Query 015095
Match_columns 413
No_of_seqs 263 out of 1449
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 06:35:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015095.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015095hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hig_A 6-phospho-1-fructokinas 100.0 1E-84 3.6E-89 676.4 26.1 335 67-412 15-361 (487)
2 3hno_A Pyrophosphate-dependent 100.0 1.1E-72 3.7E-77 579.0 25.4 262 144-412 3-286 (419)
3 3o8l_A 6-phosphofructokinase, 100.0 2.7E-73 9.4E-78 616.5 16.7 325 70-399 315-666 (762)
4 3o8o_A 6-phosphofructokinase s 100.0 3.9E-72 1.3E-76 608.0 20.4 326 70-399 305-664 (787)
5 3opy_A 6-phosphofructo-1-kinas 100.0 2.3E-72 7.9E-77 615.7 16.6 326 70-399 510-869 (989)
6 2f48_A Diphosphate--fructose-6 100.0 4.8E-71 1.6E-75 583.0 23.3 286 80-375 11-315 (555)
7 3o8o_B 6-phosphofructokinase s 100.0 8.7E-72 3E-76 605.0 18.2 326 70-399 305-665 (766)
8 3opy_B 6-phosphofructo-1-kinas 100.0 4.8E-72 1.7E-76 614.0 15.6 326 70-399 483-843 (941)
9 1zxx_A 6-phosphofructokinase; 100.0 2.8E-70 9.7E-75 543.8 24.1 242 145-399 2-254 (319)
10 1pfk_A Phosphofructokinase; tr 100.0 3.8E-70 1.3E-74 543.1 23.5 218 145-375 3-226 (320)
11 4a3s_A 6-phosphofructokinase; 100.0 9.2E-69 3.2E-73 533.3 19.6 242 145-399 2-254 (319)
12 3o8l_A 6-phosphofructokinase, 100.0 5.4E-65 1.8E-69 551.7 22.0 229 143-375 14-267 (762)
13 3o8o_B 6-phosphofructokinase s 100.0 5.3E-63 1.8E-67 536.3 27.1 229 144-376 3-258 (766)
14 3o8o_A 6-phosphofructokinase s 100.0 2.2E-63 7.4E-68 539.6 19.0 230 143-376 4-259 (787)
15 3opy_B 6-phosphofructo-1-kinas 100.0 1.9E-62 6.3E-67 538.3 24.5 229 144-376 181-436 (941)
16 3opy_A 6-phosphofructo-1-kinas 100.0 3.7E-62 1.3E-66 535.2 24.5 230 143-376 209-464 (989)
17 2an1_A Putative kinase; struct 94.4 0.049 1.7E-06 52.1 5.8 89 145-269 6-94 (292)
18 2i2c_A Probable inorganic poly 92.5 0.058 2E-06 51.5 2.8 45 223-270 18-69 (272)
19 1z0s_A Probable inorganic poly 91.3 0.071 2.4E-06 51.8 2.0 64 222-301 42-122 (278)
20 3g1w_A Sugar ABC transporter; 83.6 26 0.00088 31.9 16.8 174 144-364 4-186 (305)
21 1yt5_A Inorganic polyphosphate 83.6 0.28 9.5E-06 46.4 0.8 53 232-300 40-94 (258)
22 3l49_A ABC sugar (ribose) tran 77.3 41 0.0014 30.2 14.6 129 143-314 4-132 (291)
23 2qv7_A Diacylglycerol kinase D 75.1 3.9 0.00013 39.6 5.9 53 222-277 69-121 (337)
24 3gbv_A Putative LACI-family tr 75.0 24 0.00083 31.8 11.0 184 143-373 7-210 (304)
25 3pfn_A NAD kinase; structural 74.5 1.6 5.5E-05 43.9 3.0 129 137-301 31-163 (365)
26 2bon_A Lipid kinase; DAG kinas 74.4 9.1 0.00031 37.0 8.3 53 222-277 71-125 (332)
27 1u0t_A Inorganic polyphosphate 73.9 1.6 5.6E-05 42.1 2.8 35 231-270 73-107 (307)
28 3s4y_A Thiamin pyrophosphokina 72.4 18 0.00062 34.0 9.6 100 137-245 13-134 (247)
29 3kjx_A Transcriptional regulat 71.0 16 0.00054 34.4 9.0 85 144-268 68-153 (344)
30 3qk7_A Transcriptional regulat 70.5 63 0.0021 29.3 12.9 42 221-268 53-94 (294)
31 1jq5_A Glycerol dehydrogenase; 70.5 6.2 0.00021 38.8 6.1 51 221-276 74-124 (370)
32 3h5o_A Transcriptional regulat 70.3 57 0.0019 30.4 12.7 174 144-370 62-246 (339)
33 3s40_A Diacylglycerol kinase; 68.9 3.9 0.00013 39.1 4.2 54 220-277 51-104 (304)
34 3dbi_A Sugar-binding transcrip 68.8 58 0.002 30.3 12.4 122 144-314 61-188 (338)
35 3afo_A NADH kinase POS5; alpha 68.4 1.5 5E-05 44.4 1.1 54 232-300 113-169 (388)
36 3k4h_A Putative transcriptiona 67.2 54 0.0019 29.4 11.5 123 143-315 7-139 (292)
37 3m9w_A D-xylose-binding peripl 65.8 80 0.0027 28.8 14.1 178 144-371 2-196 (313)
38 1oj7_A Hypothetical oxidoreduc 64.2 6.4 0.00022 39.3 4.9 55 221-275 94-164 (408)
39 3ox4_A Alcohol dehydrogenase 2 62.5 10 0.00035 37.6 6.0 57 220-276 75-144 (383)
40 3uhj_A Probable glycerol dehyd 60.8 11 0.00036 37.8 5.7 52 220-276 93-144 (387)
41 3e3m_A Transcriptional regulat 59.8 35 0.0012 32.2 9.0 173 145-371 71-258 (355)
42 3iv7_A Alcohol dehydrogenase I 59.6 11 0.00039 37.3 5.6 51 220-276 75-125 (364)
43 1rrm_A Lactaldehyde reductase; 59.5 12 0.0004 37.0 5.7 57 220-276 75-146 (386)
44 3kke_A LACI family transcripti 58.7 1.1E+02 0.0037 27.9 12.0 133 144-326 15-157 (303)
45 3lkb_A Probable branched-chain 57.6 50 0.0017 31.2 9.7 106 158-272 125-234 (392)
46 3hl0_A Maleylacetate reductase 57.5 14 0.00048 36.3 5.9 50 221-276 75-124 (353)
47 3jzd_A Iron-containing alcohol 57.4 12 0.0004 37.1 5.3 47 221-272 77-123 (358)
48 1o2d_A Alcohol dehydrogenase, 56.3 7.1 0.00024 38.5 3.5 52 220-271 85-149 (371)
49 3bfj_A 1,3-propanediol oxidore 56.2 15 0.00051 36.3 5.8 57 220-276 79-148 (387)
50 3l8m_A Probable thiamine pyrop 54.5 32 0.0011 31.5 7.4 69 176-245 22-101 (212)
51 3okf_A 3-dehydroquinate syntha 54.5 4.7 0.00016 40.7 1.9 50 220-272 107-159 (390)
52 3egc_A Putative ribose operon 53.6 1.2E+02 0.0043 27.0 12.1 123 143-314 7-132 (291)
53 3rf7_A Iron-containing alcohol 53.3 14 0.00049 36.7 5.2 57 220-276 93-165 (375)
54 3d8u_A PURR transcriptional re 52.2 1.2E+02 0.0043 26.6 11.1 121 145-315 4-128 (275)
55 1vlj_A NADH-dependent butanol 49.9 15 0.00052 36.6 4.8 57 220-276 88-157 (407)
56 3k9c_A Transcriptional regulat 48.9 1.3E+02 0.0045 27.0 10.7 171 144-371 12-193 (289)
57 3rot_A ABC sugar transporter, 48.7 1.4E+02 0.0046 27.0 10.8 88 144-268 3-92 (297)
58 3h75_A Periplasmic sugar-bindi 48.7 1.7E+02 0.0058 27.1 15.6 29 144-172 3-32 (350)
59 2gru_A 2-deoxy-scyllo-inosose 47.5 7.4 0.00025 38.5 2.0 64 221-290 79-145 (368)
60 8abp_A L-arabinose-binding pro 47.3 1.6E+02 0.0054 26.4 16.2 87 144-268 2-88 (306)
61 1ujn_A Dehydroquinate synthase 46.7 8.3 0.00028 37.8 2.2 50 220-272 68-120 (348)
62 3lm8_A Thiamine pyrophosphokin 46.6 76 0.0026 29.1 8.7 69 177-245 26-105 (222)
63 3tb6_A Arabinose metabolism tr 46.0 1.6E+02 0.0055 26.1 12.7 127 145-315 16-145 (298)
64 3trh_A Phosphoribosylaminoimid 45.6 55 0.0019 29.4 7.2 52 213-271 41-93 (169)
65 3nav_A Tryptophan synthase alp 43.9 1.5E+02 0.005 28.2 10.4 138 222-374 7-161 (271)
66 3gv0_A Transcriptional regulat 43.1 1.8E+02 0.0063 26.0 13.7 122 144-314 8-134 (288)
67 3vnd_A TSA, tryptophan synthas 42.1 1.4E+02 0.0049 28.2 10.0 138 222-374 5-159 (267)
68 3clh_A 3-dehydroquinate syntha 42.1 32 0.0011 33.5 5.6 50 220-272 69-121 (343)
69 1xah_A Sadhqs, 3-dehydroquinat 41.7 27 0.00094 34.0 5.1 50 220-272 74-126 (354)
70 3td9_A Branched chain amino ac 40.3 1.9E+02 0.0065 26.7 10.6 106 157-271 130-239 (366)
71 3ors_A N5-carboxyaminoimidazol 39.8 47 0.0016 29.7 5.8 89 213-327 38-132 (163)
72 3ipc_A ABC transporter, substr 39.6 88 0.003 28.9 8.1 106 157-271 119-228 (356)
73 3ce9_A Glycerol dehydrogenase; 39.2 16 0.00053 35.6 2.8 51 221-277 77-127 (354)
74 3cqj_A L-ribulose-5-phosphate 39.2 1.8E+02 0.0061 26.4 10.1 50 220-269 30-88 (295)
75 2o20_A Catabolite control prot 39.0 1.8E+02 0.0061 26.8 10.2 85 144-268 63-148 (332)
76 2ekc_A AQ_1548, tryptophan syn 38.8 2.4E+02 0.0082 26.1 11.6 141 222-375 4-159 (262)
77 3brq_A HTH-type transcriptiona 38.1 1.2E+02 0.0042 26.9 8.6 123 144-315 19-147 (296)
78 2fqx_A Membrane lipoprotein TM 38.0 2.5E+02 0.0086 26.1 16.9 88 220-316 49-138 (318)
79 1x60_A Sporulation-specific N- 37.1 58 0.002 24.3 5.3 50 213-262 14-72 (79)
80 2fep_A Catabolite control prot 37.0 1.1E+02 0.0036 27.7 8.0 134 144-326 16-160 (289)
81 3bil_A Probable LACI-family tr 37.0 2.3E+02 0.0077 26.5 10.6 124 144-315 66-192 (348)
82 1kq3_A Glycerol dehydrogenase; 37.0 12 0.00042 36.8 1.7 50 221-276 83-132 (376)
83 3o74_A Fructose transport syst 36.8 2.1E+02 0.0073 24.9 15.0 173 145-371 3-188 (272)
84 3fst_A 5,10-methylenetetrahydr 36.0 68 0.0023 31.1 6.8 88 178-269 54-153 (304)
85 1dbq_A Purine repressor; trans 35.4 2.4E+02 0.008 25.0 14.1 122 144-314 7-133 (289)
86 1ta9_A Glycerol dehydrogenase; 35.2 14 0.00048 37.7 1.8 50 221-276 134-183 (450)
87 1uta_A FTSN, MSGA, cell divisi 34.7 58 0.002 24.7 4.9 52 213-264 14-74 (81)
88 3lup_A DEGV family protein; PS 33.9 30 0.001 33.1 3.8 172 143-338 2-195 (285)
89 1vdr_A DHFR, dihydrofolate red 33.9 13 0.00046 32.1 1.3 50 221-277 81-130 (162)
90 3kuu_A Phosphoribosylaminoimid 33.8 65 0.0022 29.1 5.7 52 213-271 47-99 (174)
91 2qip_A Protein of unknown func 33.4 55 0.0019 28.2 5.2 49 220-271 94-144 (165)
92 1usg_A Leucine-specific bindin 33.1 1.5E+02 0.0052 27.0 8.5 63 205-270 162-227 (346)
93 2yxb_A Coenzyme B12-dependent 33.0 1.4E+02 0.0047 25.7 7.7 87 144-245 18-110 (161)
94 3uug_A Multiple sugar-binding 32.9 2.8E+02 0.0095 25.1 13.3 101 144-286 3-107 (330)
95 3apt_A Methylenetetrahydrofola 32.8 32 0.0011 33.3 3.9 88 178-269 44-150 (310)
96 3e61_A Putative transcriptiona 32.5 1.8E+02 0.006 25.7 8.7 119 144-315 8-130 (277)
97 1sg6_A Pentafunctional AROM po 31.4 36 0.0012 33.7 4.1 50 220-272 87-141 (393)
98 1cz3_A Dihydrofolate reductase 31.3 17 0.0006 31.4 1.6 48 220-274 80-129 (168)
99 3gyb_A Transcriptional regulat 31.1 2.7E+02 0.0094 24.5 13.6 168 144-371 5-184 (280)
100 4evq_A Putative ABC transporte 30.7 1.2E+02 0.004 28.2 7.4 63 204-269 174-239 (375)
101 3lp6_A Phosphoribosylaminoimid 30.1 58 0.002 29.4 4.8 54 213-273 42-96 (174)
102 3miz_A Putative transcriptiona 29.7 1.3E+02 0.0044 27.1 7.4 177 144-371 13-205 (301)
103 3eaf_A ABC transporter, substr 29.2 2.4E+02 0.0081 26.5 9.4 111 157-275 122-238 (391)
104 2lnd_A De novo designed protei 29.2 85 0.0029 25.2 5.1 57 205-262 23-79 (112)
105 3nkl_A UDP-D-quinovosamine 4-d 29.0 92 0.0031 25.2 5.6 46 223-270 55-100 (141)
106 2g0t_A Conserved hypothetical 28.7 4.3E+02 0.015 25.9 14.3 134 202-339 136-279 (350)
107 1iv0_A Hypothetical protein; r 28.3 44 0.0015 26.9 3.4 29 248-276 39-67 (98)
108 3o1i_D Periplasmic protein TOR 28.3 2.6E+02 0.009 24.8 9.2 70 143-245 4-75 (304)
109 3ihk_A Thiamin pyrophosphokina 28.3 1.2E+02 0.0043 27.6 6.9 85 148-245 4-100 (218)
110 4af0_A Inosine-5'-monophosphat 28.2 1.1E+02 0.0038 32.3 7.2 102 223-340 310-413 (556)
111 3l6u_A ABC-type sugar transpor 28.1 3.1E+02 0.011 24.2 12.7 88 143-268 7-95 (293)
112 3qbe_A 3-dehydroquinate syntha 27.5 57 0.0019 32.4 4.7 49 221-272 88-139 (368)
113 1mgp_A Hypothetical protein TM 27.2 81 0.0028 30.6 5.7 108 136-255 18-133 (313)
114 2fvy_A D-galactose-binding per 27.0 3.4E+02 0.011 24.1 10.0 87 145-268 3-90 (309)
115 3oow_A Phosphoribosylaminoimid 26.9 53 0.0018 29.4 3.9 53 213-272 40-93 (166)
116 4eyg_A Twin-arginine transloca 26.8 1E+02 0.0035 28.5 6.2 63 204-269 162-230 (368)
117 2h3h_A Sugar ABC transporter, 25.9 3.7E+02 0.013 24.2 11.8 82 223-316 47-132 (313)
118 2nrr_A Uvrabc system protein C 25.7 1.8E+02 0.0063 25.7 7.2 86 219-308 60-153 (159)
119 3lop_A Substrate binding perip 25.3 1.5E+02 0.0051 27.5 7.0 62 205-269 165-229 (364)
120 2h4a_A YRAM (HI1655); perplasm 24.8 79 0.0027 30.2 5.1 64 201-268 142-207 (325)
121 1mio_A Nitrogenase molybdenum 24.7 4.8E+02 0.016 26.9 11.4 143 222-413 123-277 (533)
122 3mjf_A Phosphoribosylamine--gl 24.7 1.5E+02 0.005 29.4 7.2 39 144-190 3-41 (431)
123 2vk2_A YTFQ, ABC transporter p 24.7 3.8E+02 0.013 24.0 10.0 86 144-268 2-89 (306)
124 3fij_A LIN1909 protein; 11172J 24.5 3.1E+02 0.011 25.0 9.0 45 196-244 28-72 (254)
125 3lmz_A Putative sugar isomeras 24.4 2.7E+02 0.0093 24.7 8.4 46 221-266 31-80 (257)
126 3lp8_A Phosphoribosylamine-gly 24.0 3.9E+02 0.013 26.4 10.2 43 140-190 17-59 (442)
127 3huu_A Transcription regulator 23.7 2.3E+02 0.0078 25.5 7.9 85 144-268 22-112 (305)
128 1qpz_A PURA, protein (purine n 23.4 4E+02 0.014 24.4 9.7 122 144-314 58-184 (340)
129 1ccw_A Protein (glutamate muta 23.2 2.9E+02 0.0098 22.9 7.8 22 222-243 71-93 (137)
130 1tjy_A Sugar transport protein 23.2 4.3E+02 0.015 24.0 9.8 101 145-287 4-109 (316)
131 3g85_A Transcriptional regulat 23.1 2.2E+02 0.0074 25.3 7.5 30 143-172 10-40 (289)
132 3hcw_A Maltose operon transcri 22.3 2.8E+02 0.0095 24.9 8.1 78 222-315 57-139 (295)
133 3qyf_A Crispr-associated prote 22.3 1.9E+02 0.0066 28.4 7.3 112 221-342 75-195 (324)
134 3jr7_A Uncharacterized EGV fam 22.3 2.3E+02 0.0079 27.0 7.8 128 145-296 20-154 (298)
135 1pzx_A Hypothetical protein AP 22.2 2E+02 0.0068 27.2 7.3 61 195-257 43-108 (289)
136 3clk_A Transcription regulator 22.0 4.2E+02 0.014 23.5 11.4 123 144-314 8-132 (290)
137 2pn1_A Carbamoylphosphate synt 21.7 4.7E+02 0.016 23.9 10.1 19 221-239 60-78 (331)
138 2nrt_A Uvrabc system protein C 21.7 2.8E+02 0.0095 25.7 7.9 86 219-308 65-158 (220)
139 2re1_A Aspartokinase, alpha an 21.6 55 0.0019 28.2 3.0 90 248-340 39-138 (167)
140 3jtw_A Dihydrofolate reductase 21.5 26 0.00088 30.7 0.8 46 220-272 96-143 (178)
141 2qul_A D-tagatose 3-epimerase; 21.5 4.3E+02 0.015 23.4 9.3 47 220-266 17-66 (290)
142 3q12_A Pantoate--beta-alanine 21.1 1.2E+02 0.0042 29.3 5.5 31 307-338 24-55 (287)
143 1o7j_A L-asparaginase; atomic 21.0 4.8E+02 0.016 25.2 9.9 59 220-280 68-130 (327)
144 3u0h_A Xylose isomerase domain 21.0 65 0.0022 28.9 3.5 49 221-269 17-69 (281)
145 3gh1_A Predicted nucleotide-bi 21.0 2.5E+02 0.0087 28.9 8.1 25 230-254 245-269 (462)
146 2qru_A Uncharacterized protein 20.9 2.1E+02 0.0071 25.5 6.9 42 284-329 73-115 (274)
147 1o4v_A Phosphoribosylaminoimid 20.7 69 0.0024 29.1 3.4 54 213-273 48-102 (183)
148 3mel_A Thiamin pyrophosphokina 20.4 1.5E+02 0.0051 27.1 5.8 89 148-245 4-104 (222)
149 2gd9_A Hypothetical protein YY 20.4 33 0.0011 30.0 1.2 48 220-274 105-154 (189)
150 3snr_A Extracellular ligand-bi 20.3 2.6E+02 0.009 25.4 7.6 64 204-270 158-224 (362)
151 3hut_A Putative branched-chain 20.2 2.3E+02 0.0078 26.0 7.2 63 205-270 163-228 (358)
152 2wlt_A L-asparaginase; hydrola 20.1 4.7E+02 0.016 25.3 9.6 60 219-280 67-130 (332)
No 1
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=100.00 E-value=1e-84 Score=676.39 Aligned_cols=335 Identities=40% Similarity=0.658 Sum_probs=301.8
Q ss_pred CCCCcccccccchhhcCCCC--CCCCCCCCCCcccccccccccccChHHHHHHHhccCC-------CCcccccccCCccc
Q 015095 67 HNDGFVLEDVPHLTNFLPDL--PSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-------PRGVHFRRAGPREK 137 (413)
Q Consensus 67 ~~~~~~~eav~~l~~~~p~~--p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-------~r~~~F~~agpr~~ 137 (413)
..-.+.++.|+.+.-..|.+ |++++||..|.. ...||.+++.|+..+....+. .....|+++|||++
T Consensus 15 ~~~~~~~~~~~~~~~~i~~lg~~~~~~p~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~ 90 (487)
T 2hig_A 15 KAHRAMLNSVTQEDLKVDRLPGADYPNPSKKYSS----RTEFRDKTDYIMYNPRPRDEPSSENPVSVSPLLCELAAARSR 90 (487)
T ss_dssp ECTTCSCSSCCTTTTCCEECSCCCEECTTCCGGG----GGGSBSSCCEEESCCCBCC-----CCBBSCCCEEEECCCBSE
T ss_pred ccccccccCCCccccccCcCCCCCCCCcccccCC----CCeeeCCCCEEEEeeeccCCCccccccccchHHHHHcCCcce
Confidence 33567889999886666766 778999977655 588999999998765332221 12347999999999
Q ss_pred cccCCCCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccC---CCeeeCChhhHhhhhhcCCceee
Q 015095 138 VYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS---KNTLTLSPKVVNDIHKRGGTILR 214 (413)
Q Consensus 138 ~~~~~~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~---~~~~~Lt~~~V~~i~~~GGs~LG 214 (413)
+||+++.+||||+||||||||||++||++|+++...|+..+||||++||+||++ +++++|+|+.|++|+++|||+||
T Consensus 91 i~f~~~~~rIgIltsGGdaPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~~~GGTiLG 170 (487)
T 2hig_A 91 IHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILG 170 (487)
T ss_dssp ESSCGGGCEEEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSSCSSC
T ss_pred eeecCCCcEEEEEecCCCcchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCCEEECCHHHHHHHHhCCCCeec
Confidence 999999999999999999999999999999998766776799999999999964 69999999999999999999999
Q ss_pred ecCCCCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHH
Q 015095 215 TSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQR 294 (413)
Q Consensus 215 TsR~~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ 294 (413)
|+|++.+.++++++|++++||+||+||||||+++|++|++++++++++|+||||||||||||++||+|||||||++++++
T Consensus 171 TsR~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~GFdTAv~~~~e 250 (487)
T 2hig_A 171 SSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQ 250 (487)
T ss_dssp CCCSCCCHHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCcEEEEEeCCC
Q 015095 295 AINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGA 374 (413)
Q Consensus 295 ~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~~~vIvvaEGa 374 (413)
+|++++++|.|+++||||||+|||+|||||+++|||+++||+|||||.||+++ +++++|++|+++++|++||||||+
T Consensus 251 aId~i~~tA~Sh~~rv~vVEVMGR~aG~LAl~agLA~g~ad~ilIPE~p~~l~---~i~~~i~~r~~~k~~~IIvVaEGa 327 (487)
T 2hig_A 251 AIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQ---EVMSLLERRFCHSRSCVIIVAEGF 327 (487)
T ss_dssp HHHHHHHHHHTSTTEEEEEEECCSSCCHHHHHHHHHHTCCSEEECTTSCCCHH---HHHHHHHHHTTSCSEEEEEEETTT
T ss_pred HHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHhhCCCCEEEeCCCCCCHH---HHHHHHHHHHhcCCcEEEEEeCCC
Confidence 99999999999988999999999999999999999993399999999999987 899999999988899999999999
Q ss_pred CcccccccCCcccccCCCCCcccccHHHHHHHHHHhhh
Q 015095 375 GQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKIQH 412 (413)
Q Consensus 375 ~~~~~~~~~~~~~~~Da~Gn~~l~~vg~~L~~~I~~~~ 412 (413)
++.+... ...+|++||++++++|.||+++|+++|
T Consensus 328 g~~~~~~----~~~~Da~G~~~l~~i~~~l~~~i~~~~ 361 (487)
T 2hig_A 328 GQDWGRG----SGGYDASGNKKLIDIGVILTEKVKAFL 361 (487)
T ss_dssp TGGGCCC------CBCTTSCBCCCCHHHHHHHHHHHHH
T ss_pred ccccccc----ccccccccCcchhHHHHHHHHHHHHHH
Confidence 8765533 235799999999999999999999886
No 2
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=100.00 E-value=1.1e-72 Score=578.97 Aligned_cols=262 Identities=20% Similarity=0.292 Sum_probs=225.1
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCC-CcEEEEEcccchhccCCCeeeC---ChhhHhhhhhcCCceeeecCCC
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYG-VDEILGIEGGYRGFYSKNTLTL---SPKVVNDIHKRGGTILRTSRGG 219 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~-~~~V~Gi~~G~~GL~~~~~~~L---t~~~V~~i~~~GGs~LGTsR~~ 219 (413)
..||+|+||||||||||++||++|+.+.+... ..+||||++||+||+++++++| +|..+++|+++|||+|||||++
T Consensus 3 ~kni~VltsGGdapGmNa~Ir~vv~~a~~~g~~~~~V~Gi~~G~~GLl~~~~~~l~~~~~~~v~~i~~~GGtiLGSsR~~ 82 (419)
T 3hno_A 3 AKNAFYAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAISALRYTPSGAFGSCRYK 82 (419)
T ss_dssp CCEEEEEECSSCCSSHHHHHHHHHHHHHHHCSSCCCEEEETTTHHHHHTTCEEEGGGSCHHHHHHGGGCCSCTTCCCCCC
T ss_pred CceEEEEccCCChHHHHHHHHHHHHHHHHcCCCCcEEEEEeCChHHhCCCCcccCccccHHHHHHHHcCCCceecCCCCC
Confidence 35999999999999999999999998865332 3399999999999999999988 5558999999999999999975
Q ss_pred C--------cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHH
Q 015095 220 H--------DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (413)
Q Consensus 220 ~--------d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~ 291 (413)
. ++++++++|++++||+||+||||||+++|++|++++++++++++|||||||||||+++||+|||||||+++
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD~t~GFdTA~~~ 162 (419)
T 3hno_A 83 LKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAKY 162 (419)
T ss_dssp ------CHHHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSCTTHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCCCCCCchHHHHH
Confidence 3 47899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCC---cEEEEEcCCCCcchHHHHHhhhc----CCccEEEcCCCCCCCCChhhHHHHHHHHHHhCC
Q 015095 292 AQRAINAAHVEVESVEN---GVGIVKLMGRYSGFISMYATLAS----RDVDCCLIPESPFYLEGPGGLFEFIERQLKENG 364 (413)
Q Consensus 292 ~~~~i~~i~~~A~s~~~---rv~iVEvMGR~sG~LA~~aaLA~----~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~ 364 (413)
++++|+++..++.++++ ||||||+|||+|||||+++|||+ ++||+|||||.||+++ ++++.|++++++++
T Consensus 163 ~~~~i~~~~~d~~ss~~sh~rv~iVEvMGR~aG~lAl~aglA~~~~~~gad~ilIPE~~f~~~---~~~~~i~~~~~~~~ 239 (419)
T 3hno_A 163 IAVSTLEASFDVASMSATSTKVFVLEVMGRHAGWIAAAGGLASSPEREIPVVILFPEISFDKQ---KFLAKVDSCVKKFG 239 (419)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCEEEEEECCSSCCHHHHGGGGGCCSSSCCCEEEECTTSCCCHH---HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhccCCCcEEEEEcCCcChhHHHHHHHHhcccCCCCceEEEeCCCCCCHH---HHHHHHHHHHHhCC
Confidence 99999998666555544 89999999999999999999994 2799999999999987 89999999999889
Q ss_pred cEEEEEeCCCCc---ccccccCCcccccCCCCCcccccHHHHHHHHHHhhh
Q 015095 365 HMVIVVAEGAGQ---EFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIKIQH 412 (413)
Q Consensus 365 ~~vIvvaEGa~~---~~~~~~~~~~~~~Da~Gn~~l~~vg~~L~~~I~~~~ 412 (413)
|++||||||+.+ +++.+ ...+|++||++|++++.+|+++|++++
T Consensus 240 ~~iIvVaEG~~~~~g~~i~~----~~~~D~~G~~~l~gi~~~la~~i~~~~ 286 (419)
T 3hno_A 240 YCSVVVSEGVKGDDGKFLSD----QGVRDAFGHAQLGGVAPVVASMVKEGL 286 (419)
T ss_dssp CEEEEEETTCCCSSSCC-------------------CCSHHHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCcchhc----ccccccccCcccCcHHHHHHHHHHHHh
Confidence 999999999975 33332 246899999999999999999999986
No 3
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=2.7e-73 Score=616.46 Aligned_cols=325 Identities=22% Similarity=0.256 Sum_probs=286.5
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC-----CCcccccccC--------Ccc
Q 015095 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG--------PRE 136 (413)
Q Consensus 70 ~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag--------pr~ 136 (413)
++..+||.++++..|+++.+++.+++|+.++.|++++++.++.|..++ .+++| +|+.+|.+++ ++.
T Consensus 315 ~lG~~AV~~~~~g~~~~~~~~v~~~~~~i~~~Pl~e~~~~~k~v~~~~-~~~~~~~a~~~rg~~f~~~~~~~~~~~~~~~ 393 (762)
T 3o8l_A 315 RMGVEAVMALLEGTPDTPACVVSLSGNQAVRLPLMECVQVTKDVTKAM-DEKRFDEAMKLRGRSFMNNWEVYKLLAHIRP 393 (762)
T ss_dssp HHHHHHHHHHHTCCTTSCCEEEEEETTEEEEEEHHHHHHHHHHHHHHH-HSSCHHHHHHHHCTHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHcCCCCCceEEEEEECCEEEEEEHHHHHhccCCCChhh-ccchHHHHHHhhCchHHHHHHHHHHhcCCCC
Confidence 567999999999999999999999999999999999999999999988 46666 5888998765 211
Q ss_pred ccccCCCCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeec
Q 015095 137 KVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTS 216 (413)
Q Consensus 137 ~~~~~~~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTs 216 (413)
... ..+++||||+||||||||||++||++|+++.. .+++||||++||+||+++++++|+|..|++|+++|||+|||+
T Consensus 394 ~~~-~~~~~~IgIltsGGdapGmNaaIravv~~~~~--~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGTs 470 (762)
T 3o8l_A 394 PAP-KSGSYTVAVMNVGAPAAGMNAAVRSTVRIGLI--QGNRVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGGSKLGSK 470 (762)
T ss_dssp CCC-CSSCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEESSTTHHHHHTCEEECCTTTTSSCTTCCSCSSCEE
T ss_pred ccc-cccCCEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEeccccccccCCEEECCHHHhhhHHhCCCceeecC
Confidence 111 14568999999999999999999999998863 357999999999999999999999999999999999999999
Q ss_pred CCC--CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcC-CCceeeeeeccccCCCcccccccCchhHHHHHH
Q 015095 217 RGG--HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG-LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQ 293 (413)
Q Consensus 217 R~~--~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~-~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~ 293 (413)
|+. +++++++++|++++||+||+||||||+++|++|++++++++ ++|+|||||||||||+++||+|||||||+++++
T Consensus 471 R~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~TiGfdTA~~~~~ 550 (762)
T 3o8l_A 471 RTLPKKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTIC 550 (762)
T ss_dssp CCCSGGGHHHHHHHHHHTTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCSCCBTHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCcCCCChHHHHHHHH
Confidence 985 47999999999999999999999999999999999988874 689999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhC-CcEEEEEeC
Q 015095 294 RAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN-GHMVIVVAE 372 (413)
Q Consensus 294 ~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~-~~~vIvvaE 372 (413)
++|++++++|.++++||||||+|||+|||||++++||+ +||+|||||.||+++++.+.++++.+|++++ ++++|||||
T Consensus 551 ~aid~i~~tA~ssh~rv~vVEvMGR~aG~lAl~aglA~-gad~ilIPE~~~~l~~~~~~i~~~~~r~~~~~~~~iVvvaE 629 (762)
T 3o8l_A 551 TTCDRIKQSAAGTKRRVFIIETMGGYCGYLATMAGLAA-GADAAYIFEEPFTIRDLQANVEHLVQKMKTTVKRGLVLRNE 629 (762)
T ss_dssp HHHHHHTTTTCSSSCEEEEEEECSTTCCHHHHHHHHHT-TCSEEECSSSCCCHHHHHHHHHHHHHHHTSSCSEEEEEEET
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCCcchhHHHHHHHHhh-CCCEEEECCCCCCHHHHHHHHHHHHHHHhcCCCceEEEEEC
Confidence 99999999999777899999999999999999999999 7999999999999996666677788888764 679999999
Q ss_pred CCCcccccccCC----c------ccccCCCCCccccc
Q 015095 373 GAGQEFVAQSMP----A------VDEKDASGNRLLLD 399 (413)
Q Consensus 373 Ga~~~~~~~~~~----~------~~~~Da~Gn~~l~~ 399 (413)
|+...+.++.+. + +.+...-||+|.||
T Consensus 630 ga~~~~~~~~~~~~~~~~~~~~~d~R~tvLGH~QRGG 666 (762)
T 3o8l_A 630 KCNENYTTDFIFNLYSEEGKGIFDSRKNVLGHMQQGG 666 (762)
T ss_dssp TSCSSSCHHHHHHHHHHHTTTTCEEEEEECCCCCTTS
T ss_pred CCCccchHHHHHHHHHhhccCCceEEEeeCchhhCCC
Confidence 997654443221 1 11224459999998
No 4
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-72 Score=608.01 Aligned_cols=326 Identities=18% Similarity=0.216 Sum_probs=280.9
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC-----CCcccccccC--------Cc-
Q 015095 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG--------PR- 135 (413)
Q Consensus 70 ~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag--------pr- 135 (413)
++.++||.+|++..+++|.+++.+++|+.++.|++++|..++.|.++| .+|+| +|+++|.+++ ++
T Consensus 305 rlG~~AV~~l~~g~~~~~~~mVg~~~~~i~~~pl~~~~~~~k~v~~~~-~~~~~~~a~~lr~~~f~~~~~~~~~~~~~~~ 383 (787)
T 3o8o_A 305 LQGVDAVKAVLEFTPETPSPLIGILENKIIRMPLVESVKLTKSVATAI-ENKDFDKAISLRDTEFIELYENFLSTTVKDD 383 (787)
T ss_dssp HHHHHHHHHHHTCCSSCCCEEEEESSSSEEEEEHHHHHHHHHHHHHHH-HTTCHHHHHHTSCTTHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhh-hcCCHHHHHhccCHHHHHHHHHHHHhccCCC
Confidence 578999999999999999999999999999999999999999999999 67887 7999999987 11
Q ss_pred cccccC-CCCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhcc-CCCeeeCChhhHhhhhhcCCcee
Q 015095 136 EKVYFK-SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFY-SKNTLTLSPKVVNDIHKRGGTIL 213 (413)
Q Consensus 136 ~~~~~~-~~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~-~~~~~~Lt~~~V~~i~~~GGs~L 213 (413)
.+...+ .+..||||+||||||||||++||++|+++.. .+++||||++||+||+ ++++++|+|..|++|+++|||+|
T Consensus 384 ~~~~~~~~~~~~IgIltsGGdapGmNaaIravv~~a~~--~g~~v~Gi~~G~~GL~~~~~~~~L~~~~v~~i~~~GGt~L 461 (787)
T 3o8o_A 384 GSELLPVSDRLNIGIVHVGAPSAALNAATRAATLYCLS--HGHKPYAIMNGFSGLIQTGEVKELSWIDVENWHNLGGSEI 461 (787)
T ss_dssp SCSCCCSSCCCEEEEEEESSCCSSHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSCTT
T ss_pred ccccCCcccCcEEEEEccCCCCHHHHHHHHHHHHHHHH--CCCEEEEEccChhhhCCCCCEEECCHHHHhhhhcCCCcee
Confidence 111122 3468999999999999999999999998763 3579999999999999 89999999999999999999999
Q ss_pred eecCCC--CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcC-CCceeeeeeccccCCCcccccccCchhHHH
Q 015095 214 RTSRGG--HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG-LQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (413)
Q Consensus 214 GTsR~~--~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~-~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~ 290 (413)
||+|+. +++++++++|++++||+||+||||||+++|++|++++++++ +.|+||||||||||||++||+|||||||++
T Consensus 462 GTsR~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vIgiPkTIDNDl~gTD~t~GfdTA~~ 541 (787)
T 3o8o_A 462 GTNRSVASEDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCLN 541 (787)
T ss_dssp CCBCCCGGGCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTTCGGGGSCEEEEEBCTTCCCTTCSCCBTHHHHHH
T ss_pred ccCCCCchhhHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCceeecccccccCCCCCcCCCCchHHHH
Confidence 999985 37899999999999999999999999999999999876553 579999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh---C--Cc
Q 015095 291 EAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE---N--GH 365 (413)
Q Consensus 291 ~~~~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~---~--~~ 365 (413)
+++++|++++++|.|+++||||||+|||+|||||+++|||+ +||+|||||+||+++++.+.+++++++++. + .+
T Consensus 542 ~~~eaid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~-ga~~iliPE~~~~~~~~~~~i~~~~~~~~~~~g~~~~~ 620 (787)
T 3o8o_A 542 ALVNYTDDIKQSASATRRRVFVCEVQGGHSGYIASFTGLIT-GAVSVYTPEKKIDLASIREDITLLKENFRHDKGENRNG 620 (787)
T ss_dssp HHHHHHHHHHHHHHHHSSEEEEEEECCTTCTHHHHHHHHTT-TCSEEECSSSCCCHHHHHHHHHHHHHHHHHCCSCSSCC
T ss_pred HHHHHHHHHHHHhhccCCcEEEEEeCCCCccHHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCc
Confidence 99999999999999877899999999999999999999999 899999999999998544444555555642 2 34
Q ss_pred EEEEEeCCCCcccc----cccCCcc------cccCCCCCccccc
Q 015095 366 MVIVVAEGAGQEFV----AQSMPAV------DEKDASGNRLLLD 399 (413)
Q Consensus 366 ~vIvvaEGa~~~~~----~~~~~~~------~~~Da~Gn~~l~~ 399 (413)
.+|+++||+...+. .+.+++. .+...-||.|.||
T Consensus 621 ~iivvaEg~~~~~~~~~la~~i~~~~~~~~e~R~tvLGhiQRGG 664 (787)
T 3o8o_A 621 KLLVRNEQASSVYSTQLLADIISEASKGKFGVRTAIPGHVQQGG 664 (787)
T ss_dssp EEEEEETTSCSSSCHHHHHHHHHHHHTTSSEEEEEBCGGGGGCS
T ss_pred eEEEEeCCccCCCCHHHHHHHHHHHhCCCceeEEecccccccCC
Confidence 89999999864332 2222211 1234459999988
No 5
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=2.3e-72 Score=615.67 Aligned_cols=326 Identities=18% Similarity=0.241 Sum_probs=281.0
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC-----CCcccccccC--------Ccc
Q 015095 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG--------PRE 136 (413)
Q Consensus 70 ~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag--------pr~ 136 (413)
++.++||.++++..++++.+++.+.+|+.++.|++++|..++.|.++| .+|+| +|+++|.+++ ++.
