Query 015096
Match_columns 413
No_of_seqs 344 out of 2527
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:03:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015096.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015096hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2825 Putative arsenite-tran 100.0 2.1E-54 4.5E-59 389.0 28.2 313 79-413 9-323 (323)
2 PF02374 ArsA_ATPase: Anion-tr 100.0 3.5E-54 7.6E-59 416.8 29.1 303 90-413 2-305 (305)
3 COG0003 ArsA Predicted ATPase 100.0 3.1E-47 6.7E-52 367.0 30.8 301 89-413 2-304 (322)
4 cd00550 ArsA_ATPase Oxyanion-t 100.0 3.8E-42 8.3E-47 325.8 26.9 252 91-408 2-253 (254)
5 TIGR00345 arsA arsenite-activa 100.0 7.4E-40 1.6E-44 314.8 31.2 284 105-411 1-284 (284)
6 cd02035 ArsA ArsA ATPase funct 100.0 2E-27 4.3E-32 220.2 21.4 213 91-389 1-215 (217)
7 KOG3022 Predicted ATPase, nucl 99.9 2.2E-27 4.8E-32 218.1 9.2 224 82-400 41-278 (300)
8 COG0489 Mrp ATPases involved i 99.9 4.1E-26 8.8E-31 216.8 14.5 176 87-355 56-232 (265)
9 TIGR03029 EpsG chain length de 99.9 5.8E-25 1.3E-29 210.9 12.8 191 68-351 78-274 (274)
10 PRK11670 antiporter inner memb 99.9 6.6E-25 1.4E-29 217.9 10.7 178 85-355 104-282 (369)
11 cd02037 MRP-like MRP (Multiple 99.9 4.4E-24 9.5E-29 190.1 11.2 165 90-393 1-167 (169)
12 TIGR01007 eps_fam capsular exo 99.9 1.1E-23 2.3E-28 193.4 13.9 177 87-356 16-194 (204)
13 CHL00175 minD septum-site dete 99.9 3.8E-24 8.2E-29 206.0 10.3 233 87-411 14-252 (281)
14 COG0455 flhG Antiactivator of 99.9 1.7E-23 3.8E-28 197.4 14.2 229 88-411 2-238 (262)
15 PRK11519 tyrosine kinase; Prov 99.9 1.2E-23 2.5E-28 226.4 14.3 194 69-355 502-701 (719)
16 TIGR01969 minD_arch cell divis 99.9 1E-23 2.2E-28 199.2 9.4 172 89-355 1-173 (251)
17 TIGR01005 eps_transp_fam exopo 99.9 4.2E-23 9E-28 224.1 15.1 194 69-355 522-721 (754)
18 COG2894 MinD Septum formation 99.9 1.7E-23 3.7E-28 186.2 9.2 203 88-382 2-215 (272)
19 TIGR03018 pepcterm_TyrKin exop 99.9 1.3E-22 2.7E-27 186.7 13.4 171 86-350 33-207 (207)
20 TIGR03371 cellulose_yhjQ cellu 99.9 2E-22 4.4E-27 189.9 14.4 52 88-139 1-52 (246)
21 PRK09841 cryptic autophosphory 99.9 1.1E-22 2.3E-27 219.1 12.5 195 68-355 506-706 (726)
22 TIGR01281 DPOR_bchL light-inde 99.9 3.7E-23 8.1E-28 197.7 7.5 47 90-137 2-48 (268)
23 PRK13236 nitrogenase reductase 99.9 1.3E-22 2.9E-27 196.4 11.2 239 86-412 4-251 (296)
24 cd02032 Bchl_like This family 99.9 9.1E-23 2E-27 195.0 9.5 48 89-137 1-48 (267)
25 TIGR01968 minD_bact septum sit 99.9 1.2E-22 2.7E-27 192.8 10.0 175 88-355 1-176 (261)
26 PRK13232 nifH nitrogenase redu 99.9 6.4E-23 1.4E-27 196.7 8.0 238 88-412 1-245 (273)
27 PRK13185 chlL protochlorophyll 99.9 2.1E-22 4.7E-27 192.7 11.0 48 89-137 3-50 (270)
28 PRK13869 plasmid-partitioning 99.9 1.1E-21 2.3E-26 197.5 16.2 196 87-356 120-328 (405)
29 PRK10037 cell division protein 99.9 6E-22 1.3E-26 187.5 11.7 52 88-139 1-52 (250)
30 PRK13235 nifH nitrogenase redu 99.9 2.4E-22 5.1E-27 192.8 8.7 47 88-135 1-47 (274)
31 PRK13233 nifH nitrogenase redu 99.9 2.4E-22 5.2E-27 192.9 7.9 235 88-412 2-248 (275)
32 PHA02518 ParA-like protein; Pr 99.9 2.6E-21 5.6E-26 177.9 13.5 50 89-138 1-50 (211)
33 PRK10818 cell division inhibit 99.9 6.6E-22 1.4E-26 189.3 9.6 52 88-139 2-54 (270)
34 cd02117 NifH_like This family 99.9 4.7E-21 1E-25 177.0 14.3 46 89-135 1-46 (212)
35 cd02040 NifH NifH gene encodes 99.9 1.3E-21 2.8E-26 187.0 10.7 49 88-137 1-49 (270)
36 TIGR03453 partition_RepA plasm 99.9 8.1E-21 1.8E-25 190.8 16.9 54 86-139 102-155 (387)
37 PRK13230 nitrogenase reductase 99.9 6.5E-22 1.4E-26 190.3 7.6 49 88-137 1-49 (279)
38 CHL00072 chlL photochlorophyll 99.9 7.8E-22 1.7E-26 190.3 8.1 230 91-411 3-243 (290)
39 cd03110 Fer4_NifH_child This p 99.8 1.5E-20 3.3E-25 168.8 12.7 154 90-355 1-156 (179)
