RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 015095
(413 letters)
>gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase.
Length = 484
Score = 749 bits (1936), Expect = 0.0
Identities = 284/352 (80%), Positives = 324/352 (92%), Gaps = 2/352 (0%)
Query: 60 RSSNQKVHN--DGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNI 117
SS K+ G+VLEDVPHLT++LPDLP+YPNPL+ + AY+VVKQ FV+ +D VAQ I
Sbjct: 1 GSSKPKIVTGDAGYVLEDVPHLTDYLPDLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKI 60
Query: 118 VIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVD 177
V+ KDSPRG HFRRAGPR+KVYF+SDEVRACIVTCGGLCPG+NTVIREIVCGLSYMYGV
Sbjct: 61 VVHKDSPRGTHFRRAGPRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVT 120
Query: 178 EILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQV 237
ILGI+GGYRGFYS+NT+ L+PKVVNDIHKRGGTIL TSRGGHDT+KIVD+I+DRGINQV
Sbjct: 121 RILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQV 180
Query: 238 YIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297
YIIGGDGTQKGA++IY+E+ +RGL+VAVAGIPKTIDNDI VIDKSFGFDTAVEEAQRAIN
Sbjct: 181 YIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAIN 240
Query: 298 AAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIE 357
AAHVE ESVENG+G+VKLMGRYSGFI+MYATLASRDVDCCLIPESPFYLEG GGLFEFIE
Sbjct: 241 AAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIE 300
Query: 358 RQLKENGHMVIVVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIK 409
++LKENGHMVIVVAEGAGQ+ +A+SM + D +DASGN+LLLD+GLWL+QKIK
Sbjct: 301 KRLKENGHMVIVVAEGAGQDLIAESMESSDLQDASGNKLLLDVGLWLSQKIK 352
>gnl|CDD|235869 PRK06830, PRK06830, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 443
Score = 432 bits (1113), Expect = e-150
Identities = 176/329 (53%), Positives = 220/329 (66%), Gaps = 14/329 (4%)
Query: 90 PNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGV------HFRRAGPREKVYFKSD 143
P+PL S A A FVS D V ++ + F +AGPREK+YF
Sbjct: 21 PSPLIYSLA-AGDTTHFVSDSDRVLFDVSLSLIKEEDAPGTEPPSFEKAGPREKIYFDPS 79
Query: 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGF---YSKNTLTLSPK 200
+V+A IVTCGGLCPG+N VIR IV L + YGV ILGI GY+G Y + + L+P+
Sbjct: 80 KVKAAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPE 139
Query: 201 VVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG 260
VV DIH+ GGTIL +SRG D +IVD +E IN +++IGGDGT +GA+ I +E+E+RG
Sbjct: 140 VVADIHEFGGTILGSSRGPQDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRG 199
Query: 261 LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS 320
L+++V GIPKTIDNDI I KSFGF+TAVE+A AI AHVE NG+G+VKLMGR+S
Sbjct: 200 LKISVIGIPKTIDNDINFIQKSFGFETAVEKATEAIRCAHVEANGAPNGIGLVKLMGRHS 259
Query: 321 GFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVA 380
GFI+ YA LAS+DV+ LIPE PF LEGP GL +E++L E GH VIVVAEGAGQE
Sbjct: 260 GFIAAYAALASKDVNFVLIPEVPFDLEGPNGLLAALEKRLAERGHAVIVVAEGAGQELFD 319
Query: 381 QSMPAVDEKDASGNRLLLDIGLWLTQKIK 409
+ E DASGN L DIGL+L +IK
Sbjct: 320 DT----GETDASGNPKLGDIGLFLKDRIK 344
>gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional.
Length = 459
Score = 397 bits (1023), Expect = e-136
Identities = 172/352 (48%), Positives = 221/352 (62%), Gaps = 21/352 (5%)
Query: 72 VLEDVPHLTNFLPD--LPSYPNPLKKSQAYAVV--------KQTFVSPEDAVAQNIVIQK 121
+E V +L LPD LPS NP V ++ FV +
Sbjct: 3 EIERVNNLIIDLPDAPLPSVVNPDLGECNLRGVFGGNGFLPREAFVDTNSYILSTPRFGP 62
Query: 122 D--SPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEI 179
D + RAGPR+ +YF EV+A IVTCGGLCPG+N VIRE+V L YGV I
Sbjct: 63 DDVIVNTKRWLRAGPRKHLYFNPKEVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTI 122
Query: 180 LGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYI 239
G + GY+G Y ++ + L PK V IH+ GGTIL +SRGG D +VD + GIN ++
Sbjct: 123 YGAKYGYKGLYKEDWIKLDPKDVKTIHRLGGTILGSSRGGFDPKVMVDTLIRHGINILFT 182
Query: 240 IGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299
+GGDGT +GA IYKE+ +R L ++V GIPKTIDNDI +ID+SFGF TAVEEAQ AI AA
Sbjct: 183 LGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVEEAQNAIRAA 242
Query: 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQ 359
+VE +S +NGVGIVKLMGR SGFI+++A++AS DV+ CLIPE LE G+ E+IE++
Sbjct: 243 YVEAKSAKNGVGIVKLMGRDSGFIALHASVASADVNVCLIPEFDIPLE---GVLEYIEQR 299
Query: 360 LKENGHMVIVVAEGAGQEFVAQSMPA--VDEKDASGNRLLLDIGLWLTQKIK 409
L++ GH VIVVAEGAGQ A DASGN+ L DIG++L +I
Sbjct: 300 LQKKGHCVIVVAEGAGQSL----KDADLDLGTDASGNKKLWDIGVYLKDEIT 347
>gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase.
Length = 411
Score = 359 bits (922), Expect = e-122
Identities = 158/281 (56%), Positives = 210/281 (74%), Gaps = 7/281 (2%)
Query: 131 RAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFY 190
RAGPR+K+YF+ +EV+A IVTCGGLCPG+N VIR+IV L +YGV I+GI GYRGF+
Sbjct: 40 RAGPRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLE-IYGVKNIVGIPFGYRGFF 98
Query: 191 SKN--TLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKG 248
K + LS KVV +IH GG++L SRGG T+ IVD+IE RGIN ++++GG+GT G
Sbjct: 99 EKGLSEMPLSRKVVQNIHLSGGSLLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAG 158
Query: 249 AALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVEN 308
A I+ E KR ++V+V G+PKTIDNDI ++DK+FGFDTAVEEAQRAIN+A++E S +
Sbjct: 159 ANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYH 218
Query: 309 GVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVI 368
G+G+VKLMGR SGFI+M+A+LAS VD CLIPE PF L+GP G+ +E ++ G V+
Sbjct: 219 GIGLVKLMGRSSGFIAMHASLASGQVDICLIPEVPFTLDGPNGVLRHLEHLIETKGSAVV 278
Query: 369 VVAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKIK 409
VAEGAGQ+ + ++ + DASGN +L DIG+ L Q+IK
Sbjct: 279 CVAEGAGQDLLQKT----NATDASGNPVLGDIGVHLQQEIK 315
>gnl|CDD|223283 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and
metabolism].