T Consensus 510 rlG~~AV~~l~~g~~~~~g~mVgl~~~~iv~vPl~e~v~~~k~V~~a~-~~k~f~~a~~lr~~~F~~~~~~~~~~~~~~~ 588 (989)
T 3opy_A 510 VQGVDAVRAVLESTPAIPSPVISILENKIVRQPLVESVAQTKTVSAAI-EAKDFDKALQLRDQEFATSYENFLSVSKYDD 588 (989)
T ss_dssp HHHHHHHHHHHTCCTTSCCEEEEESSSSEEEEEHHHHHHHHHHHHHHH-HTTCHHHHHHTSCHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhh-hccCHHHHHhccChHHHHHHHHHHHhccCCC
Confidence 578999999999999999999999999999999999999999999999 67887 7999999977 111
Q ss_pred -cccc-CCCCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhcc-CCCeeeCChhhHhhhhhcCCcee
Q 015095 137 -KVYF-KSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFY-SKNTLTLSPKVVNDIHKRGGTIL 213 (413)
Q Consensus 137 -~~~~-~~~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~-~~~~~~Lt~~~V~~i~~~GGs~L 213 (413)
+... +.+++||||+||||||||||++||++|+++.. .+++||||++||+||+ ++++++|+|..|++|+++|||+|
T Consensus 589 ~~~~~p~~~~~rIgIltsGGdaPGmNAaIravV~~a~~--~g~~V~Gi~~G~~GLl~~~~~~~L~~~~V~~i~~~GGTiL 666 (989)
T 3opy_A 589 GSYLVPESSRLNIAIIHVGAPTSALNPATRVATLNSLA--KGHRVFAIRNGFAGLIRHGAVRELNWIDVEDWHNTGGSEI 666 (989)
T ss_dssp SSSCCCGGGCCEEEEEEESSCCTTHHHHHHHHHHHHHH--TTCEEEEETTHHHHHHHHCCEEEECTTTTTTTTTCCSCSS
T ss_pred ccccCCccCCceEEEEecCCCCHHHHHHHHHHHHHHHH--CCCEEEEEccChhhhcCCCcEEECCHHHhhCHhhCCCcEe
Confidence 1111 23468999999999999999999999998763 4589999999999999 99999999999999999999999
Q ss_pred eecCCC--CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcC-CCceeeeeeccccCCCcccccccCchhHHH
Q 015095 214 RTSRGG--HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG-LQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (413)
Q Consensus 214 GTsR~~--~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~-~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~ 290 (413)
||+|+. +++++++++|++++||+||+||||||+++|++|++++.+++ +.|+||||||||||||++||+|||||||+|
T Consensus 667 GTsR~~~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gTD~TiGFdTAvn 746 (989)
T 3opy_A 667 GTNRSLPSDDMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLN 746 (989)
T ss_dssp CCBCCCGGGGHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHHH
T ss_pred ccCCCCchhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhCCCcCCcEEeccccccCCCCCCcCCCChHHHHH
Confidence 999985 47899999999999999999999999999999998766553 579999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-----CCc
Q 015095 291 EAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-----NGH 365 (413)
Q Consensus 291 ~~~~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~-----~~~ 365 (413)
+++++|++++++|.|+++||||||+|||+|||||+++|||+ +||+|||||+||+++.+.+.+++++++++. +.+
T Consensus 747 ~~~eaId~i~~tA~ssh~RvfIVEVMGR~aG~LAl~agLA~-GAd~ilIPE~~f~l~~l~~~i~~l~~~~~~~~g~~~~~ 825 (989)
T 3opy_A 747 TLSGYCDAVKQSASASRRRTFVVEVQGGYSGYLASYAGLIT-GALAVYTPENPINLQTVQEDIELLTRTYEEDDGKNRSG 825 (989)
T ss_dssp HHHHHHHHHHHHTC-CCCSEEEEEECCTTCSHHHHHHHHHH-TCSCEECTTSCCCHHHHHHHHHHHHHHHTTCC---CCC
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCcchhHHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999999999877899999999999999999999999 899999999999998544445555566642 236
Q ss_pred EEEEEeCCCCcccc----cccCCcc------cccCCCCCccccc
Q 015095 366 MVIVVAEGAGQEFV----AQSMPAV------DEKDASGNRLLLD 399 (413)
Q Consensus 366 ~vIvvaEGa~~~~~----~~~~~~~------~~~Da~Gn~~l~~ 399 (413)
++||||||+...+. ++.+++. .+.-.-||+|.||
T Consensus 826 ~IIvvaEga~~~~~~~~la~~i~e~~~~~~e~R~tvLGHiQRGG 869 (989)
T 3opy_A 826 KIFIHNEKASKVYTTDLIAAIIGEAGKGRFESRTAVPGHVQQGK 869 (989)
T ss_dssp EEEEEESSSCSSSCHHHHHHHHHHTTTTTSCEEEECCGGGGGCS
T ss_pred eEEEEeCCCcCCCCHHHHHHHHHHhcCCCceeEecccccccCCC
Confidence 89999999865433 3322221 1223449999998
No 6
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=100.00 E-value=4.8e-71 Score=583.00 Aligned_cols=286 Identities=24% Similarity=0.396 Sum_probs=238.0
Q ss_pred hhcCCCCCCCCCCCCCCc-ccccccccccccChHHHHHHHhccCCC-----CcccccccCCccccccCCCCeeEEEEccC
Q 015095 80 TNFLPDLPSYPNPLKKSQ-AYAVVKQTFVSPEDAVAQNIVIQKDSP-----RGVHFRRAGPREKVYFKSDEVRACIVTCG 153 (413)
Q Consensus 80 ~~~~p~~p~~~~~l~~n~-~~~~~~~~~V~~t~~V~~~~~~~~~~~-----r~~~F~~agpr~~~~~~~~~~~iaIvtsG 153 (413)
++|.|.+|.. |++-. .++ ......+..+...-...+.|| +-.+|.++.++. .+.+..||||+|||
T Consensus 11 ~~~~p~lp~~---l~~~~~~~~---~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~~---~~~~~~~igIltsG 81 (555)
T 2f48_A 11 QKYIPKLPNI---LKKDFNNIS---LVYGENTEAIQDRQALKEFFKNTYGLPIISFTEGESSL---SFSKALNIGIILSG 81 (555)
T ss_dssp TTCCCCCCGG---GGSCGGGEE---EEECCCCCCSSCHHHHHHHTTTTTTCCCEEEEESCCCC---SCCSCCEEEEEEBS
T ss_pred hcCCCCCCHH---HhCCcccee---eecCCcccCccCHHHHHHhCccccCCCcEEEecCCccc---ccCCCcEEEEECcC
Confidence 3688999886 55410 122 233333333333222233343 456687765531 13456899999999
Q ss_pred CCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCC-ceeeecCCCC----cHHHHHHH
Q 015095 154 GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGG-TILRTSRGGH----DTNKIVDN 228 (413)
Q Consensus 154 G~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GG-s~LGTsR~~~----d~~~iv~~ 228 (413)
|||||||++||++++++...+++.+||||++||+||+++++++|+|+.|++|+++|| |+|||+|++. ++++++++
T Consensus 82 GdaPGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGstiLGssR~~~~~~e~~~~~~~~ 161 (555)
T 2f48_A 82 GPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFV 161 (555)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCCCCSHHHHHHHHHH
T ss_pred CCcHhHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCEEECCHHHHHHHHhCCCCcCCCcCCCCCCCHHHHHHHHHH
Confidence 999999999999999976667889999999999999999999999999999999999 7999999853 47899999
Q ss_pred HHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCccc--ccccCchhHHHHHHHHHHHHHHhhhcc
Q 015095 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDTAVEEAQRAINAAHVEVESV 306 (413)
Q Consensus 229 l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gt--D~S~GFdTAv~~~~~~i~~i~~~A~s~ 306 (413)
|++++||+||+||||||+++|++|+++++++++.|+|||||||||||+++| |+|||||||+++++++|++++.+|.|+
T Consensus 162 l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDNDl~~t~id~tiGFdTA~~~~~~aId~i~~da~s~ 241 (555)
T 2f48_A 162 AKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMST 241 (555)
T ss_dssp HHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcCCCCCChhHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999887 999999999999999999999999999
Q ss_pred CCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCC----CCCCCh-hhHHHHHHHHHHh-CCcEEEEEeCCCC
Q 015095 307 ENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESP----FYLEGP-GGLFEFIERQLKE-NGHMVIVVAEGAG 375 (413)
Q Consensus 307 ~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~p----f~l~~~-~~~~e~i~~r~~~-~~~~vIvvaEGa~ 375 (413)
++||||||+|||+|||||+++|||+ +||+|||||+| +++++. ..+++.|++|.++ ++|+|||||||+.
T Consensus 242 ~~rv~iVEvMGR~aG~lAl~a~LA~-gad~ilIPE~~~~~~~~L~~~~~~i~~~i~~r~~~gk~~~IIvVaEG~~ 315 (555)
T 2f48_A 242 KKYWHFVKLMGRSASHVALECALKT-HPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGLI 315 (555)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH-CCSEECCHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEETTGG
T ss_pred CCcEEEEEeCCcCHHHHHHHHHhhc-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCCc
Confidence 8899999999999999999999999 79999999986 444321 3445556656544 6899999999995
No 7
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-72 Score=605.00 Aligned_cols=326 Identities=21% Similarity=0.237 Sum_probs=278.7
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC-----CCcccccccC--------Cc-
Q 015095 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG--------PR- 135 (413)
Q Consensus 70 ~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag--------pr- 135 (413)
++.++||.+|++..+++|.+++.+++|+.+++|++++|..++.|.++| .+|+| +|+++|.+++ ++
T Consensus 305 ~~G~~AV~~~~~g~~~~~~~mv~~~~~~i~~~pl~~~~~~~k~v~~~~-~~~~~~~a~~lr~~~f~~~~~~~~~~~~~~~ 383 (766)
T 3o8o_B 305 LQGLEAVNAVLESTPDTPSPLIAVNENKIVRKPLMESVKLTKAVAEAI-QAKDFKRAMSLRDTEFIEHLNNFMAINSADH 383 (766)
T ss_dssp HHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHH-HTTCHHHHHHHSCTTHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCccHHHH-hcCCHHHHHHccCHHHHHHHHHHHHhccCCc
Confidence 578999999999999999999999999999999999999999999999 67887 6999999987 11
Q ss_pred cccccC-CCCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccC-CCeeeCChhhHhhhhhcCCcee
Q 015095 136 EKVYFK-SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS-KNTLTLSPKVVNDIHKRGGTIL 213 (413)
Q Consensus 136 ~~~~~~-~~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~-~~~~~Lt~~~V~~i~~~GGs~L 213 (413)
.+...+ .+..||||+||||||||||++||++|+++.. .+++||||++||+||++ +++.+|+|.+|++|+++|||+|
T Consensus 384 ~~~~~~~~~~~~IgIltsGGdapGmNaaIravv~~a~~--~g~~v~Gi~~G~~GL~~~~~~~~l~~~~v~~i~~~GGt~L 461 (766)
T 3o8o_B 384 NEPKLPKDKRLKIAIVNVGAPAGGINSAVYSMATYCMS--QGHRPYAIYNGWSGLARHESVRSLNWKDMLGWQSRGGSEI 461 (766)
T ss_dssp STTCSSSSCCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHHHCCEEECCGGGGTTGGGCCSCTT
T ss_pred ccccCCcccCcEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecChHhhCCCCceEECCHHHHhhHhhCCCceE
Confidence 121122 2357999999999999999999999998863 34799999999999997 7899999999999999999999
Q ss_pred eecCCC---CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcC-CCceeeeeeccccCCCcccccccCchhHH
Q 015095 214 RTSRGG---HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG-LQVAVAGIPKTIDNDIAVIDKSFGFDTAV 289 (413)
Q Consensus 214 GTsR~~---~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~-~~i~vvgIPkTIDNDI~gtD~S~GFdTAv 289 (413)
||+|+. .++++++++|++++||+||+||||||+++|++|++++++++ +.|+|||||||||||+++||+|||||||+
T Consensus 462 GTsR~~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~T~GfdTA~ 541 (766)
T 3o8o_B 462 GTNRVTPEEADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTEYSLGSDTAL 541 (766)
T ss_dssp CCCCCCGGGGCHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHTTTTTCGGGCSCCCEEEBCTTCCCSSCSCCBTHHHHH
T ss_pred ccCCCCCccchHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeccccccCCCCCCCCCChhHHH
Confidence 999984 36899999999999999999999999999999998765443 57899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHH--h---CC
Q 015095 290 EEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLK--E---NG 364 (413)
Q Consensus 290 ~~~~~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~--~---~~ 364 (413)
|+++++||+++++|.|+++||||||+|||+|||||++++||+ +||+|||||+||+++++.+.+++++++++ + +.
T Consensus 542 ~~~~~aid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~-ga~~ilIPE~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 620 (766)
T 3o8o_B 542 NALMEYCDVVKQSASSTRGRAFVVDCQGGNSGYLATYASLAV-GAQVSYVPEEGISLEQLSEDIEYLAQSFEKAEGRGRF 620 (766)
T ss_dssp HHHHHHHHHHHHHHHHHSSEEEEEEECCTTCCHHHHHHHHHH-TCSEEECTTTCCCHHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCchhHHHHHHHHhh-CCCEEEeCCCCCCHHHHHHHHHHHHHHHhhhhccCCC
Confidence 999999999999999877899999999999999999999999 79999999999999854444444455554 1 34
Q ss_pred cEEEEEeCCCCccccc----ccCCcc------cccCCCCCccccc
Q 015095 365 HMVIVVAEGAGQEFVA----QSMPAV------DEKDASGNRLLLD 399 (413)
Q Consensus 365 ~~vIvvaEGa~~~~~~----~~~~~~------~~~Da~Gn~~l~~ 399 (413)
+.+|+++||+...+.. +.+.+. .+...-||.|.||
T Consensus 621 ~~iivvaEg~~~~~~~~~la~~i~~~~~~~~e~R~tvLGhiQRGG 665 (766)
T 3o8o_B 621 GKLILKSTNASKALSATKLAEVITAEADGRFDAKPAYPGHVQQGG 665 (766)
T ss_dssp CEEEEEEGGGCSSCCHHHHHHHHHHHHTTSCEEEEEBCGGGGGCS
T ss_pred ceEEEEeCCcCCCCcHHHHHHHHHHHhCCCceEEEecccccccCC
Confidence 6899999998543332 222111 1224449999988
No 8
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=4.8e-72 Score=614.03 Aligned_cols=326 Identities=18% Similarity=0.190 Sum_probs=280.1
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhccCC-----CCcccccccC--------Cc-
Q 015095 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG--------PR- 135 (413)
Q Consensus 70 ~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag--------pr- 135 (413)
++.++||.+|++..+++|.+++.+++|+.+++|++++|..++.|.++| .+|+| +|+++|.+++ ++
T Consensus 483 rlG~~AV~~l~~g~~~~~g~mVg~~~~~iv~~Pl~e~v~~~k~v~~a~-~~~~f~~a~~lr~~~f~~~~~~~~~~~~~~~ 561 (941)
T 3opy_B 483 LQGVEAVNAVLECDADTPSPMIAIKEDQITRVPLVDAVELTQQVAKSI-ESRNFKKAISLRDSEFVEHMKNFISTNSADH 561 (941)
T ss_dssp HHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHH-HTTCHHHHHHHSCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCCcHHHH-hcCCHHHHHHccCHHHHHHHHHHHHhccCCC
Confidence 578999999999999999999999999999999999999999999999 67887 6999999977 11
Q ss_pred ccccc-CCCCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhcc-CCCeeeCChhhHhhhhhcCCcee
Q 015095 136 EKVYF-KSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFY-SKNTLTLSPKVVNDIHKRGGTIL 213 (413)
Q Consensus 136 ~~~~~-~~~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~-~~~~~~Lt~~~V~~i~~~GGs~L 213 (413)
.+... +.++.||||+||||||||||++||++|+++.. .+++||||++||+||+ ++++++|+|..|++|+++|||+|
T Consensus 562 ~~~~~~~~~~~rIgIltsGGdapGmNaaIravv~~a~~--~g~~V~Gi~~G~~GL~~~~~~~~L~~~~V~~i~~~GGTiL 639 (941)
T 3opy_B 562 VPPSLPLEKRKKIAIINVGAPAGGMNSAVYSMATYCMS--RGHVPYAIHNGFSGLARHESVRSINWLDIEGWGSLGGSEI 639 (941)
T ss_dssp SCCSSCGGGCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSCSS
T ss_pred ccccCCcccCcEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEccchHhhCcCCcEEECCHHHHhChhhCCCcEe
Confidence 11112 23468999999999999999999999998763 3579999999999999 79999999999999999999999
Q ss_pred eecCCC---CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc-CCCceeeeeeccccCCCcccccccCchhHH
Q 015095 214 RTSRGG---HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 289 (413)
Q Consensus 214 GTsR~~---~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~-~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv 289 (413)
||+|+. .++++++++|++++||+||+||||||+++|++|+++++++ ++.|+|||||||||||+++||+|||||||+
T Consensus 640 GTsR~~~~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gTD~TiGfdTA~ 719 (941)
T 3opy_B 640 GTNRTLPNDADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTEYSLGSDTCL 719 (941)
T ss_dssp CEECCCTTTSCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHH
T ss_pred ccCCCCcccchHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeeccccCCCCCCCCCCChHHHH
Confidence 999974 3689999999999999999999999999999999876555 357999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-----CC
Q 015095 290 EEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-----NG 364 (413)
Q Consensus 290 ~~~~~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~-----~~ 364 (413)
++++++||+++++|.|+++||||||+|||+|||||+++|||+ +||+|||||+||+++++.+.+++++++++. +.
T Consensus 720 ~~i~eaid~i~~tA~ssh~RvfiVEvMGR~aG~LAl~agLA~-GAd~ilIPE~~~~l~~l~~~i~~l~~~~~~~~g~~~~ 798 (941)
T 3opy_B 720 NSFMEYCDVIKQSAAATRNRVFVVEVQGGNSGYIATHAQLAC-GAQISYVPEEGISLAQLEMDINSLKESFANDQGKTKS 798 (941)
T ss_dssp HHHHHHHHHHHHHHHHC-CEEEEEEECSTTCCHHHHHHHHHH-TCSEEECTTTCCCHHHHHHHHHHHHHHHHTCTTSCCC
T ss_pred HHHHHHHHHHHHHhhhcCCcEEEEEeCCcchhHHHHHHHHhh-CCCEEEeCCCCCCHHHHHHHHHHHHHHHhhhhcCCCC
Confidence 999999999999999877899999999999999999999999 799999999999998544455555566642 23
Q ss_pred cEEEEEeCCCCcccc----cccCCcc------cccCCCCCccccc
Q 015095 365 HMVIVVAEGAGQEFV----AQSMPAV------DEKDASGNRLLLD 399 (413)
Q Consensus 365 ~~vIvvaEGa~~~~~----~~~~~~~------~~~Da~Gn~~l~~ 399 (413)
+.+|++|||+...+. ++.+++. .+...-||+|.||
T Consensus 799 ~~iIvvaEga~~~~~~~~la~~i~~~~~~g~e~R~tvLGHiQRGG 843 (941)
T 3opy_B 799 GRLILKSENASKVLTTEVISTIIDDEASGRFDSKTAIPGHVQQGG 843 (941)
T ss_dssp CEEEEEEGGGCSSSCHHHHHHHHHHHHTTSSEEEEECCCTTTTCS
T ss_pred ceEEEEeCCccCCCCHHHHHHHHHHHhCCCceeEEccccccccCC
Confidence 589999999864332 2222211 1234459999998
No 9
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=100.00 E-value=2.8e-70 Score=543.84 Aligned_cols=242 Identities=29% Similarity=0.432 Sum_probs=216.0
Q ss_pred eeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCC----
Q 015095 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH---- 220 (413)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~---- 220 (413)
.||||+||||||||||++||++|+++.. + +.+||||++||+||+++++++|+|+.|++|+++|||+|||+|+++
T Consensus 2 k~i~IltsGGdapGmNaair~vv~~a~~-~-g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~ 79 (319)
T 1zxx_A 2 KRIGILTSGGDAPGMNAAVRAVTRVAIA-N-GLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGTFLYSARYPEFAEE 79 (319)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHHT-T-TCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCSCTTCCCCCGGGTSH
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHHH-C-CCEEEEEccChHHHcCCCEEECCHHHHHhHHhCCCcccccCCCCccCCH
Confidence 4899999999999999999999998863 4 579999999999999999999999999999999999999999863
Q ss_pred -cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHH
Q 015095 221 -DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (413)
Q Consensus 221 -d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i 299 (413)
++++++++|++++||+||+||||||+++|++|+++ .++|||||||||||+++||+|||||||+++++++|+++
T Consensus 80 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td~t~GfdTA~~~~~~aid~i 153 (319)
T 1zxx_A 80 EGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH------GFNSIGLPGTIDNDIPYTDATIGYDTACMTAMDAIDKI 153 (319)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEEETTCCCTTCSCCEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHh------CCCEEEEeecccCCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999874 58899999999999999999999999999999999999
Q ss_pred HHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-CCcEEEEEeCCCCc-c
Q 015095 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQ-E 377 (413)
Q Consensus 300 ~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~-~~~~vIvvaEGa~~-~ 377 (413)
+++|.|+ +||||||+|||+|||||++++||+ +||+|||||.||+++ ++++.|++++++ ++|++||||||+.+ .
T Consensus 154 ~~ta~s~-~rv~iVEvMGR~aG~lAl~a~lA~-ga~~iliPE~~~~~~---~i~~~i~~~~~~gk~~~iIvvaEG~~~~~ 228 (319)
T 1zxx_A 154 RDTASSH-HRVFIVNVMGRNCGDIAMRVGVAC-GADAIVIPERPYDVE---EIANRLKQAQESGKDHGLVVVAEGVMTAD 228 (319)
T ss_dssp HHHHHHT-TCEEEEEECCTTCCHHHHHHHHHT-TCSEEECTTSCCCHH---HHHHHHHHHHHTTCCCEEEEEETTTCCHH
T ss_pred HHHHhcC-CCEEEEEeCCCCHHHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCcChHH
Confidence 9999997 589999999999999999999999 799999999999987 899999999965 78999999999953 2
Q ss_pred cccccCCcc----cccCCCCCccccc
Q 015095 378 FVAQSMPAV----DEKDASGNRLLLD 399 (413)
Q Consensus 378 ~~~~~~~~~----~~~Da~Gn~~l~~ 399 (413)
++.+.+++. .+....||.|-|+
T Consensus 229 ~l~~~i~~~~~~~~r~~~lGh~qRgg 254 (319)
T 1zxx_A 229 QFMAELKKYGDFDVRANVLGHMQRGG 254 (319)
T ss_dssp HHHHHHHHSSCCCEEEEECGGGGGCS
T ss_pred HHHHHHHHhhCceEEEecCCccccCC
Confidence 222222111 1223457877765
No 10
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=100.00 E-value=3.8e-70 Score=543.11 Aligned_cols=218 Identities=31% Similarity=0.515 Sum_probs=206.0
Q ss_pred eeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCC----
Q 015095 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH---- 220 (413)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~---- 220 (413)
.||||+||||||||||++||++|+++.+ + +.+||||++||+||+++++++|+|..|++|+++|||+|||+|+++
T Consensus 3 k~i~IltsGGdapGmNaair~vv~~a~~-~-g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~ 80 (320)
T 1pfk_A 3 KKIGVLTSGGDAPGMNAAIRGVVRSALT-E-GLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDE 80 (320)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHHH-T-TCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSCTTCCCCCGGGGSH
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHHH-C-CCEEEEEecChHHhcCCCEEECCHHHHhhHHhCCCCeeccCCCCCCCCH
Confidence 4899999999999999999999998863 4 479999999999999999999999999999999999999999863
Q ss_pred -cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHH
Q 015095 221 -DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (413)
Q Consensus 221 -d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i 299 (413)
++++++++|++++||+||+||||||+++|++|+++ .++|||||||||||+++||+|||||||+++++++|+++
T Consensus 81 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td~t~GfdTA~~~~~~aid~i 154 (320)
T 1pfk_A 81 NIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM------GFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRL 154 (320)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEBCTTCCCTTCSCCBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHhh------CCCEEEEeccccCCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999873 58899999999999999999999999999999999999
Q ss_pred HHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-CCcEEEEEeCCCC
Q 015095 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAG 375 (413)
Q Consensus 300 ~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~-~~~~vIvvaEGa~ 375 (413)
+++|.|++ ||||||+|||+|||||++++||+ +||+|||||.||+++ +++++|++|+++ ++|++||||||+.
T Consensus 155 ~~ta~s~~-rv~iVEvMGR~aG~lAl~a~lA~-ga~~iliPE~~~~~~---~i~~~i~~~~~~gk~~~iIvvaEG~~ 226 (320)
T 1pfk_A 155 RDTSSSHQ-RISVVEVMGRYCGDLTLAAAIAG-GCEFVVVPEVEFSRE---DLVNEIKAGIAKGKKHAIVAITEHMC 226 (320)
T ss_dssp HHHHHHHT-CEEEEEECCTTCCHHHHHHHHHT-TCSEEECTTSCCCHH---HHHHHHHHHHHTTCSCEEEEEESSSS
T ss_pred HHHHhcCC-CEEEEEeCCcCHHHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 99999985 89999999999999999999999 799999999999987 899999999965 6899999999985
No 11
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=100.00 E-value=9.2e-69 Score=533.29 Aligned_cols=242 Identities=32% Similarity=0.490 Sum_probs=216.2
Q ss_pred eeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC-----
Q 015095 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG----- 219 (413)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~----- 219 (413)
.|||||||||||||||++||++|+++.+ .+.+|||+++||+||+++++++|+|+.|++|+++|||+|||+|++
T Consensus 2 krIgIltsGG~~pG~Na~ir~vv~~a~~--~g~~v~Gi~~G~~Gl~~~~~~~l~~~~v~~i~~~GGt~lgtsR~~~~~~~ 79 (319)
T 4a3s_A 2 KRIGVLTSGGDSPGMNAAVRAVVRKAIY--HDVEVYGIYNGYAGLISGKIEKLELGSVGDIIHRGGTKLYTARCPEFKTV 79 (319)
T ss_dssp CEEEEEEESSCCTTHHHHHHHHHHHHHH--TTCEEEEECSTTHHHHHCCEEEECGGGGTTCTTCCSCTTCCCCCHHHHSH
T ss_pred CEEEEECcCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecchHHHcCCCeecCCHHHHHhHHhcCCCccccCCCCccccH
Confidence 3899999999999999999999998763 457999999999999999999999999999999999999999984
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHH
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i 299 (413)
+++++++++|++++||+||+||||||+++|++|+++ .++|||||||||||+++||+|||||||+++++++|+++
T Consensus 80 e~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l~~~------~i~vigiPkTIDNDl~~td~t~GfdTA~~~~~~ai~~i 153 (319)
T 4a3s_A 80 EGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH------GFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKI 153 (319)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHHHHT------TCCEEEEEEETTCCCTTCSCCEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhcc------CCcEEEeeccccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999863 47799999999999999999999999999999999999
Q ss_pred HHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHh-CCcEEEEEeCCCCccc
Q 015095 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKE-NGHMVIVVAEGAGQEF 378 (413)
Q Consensus 300 ~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~-~~~~vIvvaEGa~~~~ 378 (413)
+++|.|+ +||||||+|||+|||||++++||+ +||+|||||.||+++ ++++.|++++++ ++|++||||||+.+..
T Consensus 154 ~~~a~s~-~rv~ivEvMGR~aG~lA~~a~la~-ga~~iliPE~~~~~~---~~~~~i~~~~~~g~~~~iivvaEG~~~~~ 228 (319)
T 4a3s_A 154 RDTATSH-ERTYVIEVMGRHAGDIALWAGLAG-GAESILIPEADYDMH---EIIARLKRGHERGKKHSIIIVAEGVGSGV 228 (319)
T ss_dssp HHHHHHH-TCEEEEEECCTTCCHHHHHHHHHH-TCSEEEBTTBCCCHH---HHHHHHHHHHTTTCCCEEEEEETTTCCHH
T ss_pred Hhhhhcc-CCeEEEEeCCcchhHHHHHHHhcc-CCCEEEecCCCCCHH---HHHHHHHHHHHcCCCceEEEEECCCCcch
Confidence 9999987 579999999999999999999999 899999999999887 799999988877 6899999999997532
Q ss_pred -ccccCCc----ccccCCCCCccccc
Q 015095 379 -VAQSMPA----VDEKDASGNRLLLD 399 (413)
Q Consensus 379 -~~~~~~~----~~~~Da~Gn~~l~~ 399 (413)
..+.+.+ +.+....||.|-++
T Consensus 229 ~~~~~~~~~~g~~~r~~~lGh~qRgg 254 (319)
T 4a3s_A 229 EFGKRIEEETNLETRVSVLGHIQRGG 254 (319)
T ss_dssp HHHHHHHHHHCCCEEEEECGGGGGCS
T ss_pred HHHHHHHHhCCceEEEcchhHHHhCC
Confidence 1111111 12335578998876
No 12
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=5.4e-65 Score=551.66 Aligned_cols=229 Identities=24% Similarity=0.393 Sum_probs=210.8
Q ss_pred CCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCC--CeeeCChhhHhhhhhcCCceeeecCCCC
Q 015095 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGGH 220 (413)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~--~~~~Lt~~~V~~i~~~GGs~LGTsR~~~ 220 (413)
+..||||+||||||||||++||++|+.+. +.+.+||||++||+||+++ ++++|+|+.|++|+++|||+|||+|+++
T Consensus 14 ~~krIaIltsGGdaPGmNaaIravvr~a~--~~g~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGTiLGSsR~~~ 91 (762)
T 3o8l_A 14 VGKAIAVLTSGGDAQGMNAAVRAVVRVGI--FTGARVFFVHEGYQGLVDGGDHIREATWESVSMMLQLGGTVIGSARCKD 91 (762)
T ss_dssp SSCEEEEECCSSCCTTHHHHHHHHHHHHH--HTTCEEECCSTHHHHHHSCGGGCCBCCSGGGTTCTTCCSCSSCCCCCCG
T ss_pred cCcEEEEEccCCCchhHhHHHHHHHHHHH--HCCCEEEEEecChhhhhcCCCcEEECCHHHHHhHHhCCCccccCCCCCc
Confidence 45699999999999999999999999775 4568999999999999999 8999999999999999999999999863
Q ss_pred -----cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHH-----------------HHHcCCCceeeeeeccccCCCcc
Q 015095 221 -----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKE-----------------VEKRGLQVAVAGIPKTIDNDIAV 278 (413)
Q Consensus 221 -----d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~-----------------~~~~~~~i~vvgIPkTIDNDI~g 278 (413)
++++++++|++++||+||+||||||+++|+.|+++ ++++++.++|||||||||||+++
T Consensus 92 f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl~g 171 (762)
T 3o8l_A 92 FREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCG 171 (762)
T ss_dssp GGSHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCCSS
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCCCC
Confidence 46899999999999999999999999999988653 33456789999999999999999
Q ss_pred cccccCchhHHHHHHHHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHH
Q 015095 279 IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIER 358 (413)
Q Consensus 279 tD~S~GFdTAv~~~~~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~ 358 (413)
||+|||||||+++++++|++++++|.|+ +|+||||+|||+|||||+++|||+ +||+|||||.||+++++..+++.|++
T Consensus 172 TD~TiGfdTA~~~i~eaid~i~~tA~Sh-~Rv~iVEvMGR~aG~LAl~aglA~-gad~ilIPE~p~~~~~~~~~~~~i~~ 249 (762)
T 3o8l_A 172 TDMTIGTDSALHRITEIVDAITTTAQSH-QRTFVLEVMGRHCGYLALVTSLSC-GADWVFIPECPPDDNWEDHLCRRLSE 249 (762)
T ss_dssp CSCCBTHHHHHHHHHHHHHHHHTTCCSS-CCEEEEEECCSSCCHHHHHHHHHH-TCSBCCCTTSCCCSSCHHHHHHHHHH
T ss_pred CcCCcCchhHHHHHHHHHHHHHHhhhcC-ccEEEEEeCCcchhHHHHHHHHhc-CCCEEEecCCCCCcchHHHHHHHHHH
Confidence 9999999999999999999999999997 579999999999999999999999 79999999999999877789999988
Q ss_pred HHHh-CCcEEEEEeCCCC
Q 015095 359 QLKE-NGHMVIVVAEGAG 375 (413)
Q Consensus 359 r~~~-~~~~vIvvaEGa~ 375 (413)
+.++ ++|++||||||+.