40 PRK13234 nifH nitrogenase redu 99.8 1.1E-21 2.5E-26 189.8 5.7 238 87-412 3-249 (295)
41 COG1192 Soj ATPases involved i 99.8 3.7E-20 8E-25 176.1 15.2 52 88-139 2-54 (259)
42 TIGR03815 CpaE_hom_Actino heli 99.8 7.5E-21 1.6E-25 186.6 10.4 175 87-355 92-268 (322)
43 PHA02519 plasmid partition pro 99.8 6.4E-20 1.4E-24 183.2 15.3 194 87-355 105-307 (387)
44 PRK13705 plasmid-partitioning 99.8 1.1E-19 2.4E-24 181.9 16.4 194 87-355 105-307 (388)
45 TIGR01287 nifH nitrogenase iro 99.8 1.2E-20 2.6E-25 181.1 9.1 47 89-136 1-47 (275)
46 PRK13231 nitrogenase reductase 99.8 9.1E-21 2E-25 180.9 7.2 47 88-136 2-48 (264)
47 cd02036 MinD Bacterial cell di 99.8 2.1E-20 4.5E-25 167.2 8.5 49 90-138 1-50 (179)
48 COG3640 CooC CO dehydrogenase 99.8 1.2E-19 2.6E-24 164.0 11.7 241 92-411 3-250 (255)
49 PRK13849 putative crown gall t 99.8 1.6E-19 3.6E-24 168.4 12.9 51 88-138 1-51 (231)
50 TIGR02016 BchX chlorophyllide 99.8 5.2E-20 1.1E-24 178.0 9.8 47 89-136 1-48 (296)
51 cd02033 BchX Chlorophyllide re 99.8 8.2E-20 1.8E-24 177.8 11.2 52 87-139 30-82 (329)
52 PF06564 YhjQ: YhjQ protein; 99.8 7E-19 1.5E-23 163.2 12.5 222 88-402 1-224 (243)
53 PF01656 CbiA: CobQ/CobB/MinD/ 99.8 2.8E-18 6E-23 155.5 12.3 157 91-355 1-161 (195)
54 COG1149 MinD superfamily P-loo 99.8 1E-18 2.2E-23 161.2 8.5 78 314-395 187-264 (284)
55 cd03111 CpaE_like This protein 99.7 6.3E-17 1.4E-21 132.8 11.3 39 90-128 1-40 (106)
56 cd02038 FleN-like FleN is a me 99.7 1.8E-16 3.9E-21 136.6 11.5 39 90-128 1-39 (139)
57 PF07015 VirC1: VirC1 protein; 99.7 1.6E-15 3.5E-20 138.8 16.7 51 88-138 1-51 (231)
58 cd02042 ParA ParA and ParB of 99.6 3.1E-15 6.8E-20 122.0 11.6 39 90-128 1-39 (104)
59 PF09140 MipZ: ATPase MipZ; I 99.6 1.7E-16 3.7E-21 145.8 4.4 50 89-138 1-51 (261)
60 PF00142 Fer4_NifH: 4Fe-4S iro 99.6 3.4E-15 7.4E-20 138.5 6.3 49 89-138 1-50 (273)
61 PF13614 AAA_31: AAA domain; P 99.5 1.2E-14 2.7E-19 127.2 5.4 52 89-140 1-53 (157)
62 COG1348 NifH Nitrogenase subun 99.4 3.4E-13 7.3E-18 121.8 9.5 48 88-136 1-49 (278)
63 COG4963 CpaE Flp pilus assembl 99.4 4.9E-12 1.1E-16 122.8 14.7 183 86-359 102-288 (366)
64 TIGR00064 ftsY signal recognit 99.4 1.4E-11 2.9E-16 117.9 16.4 42 87-129 71-112 (272)
65 cd03114 ArgK-like The function 99.3 2.1E-11 4.6E-16 106.0 11.7 45 92-136 2-48 (148)
66 cd03115 SRP The signal recogni 99.3 1.3E-10 2.7E-15 103.7 16.1 46 91-136 2-48 (173)
67 PRK13886 conjugal transfer pro 99.3 1.3E-10 2.9E-15 108.1 15.8 47 88-134 2-49 (241)
68 PRK10867 signal recognition pa 99.2 1.9E-10 4E-15 116.2 16.3 41 89-129 100-141 (433)
69 cd02034 CooC The accessory pro 99.2 2.1E-11 4.6E-16 101.5 7.6 46 92-138 2-47 (116)
70 TIGR00347 bioD dethiobiotin sy 99.2 4.7E-11 1E-15 105.8 9.9 36 315-350 131-166 (166)
71 TIGR00959 ffh signal recogniti 99.2 1.6E-10 3.5E-15 116.6 13.9 42 88-129 98-140 (428)
72 PRK13768 GTPase; Provisional 99.2 1.5E-09 3.3E-14 102.8 18.5 41 89-129 2-42 (253)
73 PRK10416 signal recognition pa 99.2 3.7E-10 8E-15 110.2 13.8 41 88-129 114-154 (318)
74 cd01983 Fer4_NifH The Fer4_Nif 99.1 4.2E-10 9.1E-15 89.4 8.8 33 92-124 2-34 (99)
75 TIGR01425 SRP54_euk signal rec 99.1 2.9E-09 6.3E-14 107.1 15.4 41 89-129 100-140 (429)
76 PRK00771 signal recognition pa 99.1 2.4E-09 5.2E-14 108.4 14.7 41 89-129 95-135 (437)
77 PF10609 ParA: ParA/MinD ATPas 99.0 3.1E-10 6.7E-15 86.9 3.6 48 314-365 26-73 (81)
78 PRK11889 flhF flagellar biosyn 98.9 1.6E-08 3.5E-13 99.8 14.0 40 89-129 242-281 (436)
79 PRK12726 flagellar biosynthesi 98.9 3.1E-08 6.8E-13 97.5 14.5 41 88-129 206-246 (407)
80 PRK00090 bioD dithiobiotin syn 98.9 1.5E-08 3.3E-13 94.0 11.4 41 315-355 135-175 (222)
81 PRK14974 cell division protein 98.9 2.7E-08 5.9E-13 97.5 12.5 41 89-129 140-180 (336)