Length = 347
Score = 192 bits (489), Expect = 1e-57
Identities = 92/258 (35%), Positives = 141/258 (54%), Gaps = 18/258 (6%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDI 205
+ I+T GG PG+N VIR +V + + E+ GI GY G + L+ + V+D+
Sbjct: 4 KIAILTSGGDAPGMNAVIRAVV--RTAIKEGLEVFGIYNGYLGLLEGDIKPLTREDVDDL 61
Query: 206 HKRGGTILRTSRGGHDT-----NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG 260
RGGT L ++R +N++ GI+ + +IGGDG+ GAAL+ +E
Sbjct: 62 INRGGTFLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEE----- 116
Query: 261 LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS 320
+ V G+PKTIDNDI+ D + GFDTA+E A AI+ + S + IV++MGR++
Sbjct: 117 GGIPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDNLR-DTASSHERIFIVEVMGRHA 175
Query: 321 GFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIE-RQLKENGHMVIVVAEGAGQ--- 376
G++++ A LA+ D LIPE P L + E R+ + H +IVVAEGA
Sbjct: 176 GWLALAAGLAT-GADIILIPEEPADLIIEELIAEIKAKREARGKKHAIIVVAEGAIDQIG 234
Query: 377 EFVAQSMPAVDEKDASGN 394
E A+ + A++E A G+
Sbjct: 235 ENGAELLAAIEELLALGD 252
>gnl|CDD|233887 TIGR02483, PFK_mixed, phosphofructokinase. Members of this family
that are characterized, save one, are
phosphofructokinases dependent on pyrophosphate (EC
2.7.1.90) rather than ATP (EC 2.7.1.11). The exception
is one of three phosphofructokinases from Streptomyces
coelicolor. Family members are both bacterial and
archaeal [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 324
Score = 170 bits (433), Expect = 9e-50
Identities = 104/272 (38%), Positives = 154/272 (56%), Gaps = 29/272 (10%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTL-SPKVVNDIHK 207
++T GG CPG+N VIR +V YG E++GI G+RG +T+ L + V I
Sbjct: 4 VLTGGGDCPGLNAVIRGVVRRAIAEYG-WEVIGIRDGWRGLLEGDTVPLLDLEDVRGILP 62
Query: 208 RGGTILRTSRGGHDTN------KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGL 261
RGGTIL +SR KIV N+++ G++ + IGGDGT A + + +GL
Sbjct: 63 RGGTILGSSRTNPFKYEEDGDDKIVANLKELGLDALIAIGGDGTLGIA----RRLADKGL 118
Query: 262 QVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSG 321
V G+PKTIDND+ D +FGFDTAVE A A++ H ES + V +V++MGR++G
Sbjct: 119 PVV--GVPKTIDNDLEATDYTFGFDTAVEIATEALDRLHTTAES-HHRVMVVEVMGRHAG 175
Query: 322 FISMYATLASRDVDCCLIPESPFYLEGPGGLFEFI-ERQLKENGHMVIVVAEGA----GQ 376
+I++++ +A D LIPE PF ++ + E + ER + ++VVAEGA G+
Sbjct: 176 WIALHSGIAG-GADVILIPEIPFDID---SVCEKVRERFARGKRFAIVVVAEGAKPKGGE 231
Query: 377 EFVAQSMPAVDEKDASGNRLLLDIGLWLTQKI 408
V + + KDA G+ L IG WL ++I
Sbjct: 232 MVVQEGV-----KDAFGHVRLGGIGNWLAEEI 258
>gnl|CDD|235111 PRK03202, PRK03202, 6-phosphofructokinase; Provisional.
Length = 320
Score = 167 bits (426), Expect = 1e-48
Identities = 88/235 (37%), Positives = 130/235 (55%), Gaps = 23/235 (9%)
Query: 149 IVTCGGLCPGINTVIREIV-CGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHK 207
++T GG PG+N IR +V +S G E+ GI GY G + + L K V+DI
Sbjct: 6 VLTSGGDAPGMNAAIRAVVRTAISE--G-LEVYGIYDGYAGLLEGDIVKLDLKSVSDIIN 62
Query: 208 RGGTILRTSRGGHDTN-----KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQ 262
RGGTIL ++R + K ++N++ GI+ + +IGGDG+ GA + +
Sbjct: 63 RGGTILGSARFPEFKDEEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEH------G 116
Query: 263 VAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGF 322
+ V G+P TIDNDIA D + GFDTA+ A AI+ S E V IV++MGR++G
Sbjct: 117 IPVIGLPGTIDNDIAGTDYTIGFDTALNTAVEAIDRLRDTASSHER-VFIVEVMGRHAGD 175
Query: 323 ISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENG--HMVIVVAEGAG 375
++++A +A + LIPE PF +E L I++ +E G H +IVVAEG
Sbjct: 176 LALHAGIAG-GAEVILIPEVPFDIE---ELCAKIKK-GRERGKKHAIIVVAEGVM 225
>gnl|CDD|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in
glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to PFK family that includes ATP- and
pyrophosphate (PPi)- dependent phosphofructokinases.
Some members evolved by gene duplication and thus have a
large C-terminal/N-terminal extension comprising a
second PFK domain. Generally, ATP-PFKs are allosteric
homotetramers, and PPi-PFKs are dimeric and
nonallosteric except for plant PPi-PFKs which are
allosteric heterotetramers.
