323
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=20.04 E-value=6.5e+02 Score=22.64 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=48.3
Q ss_pred eEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCC-CCcHHH
Q 015095 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDTNK 224 (413)
Q Consensus 146 ~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~-~~d~~~ 224 (413)
+||++......|-....++++...+.. ++ .++.-. .... ......
T Consensus 1 ~i~~v~~~~~~~~~~~~~~g~~~~~~~-~g-~~~~~~--------------------------------~~~~~~~~~~~ 46 (264)
T cd06267 1 TIGVIVPDISNPFFAELLRGIEEAARE-AG-YSVLLC--------------------------------NSDEDPEKERE 46 (264)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHH-cC-CEEEEE--------------------------------cCCCCHHHHHH
Confidence 367777666778888888888776643 22 121110 1111 122346
Q ss_pred HHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 225 iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
.++.+...++|++++.+.+.+... .+.+.+.+ ++||.+
T Consensus 47 ~~~~~~~~~~d~iii~~~~~~~~~----~~~~~~~~--ipvv~~ 84 (264)
T cd06267 47 ALELLLSRRVDGIILAPSRLDDEL----LEELAALG--IPVVLV 84 (264)
T ss_pred HHHHHHHcCcCEEEEecCCcchHH----HHHHHHcC--CCEEEe
Confidence 677778889999999888866443 23334445 445554
Done!