RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 015095
(413 letters)
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
phosphofructokinase {Lyme disease spirochete (Borrelia
burgdorferi) [TaxId: 139]}
Length = 550
Score = 206 bits (526), Expect = 6e-62
Identities = 69/305 (22%), Positives = 125/305 (40%), Gaps = 22/305 (7%)
Query: 87 PSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPR-----GVHFRRAGPREKVYFK 141
P PN LKK + + + +A+ +++ + F
Sbjct: 12 PKLPNILKK--DFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTEGESSLS---F 66
Query: 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKV 201
S + I+ GG PG + VI + + ++ G +GG G + + L+ +
Sbjct: 67 SKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESL 126
Query: 202 VNDIHKRGGTILRTSRGGH-----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEV 256
+N GG + +S NK + ++ +N + IIGGD + AA++ +
Sbjct: 127 INSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYF 186
Query: 257 EKRGLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVK 314
+K G + V G+PKTID D+ I+ SFGFD+A + I + S + VK
Sbjct: 187 KKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVK 246
Query: 315 LMGRYSGFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFI-----ERQLKENGHMVIV 369
LMGR + +++ L + C + E + + + + +R L + V++
Sbjct: 247 LMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVI 306
Query: 370 VAEGA 374
V EG
Sbjct: 307 VPEGL 311
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 153 bits (388), Expect = 4e-44
Identities = 72/234 (30%), Positives = 114/234 (48%), Gaps = 17/234 (7%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDI 205
R ++T GG PG+N IR +V +Y E+ G+ GY G + N L V DI
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVV--RKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDI 60
Query: 206 HKRGGTILRTSRGGH-----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG 260
RGGTIL T+R K ++ ++ GI + +IGGDG+ +GA + +
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEHGFP-- 118
Query: 261 LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS 320
G+P TIDNDI D + GFDTA+ AI+ + + ++++MGR++
Sbjct: 119 ----CVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIR-DTATSHERTYVIEVMGRHA 173
Query: 321 GFISMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGA 374
G I++++ LA + LIPE+ + + + H +I+VAEG
Sbjct: 174 GDIALWSGLAG-GAETILIPEADYDMNDVIA--RLKRGHERGKKHSIIIVAEGV 224
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
{Escherichia coli [TaxId: 562]}
Length = 320
Score = 148 bits (375), Expect = 4e-42
Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 17/233 (7%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208
++T GG PG+N IR +V S + E++GI GY G Y + L V+D+ R
Sbjct: 7 VLTSGGDAPGMNAAIRGVV--RSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINR 64
Query: 209 GGTILRTSRGGHDTNK-----IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263
GGT L ++R ++ ++N++ RGI+ + +IGGDG+ GA + +
Sbjct: 65 GGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFP----- 119
Query: 264 AVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFI 323
G+P TIDNDI D + GF TA+ AI+ S + +V++MGRY G +
Sbjct: 120 -CIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSS-HQRISVVEVMGRYCGDL 177
Query: 324 SMYATLASRDVDCCLIPESPFYLEGPGGLFEFIERQLKENGHMVIVVAEGAGQ 376
++ A + C + + E K H ++ + E
Sbjct: 178 TLAAAI---AGGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAIVAITEHMCD 227
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB
{Staphylococcus aureus [TaxId: 1280]}
Length = 312
Score = 33.8 bits (76), Expect = 0.031
Identities = 23/149 (15%), Positives = 44/149 (29%), Gaps = 9/149 (6%)
Query: 199 PKVVNDIHKRGG--TILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEV 256
P + + K G + T + G T + + + GGDGT E
Sbjct: 23 PDALIKLEKAGYETSAYATEKIGDAT-LEAERAMHENYDVLIAAGGDGTLNEVVNGIAEK 81
Query: 257 EKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLM 316
R + IP ND + ++ V++ + N I
Sbjct: 82 PNR---PKLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKVDIGKMNNRYFINLAA 138
Query: 317 GRYSGFISMYATLASRDVDCCLIPESPFY 345
G G ++ + + + P + +
Sbjct: 139 G---GQLTQVSYETPSKLKSIVGPFAYYI 164
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli
[TaxId: 562]}
Length = 295
Score = 31.5 bits (70), Expect = 0.15
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 5/103 (4%)
Query: 200 KVVNDIHKRGGTI-LRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK 258
+ + + + G TI +R + D + V+ G+ V GGDGT + + E
Sbjct: 19 EAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQCEG 78
Query: 259 RGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHV 301
A+ +P ND A S G A+++A + A
Sbjct: 79 DD-IPALGILPLGTANDFA---TSVGIPEALDKALKLAIAGDA 117
>d2qalc2 d.53.1.1 (C:106-206) Ribosomal protein S3 C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 101
Score = 27.9 bits (62), Expect = 0.78
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 113 VAQNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGG 154
VA +I Q + R V FRRA R + V G
Sbjct: 10 VADSITSQLE--RRVMFRRAMKRAVQNAMRLGAKGIKVEVSG 49
>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 224
Score = 27.5 bits (60), Expect = 2.8
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 352 LFEFIERQLKENGHMVIVVAEGAGQEFV 379
L QLKE G M++ + G Q+
Sbjct: 147 LLCKPYEQLKEGGIMILPIGVGRVQKLY 174
>d2uubc2 d.53.1.1 (C:107-207) Ribosomal protein S3 C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 101
Score = 26.3 bits (58), Expect = 2.9
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 113 VAQNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGG 154
VAQ + Q + R RRA + + V G
Sbjct: 10 VAQRVAEQIE--RRFAVRRAIKQAVQRVMESGAKGAKVIVSG 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.401
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,544,008
Number of extensions: 75887
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 11
Length of query: 413
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,199,356
Effective search space: 389790700
Effective search space used: 389790700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)