T Consensus 250 ~~~~gk~~~iVvVaEGa~ 267 (762)
T 3o8l_A 250 TRTRGSRLNIIIVAEGAI 267 (762)
T ss_dssp HHHTTCSCCBBCEETTCC
T ss_pred HHHcCCCceEEEEeCCcc
Confidence 7765 4689999999984
No 13
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-63 Score=536.31 Aligned_cols=229 Identities=25% Similarity=0.393 Sum_probs=202.3
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCC---eeeCChhhHhhhhhcCCceeeecCCCC
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKN---TLTLSPKVVNDIHKRGGTILRTSRGGH 220 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~---~~~Lt~~~V~~i~~~GGs~LGTsR~~~ 220 (413)
..||||+||||||||||++||++|+++.. + +.+||||++||+||++++ +.+|+|+.|++|+++|||+|||+|+++
T Consensus 3 ~krIgIltsGGdapGmNaaIravvr~a~~-~-g~~V~Gi~~G~~GL~~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~ 80 (766)
T 3o8o_B 3 QKAIAVMTSGGDAPGMNSNVRAIVRSAIF-K-GCRAFVVMEGYEGLVRGGPEYIKEFHWEDVRGWSAEGGTNIGTARCME 80 (766)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHHH-H-TCEEEEETTHHHHHHSCSTTTEEEECGGGGTTGGGCCSCTTCCCCCSG
T ss_pred CcEEEEEeeCCCchhHHHHHHHHHHHHHH-C-CCEEEEEeCChHHHhcCCcccEEECCHHHHhhHHhCCCceeccCCCCc
Confidence 46999999999999999999999998864 3 479999999999999986 789999999999999999999999863
Q ss_pred -----cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHH-----------------HHHcCCCceeeeeeccccCCCcc
Q 015095 221 -----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKE-----------------VEKRGLQVAVAGIPKTIDNDIAV 278 (413)
Q Consensus 221 -----d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~-----------------~~~~~~~i~vvgIPkTIDNDI~g 278 (413)
+..+++++|++++||+||+||||||+++|.+|+++ ..+++..++|||||||||||+++
T Consensus 81 ~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~g 160 (766)
T 3o8o_B 81 FKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMST 160 (766)
T ss_dssp GGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCTT
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCCC
Confidence 35789999999999999999999999999988653 33446679999999999999999
Q ss_pred cccccCchhHHHHHHHHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCCh-hhHHHHHH
Q 015095 279 IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGP-GGLFEFIE 357 (413)
Q Consensus 279 tD~S~GFdTAv~~~~~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~-~~~~e~i~ 357 (413)
||+|||||||+++++++|++++++|.|+ +||||||+|||+|||||+++|||+ +||+|||||.||++++. ..+++.++
T Consensus 161 TD~TiGfdTA~~~i~eaid~i~~tA~Sh-~RvfvVEvMGR~aG~LAl~aglA~-gAd~ilIPE~p~~~~~~~~~v~~~i~ 238 (766)
T 3o8o_B 161 TDATIGAYSALDRICKAIDYVEATANSH-SRAFVVEVMGRNCGWLALLAGIAT-SADYIFIPEKPATSSEWQDQMCDIVS 238 (766)
T ss_dssp CSCCBTHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCTTCCHHHHHHHHHH-TCSEEECTTCCCCTTHHHHHHHHHHH
T ss_pred CCCCCChhHHHHHHHHHHHHHHhhhhcc-CceEEEEcCCcchhHHHHHHHHhc-CCCEEEccCCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999987 579999999999999999999999 79999999999999832 23334444
Q ss_pred HHHHh-CCcEEEEEeCCCCc
Q 015095 358 RQLKE-NGHMVIVVAEGAGQ 376 (413)
Q Consensus 358 ~r~~~-~~~~vIvvaEGa~~ 376 (413)
++.++ ++|+|||||||+.+
T Consensus 239 ~~~~~gk~~~IVvVaEGa~~ 258 (766)
T 3o8o_B 239 KHRSRGKRTTIVVVAEGAIA 258 (766)
T ss_dssp HHHHTTCCCEEEEEETTCBC
T ss_pred HHHhcCCCceEEEEeCCccc
Confidence 43333 46899999999964
No 14
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-63 Score=539.62 Aligned_cols=230 Identities=25% Similarity=0.404 Sum_probs=202.5
Q ss_pred CCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCC--CeeeCChhhHhhhhhcCCceeeecCCCC
Q 015095 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGGH 220 (413)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~--~~~~Lt~~~V~~i~~~GGs~LGTsR~~~ 220 (413)
++.||||+||||||||||++||++|+++.. + +.+||||++||+||+++ ++.+|+|++|++|+++|||+|||+|+++
T Consensus 4 ~~krIgIltsGGdaPGmNaaIravvr~a~~-~-g~~V~Gi~~G~~GL~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~ 81 (787)
T 3o8o_A 4 KKKKIAVMTSGGDSPGMNAAVRAVVRTGIH-F-GCDVFAVYEGYEGLLRGGKYLKKMAWEDVRGWLSEGGTLIGTARSME 81 (787)
T ss_dssp -CCEEEEEEESSCCTTHHHHHHHHHHHHHH-T-TCEEEEETTHHHHHHHCTTSEEECCGGGGTTGGGCCSCTTCCCCCSG
T ss_pred CCcEEEEEeeCCCchhHHHHHHHHHHHHHH-C-CCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCceeccCCCCc
Confidence 457999999999999999999999998863 4 57999999999999988 6999999999999999999999999863
Q ss_pred -----cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHH-------H----------HHcCCCceeeeeeccccCCCcc
Q 015095 221 -----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKE-------V----------EKRGLQVAVAGIPKTIDNDIAV 278 (413)
Q Consensus 221 -----d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~-------~----------~~~~~~i~vvgIPkTIDNDI~g 278 (413)
+..+++++|++++||+||+||||||+++|.+|+++ + .+++..++|||||||||||+++
T Consensus 82 f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~g 161 (787)
T 3o8o_A 82 FRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSG 161 (787)
T ss_dssp GGSHHHHHHHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCTT
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCCC
Confidence 35789999999999999999999999999987642 2 2335679999999999999999
Q ss_pred cccccCchhHHHHHHHHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCCh-hhHHHHHH
Q 015095 279 IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGP-GGLFEFIE 357 (413)
Q Consensus 279 tD~S~GFdTAv~~~~~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~-~~~~e~i~ 357 (413)
||+|||||||+++++++|++++++|.|+ +||||||+|||+|||||+++|||+ +||+|||||.||++++. ..+.+.++
T Consensus 162 TD~TiGfdTAl~~i~eaid~i~~tA~Sh-~RvfvVEVMGR~aG~LAl~agLA~-gAd~ilIPE~p~~~~~~~~~v~~~i~ 239 (787)
T 3o8o_A 162 TDSTIGAYSALERICEMVDYIDATAKSH-SRAFVVEVMGRHCGWLALMAGIAT-GADYIFIPERAVPHGKWQDELKEVCQ 239 (787)
T ss_dssp SSCCEEHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCTTCCHHHHHHHHHT-TCSEEECGGGCBCTTTHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhhhhcc-CceEEEEcCCcchhHHHHHHHHhh-CCCEEEeCCCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999996 579999999999999999999999 79999999999999843 23344444
Q ss_pred HHHHh-CCcEEEEEeCCCCc
Q 015095 358 RQLKE-NGHMVIVVAEGAGQ 376 (413)
Q Consensus 358 ~r~~~-~~~~vIvvaEGa~~ 376 (413)
++.++ ++|++||||||+.+
T Consensus 240 ~~~~~gk~~~IVvVaEGa~~ 259 (787)
T 3o8o_A 240 RHRSKGRRNNTIIVAEGALD 259 (787)
T ss_dssp HHHHTTCCCEEEEEETTCBB
T ss_pred HHHhcCCCceEEEEeCCCcc
Confidence 43333 46899999999964
No 15
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=1.9e-62 Score=538.30 Aligned_cols=229 Identities=27% Similarity=0.393 Sum_probs=203.1
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCC---eeeCChhhHhhhhhcCCceeeecCCCC
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKN---TLTLSPKVVNDIHKRGGTILRTSRGGH 220 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~---~~~Lt~~~V~~i~~~GGs~LGTsR~~~ 220 (413)
..||||+||||||||||++||++|+.+.. + +.+||||++||+||++++ +.+|+|+.|++|+++|||+|||+|+++
T Consensus 181 ~krIgIlTsGGdaPGmNAaIRaVVr~a~~-~-g~~V~Gi~~Gy~GLl~g~~~~i~~l~~~~V~~i~~~GGTiLGSsR~~~ 258 (941)
T 3opy_B 181 RKTIGVMTSGGDSPGMNPFVRAVVRAGIY-K-GCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGTARCKE 258 (941)
T ss_dssp CCCEEEEECSSCCTTHHHHHHHHHHHHHH-T-TCCEEEETTHHHHHHHCSTTTEEEECGGGGTTTTTCCSCSSCCCCCSG
T ss_pred CCEEEEEeeCcCchhHHHHHHHHHHHHHH-C-CCEEEEEeCChHHhccCCcceEEECCHHHHHhHHhCCCceeccCCCCc
Confidence 57999999999999999999999998863 4 479999999999999986 789999999999999999999999863
Q ss_pred -----cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHH-----------------HHHHcCCCceeeeeeccccCCCcc
Q 015095 221 -----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK-----------------EVEKRGLQVAVAGIPKTIDNDIAV 278 (413)
Q Consensus 221 -----d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e-----------------~~~~~~~~i~vvgIPkTIDNDI~g 278 (413)
+..+++++|++++||+||+||||||+++|.+|++ +..+++..++|||||||||||+++
T Consensus 259 f~~~~~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDNDl~g 338 (941)
T 3opy_B 259 FRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSS 338 (941)
T ss_dssp GGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCSS
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCCCCC
Confidence 3568999999999999999999999999998764 344556779999999999999999
Q ss_pred cccccCchhHHHHHHHHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCCh-hhHHHHHH
Q 015095 279 IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGP-GGLFEFIE 357 (413)
Q Consensus 279 tD~S~GFdTAv~~~~~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~-~~~~e~i~ 357 (413)
||+|||||||+++++++|++++++|.|+ +||||||+|||+|||||+++|||+ +||+|||||.||++++. ..+++.++
T Consensus 339 TD~TiGfdTAv~~i~eaId~I~~tA~Sh-~RvfvVEVMGR~aG~LAl~agLA~-GAd~IlIPE~p~~~~~~~~~v~~~i~ 416 (941)
T 3opy_B 339 TDATIGAFSSLDRICRAIDYIDATANSH-SRAFIVEVMGRHCGWLGLLAGLAT-SADYILIPEKPASSREWQDQMCDIVG 416 (941)
T ss_dssp CSSCEEHHHHHHHHHHHHHHHHSCC-CC-SEEEEEECCCSSCCHHHHHHHHHT-TCSEEECTTSCCCSSCHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHhhhhcc-CceEEEEcCCCcccHHHHHHHHhc-CCCEEEECCCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999986 579999999999999999999999 79999999999999843 34445555
Q ss_pred HHHHh-CCcEEEEEeCCCCc
Q 015095 358 RQLKE-NGHMVIVVAEGAGQ 376 (413)
Q Consensus 358 ~r~~~-~~~~vIvvaEGa~~ 376 (413)
++.++ ++|+|||||||+.+
T Consensus 417 ~~~~~gk~~~IVVVAEGa~~ 436 (941)
T 3opy_B 417 KHRARGKRKTIVIVAEGAIS 436 (941)
T ss_dssp HHHHHTCCCEEEEECTTCBC
T ss_pred HHHhcCCCcEEEEEeCCccc
Confidence 44433 57899999999964
No 16
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=3.7e-62 Score=535.18 Aligned_cols=230 Identities=25% Similarity=0.388 Sum_probs=203.2
Q ss_pred CCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCC--CeeeCChhhHhhhhhcCCceeeecCCCC
Q 015095 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGGH 220 (413)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~--~~~~Lt~~~V~~i~~~GGs~LGTsR~~~ 220 (413)
...||||+||||||||||++||++|+++.. + +.+||||++||+||+++ ++.+|+|+.|++|+++|||+|||+|+++
T Consensus 209 ~~krIaIlTSGGdaPGmNAaIRaVVr~a~~-~-G~~V~Gi~~Gy~GLl~g~~~i~~L~~~~V~~i~~~GGTiLGTsR~~~ 286 (989)
T 3opy_A 209 GKKKIAIITSGGDAPGMNAAVRAVTRAGIF-Y-GCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGTIIGTARCKE 286 (989)
T ss_dssp CSEEEEEEECSSCCTTHHHHHHHHHHHHHH-T-TEEEEEECTHHHHHHSCSTTEEEECTTTTTTGGGCCSCSSCCCCSSS
T ss_pred cCCEEEEEeeCCCchhHHHHHHHHHHHHHH-C-CCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCccccCCCCCc
Confidence 357999999999999999999999998863 4 57999999999999998 5899999999999999999999999853
Q ss_pred -----cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHH-----------------HHcCCCceeeeeeccccCCCcc
Q 015095 221 -----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEV-----------------EKRGLQVAVAGIPKTIDNDIAV 278 (413)
Q Consensus 221 -----d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~-----------------~~~~~~i~vvgIPkTIDNDI~g 278 (413)
++++++++|++++||+||+||||||+++|++|+++. .+.+..++|||||||||||+++
T Consensus 287 f~~~e~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl~g 366 (989)
T 3opy_A 287 FRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCG 366 (989)
T ss_dssp TTSHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCTT
T ss_pred ccchhHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCCCC
Confidence 367999999999999999999999999999987531 2235679999999999999999
Q ss_pred cccccCchhHHHHHHHHHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHH
Q 015095 279 IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIER 358 (413)
Q Consensus 279 tD~S~GFdTAv~~~~~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~ 358 (413)
||+|||||||+++++++|++++++|.|+ +||||||+|||+|||||+++|||+ +||+|||||.||++++..+.+.++.+
T Consensus 367 TD~TiGFdTAl~~i~eaId~I~~TA~Sh-~RvfVVEVMGR~aG~LAl~agLA~-GAd~IlIPE~pf~l~~~~~~l~~~i~ 444 (989)
T 3opy_A 367 TDSTIGAYSSLERIIELVDYIDATAASH-SRAFVVEVMGRHCGWLGLMSGIAT-GADYIFIPERPPSESNWKDDLKKVCL 444 (989)
T ss_dssp CSCCEEHHHHHHHHHHHHHHHHSSCCCT-TEEEEEECCCSSCTHHHHHHHHHH-TCSEEECTTSCCCTTTHHHHHHHHHH
T ss_pred CCCCCChhhHHHHHHHHHHHHHhhhhcc-CceEEEEcCCCchhHHHHHHHHhc-CCCEEEeCCCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999986 689999999999999999999999 79999999999999854433333333
Q ss_pred HHHh--CCcEEEEEeCCCCc
Q 015095 359 QLKE--NGHMVIVVAEGAGQ 376 (413)
Q Consensus 359 r~~~--~~~~vIvvaEGa~~ 376 (413)
+.++ ++|++||||||+.+
T Consensus 445 k~~~~Gk~~~IVVVAEGa~~ 464 (989)
T 3opy_A 445 RHREKGRRKTTVIVAEGAID 464 (989)
T ss_dssp HHHHTTCCEEEEEECTTCBC
T ss_pred HHHhcCCCceEEEEeCCccc
Confidence 3322 46899999999964
No 17
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=94.36 E-value=0.049 Score=52.14 Aligned_cols=89 Identities=18% Similarity=0.096 Sum_probs=50.3
Q ss_pred eeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcHHH
Q 015095 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (413)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~~ 224 (413)
.|++|+.-.+ .+..+..++.+++.+.. . +.+++......+++-. .|. . ....+.
T Consensus 6 kki~ii~np~-~~~~~~~~~~i~~~l~~-~-g~~v~~~~~~~~~~~~-----------------~~~----~--~~~~~~ 59 (292)
T 2an1_A 6 KCIGIVGHPR-HPTALTTHEMLYRWLCD-Q-GYEVIVEQQIAHELQL-----------------KNV----P--TGTLAE 59 (292)
T ss_dssp CEEEEECC--------CHHHHHHHHHHH-T-TCEEEEEHHHHHHTTC-----------------SSC----C--EECHHH
T ss_pred cEEEEEEcCC-CHHHHHHHHHHHHHHHH-C-CCEEEEecchhhhccc-----------------ccc----c--ccchhh
Confidence 3788888654 36677788888887764 3 3467665544333210 010 0 011111
Q ss_pred HHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeee
Q 015095 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (413)
Q Consensus 225 iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIP 269 (413)
...+.|.++++|||||+..+..... +..++++|||
T Consensus 60 -----~~~~~D~vi~~GGDGT~l~a~~~~~-----~~~~P~lGI~ 94 (292)
T 2an1_A 60 -----IGQQADLAVVVGGDGNMLGAARTLA-----RYDINVIGIN 94 (292)
T ss_dssp -----HHHHCSEEEECSCHHHHHHHHHHHT-----TSSCEEEEBC
T ss_pred -----cccCCCEEEEEcCcHHHHHHHHHhh-----cCCCCEEEEE
Confidence 2346899999999999887664432 2357899998
No 18
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=92.50 E-value=0.058 Score=51.55 Aligned_cols=45 Identities=29% Similarity=0.347 Sum_probs=29.9
Q ss_pred HHHHHHHHHh-------CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeec
Q 015095 223 NKIVDNIEDR-------GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (413)
Q Consensus 223 ~~iv~~l~~~-------~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPk 270 (413)
+++.+.|+++ +.|.++++|||||+..|..... ....+++++|||.
T Consensus 18 ~~l~~~l~~~g~~v~~~~~D~vv~lGGDGT~l~aa~~~~---~~~~~~PilGIn~ 69 (272)
T 2i2c_A 18 LNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYE---ERLDEIAFIGIHT 69 (272)
T ss_dssp HHHHHHHTTSSCEECSSSCSEEEEEESHHHHHHHHHHTG---GGTTTCEEEEEES
T ss_pred HHHHHHHHHCCCEeCCCCCCEEEEEcCcHHHHHHHHHHh---hcCCCCCEEEEeC
Confidence 3444445554 4599999999999887654432 1112588999984
No 19
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=91.31 E-value=0.071 Score=51.78 Aligned_cols=64 Identities=20% Similarity=0.255 Sum_probs=44.1
Q ss_pred HHHHHHHHHHh---------------CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCch
Q 015095 222 TNKIVDNIEDR---------------GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFD 286 (413)
Q Consensus 222 ~~~iv~~l~~~---------------~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFd 286 (413)
.+++.+.|+++ +.|.++++|||||+..|..... .. +|++||.. -++||-
T Consensus 42 ~~~l~~~L~~~g~~v~~~~~~~~~~~~~DlvIvlGGDGT~L~aa~~~~-----~~-~PilGIN~----------G~lGFL 105 (278)
T 1z0s_A 42 VKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRILQKLK-----RC-PPIFGINT----------GRVGLL 105 (278)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCGGGGGSSEEEEEECHHHHHHHHTTCS-----SC-CCEEEEEC----------SSSCTT
T ss_pred HHHHHHHHHHCCCEEEEccccccccCCCCEEEEECCCHHHHHHHHHhC-----CC-CcEEEECC----------CCCccc
Confidence 66777777776 4588999999999966553321 33 89999974 288988
Q ss_pred hHH--HHHHHHHHHHHH
Q 015095 287 TAV--EEAQRAINAAHV 301 (413)
Q Consensus 287 TAv--~~~~~~i~~i~~ 301 (413)
|.+ +.+.++++.+..
T Consensus 106 t~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 106 THASPENFEVELKKAVE 122 (278)
T ss_dssp CCBBTTBCHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHh
Confidence 766 334556666544
No 20
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=83.64 E-value=26 Score=31.91 Aligned_cols=174 Identities=7% Similarity=0.012 Sum_probs=92.9
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCC-CCcH
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDT 222 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~-~~d~ 222 (413)
..+|+++.....-|=...++.++.+.+.+ ++ .++.-+ ..+.. ....
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~~ 50 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQA-LN-VTVEYR-------------------------------GAAQYDIQEQ 50 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHH-HT-CEEEEE-------------------------------ECSSSCHHHH
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHH-cC-CEEEEe-------------------------------CCCcCCHHHH
Confidence 45899999888888888899998887754 22 222110 11111 1234
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCccc--ccccCchhHHHHHHHHHHHHH
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDTAVEEAQRAINAAH 300 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gt--D~S~GFdTAv~~~~~~i~~i~ 300 (413)
.+.++.+...++|++++.+.+.... ....+.+.+.+ ++||.+ |++++.. ..++++|-. .....+.+.+.
T Consensus 51 ~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~d~~-~~g~~~~~~l~ 121 (305)
T 3g1w_A 51 ITVLEQAIAKNPAGIAISAIDPVEL--TDTINKAVDAG--IPIVLF----DSGAPDSHAHSFLGTNNY-NAGMNAAYKMA 121 (305)
T ss_dssp HHHHHHHHHHCCSEEEECCSSTTTT--HHHHHHHHHTT--CCEEEE----SSCCTTSCCSCEEECCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEcCCCHHHH--HHHHHHHHHCC--CcEEEE----CCCCCCCceeEEECcCHH-HHHHHHHHHHH
Confidence 5677888889999999998776521 11223334445 556654 4555432 245666542 12223333333
Q ss_pred HhhhccCCcEEEEEcCC------CCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCC
Q 015095 301 VEVESVENGVGIVKLMG------RYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENG 364 (413)
Q Consensus 301 ~~A~s~~~rv~iVEvMG------R~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~ 364 (413)
....++ ++|.++--.+ |..||........- ..+...+.+..++.+ .-.+.+++.++++.
T Consensus 122 ~~~~g~-~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~ 186 (305)
T 3g1w_A 122 ELLDGE-GEVAVITLPNQLNHQERTTGFKETLEAEFP-AIEVIAVEDGRGDSL---HSRRVAHQLLEDYP 186 (305)
T ss_dssp HHTTTC-EEEEEEECTTCHHHHHHHHHHHHHHHHHCT-TEEEEEEEECTTCHH---HHHHHHHHHHHHCT
T ss_pred HHhCCC-cEEEEEeCCCcccHHHHHHHHHHHHHhhCC-CCEEEEEecCCCCHH---HHHHHHHHHHHhCC
Confidence 332243 5688886443 33455543332111 234444444445443 44555666666543
No 21
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=83.64 E-value=0.28 Score=46.40 Aligned_cols=53 Identities=25% Similarity=0.348 Sum_probs=34.3
Q ss_pred hCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHH--HHHHHHHHHHH
Q 015095 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAH 300 (413)
Q Consensus 232 ~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv--~~~~~~i~~i~ 300 (413)
.+.|.++++|||||+..+..... + .++++||+. | |.||-|.+ +.+.++++.+.
T Consensus 40 ~~~D~vv~~GGDGTll~~a~~~~-----~-~~PilGIn~-------G---~~Gfl~~~~~~~~~~al~~i~ 94 (258)
T 1yt5_A 40 VTADLIVVVGGDGTVLKAAKKAA-----D-GTPMVGFKA-------G---RLGFLTSYTLDEIDRFLEDLR 94 (258)
T ss_dssp BCCSEEEEEECHHHHHHHHTTBC-----T-TCEEEEEES-------S---SCCSSCCBCGGGHHHHHHHHH
T ss_pred CCCCEEEEEeCcHHHHHHHHHhC-----C-CCCEEEEEC-------C---CCCccCcCCHHHHHHHHHHHH
Confidence 37899999999999876554321 3 688999972 2 44665544 23444555443
No 22
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=77.33 E-value=41 Score=30.24 Aligned_cols=129 Identities=7% Similarity=0.032 Sum_probs=71.6
Q ss_pred CCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcH
Q 015095 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT 222 (413)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~ 222 (413)
+..+||++...-.-|-...++.++.+.+.+ ++ .++.- ..+.......
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~ 50 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIER-LG-GTAIA-------------------------------LDAGRNDQTQ 50 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHH-TT-CEEEE-------------------------------EECTTCHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEEE-------------------------------EcCCCCHHHH
Confidence 446899999877777777888888877753 32 12211 1111111234
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHHHHHHh
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVE 302 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i~~~ 302 (413)
.+.++.+...++|++++.+.+.... ....+.+.+.+ ++||.+ |++.+....++++|-. .....+.+.+...
T Consensus 51 ~~~~~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~----~~~~~~~~~~V~~D~~-~~g~~~~~~l~~~ 121 (291)
T 3l49_A 51 VSQIQTLIAQKPDAIIEQLGNLDVL--NPWLQKINDAG--IPLFTV----DTATPHAINNTTSNNY-SIGAELALQMVAD 121 (291)
T ss_dssp HHHHHHHHHHCCSEEEEESSCHHHH--HHHHHHHHHTT--CCEEEE----SCCCTTCSEEEEECHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCChhhh--HHHHHHHHHCC--CcEEEe----cCCCCCcCceEecChH-HHHHHHHHHHHHH
Confidence 5678888899999999998874322 22334455555 556665 3333332335555532 1122233333333
Q ss_pred hhccCCcEEEEE
Q 015095 303 VESVENGVGIVK 314 (413)
Q Consensus 303 A~s~~~rv~iVE 314 (413)
..++ ++|.++.
T Consensus 122 ~~g~-~~i~~i~ 132 (291)
T 3l49_A 122 LGGK-GNVLVFN 132 (291)
T ss_dssp HTTC-EEEEEEC
T ss_pred cCCC-ceEEEEe
Confidence 3454 5687773
No 23
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=75.09 E-value=3.9 Score=39.59 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCc
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 277 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~ 277 (413)
..++++.+...+.|.++++|||||+..+..-. .+.+.++++.+||.==-||+.
T Consensus 69 a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~~l---~~~~~~~pl~iIP~GT~N~lA 121 (337)
T 2qv7_A 69 ATLEAERAMHENYDVLIAAGGDGTLNEVVNGI---AEKPNRPKLGVIPMGTVNDFG 121 (337)
T ss_dssp HHHHHHHHTTTTCSEEEEEECHHHHHHHHHHH---TTCSSCCEEEEEECSSCCHHH
T ss_pred HHHHHHHHhhcCCCEEEEEcCchHHHHHHHHH---HhCCCCCcEEEecCCcHhHHH
Confidence 33445555556789999999999987755432 223567899999986667765
No 24
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=74.98 E-value=24 Score=31.83 Aligned_cols=184 Identities=11% Similarity=-0.012 Sum_probs=97.8
Q ss_pred CCeeEEEEccCC-CCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCC-CC
Q 015095 143 DEVRACIVTCGG-LCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GH 220 (413)
Q Consensus 143 ~~~~iaIvtsGG-~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~-~~ 220 (413)
+..+||++...- .-|-...++.++-+.+.+. ++..+.-.. ...... ..
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-~g~~~~~~~-----------------------------~~~~~~~~~ 56 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTY-SDFNISANI-----------------------------THYDPYDYN 56 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHT-GGGCEEEEE-----------------------------EEECSSCHH
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHH-HhCCeEEEE-----------------------------EcCCCCCHH
Confidence 456899998776 7788888888888777542 111111100 001111 12
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcc-hHHHHHHHHHHHHcCCCceeeeeeccccCCCccc--ccccCchh--HHHHHHHH
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGT-QKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDT--AVEEAQRA 295 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS-~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gt--D~S~GFdT--Av~~~~~~ 295 (413)
...+.++.+...++|++++.+-+.. ... +.+.+.+.+ ++||.+ |++++.. ..++++|- +...+++.
T Consensus 57 ~~~~~i~~l~~~~vdgiii~~~~~~~~~~---~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~~~~g~~a~~~ 127 (304)
T 3gbv_A 57 SFVATSQAVIEEQPDGVMFAPTVPQYTKG---FTDALNELG--IPYIYI----DSQIKDAPPLAFFGQNSHQSGYFAARM 127 (304)
T ss_dssp HHHHHHHHHHTTCCSEEEECCSSGGGTHH---HHHHHHHHT--CCEEEE----SSCCTTSCCSEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEECCCChHHHHH---HHHHHHHCC--CeEEEE----eCCCCCCCceEEEecChHHHHHHHHHH
Confidence 2356678888899999999988754 222 223334445 556654 4444432 23555543 33333333
Q ss_pred HHHHHHhhhccCCcEEEEEc-----------CCCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCC
Q 015095 296 INAAHVEVESVENGVGIVKL-----------MGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENG 364 (413)
Q Consensus 296 i~~i~~~A~s~~~rv~iVEv-----------MGR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~ 364 (413)
+ ...... +++|.++-. .-|..||........- ..+...+.+..++.+ .-.+.+++-++++.
T Consensus 128 l---~~~g~~-~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~-~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~ 199 (304)
T 3gbv_A 128 L---MLLAVN-DREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHP-ACNILELNLHADLNI---EDSRMLDDFFREHP 199 (304)
T ss_dssp H---HHHSTT-CSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCT-TSEEEEEEEESSCSS---CHHHHHHHHHHHCT
T ss_pred H---HHHhCC-CCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCC-CcEEEEeeecCCCHH---HHHHHHHHHHHhCC
Confidence 2 222111 256887751 3466677765544322 344555545556655 34455666565542
Q ss_pred --cEEEEEeCC
Q 015095 365 --HMVIVVAEG 373 (413)
Q Consensus 365 --~~vIvvaEG 373 (413)
.+|++.+..
T Consensus 200 ~~~ai~~~~d~ 210 (304)
T 3gbv_A 200 DVKHGITFNSK 210 (304)
T ss_dssp TCCEEEESSSC
T ss_pred CeEEEEEcCcc
Confidence 466665554
No 25
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=74.51 E-value=1.6 Score=43.87 Aligned_cols=129 Identities=18% Similarity=0.175 Sum_probs=69.3
Q ss_pred ccccCCCCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchh--ccCCCeeeCChhhHhhhhhcCCceee
Q 015095 137 KVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRG--FYSKNTLTLSPKVVNDIHKRGGTILR 214 (413)
Q Consensus 137 ~~~~~~~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~G--L~~~~~~~Lt~~~V~~i~~~GGs~LG 214 (413)
++.......+|+||+= -..|.+-..++.+++.|... +.+||-=..=.+- +.+. ... ..+... +-
T Consensus 31 ~l~w~~~~k~I~iv~K-~~~~~~~~~~~~l~~~L~~~--~~~V~ve~~~~~~~~~~~~----~~~---~~~~~~----~~ 96 (365)
T 3pfn_A 31 RLTWNKSPKSVLVIKK-MRDASLLQPFKELCTHLMEE--NMIVYVEKKVLEDPAIASD----ESF---GAVKKK----FC 96 (365)
T ss_dssp BEEESSCCCEEEEEEC-TTCGGGHHHHHHHHHHHHHT--SCEEEEEHHHHHSHHHHHC----STT---HHHHHH----CE
T ss_pred ccccCCCCCEEEEEec-CCCHHHHHHHHHHHHHHHHC--CCEEEEehHHhhhhccccc----ccc---cccccc----cc
Confidence 3333344558999984 13577888899999888642 3566532211100 0000 000 000000 00
Q ss_pred ecCCCCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHH--HH
Q 015095 215 TSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE--EA 292 (413)
Q Consensus 215 TsR~~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~--~~ 292 (413)
+.+ .+++.+ ..++|.++++|||||+-.|..+.. +..++|+||=. -++||-|-++ .+
T Consensus 97 ~~~--~~~~~~-----~~~~DlvI~lGGDGT~L~aa~~~~-----~~~~PvlGiN~----------G~LGFLt~~~~~~~ 154 (365)
T 3pfn_A 97 TFR--EDYDDI-----SNQIDFIICLGGDGTLLYASSLFQ-----GSVPPVMAFHL----------GSLGFLTPFSFENF 154 (365)
T ss_dssp EEC--TTTCCC-----TTTCSEEEEESSTTHHHHHHHHCS-----SSCCCEEEEES----------SSCTTTCCEESTTH
T ss_pred ccc--cChhhc-----ccCCCEEEEEcChHHHHHHHHHhc-----cCCCCEEEEcC----------CCCccceeecHHHH
Confidence 001 011111 247899999999999877766542 45678999942 2888877543 35
Q ss_pred HHHHHHHHH
Q 015095 293 QRAINAAHV 301 (413)
Q Consensus 293 ~~~i~~i~~ 301 (413)
.++++.+..
T Consensus 155 ~~~l~~vl~ 163 (365)
T 3pfn_A 155 QSQVTQVIE 163 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 556665543
No 26
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=74.44 E-value=9.1 Score=37.02 Aligned_cols=53 Identities=25% Similarity=0.282 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc--CCCceeeeeeccccCCCc
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR--GLQVAVAGIPKTIDNDIA 277 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~--~~~i~vvgIPkTIDNDI~ 277 (413)
..++++.+...+.|.++++|||||+..+..-. .++ +.++++..||.==-||+.
T Consensus 71 ~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l---~~~~~~~~~plgiiP~Gt~N~fa 125 (332)
T 2bon_A 71 AARYVEEARKFGVATVIAGGGDGTINEVSTAL---IQCEGDDIPALGILPLGTANDFA 125 (332)
T ss_dssp HHHHHHHHHHHTCSEEEEEESHHHHHHHHHHH---HHCCSSCCCEEEEEECSSSCHHH
T ss_pred HHHHHHHHHhcCCCEEEEEccchHHHHHHHHH---hhcccCCCCeEEEecCcCHHHHH
Confidence 34445555556899999999999987755433 222 456788889976556654
No 27
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=73.87 E-value=1.6 Score=42.09 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=24.6
Q ss_pred HhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeec
Q 015095 231 DRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (413)
Q Consensus 231 ~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPk 270 (413)
..+.|.++++|||||+..|...... . .++++||+.
T Consensus 73 ~~~~d~vi~~GGDGT~l~a~~~~~~---~--~~pvlgi~~ 107 (307)
T 1u0t_A 73 ADGCELVLVLGGDGTFLRAAELARN---A--SIPVLGVNL 107 (307)
T ss_dssp ---CCCEEEEECHHHHHHHHHHHHH---H--TCCEEEEEC
T ss_pred ccCCCEEEEEeCCHHHHHHHHHhcc---C--CCCEEEEeC
Confidence 3578999999999998876655432 2 468899973
No 28
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=72.41 E-value=18 Score=34.03 Aligned_cols=100 Identities=16% Similarity=0.307 Sum_probs=60.4
Q ss_pred ccccCCCCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccC---------------CCeeeCChhh
Q 015095 137 KVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS---------------KNTLTLSPKV 201 (413)
Q Consensus 137 ~~~~~~~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~---------------~~~~~Lt~~~ 201 (413)
....+....+-+++.++|+-+- .++.+. +.. .-++++-.|..=|++ +++--++++.
T Consensus 13 ~~~~~~~~~~~~lIv~ng~~~~---~~~~~~----~~~--~~~i~aDgGa~~l~~~~~~~~~~~~Pd~ivGD~DSi~~~~ 83 (247)
T 3s4y_A 13 NLYFQGGNLKYCLVILNQPLDN---YFRHLW----NKA--LLRACADGGANRLYDITEGERESFLPEFINGDFDSIRPEV 83 (247)
T ss_dssp -------CCCEEEEECSSCCCT---THHHHH----HHC--SCEEEETTHHHHHHHHTTTCGGGCCCSEEEECCSSSCHHH
T ss_pred cccccCCCCCEEEEEECCcchH---HHHHHH----hhC--CEEEEEchHHHHHHHhccccccCCCccEEEcCCcCCCHHH
Confidence 3333444556777778888872 333333 333 357889888766554 2444566666
Q ss_pred HhhhhhcCCceeeecC-CCCcHHHHHHHHHHh------CCcEEEEEcCCcc
Q 015095 202 VNDIHKRGGTILRTSR-GGHDTNKIVDNIEDR------GINQVYIIGGDGT 245 (413)
Q Consensus 202 V~~i~~~GGs~LGTsR-~~~d~~~iv~~l~~~------~Id~LivIGGdgS 245 (413)
.+.+...|-.++-..- ..-|++++++.+.+. +.+-++++|+.|.
T Consensus 84 ~~~~~~~~~~i~~~peKD~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa~GG 134 (247)
T 3s4y_A 84 REYYATKGCELISTPDQDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAG 134 (247)
T ss_dssp HHHHHHTTCEEEECCCTTSCHHHHHHHHHHHHHHHTTCCCSEEEEECCSSS
T ss_pred HHHHHhcCCEEEECCCCCcCHHHHHHHHHHHhhhhccCCCCEEEEEecCCC
Confidence 6667666655553221 124788888877664 7899999999996
No 29
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=71.02 E-value=16 Score=34.40 Aligned_cols=85 Identities=12% Similarity=0.029 Sum_probs=52.3
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCC-CCcH
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDT 222 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~-~~d~ 222 (413)
..+||++...-.-|=...++.++.+.+.+ ++ .+++ +..+.. ....
T Consensus 68 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 113 (344)
T 3kjx_A 68 VNLVAVIIPSLSNMVFPEVLTGINQVLED-TE-LQPV--------------------------------VGVTDYLPEKE 113 (344)
T ss_dssp CSEEEEEESCSSSSSHHHHHHHHHHHHTS-SS-SEEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCCHHHH
Confidence 34899998766667777888888777642 22 2221 111111 1224
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
.+.++.|...++|++++.+-+.+-. +.+.+.+.+ +++|.+
T Consensus 114 ~~~i~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~--iPvV~i 153 (344)
T 3kjx_A 114 EKVLYEMLSWRPSGVIIAGLEHSEA----ARAMLDAAG--IPVVEI 153 (344)
T ss_dssp HHHHHHHHTTCCSEEEEECSCCCHH----HHHHHHHCS--SCEEEE
T ss_pred HHHHHHHHhCCCCEEEEECCCCCHH----HHHHHHhCC--CCEEEE
Confidence 5677888889999999998776542 233444455 456655
No 30
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=70.54 E-value=63 Score=29.34 Aligned_cols=42 Identities=7% Similarity=0.200 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
...++.+.+...++|++++.+.+.+... .+.+.+.+ ++||.+
T Consensus 53 ~~~~~~~~l~~~~vdGiIi~~~~~~~~~----~~~l~~~~--iPvV~~ 94 (294)
T 3qk7_A 53 KYQSLIHLVETRRVDALIVAHTQPEDFR----LQYLQKQN--FPFLAL 94 (294)
T ss_dssp CCHHHHHHHHHTCCSEEEECSCCSSCHH----HHHHHHTT--CCEEEE
T ss_pred hHHHHHHHHHcCCCCEEEEeCCCCChHH----HHHHHhCC--CCEEEE
Confidence 3467788899999999999998765422 23344445 456644
No 31
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=70.50 E-value=6.2 Score=38.75 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCC
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI 276 (413)
.++++++.+++++.|.++-|||--.++.|..++-. ++ +++|.||-|--.|-
T Consensus 74 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~---~~--~p~i~IPTTa~tgS 124 (370)
T 1jq5_A 74 EVERIANIARKAEAAIVIGVGGGKTLDTAKAVADE---LD--AYIVIVPTAASTDA 124 (370)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---HT--CEEEEEESSCCSSC
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHh---cC--CCEEEeccccCCCc
Confidence 46788899999999999999998889988888732 24 78999999954443
No 32
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=70.30 E-value=57 Score=30.42 Aligned_cols=174 Identities=13% Similarity=0.140 Sum_probs=88.1
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC-CcH
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDT 222 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~-~d~ 222 (413)
..+||++...-.-|-...++.++-..+.+ ++ .++. +..+... ...