82 PRK12724 flagellar biosynthesi 98.8 9E-08 1.9E-12 95.7 13.3 42 89-130 223-265 (432)
83 PRK12727 flagellar biosynthesi 98.8 2.1E-07 4.6E-12 95.3 16.1 41 88-129 350-392 (559)
84 PRK05703 flhF flagellar biosyn 98.7 1.7E-07 3.7E-12 95.1 13.8 40 89-129 222-263 (424)
85 PF00448 SRP54: SRP54-type pro 98.7 2.5E-07 5.4E-12 84.3 11.6 39 91-129 3-41 (196)
86 COG0541 Ffh Signal recognition 98.6 5.9E-07 1.3E-11 89.0 13.1 42 88-129 99-140 (451)
87 TIGR00750 lao LAO/AO transport 98.6 4.2E-07 9.1E-12 88.4 11.6 41 88-129 34-74 (300)
88 PRK12723 flagellar biosynthesi 98.6 1.2E-06 2.5E-11 87.7 14.5 41 89-129 174-218 (388)
89 PRK01077 cobyrinic acid a,c-di 98.6 1E-06 2.2E-11 90.5 14.4 40 88-127 3-42 (451)
90 COG0132 BioD Dethiobiotin synt 98.4 8.2E-06 1.8E-10 75.2 14.6 42 315-356 138-179 (223)
91 PRK09435 membrane ATPase/prote 98.4 8.8E-06 1.9E-10 79.8 14.9 40 90-129 57-96 (332)
92 cd03109 DTBS Dethiobiotin synt 98.4 5.2E-06 1.1E-10 70.9 11.8 41 315-355 70-110 (134)
93 PRK05632 phosphate acetyltrans 98.4 9.1E-07 2E-11 95.3 8.7 37 88-124 2-38 (684)
94 PRK06731 flhF flagellar biosyn 98.4 6.6E-06 1.4E-10 78.5 13.5 40 89-129 76-115 (270)
95 TIGR03499 FlhF flagellar biosy 98.3 1.6E-06 3.6E-11 83.5 8.6 40 89-129 195-236 (282)
96 COG0552 FtsY Signal recognitio 98.3 2.5E-05 5.5E-10 75.3 16.5 39 89-127 139-177 (340)
97 PF13500 AAA_26: AAA domain; P 98.3 1.7E-06 3.7E-11 78.9 8.3 41 315-355 131-171 (199)
98 COG1703 ArgK Putative periplas 98.2 0.00017 3.7E-09 68.5 19.2 52 86-138 49-102 (323)
99 COG1797 CobB Cobyrinic acid a, 98.2 1.2E-05 2.6E-10 79.8 11.7 34 90-123 2-35 (451)
100 PRK14723 flhF flagellar biosyn 98.2 2.4E-05 5.2E-10 83.9 14.2 40 90-129 186-227 (767)
101 KOG1532 GTPase XAB1, interacts 98.1 5.5E-05 1.2E-09 70.7 13.7 45 88-132 18-63 (366)
102 PRK12374 putative dithiobiotin 98.1 1.8E-05 4E-10 73.9 10.5 41 315-355 137-177 (231)
103 KOG0780 Signal recognition par 98.1 5.9E-05 1.3E-09 73.6 13.1 50 88-137 100-150 (483)
104 PRK14722 flhF flagellar biosyn 98.1 7.8E-05 1.7E-09 74.2 13.9 40 90-129 138-179 (374)
105 PRK00784 cobyric acid synthase 98.0 7.2E-05 1.6E-09 77.7 14.1 37 88-124 2-38 (488)
106 PF03029 ATP_bind_1: Conserved 98.0 0.00015 3.2E-09 68.1 13.4 39 95-133 2-41 (238)
107 PRK13505 formate--tetrahydrofo 97.9 9.7E-06 2.1E-10 83.0 5.2 51 87-140 54-108 (557)
108 TIGR00379 cobB cobyrinic acid 97.9 5.5E-05 1.2E-09 77.7 10.5 34 91-124 2-35 (449)
109 TIGR00313 cobQ cobyric acid sy 97.9 0.0006 1.3E-08 70.5 18.0 35 91-125 1-35 (475)
110 PRK06995 flhF flagellar biosyn 97.9 0.00015 3.3E-09 74.4 12.5 40 90-129 257-298 (484)
111 PF03308 ArgK: ArgK protein; 97.9 0.00066 1.4E-08 63.7 15.2 50 87-137 28-79 (266)
112 cd00477 FTHFS Formyltetrahydro 97.8 1.8E-05 3.8E-10 80.2 5.0 51 87-140 37-91 (524)
113 PHA02542 41 41 helicase; Provi 97.8 0.00017 3.8E-09 74.2 12.2 63 74-136 173-238 (473)
114 COG1419 FlhF Flagellar GTP-bin 97.7 0.00047 1E-08 68.5 13.2 41 89-129 203-245 (407)
115 PRK13506 formate--tetrahydrofo 97.7 3.1E-05 6.7E-10 79.2 4.9 51 87-140 53-107 (578)
116 PRK13896 cobyrinic acid a,c-di 97.7 0.0003 6.4E-09 71.5 11.3 37 88-124 1-37 (433)
117 KOG0781 Signal recognition par 97.6 0.0018 3.9E-08 65.1 14.5 41 89-129 378-418 (587)
118 PRK14493 putative bifunctional 97.5 0.00013 2.9E-09 69.8 5.5 40 88-129 1-40 (274)
119 KOG1534 Putative transcription 97.5 0.0048 1E-07 55.9 14.1 41 89-129 3-43 (273)
120 KOG1533 Predicted GTPase [Gene 97.4 0.00058 1.2E-08 62.7 8.3 43 93-135 6-49 (290)
121 cd01394 radB RadB. The archaea 97.4 0.00023 5E-09 65.7 6.0 53 76-128 4-58 (218)
122 PRK06278 cobyrinic acid a,c-di 97.4 0.0023 5E-08 65.8 13.7 41 315-355 352-396 (476)
123 PRK09361 radB DNA repair and r 97.3 0.00054 1.2E-08 63.6 6.2 51 76-126 8-60 (225)