Length = 338
Score = 138 bits (349), Expect = 2e-37
Identities = 80/232 (34%), Positives = 122/232 (52%), Gaps = 10/232 (4%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208
++T GG PG+N IR +V G+ E+ GI GY G + L + V+DI R
Sbjct: 5 VLTSGGDAPGMNAAIRGVVRSAIA-EGL-EVYGIYEGYAGLVEGDIKELDWESVSDIINR 62
Query: 209 GGTILRTSRGGHDT-----NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263
GGTI+ ++R K +N++ GI+ + +IGGDG+ GA L+ +E +
Sbjct: 63 GGTIIGSARCKEFRTEEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGF 122
Query: 264 AVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFI 323
V G+P TIDNDI D + GFDTA++ AI+ S +V++MGR+ G I
Sbjct: 123 NVIGLPGTIDNDIKGTDYTIGFDTALKTIVEAIDRIRDTASS-HQRTFVVEVMGRHCGDI 181
Query: 324 SMYATLASRDVDCCLIPESPFYLEGPGGLFEFI-ERQLKENGHMVIVVAEGA 374
++ A LA+ D IPE P E + + I +R+ + H +++VAEGA
Sbjct: 182 ALEAGLAT-GADIIFIPEEPAADEWEEEMVDVIKKRRERGKRHGIVIVAEGA 232
>gnl|CDD|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase. 6-phosphofructokinase
(EC 2.7.1.11) catalyzes the addition of phosphate from
ATP to fructose 6-phosphate to give fructose
1,6-bisphosphate. This represents a key control step in
glycolysis. This model hits bacterial ATP-dependent
6-phosphofructokinases which lack a beta-hairpin loop
present in TIGR02483 family members. TIGR02483 contains
members that are ATP-dependent as well as members that
are pyrophosphate-dependent. TIGR02477 represents the
pyrophosphate-dependent phosphofructokinase,
diphosphate--fructose-6-phosphate 1-phosphotransferase
(EC 2.7.1.90) [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 301
Score = 126 bits (319), Expect = 2e-33
Identities = 80/231 (34%), Positives = 125/231 (54%), Gaps = 18/231 (7%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208
I+T GG PG+N IR +V Y +G E+ GI GY+G + L K V+ I R
Sbjct: 4 ILTSGGDAPGMNAAIRAVVRTAIY-HGF-EVYGIRRGYKGLINGKIEPLESKNVSGIIHR 61
Query: 209 GGTILRTSRGGHDT-----NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263
GGTIL T+R K V+N++ GI + +IGGDG+ GA +Y+E +
Sbjct: 62 GGTILGTARCPEFKTEEVREKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEE-----GGI 116
Query: 264 AVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFI 323
V G+P TIDNDI D + GFDTA+ A++ S E ++++MGR++G +
Sbjct: 117 PVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIRDTATSHER-AFVIEVMGRHAGDL 175
Query: 324 SMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENG-HMVIVVAEG 373
++YA +A+ + +IPE + ++ L + ++ Q + H +I+VAEG
Sbjct: 176 ALYAGIAT-GAEIIIIPEFDYDID---ELIQRLKEQHEAGKKHSIIIVAEG 222
>gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional.
Length = 360
Score = 119 bits (299), Expect = 4e-30
Identities = 91/279 (32%), Positives = 140/279 (50%), Gaps = 31/279 (11%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVN 203
R I+T GG C G+N VIR +V YG E++GI +G ++ + L V+
Sbjct: 6 RIGILTSGGDCAGLNAVIRAVVHRARGTYGW-EVIGIRDATQGLMARPPQYIELDLDQVD 64
Query: 204 DIHKRGGTILRTSRGGHD-------------TNKIVDNIEDRGINQVYIIGGDGTQKGAA 250
D+ + GGTIL T+ G + +I+D G++ + IGGDG+ A
Sbjct: 65 DLLRMGGTILGTTNKGDPFAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGS---LA 121
Query: 251 LIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGV 310
++ + ++ G+ + GIPKTIDND+ + S GFDTAV A A++ H S N V
Sbjct: 122 ILRRLAQQGGINLV--GIPKTIDNDVGATEVSIGFDTAVNIATEALDRLHFTAAS-HNRV 178
Query: 311 GIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFI-ERQLKENGHMVIV 369
I+++MGR +G I++ A +A D LIPE P+ LE + + I ERQ + ++V
Sbjct: 179 MILEVMGRDAGHIALAAGIAG-GADVILIPEIPYTLE---NVCKKIRERQEEGKNFCLVV 234
Query: 370 VAEGAGQEFVAQSMPAVDEKDASGNRLLLDIGLWLTQKI 408
V+E E V + A G IG +L ++I
Sbjct: 235 VSEAVRTE----EGEQVTKTQALGEDRYGGIGQYLAEQI 269
>gnl|CDD|109425 pfam00365, PFK, Phosphofructokinase.
Length = 279
Score = 117 bits (294), Expect = 5e-30
Identities = 79/236 (33%), Positives = 120/236 (50%), Gaps = 26/236 (11%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208
++T GG PG+N IR +V + G+ E+ GI GY G + N L + V+DI +R
Sbjct: 5 VLTSGGDAPGMNAAIRAVV-RSAIAEGL-EVYGIYEGYAGLVAGNIKQLDWESVSDIIQR 62
Query: 209 GGTILRTSRGGHDTN-----KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263
GGT + ++R K +N++ GI+ + +IGGDG+ GA L+ E G
Sbjct: 63 GGTFIGSARCPEFREREGRLKAAENLKKHGIDALVVIGGDGSYTGADLLTSE---HGFNC 119
Query: 264 AVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFI 323
G+P TIDNDI D + GFDTA+ AI+ S +V++MGR+ G +
Sbjct: 120 V--GLPGTIDNDICGTDYTIGFDTALNTIVEAIDRIRDTASS-HQRTFVVEVMGRHCGDL 176
Query: 324 SMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKEN-----GHMVIVVAEGA 374
++ A +A D IPE+PF+ E + +LK H +++VAEGA
Sbjct: 177 ALVAGIAG-GADYIFIPEAPFW-------EEELCNRLKRGRERGKRHNIVIVAEGA 224
>gnl|CDD|238388 cd00763, Bacterial_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include bacterial ATP-dependent
phosphofructokinases. These are allosrterically
regulated homotetramers; the subunits are of about 320
amino acids.
Length = 317
Score = 117 bits (295), Expect = 6e-30
Identities = 76/244 (31%), Positives = 121/244 (49%), Gaps = 21/244 (8%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDI 205
R ++T GG PG+N IR +V + G+ E+ GI GY G + + + L V+DI
Sbjct: 2 RIGVLTSGGDAPGMNAAIRGVV-RSAIAEGL-EVYGIRDGYAGLIAGDIVPLDRYSVSDI 59
Query: 206 HKRGGTILRTSRGGH--DTN---KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG 260
RGGT L ++R D K ++ ++ GI+ + +IGGDG+ GA + +
Sbjct: 60 INRGGTFLGSARFPEFKDEEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH----- 114
Query: 261 LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS 320
G+P TIDNDI D + GFDTA+ AI+ + S + +V++MGR+
Sbjct: 115 -GFPCVGLPGTIDNDIPGTDYTIGFDTALNTVVEAIDRIR-DTSSSHQRISVVEVMGRHC 172
Query: 321 GFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIER-QLKENGHMVIVVAEGA--GQE 377
G I++ A +A + +IPE+ F E + I+ + H ++VVAEG E
Sbjct: 173 GDIALAAGIAG-GAEFIVIPEAEFDRE---EVANRIKAGIERGKKHAIVVVAEGVYDVDE 228
Query: 378 FVAQ 381
+
Sbjct: 229 LAKE 232
>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional.