T Consensus 62 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 107 (339)
T 3h5o_A 62 SRTVLVLIPSLANTVFLETLTGIETVLDA-AG-YQML--------------------------------IGNSHYDAGQE 107 (339)
T ss_dssp -CEEEEEESCSTTCTTHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCChHHH
Confidence 34899998776677778888888777753 32 2221 1111111 223
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchh--HHHHHHHHHHHHH
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT--AVEEAQRAINAAH 300 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdT--Av~~~~~~i~~i~ 300 (413)
.+.++.|...++|++++.+-+.+-. +.+.+.+.+ +++|.+=...+.+ ..++++|- +...+++ .+.
T Consensus 108 ~~~~~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~--iPvV~~~~~~~~~----~~~V~~D~~~~~~~a~~---~L~ 174 (339)
T 3h5o_A 108 LQLLRAYLQHRPDGVLITGLSHAEP----FERILSQHA--LPVVYMMDLADDG----RCCVGFSQEDAGAAITR---HLL 174 (339)
T ss_dssp HHHHHHHHTTCCSEEEEECSCCCTT----HHHHHHHTT--CCEEEEESCCSSS----CCEEECCHHHHHHHHHH---HHH
T ss_pred HHHHHHHHcCCCCEEEEeCCCCCHH----HHHHHhcCC--CCEEEEeecCCCC----CeEEEECHHHHHHHHHH---HHH
Confidence 5677888889999999998765542 223334445 5566552221111 11555553 2333333 222
Q ss_pred HhhhccCCcEEEEEcC------CCCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCC--cEEEEE
Q 015095 301 VEVESVENGVGIVKLM------GRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENG--HMVIVV 370 (413)
Q Consensus 301 ~~A~s~~~rv~iVEvM------GR~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~--~~vIvv 370 (413)
. .++ +++.++--. -|..||..+.....-...+..++.+..++.+ .-.+.+++-++.+. -+|++.
T Consensus 175 ~--~G~-~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~ai~~~ 246 (339)
T 3h5o_A 175 S--RGK-RRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQPSSMQ---MGADMLDRALAERPDCDALFCC 246 (339)
T ss_dssp H--TTC-CSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHH---HHHHHHHHHHHHCTTCCEEEES
T ss_pred H--CCC-CeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEecCCCCHH---HHHHHHHHHHcCCCCCcEEEEC
Confidence 1 254 568877432 2445665543321110123333444555543 33444555555542 355443
No 33
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=68.86 E-value=3.9 Score=39.15 Aligned_cols=54 Identities=22% Similarity=0.342 Sum_probs=37.6
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCc
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 277 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~ 277 (413)
.+..++++.+.+ +.|.++++|||||+..+.. .+...+.++++..||.==-||+.
T Consensus 51 ~~a~~~~~~~~~-~~d~vv~~GGDGTl~~v~~---~l~~~~~~~~l~iiP~Gt~N~~a 104 (304)
T 3s40_A 51 GDATKYCQEFAS-KVDLIIVFGGDGTVFECTN---GLAPLEIRPTLAIIPGGTCNDFS 104 (304)
T ss_dssp THHHHHHHHHTT-TCSEEEEEECHHHHHHHHH---HHTTCSSCCEEEEEECSSCCHHH
T ss_pred chHHHHHHHhhc-CCCEEEEEccchHHHHHHH---HHhhCCCCCcEEEecCCcHHHHH
Confidence 345556665544 8899999999999876432 22222356889999987777775
No 34
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=68.83 E-value=58 Score=30.28 Aligned_cols=122 Identities=8% Similarity=0.021 Sum_probs=67.9
Q ss_pred CeeEEEEccC--CCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC-C
Q 015095 144 EVRACIVTCG--GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-H 220 (413)
Q Consensus 144 ~~~iaIvtsG--G~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~-~ 220 (413)
..+||++... -.-|-...++.++.+.+.+ ++ .++. +..+... .
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~ 106 (338)
T 3dbi_A 61 TQTLGLVVTNTLYHGIYFSELLFHAARMAEE-KG-RQLL--------------------------------LADGKHSAE 106 (338)
T ss_dssp CSEEEEEECTTTTSTTHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTSHH
T ss_pred CCEEEEEecCCcccChhHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCChH
Confidence 4589999876 5667777888888777753 22 2221 1111111 1
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccc-cccCchh--HHHHHHHHHH
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDT--AVEEAQRAIN 297 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD-~S~GFdT--Av~~~~~~i~ 297 (413)
...+.++.|...++|++++.+.+.+... +.+.+++.+ +++|.+ |.+++..+ .++++|- +...+++
T Consensus 107 ~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~~~~~~~~~--iPvV~~----~~~~~~~~~~~V~~D~~~~~~~a~~--- 174 (338)
T 3dbi_A 107 EERQAIQYLLDLRCDAIMIYPRFLSVDE---IDDIIDAHS--QPIMVL----NRRLRKNSSHSVWCDHKQTSFNAVA--- 174 (338)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSSSCHHH---HHHHHHHCS--SCEEEE----SSCCSSSGGGEECBCHHHHHHHHHH---
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCChHH---HHHHHHcCC--CCEEEE----cCCCCCCCCCEEEEChHHHHHHHHH---
Confidence 2345778888999999999987766432 333344444 556644 45544322 3455553 2233333
Q ss_pred HHHHhhhccCCcEEEEE
Q 015095 298 AAHVEVESVENGVGIVK 314 (413)
Q Consensus 298 ~i~~~A~s~~~rv~iVE 314 (413)
.+.. .++ ++|.++-
T Consensus 175 ~L~~--~G~-~~I~~i~ 188 (338)
T 3dbi_A 175 ELIN--AGH-QEIAFLT 188 (338)
T ss_dssp HHHH--TTC-CSEEEEC
T ss_pred HHHH--CCC-CEEEEEe
Confidence 2221 254 5687774
No 35
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=68.43 E-value=1.5 Score=44.42 Aligned_cols=54 Identities=20% Similarity=0.355 Sum_probs=35.5
Q ss_pred hCCcEEEEEcCCcchHHHHHHHHHHHHcCCCc-eeeeeeccccCCCcccccccCchhHHH--HHHHHHHHHH
Q 015095 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQV-AVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAAH 300 (413)
Q Consensus 232 ~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i-~vvgIPkTIDNDI~gtD~S~GFdTAv~--~~~~~i~~i~ 300 (413)
.+.|.++++|||||+..|..... ...+ +|+||+. | ++||-|.++ .+.++++.+.
T Consensus 113 ~~~DlVIvlGGDGTlL~aa~~~~-----~~~vpPiLGIN~-------G---~lGFLt~~~~~~~~~al~~il 169 (388)
T 3afo_A 113 NRTDLLVTLGGDGTILHGVSMFG-----NTQVPPVLAFAL-------G---TLGFLSPFDFKEHKKVFQEVI 169 (388)
T ss_dssp HHCSEEEEEESHHHHHHHHHTTT-----TSCCCCEEEEEC-------S---SCCSSCCEEGGGHHHHHHHHH
T ss_pred cCCCEEEEEeCcHHHHHHHHHhc-----ccCCCeEEEEEC-------C---CcccCCcCChHHHHHHHHHHh
Confidence 45899999999999987765432 2346 7999962 2 667776543 2344444443
No 36
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=67.16 E-value=54 Score=29.39 Aligned_cols=123 Identities=14% Similarity=0.067 Sum_probs=70.2
Q ss_pred CCeeEEEEccC-----CCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecC
Q 015095 143 DEVRACIVTCG-----GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSR 217 (413)
Q Consensus 143 ~~~~iaIvtsG-----G~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR 217 (413)
+..+||++... -.-|-...+++++.+.+.+ ++ .++.- ..+.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~ 52 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHV-EG-YALYM--------------------------------STGE 52 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHH-TT-CEEEE--------------------------------CCCC
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHH-cC-CEEEE--------------------------------EeCC
Confidence 34589999987 6778888888888887753 32 22211 0111
Q ss_pred C-CCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCccc--ccccCchh--HHHHH
Q 015095 218 G-GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDT--AVEEA 292 (413)
Q Consensus 218 ~-~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gt--D~S~GFdT--Av~~~ 292 (413)
. .....++++.+...++|++++.+.+.+-. ..+.+.+.+ ++||.+ |++.+.. -.++++|- +...+
T Consensus 53 ~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~----~~~~~~~~~~~~V~~D~~~~g~~a 122 (292)
T 3k4h_A 53 TEEEIFNGVVKMVQGRQIGGIILLYSRENDR----IIQYLHEQN--FPFVLI----GKPYDRKDEITYVDNDNYTAAREV 122 (292)
T ss_dssp SHHHHHHHHHHHHHTTCCCEEEESCCBTTCH----HHHHHHHTT--CCEEEE----SCCSSCTTTSCEEECCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEeCCCCChH----HHHHHHHCC--CCEEEE----CCCCCCCCCCCEEEECcHHHHHHH
Confidence 1 12235678888889999999998775543 233444445 456644 4444332 23455443 33333
Q ss_pred HHHHHHHHHhhhccCCcEEEEEc
Q 015095 293 QRAINAAHVEVESVENGVGIVKL 315 (413)
Q Consensus 293 ~~~i~~i~~~A~s~~~rv~iVEv 315 (413)
++.+-. .++ ++|.++--
T Consensus 123 ~~~L~~-----~G~-~~i~~i~~ 139 (292)
T 3k4h_A 123 AEYLIS-----LGH-KQIAFIGG 139 (292)
T ss_dssp HHHHHH-----TTC-CCEEEEES
T ss_pred HHHHHH-----CCC-ceEEEEeC
Confidence 333321 244 56877753
No 37
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=65.76 E-value=80 Score=28.77 Aligned_cols=178 Identities=15% Similarity=0.144 Sum_probs=94.0
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcHH
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~ 223 (413)
+.+||++...-.-|-...+++++.+.+.+ ++ .++.- ..+........
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~ 48 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAES-LG-AKVFV-------------------------------QSANGNEETQM 48 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHH-TS-CEEEE-------------------------------EECTTCHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEEE-------------------------------ECCCCCHHHHH
Confidence 35899999877788888899998887754 32 22211 11111112345
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCccc--ccccCchh--HHHHHHHHHHHH
Q 015095 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDT--AVEEAQRAINAA 299 (413)
Q Consensus 224 ~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gt--D~S~GFdT--Av~~~~~~i~~i 299 (413)
+.++.+...++|++++.+-+.... ....+.+.+.+ ++||.+ |++++.. +.++++|- +...+++. +
T Consensus 49 ~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~~~~g~~a~~~---L 117 (313)
T 3m9w_A 49 SQIENMINRGVDVLVIIPYNGQVL--SNVVKEAKQEG--IKVLAY----DRMINDADIDFYISFDNEKVGELQAKA---L 117 (313)
T ss_dssp HHHHHHHHTTCSEEEEECSSTTSC--HHHHHHHHTTT--CEEEEE----SSCCTTSCCSEEEEECHHHHHHHHHHH---H
T ss_pred HHHHHHHHcCCCEEEEeCCChhhh--HHHHHHHHHCC--CeEEEE----CCcCCCCCceEEEecCHHHHHHHHHHH---H
Confidence 678888899999999999876531 11223333334 667755 4555433 34677664 23333332 2
Q ss_pred HHhhhccCCcEEEEEc-CC------CCcchHHHHHhhhcCCccEEEcCCC---CCCCCChhhHHHHHHHHHHhC-C--cE
Q 015095 300 HVEVESVENGVGIVKL-MG------RYSGFISMYATLASRDVDCCLIPES---PFYLEGPGGLFEFIERQLKEN-G--HM 366 (413)
Q Consensus 300 ~~~A~s~~~rv~iVEv-MG------R~sG~LA~~aaLA~~~ad~ilIPE~---pf~l~~~~~~~e~i~~r~~~~-~--~~ 366 (413)
. +..++ ++|.++-- .+ |..||......... .+++.++++. .++. ..-.+.+++.++.. . -+
T Consensus 118 ~-~~~G~-~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~a 191 (313)
T 3m9w_A 118 V-DIVPQ-GNYFLMGGSPVDNNAKLFRAGQMKVLKPYVD-SGKIKVVGDQWVDGWLP---ENALKIMENALTANNNKIDA 191 (313)
T ss_dssp H-HHCSS-EEEEEEESCTTCHHHHHHHHHHHHHHHHHHH-TTSEEEEEEEECGGGCH---HHHHHHHHHHHHHTTTCCCE
T ss_pred H-HhCCC-CcEEEEECCCCCccHHHHHHHHHHHHHhhcc-CCCEEEEeeccCCCcCH---HHHHHHHHHHHHhCCCCeeE
Confidence 2 12344 46777742 22 44566654443321 2345554432 2222 24455566666654 2 35
Q ss_pred EEEEe
Q 015095 367 VIVVA 371 (413)
Q Consensus 367 vIvva 371 (413)
+++.+
T Consensus 192 i~~~~ 196 (313)
T 3m9w_A 192 VVASN 196 (313)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 54443
No 38
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=64.19 E-value=6.4 Score=39.32 Aligned_cols=55 Identities=9% Similarity=0.169 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcC----------------CCceeeeeeccccCC
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG----------------LQVAVAGIPKTIDND 275 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~----------------~~i~vvgIPkTIDND 275 (413)
.++++++.+++.++|.++-|||--.++.|..++-.....+ -.+++|.||-|--.|
T Consensus 94 ~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTagtg 164 (408)
T 1oj7_A 94 TLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATG 164 (408)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCSSC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCCchh
Confidence 4678899999999999999999888998888775432101 347899999996444
No 39
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=62.50 E-value=10 Score=37.62 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHc-------------CCCceeeeeeccccCCC
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTIDNDI 276 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~-------------~~~i~vvgIPkTIDNDI 276 (413)
+..+++++.+++.+.|.++-|||--+++.|..++-..... .-.+++|.||-|--.|-
T Consensus 75 ~~v~~~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtgS 144 (383)
T 3ox4_A 75 TAVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGTAS 144 (383)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSCCT
T ss_pred HHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCCchh
Confidence 4578899999999999999999988899888887654211 11478999999986544
No 40
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=60.84 E-value=11 Score=37.83 Aligned_cols=52 Identities=13% Similarity=0.230 Sum_probs=42.5
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCC
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI 276 (413)
+..+++++.+++.+.|.++-|||--+++.|..++-. ..+++|.||-|-..|-
T Consensus 93 ~~v~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~~-----~~~p~i~IPTTagtgS 144 (387)
T 3uhj_A 93 SEIERVRKVAIEHGSDILVGVGGGKTADTAKIVAID-----TGARIVIAPTIASTDA 144 (387)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH-----TTCEEEECCSSCCCST
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHh-----cCCCEEEecCcccCCc
Confidence 457889999999999999999998889988888732 2478999999865444
No 41
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=59.75 E-value=35 Score=32.23 Aligned_cols=173 Identities=14% Similarity=0.119 Sum_probs=88.9
Q ss_pred eeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC-CcHH
Q 015095 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDTN 223 (413)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~-~d~~ 223 (413)
.+||++...-.-|-...++.++-..+.+ ++ .+++ +..+... ....
T Consensus 71 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~~ 116 (355)
T 3e3m_A 71 GFVGLLLPSLNNLHFAQTAQSLTDVLEQ-GG-LQLL--------------------------------LGYTAYSPEREE 116 (355)
T ss_dssp CEEEEEESCSBCHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHHHH
T ss_pred CEEEEEeCCCCchHHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCChHHHH
Confidence 4799998776667777788888777653 22 2221 1111111 2235
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCc-ccccccCchh--HHHHHHHHHHHHH
Q 015095 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA-VIDKSFGFDT--AVEEAQRAINAAH 300 (413)
Q Consensus 224 ~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~-gtD~S~GFdT--Av~~~~~~i~~i~ 300 (413)
++++.|...++|++++.+.+.+-. ..+.+.+.+ +|+|.+ |+... ....++++|- +...+++ .+.
T Consensus 117 ~~~~~l~~~~vdGiI~~~~~~~~~----~~~~l~~~~--iPvV~i----~~~~~~~~~~~V~~D~~~~~~~a~~---~L~ 183 (355)
T 3e3m_A 117 QLVETMLRRRPEAMVLSYDGHTEQ----TIRLLQRAS--IPIVEI----WEKPAHPIGHTVGFSNERAAYDMTN---ALL 183 (355)
T ss_dssp HHHHHHHHTCCSEEEEECSCCCHH----HHHHHHHCC--SCEEEE----SSCCSSCSSEEEECCHHHHHHHHHH---HHH
T ss_pred HHHHHHHhCCCCEEEEeCCCCCHH----HHHHHHhCC--CCEEEE----CCccCCCCCCEEEeChHHHHHHHHH---HHH
Confidence 678888899999999998776643 233344445 556665 21111 1123555543 2333333 222
Q ss_pred HhhhccCCcEEEEEcC--------CCCcchHHHHHhhhcCCcc-EEEcCCCCCCCCChhhHHHHHHHHHHhCC--cEEEE
Q 015095 301 VEVESVENGVGIVKLM--------GRYSGFISMYATLASRDVD-CCLIPESPFYLEGPGGLFEFIERQLKENG--HMVIV 369 (413)
Q Consensus 301 ~~A~s~~~rv~iVEvM--------GR~sG~LA~~aaLA~~~ad-~ilIPE~pf~l~~~~~~~e~i~~r~~~~~--~~vIv 369 (413)
. .++ +++.++--. -|..||..+.....- ..+ .+.+.+.+++.+ .-.+.+++-++... -+|++
T Consensus 184 ~--~G~-r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~-~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~ai~~ 256 (355)
T 3e3m_A 184 A--RGF-RKIVFLGEKDDDWTRGAARRAGFKRAMREAGL-NPDQEIRLGAPPLSIE---DGVAAAELILQEYPDTDCIFC 256 (355)
T ss_dssp H--TTC-CSEEEEEESSCTTSHHHHHHHHHHHHHHHTTS-CSCCEEEESCSSCCHH---HHHHHHHHHHHHCTTCCEEEE
T ss_pred H--CCC-CeEEEEccCcccChhHHHHHHHHHHHHHHCCc-CCCccEEEecCCCCHH---HHHHHHHHHHcCCCCCcEEEE
Confidence 1 354 567777532 244566654433211 122 233444455443 33455555555532 35554
Q ss_pred Ee
Q 015095 370 VA 371 (413)
Q Consensus 370 va 371 (413)
.+
T Consensus 257 ~n 258 (355)
T 3e3m_A 257 VS 258 (355)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 42
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=59.56 E-value=11 Score=37.28 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=42.3
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCC
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI 276 (413)
+..+++++.+++.+.|.++-|||--+++.|..++-. ++ +++|.||-|- .+-
T Consensus 75 ~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~~--~P~i~IPTTa-tgS 125 (364)
T 3iv7_A 75 EVAERARAVATDNEIDLLVCVGGGSTIGLAKAIAMT---TA--LPIVAIPTTY-AGS 125 (364)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHH---HC--CCEEEEECSS-SCG
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhc---cC--CCEEEEcCCc-ccc
Confidence 347888999999999999999999889988888753 24 6799999998 554
No 43
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=59.53 E-value=12 Score=37.00 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcC---------------CCceeeeeeccccCCC
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG---------------LQVAVAGIPKTIDNDI 276 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~---------------~~i~vvgIPkTIDNDI 276 (413)
...+++++.+++.++|.++-|||--.++.|..++-.....+ -.+++|.||-|--.|-
T Consensus 75 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtgS 146 (386)
T 1rrm_A 75 TVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGTAA 146 (386)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSSCCT
T ss_pred HHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCCchh
Confidence 35789999999999999999999888998888876542111 1478999999986554
No 44
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=58.70 E-value=1.1e+02 Score=27.87 Aligned_cols=133 Identities=10% Similarity=0.066 Sum_probs=72.2
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCC-CCcH
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDT 222 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~-~~d~ 222 (413)
..+||++...-.-|-...++.++-+.+.+ ++ .++. +..+.. ....
T Consensus 15 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 60 (303)
T 3kke_A 15 SGTIGLIVPDVNNAVFADMFSGVQMAASG-HS-TDVL--------------------------------LGQIDAPPRGT 60 (303)
T ss_dssp --CEEEEESCTTSTTHHHHHHHHHHHHHH-TT-CCEE--------------------------------EEECCSTTHHH
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCChHHH
Confidence 34788888776677777888888777653 22 1221 111121 1234
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchh--HHHHHHHHHHHHH
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT--AVEEAQRAINAAH 300 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdT--Av~~~~~~i~~i~ 300 (413)
.++++.|...++|++++.+.+.+... ..+.+.+ .++||.+= ++++..-.++++|- +...+++.+ .
T Consensus 61 ~~~~~~l~~~~vdgiI~~~~~~~~~~---~~~~l~~---~iPvV~i~----~~~~~~~~~V~~D~~~~g~~a~~~L---~ 127 (303)
T 3kke_A 61 QQLSRLVSEGRVDGVLLQRREDFDDD---MLAAVLE---GVPAVTIN----SRVPGRVGSVILDDQKGGGIATEHL---I 127 (303)
T ss_dssp HHHHHHHHSCSSSEEEECCCTTCCHH---HHHHHHT---TSCEEEES----CCCTTCCCEEEECHHHHHHHHHHHH---H
T ss_pred HHHHHHHHhCCCcEEEEecCCCCcHH---HHHHHhC---CCCEEEEC----CcCCCCCCEEEECcHHHHHHHHHHH---H
Confidence 57788899999999999998776431 2233343 46677653 33332122445442 333333322 2
Q ss_pred HhhhccCCcEEEEEcC-C------CCcchHHHH
Q 015095 301 VEVESVENGVGIVKLM-G------RYSGFISMY 326 (413)
Q Consensus 301 ~~A~s~~~rv~iVEvM-G------R~sG~LA~~ 326 (413)
. .++ +++.++--. + |..||....
T Consensus 128 ~--~G~-~~I~~i~~~~~~~~~~~R~~Gf~~al 157 (303)
T 3kke_A 128 T--LGH-SRIAFISGTAIHDTAQRRKEGYLETL 157 (303)
T ss_dssp H--TTC-CSEEEEESCSSCHHHHHHHHHHHHHH
T ss_pred H--CCC-CeEEEEeCCCcCccHHHHHHHHHHHH
Confidence 2 354 567777432 2 445666543
No 45
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=57.65 E-value=50 Score=31.22 Aligned_cols=106 Identities=12% Similarity=0.063 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCe-eeCChhhHhhhhhcCCceeeecCC---CCcHHHHHHHHHHhC
Q 015095 158 GINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT-LTLSPKVVNDIHKRGGTILRTSRG---GHDTNKIVDNIEDRG 233 (413)
Q Consensus 158 GmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~-~~Lt~~~V~~i~~~GGs~LGTsR~---~~d~~~iv~~l~~~~ 233 (413)
--+...+.+++.+.+.++..+|.-+..- ..+ ........+.+...|+.+...... ..++...+..+++.+
T Consensus 125 ~~~~~~~~~~~~l~~~~g~~~iaii~~~------~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~ 198 (392)
T 3lkb_A 125 SYSEQVVALLEYIAREKKGAKVALVVHP------SPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAG 198 (392)
T ss_dssp CHHHHHHHHHHHHHHHCTTCEEEEEECS------SHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHhCCCCEEEEEEeC------CchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhcC
Confidence 3345556667766654455566555421 111 111112233455667777665433 357888899999999
Q ss_pred CcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccc
Q 015095 234 INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (413)
Q Consensus 234 Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTI 272 (413)
.|++|+.+.+ ..+..+.+.+++.|+++++++...+.
T Consensus 199 ~dav~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~~~ 234 (392)
T 3lkb_A 199 VEYVVHQNVA---GPVANILKDAKRLGLKMRHLGAHYTG 234 (392)
T ss_dssp CCEEEEESCH---HHHHHHHHHHHHTTCCCEEEECGGGC
T ss_pred CCEEEEecCc---chHHHHHHHHHHcCCCceEEEecCcc
Confidence 9999887633 33555667778889999988875443
No 46
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=57.48 E-value=14 Score=36.33 Aligned_cols=50 Identities=24% Similarity=0.210 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCC
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI 276 (413)
..+++++.+++.+.|.++-+||--+++.|..++-. ++ +++|.||-|- .|-
T Consensus 75 ~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~~--~p~i~IPTTa-tgS 124 (353)
T 3hl0_A 75 VTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIALR---TD--AAQIVIPTTY-AGS 124 (353)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---HC--CEEEEEECSS-CCG
T ss_pred HHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhc---cC--CCEEEEeCCc-hhh
Confidence 46888999999999999999998889988887753 23 7799999997 554
No 47
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=57.39 E-value=12 Score=37.06 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccc
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTI 272 (413)
..+++++.+++.+.|.++-|||--+++.|..++-. ++ +++|.||-|-
T Consensus 77 ~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~~---~~--~p~i~IPTT~ 123 (358)
T 3jzd_A 77 SARDATARAREAGADCAVAVGGGSTTGLGKAIALE---TG--MPIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH---HC--CCEEEEECSS
T ss_pred HHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHhc---cC--CCEEEEeCCc
Confidence 46788999999999999999998889988888753 24 6799999985
No 48
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=56.29 E-value=7.1 Score=38.52 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=41.0
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH-------------cCCCceeeeeecc
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKT 271 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~-------------~~~~i~vvgIPkT 271 (413)
...+++++.+++.+.|.++-|||--.++.|..++-.... ..-.+++|.||-|
T Consensus 85 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 149 (371)
T 1o2d_A 85 DNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTT 149 (371)
T ss_dssp HHHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECS
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCC
Confidence 356788889999999999999999889988887764321 0034789999999
No 49
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=56.21 E-value=15 Score=36.28 Aligned_cols=57 Identities=7% Similarity=0.054 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH------c-------CCCceeeeeeccccCCC
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK------R-------GLQVAVAGIPKTIDNDI 276 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~------~-------~~~i~vvgIPkTIDNDI 276 (413)
...+++++.+++.++|.++-|||--.++.|..++-.... + .-.+++|.||-|--.|-
T Consensus 79 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtgS 148 (387)
T 3bfj_A 79 TNVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTAGTAS 148 (387)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECSTTCCG
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCccc
Confidence 357889999999999999999999889988887754221 1 02478999999985544
No 50
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=54.55 E-value=32 Score=31.47 Aligned_cols=69 Identities=19% Similarity=0.205 Sum_probs=51.5
Q ss_pred CcEEEEEcccchhccC---------CCeeeCChhhHhhhhhcCCceeeecCC--CCcHHHHHHHHHHhCCcEEEEEcCCc
Q 015095 176 VDEILGIEGGYRGFYS---------KNTLTLSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDG 244 (413)
Q Consensus 176 ~~~V~Gi~~G~~GL~~---------~~~~~Lt~~~V~~i~~~GGs~LGTsR~--~~d~~~iv~~l~~~~Id~LivIGGdg 244 (413)
...++|+-.|..=|++ +++-.++++....+...| .++-.... .-|++++++.+.+++.+-++++|+.|
T Consensus 22 ~~~~i~~DgGa~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~-~i~~~p~eKD~TD~e~Al~~a~~~~~~~I~i~Ga~G 100 (212)
T 3l8m_A 22 HEHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQI-EINPYNSEKDDTDLALGIDQAVKRGYRNIDVYGATG 100 (212)
T ss_dssp TSEEEEETHHHHHHHHTTCCCSEEESCCCCSCHHHHHHHHHHT-BCCCCC---CBCHHHHHHHHHHHTTCCEEEEESCSS
T ss_pred CCEEEEECHHHHHHHHCCCCccEEEeCcccCCHHHHHHHhcCC-cEEEECCcCCCCHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 3578999999887754 455567777777777776 65544332 34789999999999999999999999
Q ss_pred c
Q 015095 245 T 245 (413)
Q Consensus 245 S 245 (413)
.
T Consensus 101 g 101 (212)
T 3l8m_A 101 G 101 (212)
T ss_dssp S
T ss_pred C
Confidence 6
No 51
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=54.50 E-value=4.7 Score=40.70 Aligned_cols=50 Identities=16% Similarity=0.144 Sum_probs=39.6
Q ss_pred CcHHHHHHHHHHhCC---cEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccc
Q 015095 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (413)
Q Consensus 220 ~d~~~iv~~l~~~~I---d~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTI 272 (413)
...+++++.+++.++ |.++-+||--.+..|..++-. +...+++|.||-|.
T Consensus 107 ~~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~---~~rgip~I~IPTTl 159 (390)
T 3okf_A 107 ETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAAC---YQRGVDFIQIPTTL 159 (390)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECSH
T ss_pred HHHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHHHHH---hcCCCCEEEeCCCC
Confidence 357899999999999 699999998888887766532 22347899999996
No 52
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=53.56 E-value=1.2e+02 Score=27.05 Aligned_cols=123 Identities=7% Similarity=0.060 Sum_probs=67.8
Q ss_pred CCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcH
Q 015095 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT 222 (413)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~ 222 (413)
+..+||++...-.-|-...++.++.+.+.+ ++ .++.-+. +.......
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~ 53 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARH-KG-YSVLLAN-------------------------------TAEDIVRE 53 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------CTTCHHHH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCCHHHH
Confidence 345899999777777778888888777753 33 2222110 11111224
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccc-cccCchh--HHHHHHHHHHHH
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDT--AVEEAQRAINAA 299 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD-~S~GFdT--Av~~~~~~i~~i 299 (413)
.++++.+...++|++++.+.+.... +.+.+.+ ..+++|.+ |++++..+ .++++|- +...+++ .+
T Consensus 54 ~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~~~~--~~iPvV~~----~~~~~~~~~~~V~~D~~~~g~~a~~---~L 120 (291)
T 3egc_A 54 REAVGQFFERRVDGLILAPSEGEHD----YLRTELP--KTFPIVAV----NRELRIPGCGAVLSENVRGARTAVE---YL 120 (291)
T ss_dssp HHHHHHHHHTTCSEEEECCCSSCCH----HHHHSSC--TTSCEEEE----SSCCCCTTCEEEEECHHHHHHHHHH---HH
T ss_pred HHHHHHHHHCCCCEEEEeCCCCChH----HHHHhhc--cCCCEEEE----ecccCCCCCCEEEECcHHHHHHHHH---HH
Confidence 5678888999999999998876332 2233322 34667744 45444211 3455443 2223333 22
Q ss_pred HHhhhccCCcEEEEE
Q 015095 300 HVEVESVENGVGIVK 314 (413)
Q Consensus 300 ~~~A~s~~~rv~iVE 314 (413)
.. .++ ++|.++-
T Consensus 121 ~~--~G~-~~i~~i~ 132 (291)
T 3egc_A 121 IA--RGH-TRIGAIV 132 (291)
T ss_dssp HH--TTC-CSEEEEC
T ss_pred HH--cCC-CEEEEEe
Confidence 22 244 5677764
No 53
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=53.30 E-value=14 Score=36.74 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=43.3
Q ss_pred CcHHHHHHHHHHhC---CcEEEEEcCCcchHHHHHHHHHHHHc-------------CCCceeeeeeccccCCC
Q 015095 220 HDTNKIVDNIEDRG---INQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTIDNDI 276 (413)
Q Consensus 220 ~d~~~iv~~l~~~~---Id~LivIGGdgS~~~a~~L~e~~~~~-------------~~~i~vvgIPkTIDNDI 276 (413)
..++++++.+++.+ .|.++-+||--++..|..++-..... +-.+++|.||-|--.|-
T Consensus 93 ~~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagtgS 165 (375)
T 3rf7_A 93 VQVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPTVSGTGA 165 (375)
T ss_dssp HHHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEESSCSSCT
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcCCCccch
Confidence 35788899999998 99999999998899988887543110 11478999999875443
No 54
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=52.16 E-value=1.2e+02 Score=26.64 Aligned_cols=121 Identities=13% Similarity=0.146 Sum_probs=65.5
Q ss_pred eeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC-CcHH
Q 015095 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDTN 223 (413)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~-~d~~ 223 (413)
.+||++...-.-|-...++.++-+.+.+ ++ .++ ++-.+... ....
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~--------------------------------~~~~~~~~~~~~~ 49 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNK-AG-YQL--------------------------------LLGYSDYSIEQEE 49 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHH-TS-CEE--------------------------------CCEECTTCHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHH-CC-CEE--------------------------------EEEcCCCCHHHHH
Confidence 4789988766667777778887776653 22 111 01111111 1234
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcc-cccccCchh--HHHHHHHHHHHHH
Q 015095 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV-IDKSFGFDT--AVEEAQRAINAAH 300 (413)
Q Consensus 224 ~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~g-tD~S~GFdT--Av~~~~~~i~~i~ 300 (413)
+.++.+...++|++++.+.+.+-. +.+.+.+.+ +++|.+ |.+.+. .-.++++|- +...+++ .+.
T Consensus 50 ~~~~~l~~~~vdgii~~~~~~~~~----~~~~l~~~~--iPvV~~----~~~~~~~~~~~V~~d~~~~~~~a~~---~L~ 116 (275)
T 3d8u_A 50 KLLSTFLESRPAGVVLFGSEHSQR----THQLLEASN--TPVLEI----AELSSKASYLNIGVDHFEVGKACTR---HLI 116 (275)
T ss_dssp HHHHHHHTSCCCCEEEESSCCCHH----HHHHHHHHT--CCEEEE----SSSCSSSSSEEECBCHHHHHHHHHH---HHH
T ss_pred HHHHHHHhcCCCEEEEeCCCCCHH----HHHHHHhCC--CCEEEE----eeccCCCCCCEEEEChHHHHHHHHH---HHH
Confidence 567888889999999998765532 223344445 556665 333321 113566663 2333333 332
Q ss_pred HhhhccCCcEEEEEc
Q 015095 301 VEVESVENGVGIVKL 315 (413)
Q Consensus 301 ~~A~s~~~rv~iVEv 315 (413)
. .++ +++.++--
T Consensus 117 ~--~G~-~~i~~i~~ 128 (275)
T 3d8u_A 117 E--QGF-KNVGFIGA 128 (275)
T ss_dssp T--TTC-CCEEEEEC
T ss_pred H--CCC-CeEEEEcC
Confidence 2 244 56877753
No 55
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=49.91 E-value=15 Score=36.59 Aligned_cols=57 Identities=9% Similarity=0.098 Sum_probs=43.6
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH-------------cCCCceeeeeeccccCCC
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTIDNDI 276 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~-------------~~~~i~vvgIPkTIDNDI 276 (413)
..++++++.+++.++|.++-|||--++..|..++-.... ..-.+++|.||-|--.|-
T Consensus 88 ~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtgS 157 (407)
T 1vlj_A 88 SKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISATGT 157 (407)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCSSCG
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCcch
Confidence 357889999999999999999999889988888754210 013478999999975443
No 56
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=48.86 E-value=1.3e+02 Score=27.05 Aligned_cols=171 Identities=9% Similarity=0.027 Sum_probs=86.1
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcHH
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~ 223 (413)
..+||++. .-.-|-...++.++-+.+.+ ++ .++.- -.+....+..
T Consensus 12 ~~~Igvi~-~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~~~~~~ 56 (289)
T 3k9c_A 12 SRLLGVVF-ELQQPFHGDLVEQIYAAATR-RG-YDVML--------------------------------SAVAPSRAEK 56 (289)
T ss_dssp -CEEEEEE-ETTCHHHHHHHHHHHHHHHH-TT-CEEEE--------------------------------EEEBTTBCHH
T ss_pred CCEEEEEE-ecCCchHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCCCHHHH
Confidence 34788888 66667777788888777653 22 22211 1111112245
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCccc-ccccCchh--HHHHHHHHHHHHH
Q 015095 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFDT--AVEEAQRAINAAH 300 (413)
Q Consensus 224 ~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gt-D~S~GFdT--Av~~~~~~i~~i~ 300 (413)
+.++.|...++|++++.+.+.+.. ..+.+.+ + ++||.+ |++++.. -.++++|- +...+++.+ .