124 PRK06526 transposase; Provisio 97.2 0.0003 6.5E-09 66.7 4.4 86 26-125 49-134 (254)
125 PF01583 APS_kinase: Adenylyls 97.2 0.00047 1E-08 60.2 4.9 44 90-133 3-47 (156)
126 PRK08181 transposase; Validate 97.2 0.00055 1.2E-08 65.4 5.6 87 26-125 56-142 (269)
127 COG0529 CysC Adenylylsulfate k 97.1 0.00065 1.4E-08 59.9 4.8 49 90-138 24-73 (197)
128 PRK07667 uridine kinase; Provi 97.1 0.00086 1.9E-08 60.9 5.9 40 89-128 17-56 (193)
129 PRK00889 adenylylsulfate kinas 97.1 0.0008 1.7E-08 59.8 5.5 39 90-128 5-43 (175)
130 COG1484 DnaC DNA replication p 97.1 0.00074 1.6E-08 64.0 5.5 87 26-125 55-141 (254)
131 PRK09183 transposase/IS protei 97.1 0.0013 2.8E-08 62.6 6.7 86 26-125 53-138 (259)
132 COG1341 Predicted GTPase or GT 97.1 0.0035 7.7E-08 62.1 9.8 39 89-128 74-112 (398)
133 PRK07952 DNA replication prote 97.0 0.00076 1.6E-08 63.5 4.6 36 90-125 100-135 (244)
134 COG3598 RepA RecA-family ATPas 97.0 0.022 4.7E-07 54.9 14.1 26 90-115 90-115 (402)
135 PRK05595 replicative DNA helic 96.9 0.004 8.7E-08 64.0 9.4 60 75-134 186-248 (444)
136 PF03205 MobB: Molybdopterin g 96.9 0.002 4.4E-08 55.3 6.0 37 90-127 2-39 (140)
137 TIGR01618 phage_P_loop phage n 96.9 0.002 4.3E-08 59.6 6.3 31 90-127 13-43 (220)
138 cd01124 KaiC KaiC is a circadi 96.9 0.0012 2.7E-08 58.9 4.8 37 92-128 2-38 (187)
139 TIGR02237 recomb_radB DNA repa 96.9 0.002 4.4E-08 58.9 6.0 38 89-126 12-49 (209)
140 PRK06696 uridine kinase; Valid 96.9 0.0017 3.6E-08 60.4 5.5 41 88-128 21-61 (223)
141 PRK03846 adenylylsulfate kinas 96.8 0.0019 4.2E-08 58.8 5.5 41 89-129 24-64 (198)
142 PRK05973 replicative DNA helic 96.8 0.0017 3.7E-08 60.8 5.0 40 89-128 64-103 (237)
143 PLN02974 adenosylmethionine-8- 96.8 0.04 8.7E-07 60.6 16.2 68 315-400 216-283 (817)
144 TIGR03574 selen_PSTK L-seryl-t 96.8 0.0013 2.8E-08 62.1 4.2 37 91-127 1-37 (249)
145 cd01120 RecA-like_NTPases RecA 96.8 0.0016 3.6E-08 56.1 4.5 38 92-129 2-39 (165)
146 PRK14721 flhF flagellar biosyn 96.7 0.025 5.4E-07 57.4 13.1 38 91-128 193-232 (420)
147 TIGR03878 thermo_KaiC_2 KaiC d 96.7 0.0025 5.4E-08 60.6 5.5 40 88-127 35-74 (259)
148 PF13245 AAA_19: Part of AAA d 96.7 0.003 6.4E-08 48.3 4.6 38 89-126 10-51 (76)
149 cd02027 APSK Adenosine 5'-phos 96.7 0.0021 4.6E-08 55.8 4.3 38 92-129 2-39 (149)
150 cd02028 UMPK_like Uridine mono 96.7 0.0022 4.9E-08 57.4 4.6 38 91-128 1-38 (179)
151 PRK06762 hypothetical protein; 96.6 0.0024 5.1E-08 56.2 4.4 36 89-127 2-37 (166)
152 cd01122 GP4d_helicase GP4d_hel 96.6 0.0023 5.1E-08 61.0 4.7 52 77-128 17-70 (271)
153 COG0467 RAD55 RecA-superfamily 96.6 0.0042 9.2E-08 59.0 6.3 59 76-134 8-69 (260)
154 PF13207 AAA_17: AAA domain; P 96.6 0.0021 4.6E-08 53.2 3.7 31 91-124 1-31 (121)
155 PRK06067 flagellar accessory p 96.5 0.004 8.7E-08 58.1 5.6 52 76-127 10-63 (234)
156 PF13481 AAA_25: AAA domain; P 96.5 0.0034 7.5E-08 56.4 4.6 47 89-135 32-89 (193)
157 PHA00729 NTP-binding motif con 96.5 0.0043 9.3E-08 57.5 5.2 25 90-114 18-42 (226)
158 cd00984 DnaB_C DnaB helicase C 96.5 0.0052 1.1E-07 57.5 5.9 41 89-129 13-54 (242)
159 PF03796 DnaB_C: DnaB-like hel 96.5 0.004 8.8E-08 59.1 5.2 54 76-129 5-60 (259)
160 TIGR00176 mobB molybdopterin-g 96.4 0.0041 8.9E-08 54.4 4.6 36 92-127 2-37 (155)
161 PF01695 IstB_IS21: IstB-like 96.4 0.0031 6.7E-08 56.5 3.9 34 92-125 50-83 (178)
162 PRK14494 putative molybdopteri 96.4 0.0044 9.6E-08 57.6 5.0 37 88-125 1-37 (229)
163 cd03113 CTGs CTP synthetase (C 96.4 0.035 7.7E-07 51.7 10.8 39 90-128 2-41 (255)
164 KOG0635 Adenosine 5'-phosphosu 96.4 0.0062 1.4E-07 52.2 5.3 55 83-138 26-81 (207)
165 PF06745 KaiC: KaiC; InterPro 96.4 0.0044 9.4E-08 57.5 4.7 53 76-128 4-59 (226)
166 COG4088 Predicted nucleotide k 96.4 0.0031 6.6E-08 57.1 3.4 40 90-129 2-41 (261)