Length = 1419
Score = 95.1 bits (236), Expect = 8e-21
Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 7/191 (3%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208
I+ GG PG + VI I +++G GG G YSKN +T++ ++N
Sbjct: 182 IILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRFRNL 241
Query: 209 GGTILRTSRGGHDTNK----IVDNIEDR-GINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263
GG + S G NK ++NI + +N + IIGGDG+ AALI + +R + +
Sbjct: 242 GGFNMLWSGRGKVRNKDDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPI 301
Query: 264 AVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSG 321
++ GIPKTID D+ I+ SFGFDTA + I +V++ N +V++MGR +
Sbjct: 302 SIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEVIGNLCTDVKTGHNVYHVVRVMGRSAS 361
Query: 322 FISMYATLASR 332
+ + L +R
Sbjct: 362 HVVLECALQTR 372
Score = 34.6 bits (79), Expect = 0.11
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI--AVID 280
NK+ + + + +N + + G + T AAL+ + ++ + +V GIP T N++ +I+
Sbjct: 918 NKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIE 977
Query: 281 KSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGR 318
GFD++ + I + S+ ++LMGR
Sbjct: 978 TCVGFDSSTKVYASLIGNVLTDAVSMPKYWHFIRLMGR 1015
>gnl|CDD|237600 PRK14072, PRK14072, 6-phosphofructokinase; Provisional.
Length = 416
Score = 87.6 bits (218), Expect = 7e-19
Identities = 56/199 (28%), Positives = 100/199 (50%), Gaps = 21/199 (10%)
Query: 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKS 282
++++ + I + GG+ + A + + +K G + GIPKTIDND+ D
Sbjct: 93 ERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHC 152
Query: 283 FGFDTAVEEAQRAINAAHVEVESVENG--VGIVKLMGRYSGFISMYATLASRDVDCC--- 337
GF +A + ++ A ++V ++ N V I+++MGR++G+++ A LA ++ D
Sbjct: 153 PGFGSAAKYIATSVLEAALDVAAMANTSKVFILEVMGRHAGWLAAAAALAKQNPDDAPHL 212
Query: 338 -LIPESPFYLEGPGGLFEFIE---RQLKENGHMVIVVAEG---AGQEFVAQSMPAVDEKD 390
+PE PF E +F+ +K G+ V+VV+EG A +F+A+ A +D
Sbjct: 213 IYLPERPFDEE------KFLADVRAIVKRYGYCVVVVSEGIRDADGKFIAE---AGLAED 263
Query: 391 ASGNRLLLDIGLWLTQKIK 409
A G+ L + L IK
Sbjct: 264 AFGHAQLGGVAPVLANLIK 282
>gnl|CDD|180620 PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Validated.
Length = 403
Score = 82.4 bits (204), Expect = 4e-17
Identities = 76/304 (25%), Positives = 138/304 (45%), Gaps = 51/304 (16%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVND- 204
+ ++T GGL P +++ + ++ + + EI+ GY+G +++ ++P V +
Sbjct: 5 KVALLTAGGLAPCLSSAVGGLIERYTEIAPEVEIIAYRSGYQGLLLGDSIEITPAVRANA 64
Query: 205 --IHKRGGTILRTSR----------------GGHDTNKI-VDNIEDRGINQVYIIGGDGT 245
+H+ GG+ + SR G + K+ + + G++ ++ IGGD T
Sbjct: 65 GLLHRYGGSPIGNSRVKLTNVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDDT 124
Query: 246 QKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVES 305
AA + + + G + V G+PKTIDND+ I +S G TA E+ A +V E
Sbjct: 125 NTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAEQG--ARFFDNVINEH 182
Query: 306 VENGVGIV--KLMGRYSGFISMYATLASR-------------------DVDCCLIPESPF 344
N ++ ++MGR G+++ A R D+ +PE F
Sbjct: 183 SANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERWDIHAVYLPEMAF 242
Query: 345 YLEGPGGLFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDE---KDASGNRLL--LD 399
LE E ++ + E G++ I ++EGAG + + M A E +DA G+ L ++
Sbjct: 243 DLEAEA---ERLKAVMDEVGNVNIFLSEGAGLDAIVAEMEAAGEEVKRDAFGHVKLDTIN 299
Query: 400 IGLW 403
G W
Sbjct: 300 PGAW 303
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type.
Members of this family are eukaryotic (with one
exception) ATP-dependent 6-phosphofructokinases (EC
2.7.1.11) in which two tandem copies of the
phosphofructokinase are found. Members are found, often
including several isozymes, in animals and fungi and in
the bacterium Propionibacterium acnes KPA171202 (a human
skin commensal).