T Consensus 57 ~~~~~l~~~~vdgiIi~~~~~~~~----~~~~~~~-~--iPvV~i----~~~~~~~~~~~V~~D~~~~~~~a~~~L---~ 122 (289)
T 3k9c_A 57 VAVQALMRERCEAAILLGTRFDTD----ELGALAD-R--VPALVV----ARASGLPGVGAVRGDDVAGITLAVDHL---T 122 (289)
T ss_dssp HHHHHHTTTTEEEEEEETCCCCHH----HHHHHHT-T--SCEEEE----SSCCSSTTSEEEEECHHHHHHHHHHHH---H
T ss_pred HHHHHHHhCCCCEEEEECCCCCHH----HHHHHHc-C--CCEEEE----cCCCCCCCCCEEEeChHHHHHHHHHHH---H
Confidence 677888889999999999877642 2233333 4 667754 4444321 13445442 333333322 2
Q ss_pred HhhhccCCcEEEEEcCC------CCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCC--cEEEEEe
Q 015095 301 VEVESVENGVGIVKLMG------RYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENG--HMVIVVA 371 (413)
Q Consensus 301 ~~A~s~~~rv~iVEvMG------R~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~--~~vIvva 371 (413)
. .++ ++|.++--.. |..||........- ..+..++ +..++.+ .-.+.+++-++.+. -+|++.+
T Consensus 123 ~--~G~-~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~-~~~~~~~-~~~~~~~---~~~~~~~~~l~~~~~~~ai~~~~ 193 (289)
T 3k9c_A 123 E--LGH-RNIAHIDGADAPGGADRRAGFLAAMDRHGL-SASATVV-TGGTTET---EGAEGMHTLLEMPTPPTAVVAFN 193 (289)
T ss_dssp H--TTC-CSEEEECCTTSTTHHHHHHHHHHHHHHTTC-GGGEEEE-CCCSSHH---HHHHHHHHHHTSSSCCSEEEESS
T ss_pred H--CCC-CcEEEEeCCCCccHHHHHHHHHHHHHHCCC-CCCccEE-ECCCCHH---HHHHHHHHHHcCCCCCCEEEECC
Confidence 2 354 5688875432 34466554332211 1122222 2334333 34455555555432 3555443
No 57
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=48.66 E-value=1.4e+02 Score=27.03 Aligned_cols=88 Identities=8% Similarity=0.010 Sum_probs=53.8
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeec--CCCCc
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTS--RGGHD 221 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTs--R~~~d 221 (413)
+.+||++...-.-|-...+++++.+.+.+ ++ .++.- ..+. .....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~ 49 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEE-LK-VDLQI-------------------------------LAPPGANDVPK 49 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHH-HT-CEEEE-------------------------------ECCSSSCCHHH
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHH-hC-cEEEE-------------------------------ECCCCcCCHHH
Confidence 46899999887788888888888887753 22 12211 1111 11123
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
..+.++.+...++|++++.+-+.... ....+.+.+.+ |+||.+
T Consensus 50 ~~~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~g--iPvV~~ 92 (297)
T 3rot_A 50 QVQFIESALATYPSGIATTIPSDTAF--SKSLQRANKLN--IPVIAV 92 (297)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCSSTT--HHHHHHHHHHT--CCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCHHHH--HHHHHHHHHCC--CCEEEE
Confidence 45678888889999999988766521 11223334445 556654
No 58
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=48.66 E-value=1.7e+02 Score=27.14 Aligned_cols=29 Identities=3% Similarity=-0.151 Sum_probs=22.8
Q ss_pred CeeEEEEccCCCC-chhHHHHHHHHHHHhH
Q 015095 144 EVRACIVTCGGLC-PGINTVIREIVCGLSY 172 (413)
Q Consensus 144 ~~~iaIvtsGG~a-pGmNavIr~iv~~l~~ 172 (413)
..+||++..+-.. |=...++.++.+.+.+
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~ 32 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARD 32 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHH
Confidence 4589999987766 7788888888877754
No 59
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=47.50 E-value=7.4 Score=38.48 Aligned_cols=64 Identities=22% Similarity=0.332 Sum_probs=46.1
Q ss_pred cHHHHHHHHHHhCC---cEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHH
Q 015095 221 DTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVE 290 (413)
Q Consensus 221 d~~~iv~~l~~~~I---d~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~ 290 (413)
.++++++.+.++++ |.++-+||--.+..|..++-.. .++ +++|.||-|. +.++|-+.|--|+++
T Consensus 79 ~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl---la~tdS~v~~kt~I~ 145 (368)
T 2gru_A 79 TVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVAAGMM-FRG--IALIHVPTTF---LAASDSVLSIKQAVN 145 (368)
T ss_dssp HHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHHHHHB-TTC--CEEEEEECSH---HHHHTTTSSCEEEEE
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHHHHHh-cCC--CCEEEECCch---HhhcCCCcCCeEEEE
Confidence 46788899999995 9999999988888777665421 234 7899999997 455555555555444
No 60
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=47.28 E-value=1.6e+02 Score=26.42 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=53.8
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcHH
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~ 223 (413)
+.+||++...-.-|=...++.++-+.+.+ ++ .++. ++.+ .......
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~-------------------------------~~~~-~~~~~~~ 47 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKD-LG-FEVI-------------------------------KIAV-PDGEKTL 47 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHH-HT-EEEE-------------------------------EEEC-CSHHHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHH-cC-CEEE-------------------------------EeCC-CCHHHHH
Confidence 56899999877777788888888777754 22 1221 1111 1112345
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 224 ~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
+.++.+...++|++++.+-+.... ..+.+.+.+.+ +|||.+
T Consensus 48 ~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~~--iPvV~~ 88 (306)
T 8abp_A 48 NAIDSLAASGAKGFVICTPDPKLG--SAIVAKARGYD--MKVIAV 88 (306)
T ss_dssp HHHHHHHHTTCCEEEEECSCGGGH--HHHHHHHHHTT--CEEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCCchhh--HHHHHHHHHCC--CcEEEe
Confidence 677888889999999998776532 22233444445 556654
No 61
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=46.66 E-value=8.3 Score=37.84 Aligned_cols=50 Identities=16% Similarity=0.281 Sum_probs=39.3
Q ss_pred CcHHHHHHHHHHhCC---cEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccc
Q 015095 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (413)
Q Consensus 220 ~d~~~iv~~l~~~~I---d~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTI 272 (413)
...+++++.++++++ |.++-+||--.+..|..++-. +.-.+++|.||-|.
T Consensus 68 ~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A~~---~~rgip~i~IPTTl 120 (348)
T 1ujn_A 68 EVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAAT---YLRGVAYLAFPTTT 120 (348)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECSH
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHH---hccCCCEEEecCcH
Confidence 357889999999998 899999998888887776642 12247899999885
No 62
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=46.61 E-value=76 Score=29.15 Aligned_cols=69 Identities=13% Similarity=0.149 Sum_probs=50.6
Q ss_pred cEEEEEcccchhccC---------CCeeeCChhhHhhhhhcCCceeeecCC--CCcHHHHHHHHHHhCCcEEEEEcCCcc
Q 015095 177 DEILGIEGGYRGFYS---------KNTLTLSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGT 245 (413)
Q Consensus 177 ~~V~Gi~~G~~GL~~---------~~~~~Lt~~~V~~i~~~GGs~LGTsR~--~~d~~~iv~~l~~~~Id~LivIGGdgS 245 (413)
..++|+-.|..=|++ +++-.++++..+.+...|-.++-.... .-|++++++.+.+++.+-++++|+.|.
T Consensus 26 ~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~i~~~p~eKD~TD~e~Al~~a~~~g~~~I~i~Ga~Gg 105 (222)
T 3lm8_A 26 TLWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRIEKAAPALHVYQAEKDQTDLDLALDWALEKQPDIIQIFGITGG 105 (222)
T ss_dssp EEEEEETHHHHHHHHHTCCCSEEESCSTTSCHHHHHHHHHHCTTCEEECCCSSSCHHHHHHHHHHHHCCSEEEEESCCCS
T ss_pred CEEEEECHHHHHHHHcCCCCcEEEeCcccCCHHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence 467888888776653 445556777666676665455544333 357999999999999999999999996
No 63
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=46.04 E-value=1.6e+02 Score=26.13 Aligned_cols=127 Identities=17% Similarity=0.101 Sum_probs=69.7
Q ss_pred eeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCC-CCcHH
Q 015095 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDTN 223 (413)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~-~~d~~ 223 (413)
.+||++...-.-|-...+++++-+.+.+ ++ .++.-+ ++.. .....
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~--------------------------------~~~~~~~~~~ 61 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSE-QG-YSMLLT--------------------------------STNNNPDNER 61 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHH-TT-CEEEEE--------------------------------ECTTCHHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHH-CC-CEEEEE--------------------------------eCCCChHHHH
Confidence 5899999887788888888888877753 33 222211 1111 12345
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchH-HHHHHHHHHHHcCCCceeeeeeccccCCCcccc-cccCchhHHHHHHHHHHHHHH
Q 015095 224 KIVDNIEDRGINQVYIIGGDGTQK-GAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDTAVEEAQRAINAAHV 301 (413)
Q Consensus 224 ~iv~~l~~~~Id~LivIGGdgS~~-~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD-~S~GFdTAv~~~~~~i~~i~~ 301 (413)
+.++.+...++|++++.+.+.+.. ....+.+.+.+.+ ++||.+ |++.+..+ .++++|-. +....+.+.+..
T Consensus 62 ~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~V~~d~~-~~~~~a~~~L~~ 134 (298)
T 3tb6_A 62 RGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNG--IPFAMI----NASYAELAAPSFTLDDV-KGGMMAAEHLLS 134 (298)
T ss_dssp HHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTT--CCEEEE----SSCCTTCSSCEEEECHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcC--CCEEEE----ecCcCCCCCCEEEeCcH-HHHHHHHHHHHH
Confidence 678888899999999998875321 1122334444455 556644 44443322 24554432 112222222222
Q ss_pred hhhccCCcEEEEEc
Q 015095 302 EVESVENGVGIVKL 315 (413)
Q Consensus 302 ~A~s~~~rv~iVEv 315 (413)
.++ +++.++--
T Consensus 135 --~G~-~~i~~i~~ 145 (298)
T 3tb6_A 135 --LGH-THMMGIFK 145 (298)
T ss_dssp --TTC-CSEEEEEE
T ss_pred --CCC-CcEEEEcC
Confidence 244 56777753
No 64
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=45.64 E-value=55 Score=29.40 Aligned_cols=52 Identities=25% Similarity=0.363 Sum_probs=35.5
Q ss_pred eeecCCCCcHHHHHHHHHHhCCcEEEEEcCCcc-hHHHHHHHHHHHHcCCCceeeeeecc
Q 015095 213 LRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGT-QKGAALIYKEVEKRGLQVAVAGIPKT 271 (413)
Q Consensus 213 LGTsR~~~d~~~iv~~l~~~~Id~LivIGGdgS-~~~a~~L~e~~~~~~~~i~vvgIPkT 271 (413)
.+--|+.+.+.+++++.++.+++.++.+-|-.. +-++ ++- ....||||||-.
T Consensus 41 ~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv--vA~-----~t~~PVIgVP~~ 93 (169)
T 3trh_A 41 LSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGT--IAA-----HTLKPVIGVPMA 93 (169)
T ss_dssp CCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHH--HHH-----TCSSCEEEEECC
T ss_pred EcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHH--HHh-----cCCCCEEEeecC
Confidence 334466677888999999999997777655544 3332 221 356899999954
No 65
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=43.94 E-value=1.5e+02 Score=28.18 Aligned_cols=138 Identities=15% Similarity=0.220 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhCCcEE--EEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCC----cccc----cccCchhHHHH
Q 015095 222 TNKIVDNIEDRGINQV--YIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI----AVID----KSFGFDTAVEE 291 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~L--ivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI----~gtD----~S~GFdTAv~~ 291 (413)
+++..+.+++.+=.+| |+.-||-++.....+.+.+.+.|.++-=+|+|= .|- |.+. ..+-..+-+..
T Consensus 7 i~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPf---SDP~aDGpvIq~a~~rAL~~G~~~~~ 83 (271)
T 3nav_A 7 YQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPF---SDPLADGPTIQGANLRALAAKTTPDI 83 (271)
T ss_dssp HHHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCC---CCGGGCCSHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCC---CCCCCCCHHHHHHHHHHHHcCCCHHH
Confidence 4566677776665555 788999999999999999999999988899995 221 1111 11111111223
Q ss_pred HHHHHHHHHHhhhccCCcEEEEEcCCCCc-----chHHHHH-hhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCc
Q 015095 292 AQRAINAAHVEVESVENGVGIVKLMGRYS-----GFISMYA-TLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGH 365 (413)
Q Consensus 292 ~~~~i~~i~~~A~s~~~rv~iVEvMGR~s-----G~LA~~a-aLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~~ 365 (413)
+-+.+..++..-...+ +. +||=+- |.-.... +..+ |+|.+++|..|+.. .+.+.+..+++|-
T Consensus 84 ~~~~v~~~r~~~~~~P--iv---lm~Y~n~v~~~g~~~f~~~~~~a-GvdGvIipDlp~ee------~~~~~~~~~~~gl 151 (271)
T 3nav_A 84 CFELIAQIRARNPETP--IG---LLMYANLVYARGIDDFYQRCQKA-GVDSVLIADVPTNE------SQPFVAAAEKFGI 151 (271)
T ss_dssp HHHHHHHHHHHCTTSC--EE---EEECHHHHHHTCHHHHHHHHHHH-TCCEEEETTSCGGG------CHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCCC--EE---EEecCcHHHHHhHHHHHHHHHHC-CCCEEEECCCCHHH------HHHHHHHHHHcCC
Confidence 3344555553312222 22 354211 3222222 2234 79999999988742 2334445556664
Q ss_pred E-EEEEeCCC
Q 015095 366 M-VIVVAEGA 374 (413)
Q Consensus 366 ~-vIvvaEGa 374 (413)
. +.+++=-.
T Consensus 152 ~~I~lvap~t 161 (271)
T 3nav_A 152 QPIFIAPPTA 161 (271)
T ss_dssp EEEEEECTTC
T ss_pred eEEEEECCCC
Confidence 3 44555433
No 66
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=43.06 E-value=1.8e+02 Score=25.97 Aligned_cols=122 Identities=11% Similarity=-0.003 Sum_probs=64.8
Q ss_pred CeeEEEEccCCCC--chhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCc
Q 015095 144 EVRACIVTCGGLC--PGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHD 221 (413)
Q Consensus 144 ~~~iaIvtsGG~a--pGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d 221 (413)
..+||++...-.- |=...++.++-+.+.+ ++ .++.-. + +......
T Consensus 8 s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~---------------~----------------~~~~~~~ 54 (288)
T 3gv0_A 8 TNVIALVLSVDEELMGFTSQMVFGITEVLST-TQ-YHLVVT---------------P----------------HIHAKDS 54 (288)
T ss_dssp CCEEEEECBCCCCSSCHHHHHHHHHHHHHTT-SS-CEEEEC---------------C----------------BSSGGGT
T ss_pred CCEEEEEecCCccccHHHHHHHHHHHHHHHH-cC-CEEEEe---------------c----------------CCcchhH
Confidence 4589999865433 7777888888777642 22 222110 0 0001122
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccc-cccCchh--HHHHHHHHHHH
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDT--AVEEAQRAINA 298 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD-~S~GFdT--Av~~~~~~i~~ 298 (413)
..++.+.+...++|++++.+.+..-.. .+.+.+.+ +++|. +|++.+..+ .++++|- +...+++.+
T Consensus 55 ~~~~~~~l~~~~vdgiIi~~~~~~~~~----~~~l~~~~--iPvV~----i~~~~~~~~~~~V~~D~~~~g~~a~~~L-- 122 (288)
T 3gv0_A 55 MVPIRYILETGSADGVIISKIEPNDPR----VRFMTERN--MPFVT----HGRSDMGIEHAFHDFDNEAYAYEAVERL-- 122 (288)
T ss_dssp THHHHHHHHHTCCSEEEEESCCTTCHH----HHHHHHTT--CCEEE----ESCCCSSCCCEEEEECHHHHHHHHHHHH--
T ss_pred HHHHHHHHHcCCccEEEEecCCCCcHH----HHHHhhCC--CCEEE----ECCcCCCCCCcEEEeCcHHHHHHHHHHH--
Confidence 356677788899999999986654332 23344445 55664 444443321 3455553 333333332
Q ss_pred HHHhhhccCCcEEEEE
Q 015095 299 AHVEVESVENGVGIVK 314 (413)
Q Consensus 299 i~~~A~s~~~rv~iVE 314 (413)
.. .++ +++.++-
T Consensus 123 -~~--~G~-~~I~~i~ 134 (288)
T 3gv0_A 123 -AQ--CGR-KRIAVIV 134 (288)
T ss_dssp -HH--TTC-CEEEEEC
T ss_pred -HH--CCC-CeEEEEc
Confidence 21 243 5677774
No 67
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=42.08 E-value=1.4e+02 Score=28.15 Aligned_cols=138 Identities=18% Similarity=0.267 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhCCcEE--EEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCC----cccc----cccCchhHHHH
Q 015095 222 TNKIVDNIEDRGINQV--YIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI----AVID----KSFGFDTAVEE 291 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~L--ivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI----~gtD----~S~GFdTAv~~ 291 (413)
+++..+.+++.+=.+| |+.-||-++....++.+.+.+.|.++-=+|+|= .|- |.+. ..+-..+-++.
T Consensus 5 i~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPf---SDP~aDGp~Iq~a~~~AL~~G~~~~~ 81 (267)
T 3vnd_A 5 YQAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPF---SDPLADGPVIQGANLRSLAAGTTSSD 81 (267)
T ss_dssp HHHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCC---SCCTTCCHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCC---CCCCCCCHHHHHHHHHHHHcCCCHHH
Confidence 3455666666665555 788999999999999999999999988889985 221 1111 11112222334
Q ss_pred HHHHHHHHHHhhhccCCcEEEEEcCCCCc-----chHHHHH-hhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCc
Q 015095 292 AQRAINAAHVEVESVENGVGIVKLMGRYS-----GFISMYA-TLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGH 365 (413)
Q Consensus 292 ~~~~i~~i~~~A~s~~~rv~iVEvMGR~s-----G~LA~~a-aLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~~ 365 (413)
.-+.+..++......+ +. +|+=+- |.-.... +..+ |+|.+++|..|+.. .+.+.+..++.|-
T Consensus 82 ~~~~v~~ir~~~~~~P--iv---lm~Y~npv~~~g~e~f~~~~~~a-Gvdgvii~Dlp~ee------~~~~~~~~~~~gl 149 (267)
T 3vnd_A 82 CFDIITKVRAQHPDMP--IG---LLLYANLVFANGIDEFYTKAQAA-GVDSVLIADVPVEE------SAPFSKAAKAHGI 149 (267)
T ss_dssp HHHHHHHHHHHCTTCC--EE---EEECHHHHHHHCHHHHHHHHHHH-TCCEEEETTSCGGG------CHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCCC--EE---EEecCcHHHHhhHHHHHHHHHHc-CCCEEEeCCCCHhh------HHHHHHHHHHcCC
Confidence 4455555654322333 22 454311 3222222 2234 79999999988732 2344555556664
Q ss_pred -EEEEEeCCC
Q 015095 366 -MVIVVAEGA 374 (413)
Q Consensus 366 -~vIvvaEGa 374 (413)
.+.+++=..
T Consensus 150 ~~i~liaP~t 159 (267)
T 3vnd_A 150 APIFIAPPNA 159 (267)
T ss_dssp EEECEECTTC
T ss_pred eEEEEECCCC
Confidence 444665544
No 68
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=42.08 E-value=32 Score=33.52 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHHhCC---cEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccc
Q 015095 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (413)
Q Consensus 220 ~d~~~iv~~l~~~~I---d~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTI 272 (413)
+..+++++.++++++ |.++-+||--.+..|..++-.. .+ .+++|.||-|.
T Consensus 69 ~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~A~~~-~r--gip~i~IPTTl 121 (343)
T 3clh_A 69 HSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIY-FR--GIDFINIPTTL 121 (343)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECSH
T ss_pred HHHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHHHHHh-cc--CCCEEEeCCch
Confidence 357899999999999 9999999988888777665331 22 47899999985
No 69
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=41.74 E-value=27 Score=33.98 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=40.1
Q ss_pred CcHHHHHHHHHHhCC---cEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccc
Q 015095 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (413)
Q Consensus 220 ~d~~~iv~~l~~~~I---d~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTI 272 (413)
...+++++.++++++ |.++-+||--.+..|..++-.. .-.+++|.||-|.
T Consensus 74 ~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~~---~rgip~i~IPTT~ 126 (354)
T 1xah_A 74 EQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAATL---LRGVHFIQVPTTI 126 (354)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHHHHHB---TTCCEEEEEECST
T ss_pred HHHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHHHHHh---ccCCCEEEECCcc
Confidence 357889999999999 9999999988888887776432 2347899999985
No 70
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=40.31 E-value=1.9e+02 Score=26.74 Aligned_cols=106 Identities=15% Similarity=0.078 Sum_probs=62.4
Q ss_pred chhHHHHHHHHHHHhHhCCCcEEEEEc--ccchhccCCCeeeCChhhHhhhhhcCCceeeec--CCCCcHHHHHHHHHHh
Q 015095 157 PGINTVIREIVCGLSYMYGVDEILGIE--GGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTS--RGGHDTNKIVDNIEDR 232 (413)
Q Consensus 157 pGmNavIr~iv~~l~~~~~~~~V~Gi~--~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTs--R~~~d~~~iv~~l~~~ 232 (413)
|.-....+.+++.+.+.++..+|.-+. +.-.|. .+.....+.+...|+.+.... .+..++...++.+++.
T Consensus 130 ~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~------~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~ 203 (366)
T 3td9_A 130 FIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYSV------GLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMSF 203 (366)
T ss_dssp CCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHHH------HHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHHH------HHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHhc
Confidence 333345566667665444555655552 111111 111112334556677766543 2345788889999999
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeecc
Q 015095 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (413)
Q Consensus 233 ~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkT 271 (413)
+.+++|+.+-+ ..+..+.+.+++.|+++++++...+
T Consensus 204 ~~d~v~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~~ 239 (366)
T 3td9_A 204 NPDAIYITGYY---PEIALISRQARQLGFTGYILAGDGA 239 (366)
T ss_dssp CCSEEEECSCH---HHHHHHHHHHHHTTCCSEEEECGGG
T ss_pred CCCEEEEccch---hHHHHHHHHHHHcCCCceEEeeCCc
Confidence 99999886543 2344566777888999988876544
No 71
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=39.79 E-value=47 Score=29.67 Aligned_cols=89 Identities=17% Similarity=0.295 Sum_probs=52.4
Q ss_pred eeecCCCCcHHHHHHHHHHhCCcEEEEEcCCc-chHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHH
Q 015095 213 LRTSRGGHDTNKIVDNIEDRGINQVYIIGGDG-TQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (413)
Q Consensus 213 LGTsR~~~d~~~iv~~l~~~~Id~LivIGGdg-S~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~ 291 (413)
.+--|+.+.+.+++++.++.+++.++.+-|-. .+-++. +- ....||||||-... ++. |.|
T Consensus 38 ~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~~~-~l~------G~d----- 98 (163)
T 3ors_A 38 VSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMV--AS-----LTTLPVIGVPIETK-SLK------GID----- 98 (163)
T ss_dssp CCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHH--HH-----HCSSCEEEEEECCT-TTT------THH-----
T ss_pred ECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHH--Hh-----ccCCCEEEeeCCCC-CCC------CHH-----
Confidence 33446666778888888888899777665544 344332 22 24688999996543 222 322
Q ss_pred HHHHHHHHHHhhhccCCcE--EEEEcC---CCCcchHHHHH
Q 015095 292 AQRAINAAHVEVESVENGV--GIVKLM---GRYSGFISMYA 327 (413)
Q Consensus 292 ~~~~i~~i~~~A~s~~~rv--~iVEvM---GR~sG~LA~~a 327 (413)
.+..... ++.+| ..|=.- |.++|++|...
T Consensus 99 ------sLlS~vq-mp~GvPVatV~I~~a~~~nAa~lAa~I 132 (163)
T 3ors_A 99 ------SLLSIVQ-MPGGIPVATTAIGAAGAKNAGILAARM 132 (163)
T ss_dssp ------HHHHHHT-CCTTSCCEECCSTHHHHHHHHHHHHHH
T ss_pred ------HHHHHhh-CCCCCceEEEEcCCcccHHHHHHHHHH
Confidence 2333333 34554 666553 67888888654
No 72
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=39.64 E-value=88 Score=28.90 Aligned_cols=106 Identities=14% Similarity=0.127 Sum_probs=60.8
Q ss_pred chhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCe-eeCChhhHhhhhhcCCceeeecC---CCCcHHHHHHHHHHh
Q 015095 157 PGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT-LTLSPKVVNDIHKRGGTILRTSR---GGHDTNKIVDNIEDR 232 (413)
Q Consensus 157 pGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~-~~Lt~~~V~~i~~~GGs~LGTsR---~~~d~~~iv~~l~~~ 232 (413)
|.-+...+.+++.+.+.++..+|.-+... ..+ ..+.....+.+...|+.+..... +..++...++.+++.
T Consensus 119 ~~~~~~~~~~~~~l~~~~g~~~iaii~~~------~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~ 192 (356)
T 3ipc_A 119 GRDDQQGGIAGKYLADHFKDAKVAIIHDK------TPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEA 192 (356)
T ss_dssp CCHHHHHHHHHHHHHHHCTTCCEEEEECS------SHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHhcCCCEEEEEeCC------ChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhc
Confidence 33344556666666554454455544321 100 11111122334556776654433 245788889999999
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeecc
Q 015095 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (413)
Q Consensus 233 ~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkT 271 (413)
+.+++|+.+-+.. +..+.+.+++.|+++++++....
T Consensus 193 ~~d~v~~~~~~~~---a~~~~~~~~~~g~~~~~~~~~~~ 228 (356)
T 3ipc_A 193 GVSIIYWGGLHTE---AGLIIRQAADQGLKAKLVSGDGI 228 (356)
T ss_dssp TCCEEEEESCHHH---HHHHHHHHHHHTCCCEEEECGGG
T ss_pred CCCEEEEccCchH---HHHHHHHHHHCCCCCcEEEeccc
Confidence 9999887664432 34556677778999888876543
No 73
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=39.20 E-value=16 Score=35.60 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=39.9
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCc
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 277 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~ 277 (413)
..+++ +.+++.+.|.++-|||--.++.|..++ +. ++ +++|.||-|.-.|-.
T Consensus 77 ~v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA-~~--~~--~p~i~IPTT~~tgse 127 (354)
T 3ce9_A 77 EIGTN-AFKIPAEVDALIGIGGGKAIDAVKYMA-FL--RK--LPFISVPTSTSNDGF 127 (354)
T ss_dssp HHHHH-HTTSCTTCCEEEEEESHHHHHHHHHHH-HH--HT--CCEEEEESCCSSGGG
T ss_pred HHHHH-HHhhhcCCCEEEEECChHHHHHHHHHH-hh--cC--CCEEEecCcccCCCC
Confidence 45667 777778999999999988898888887 32 24 679999999876543
No 74
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=39.16 E-value=1.8e+02 Score=26.39 Aligned_cols=50 Identities=8% Similarity=0.085 Sum_probs=32.4
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCc---------chHHHHHHHHHHHHcCCCceeeeee
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDG---------TQKGAALIYKEVEKRGLQVAVAGIP 269 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdg---------S~~~a~~L~e~~~~~~~~i~vvgIP 269 (413)
.++++.++.+++.|++++=+..... +...+..+.+.++++|+.+..++.|
T Consensus 30 ~~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~ 88 (295)
T 3cqj_A 30 ECWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVPSMCLS 88 (295)
T ss_dssp SCHHHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEEEEEG
T ss_pred CCHHHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 4677777778888888776655432 2344556666777777776555554
No 75
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=39.02 E-value=1.8e+02 Score=26.80 Aligned_cols=85 Identities=11% Similarity=0.139 Sum_probs=49.5
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC-CcH
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDT 222 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~-~d~ 222 (413)
..+||++...-..|-...++.++-..+.+ ++ .++. +..+... ...
T Consensus 63 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~ 108 (332)
T 2o20_A 63 TTTVGVILPTITSTYFAAITRGVDDIASM-YK-YNMI--------------------------------LANSDNDVEKE 108 (332)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEECCCChHHH
Confidence 45899998765666677777777776643 22 1221 1111111 123
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
.+.++.+...++|++++.+.+.+-.. .+.+.+.+ +|+|.+
T Consensus 109 ~~~~~~l~~~~vdgiI~~~~~~~~~~----~~~l~~~~--iPvV~~ 148 (332)
T 2o20_A 109 EKVLETFLSKQVDGIVYMGSSLDEKI----RTSLKNSR--TPVVLV 148 (332)
T ss_dssp HHHHHHHHHTTCSEEEECSSCCCHHH----HHHHHHHC--CCEEEE
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCHHH----HHHHHhCC--CCEEEE
Confidence 45677888899999999987554322 23333345 456655
No 76
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=38.79 E-value=2.4e+02 Score=26.08 Aligned_cols=141 Identities=17% Similarity=0.206 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhC--CcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeecccc--CCCcccccc----cCchhHHHHHH
Q 015095 222 TNKIVDNIEDRG--INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID--NDIAVIDKS----FGFDTAVEEAQ 293 (413)
Q Consensus 222 ~~~iv~~l~~~~--Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTID--NDI~gtD~S----~GFdTAv~~~~ 293 (413)
+++.++.+++.+ .-.-|+.-|+-+......+++.+.+.|.++--+|+|-+ | -|=|.+..+ +-..+-++...
T Consensus 4 ~~~~f~~~~~~~~~~~i~~i~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~s-dP~adgp~i~~a~~~al~~G~~~~~~~ 82 (262)
T 2ekc_A 4 ISDKFTELKEKREKALVSYLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFS-DPVADGPTIQVAHEVALKNGIRFEDVL 82 (262)
T ss_dssp HHHHHHHHHHHTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSEEEEECCCS-CCTTSCHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHhcCCceEEEEecCCCCChHHHHHHHHHHHHcCCCEEEECCCCC-CcccccHHHHHHHHHHHHcCCCHHHHH
Confidence 345556665543 33345669999999999999999999999888899863 2 122222110 00001112233
Q ss_pred HHHHHHHHhhhccCCcEEEEEcCCCCcchHH------HHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCcE-
Q 015095 294 RAINAAHVEVESVENGVGIVKLMGRYSGFIS------MYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHM- 366 (413)
Q Consensus 294 ~~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA------~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~~~- 366 (413)
+.+..++...-..+ +.+ ||-..-..+ +..+.++ |+|.+++|-.|+ + . .+.+.+..+++|..
T Consensus 83 ~~v~~ir~~~~~~P--i~~---m~y~n~v~~~g~~~f~~~~~~a-G~dgvii~dl~~--e---e-~~~~~~~~~~~gl~~ 150 (262)
T 2ekc_A 83 ELSETLRKEFPDIP--FLL---MTYYNPIFRIGLEKFCRLSREK-GIDGFIVPDLPP--E---E-AEELKAVMKKYVLSF 150 (262)
T ss_dssp HHHHHHHHHCTTSC--EEE---ECCHHHHHHHCHHHHHHHHHHT-TCCEEECTTCCH--H---H-HHHHHHHHHHTTCEE
T ss_pred HHHHHHHhhcCCCC--EEE---EecCcHHHHhhHHHHHHHHHHc-CCCEEEECCCCH--H---H-HHHHHHHHHHcCCcE
Confidence 44555554411222 433 654432111 1223345 799999997664 2 2 33344556666655
Q ss_pred EEEEeCCCC
Q 015095 367 VIVVAEGAG 375 (413)
Q Consensus 367 vIvvaEGa~ 375 (413)
+.+++....
T Consensus 151 i~l~~p~t~ 159 (262)
T 2ekc_A 151 VPLGAPTST 159 (262)
T ss_dssp CCEECTTCC
T ss_pred EEEeCCCCC
Confidence 445665543
No 77
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=38.11 E-value=1.2e+02 Score=26.92 Aligned_cols=123 Identities=8% Similarity=0.036 Sum_probs=63.8
Q ss_pred CeeEEEEccC--CCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC-C
Q 015095 144 EVRACIVTCG--GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-H 220 (413)
Q Consensus 144 ~~~iaIvtsG--G~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~-~ 220 (413)
..+||++... -..|-...++.++...+.+ .+ .++. +-..... .
T Consensus 19 ~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~ 64 (296)
T 3brq_A 19 TQTLGLVVTNTLYHGIYFSELLFHAARMAEE-KG-RQLL--------------------------------LADGKHSAE 64 (296)
T ss_dssp CCEEEEEECGGGCC--CHHHHHHHHHHHHHH-TT-CEEE--------------------------------EECCTTSHH
T ss_pred CceEEEEeCCcccCCchHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCCHH
Confidence 4589999865 5566677788888776653 22 1211 1111111 1
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHH-cCCCceeeeeeccccCCCcccccccCchh--HHHHHHHHHH
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-RGLQVAVAGIPKTIDNDIAVIDKSFGFDT--AVEEAQRAIN 297 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~-~~~~i~vvgIPkTIDNDI~gtD~S~GFdT--Av~~~~~~i~ 297 (413)
...+.++.+...++|++++.+.+.+-.. + +.+.+ .+ +++|.+-...++. . -.++++|- +...+++.
T Consensus 65 ~~~~~~~~l~~~~vdgii~~~~~~~~~~---~-~~l~~~~~--iPvV~~~~~~~~~--~-~~~V~~d~~~~~~~a~~~-- 133 (296)
T 3brq_A 65 EERQAIQYLLDLRCDAIMIYPRFLSVDE---I-DDIIDAHS--QPIMVLNRRLRKN--S-SHSVWCDHKQTSFNAVAE-- 133 (296)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSSSCHHH---H-HHHHHTCS--SCEEEESCCCSSS--G-GGEECCCHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCChHH---H-HHHHhcCC--CCEEEEccccCCC--C-CCEEEEchHHHHHHHHHH--
Confidence 2345677788899999999987654321 2 33444 44 5566553322221 1 13566553 23333333
Q ss_pred HHHHhhhccCCcEEEEEc
Q 015095 298 AAHVEVESVENGVGIVKL 315 (413)
Q Consensus 298 ~i~~~A~s~~~rv~iVEv 315 (413)
+.. .++ ++|.++--
T Consensus 134 -l~~--~G~-~~I~~i~~ 147 (296)
T 3brq_A 134 -LIN--AGH-QEIAFLTG 147 (296)
T ss_dssp -HHH--TTC-CSEEEECC
T ss_pred -HHH--CCC-ceEEEEcC
Confidence 222 244 56877743
No 78
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=37.97 E-value=2.5e+02 Score=26.08 Aligned_cols=88 Identities=15% Similarity=0.053 Sum_probs=43.5
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHHH--
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN-- 297 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i~-- 297 (413)
.+.++.++.|.+.++|++|++|..- ......+ ++++ -++++|.|=..+++ .+. -.++.||.. .+.....
T Consensus 49 ~~~~~~l~~l~~~~~dgIi~~~~~~-~~~~~~~---a~~~-p~~p~v~id~~~~~-~~~-~~~v~~d~~--~~~~lag~~ 119 (318)
T 2fqx_A 49 AEYVPSLSAFADENMGLVVACGSFL-VEAVIET---SARF-PKQKFLVIDAVVQD-RDN-VVSAVFGQN--EGSFLVGVA 119 (318)
T ss_dssp GGHHHHHHHHHHTTCSEEEEESTTT-HHHHHHH---HHHC-TTSCEEEESSCCCS-CTT-EEEEEECHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECChhH-HHHHHHH---HHHC-CCCEEEEEcCccCC-CCC-EEEEEechH--HHHHHHHHH
Confidence 3456778888899999999987432 2222223 2232 13566655322220 011 125556532 2222211
Q ss_pred HHHHhhhccCCcEEEEEcC
Q 015095 298 AAHVEVESVENGVGIVKLM 316 (413)
Q Consensus 298 ~i~~~A~s~~~rv~iVEvM 316 (413)
..+.....++++|++|--+
T Consensus 120 a~~l~~~Gh~r~Ig~i~g~ 138 (318)
T 2fqx_A 120 AALKAKEAGKSAVGFIVGM 138 (318)
T ss_dssp HHHHHHHTTCCEEEEEESC
T ss_pred HHHHhccCCCcEEEEEeCc
Confidence 1233334443579888544
No 79
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=37.12 E-value=58 Score=24.35 Aligned_cols=50 Identities=14% Similarity=0.277 Sum_probs=39.0
Q ss_pred eeecCCCCcHHHHHHHHHHhCCc---------EEEEEcCCcchHHHHHHHHHHHHcCCC
Q 015095 213 LRTSRGGHDTNKIVDNIEDRGIN---------QVYIIGGDGTQKGAALIYKEVEKRGLQ 262 (413)
Q Consensus 213 LGTsR~~~d~~~iv~~l~~~~Id---------~LivIGGdgS~~~a~~L~e~~~~~~~~ 262 (413)
+|+-+...+-++..+.|+..++. +-+.+|.+.+...|..+.+.+++.|++
T Consensus 14 vGaf~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~~ 72 (79)
T 1x60_A 14 IGAFKVKANADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFD 72 (79)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSC
T ss_pred EEEcCCHHHHHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcCCc
Confidence 45555556678888889888877 346778888889999999988887875
No 80
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=37.04 E-value=1.1e+02 Score=27.72 Aligned_cols=134 Identities=13% Similarity=0.162 Sum_probs=71.6
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC-CcH
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDT 222 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~-~d~ 222 (413)
..+||++...-.-|-...++.++.+.+.+ ++ .++. +-.+... ...
T Consensus 16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 61 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYSELARGIEDIATM-YK-YNII--------------------------------LSNSDQNMEKE 61 (289)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCCCCHHHH
Confidence 45899998765667777788888776653 22 1221 1111111 223
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCch--hHHHHHHHHHHHHH
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFD--TAVEEAQRAINAAH 300 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFd--TAv~~~~~~i~~i~ 300 (413)
.+.++.+...++|++++.+.+.+.. ..+.+.+.+ +++|.+-..++++ . -.++++| .+...+++.+ .