167 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.0068 1.5E-07 56.8 5.8 53 76-128 6-60 (237)
168 TIGR03600 phage_DnaB phage rep 96.3 0.0062 1.3E-07 62.1 6.0 56 74-129 178-235 (421)
169 TIGR03880 KaiC_arch_3 KaiC dom 96.3 0.0083 1.8E-07 55.6 6.1 51 78-128 3-55 (224)
170 TIGR03881 KaiC_arch_4 KaiC dom 96.3 0.0077 1.7E-07 55.9 5.8 52 77-128 6-59 (229)
171 PF13479 AAA_24: AAA domain 96.2 0.014 3E-07 53.8 7.2 31 90-128 4-34 (213)
172 TIGR03575 selen_PSTK_euk L-ser 96.2 0.0049 1.1E-07 60.8 4.2 37 91-127 1-38 (340)
173 PRK05541 adenylylsulfate kinas 96.2 0.0075 1.6E-07 53.6 5.1 39 89-127 7-45 (176)
174 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.0072 1.6E-07 53.0 4.7 35 90-125 4-38 (159)
175 TIGR02012 tigrfam_recA protein 96.2 0.0089 1.9E-07 58.5 5.7 51 76-126 39-92 (321)
176 PRK12377 putative replication 96.1 0.0073 1.6E-07 57.0 4.8 36 90-125 102-137 (248)
177 TIGR00455 apsK adenylylsulfate 96.1 0.01 2.2E-07 53.2 5.4 40 89-128 18-57 (184)
178 cd03116 MobB Molybdenum is an 96.1 0.012 2.6E-07 51.7 5.7 39 89-128 2-40 (159)
179 PRK08506 replicative DNA helic 96.0 0.01 2.2E-07 61.5 5.6 60 75-134 177-238 (472)
180 cd00983 recA RecA is a bacter 96.0 0.012 2.7E-07 57.5 5.7 52 75-126 38-92 (325)
181 PRK08533 flagellar accessory p 96.0 0.013 2.7E-07 54.8 5.5 40 89-128 24-63 (230)
182 cd02019 NK Nucleoside/nucleoti 96.0 0.012 2.6E-07 43.9 4.4 32 92-125 2-33 (69)
183 smart00382 AAA ATPases associa 96.0 0.006 1.3E-07 50.5 3.1 38 91-128 4-41 (148)
184 PRK04328 hypothetical protein; 95.9 0.014 3E-07 55.2 5.8 53 76-128 8-62 (249)
185 TIGR03420 DnaA_homol_Hda DnaA 95.9 0.011 2.4E-07 54.6 5.0 39 89-127 38-76 (226)
186 PRK05480 uridine/cytidine kina 95.9 0.014 3E-07 53.5 5.4 38 89-128 6-43 (209)
187 PRK06749 replicative DNA helic 95.9 0.012 2.6E-07 60.1 5.4 54 76-129 172-226 (428)
188 PRK08760 replicative DNA helic 95.9 0.011 2.5E-07 61.1 5.3 59 75-133 214-275 (476)
189 TIGR00708 cobA cob(I)alamin ad 95.8 0.012 2.7E-07 52.2 4.6 35 90-125 7-41 (173)
190 PRK11823 DNA repair protein Ra 95.8 0.014 3.1E-07 59.9 5.8 52 76-127 65-118 (446)
191 cd01121 Sms Sms (bacterial rad 95.8 0.015 3.3E-07 58.1 5.7 52 75-126 66-119 (372)
192 TIGR00665 DnaB replicative DNA 95.8 0.015 3.3E-07 59.5 5.9 55 75-129 180-236 (434)
193 cd04170 EF-G_bact Elongation f 95.8 0.045 9.7E-07 52.2 8.8 41 314-355 89-129 (268)
194 TIGR00416 sms DNA repair prote 95.8 0.015 3.1E-07 59.9 5.7 53 75-127 78-132 (454)
195 TIGR02655 circ_KaiC circadian 95.8 0.014 3E-07 60.7 5.6 54 75-128 247-302 (484)
196 PRK08006 replicative DNA helic 95.8 0.014 3E-07 60.4 5.4 60 74-133 208-270 (471)
197 PRK04296 thymidine kinase; Pro 95.8 0.017 3.8E-07 52.2 5.4 35 90-124 3-37 (190)
198 PRK15453 phosphoribulokinase; 95.7 0.017 3.6E-07 55.3 5.4 40 90-129 6-45 (290)
199 COG1066 Sms Predicted ATP-depe 95.7 0.024 5.2E-07 56.5 6.6 49 77-126 79-129 (456)
200 PRK06321 replicative DNA helic 95.7 0.015 3.2E-07 60.1 5.4 61 74-134 210-273 (472)
201 cd01125 repA Hexameric Replica 95.7 0.015 3.3E-07 54.4 4.8 38 90-127 2-51 (239)
202 PRK08840 replicative DNA helic 95.6 0.016 3.5E-07 59.7 5.4 56 74-129 201-258 (464)
203 PRK05439 pantothenate kinase; 95.6 0.02 4.4E-07 55.7 5.7 42 88-129 85-128 (311)
204 cd02029 PRK_like Phosphoribulo 95.6 0.016 3.4E-07 55.1 4.8 38 93-130 3-40 (277)
205 PRK08939 primosomal protein Dn 95.6 0.015 3.2E-07 56.8 4.7 35 91-125 158-192 (306)
206 PRK00089 era GTPase Era; Revie 95.6 0.12 2.5E-06 50.0 11.0 40 314-354 86-125 (292)
207 PF08433 KTI12: Chromatin asso 95.6 0.014 2.9E-07 55.9 4.4 36 91-126 3-38 (270)
208 PRK05748 replicative DNA helic 95.6 0.016 3.6E-07 59.5 5.2 62 74-135 187-251 (448)
209 PRK06904 replicative DNA helic 95.6 0.015 3.3E-07 60.1 4.9 55 75-129 206-262 (472)