Length = 746
Score = 80.5 bits (199), Expect = 3e-16
Identities = 69/260 (26%), Positives = 114/260 (43%), Gaps = 47/260 (18%)
Query: 149 IVTCGGLCPGINTVIREIV-CGLSY---MYGVDEILGIEGGYRGFYSKNTLTLSPKVVND 204
++T GG G+N +R +V + +Y + E G +G G N + V
Sbjct: 5 VLTSGGDAQGMNAAVRAVVRMAIYVGCRVYAIRE--GYQGLVDG--GDNIEEAQWEDVRG 60
Query: 205 IHKRGGTILRTSR--------GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAAL----- 251
I GGTI+ T+R G K N+ GI+ + +IGGDG+ GA L
Sbjct: 61 ILSLGGTIIGTARCKEFRERPG---RLKAARNLVSNGIDALVVIGGDGSLTGADLFREEW 117
Query: 252 ------------IYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299
I E + + + G+ +IDND+ D + G D+A+ AI+A
Sbjct: 118 PSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDMTIGADSALHRICEAIDAI 177
Query: 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQ 359
+S + +V++MGR+ G++++ A +A+ D IPE P + + +
Sbjct: 178 SSTAQSHQRAF-VVEVMGRHCGYLALMAAIAT-GADYVFIPERPPEEGWE----DQLCHK 231
Query: 360 LKENGHM-----VIVVAEGA 374
LK N +++VAEGA
Sbjct: 232 LKRNRKAGKRKTIVIVAEGA 251
Score = 76.6 bits (189), Expect = 6e-15
Identities = 59/264 (22%), Positives = 107/264 (40%), Gaps = 7/264 (2%)
Query: 134 PREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKN 193
++ V ++ +R I+ G G+N R V + ++ I G+ G +
Sbjct: 379 DKKLVPSEASRLRIAIIHVGAPAGGMNAATRSAV--RYALARGHTVIAIHNGFSGLARHD 436
Query: 194 TLTLSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAAL 251
L+ V GG+ L T+R G D I + I+ + IIGG +
Sbjct: 437 VRELTWSDVEGWVGEGGSELGTNRSLPGDDLGTIAYYFQQHKIDGLIIIGGFEAFEALYQ 496
Query: 252 IYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGV 310
+ EK ++ + IP TI N++ + S G DTA+ E + + + V
Sbjct: 497 LDAAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALNEITEYCDNIKQSASASKRRV 556
Query: 311 GIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVV 370
+V+ MG YSG+++ A LA+ D IPE L+ E ++ E +++
Sbjct: 557 FVVETMGGYSGYLATMAGLAT-GADAAYIPEEGISLKDLQEDIEHLKETFAEGRAGKLIL 615
Query: 371 -AEGAGQEFVAQSMPAVDEKDASG 393
E A + + + + ++ G
Sbjct: 616 RNEKASKVYTTDFIARIISEEGKG 639
>gnl|CDD|131530 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosphate
1-phosphotransferase. Diphosphate--fructose-6-phosphate
1-phosphotransferase catalyzes the addition of phosphate
from diphosphate (PPi) to fructose 6-phosphate to give
fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is
also known as pyrophosphate-dependent
phosphofructokinase. The usage of PPi-dependent enzymes
in glycolysis presumably frees up ATP for other
processes. TIGR02482 represents the ATP-dependent
6-phosphofructokinase enzyme contained within Pfam
pfam00365: Phosphofructokinase. This model hits
primarily bacterial, plant alpha, and plant beta
sequences [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 539
Score = 77.4 bits (191), Expect = 2e-15
Identities = 69/266 (25%), Positives = 115/266 (43%), Gaps = 23/266 (8%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208
++ GG PG + VI + L + ++ G GG G N + L+ ++++
Sbjct: 72 VILSGGQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNT 131
Query: 209 GG-TILRTSRGGHDT----NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263
GG I+ + R +T K + + ++ + IIGGD + AAL+ + K GL+
Sbjct: 132 GGFDIIGSGRTKIETEEQFAKALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKT 191
Query: 264 AVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSG 321
V G+PKTID D+ I+ SFGFDTA + I + S + ++LMGR +
Sbjct: 192 QVIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGNICRDALSAKKYWHFIRLMGRSAS 251
Query: 322 FISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIE--------RQLKENGHMVIVVAEG 373
I++ L + + C+I E L + + R K VI++ EG
Sbjct: 252 HIALECALQTHP-NVCIIGEE--VAAKKMTLSQLTDYIADVIVKRAAKGKNFGVILIPEG 308
Query: 374 AGQEFVAQSMPAVDEKDASGNRLLLD 399
+ + +P V N LL
Sbjct: 309 -----LIEFIPEVQALIKELNNLLAQ 329
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein;
Provisional.
Length = 1328
Score = 78.1 bits (192), Expect = 2e-15
Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 7/194 (3%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDI 205
R +V GG G + VI ++ + ++ G GG G YS+ L+ +N I
Sbjct: 104 RIGVVLSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDDINGI 163
Query: 206 HKRGG-TILRTSRGGHDTNKIVD---NI-EDRGINQVYIIGGDGTQKGAALIYKEVEKRG 260
+GG I+ + R +T + + I E ++ + +IGGD + AA++ + ++
Sbjct: 164 LNQGGFNIICSGRHKIETEEQMRASLEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNS 223
Query: 261 LQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGR 318
V G PKTID D+ VI+ SFG+DTAV+ I + +++ G V+LMGR
Sbjct: 224 SSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQIGSIMDAIKTEGYGYYFVRLMGR 283
Query: 319 YSGFISMYATLASR 332
+ I++ L +R
Sbjct: 284 SASHITLECGLQTR 297
>gnl|CDD|238390 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include pyrophosphate-dependent
phosphofructokinases. These are found in bacteria as
well as plants. These may be dimeric nonallosteric
enzymes as in bacteria or allosteric heterotetramers as
in plants.
Length = 550
Score = 74.9 bits (184), Expect = 2e-14
Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 8/204 (3%)
Query: 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVND 204
++ IV GG PG + VI + L + G +GG G + + L+ + +
Sbjct: 73 LKIGIVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQP 132
Query: 205 IHKRGG-TILRTSRGGHDT----NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR 259
GG ++ + R +T + + + ++ + +IGGD + AAL+ + +
Sbjct: 133 YRNTGGFDMICSGRTKIETEDQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSK 192
Query: 260 GLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMG 317
GL+ V G+PKTID D+ I+ SFGFDTA + I + S VKLMG
Sbjct: 193 GLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVMRDARSTGKYWHFVKLMG 252
Query: 318 RYSGFISMYATLASRDVDCCLIPE 341
R + I++ L + + C+I E
Sbjct: 253 RSASHIALECALKTHP-NICIISE 275
>gnl|CDD|238389 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include eukaryotic ATP-dependent
phosphofructokinases. These have evolved from the
bacterial PFKs by gene duplication and fusion events and
exhibit complex allosteric behavior.