T Consensus 62 ~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~~~~~~~~--~-~~~V~~D~~~~g~~a~~~L---~ 129 (289)
T 2fep_A 62 LHLLNTMLGKQVDGIVFMGGNITDE----HVAEFKRSP--VPIVLAASVEEQE--E-TPSVAIDYEQAIYDAVKLL---V 129 (289)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCCHH----HHHHHHHSS--SCEEEESCCCTTC--C-SCEEECCHHHHHHHHHHHH---H
T ss_pred HHHHHHHHhCCCCEEEEecCCCCHH----HHHHHHhcC--CCEEEEccccCCC--C-CCEEEECcHHHHHHHHHHH---H
Confidence 4677888889999999998765422 223334445 5566653332221 1 1245554 2333344333 2
Q ss_pred HhhhccCCcEEEEEcCC--------CCcchHHHH
Q 015095 301 VEVESVENGVGIVKLMG--------RYSGFISMY 326 (413)
Q Consensus 301 ~~A~s~~~rv~iVEvMG--------R~sG~LA~~ 326 (413)
. .++ ++|.++--.. |..||....
T Consensus 130 ~--~G~-~~I~~i~~~~~~~~~~~~R~~Gf~~al 160 (289)
T 2fep_A 130 D--KGH-TDIAFVSGPMAEPINRSKKLQGYKRAL 160 (289)
T ss_dssp H--TTC-SSEEEEESCTTSHHHHTTHHHHHHHHH
T ss_pred H--CCC-CeEEEEeCCccccccHHHHHHHHHHHH
Confidence 2 244 5687775432 445666543
No 81
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=37.03 E-value=2.3e+02 Score=26.47 Aligned_cols=124 Identities=10% Similarity=0.152 Sum_probs=63.4
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC-CcH
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDT 222 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~-~d~ 222 (413)
..+||++...-.-|-...++.++-..+.+ .+ .++. +..+... ...
T Consensus 66 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 111 (348)
T 3bil_A 66 SNTIGVIVPSLINHYFAAMVTEIQSTASK-AG-LATI--------------------------------ITNSNEDATTM 111 (348)
T ss_dssp --CEEEEESCSSSHHHHHHHHHHHHHHHH-TT-CCEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCCCCHHHH
Confidence 34799998665566666777777766643 22 1111 1111111 123
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchh--HHHHHHHHHHHHH
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT--AVEEAQRAINAAH 300 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdT--Av~~~~~~i~~i~ 300 (413)
.+.++.|...++|++++.+.+..-. ..+.+.+.+ +++|.+=..++++. .-.++++|- +...+++.+-.
T Consensus 112 ~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~~~~--iPvV~i~~~~~~~~--~~~~V~~D~~~~~~~a~~~L~~-- 181 (348)
T 3bil_A 112 SGSLEFLTSHGVDGIICVPNEECAN----QLEDLQKQG--MPVVLVDRELPGDS--TIPTATSNPQPGIAAAVELLAH-- 181 (348)
T ss_dssp HHHHHHHHHTTCSCEEECCCGGGHH----HHHHHHHC---CCEEEESSCCSCC---CCCEEEEECHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhCCCCEEEEeCCCCChH----HHHHHHhCC--CCEEEEcccCCCCC--CCCEEEeChHHHHHHHHHHHHH--
Confidence 4677888889999999998765421 223444445 55665533332200 112455442 33334333321
Q ss_pred HhhhccCCcEEEEEc
Q 015095 301 VEVESVENGVGIVKL 315 (413)
Q Consensus 301 ~~A~s~~~rv~iVEv 315 (413)
.++ ++|.++--
T Consensus 182 ---~G~-~~I~~i~~ 192 (348)
T 3bil_A 182 ---NNA-LPIGYLSG 192 (348)
T ss_dssp ---TTC-CSEEEECC
T ss_pred ---CCC-CeEEEEeC
Confidence 254 57887743
No 82
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=37.00 E-value=12 Score=36.76 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCC
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI 276 (413)
.++++++.+++ +.|.++-|||--.+..|..++-. ++ +++|.||-|-..|-
T Consensus 83 ~v~~~~~~~~~-~~d~IIavGGGsv~D~aK~iA~~---~~--~p~i~IPTTa~tgS 132 (376)
T 1kq3_A 83 EIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVAYK---LK--KPVVIVPTIASTDA 132 (376)
T ss_dssp HHHHHHTTCCT-TCCEEEEEESHHHHHHHHHHHHH---TT--CCEEEEESSCCCSC
T ss_pred HHHHHHHHHhc-CCCEEEEeCCcHHHHHHHHHHHh---cC--CCEEEecCccccCc
Confidence 46677777777 99999999998889988888732 24 77999999854443
No 83
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=36.85 E-value=2.1e+02 Score=24.94 Aligned_cols=173 Identities=12% Similarity=0.157 Sum_probs=89.2
Q ss_pred eeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcHHH
Q 015095 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (413)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~~ 224 (413)
.+||++...-.-|-...++.++-+.+.+ ++ .++.-+ -+........+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~~~ 49 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARA-RG-YQLLIA-------------------------------SSDDQPDSERQ 49 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHH-TT-CEEEEE-------------------------------ECTTCHHHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCCCCHHHHHH
Confidence 4789998877778888888888777753 32 222111 01111123456
Q ss_pred HHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccc-cccCchh--HHHHHHHHHHHHHH
Q 015095 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDT--AVEEAQRAINAAHV 301 (413)
Q Consensus 225 iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD-~S~GFdT--Av~~~~~~i~~i~~ 301 (413)
.++.+...++|++++.+.+.... ...+.+.+.+ +++|. +|++++..+ .++++|- +...+++ .+..
T Consensus 50 ~~~~l~~~~vdgiIi~~~~~~~~---~~~~~~~~~~--iPvV~----~~~~~~~~~~~~V~~d~~~~~~~a~~---~L~~ 117 (272)
T 3o74_A 50 LQQLFRARRCDALFVASCLPPED---DSYRELQDKG--LPVIA----IDRRLDPAHFCSVISDDRDASRQLAA---SLLS 117 (272)
T ss_dssp HHHHHHHTTCSEEEECCCCCSSC---CHHHHHHHTT--CCEEE----ESSCCCTTTCEEEEECHHHHHHHHHH---HHHT
T ss_pred HHHHHHHcCCCEEEEecCccccH---HHHHHHHHcC--CCEEE----EccCCCccccCEEEEchHHHHHHHHH---HHHH
Confidence 78888899999999998774321 1223344445 45664 355554322 2445442 2333333 2221
Q ss_pred hhhccCCcEEEEEcCC-------CCcchHHHHHhhhcCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCC---cEEEEEe
Q 015095 302 EVESVENGVGIVKLMG-------RYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENG---HMVIVVA 371 (413)
Q Consensus 302 ~A~s~~~rv~iVEvMG-------R~sG~LA~~aaLA~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~---~~vIvva 371 (413)
.++ +++.++--.- |..||.. ++...+.+...+....++.+ .-.+.+++.++++. .++++.+
T Consensus 118 --~G~-~~i~~i~~~~~~~~~~~R~~gf~~---~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~ai~~~~ 188 (272)
T 3o74_A 118 --SAP-RSIALIGARPELSVSQARAGGFDE---ALQGYTGEVRRYQGEAFSRE---CGQRLMQQLIDDLGGLPDALVTTS 188 (272)
T ss_dssp --TCC-SEEEEEEECTTSHHHHHHHHHHHH---HTTTCCSEEEEEEESSSSHH---HHHHHHHHHHHHHTSCCSEEEESS
T ss_pred --CCC-cEEEEEecCCCCccHHHHHHHHHH---HHHHcCCChheeecCCCCHH---HHHHHHHHHHhcCCCCCcEEEEeC
Confidence 243 5677774322 2334443 34433444444434444433 34455555555433 3555433
No 84
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=35.95 E-value=68 Score=31.06 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=55.6
Q ss_pred EEEEEcccchhccCCCeeeCChhhHhhhhhc-CCc-ee-eecCC--CCcHHHHHHHHHHhCCcEEEEEcCCcc------h
Q 015095 178 EILGIEGGYRGFYSKNTLTLSPKVVNDIHKR-GGT-IL-RTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGT------Q 246 (413)
Q Consensus 178 ~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~-GGs-~L-GTsR~--~~d~~~iv~~l~~~~Id~LivIGGdgS------~ 246 (413)
..+-+.+|-.|... +-|...+..+.+. |=. +. =|||. ...++..+..++..||+-++++.||-. +
T Consensus 54 ~fvsVT~gagg~~r----~~t~~~a~~i~~~~g~~~v~Hltc~~~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~ 129 (304)
T 3fst_A 54 KFVSVTYGANSGER----DRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPE 129 (304)
T ss_dssp SEEEECCCTTSSCH----HHHHHHHHHHHHHHCCCEEEEEESTTSCHHHHHHHHHHHHHTTCCEEEEECCCCC------C
T ss_pred CEEEEeeCCCCcch----hHHHHHHHHHHHHhCCCeeEEeecCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCC
Confidence 55666666655432 1223334444442 321 11 25554 356788889999999999999999843 4
Q ss_pred HHHHHHHHHHHHc-CCCceeeeee
Q 015095 247 KGAALIYKEVEKR-GLQVAVAGIP 269 (413)
Q Consensus 247 ~~a~~L~e~~~~~-~~~i~vvgIP 269 (413)
..|..|.+.+++. ++.|.|.+-|
T Consensus 130 ~~A~dLv~~ir~~~~f~IgvA~yP 153 (304)
T 3fst_A 130 MYASDLVTLLKEVADFDISVAAYP 153 (304)
T ss_dssp CCHHHHHHHHHHHCCCEEEEEECT
T ss_pred CCHHHHHHHHHHcCCCeEEEEeCC
Confidence 4477787877664 6777777777
No 85
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=35.38 E-value=2.4e+02 Score=24.99 Aligned_cols=122 Identities=7% Similarity=0.069 Sum_probs=65.5
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC-CcH
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDT 222 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~-~d~ 222 (413)
..+||++...-..|-...++.++-..+.+ ++ .++. +..+... ...
T Consensus 7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~ 52 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQ-KG-YTLI--------------------------------LGNAWNNLEKQ 52 (289)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHH-HT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CeEE--------------------------------EEcCCCChHHH
Confidence 35899998766677777788888776653 22 1211 1111111 223
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccc--cccCch--hHHHHHHHHHHH
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID--KSFGFD--TAVEEAQRAINA 298 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD--~S~GFd--TAv~~~~~~i~~ 298 (413)
.+.++.+...++|++++.+.+.+-.. .+.+.+. ..+++|.+- .+.+..+ .++++| .+...+++.+
T Consensus 53 ~~~~~~l~~~~vdgii~~~~~~~~~~----~~~l~~~-~~iPvV~~~----~~~~~~~~~~~V~~d~~~~~~~~~~~L-- 121 (289)
T 1dbq_A 53 RAYLSMMAQKRVDGLLVMCSEYPEPL----LAMLEEY-RHIPMVVMD----WGEAKADFTDAVIDNAFEGGYMAGRYL-- 121 (289)
T ss_dssp HHHHHHHHHTTCSEEEEECSCCCHHH----HHHHHHT-TTSCEEEEE----CSSCCSSSCEEEEECHHHHHHHHHHHH--
T ss_pred HHHHHHHHhCCCCEEEEEeccCCHHH----HHHHHhc-cCCCEEEEc----cCCCccCcCCEEEeCcHHHHHHHHHHH--
Confidence 45678888899999999988764322 2233321 235677653 3333222 255555 3333343333
Q ss_pred HHHhhhccCCcEEEEE
Q 015095 299 AHVEVESVENGVGIVK 314 (413)
Q Consensus 299 i~~~A~s~~~rv~iVE 314 (413)
.. .++ ++|.++-
T Consensus 122 -~~--~G~-~~i~~i~ 133 (289)
T 1dbq_A 122 -IE--RGH-REIGVIP 133 (289)
T ss_dssp -HH--TTC-CSEEEEC
T ss_pred -HH--CCC-CeEEEEe
Confidence 22 244 5687773
No 86
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=35.19 E-value=14 Score=37.68 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCC
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI 276 (413)
.++++++.+++ +.|.++-|||--.++.|..++-. ++ +++|.||-|--.|-
T Consensus 134 ~v~~~~~~~~~-~~D~IIAvGGGSviD~AK~iA~~---~g--iP~I~IPTTAgtgS 183 (450)
T 1ta9_A 134 ELDKLRKQCPD-DTQVIIGVGGGKTMDSAKYIAHS---MN--LPSIICPTTASSDA 183 (450)
T ss_dssp HHHHHHTTSCT-TCCEEEEEESHHHHHHHHHHHHH---TT--CCEEEEESSCSCSC
T ss_pred HHHHHHHHHhh-CCCEEEEeCCcHHHHHHHHHHHh---cC--CCEEEEeCCCccCc
Confidence 45666677777 99999999998889988888732 24 77999999944443
No 87
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=34.66 E-value=58 Score=24.68 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=39.8
Q ss_pred eeecCCCCcHHHHHHHHHHhCCcE---------EEEEcCCcchHHHHHHHHHHHHcCCCce
Q 015095 213 LRTSRGGHDTNKIVDNIEDRGINQ---------VYIIGGDGTQKGAALIYKEVEKRGLQVA 264 (413)
Q Consensus 213 LGTsR~~~d~~~iv~~l~~~~Id~---------LivIGGdgS~~~a~~L~e~~~~~~~~i~ 264 (413)
+|+=+...+-+++.+.|+..++.+ -+.+|.+.+...|..+.+.+++.|++..
T Consensus 14 vGaF~~~~~A~~l~~~L~~~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~~g~~~~ 74 (81)
T 1uta_A 14 CGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNC 74 (81)
T ss_dssp CCEESCHHHHHHHHHHHHHHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHCCSCC
T ss_pred EEEcCCHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHHcCCCcE
Confidence 345455566788889999888873 5778888898999999888888787643
No 88
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protei structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} SCOP: c.119.1.0
Probab=33.90 E-value=30 Score=33.08 Aligned_cols=172 Identities=16% Similarity=0.120 Sum_probs=93.2
Q ss_pred CCeeEEEEc-cCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCC-CC
Q 015095 143 DEVRACIVT-CGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GH 220 (413)
Q Consensus 143 ~~~~iaIvt-sGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~-~~ 220 (413)
..+|++||| |..+-| ....+.++ ..|+-++-=+.|=.-.+-++++++.+-.....++.+--||.- ..
T Consensus 2 ~~Mki~IvtDSt~dl~----------~e~~~~~~-I~vvPl~v~~~~~~y~D~~di~~~efy~~~~~~~~~p~TSqps~~ 70 (285)
T 3lup_A 2 NAMKLALITDTSAYLP----------EAIENHED-VYVLDIPIIIDGKTYIEGQNLTLDQYYDKLAASKELPKTSQPSLA 70 (285)
T ss_dssp -CCCEEEEEETTBCCC----------TTTTTCTT-EEEECCCEESSSSCCCBTTTBCHHHHHHHHHHCSSCCEECCCCHH
T ss_pred CCCCEEEEEECCCCCC----------HHHHHHCC-eEEEEEEEEECCEEEecCCCCCHHHHHHHHHhCCCCceeCCCCHH
Confidence 357899999 655555 11222233 233322221222111123578888888887777776677764 35
Q ss_pred cHHHHHHHHHHhCCcEEEEEc----CCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHHHH
Q 015095 221 DTNKIVDNIEDRGINQVYIIG----GDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAI 296 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIG----GdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i 296 (413)
++.++.+.+.+.+-+.+++|. =.||+.+|...+++.. +.+|.| | |.- -.|.|..=.+..+++.+
T Consensus 71 ~~~~~f~~l~~~g~d~ii~i~iSs~LSGTy~sA~~a~~~~~--~~~I~V--i----DS~----~~s~g~g~~v~~A~~l~ 138 (285)
T 3lup_A 71 ELDDLLCQLEKEGYTHVLGLFIAAGISGFWQNIQFLIEEHP--NLTIAF--P----DTK----ITSAPQGNLVRNALMCS 138 (285)
T ss_dssp HHHHHHHHHHHTTCCEEEECCSCGGGCTHHHHHTTHHHHCT--TSEEEC--C----CCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCchhHHHHHHHHHHHhCC--CCCEEE--E----cCC----chHHHHHHHHHHHHHHH
Confidence 778888888888888888874 4678888876655321 222211 1 211 13555555555555543
Q ss_pred H----------HHHHhhhccCCcEEEEEcC------CCCcchHHHHHhhhcCCccEEE
Q 015095 297 N----------AAHVEVESVENGVGIVKLM------GRYSGFISMYATLASRDVDCCL 338 (413)
Q Consensus 297 ~----------~i~~~A~s~~~rv~iVEvM------GR~sG~LA~~aaLA~~~ad~il 338 (413)
+ .+..-... -+-+|+|+.. ||=+.--|+.+.+-.=.|=+.+
T Consensus 139 ~~G~s~eeI~~~l~~~~~~-~~~~f~v~~L~~L~kGGRis~~~a~ig~lL~IKPIl~~ 195 (285)
T 3lup_A 139 REGMDFDVIVNKIQSQIEK-IEGFIVVNDLNHLVKGGRLSNGSAIIGNLLSIKPVLHF 195 (285)
T ss_dssp TTTCCHHHHHHHHHHHHTT-CEEEEECSCTHHHHHHTCBTTHHHHHHHHTTSCCEEEE
T ss_pred HcCCCHHHHHHHHHHHHhh-cEEEEEECChHHHhhCCCccHHHHHHHHhhCcEEEEEE
Confidence 2 22222222 2347788875 6666555555555442343333
No 89
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=33.88 E-value=13 Score=32.08 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=39.0
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCc
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 277 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~ 277 (413)
+++++++.+++.+.+-++||||-.-++.+..+.+ .+.+--+|..++.|..
T Consensus 81 ~~~~~l~~l~~~~~~~i~viGG~~l~~~~l~lvD-------el~lt~ip~~~~G~~~ 130 (162)
T 1vdr_A 81 SVEEAVDIAASLDAETAYVIGGAAIYALFQPHLD-------RMVLSRVPGEYEGDTY 130 (162)
T ss_dssp SHHHHHHHHHHTTCSCEEEEECHHHHHHHGGGCS-------EEEEEEEEEECCCSEE
T ss_pred CHHHHHHHHHhCCCCcEEEECCHHHHHHHHHhCC-------EEEEEEEccccccCEE
Confidence 6888999999888889999999887777665432 3667788998877753
No 90
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=33.84 E-value=65 Score=29.08 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=34.3
Q ss_pred eeecCCCCcHHHHHHHHHHhCCcEEEEEcCCcc-hHHHHHHHHHHHHcCCCceeeeeecc
Q 015095 213 LRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGT-QKGAALIYKEVEKRGLQVAVAGIPKT 271 (413)
Q Consensus 213 LGTsR~~~d~~~iv~~l~~~~Id~LivIGGdgS-~~~a~~L~e~~~~~~~~i~vvgIPkT 271 (413)
.+--|+.+.+.+++++.++.+++.+|.+-|-.. +-++. +- ....||||||-.
T Consensus 47 ~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~ 99 (174)
T 3kuu_A 47 VSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGML--AA-----KTLVPVLGVPVQ 99 (174)
T ss_dssp CCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHH--HH-----TCSSCEEEEEEC
T ss_pred EcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHH--Hh-----ccCCCEEEeeCC
Confidence 334466667788888888889997776655443 43332 21 356899999964
No 91
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=33.42 E-value=55 Score=28.21 Aligned_cols=49 Identities=27% Similarity=0.488 Sum_probs=34.9
Q ss_pred CcHHHHHHHHHH-hCCcEEEEEcCCcchHHHHHHHHHHHHc-CCCceeeeeecc
Q 015095 220 HDTNKIVDNIED-RGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKT 271 (413)
Q Consensus 220 ~d~~~iv~~l~~-~~Id~LivIGGdgS~~~a~~L~e~~~~~-~~~i~vvgIPkT 271 (413)
-|..-+++.++. ..+|.++++-||+=+.-+ .+.++++ |.++-+++.|+.
T Consensus 94 ~Dv~laiD~~~~a~~~d~~vLvSgD~DF~pl---v~~lr~~~G~~V~v~g~~~~ 144 (165)
T 2qip_A 94 WDVGITLDAIEIAPDVDRVILVSGDGDFSLL---VERIQQRYNKKVTVYGVPRL 144 (165)
T ss_dssp CHHHHHHHHHHHGGGCSEEEEECCCGGGHHH---HHHHHHHHCCEEEEEECGGG
T ss_pred ccHHHHHHHHHhhccCCEEEEEECChhHHHH---HHHHHHHcCcEEEEEeCCCc
Confidence 465555555532 579999999999988764 4555664 988888887753
No 92
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=33.09 E-value=1.5e+02 Score=26.97 Aligned_cols=63 Identities=14% Similarity=0.255 Sum_probs=41.8
Q ss_pred hhhcCCceeeecC---CCCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeec
Q 015095 205 IHKRGGTILRTSR---GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (413)
Q Consensus 205 i~~~GGs~LGTsR---~~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPk 270 (413)
+...|+.+..... +..++..+++.+++.+.+++|+.+-+. .+..+.+.+++.|+++++++...
T Consensus 162 l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~i~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~ 227 (346)
T 1usg_A 162 LKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYP---EMGQMLRQARSVGLKTQFMGPEG 227 (346)
T ss_dssp HHHTTCCEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHH---HHHHHHHHHHHTTCCCEEEECGG
T ss_pred HHHcCCEEEEEeccCCCCcCHHHHHHHHHhcCCCEEEEcCcch---HHHHHHHHHHHcCCCCeEEecCC
Confidence 4455666654322 235677788888888999988876322 24456677778899888877543
No 93
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=32.99 E-value=1.4e+02 Score=25.75 Aligned_cols=87 Identities=14% Similarity=0.143 Sum_probs=46.9
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhh-HhhhhhcCCceeeecCC-C--
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKV-VNDIHKRGGTILRTSRG-G-- 219 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~-V~~i~~~GGs~LGTsR~-~-- 219 (413)
+.|+.+.+.||+.--+-.-+-+.. + ... +.+|+- .| ...+++. ++......-.++|.|-. .
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~--l-~~~-G~eVi~-----lG------~~~p~e~lv~aa~~~~~diV~lS~~~~~~ 82 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARA--L-RDA-GFEVVY-----TG------LRQTPEQVAMAAVQEDVDVIGVSILNGAH 82 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHH--H-HHT-TCEEEC-----CC------SBCCHHHHHHHHHHTTCSEEEEEESSSCH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHH--H-HHC-CCEEEE-----CC------CCCCHHHHHHHHHhcCCCEEEEEeechhh
Confidence 458888889998754443332222 1 122 344431 11 1134443 33344455556665432 2
Q ss_pred -CcHHHHHHHHHHhCC-cEEEEEcCCcc
Q 015095 220 -HDTNKIVDNIEDRGI-NQVYIIGGDGT 245 (413)
Q Consensus 220 -~d~~~iv~~l~~~~I-d~LivIGGdgS 245 (413)
..+.++++.|++.+. +..+++||.-.
T Consensus 83 ~~~~~~~i~~L~~~g~~~i~v~vGG~~~ 110 (161)
T 2yxb_A 83 LHLMKRLMAKLRELGADDIPVVLGGTIP 110 (161)
T ss_dssp HHHHHHHHHHHHHTTCTTSCEEEEECCC
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence 346777788888776 57778887543
No 94
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=32.92 E-value=2.8e+02 Score=25.11 Aligned_cols=101 Identities=18% Similarity=0.130 Sum_probs=60.1
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC-CcH
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDT 222 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~-~d~ 222 (413)
..+||++...-.-|=...++.++-..+.+ ++ .++.- -.+... ...
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~~~~~~ 48 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQE-AG-YKTDL--------------------------------QYADDDIPNQ 48 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHH-TT-CEEEE--------------------------------EECTTCHHHH
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHH-cC-CEEEE--------------------------------eeCCCCHHHH
Confidence 45899999877778888888888877753 32 12211 111111 223
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcc---cccccCch
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV---IDKSFGFD 286 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~g---tD~S~GFd 286 (413)
.+.++.+...++|++++.+-+.... ....+.+.+.+ ++||.+ |++++. .+.++++|
T Consensus 49 ~~~i~~~~~~~vdgiIi~~~~~~~~--~~~~~~~~~~g--iPvV~~----~~~~~~~~~~~~~V~~D 107 (330)
T 3uug_A 49 LSQIENMVTKGVKVLVIASIDGTTL--SDVLKQAGEQG--IKVIAY----DRLIRNSGDVSYYATFD 107 (330)
T ss_dssp HHHHHHHHHHTCSEEEECCSSGGGG--HHHHHHHHHTT--CEEEEE----SSCCCSCTTCCEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEEcCCchhH--HHHHHHHHHCC--CCEEEE----CCCCCCCCceeEEEEeC
Confidence 4677888889999999998775321 12233344445 567755 444433 23466655
No 95
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=32.81 E-value=32 Score=33.28 Aligned_cols=88 Identities=20% Similarity=0.279 Sum_probs=56.0
Q ss_pred EEEEEcccchhccCCCeeeCChhhHhhhhhcCCc-ee-eecCC--CCcHHHHHHHHHHhCCcEEEEEcCCcc--------
Q 015095 178 EILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGT-IL-RTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGT-------- 245 (413)
Q Consensus 178 ~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs-~L-GTsR~--~~d~~~iv~~l~~~~Id~LivIGGdgS-------- 245 (413)
..+-+.+|-.|-. .+-|......++..|=. +. =|||. ...++.++..++..||+.++++.||-.
T Consensus 44 d~vsVT~~~~g~~----r~~t~~~a~~i~~~g~~~i~Hltc~~~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~ 119 (310)
T 3apt_A 44 AFVSITYGAMGST----RERSVAWAQRIQSLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRP 119 (310)
T ss_dssp SEEEECCCSTTCS----HHHHHHHHHHHHHTTCCBCEEEECTTSCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCC
T ss_pred CEEEEecCCCCCc----chhHHHHHHHHHHhCCCeEEEeecCCCCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCC
Confidence 4566666655531 22234444445533321 11 25555 346788889999999999999999932
Q ss_pred ----hHHHHHHHHHHHHc-C--CCceeeeee
Q 015095 246 ----QKGAALIYKEVEKR-G--LQVAVAGIP 269 (413)
Q Consensus 246 ----~~~a~~L~e~~~~~-~--~~i~vvgIP 269 (413)
+..|..|.+.+++. | +.|-+.+-|
T Consensus 120 ~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yP 150 (310)
T 3apt_A 120 HPEGFRYAAELVALIRERYGDRVSVGGAAYP 150 (310)
T ss_dssp CTTSCSSHHHHHHHHHHHHGGGSEEEEEECT
T ss_pred CCCCCCCHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 44688888877776 4 677777777
No 96
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=32.45 E-value=1.8e+02 Score=25.72 Aligned_cols=119 Identities=9% Similarity=-0.012 Sum_probs=60.6
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCC-CCcH
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDT 222 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~-~~d~ 222 (413)
..+||++...-.-|-...++.++...+.+ ++. ++. +..+.. ....
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~-~~~--------------------------------~~~~~~~~~~~ 53 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALA-HGY-QVL--------------------------------IGNSDNDIKKA 53 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHH-TTC-CEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHH-CCC-EEE--------------------------------EEeCCCCHHHH
Confidence 35799998776677777788888777653 221 221 111111 1234
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHH-HHHHcCCCceeeeeeccccCCCcccccccCchh--HHHHHHHHHHHH
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYK-EVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT--AVEEAQRAINAA 299 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e-~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdT--Av~~~~~~i~~i 299 (413)
.++++.+...++|++++.+.+ . ...+ .+.+.+ +++|. +|++.+..+ ++++|- +...+++ .+
T Consensus 54 ~~~~~~l~~~~~dgiIi~~~~---~---~~~~~~l~~~~--iPvV~----~~~~~~~~~-~V~~D~~~~g~~a~~---~L 117 (277)
T 3e61_A 54 QGYLATFVSHNCTGMISTAFN---E---NIIENTLTDHH--IPFVF----IDRINNEHN-GISTNHFKGGQLQAE---VV 117 (277)
T ss_dssp HHHHHHHHHTTCSEEEECGGG---H---HHHHHHHHHC---CCEEE----GGGCC----------HHHHHHHHHH---HH
T ss_pred HHHHHHHHhCCCCEEEEecCC---h---HHHHHHHHcCC--CCEEE----EeccCCCCC-eEEechHHHHHHHHH---HH
Confidence 567888889999999998822 1 1233 444445 45664 455555444 777664 2233333 23
Q ss_pred HHhhhccCCcEEEEEc
Q 015095 300 HVEVESVENGVGIVKL 315 (413)
Q Consensus 300 ~~~A~s~~~rv~iVEv 315 (413)
.. .++ +++.++--
T Consensus 118 ~~--~G~-~~i~~i~~ 130 (277)
T 3e61_A 118 RK--GKG-KNVLIVHE 130 (277)
T ss_dssp HH--TTC-CSEEEEES
T ss_pred HH--CCC-CeEEEEeC
Confidence 22 244 56777753
No 97
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=31.37 E-value=36 Score=33.73 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=39.7
Q ss_pred CcHHHHHHHHHHhC--C---cEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccc
Q 015095 220 HDTNKIVDNIEDRG--I---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (413)
Q Consensus 220 ~d~~~iv~~l~~~~--I---d~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTI 272 (413)
...+++++.+.+.+ + |.++-+||--.+..|..++-.. .++ +++|.||-|.
T Consensus 87 ~~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl 141 (393)
T 1sg6_A 87 QTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTY-MRG--VRYVQVPTTL 141 (393)
T ss_dssp HHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHG-GGC--CEEEEEECSH
T ss_pred HHHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHh-cCC--CCEEEECCch
Confidence 35689999999999 9 9999999988888777665432 345 6799999984
No 98
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=31.35 E-value=17 Score=31.37 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=36.7
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHH--HHHHHHHcCCCceeeeeeccccC
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAAL--IYKEVEKRGLQVAVAGIPKTIDN 274 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~--L~e~~~~~~~~i~vvgIPkTIDN 274 (413)
.+++++++.|++.+++-++|+||-.-+..+.. |.+ .+.+.-+|+.+-+
T Consensus 80 ~~l~~~l~~l~~~~~~~i~v~GG~~l~~~~l~~~lvD-------el~l~~~p~~lG~ 129 (168)
T 1cz3_A 80 GSPADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVD-------ELFVTVEPYVFGK 129 (168)
T ss_dssp SCHHHHHHHHHHTTCSEEEEEECHHHHHHHHHTTCCS-------EEEEEECSEEESS
T ss_pred CCHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCCC-------EEEEEEeceecCC
Confidence 47889999999999999999999876665554 322 3667788887754
No 99
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=31.10 E-value=2.7e+02 Score=24.46 Aligned_cols=168 Identities=11% Similarity=0.003 Sum_probs=84.4
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcHH
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~ 223 (413)
..+||++...-.-|=...++.++.+.+.+ ++ .++.-+ .+. ......
T Consensus 5 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~-~~~~~~ 50 (280)
T 3gyb_A 5 TQLIAVLIDDYSNPWFIDLIQSLSDVLTP-KG-YRLSVI-------------------------------DSL-TSQAGT 50 (280)
T ss_dssp CCEEEEEESCTTSGGGHHHHHHHHHHHGG-GT-CEEEEE-------------------------------CSS-SSCSSS
T ss_pred cCEEEEEeCCCCChHHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCC-CchHHH
Confidence 45899999877778888888888877753 22 222211 111 122334
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCC-ccc-ccccCchh--HHHHHHHHHHHH
Q 015095 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI-AVI-DKSFGFDT--AVEEAQRAINAA 299 (413)
Q Consensus 224 ~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI-~gt-D~S~GFdT--Av~~~~~~i~~i 299 (413)
+.++.|...++|+++ ++.+.... .+.+ ..++||.+ |++. ... ..++++|- +...+++ .+
T Consensus 51 ~~~~~l~~~~vdgiI-~~~~~~~~---~~~~------~~iPvV~~----~~~~~~~~~~~~V~~D~~~~g~~a~~---~L 113 (280)
T 3gyb_A 51 DPITSALSMRPDGII-IAQDIPDF---TVPD------SLPPFVIA----GTRITQASTHDSVANDDFRGAEIATK---HL 113 (280)
T ss_dssp CHHHHHHTTCCSEEE-EESCC-----------------CCCEEEE----SCCCSSSCSTTEEEECHHHHHHHHHH---HH
T ss_pred HHHHHHHhCCCCEEE-ecCCCChh---hHhh------cCCCEEEE----CCCCCCCCCCCEEEechHHHHHHHHH---HH
Confidence 567778889999999 88766532 1211 24566654 4444 111 13455543 2233333 22
Q ss_pred HHhhhccCCcEEEEEcCC-----CCcchHHHHHhhhcCCccEE-EcCCCCCCCCChhhHHHHHHHHHHhCC--cEEEEEe
Q 015095 300 HVEVESVENGVGIVKLMG-----RYSGFISMYATLASRDVDCC-LIPESPFYLEGPGGLFEFIERQLKENG--HMVIVVA 371 (413)
Q Consensus 300 ~~~A~s~~~rv~iVEvMG-----R~sG~LA~~aaLA~~~ad~i-lIPE~pf~l~~~~~~~e~i~~r~~~~~--~~vIvva 371 (413)
.. .++ +++.++-... |..||...... .+.+.. .+....++.+ .-.+.+++.++.+. .++++.+
T Consensus 114 ~~--~G~-~~i~~i~~~~~~~~~R~~gf~~~l~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~ai~~~~ 184 (280)
T 3gyb_A 114 ID--LGH-THIAHLRVGSGAGLRRFESFEATMRA---HGLEPLSNDYLGPAVEH---AGYTETLALLKEHPEVTAIFSSN 184 (280)
T ss_dssp HH--TTC-CSEEEECCSSHHHHHHHHHHHHHHHH---TTCCCEECCCCSCCCHH---HHHHHHHHHHHHCTTCCEEEESS
T ss_pred HH--CCC-CeEEEEeCCCchHHHHHHHHHHHHHH---cCcCCCcccccCCCCHH---HHHHHHHHHHhCCCCCCEEEECC
Confidence 22 244 5677775433 45566654332 233322 1222333332 34455666565542 3554433
No 100
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=30.68 E-value=1.2e+02 Score=28.17 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=44.5
Q ss_pred hhhhcCCceeeecC---CCCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeee
Q 015095 204 DIHKRGGTILRTSR---GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (413)
Q Consensus 204 ~i~~~GGs~LGTsR---~~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIP 269 (413)
.+...|+.+..... +..++...++.+++.+.+++|+.+-+. .+..+.+.+++.|+++++++..
T Consensus 174 ~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dai~~~~~~~---~a~~~~~~~~~~g~~vp~~~~~ 239 (375)
T 4evq_A 174 SFTAGKGEVVKDITIAFPDVEFQSALAEIASLKPDCVYAFFSGG---GALKFIKDYAAANLGIPLWGPG 239 (375)
T ss_dssp HHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEECCTH---HHHHHHHHHHHTTCCCCEEEEG
T ss_pred HHHHcCCeEEEEEecCCCCccHHHHHHHHHhcCCCEEEEecCcc---hHHHHHHHHHHcCCCceEEecC
Confidence 34556776654432 345778889999999999999876553 3455667777889999988864
No 101
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=30.15 E-value=58 Score=29.37 Aligned_cols=54 Identities=15% Similarity=0.257 Sum_probs=36.5
Q ss_pred eeecCCCCcHHHHHHHHHHhCCcEEEEEcCCcc-hHHHHHHHHHHHHcCCCceeeeeecccc
Q 015095 213 LRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGT-QKGAALIYKEVEKRGLQVAVAGIPKTID 273 (413)
Q Consensus 213 LGTsR~~~d~~~iv~~l~~~~Id~LivIGGdgS-~~~a~~L~e~~~~~~~~i~vvgIPkTID 273 (413)
.+--|+...+.+++++.++.+++.++.+-|-.. +-++. +- ....||||||-...
T Consensus 42 ~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~~~ 96 (174)
T 3lp6_A 42 VSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMV--AA-----ATPLPVIGVPVPLG 96 (174)
T ss_dssp CCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHH--HH-----HCSSCEEEEEECCS
T ss_pred ECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHH--Hh-----ccCCCEEEeeCCCC
Confidence 344466777889999999999997777655444 43332 22 24688999996443
No 102
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=29.67 E-value=1.3e+02 Score=27.14 Aligned_cols=177 Identities=15% Similarity=0.083 Sum_probs=86.4
Q ss_pred CeeEEEEccCCCCchhH-HHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCC-CCc
Q 015095 144 EVRACIVTCGGLCPGIN-TVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHD 221 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmN-avIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~-~~d 221 (413)
..+||++...-.-|-.. .++.++.+.+.+ ++ .++.- -.+.. ...