210 PRK14495 putative molybdopteri 95.6 0.017 3.7E-07 58.4 5.0 37 88-125 1-37 (452)
211 PRK08233 hypothetical protein; 95.6 0.011 2.4E-07 52.5 3.4 36 90-127 4-39 (182)
212 PRK09354 recA recombinase A; P 95.6 0.022 4.8E-07 56.2 5.7 52 75-126 43-97 (349)
213 PRK06835 DNA replication prote 95.6 0.014 3E-07 57.5 4.2 36 90-125 184-219 (329)
214 cd01884 EF_Tu EF-Tu subfamily. 95.5 1.3 2.9E-05 40.1 16.9 41 314-354 90-130 (195)
215 cd00009 AAA The AAA+ (ATPases 95.5 0.024 5.2E-07 47.4 5.2 38 89-126 19-56 (151)
216 cd01393 recA_like RecA is a b 95.5 0.022 4.8E-07 52.6 5.2 51 77-127 5-63 (226)
217 PRK09165 replicative DNA helic 95.5 0.018 4E-07 59.9 5.1 60 75-134 202-278 (497)
218 PF00485 PRK: Phosphoribulokin 95.5 0.018 3.9E-07 52.2 4.4 38 91-128 1-42 (194)
219 cd04163 Era Era subfamily. Er 95.4 0.19 4.2E-06 42.8 10.7 40 314-354 84-123 (168)
220 cd01123 Rad51_DMC1_radA Rad51_ 95.4 0.021 4.6E-07 53.1 4.9 51 77-127 5-63 (235)
221 PRK08727 hypothetical protein; 95.4 0.019 4.1E-07 53.7 4.4 37 90-126 42-78 (233)
222 COG1110 Reverse gyrase [DNA re 95.4 2.7 5.9E-05 46.7 21.0 36 88-124 97-132 (1187)
223 cd01894 EngA1 EngA1 subfamily. 95.4 0.13 2.7E-06 43.9 9.4 40 314-354 78-117 (157)
224 PRK08084 DNA replication initi 95.4 0.023 4.9E-07 53.2 5.0 38 90-127 46-83 (235)
225 PRK10751 molybdopterin-guanine 95.4 0.029 6.2E-07 49.9 5.3 39 89-127 6-44 (173)
226 cd02023 UMPK Uridine monophosp 95.3 0.02 4.4E-07 51.8 4.4 35 92-128 2-36 (198)
227 cd02025 PanK Pantothenate kina 95.3 0.023 4.9E-07 52.7 4.7 37 92-128 2-40 (220)
228 COG1618 Predicted nucleotide k 95.3 0.02 4.2E-07 50.0 3.7 36 89-125 6-41 (179)
229 PRK08903 DnaA regulatory inact 95.3 0.024 5.3E-07 52.5 4.8 38 90-127 43-80 (227)
230 PRK05642 DNA replication initi 95.2 0.022 4.8E-07 53.3 4.3 37 90-126 46-82 (234)
231 KOG0744 AAA+-type ATPase [Post 95.2 0.45 9.8E-06 46.2 13.0 51 88-138 176-230 (423)
232 PRK00131 aroK shikimate kinase 95.2 0.018 3.9E-07 50.6 3.6 33 89-126 4-36 (175)
233 COG0857 Pta BioD-like N-termin 95.2 0.23 5E-06 49.3 11.5 37 88-124 2-38 (354)
234 PRK07004 replicative DNA helic 95.2 0.027 5.9E-07 58.1 5.1 59 75-133 198-259 (460)
235 PRK06893 DNA replication initi 95.2 0.027 5.7E-07 52.6 4.6 37 90-126 40-76 (229)
236 COG4240 Predicted kinase [Gene 95.2 0.034 7.4E-07 51.1 5.1 40 88-127 49-89 (300)
237 PF13086 AAA_11: AAA domain; P 95.1 0.02 4.4E-07 52.4 3.8 35 91-125 19-61 (236)
238 PF06418 CTP_synth_N: CTP synt 95.1 0.22 4.8E-06 46.9 10.4 40 89-128 2-42 (276)
239 PRK12740 elongation factor G; 95.1 0.12 2.6E-06 56.0 10.1 41 314-355 85-125 (668)
240 COG1102 Cmk Cytidylate kinase 95.1 0.018 3.9E-07 50.2 3.0 24 91-114 2-25 (179)
241 PF13671 AAA_33: AAA domain; P 95.1 0.015 3.3E-07 49.4 2.5 32 91-127 1-32 (143)
242 TIGR00041 DTMP_kinase thymidyl 95.1 0.035 7.5E-07 50.0 5.0 36 90-125 4-39 (195)
243 PRK05636 replicative DNA helic 95.1 0.03 6.5E-07 58.3 5.2 55 75-129 250-306 (505)
244 cd01672 TMPK Thymidine monopho 95.0 0.034 7.5E-07 49.8 4.8 35 91-125 2-36 (200)
245 PRK10490 sensor protein KdpD; 95.0 0.65 1.4E-05 52.1 15.7 43 87-129 22-66 (895)
246 PF05729 NACHT: NACHT domain 95.0 0.024 5.1E-07 49.1 3.5 28 91-118 2-29 (166)
247 TIGR02655 circ_KaiC circadian 94.9 0.04 8.7E-07 57.3 5.7 53 76-128 6-61 (484)
248 PF13604 AAA_30: AAA domain; P 94.9 0.035 7.7E-07 50.4 4.6 37 89-125 18-54 (196)
249 cd02021 GntK Gluconate kinase 94.9 0.023 5E-07 48.9 3.2 33 91-128 1-33 (150)
250 PRK08116 hypothetical protein; 94.9 0.035 7.6E-07 53.1 4.7 36 90-125 115-150 (268)
251 COG2874 FlaH Predicted ATPases 94.9 0.85 1.8E-05 41.8 13.1 40 88-127 27-66 (235)
252 PRK06921 hypothetical protein; 94.9 0.033 7.2E-07 53.2 4.4 36 90-125 118-154 (266)
253 COG0504 PyrG CTP synthase (UTP 94.8 0.2 4.3E-06 51.0 9.9 40 89-128 2-42 (533)