Length = 762
Score = 74.9 bits (184), Expect = 2e-14
Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 37/255 (14%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS--KNTLTLSPKVVNDIH 206
++T GG G+N +R +V + G EG Y G + V++
Sbjct: 8 VLTSGGDAQGMNAAVRAVV-RMGIYVGAKVFFVYEG-YEGLVKGGDYIKQAEWESVSNWL 65
Query: 207 KRGGTILRTSRGGHDTN-----KIVDNIEDRGINQVYIIGGDGTQKGAAL---------- 251
+ GGTI+ ++R + N+ RGI + +IGGDG+ GA L
Sbjct: 66 QEGGTIIGSARCKEFREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLE 125
Query: 252 -------IYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVE 304
I +E + + + G+ +IDND D + G D+A+ ++A +
Sbjct: 126 ELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGTDMTIGTDSALHRICEVVDAITTTAQ 185
Query: 305 SVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENG 364
S + ++++MGR+ G++++ + LA+ D IPE P G + + R+L E+
Sbjct: 186 SHQRTF-VLEVMGRHCGYLALVSGLAT-GADWIFIPERP----PEDGWEDQMCRRLSEHR 239
Query: 365 HM-----VIVVAEGA 374
+I+VAEGA
Sbjct: 240 SRGKRLNIIIVAEGA 254
Score = 67.2 bits (164), Expect = 7e-12
Identities = 55/214 (25%), Positives = 86/214 (40%), Gaps = 14/214 (6%)
Query: 141 KSDEVRACIVTCGGLCPGINTVIREIV-CGLSYMYGVDEILGIEGGYRGFYSKNTLTLSP 199
+ + IV G G+N +R V GL++ + I G+ G + L
Sbjct: 386 EKTNLNIAIVNVGAPAAGMNAAVRSAVRYGLAHGHRP---YAIYDGFEGLAKGQIVELGW 442
Query: 200 KVVNDIHKRGGTILRTSR--GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVE 257
V RGG+ L T R D I N + GI+ + I+GG KG + + E
Sbjct: 443 IDVGGWTGRGGSELGTKRTLPKKDLETIAYNFQKYGIDGLIIVGGFEAYKG---LLQLRE 499
Query: 258 KRG----LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIV 313
R + + IP T+ N++ D S G DTA+ + + + V IV
Sbjct: 500 AREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALNALMKYCDRIKQSASGTKRRVFIV 559
Query: 314 KLMGRYSGFISMYATLASRDVDCCLIPESPFYLE 347
+ MG Y G+++ LA D + E PF +
Sbjct: 560 ETMGGYCGYLATMTGLAV-GADAAYVFEEPFNIR 592
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 555
Score = 66.1 bits (162), Expect = 1e-11
Identities = 56/211 (26%), Positives = 98/211 (46%), Gaps = 30/211 (14%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208
++ GG PG + VI + GL + ++ G GG G + + ++ +V+++
Sbjct: 75 VILSGGQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNT 134
Query: 209 GG-TILRTSRGGHDT----NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263
GG ++ + R +T ++ ++ ++ + IIGGD + AA++ + K G +
Sbjct: 135 GGFDMIGSGRTKIETEEQKEACLETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKT 194
Query: 264 AVAGIPKTIDNDI--AVIDKSFGFDTA-------VEEAQRAINAA----HVEVESVENGV 310
V G+PKTID D+ I+ SFGFDTA + R +A H
Sbjct: 195 QVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMIGNISRDALSAKKYWHF--------- 245
Query: 311 GIVKLMGRYSGFISMYATLASRDVDCCLIPE 341
+KLMGR + I++ L + + CLI E
Sbjct: 246 --IKLMGRSASHIALECALQTHP-NICLISE 273
>gnl|CDD|215543 PLN03028, PLN03028, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 610
Score = 60.9 bits (148), Expect = 4e-10
Identities = 56/215 (26%), Positives = 96/215 (44%), Gaps = 10/215 (4%)
Query: 127 VHFRRA---GPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIE 183
HF RA P +V + VR +V CG PG + VI + L +LG
Sbjct: 59 AHFLRATAKVPDAQVITEHPAVRVGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFL 118
Query: 184 GGYRGFYSKNTLTLSPKVVNDIHKRGGTIL--RTS---RGGHDTNKIVDNIEDRGINQVY 238
GG G +++ TL ++ V++ +GG L RT R N + E ++ +
Sbjct: 119 GGTEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTEQVNAALAACEALKLDGLV 178
Query: 239 IIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAI 296
IIGG + AA + + + + V G+P T++ D+ ++ + GFDT + + I
Sbjct: 179 IIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLI 238
Query: 297 NAAHVEVESVENGVGIVKLMGRYSGFISMYATLAS 331
+ + S E ++LMGR + +++ L S
Sbjct: 239 SNVCTDALSAEKYYYFIRLMGRKASHVALECALQS 273
>gnl|CDD|215140 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase.
Length = 568
Score = 54.8 bits (132), Expect = 4e-08
Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 8/206 (3%)
Query: 134 PREKVYFKSDE-VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK 192
P + SD+ ++ +V GG PG + VI I L + G +GG G
Sbjct: 85 PSQADALSSDQKLKIGVVLSGGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKC 144
Query: 193 NTLTLSPKVVNDIHKRGG-TILRTSRGGHDT----NKIVDNIEDRGINQVYIIGGDGTQK 247
+ L+ + + +GG ++ + R +T + + ++ + +IGGD +
Sbjct: 145 KYVELTAEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEETATKLDLDGLVVIGGDDSNT 204
Query: 248 GAALIYKEVEKRGLQVAVAGIPKTIDNDIAV--IDKSFGFDTAVEEAQRAINAAHVEVES 305
A L+ + + L+ V G PKTID D+ + SFGFDTA + I ++ S
Sbjct: 205 NACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNVMIDARS 264
Query: 306 VENGVGIVKLMGRYSGFISMYATLAS 331
V+LMGR + I++ L +
Sbjct: 265 TGKYYHFVRLMGRAASHITLECALQT 290
>gnl|CDD|236102 PRK07804, PRK07804, L-aspartate oxidase; Provisional.
Length = 541
Score = 36.1 bits (84), Expect = 0.031
Identities = 27/107 (25%), Positives = 36/107 (33%), Gaps = 27/107 (25%)
Query: 208 RGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 267
G T GGH +IV GGD T GA EV+ R L AV
Sbjct: 117 PDGRWALTREGGHSRRRIVH------------AGGDAT--GA-----EVQ-RALDAAVR- 155
Query: 268 IPKTIDNDIAVIDKSFGFDTAVEEAQRAINA-AHVEVESVENGVGIV 313
+ + + + + D + HV E +GVG V
Sbjct: 156 -----ADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAV 197
>gnl|CDD|225740 COG3199, COG3199, Predicted inorganic polyphosphate/ATP-NAD kinase
[General function prediction only].
Length = 355
Score = 32.0 bits (73), Expect = 0.54
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 209 GGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268
+ RT+ DT V + +RG++ + GGDGT A + + V G V V GI
Sbjct: 78 QESTPRTTA--EDTINAVRRMVERGVDLIVFAGGDGT---ARDVAEAV---GADVPVLGI 129
Query: 269 P 269
P
Sbjct: 130 P 130
>gnl|CDD|129330 TIGR00227, ribD_Cterm, riboflavin-specific deaminase C-terminal
domain. Eubacterial riboflavin-specific deaminases have
a zinc-binding domain recognized by the dCMP_cyt_deam
model toward the N-terminus and this domain toward the
C-terminus. Yeast HTP reductase, a
riboflavin-biosynthetic enzyme, and several archaeal
proteins believed related to riboflavin biosynthesis
consist only of this domain and lack the dCMP_cyt_deam
domain.
Length = 216
Score = 31.2 bits (71), Expect = 0.78
Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 10/84 (11%)
Query: 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGVHF 129
G VL D P LT +L NP++ V+ P A ++ D+P V
Sbjct: 51 GTVLADDPRLTVRWVELDELRNPVR-----VVLDSQLRVPPTAR----LLNDDAPTWVAT 101
Query: 130 RRAGPREKVYFKSDEVRACIVTCG 153
EKV D ++
Sbjct: 102 TEPADEEKVKELED-FGVEVLVLE 124
>gnl|CDD|241323 cd13169, RanBD_NUP50_plant, Ran-binding protein 2, repeat 1.
RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358
kDa nucleoporin, and nuclear pore complex (NPC) protein
Nup358) is a giant nucleoporin that localizes to the
cytosolic face of the NPC. RanBP2 contains a
leucine-rich region, 8 zinc-finger motifs, a cyclophilin
A homologous domain, and 4 RanBDs. Ran is a Ras-like
nuclear small GTPase, which regulates receptor-mediated
transport between the nucleus and the cytoplasm. RanGTP
hydrolysis is stimulated by RanGAP together with the
Ran-binding domain containing acessory proteins RanBP1
and RanBP2. These accessory proteins stabilize the
active GTP-bound form of Ran. All eukaryotic cells
contain RanBP1, but in vertebrates however, the main
RanBP seems to be RanBP2. There is no RanBP2 ortholog in
yeast. Transport complex disassembly is accomplished by
a small ubiquitin-related modifier-1 (SUMO-1)-modified
version of RanGAP that is bound to RanBP2. RanBP1 acts
as a second line of defense against exported
RanGTP#importin complexes which have escaped from
dissociation by RanBP2. RanBP2 also interacts with the
importin subunit beta-1. RabBD shares structural
similarity to the PH domain, but lacks detectable
sequence similarity. The first RanBD2 is present in this
hierarchy.
Length = 112
Score = 30.1 bits (68), Expect = 0.83
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 12/65 (18%)
Query: 348 GPGGLFEFIERQLKE--NGHMVIVVAEGAGQEFVAQSMPAVDEKDASGN-RLLLDIGLWL 404
G G LFEFI KE G + + ++ V + A GN RLLL+ L+
Sbjct: 7 GDGALFEFITGGWKERGRGELRVNLSTTGKARLVMR---------AKGNYRLLLNANLFP 57
Query: 405 TQKIK 409
K+
Sbjct: 58 DMKLT 62
>gnl|CDD|220382 pfam09754, PAC2, PAC2 family. This PAC2 (Proteasome assembly
chaperone) family of proteins is found in bacteria,
archaea and eukaryotes. Proteins in this family are
typically between 247 and 307 amino acids in length.
These proteins function as a chaperone for the 26S
proteasome. The 26S proteasome mediates
ubiquitin-dependent proteolysis in eukaryotic cells. A
number of studies including very recent ones have
revealed that assembly of its 20S catalytic core
particle is an ordered process that involves several
conserved proteasome assembly chaperones (PACs). Two
heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4,
promote the assembly of rings composed of seven alpha
subunits.
Length = 220
Score = 30.4 bits (69), Expect = 1.3
Identities = 28/143 (19%), Positives = 41/143 (28%), Gaps = 40/143 (27%)
Query: 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDK 281
I+D E+ G+++V +GG AG+P T
Sbjct: 88 AEAILDWAEELGVSEVITLGG---------------------LPAGVPHTRPPVTGA--- 123
Query: 282 SFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVDCCLIPE 341
E + E+ VGI SG + A L+ E
Sbjct: 124 -----ATDPELIDELKEEGPELSEYGGPVGI-------SGLLLGEAEQRGIPA-VSLLAE 170
Query: 342 SPFYLEGPGG---LFEFIERQLK 361
P YL P L E + + L
Sbjct: 171 VPHYLPDPKAALALLEALSKLLG 193
>gnl|CDD|206671 cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-binding proteins.
EF-Tu subfamily. This subfamily includes orthologs of
translation elongation factor EF-Tu in bacteria,
mitochondria, and chloroplasts. It is one of several
GTP-binding translation factors found in the larger
family of GTP-binding elongation factors. The eukaryotic
counterpart, eukaryotic translation elongation factor 1
(eEF-1 alpha), is excluded from this family. EF-Tu is
one of the most abundant proteins in bacteria, as well
as, one of the most highly conserved, and in a number of
species the gene is duplicated with identical function.
When bound to GTP, EF-Tu can form a complex with any
(correctly) aminoacylated tRNA except those for
initiation and for selenocysteine, in which case EF-Tu
is replaced by other factors. Transfer RNA is carried to
the ribosome in these complexes for protein translation.
Length = 195
Score = 29.9 bits (68), Expect = 1.6
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 286 DTAVEEAQRA--INAAHVEVES 305
D A EE R IN AHVE E+
Sbjct: 41 DKAPEEKARGITINTAHVEYET 62
>gnl|CDD|107306 cd06311, PBP1_ABC_sugar_binding_like_3, Periplasmic sugar-binding
domain of uncharacterized ABC-type transport systems.
Periplasmic sugar-binding domain of uncharacterized
ABC-type transport systems that share homology with a
family of pentose/hexose sugar-binding proteins of the
type I periplasmic binding protein superfamily, which
consists of two domains connected by a three-stranded
hinge. The substrate specificity of this group is not
known, but it is predicted to be involved in the
transport of sugar-containing molecules and chemotaxis.
Length = 274
Score = 30.0 bits (68), Expect = 1.8
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 12/67 (17%)
Query: 231 DRGINQVYI----IGGDGTQKG---AALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSF 283
DRG++ + GD G I ++ G V + GIP IDN ++
Sbjct: 92 DRGLSSPGAQDLYVAGDNYGMGRVAGEYIATKLGGNGNIVVLRGIPTPIDN-----ERVD 146
Query: 284 GFDTAVE 290
FD A+
Sbjct: 147 AFDAAIA 153
>gnl|CDD|130188 TIGR01118, lacA, galactose-6-phosphate isomerase, LacA subunit.
This family contains members from low GC gram-positive
bacteria. Galactose-6-phosphate isomerase is involved in
lactose catabolism by the tagatose-6-phosphate pathway
[Energy metabolism, Biosynthesis and degradation of
polysaccharides].
Length = 141
Score = 29.1 bits (65), Expect = 2.3
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 352 LFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDE 388
L + I+ L +NG VI V EG GQ+FV ++ E
Sbjct: 14 LKDVIKNFLVDNGFEVIDVTEGDGQDFVDVTLAVASE 50
>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 29.1 bits (66), Expect = 3.1
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 358 RQLKENGHMVIVVAEGAGQEFV 379
QLK G +VI V G Q +
Sbjct: 157 DQLKPGGRLVIPVGSGPAQRLL 178
>gnl|CDD|184062 PRK13455, PRK13455, F0F1 ATP synthase subunit B; Provisional.
Length = 184
Score = 28.6 bits (64), Expect = 3.8
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 254 KEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297
K V R + VAVA I + D + D A++E + ++
Sbjct: 141 KAVRDRAVSVAVAAAADVIAKQMTAADANALIDEAIKEVEARLH 184
>gnl|CDD|237021 PRK11914, PRK11914, diacylglycerol kinase; Reviewed.