T Consensus 13 s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~~~~~ 58 (301)
T 3miz_A 13 SNTFGIITDYVSTTPYSVDIVRGIQDWANA-NG-KTILI--------------------------------ANTGGSSER 58 (301)
T ss_dssp CCEEEEEESSTTTCCSCHHHHHHHHHHHHH-TT-CEEEE--------------------------------EECTTCHHH
T ss_pred CCEEEEEeCCCcCcccHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCCChHH
Confidence 34788888665556666 778887776653 22 22211 11111 122
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchh--HHHHHHHHHHHH
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT--AVEEAQRAINAA 299 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdT--Av~~~~~~i~~i 299 (413)
..+.++.|...++|++++.+.+... ..+.+.+. .+++|.+=..+++.- ...++++|- +...+++. +
T Consensus 59 ~~~~~~~l~~~~vdGiIi~~~~~~~-----~~~~~~~~--~iPvV~~~~~~~~~~--~~~~V~~D~~~~g~~a~~~---L 126 (301)
T 3miz_A 59 EVEIWKMFQSHRIDGVLYVTMYRRI-----VDPESGDV--SIPTVMINCRPQTRE--LLPSIEPDDYQGARDLTRY---L 126 (301)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEEEEE-----CCCCCTTC--CCCEEEEEEECSSTT--SSCEEEECHHHHHHHHHHH---H
T ss_pred HHHHHHHHHhCCCCEEEEecCCccH-----HHHHHHhC--CCCEEEECCCCCCCC--CCCEEeeChHHHHHHHHHH---H
Confidence 4567888899999999999876543 11222223 456665533333210 112444442 23333332 2
Q ss_pred HHhhhccCCcEEEEEcCC-------CCcchHHHHHhhhcCCccEEEcCCC---CCCCCChhhHHHHHHHHHHhCC--cEE
Q 015095 300 HVEVESVENGVGIVKLMG-------RYSGFISMYATLASRDVDCCLIPES---PFYLEGPGGLFEFIERQLKENG--HMV 367 (413)
Q Consensus 300 ~~~A~s~~~rv~iVEvMG-------R~sG~LA~~aaLA~~~ad~ilIPE~---pf~l~~~~~~~e~i~~r~~~~~--~~v 367 (413)
.. .++ ++|.++--.. |..||........- ..+..++.+. .++.+.-. +.+.+++-++.+. -+|
T Consensus 127 ~~--~G~-~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai 201 (301)
T 3miz_A 127 LE--RGH-RRIGYIRLNPILLGAELRLDAFRRTTSEFGL-TENDLSISLGMDGPVGAENNY-VFAAATEMLKQDDRPTAI 201 (301)
T ss_dssp HT--TTC-CSEEEEECCTTSHHHHHHHHHHHHHHHHHTC-CGGGEEEEECEESSTTSCEEC-HHHHHHHHHTSTTCCSEE
T ss_pred HH--cCC-CeEEEEecCccchhHHHHHHHHHHHHHHcCC-CCCcceEEEcCCCCcCccccH-HHHHHHHHHcCCCCCcEE
Confidence 22 354 5687775322 44566654433211 2232333344 55555211 1244455454432 355
Q ss_pred EEEe
Q 015095 368 IVVA 371 (413)
Q Consensus 368 Ivva 371 (413)
++.+
T Consensus 202 ~~~~ 205 (301)
T 3miz_A 202 MSGN 205 (301)
T ss_dssp EESS
T ss_pred EECC
Confidence 5443
No 103
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=29.24 E-value=2.4e+02 Score=26.52 Aligned_cols=111 Identities=11% Similarity=0.032 Sum_probs=63.5
Q ss_pred chhHHHHHHHHHHHhHhCCCcEEEEEcc-cchhccCCCeeeCChhhHhhhhhcCCceeeecCC---CCcHHHHHHH--HH
Q 015095 157 PGINTVIREIVCGLSYMYGVDEILGIEG-GYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG---GHDTNKIVDN--IE 230 (413)
Q Consensus 157 pGmNavIr~iv~~l~~~~~~~~V~Gi~~-G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~---~~d~~~iv~~--l~ 230 (413)
|--+...+.+++.+.+.++..+|.-+.. ... + -..+.....+.+...|+.+...... ..++...+.. ++
T Consensus 122 ~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~--~---g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~~~l~ 196 (391)
T 3eaf_A 122 PDYSTQACSGLAFLASEFGQGKLALAYDSKVA--Y---SRSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREML 196 (391)
T ss_dssp CCHHHHHHHHHHHHHHHHCSEEEEEEECTTCH--H---HHTTHHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEEecCCh--h---HHHHHHHHHHHHHHcCCceeeeeccCCCCcCHHHHHHHHHHH
Confidence 3345556666666654335445544433 110 0 0111112233445567776655433 3577888888 99
Q ss_pred HhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCC
Q 015095 231 DRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND 275 (413)
Q Consensus 231 ~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDND 275 (413)
+.+.|++|+.+ ++ ..+..+.+.+++.|+++++++..-+.+.+
T Consensus 197 ~~~~dav~~~~-~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 238 (391)
T 3eaf_A 197 AADPDYVWCGN-TI--SSCSLLGRAMAKVGLDAFLLTNVWGFDER 238 (391)
T ss_dssp TTCCSEEEECS-CH--HHHHHHHHHHHHHTCCCEEEECGGGCSTT
T ss_pred HcCCCEEEEec-Cc--HHHHHHHHHHHHCCCCceEEEeccCCCHH
Confidence 99999987754 33 23455667777889999988865544433
No 104
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=29.16 E-value=85 Score=25.18 Aligned_cols=57 Identities=25% Similarity=0.448 Sum_probs=47.0
Q ss_pred hhhcCCceeeecCCCCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCC
Q 015095 205 IHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQ 262 (413)
Q Consensus 205 i~~~GGs~LGTsR~~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~ 262 (413)
-++.+|-.+.|.-..+|+..|++.++.++--.++.+-|. +......+..++++.|..
T Consensus 23 khnypgryirtatssqdirdiiksmkdngkplvvfvnga-sqndvnefqneakkegvs 79 (112)
T 2lnd_A 23 KHNYPGRYIRTATSSQDIRDIIKSMKDNGKPLVVFVNGA-SQNDVNEFQNEAKKEGVS 79 (112)
T ss_dssp HHHSCTTTEEEECSHHHHHHHHHHHTTCCSCEEEEECSC-CHHHHHHHHHHHHHHTCE
T ss_pred hcCCCCceeeeccchhhHHHHHHHHHhcCCeEEEEecCc-ccccHHHHHHHHHhcCcc
Confidence 467788888888777899999999999998888888775 566788888888888864
No 105
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=28.97 E-value=92 Score=25.18 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=34.4
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeec
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPk 270 (413)
+.+.+.+++++++.+++--+..+......+.+.+.+.++ .+..+|.
T Consensus 55 ~~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv--~v~~vP~ 100 (141)
T 3nkl_A 55 KYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHV--EVLTIPN 100 (141)
T ss_dssp GGHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTC--EEEECCC
T ss_pred HHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCC--eEEECCC
Confidence 456666788999999887777666667788888887775 4667774
No 106
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=28.66 E-value=4.3e+02 Score=25.93 Aligned_cols=134 Identities=13% Similarity=0.147 Sum_probs=75.2
Q ss_pred Hhhhhh-cCCceeeecCCCCcHHHHHHHHHHhCCcEEEEEcCCcc---hHHHHHHHHHHHHcCCCceeeeeecccc---C
Q 015095 202 VNDIHK-RGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGT---QKGAALIYKEVEKRGLQVAVAGIPKTID---N 274 (413)
Q Consensus 202 V~~i~~-~GGs~LGTsR~~~d~~~iv~~l~~~~Id~LivIGGdgS---~~~a~~L~e~~~~~~~~i~vvgIPkTID---N 274 (413)
+..... .|-+++++..-+.++.-.....++.....+++.|=|-+ +..+..|.++++++|++...++-.-|.. .
T Consensus 136 l~~~A~~~Gv~i~dvr~~p~~l~v~~g~i~~i~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~li~~ 215 (350)
T 2g0t_A 136 FLKIAHENGTRIIDIRIPPLELDVLRGGIYRKKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGA 215 (350)
T ss_dssp HHHHHHHHTCCEEESSSCCSSCCCCCSGGGGCCSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHHHTTC
T ss_pred HHHHHHHCCCEEEEeCcCCCcccccccceeeecceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceeeeecc
Confidence 334433 46678888544322221112233345667888887654 6778888899999999877766554422 3
Q ss_pred CCcccccccCchhHHHHHHHHHHHHHHhhhccCCcEEEEEcCCC--CcchHHHHHhhhcC-CccEEEc
Q 015095 275 DIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGR--YSGFISMYATLASR-DVDCCLI 339 (413)
Q Consensus 275 DI~gtD~S~GFdTAv~~~~~~i~~i~~~A~s~~~rv~iVEvMGR--~sG~LA~~aaLA~~-~ad~ilI 339 (413)
|....--.+-++-+.-.....+-.+. ..+..+.+||-.|. +..+.....+|..+ .+|.+++
T Consensus 216 ~~gv~~D~~~~~~~ag~~e~~i~~~~----~~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl 279 (350)
T 2g0t_A 216 DAGYVIDAVPADFVSGVVEKAVLKLE----KTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFL 279 (350)
T ss_dssp SEECCGGGSBGGGHHHHHHHHHHHHH----HTTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEE
T ss_pred CCCCCCCceecchhhHHHHhhHHHhh----hcCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEE
Confidence 32221123444444333333333332 22346999999986 44555544444432 6888887
No 107
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=28.34 E-value=44 Score=26.93 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCCceeeeeeccccCCC
Q 015095 248 GAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (413)
Q Consensus 248 ~a~~L~e~~~~~~~~i~vvgIPkTIDNDI 276 (413)
....|.+.+++++...-|||+|++.|+..
T Consensus 39 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~ 67 (98)
T 1iv0_A 39 DVEALLDFVRREGLGKLVVGLPLRTDLKE 67 (98)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCCCSSS
T ss_pred HHHHHHHHHHHcCCCEEEEeeccCCCCCc
Confidence 34556666667777777999999998765
No 108
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=28.31 E-value=2.6e+02 Score=24.79 Aligned_cols=70 Identities=11% Similarity=0.017 Sum_probs=45.0
Q ss_pred CCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecC--CCC
Q 015095 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSR--GGH 220 (413)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR--~~~ 220 (413)
+..+||++...-.-|-...++.++-+.+.+ ++ .++.- +.+.. ...
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~ 50 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEK-QG-VNLRV-------------------------------LEAGGYPNKS 50 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHH-HT-CEEEE-------------------------------EECSSTTCHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHH-cC-CeEEE-------------------------------EcCCCCCCHH
Confidence 346899999877778788888888777754 22 12211 11111 112
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCcc
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDGT 245 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdgS 245 (413)
...+.++.+...++|++++.+.+..
T Consensus 51 ~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 51 RQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp HHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred HHHHHHHHHHHcCCCEEEEeCCChh
Confidence 3456778888899999999987655
No 109
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=28.30 E-value=1.2e+02 Score=27.58 Aligned_cols=85 Identities=18% Similarity=0.246 Sum_probs=55.4
Q ss_pred EEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccC---------CCeeeCChhhHhhhhhcCCceeeecCC
Q 015095 148 CIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS---------KNTLTLSPKVVNDIHKRGGTILRTSRG 218 (413)
Q Consensus 148 aIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~---------~~~~~Lt~~~V~~i~~~GGs~LGTsR~ 218 (413)
+++.+||+.+-.- ..+ ..++|+-.|..=|++ +++--++++..+.+...|-.++--...
T Consensus 4 ~~I~~gG~~~~~~-----------~~~--~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~i~~~~~e 70 (218)
T 3ihk_A 4 VALFSGGDLTYFT-----------RDF--DYFVGIDKGSSFLLKNQLPLDLAIGDFDSVSAEEFKQIKAKAKKLVMAPAE 70 (218)
T ss_dssp EEEECSSCCSCCC-----------CCC--SEEEEETHHHHHHHHTTCCCSEEEECCTTSCHHHHHHHHTTCSSEEECCSS
T ss_pred EEEEECCCCccCc-----------ccC--CEEEEEcHHHHHHHHcCCCCCEEEeCcccCCHHHHHHHHhcCCeEEECCCC
Confidence 5566788766311 112 468888888877754 344446666666666554334432222
Q ss_pred --CCcHHHHHHHHHHh-CCcEEEEEcCCcc
Q 015095 219 --GHDTNKIVDNIEDR-GINQVYIIGGDGT 245 (413)
Q Consensus 219 --~~d~~~iv~~l~~~-~Id~LivIGGdgS 245 (413)
.-|++++++.+.++ +.+-++++|+.|.
T Consensus 71 KD~TD~e~Al~~a~~~~~~~~I~i~Ga~GG 100 (218)
T 3ihk_A 71 KNDTDTELALKTIFDCFGRVEIIVFGAFGG 100 (218)
T ss_dssp CSSCHHHHHHHHHHHHTSSCEEEEESCSSS
T ss_pred CCCCHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 24789999888876 8999999999997
No 110
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=28.19 E-value=1.1e+02 Score=32.32 Aligned_cols=102 Identities=19% Similarity=0.114 Sum_probs=54.2
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee-eccccCCCcccccccCchhHHHHHHHHHHHHHH
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI-PKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHV 301 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI-PkTIDNDI~gtD~S~GFdTAv~~~~~~i~~i~~ 301 (413)
-+.++.+++.--+.-++.|.--|..+|..|.+. |.+.--||| |.+|.--=..+-.-...-||+-.++++....
T Consensus 310 ~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~a----GAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~-- 383 (556)
T 4af0_A 310 IEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAA----GADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRF-- 383 (556)
T ss_dssp HHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH----TCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGG--
T ss_pred HHHHHHHHhhCCcceEEeccccCHHHHHHHHHc----CCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHHc--
Confidence 444555555544545555556667777766553 555444555 4443221111111234566776665544321
Q ss_pred hhhccCCcEEEEEcCC-CCcchHHHHHhhhcCCccEEEcC
Q 015095 302 EVESVENGVGIVKLMG-RYSGFISMYATLASRDVDCCLIP 340 (413)
Q Consensus 302 ~A~s~~~rv~iVEvMG-R~sG~LA~~aaLA~~~ad~ilIP 340 (413)
++.||===| |++|.+|- |||. |||.+.+-
T Consensus 384 -------~vpvIADGGI~~sGDi~K--Alaa-GAd~VMlG 413 (556)
T 4af0_A 384 -------GIPCIADGGIGNIGHIAK--ALAL-GASAVMMG 413 (556)
T ss_dssp -------TCCEEEESCCCSHHHHHH--HHHT-TCSEEEES
T ss_pred -------CCCEEecCCcCcchHHHH--Hhhc-CCCEEEEc
Confidence 344443222 68999986 4556 78988874
No 111
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=28.08 E-value=3.1e+02 Score=24.18 Aligned_cols=88 Identities=14% Similarity=0.071 Sum_probs=53.8
Q ss_pred CCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCC-CCc
Q 015095 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHD 221 (413)
Q Consensus 143 ~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~-~~d 221 (413)
+..+||++...-.-|=...++.++.+.+.+ ++ .++.-. .+.. ...
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~--------------------------------~~~~~~~~ 52 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKA-NK-YEALVA--------------------------------TSQNSRIS 52 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHH-TT-CEEEEE--------------------------------ECSSCHHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHH-cC-CEEEEE--------------------------------CCCCCHHH
Confidence 345899999877778888888888877754 33 222211 1111 122
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
..+.++.+...++|++++.+.+.... ..+.+.+.+.+ ++||.+
T Consensus 53 ~~~~~~~l~~~~vdgiI~~~~~~~~~--~~~~~~~~~~~--iPvV~~ 95 (293)
T 3l6u_A 53 EREQILEFVHLKVDAIFITTLDDVYI--GSAIEEAKKAG--IPVFAI 95 (293)
T ss_dssp HHHHHHHHHHTTCSEEEEECSCTTTT--HHHHHHHHHTT--CCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEecCChHHH--HHHHHHHHHcC--CCEEEe
Confidence 34677888889999999998776542 12233444445 556665
No 112
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=27.54 E-value=57 Score=32.42 Aligned_cols=49 Identities=22% Similarity=0.351 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHhCC---cEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccc
Q 015095 221 DTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (413)
Q Consensus 221 d~~~iv~~l~~~~I---d~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTI 272 (413)
.++++++.+++.++ |.++-+||--.+..|..++... .++ +++|.||-|.
T Consensus 88 ~v~~~~~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl 139 (368)
T 3qbe_A 88 VVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATW-LRG--VSIVHLPTTL 139 (368)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHG-GGC--CEEEEEECSH
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHh-ccC--CcEEEECCCC
Confidence 46788999999875 9999999988888887776432 235 6799999995
No 113
>1mgp_A Hypothetical protein TM841; two domain structure with mixed alpha/beta structures in BOTH domains, structural genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP: c.119.1.1 PDB: 1vpv_A*
Probab=27.17 E-value=81 Score=30.56 Aligned_cols=108 Identities=17% Similarity=0.176 Sum_probs=59.4
Q ss_pred cccccCCCCeeEEEEc-cCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhc--cCCCeeeCChhhHhhhhhcCCce
Q 015095 136 EKVYFKSDEVRACIVT-CGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGF--YSKNTLTLSPKVVNDIHKRGGTI 212 (413)
Q Consensus 136 ~~~~~~~~~~~iaIvt-sGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL--~~~~~~~Lt~~~V~~i~~~GGs~ 212 (413)
+++|++.. ++++||| |..+-|- ..+ +.++. .|+-+.==+.|= +.+..++++++++-.....+..+
T Consensus 18 ~~~~~~~~-Mki~IvtDSt~dL~~------e~~----~~~~I-~vvPL~v~~~~~~~Y~D~~~di~~~efy~~m~~~~~~ 85 (313)
T 1mgp_A 18 ENLYFQGH-MKVKILVDSTADVPF------SWM----EKYDI-DSIPLYVVWEDGRSEPDEREPEEIMNFYKRIREAGSV 85 (313)
T ss_dssp -------C-CCEEEEEEGGGCCCT------THH----HHTTE-EEECCEEECTTSCEEECCCCHHHHHHHHHHHHHCSSC
T ss_pred hhhhhcCC-CCEEEEEECCCCCCH------HHH----HhCCe-EEEEEEEEECCEEEEeCCCcCCCHHHHHHHHHhCCCC
Confidence 35666544 4899999 6555551 111 23442 332222112221 22221467888777777776655
Q ss_pred eeecCC-CCcHHHHHHHHHHhCCcEEEEEc----CCcchHHHHHHHHH
Q 015095 213 LRTSRG-GHDTNKIVDNIEDRGINQVYIIG----GDGTQKGAALIYKE 255 (413)
Q Consensus 213 LGTsR~-~~d~~~iv~~l~~~~Id~LivIG----GdgS~~~a~~L~e~ 255 (413)
--||.- ..++.++.+.+.+.+-+.+++|. =.||+.+|...++.
T Consensus 86 pkTSqPs~~~~~e~f~~l~~~g~d~Ii~I~iSs~LSGTy~sA~~Aa~~ 133 (313)
T 1mgp_A 86 PKTSQPSVEDFKKRYLKYKEEDYDVVLVLTLSSKLSGTYNSAVLASKE 133 (313)
T ss_dssp CEEECCCHHHHHHHHHHHHHTTCSEEEEEESCTTTCSHHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHHcCCCeEEEEECCccHhHHHHHHHHHHhc
Confidence 567664 34677777777777887777774 46788888877654
No 114
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=26.98 E-value=3.4e+02 Score=24.15 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=50.4
Q ss_pred eeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC-CcHH
Q 015095 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDTN 223 (413)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~-~d~~ 223 (413)
.+||++...-.-|-...++.++.+.+.+ ++..++. +-.+... ....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~--------------------------------~~~~~~~~~~~~ 49 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKA-APDVQLL--------------------------------MNDSQNDQSKQN 49 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHT-CTTEEEE--------------------------------EEECTTCHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHh-cCCeEEE--------------------------------EecCCCCHHHHH
Confidence 4789998766667777788888777653 2210111 1111111 1234
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 224 ~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
+.++.+...++|++++.+.+.+.. ....+.+.+.+ ++||.+
T Consensus 50 ~~~~~~~~~~vdgiii~~~~~~~~--~~~~~~~~~~~--iPvV~~ 90 (309)
T 2fvy_A 50 DQIDVLLAKGVKALAINLVDPAAA--GTVIEKARGQN--VPVVFF 90 (309)
T ss_dssp HHHHHHHHTTCSEEEECCSSGGGH--HHHHHHHHTTT--CCEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCCcchh--HHHHHHHHHCC--CcEEEe
Confidence 567788889999999988776531 12233444444 566655
No 115
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=26.86 E-value=53 Score=29.41 Aligned_cols=53 Identities=15% Similarity=0.273 Sum_probs=34.6
Q ss_pred eeecCCCCcHHHHHHHHHHhCCcEEEEEcCCcc-hHHHHHHHHHHHHcCCCceeeeeeccc
Q 015095 213 LRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGT-QKGAALIYKEVEKRGLQVAVAGIPKTI 272 (413)
Q Consensus 213 LGTsR~~~d~~~iv~~l~~~~Id~LivIGGdgS-~~~a~~L~e~~~~~~~~i~vvgIPkTI 272 (413)
.+--|+.+.+.+.++.+++.+++.++.+-|-.. +-++. +- ....||||||-..
T Consensus 40 ~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~~ 93 (166)
T 3oow_A 40 VSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMV--AA-----KTTLPVLGVPVKS 93 (166)
T ss_dssp CCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHH--HH-----TCSSCEEEEECCC
T ss_pred EcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHH--Hh-----ccCCCEEEeecCc
Confidence 334466666777888888888988777755544 43332 21 3568999999643
No 116
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=26.84 E-value=1e+02 Score=28.50 Aligned_cols=63 Identities=19% Similarity=0.381 Sum_probs=43.6
Q ss_pred hhhhcCCceeeecC---CCCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCC---ceeeeee
Q 015095 204 DIHKRGGTILRTSR---GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQ---VAVAGIP 269 (413)
Q Consensus 204 ~i~~~GGs~LGTsR---~~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~---i~vvgIP 269 (413)
.+...|+.+..... +..++...+..+++.+.+++|+.+.+.. +..+.+.+++.|+. +++++..
T Consensus 162 ~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~---a~~~~~~~~~~g~~~~~v~~~~~~ 230 (368)
T 4eyg_A 162 RFTAGGGEIVEEIKVPLANPDFAPFLQRMKDAKPDAMFVFVPAGQ---GGNFMKQFAERGLDKSGIKVIGPG 230 (368)
T ss_dssp HHHHTTCEEEEEEEECSSSCCCHHHHHHHHHHCCSEEEEECCTTC---HHHHHHHHHHTTGGGTTCEEEEET
T ss_pred HHHHcCCEEEEEEeCCCCCCcHHHHHHHHHhcCCCEEEEeccchH---HHHHHHHHHHcCCCcCCceEEecC
Confidence 34556777665433 3457888899999999999999766552 34455666777877 6777764
No 117
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=25.93 E-value=3.7e+02 Score=24.24 Aligned_cols=82 Identities=20% Similarity=0.113 Sum_probs=42.6
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcc--cccccCchh--HHHHHHHHHHH
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV--IDKSFGFDT--AVEEAQRAINA 298 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~g--tD~S~GFdT--Av~~~~~~i~~ 298 (413)
.+.++.+...++|++++.+.+.... ....+.+.+.+ ++||.+ |++.+. ...++++|- +...+++.
T Consensus 47 ~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~d~~~~g~~a~~~--- 115 (313)
T 2h3h_A 47 LQMLESFIAEGVNGIAIAPSDPTAV--IPTIKKALEMG--IPVVTL----DTDSPDSGRYVYIGTDNYQAGYTAGLI--- 115 (313)
T ss_dssp HHHHHHHHHTTCSEEEECCSSTTTT--HHHHHHHHHTT--CCEEEE----SSCCTTSCCSCEEECCHHHHHHHHHHH---
T ss_pred HHHHHHHHHcCCCEEEEeCCChHHH--HHHHHHHHHCC--CeEEEe----CCCCCCcceeEEECcCHHHHHHHHHHH---
Confidence 4567777889999999988765421 11223334445 566654 444432 123455553 23333332
Q ss_pred HHHhhhccCCcEEEEEcC
Q 015095 299 AHVEVESVENGVGIVKLM 316 (413)
Q Consensus 299 i~~~A~s~~~rv~iVEvM 316 (413)
+......+ ++|.++--.
T Consensus 116 L~~~~~G~-~~I~~i~~~ 132 (313)
T 2h3h_A 116 MKELLGGK-GKVVIGTGS 132 (313)
T ss_dssp HHHHHTSC-SEEEEEESC
T ss_pred HHHHcCCC-CEEEEEECC
Confidence 22222243 568887543
No 118
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=25.67 E-value=1.8e+02 Score=25.68 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=55.6
Q ss_pred CCcHHHHHHHHHHh-C----CcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCccc--ccccCchh-HHH
Q 015095 219 GHDTNKIVDNIEDR-G----INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDT-AVE 290 (413)
Q Consensus 219 ~~d~~~iv~~l~~~-~----Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gt--D~S~GFdT-Av~ 290 (413)
..|+..+.+.+.++ . =|-++|=||-|=+..|....++ .|+.++|+|+-|- ...+... ...+--++ ++.
T Consensus 60 ~DDya~M~Evl~RR~~r~~~PDLilIDGGkgQl~aA~~vl~e---lg~~i~v~glAK~-~e~l~~~~~~i~L~~~s~~l~ 135 (159)
T 2nrr_A 60 PDDYESIRTVVKRRYSKHPLPNLLFVDGGIGQVNAAIEALKE---IGKDCPVVGLAKK-EETVVFENREIHLPHDHPVLR 135 (159)
T ss_dssp -CHHHHHHHHHHHHHTTSCCCSEEEESSCHHHHHHHHHHHHH---TTCCCCEEEEC-----CEEETTEEECCCTTCHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCCCEEEEeCCHHHHHHHHHHHHH---cCCCccEEEEEcC-CcEEEeCCCeeecCCCCHHHH
Confidence 36777787777765 2 4777777999988888877664 4888999999993 1222111 12333333 667
Q ss_pred HHHHHHHHHHHhhhccCC
Q 015095 291 EAQRAINAAHVEVESVEN 308 (413)
Q Consensus 291 ~~~~~i~~i~~~A~s~~~ 308 (413)
.+++.-|.+|.-|.+.++
T Consensus 136 llqriRDEaHRFAIt~HR 153 (159)
T 2nrr_A 136 LLVQIRDETHRFAVSYHR 153 (159)
T ss_dssp HHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888877653
No 119
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=25.26 E-value=1.5e+02 Score=27.53 Aligned_cols=62 Identities=13% Similarity=0.242 Sum_probs=42.5
Q ss_pred hhhcCCceeeecC---CCCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeee
Q 015095 205 IHKRGGTILRTSR---GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (413)
Q Consensus 205 i~~~GGs~LGTsR---~~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIP 269 (413)
+...|+.+..... +..++...+..+++.+.+++|+.+.+ ..+..+.+.+++.|+++++++..
T Consensus 165 ~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~---~~a~~~~~~~~~~g~~~~~i~~~ 229 (364)
T 3lop_A 165 LKAHALAITAMASYPRNTANVGPAVDKLLAADVQAIFLGATA---EPAAQFVRQYRARGGEAQLLGLS 229 (364)
T ss_dssp HHTTTCCCSEEEEECTTSCCCHHHHHHHHHSCCSEEEEESCH---HHHHHHHHHHHHTTCCCEEEECT
T ss_pred HHHcCCcEEEEEEecCCCccHHHHHHHHHhCCCCEEEEecCc---HHHHHHHHHHHHcCCCCeEEEec
Confidence 4455666554322 34577888889999999998886633 23455667778889988877653
No 120
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=24.77 E-value=79 Score=30.20 Aligned_cols=64 Identities=11% Similarity=0.017 Sum_probs=43.8
Q ss_pred hHhhhhhcCCceeeecCCC--CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 201 VVNDIHKRGGTILRTSRGG--HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 201 ~V~~i~~~GGs~LGTsR~~--~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
-.+.|...||++.+..++. .|+...+..+ ..+.|++|+.|. ...+..|...++..+.++++.+-
T Consensus 142 F~~~~~~~Gg~vv~~~~y~~~~d~~~~l~~i-~~~pDaV~~~~~---~~~~~~i~~~~~~~g~~~pl~~~ 207 (325)
T 2h4a_A 142 FNVRWQQLAGTDANIRYYNLPADVTYFVQEN-NSNTTALYAVAS---PTELAEXKGYLTNIVPNLAIYAS 207 (325)
T ss_dssp HHHHHHHHHSSCCEEEEESSTTHHHHHHHHS-TTCCCEEEECCC---HHHHHHHHHHHTTTCTTCEEEEC
T ss_pred HHHHHHHcCCCcceeEecCCHHHHHHHHHhc-CCCCCEEEEeCC---HHHHhhhhhhHhhcCCCCCEEEe
Confidence 3556788899888776543 4555555444 378999999753 34566777777666778887765
No 121
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=24.73 E-value=4.8e+02 Score=26.90 Aligned_cols=143 Identities=17% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCcEEEEEc-------CCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHH
Q 015095 222 TNKIVDNIEDRGINQVYIIG-------GDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQR 294 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIG-------GdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ 294 (413)
.+.|.+.+++++-+.++|++ ||+--.-+..+.++. .++||.+.. +...+..++-||+.|++.+.+
T Consensus 123 ~~aI~~~~~~~~P~~I~V~tTC~~eiIGdDi~~v~~~~~~~~-----~~pVi~v~t---pGf~g~s~~~G~~~a~~al~~ 194 (533)
T 1mio_A 123 KDAIHEAYEMFHPAAIGVYATCPVGLIGDDILAVAATASKEI-----GIPVHAFSC---EGYKGVSQSAGHHIANNTVMT 194 (533)
T ss_dssp HHHHHHHHHHTCCSEEEECCCHHHHHHTCCHHHHHHHHHHHH-----SSCEEECCC---CTTSSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEcCCHHHHhcCCHHHHHHHHHHhh-----CCcEEEEeC---CCCcCcchhHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhccCCcEEEEEcCCCCcchHHHHHhhh---cCCccEEEcCCCCCCCCChhhHHHHHHHHHHhCCcEEE-EE
Q 015095 295 AINAAHVEVESVENGVGIVKLMGRYSGFISMYATLA---SRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVI-VV 370 (413)
Q Consensus 295 ~i~~i~~~A~s~~~rv~iVEvMGR~sG~LA~~aaLA---~~~ad~ilIPE~pf~l~~~~~~~e~i~~r~~~~~~~vI-vv 370 (413)
.+ .... .....+-+|++ |.+. +.+..|++-+++-|..++ +.
T Consensus 195 ~~------------------------------~~~~~~~~~~~~VNIlG~--~~~~---gD~~eikrlL~~~Gi~v~~~~ 239 (533)
T 1mio_A 195 DI------------------------------IGKGNKEQKKYSINVLGE--YNIG---GDAWEMDRVLEKIGYHVNATL 239 (533)
T ss_dssp HT------------------------------TBCCCCCCCTTEEEEEEE--CCBT---SHHHHHHHHHHHHTCEEEEEE
T ss_pred Hh------------------------------cccccCCCCCCeEEEEcC--CCCh---hhHHHHHHHHHHCCCeEEEEe
Q ss_pred eCCCCcccccccCCcccccCCCCCcccc-cHHHHHHHHHHhhhC
Q 015095 371 AEGAGQEFVAQSMPAVDEKDASGNRLLL-DIGLWLTQKIKIQHT 413 (413)
Q Consensus 371 aEGa~~~~~~~~~~~~~~~Da~Gn~~l~-~vg~~L~~~I~~~~~ 413 (413)
..|..-+-+.. --+|.-|+.+. ..+.++++.++++|.
T Consensus 240 ~gg~t~~ei~~------~~~A~~niv~~~~~~~~~A~~Leer~G 277 (533)
T 1mio_A 240 TGDATYEKVQN------ADKADLNLVQCHRSINYIAEMMETKYG 277 (533)
T ss_dssp ETTCCHHHHHB------TTSCSEEEESCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHh------hhcCCEEEEECHHHHHHHHHHHHHHhC
No 122
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=24.69 E-value=1.5e+02 Score=29.40 Aligned_cols=39 Identities=18% Similarity=0.097 Sum_probs=23.2
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhcc
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFY 190 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~ 190 (413)
.+||.|+-+||- -+ ++...+.+..++.+||.. .|-.|..
T Consensus 3 ~mkvlviG~ggr---e~----ala~~l~~s~~v~~v~~~-pgn~g~~ 41 (431)
T 3mjf_A 3 AMNILIIGNGGR---EH----ALGWKAAQSPLADKIYVA-PGNAGTA 41 (431)
T ss_dssp CEEEEEEECSHH---HH----HHHHHHTTCTTEEEEEEE-ECCHHHH
T ss_pred CcEEEEECCCHH---HH----HHHHHHHhCCCCCEEEEE-CCCHHHh
Confidence 479999988852 22 334444444444678877 4555543
No 123
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=24.67 E-value=3.8e+02 Score=24.02 Aligned_cols=86 Identities=12% Similarity=0.101 Sum_probs=50.5
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC-CcH
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDT 222 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~-~d~ 222 (413)
+.+||++......|-...++.++-+.+.+ ++ .++. +..+... ...
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~l~--------------------------------~~~~~~~~~~~ 47 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEK-RG-ITLK--------------------------------IADGQQKQENQ 47 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHH-HT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EeCCCCCHHHH
Confidence 36899999776677777777887776653 22 1211 1111111 223
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcch-HHHHHHHHHHHHcCCCceeeee
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQ-KGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~-~~a~~L~e~~~~~~~~i~vvgI 268 (413)
.+.++.+...++|++++.+.+... .. ..+.+.+.+ ++||.+
T Consensus 48 ~~~i~~l~~~~vdgiIi~~~~~~~~~~---~~~~~~~~~--iPvV~~ 89 (306)
T 2vk2_A 48 IKAVRSFVAQGVDAIFIAPVVATGWEP---VLKEAKDAE--IPVFLL 89 (306)
T ss_dssp HHHHHHHHHHTCSEEEECCSSSSSCHH---HHHHHHHTT--CCEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCChhhHHH---HHHHHHHCC--CCEEEe
Confidence 456788888999999999876542 22 223334445 556654
No 124
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=24.45 E-value=3.1e+02 Score=24.97 Aligned_cols=45 Identities=20% Similarity=0.317 Sum_probs=27.1
Q ss_pred eCChhhHhhhhhcCCceeeecCCCCcHHHHHHHHHHhCCcEEEEEcCCc
Q 015095 196 TLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDG 244 (413)
Q Consensus 196 ~Lt~~~V~~i~~~GGs~LGTsR~~~d~~~iv~~l~~~~Id~LivIGGdg 244 (413)
-+....++.+...||..+=-. ...+.+ +.+.|. ++|+|++-||.+
T Consensus 28 ~~~~~~~~~l~~aG~~pv~lp-~~~~~~-~~~~l~--~~DGlil~GG~~ 72 (254)
T 3fij_A 28 YTQQRYVDAIQKVGGFPIALP-IDDPST-AVQAIS--LVDGLLLTGGQD 72 (254)
T ss_dssp --CHHHHHHHHHHTCEEEEEC-CCCGGG-HHHHHH--TCSEEEECCCSC
T ss_pred hhhHHHHHHHHHCCCEEEEEe-CCCchH-HHHHHh--hCCEEEECCCCC
Confidence 356677888888888643221 122233 433343 699999999955
No 125
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=24.38 E-value=2.7e+02 Score=24.67 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHhCCcEEEEEcC----CcchHHHHHHHHHHHHcCCCceee
Q 015095 221 DTNKIVDNIEDRGINQVYIIGG----DGTQKGAALIYKEVEKRGLQVAVA 266 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGG----dgS~~~a~~L~e~~~~~~~~i~vv 266 (413)
++++.++.+++.|++++=+.+. +-+-.....+.+.++++|+.+..+
T Consensus 31 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~ 80 (257)
T 3lmz_A 31 DLDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAV 80 (257)
T ss_dssp CHHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 3445555555555555444433 112223334444444445443333
No 126
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=24.00 E-value=3.9e+02 Score=26.44 Aligned_cols=43 Identities=9% Similarity=0.203 Sum_probs=23.4
Q ss_pred cCCCCeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhcc
Q 015095 140 FKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFY 190 (413)
Q Consensus 140 ~~~~~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~ 190 (413)
..|..+||.|+-+|| --++..+ .+.+..+..+||.. .|-.|..
T Consensus 17 ~~p~~m~ilvlG~gg---re~ala~----~l~~s~~v~~v~~~-pgn~g~~ 59 (442)
T 3lp8_A 17 QGPGSMNVLVIGSGG---REHSMLH----HIRKSTLLNKLFIA-PGREGMS 59 (442)
T ss_dssp ---CCEEEEEEECSH---HHHHHHH----HHTTCTTEEEEEEE-ECCGGGT
T ss_pred CCCCCCEEEEECCCh---HHHHHHH----HHHhCCCCCEEEEE-CCChHHh
Confidence 356778999998874 2333333 34444455567765 3445554
No 127
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=23.69 E-value=2.3e+02 Score=25.55 Aligned_cols=85 Identities=9% Similarity=0.027 Sum_probs=50.0
Q ss_pred CeeEEEEccC-----CCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCC
Q 015095 144 EVRACIVTCG-----GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG 218 (413)
Q Consensus 144 ~~~iaIvtsG-----G~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~ 218 (413)
..+||++... -.-|-...++.++-+.+.+ ++ .++.- ..+..