254 cd00881 GTP_translation_factor 94.8 0.14 2.9E-06 45.2 8.1 41 314-355 87-127 (189)
255 PRK09302 circadian clock prote 94.7 0.046 9.9E-07 57.2 5.5 54 75-128 15-71 (509)
256 KOG1805 DNA replication helica 94.7 0.059 1.3E-06 58.7 6.0 37 89-125 685-721 (1100)
257 PRK09270 nucleoside triphospha 94.6 0.056 1.2E-06 50.3 5.3 42 88-129 32-74 (229)
258 COG1159 Era GTPase [General fu 94.5 2.3 5E-05 40.9 15.7 48 305-355 80-127 (298)
259 PHA02530 pseT polynucleotide k 94.5 0.033 7.3E-07 53.8 3.5 36 88-127 1-36 (300)
260 PRK12339 2-phosphoglycerate ki 94.5 0.039 8.4E-07 50.3 3.7 35 89-127 3-37 (197)
261 PRK00093 GTP-binding protein D 94.4 0.34 7.4E-06 49.5 10.9 40 314-354 82-121 (435)
262 PRK08118 topology modulation p 94.4 0.039 8.4E-07 48.8 3.5 24 89-113 2-25 (167)
263 TIGR02640 gas_vesic_GvpN gas v 94.4 0.063 1.4E-06 51.1 5.2 43 93-138 25-67 (262)
264 cd01886 EF-G Elongation factor 94.4 0.14 3E-06 49.0 7.5 41 314-355 89-129 (270)
265 PRK09302 circadian clock prote 94.4 0.065 1.4E-06 56.1 5.6 54 75-128 257-312 (509)
266 PF12846 AAA_10: AAA-like doma 94.4 0.053 1.1E-06 51.9 4.7 34 93-126 5-38 (304)
267 PF13238 AAA_18: AAA domain; P 94.4 0.034 7.4E-07 46.0 2.9 22 92-113 1-22 (129)
268 cd04168 TetM_like Tet(M)-like 94.3 0.46 1E-05 44.5 10.8 41 314-355 89-129 (237)
269 PRK06851 hypothetical protein; 94.3 0.067 1.5E-06 53.3 5.3 40 86-125 211-250 (367)
270 PF07728 AAA_5: AAA domain (dy 94.3 0.068 1.5E-06 45.3 4.7 44 93-139 3-46 (139)
271 cd04169 RF3 RF3 subfamily. Pe 94.3 0.53 1.1E-05 45.0 11.3 40 314-354 96-135 (267)
272 PF06414 Zeta_toxin: Zeta toxi 94.3 0.044 9.6E-07 49.8 3.7 40 87-128 13-52 (199)
273 PRK05506 bifunctional sulfate 94.3 0.06 1.3E-06 57.9 5.3 42 88-129 459-500 (632)
274 TIGR02236 recomb_radA DNA repa 94.3 0.067 1.5E-06 52.2 5.2 50 78-127 82-139 (310)
275 COG2403 Predicted GTPase [Gene 94.3 0.072 1.6E-06 52.3 5.3 45 81-125 119-163 (449)
276 PRK06547 hypothetical protein; 94.3 0.053 1.2E-06 48.2 4.0 35 87-126 13-47 (172)
277 PF13401 AAA_22: AAA domain; P 94.2 0.038 8.3E-07 46.0 2.9 37 89-125 4-45 (131)
278 PRK06217 hypothetical protein; 94.2 0.06 1.3E-06 48.2 4.3 31 92-127 4-34 (183)
279 PF09848 DUF2075: Uncharacteri 94.2 0.057 1.2E-06 53.7 4.5 38 89-126 1-40 (352)
280 PF13173 AAA_14: AAA domain 94.1 0.062 1.3E-06 45.1 4.0 37 90-127 3-39 (128)
281 PRK04220 2-phosphoglycerate ki 94.1 0.087 1.9E-06 51.0 5.3 37 87-127 90-126 (301)
282 PF01926 MMR_HSR1: 50S ribosom 94.1 0.41 8.9E-06 39.0 8.8 37 313-351 80-116 (116)
283 cd02024 NRK1 Nicotinamide ribo 94.0 0.045 9.8E-07 49.4 3.2 33 92-128 2-34 (187)
284 PRK05986 cob(I)alamin adenolsy 94.0 0.083 1.8E-06 47.7 4.8 34 91-125 25-58 (191)
285 PLN02796 D-glycerate 3-kinase 94.0 0.075 1.6E-06 52.4 4.9 39 89-127 100-138 (347)
286 TIGR00554 panK_bact pantothena 94.0 0.096 2.1E-06 50.6 5.5 42 88-129 61-104 (290)
287 PF00004 AAA: ATPase family as 93.9 0.076 1.7E-06 44.0 4.1 30 93-125 2-31 (132)
288 PRK05537 bifunctional sulfate 93.8 0.078 1.7E-06 56.1 5.0 39 90-128 393-432 (568)
289 PRK04301 radA DNA repair and r 93.8 0.083 1.8E-06 51.8 4.8 50 78-127 89-146 (317)
290 PRK06761 hypothetical protein; 93.8 0.063 1.4E-06 51.6 3.9 39 89-127 3-42 (282)
291 PLN03046 D-glycerate 3-kinase; 93.8 0.094 2E-06 52.9 5.1 41 88-128 211-251 (460)
292 TIGR00682 lpxK tetraacyldisacc 93.8 0.086 1.9E-06 51.5 4.8 38 88-125 28-66 (311)
293 TIGR02238 recomb_DMC1 meiotic 93.8 0.098 2.1E-06 51.2 5.2 53 75-127 80-140 (313)
294 PRK13946 shikimate kinase; Pro 93.7 0.068 1.5E-06 47.9 3.8 33 90-127 11-43 (184)
295 TIGR00436 era GTP-binding prot 93.7 0.67 1.5E-05 44.2 10.7 39 314-354 81-119 (270)
296 PRK00652 lpxK tetraacyldisacch 93.6 0.086 1.9E-06 51.8 4.5 38 89-126 50-88 (325)
297 TIGR00235 udk uridine kinase. 93.6 0.089 1.9E-06 48.1 4.4 38 89-128 6-43 (207)