Length = 306
Score = 28.6 bits (64), Expect = 5.5
Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 27/146 (18%)
Query: 200 KVVNDIHKRGGTILR-TSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK 258
+ + +H RG ++ HD +V +G + + ++GGDG V
Sbjct: 30 RAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDG-----------VIS 78
Query: 259 RGLQVAVAG------IPKTIDNDIAVIDKSFGFDTAVEEAQRAINA----AHVEVESVEN 308
LQV IP ND A + FG T EA + V++ +++
Sbjct: 79 NALQVLAGTDIPLGIIPAGTGNDHA---REFGIPTGDPEAAADVIVDGWTETVDLGRIQD 135
Query: 309 GVGIVKLMGRY--SGFISMYATLASR 332
GIVK G +GF S+ A+R
Sbjct: 136 DDGIVKWFGTVAATGFDSLVTDRANR 161
>gnl|CDD|130081 TIGR01008, rpsC_E_A, ribosomal protein S3, eukaryotic/archaeal
type. This model describes ribosomal protein S3 of the
eukaryotic cytosol and of the archaea. TIGRFAMs model
TIGR01009 describes the bacterial/organellar type,
although the organellar types have a different
architecture with long insertions and may score poorly
[Protein synthesis, Ribosomal proteins: synthesis and
modification].
Length = 195
Score = 28.5 bits (64), Expect = 5.6
Identities = 13/44 (29%), Positives = 17/44 (38%)
Query: 111 DAVAQNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGG 154
+A Q I + RG+HFRRA + VT G
Sbjct: 89 NAQVQAERIARSLERGLHFRRAAYTAVRRIMEAGAKGVEVTISG 132
>gnl|CDD|235986 PRK07313, PRK07313, phosphopantothenoylcysteine decarboxylase;
Validated.
Length = 182
Score = 28.0 bits (63), Expect = 6.2
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 358 RQLKENGHMVIVVAEGAGQEFV 379
QL + G+ V V+ A +F+
Sbjct: 22 SQLTKRGYQVTVLMTKAATKFI 43
>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like
domain. Type 1 glutamine amidotransferase
(GATase1)-like domain. This group includes proteins
similar to Class I glutamine amidotransferases, the
intracellular PH1704 from Pyrococcus horikoshii, the
C-terminal of the large catalase: Escherichia coli
HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4
beta-galactosidase middle domain. The majority of
proteins in this group have a reactive Cys found in the
sharp turn between a beta strand and an alpha helix
termed the nucleophile elbow. For Class I glutamine
amidotransferases proteins which transfer ammonia from
the amide side chain of glutamine to an acceptor
substrate, this Cys forms a Cys-His-Glu catalytic triad
in the active site. Glutamine amidotransferases
activity can be found in a range of biosynthetic enzymes
included in this cd: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole glycerol
phosphate synthase and, cobyric acid synthase. For
Pyrococcus horikoshii PH1704, the Cys of the nucleophile
elbow together with a different His and, a Glu from an
adjacent monomer form a catalytic triad different from
the typical GATase1 triad. The E. coli HP-II C-terminal
domain, S. meliloti Rm1021 ThuA and the A4
beta-galactosidase middle domain lack the catalytic
triad typical GATaseI domains. GATase1-like domains can
occur either as single polypeptides, as in Class I
glutamine amidotransferases, or as domains in a much
larger multifunctional synthase protein, such as CPSase.
Length = 115
Score = 27.6 bits (61), Expect = 6.4
Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 31/134 (23%)
Query: 276 IAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVD 335
+AV+ + + A+ A EV+ V G V+ + + D D
Sbjct: 1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVE------------SDVDLDDYD 48
Query: 336 CCLIP---ESPFYLEGPGGLFEFIERQLKEN--------GHMVIVVAEGAGQEFVAQSMP 384
++P +P L L + G ++V+ Q P
Sbjct: 49 GLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLLVLG--------VQFHP 100
Query: 385 AVDEKDASGNRLLL 398
+ +G RLL+
Sbjct: 101 EAIDGAEAGARLLV 114
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are encoded
near genes for homologs of PfaB, PfaC, and/or PfaD.
Length = 2582
Score = 28.8 bits (64), Expect = 7.1
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 223 NKIVDNI--EDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI-------D 273
NK+V ++ E + ++ D A ++ +++ G QVAV P +
Sbjct: 1741 NKLVQDVTGEGKQSGANALVIDDDGH-NAGVLAEKLIAAGWQVAVVRSPWVVSHSASPLA 1799
Query: 274 NDIAVIDKSFGFDTAVEEAQRAINAAHVEVESV 306
+ IA + DT++E + I +++
Sbjct: 1800 SAIASVTLGTIDDTSIEAVIKDIEEKTAQIDGF 1832
>gnl|CDD|235513 PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase; Validated.
Length = 399
Score = 28.6 bits (65), Expect = 7.6
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 358 RQLKENGHMVIVVAEGAGQEFVAQ-SMPAVDEKDASGNRLLLD 399
R+L++ G V VV A ++FV + A SGN + D
Sbjct: 27 RRLRKAGADVRVVMTEAAKKFVTPLTFQA-----LSGNPVSTD 64
>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 205
Score = 27.9 bits (62), Expect = 9.2
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 358 RQLKENGHMVIVVAEGAGQ 376
RQLK+ G +VI V EG GQ
Sbjct: 161 RQLKDGGVLVIPVEEGVGQ 179
>gnl|CDD|214695 smart00493, TOPRIM, topoisomerases, DnaG-type primases, OLD family
nucleases and RecR proteins.
Length = 75
Score = 26.1 bits (58), Expect = 9.4
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 198 SPKVVNDIHKRGGTILR-TSRGGH-DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK 254
P + K GG + GGH + + + ++ I+ D ++G A+ ++
Sbjct: 8 GPADAIALEKAGGKRGNVVALGGHLLSKEQIKLLKKLAKKAEVILATDPDREGEAIAWE 66
>gnl|CDD|181505 PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA;
Reviewed.
Length = 142
Score = 27.0 bits (60), Expect = 10.0
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 352 LFEFIERQLKENGHMVIVVAEGAGQEFVAQSMPAVDE 388
L E ++ L++N + V+ V E ++FV ++ E
Sbjct: 14 LKEVVKDYLEDNKYEVVDVTEEGAEDFVDSTLAVAKE 50
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.138 0.401
Gapped
Lambda K H
0.267 0.0755 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,478,437
Number of extensions: 2169012
Number of successful extensions: 2162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2087
Number of HSP's successfully gapped: 63
Length of query: 413
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 314
Effective length of database: 6,546,556
Effective search space: 2055618584
Effective search space used: 2055618584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)