T Consensus 22 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~ 67 (305)
T 3huu_A 22 TLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNV-RG-YSTRM--------------------------------TVSEN 67 (305)
T ss_dssp CCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHH-HT-CEEEE--------------------------------CCCSS
T ss_pred CCEEEEEeCCCccccccCcHHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCC
Confidence 3589999876 4456666777777766653 22 12211 01111
Q ss_pred C-CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeee
Q 015095 219 G-HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (413)
Q Consensus 219 ~-~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgI 268 (413)
. ....++++.+...++|++++.+.+.+-. ..+.+.+.+ ++||.+
T Consensus 68 ~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~i 112 (305)
T 3huu_A 68 SGDLYHEVKTMIQSKSVDGFILLYSLKDDP----IEHLLNEFK--VPYLIV 112 (305)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEESSCBTTCH----HHHHHHHTT--CCEEEE
T ss_pred ChHHHHHHHHHHHhCCCCEEEEeCCcCCcH----HHHHHHHcC--CCEEEE
Confidence 1 2235678888899999999998775532 233444445 456654
No 128
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=23.39 E-value=4e+02 Score=24.42 Aligned_cols=122 Identities=8% Similarity=0.089 Sum_probs=65.4
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC-CcH
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDT 222 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~-~d~ 222 (413)
..+||++...-.-|-...++.++-+.+.+ ++ .++. +..+... ...
T Consensus 58 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 103 (340)
T 1qpz_A 58 TKSIGLLATSSEAAYFAEIIEAVEKNCFQ-KG-YTLI--------------------------------LGNAWNNLEKQ 103 (340)
T ss_dssp CSEEEEEESCSCSHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCCCCHHHH
Confidence 34899998665667777788888776653 22 2221 1111111 223
Q ss_pred HHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccc--cccCchh--HHHHHHHHHHH
Q 015095 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID--KSFGFDT--AVEEAQRAINA 298 (413)
Q Consensus 223 ~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD--~S~GFdT--Av~~~~~~i~~ 298 (413)
.+.++.|...++|++++.+.+.+-.. .+.+.+. ..+++|.+ |++.+..+ .++++|- +...+++.+-.
T Consensus 104 ~~~~~~l~~~~vdgiI~~~~~~~~~~----~~~l~~~-~~iPvV~~----~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~ 174 (340)
T 1qpz_A 104 RAYLSMMAQKRVDGLLVMCSEYPEPL----LAMLEEY-RHIPMVVM----DWGEAKADFTDAVIDNAFEGGYMAGRYLIE 174 (340)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCCHHH----HHHHHTT-TTSCEEEE----EESSCCCSSSEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEeCCCCChHH----HHHHHhh-CCCCEEEE----ecccCCCCCCCEEEECHHHHHHHHHHHHHH
Confidence 45678888899999999987754322 2222221 23566655 33333222 2566552 33334333322
Q ss_pred HHHhhhccCCcEEEEE
Q 015095 299 AHVEVESVENGVGIVK 314 (413)
Q Consensus 299 i~~~A~s~~~rv~iVE 314 (413)
.++ ++|.++-
T Consensus 175 -----~G~-~~I~~i~ 184 (340)
T 1qpz_A 175 -----RGH-REIGVIP 184 (340)
T ss_dssp -----HTC-CCEEEEC
T ss_pred -----CCC-CEEEEEe
Confidence 254 5688874
No 129
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=23.21 E-value=2.9e+02 Score=22.89 Aligned_cols=22 Identities=14% Similarity=0.499 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhCC-cEEEEEcCC
Q 015095 222 TNKIVDNIEDRGI-NQVYIIGGD 243 (413)
Q Consensus 222 ~~~iv~~l~~~~I-d~LivIGGd 243 (413)
+.++++.|++.+. +..+++||.
T Consensus 71 ~~~~i~~l~~~g~~~i~v~vGG~ 93 (137)
T 1ccw_A 71 CKGLRQKCDEAGLEGILLYVGGN 93 (137)
T ss_dssp HTTHHHHHHHTTCTTCEEEEEES
T ss_pred HHHHHHHHHhcCCCCCEEEEECC
Confidence 4455556666555 455566664
No 130
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=23.16 E-value=4.3e+02 Score=24.04 Aligned_cols=101 Identities=11% Similarity=0.001 Sum_probs=55.2
Q ss_pred eeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCC-CcHH
Q 015095 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDTN 223 (413)
Q Consensus 145 ~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~-~d~~ 223 (413)
.+||++...-..|=...++.++.+.+.+ .+ .++. +...+... ....
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~-~g-~~~~-------------------------------~~~~~~~d~~~q~ 50 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKA-LG-IDVT-------------------------------YDGPTEPSVSGQV 50 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHH-HT-CEEE-------------------------------ECCCSSCCHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHH-hC-CEEE-------------------------------EECCCCCCHHHHH
Confidence 3788888655566677777777666643 22 1111 01111111 1234
Q ss_pred HHHHHHHHhCCcEEEEEcCCcch-HHHHHHHHHHHHcCCCceeeeeeccccCCCcc--ccccc-Cchh
Q 015095 224 KIVDNIEDRGINQVYIIGGDGTQ-KGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV--IDKSF-GFDT 287 (413)
Q Consensus 224 ~iv~~l~~~~Id~LivIGGdgS~-~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~g--tD~S~-GFdT 287 (413)
+.++.|...++|+|++.+-+.+. .. ..+.+++.+ |+||.+ |.+++. .+..+ ++|-
T Consensus 51 ~~i~~li~~~vdgiii~~~~~~~~~~---~~~~a~~~g--ipvV~~----d~~~~~~~~~~~v~~~D~ 109 (316)
T 1tjy_A 51 QLVNNFVNQGYDAIIVSAVSPDGLCP---ALKRAMQRG--VKILTW----DSDTKPECRSYYINQGTP 109 (316)
T ss_dssp HHHHHHHHTTCSEEEECCSSSSTTHH---HHHHHHHTT--CEEEEE----SSCCCGGGCSEEEESCCH
T ss_pred HHHHHHHHcCCCEEEEeCCCHHHHHH---HHHHHHHCc--CEEEEe----cCCCCCCCceEEEecCCH
Confidence 56788888999999998876642 22 223344445 667765 444432 23445 6663
No 131
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=23.05 E-value=2.2e+02 Score=25.31 Aligned_cols=30 Identities=10% Similarity=0.009 Sum_probs=21.7
Q ss_pred CCeeEEEEcc-CCCCchhHHHHHHHHHHHhH
Q 015095 143 DEVRACIVTC-GGLCPGINTVIREIVCGLSY 172 (413)
Q Consensus 143 ~~~~iaIvts-GG~apGmNavIr~iv~~l~~ 172 (413)
+..+||++.. .-.-|-...++.++-+.+.+
T Consensus 10 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~ 40 (289)
T 3g85_A 10 SKPTIALYWSSDISVNIISRFLRGLQSKLAK 40 (289)
T ss_dssp -CCEEEEEEETTSCGGGHHHHHHHHHHHHHH
T ss_pred CCceEEEEeccccchHHHHHHHHHHHHHHHH
Confidence 3458999986 45667788888888877753
No 132
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=22.32 E-value=2.8e+02 Score=24.90 Aligned_cols=78 Identities=13% Similarity=0.148 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCccc---ccccCch--hHHHHHHHHH
Q 015095 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI---DKSFGFD--TAVEEAQRAI 296 (413)
Q Consensus 222 ~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gt---D~S~GFd--TAv~~~~~~i 296 (413)
..++++.+...++|++++.+.+.+-. +.+.+.+.+ +++|.+ |++++.. -.++++| .+...+++.+
T Consensus 57 ~~~~~~~l~~~~vdGiI~~~~~~~~~----~~~~l~~~~--iPvV~i----~~~~~~~~~~~~~V~~D~~~~~~~a~~~L 126 (295)
T 3hcw_A 57 MDEVYKMIKQRMVDAFILLYSKENDP----IKQMLIDES--MPFIVI----GKPTSDIDHQFTHIDNDNILASENLTRHV 126 (295)
T ss_dssp HHHHHHHHHTTCCSEEEESCCCTTCH----HHHHHHHTT--CCEEEE----SCCCSSGGGGSCEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcCEEEEcCcccChH----HHHHHHhCC--CCEEEE----CCCCccccCCceEEecCcHHHHHHHHHHH
Confidence 35678888899999999998775432 233344445 456644 5555443 2345544 3444444433
Q ss_pred HHHHHhhhccCCcEEEEEc
Q 015095 297 NAAHVEVESVENGVGIVKL 315 (413)
Q Consensus 297 ~~i~~~A~s~~~rv~iVEv 315 (413)
-. .++ +++.++--
T Consensus 127 ~~-----~G~-~~I~~i~~ 139 (295)
T 3hcw_A 127 IE-----QGV-DELIFITE 139 (295)
T ss_dssp HH-----HCC-SEEEEEEE
T ss_pred HH-----cCC-ccEEEEcC
Confidence 22 354 57877753
No 133
>3qyf_A Crispr-associated protein; helix-turn-helix, antiviral protein, viral resistance, nucle binding domain; 1.90A {Sulfolobus solfataricus}
Probab=22.32 E-value=1.9e+02 Score=28.38 Aligned_cols=112 Identities=13% Similarity=0.166 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHhC----CcEEEEEcCC--cchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchhHHHHHHH
Q 015095 221 DTNKIVDNIEDRG----INQVYIIGGD--GTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQR 294 (413)
Q Consensus 221 d~~~iv~~l~~~~----Id~LivIGGd--gS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~ 294 (413)
++..+...+++.. -..++.+--| .+..+|..|.+++.+.|+++.++.|+ |+.. .=.|.-++....+
T Consensus 75 ELNsL~~l~~~~~~~~~d~~v~Ll~SDT~~G~l~AeiLke~l~~~G~~v~~~~V~-----gL~~---~~~F~~GL~nLv~ 146 (324)
T 3qyf_A 75 ELDSLFSTFEKLKHNKSEIYVFLYSTNTSNSQLAGEVIRDYLIEEGIRSELVTVK-----TISS---EENFYEGIVDLFD 146 (324)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCS---HHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhccccCCCcEEEEEecCCHHHHHHHHHHHHHHHHcCCeeEEEEcC-----CCCc---hHHHHHHHHHHHH
Confidence 4455555555431 1234444333 33556777888888888765554443 2221 2235556666655
Q ss_pred HHHHHHHhhhccCCcEEEEEcCCCCc--chHHHHHhhhcCCcc-EEEcCCC
Q 015095 295 AINAAHVEVESVENGVGIVKLMGRYS--GFISMYATLASRDVD-CCLIPES 342 (413)
Q Consensus 295 ~i~~i~~~A~s~~~rv~iVEvMGR~s--G~LA~~aaLA~~~ad-~ilIPE~ 342 (413)
.+...-.........++|-=|=|-.+ +|+++.+.+. +++ ++||-|.
T Consensus 147 ~v~~~i~~~~~~g~~v~~N~TGGfKaei~yl~l~g~l~--Ga~~v~Yi~E~ 195 (324)
T 3qyf_A 147 KVIYRILKFKEQDNEVYINATPGLKPESIFLTLAGLLA--GADLIYYKYQE 195 (324)
T ss_dssp HTHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHHHT--TCCEEEEEETT
T ss_pred HHHHHHHhhccCCceEEEEcCCCcchHHHHHHHHHHHc--CCCeEEEEEcC
Confidence 55443333333233466655555544 6777777776 366 6666554
No 134
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics, PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A {Ruminococcus gnavus}
Probab=22.30 E-value=2.3e+02 Score=26.98 Aligned_cols=128 Identities=13% Similarity=0.080 Sum_probs=70.9
Q ss_pred eeEEEEc-cCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcHH
Q 015095 145 VRACIVT-CGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (413)
Q Consensus 145 ~~iaIvt-sGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~ 223 (413)
++++||| |..+-| ...+ +.++. .++-++-=+.|=.-.+-++++++.+-.....++.+.-||. +...
T Consensus 20 Mki~IvtDSt~dL~------~e~~----~~~~I-~vvPL~v~~~~~~y~D~~di~~~efy~~~~~~~~~p~TSq--ps~~ 86 (298)
T 3jr7_A 20 MSYKVIVDSCGEFT------PEMK----ADGGF-EHVALGIQIEDTQWTDDDSLKQEELLLKIAESTSCAKTSC--PSPE 86 (298)
T ss_dssp CCEEEEEETTSCCC------HHHH----HHSSE-EEECCEEEETTEEEECSTTSCHHHHHHHHHHCSSCCEEEC--CCHH
T ss_pred CCEEEEEECCCCCC------HHHH----HhCCe-EEEEEEEEECCEEEecCCCCCHHHHHHHHHhCCCCceeCC--CCHH
Confidence 5899999 666655 1222 23442 3332221122211112257888888888777776666765 3445
Q ss_pred HHHHHHHHhCCcEEEEEc----CCcchHHHHHHHHHHHH-c-CCCceeeeeeccccCCCcccccccCchhHHHHHHHHH
Q 015095 224 KIVDNIEDRGINQVYIIG----GDGTQKGAALIYKEVEK-R-GLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAI 296 (413)
Q Consensus 224 ~iv~~l~~~~Id~LivIG----GdgS~~~a~~L~e~~~~-~-~~~i~vvgIPkTIDNDI~gtD~S~GFdTAv~~~~~~i 296 (413)
...+.+++ +-+.+++|. =.||+.+|...++.+.+ + +.+|.|| |.- -.|.|..=.+..+++.+
T Consensus 87 ~~~~~f~~-~~~~Ii~i~iSs~LSGTy~sA~~Aa~~~~e~~~~~~I~Vi------DS~----~~s~g~g~lv~~Aa~l~ 154 (298)
T 3jr7_A 87 RYMESYHC-DAERIYVVTLSAELSGSYNSAVLGKNLYEEEYGEKQIHVF------NSR----SASVGETLIALKVQQCE 154 (298)
T ss_dssp HHHHHHCS-SCSEEEEEESCTTTCSHHHHHHHHHHHHHHHHCCCEEEEE------ECS----SCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-cCCeEEEEECCcchhHHHHHHHHHHHHHHhhCCCCeEEEE------CCC----chhHHHHHHHHHHHHHH
Confidence 55566664 567777763 57889998887776543 2 3343332 111 13555555555555543
No 135
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Probab=22.21 E-value=2e+02 Score=27.21 Aligned_cols=61 Identities=20% Similarity=0.261 Sum_probs=43.8
Q ss_pred eeCChhhHhhhhhcCCceeeecCC-CCcHHHHHHHHHHhCCcEEEEEc----CCcchHHHHHHHHHHH
Q 015095 195 LTLSPKVVNDIHKRGGTILRTSRG-GHDTNKIVDNIEDRGINQVYIIG----GDGTQKGAALIYKEVE 257 (413)
Q Consensus 195 ~~Lt~~~V~~i~~~GGs~LGTsR~-~~d~~~iv~~l~~~~Id~LivIG----GdgS~~~a~~L~e~~~ 257 (413)
++++++.+-.....++ .--||.- ..++.++.+.+.+.+ +.+++|. =.||+.+|...++...
T Consensus 43 ~di~~~efy~~~~~~~-~p~TSqps~~~~~~~f~~l~~~g-~~ii~i~iSs~LSGTy~sA~~aa~~~~ 108 (289)
T 1pzx_A 43 ITIEPKQVYDAMRQGH-TVKTAQPSPLAMKELFLPYAKEN-RPCLYIAFSSKLSGTYQTAMAVRSELL 108 (289)
T ss_dssp TTBCHHHHHHHHTTTC-CCEEECCCHHHHHHHHHHHHHTT-CCEEEEECCTTTCSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhCC-CCeeCCCCHHHHHHHHHHHHhCC-CeEEEEECCCchhHHHHHHHHHHHhhH
Confidence 4688888888887777 6567764 346777777776666 5666663 4788999888777654
No 136
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=22.01 E-value=4.2e+02 Score=23.48 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=60.7
Q ss_pred CeeEEEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCCCeeeCChhhHhhhhhcCCceeeecCCCCcHH
Q 015095 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (413)
Q Consensus 144 ~~~iaIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~~~~~Lt~~~V~~i~~~GGs~LGTsR~~~d~~ 223 (413)
..+||++...-..|-...++.++-+.+.+ ++ .++.-.. -+........
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~------------------------------~~~~~~~~~~ 55 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAHK-NG-YNLIIVY------------------------------SGSADPEEQK 55 (290)
T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHHT-TT-CEEEEEC----------------------------------------
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CeEEEEe------------------------------CCCCCHHHHH
Confidence 35899999777777788888888777653 22 2221110 0000011123
Q ss_pred HHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCchh--HHHHHHHHHHHHHH
Q 015095 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT--AVEEAQRAINAAHV 301 (413)
Q Consensus 224 ~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFdT--Av~~~~~~i~~i~~ 301 (413)
+.++.+...++|++++.+.+.+- ...+.+.+. .+++|.+-...+++ -.++++|- +...+++. +..
T Consensus 56 ~~~~~l~~~~vdgiI~~~~~~~~----~~~~~l~~~--~iPvV~~~~~~~~~----~~~V~~D~~~~g~~a~~~---L~~ 122 (290)
T 3clk_A 56 HALLTAIERPVMGILLLSIALTD----DNLQLLQSS--DVPYCFLSMGFDDD----RPFISSDDEDIGYQATNL---LIN 122 (290)
T ss_dssp CHHHHHHSSCCSEEEEESCC--------CHHHHHCC----CEEEESCC--CC----SCEEECCHHHHHHHHHHH---HHT
T ss_pred HHHHHHHhcCCCEEEEecccCCH----HHHHHHHhC--CCCEEEEcCCCCCC----CCEEEeChHHHHHHHHHH---HHH
Confidence 45667778899999999876542 122333333 46677654333332 22455553 33333332 222
Q ss_pred hhhccCCcEEEEE
Q 015095 302 EVESVENGVGIVK 314 (413)
Q Consensus 302 ~A~s~~~rv~iVE 314 (413)
.++ ++|.++-
T Consensus 123 --~G~-~~i~~i~ 132 (290)
T 3clk_A 123 --EGH-RQIGIAG 132 (290)
T ss_dssp --TTC-CSEEEES
T ss_pred --cCC-CEEEEEe
Confidence 243 5687774
No 137
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=21.69 E-value=4.7e+02 Score=23.95 Aligned_cols=19 Identities=11% Similarity=0.316 Sum_probs=13.9
Q ss_pred cHHHHHHHHHHhCCcEEEE
Q 015095 221 DTNKIVDNIEDRGINQVYI 239 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~Liv 239 (413)
..+.+.+.++++++|.++.
T Consensus 60 ~~~~l~~~~~~~~~d~vi~ 78 (331)
T 2pn1_A 60 YIDHLLTLCQDEGVTALLT 78 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHcCCCEEEe
Confidence 3677777778888887665
No 138
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=21.68 E-value=2.8e+02 Score=25.68 Aligned_cols=86 Identities=20% Similarity=0.253 Sum_probs=58.7
Q ss_pred CCcHHHHHHHHHHh-C----CcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccc--cccCch-hHHH
Q 015095 219 GHDTNKIVDNIEDR-G----INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID--KSFGFD-TAVE 290 (413)
Q Consensus 219 ~~d~~~iv~~l~~~-~----Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD--~S~GFd-TAv~ 290 (413)
..|+..|-+.+.++ . =|-++|=||-|=+..|....++ .|+.++|+|+-|- ...+...+ ..+--+ -++.
T Consensus 65 ~DDya~m~Evl~RR~~r~~~PDLiliDGGkgQl~~a~~vl~~---lg~~i~v~glaK~-~e~l~~~~~~~~l~~~s~~l~ 140 (220)
T 2nrt_A 65 PDDYESIRTVVKRRYSKHPLPNLLFVDGGIGQVNAAIEALKE---IGKDCPVVGLAKK-EETVVFENREIHLPHDHPVLR 140 (220)
T ss_dssp CCHHHHHHHHHHHHHTTSCCCSEEEESSSHHHHHHHHHHHHH---TTCCCCEEEECTT-TCCEEETTEEECCCTTCHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCCCEEEEeCCHHHHHHHHHHHHH---cCCCCeEEEEECC-CcEEEeCCCeeecCCCCHHHH
Confidence 36777787777765 2 4777777999988888877664 4888999999993 12332221 233333 3667
Q ss_pred HHHHHHHHHHHhhhccCC
Q 015095 291 EAQRAINAAHVEVESVEN 308 (413)
Q Consensus 291 ~~~~~i~~i~~~A~s~~~ 308 (413)
.+++.-|.+|.-|.+.++
T Consensus 141 llq~iRDEaHRFAIt~hr 158 (220)
T 2nrt_A 141 LLVQIRDETHRFAVSYHR 158 (220)
T ss_dssp HHHHHHHHHHHHHHGGGH
T ss_pred hhhhhcchhhhccccccc
Confidence 788888888887777653
No 139
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=21.57 E-value=55 Score=28.23 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCCCceeeeeeccccCCCcccccccCch-hHHHHHHHHHHHHHHh----hhccCCcEEEEEcCCC----
Q 015095 248 GAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFD-TAVEEAQRAINAAHVE----VESVENGVGIVKLMGR---- 318 (413)
Q Consensus 248 ~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD~S~GFd-TAv~~~~~~i~~i~~~----A~s~~~rv~iVEvMGR---- 318 (413)
.+.++.+.+.++++++ ..|+-+...| .-.+.||=.+ +-.+.+.+.+..+..+ .....+.+.+|.+.|.
T Consensus 39 ~~~~if~~La~~~Inv--d~i~~s~~~~-g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~i~~~~~~a~vsvvG~~m~~ 115 (167)
T 2re1_A 39 VAYQILGAVADANIEV--DMIIQNVGSE-GTTDFSFTVPRGDYKQTLEILSERQDSIGAASIDGDDTVCKVSAVGLGMRS 115 (167)
T ss_dssp HHHHHHHHHHTTTCCC--CCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCSEEEEESSEEEEEEECSSCTT
T ss_pred HHHHHHHHHHHcCCeE--EEEEcCCCCC-CeeEEEEEEechHHHHHHHHHHHHHHHcCCceEEecCCEEEEEEECCCcCC
Confidence 3456677777666554 4444332211 0112222222 1223334444443222 1123346888888886
Q ss_pred CcchHH-HHHhhhcCCccEEEcC
Q 015095 319 YSGFIS-MYATLASRDVDCCLIP 340 (413)
Q Consensus 319 ~sG~LA-~~aaLA~~~ad~ilIP 340 (413)
..|.+| +..+|+..+.++.+++
T Consensus 116 ~~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 116 HVGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp CCCHHHHHHHHHHHTTCCCCEEE
T ss_pred CcCHHHHHHHHHHHCCCcEEEEE
Confidence 578887 5566766566665553
No 140
>3jtw_A Dihydrofolate reductase; YP_805003.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; 1.90A {Pediococcus pentosaceus atcc 25745}
Probab=21.47 E-value=26 Score=30.74 Aligned_cols=46 Identities=17% Similarity=0.335 Sum_probs=34.8
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCC--Cceeeeeeccc
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGL--QVAVAGIPKTI 272 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~--~i~vvgIPkTI 272 (413)
.+++++++.|++.+++-++|+||-..+..+. +.++ ++.+..+|+.+
T Consensus 96 ~~l~~~l~~l~~~~~~~i~v~GG~~l~~~~l-------~~~lvDel~l~~~p~~~ 143 (178)
T 3jtw_A 96 QSPVELVKRIQKEKGKDVWIVGGAKIIDPLV-------QANLIDTYILTTVPIFL 143 (178)
T ss_dssp SCHHHHHHHHHTSSCCEEEEEECHHHHHHHH-------HTTCCSEEEEEEESCCC
T ss_pred CCHHHHHHHHHhCCCCEEEEEChHHHHHHHH-------HCCCceEEEEEEecEEE
Confidence 3789999999999999999999976555433 1222 36778889887
No 141
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=21.47 E-value=4.3e+02 Score=23.44 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=37.1
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcch---HHHHHHHHHHHHcCCCceee
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQ---KGAALIYKEVEKRGLQVAVA 266 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~---~~a~~L~e~~~~~~~~i~vv 266 (413)
.+++++++.+++.|++++=+...+... .....+.+.++++|+.+..+
T Consensus 17 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 66 (290)
T 2qul_A 17 VDFPATAKRIAGLGFDLMEISLGEFHNLSDAKKRELKAVADDLGLTVMCC 66 (290)
T ss_dssp CCHHHHHHHHHHTTCSEEEEESTTGGGSCHHHHHHHHHHHHHHTCEEEEE
T ss_pred ccHHHHHHHHHHhCCCEEEEecCCccccchhhHHHHHHHHHHcCCceEEe
Confidence 468999999999999999887665433 56777888888889886654
No 142
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=21.11 E-value=1.2e+02 Score=29.27 Aligned_cols=31 Identities=16% Similarity=0.368 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCC-CcchHHHHHhhhcCCccEEE
Q 015095 307 ENGVGIVKLMGR-YSGFISMYATLASRDVDCCL 338 (413)
Q Consensus 307 ~~rv~iVEvMGR-~sG~LA~~aaLA~~~ad~il 338 (413)
.++|++|=|||- |.||+++.-.-.. .+|.++
T Consensus 24 g~~IgfVPTMG~LH~GHlsLv~~Ar~-~~d~vV 55 (287)
T 3q12_A 24 GKRIALVPTMGNLHEGHMTLVDEAKT-RADVVV 55 (287)
T ss_dssp TCCEEEEEECSSCCHHHHHHHHHHHT-TSSEEE
T ss_pred CCeEEEEcCCCcccHHHHHHHHHHHH-hCCEEE
Confidence 457999999997 8899998876555 466444
No 143
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A 1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A* 2jk0_A
Probab=21.04 E-value=4.8e+02 Score=25.15 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=36.3
Q ss_pred CcHHHHHHHHHHh----CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccc
Q 015095 220 HDTNKIVDNIEDR----GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280 (413)
Q Consensus 220 ~d~~~iv~~l~~~----~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD 280 (413)
.++.++++.++++ ++|+++|.=|-+||.-...+....-+ .+.|||..=.=.--+-+.+|
T Consensus 68 ~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlTGAmrP~~~~~sD 130 (327)
T 1o7j_A 68 DVVLKLSQRVNELLARDDVDGVVITHGTDTVEESAYFLHLTVK--SDKPVVFVAAMRPATAISAD 130 (327)
T ss_dssp HHHHHHHHHHHHHHTSTTCCEEEEECCSTTHHHHHHHHHHHCC--CCSCEEEECCSSCTTSTTCS
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEecCchhHHHHHHHHHHHhC--CCCCEEEeCCCCCCCCCCCc
Confidence 5666777666664 79999999999999765444444322 45566654333333333333
No 144
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=21.03 E-value=65 Score=28.87 Aligned_cols=49 Identities=22% Similarity=0.225 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHhCCcEEEEEcCCc----chHHHHHHHHHHHHcCCCceeeeee
Q 015095 221 DTNKIVDNIEDRGINQVYIIGGDG----TQKGAALIYKEVEKRGLQVAVAGIP 269 (413)
Q Consensus 221 d~~~iv~~l~~~~Id~LivIGGdg----S~~~a~~L~e~~~~~~~~i~vvgIP 269 (413)
++++.++.+++.|++++=+..... +-..+..+.+.++++|+++..++.|
T Consensus 17 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 69 (281)
T 3u0h_A 17 SLVLYLDLARETGYRYVDVPFHWLEAEAERHGDAAVEAMFQRRGLVLANLGLP 69 (281)
T ss_dssp CHHHHHHHHHHTTCSEECCCHHHHHHHHHHHCHHHHHHHHHTTTCEECCEECC
T ss_pred CHHHHHHHHHHcCCCEEEecHHHHHHHhcccCHHHHHHHHHHcCCceEEeccc
Confidence 455555555555555554433321 1122344444455555554444433
No 145
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A
Probab=21.03 E-value=2.5e+02 Score=28.90 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=13.8
Q ss_pred HHhCCcEEEEEcCCcchHHHHHHHH
Q 015095 230 EDRGINQVYIIGGDGTQKGAALIYK 254 (413)
Q Consensus 230 ~~~~Id~LivIGGdgS~~~a~~L~e 254 (413)
-++.=-.+++-||.||+.-...+..
T Consensus 245 v~~SDAfIaLPGG~GTLEELfE~LT 269 (462)
T 3gh1_A 245 VRMAHGIIIFPGGPGTAEELLYILG 269 (462)
T ss_dssp HHHCSEEEECSCSHHHHHHHHHHHH
T ss_pred HHHCCEEEEcCCCcchHHHHHHHHH
Confidence 3343334445588888876554433
No 146
>2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis}
Probab=20.90 E-value=2.1e+02 Score=25.49 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=32.3
Q ss_pred CchhHHHHHHHHHHHHHHhhhccCCcEEEEEcCCCCc-chHHHHHhh
Q 015095 284 GFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS-GFISMYATL 329 (413)
Q Consensus 284 GFdTAv~~~~~~i~~i~~~A~s~~~rv~iVEvMGR~s-G~LA~~aaL 329 (413)
-|.++++-+.++++.+...+.. .++++ +||-++ |+||+..++
T Consensus 73 ~~p~~~~D~~~al~~l~~~~~~-~~~i~---l~G~SaGG~lA~~~a~ 115 (274)
T 2qru_A 73 KIDHILRTLTETFQLLNEEIIQ-NQSFG---LCGRSAGGYLMLQLTK 115 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTT-TCCEE---EEEETHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcccc-CCcEE---EEEECHHHHHHHHHHH
Confidence 6889999999999988776643 34554 577777 689988887
No 147
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=20.67 E-value=69 Score=29.13 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=35.5
Q ss_pred eeecCCCCcHHHHHHHHHHhCCcEEEEEcC-CcchHHHHHHHHHHHHcCCCceeeeeecccc
Q 015095 213 LRTSRGGHDTNKIVDNIEDRGINQVYIIGG-DGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (413)
Q Consensus 213 LGTsR~~~d~~~iv~~l~~~~Id~LivIGG-dgS~~~a~~L~e~~~~~~~~i~vvgIPkTID 273 (413)
.+--|+...+.+++++.++.+++.+|.+-| .+.+-++. +- ....||||||-...
T Consensus 48 ~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~~~ 102 (183)
T 1o4v_A 48 VSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMV--AS-----ITHLPVIGVPVKTS 102 (183)
T ss_dssp CCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHH--HH-----HCSSCEEEEEECCT
T ss_pred EcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHH--Hh-----ccCCCEEEeeCCCC
Confidence 444566667788888888888997776644 44444433 21 24688999997553
No 148
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=20.43 E-value=1.5e+02 Score=27.14 Aligned_cols=89 Identities=19% Similarity=0.220 Sum_probs=57.2
Q ss_pred EEEccCCCCchhHHHHHHHHHHHhHhCCCcEEEEEcccchhccCC---------CeeeCChhhHhhhhhcCCceeeecCC
Q 015095 148 CIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK---------NTLTLSPKVVNDIHKRGGTILRTSRG 218 (413)
Q Consensus 148 aIvtsGG~apGmNavIr~iv~~l~~~~~~~~V~Gi~~G~~GL~~~---------~~~~Lt~~~V~~i~~~GGs~LGTsR~ 218 (413)
+++.+||+.+-... .+.+ ....++|+-.|..=|++. ++-.++++..+.+...|=.++--...
T Consensus 4 ~~I~~gG~~~~~~~-------~~~~--~~~~~I~aDgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~~~~~~~e 74 (222)
T 3mel_A 4 VLLVAGGNPSDWPT-------IEPA--TYDYFVGIDRGCLHLLEADLPLQLAVGDFDSLSREEYHFVQETTETLIQAPAE 74 (222)
T ss_dssp EEEECSSCGGGCCC-------CCGG--GCSCEEEETTHHHHHHTTTCCCCEEEECCTTSCTTHHHHHHHHCSSEEECCSS
T ss_pred EEEEECCCCccchh-------HHhh--cCCEEEEEcHHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHhcCCcEEECCcc
Confidence 55667888763221 0111 123688999998877653 34445666666666655334321222
Q ss_pred --CCcHHHHHHHHHHhCCc-EEEEEcCCcc
Q 015095 219 --GHDTNKIVDNIEDRGIN-QVYIIGGDGT 245 (413)
Q Consensus 219 --~~d~~~iv~~l~~~~Id-~LivIGGdgS 245 (413)
.-|++++++.+.+++-+ -++++|+.|.
T Consensus 75 KD~TD~e~Al~~~~~~~~~~~I~i~Ga~Gg 104 (222)
T 3mel_A 75 KDDTDTQLALQEALQRFPQAEMTIIGATGG 104 (222)
T ss_dssp CSSCHHHHHHHHHHHHCTTSEEEEECCCSS
T ss_pred CCCCHHHHHHHHHHHhCCCceEEEEccCCC
Confidence 34788999999999887 9999999996
No 149
>2gd9_A Hypothetical protein YYAP; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=20.40 E-value=33 Score=30.00 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=35.5
Q ss_pred CcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCC--CceeeeeeccccC
Q 015095 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGL--QVAVAGIPKTIDN 274 (413)
Q Consensus 220 ~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~--~i~vvgIPkTIDN 274 (413)
.+++++++.|++.+++-++|+||-..+..... .++ ++.+..+|+.+-.
T Consensus 105 ~~l~~~l~~L~~~~~~~i~v~GG~~l~~~~l~-------~glvDel~l~~~P~~lG~ 154 (189)
T 2gd9_A 105 DNILEEVNKLKKNPGKDIWLYGGASLITTFIN-------LGLVDEFRLSIHPVVLGE 154 (189)
T ss_dssp HHHHHHHHHHHHSCCSEEEEEECHHHHHHHHH-------TTCCCEEEEEECSEECSS
T ss_pred CCHHHHHHHHHhCCCCeEEEEChHHHHHHHHH-------CCCceEEEEEEeCEEeCC
Confidence 47889999999999999999999665544332 222 3667788888753
No 150
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=20.31 E-value=2.6e+02 Score=25.36 Aligned_cols=64 Identities=13% Similarity=0.072 Sum_probs=43.5
Q ss_pred hhhhcCCceeeecC---CCCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeec
Q 015095 204 DIHKRGGTILRTSR---GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (413)
Q Consensus 204 ~i~~~GGs~LGTsR---~~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPk 270 (413)
.+...|+.+..... +..++...+..+++.+.+++|+.+-+. .+..+.+.+++.|++++++++..
T Consensus 158 ~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~dav~~~~~~~---~a~~~~~~~~~~g~~~p~i~~~g 224 (362)
T 3snr_A 158 QGEAMGLKIVGEERFARPDTSVAGQALKLVAANPDAILVGASGT---AAALPQTTLRERGYNGLIYQTHG 224 (362)
T ss_dssp HHHHTTCEEEEEEEECTTCSCCHHHHHHHHHHCCSEEEEECCHH---HHHHHHHHHHHTTCCSEEEECGG
T ss_pred HHHHcCCEEEEEeecCCCCCCHHHHHHHHHhcCCCEEEEecCcc---hHHHHHHHHHHcCCCccEEeccC
Confidence 34556766554332 245777888889999999998876332 34556677778899988876654
No 151
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=20.21 E-value=2.3e+02 Score=25.99 Aligned_cols=63 Identities=24% Similarity=0.446 Sum_probs=42.7
Q ss_pred hhhcCCceeeecC---CCCcHHHHHHHHHHhCCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeec
Q 015095 205 IHKRGGTILRTSR---GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (413)
Q Consensus 205 i~~~GGs~LGTsR---~~~d~~~iv~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPk 270 (413)
+...|+.+..... +..++...++.+++.+.+++|+.+ ++ ..+..+.+.+++.|+++++++...
T Consensus 163 l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~d~i~~~~-~~--~~a~~~~~~~~~~g~~~p~~~~~~ 228 (358)
T 3hut_A 163 FELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYLAM-AY--EDAAPFLRALRARGSALPVYGSSA 228 (358)
T ss_dssp HHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEES-CH--HHHHHHHHHHHHTTCCCCEEECGG
T ss_pred HHHcCCEEEEEEecCCCCccHHHHHHHHHhcCCCEEEEcc-Cc--hHHHHHHHHHHHcCCCCcEEecCc
Confidence 4455666554422 245778888889999999888764 33 234456677778899988887653
No 152
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Probab=20.06 E-value=4.7e+02 Score=25.29 Aligned_cols=60 Identities=17% Similarity=0.061 Sum_probs=37.2
Q ss_pred CCcHHHHHHHHHHh----CCcEEEEEcCCcchHHHHHHHHHHHHcCCCceeeeeeccccCCCcccc
Q 015095 219 GHDTNKIVDNIEDR----GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280 (413)
Q Consensus 219 ~~d~~~iv~~l~~~----~Id~LivIGGdgS~~~a~~L~e~~~~~~~~i~vvgIPkTIDNDI~gtD 280 (413)
..++.++++.++++ +.|+++|.=|-+||.-...+....- ..+.|||..=.=.--+-+.+|
T Consensus 67 ~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l--~~~kPVVlTGAmrP~~~~~sD 130 (332)
T 2wlt_A 67 EEIWFKLAQRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVL--HSTKPVVLVGAMRNASSLSAD 130 (332)
T ss_dssp HHHHHHHHHHHHHHHTSTTCCEEEEECCSSSHHHHHHHHHHHC--CCSSCEEEECCSSCTTSTTCS
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEecCchhHHHHHHHHHHHh--CCCCCEEEECCCCCCCCCCcc
Confidence 35666777776664 7999999999999966444444432 245566654333333334444
Done!