298 PRK07773 replicative DNA helic 93.6 0.085 1.8E-06 58.9 5.0 55 75-129 202-258 (886)
299 PRK07933 thymidylate kinase; V 93.6 0.11 2.4E-06 47.8 5.0 35 91-125 2-36 (213)
300 COG1072 CoaA Panthothenate kin 93.5 0.14 3E-06 48.6 5.5 44 86-129 79-124 (283)
301 PLN03187 meiotic recombination 93.5 0.13 2.7E-06 51.0 5.4 53 74-126 109-169 (344)
302 cd04167 Snu114p Snu114p subfam 93.5 0.2 4.3E-06 45.9 6.5 40 314-354 96-135 (213)
303 PF01935 DUF87: Domain of unkn 93.5 0.12 2.7E-06 47.8 5.1 37 89-126 24-61 (229)
304 PF03266 NTPase_1: NTPase; In 93.4 0.082 1.8E-06 46.8 3.7 31 92-122 2-32 (168)
305 COG1763 MobB Molybdopterin-gua 93.4 0.11 2.4E-06 45.6 4.4 40 88-128 2-41 (161)
306 TIGR01313 therm_gnt_kin carboh 93.3 0.068 1.5E-06 46.7 3.0 31 93-128 2-32 (163)
307 TIGR00376 DNA helicase, putati 93.3 0.1 2.3E-06 56.0 4.9 35 90-124 174-208 (637)
308 PRK07261 topology modulation p 93.3 0.1 2.2E-06 46.3 4.1 20 94-113 5-24 (171)
309 PRK09519 recA DNA recombinatio 93.3 0.14 3E-06 55.8 5.7 64 75-138 43-111 (790)
310 PTZ00301 uridine kinase; Provi 93.1 0.17 3.6E-06 46.6 5.3 39 90-128 4-44 (210)
311 PRK12338 hypothetical protein; 93.1 0.097 2.1E-06 51.1 3.9 36 89-128 4-39 (319)
312 PF02562 PhoH: PhoH-like prote 93.1 0.13 2.8E-06 47.1 4.4 35 89-123 19-55 (205)
313 PRK00698 tmk thymidylate kinas 92.9 0.19 4.2E-06 45.4 5.4 35 90-124 4-38 (205)
314 cd02020 CMPK Cytidine monophos 92.8 0.084 1.8E-06 44.8 2.8 31 91-126 1-31 (147)
315 PF00154 RecA: recA bacterial 92.8 0.59 1.3E-05 45.8 8.8 41 87-128 52-92 (322)
316 PF00931 NB-ARC: NB-ARC domain 92.8 0.12 2.5E-06 49.4 4.0 42 87-128 17-60 (287)
317 PRK13947 shikimate kinase; Pro 92.7 0.14 3.1E-06 44.9 4.2 31 92-127 4-34 (171)
318 PRK03839 putative kinase; Prov 92.7 0.12 2.6E-06 46.0 3.7 30 92-126 3-32 (180)
319 PLN02327 CTP synthase 92.6 0.99 2.2E-05 47.2 10.6 40 89-128 2-42 (557)
320 COG1936 Predicted nucleotide k 92.6 0.13 2.7E-06 45.5 3.5 26 92-121 3-28 (180)
321 PLN03186 DNA repair protein RA 92.6 0.19 4.2E-06 49.7 5.3 53 75-127 107-167 (342)
322 PTZ00035 Rad51 protein; Provis 92.6 0.18 3.9E-06 49.9 5.1 53 75-127 102-162 (337)
323 PRK07414 cob(I)yrinic acid a,c 92.6 0.21 4.6E-06 44.5 5.0 40 84-125 18-57 (178)
324 PLN02924 thymidylate kinase 92.5 0.22 4.8E-06 46.2 5.3 36 89-124 16-51 (220)
325 PRK04040 adenylate kinase; Pro 92.4 0.13 2.7E-06 46.5 3.5 25 90-114 3-27 (188)
326 PRK06851 hypothetical protein; 92.4 0.25 5.3E-06 49.3 5.7 41 87-127 28-70 (367)
327 PRK01906 tetraacyldisaccharide 92.4 0.13 2.9E-06 50.7 3.8 38 89-126 57-95 (338)
328 cd00046 DEXDc DEAD-like helica 92.4 0.22 4.7E-06 41.0 4.7 33 92-124 3-37 (144)
329 PRK09866 hypothetical protein; 92.4 1.4 3.1E-05 47.0 11.4 41 314-354 260-301 (741)
330 PRK15494 era GTPase Era; Provi 92.4 1.3 2.9E-05 43.8 10.9 40 314-354 133-172 (339)
331 PF13191 AAA_16: AAA ATPase do 92.3 0.19 4E-06 44.4 4.4 42 88-129 23-64 (185)
332 PRK05380 pyrG CTP synthetase; 92.3 0.89 1.9E-05 47.3 9.8 41 88-128 2-43 (533)
333 COG0572 Udk Uridine kinase [Nu 92.2 0.18 3.9E-06 46.4 4.2 37 90-128 9-45 (218)
334 PRK13948 shikimate kinase; Pro 92.2 0.19 4.2E-06 45.1 4.3 34 89-127 10-43 (182)
335 COG0305 DnaB Replicative DNA h 92.2 0.26 5.6E-06 50.1 5.6 55 75-129 181-237 (435)
336 TIGR00337 PyrG CTP synthase. C 92.2 1.2 2.5E-05 46.4 10.5 40 89-128 2-42 (525)
337 PRK13973 thymidylate kinase; P 92.2 0.24 5.1E-06 45.6 5.0 35 90-124 4-38 (213)
338 cd04165 GTPBP1_like GTPBP1-lik 92.1 2.7 5.9E-05 38.9 12.1 40 314-354 111-150 (224)
339 TIGR02880 cbbX_cfxQ probable R 92.1 0.17 3.6E-06 48.9 4.1 34 92-125 61-98 (284)
340 PRK00049 elongation factor Tu; 92.1 5.1 0.00011 40.6 14.9 41 314-354 100-140 (396)
341 PF00910 RNA_helicase: RNA hel 92.0 0.14 2.9E-06 41.7 2.9 24 93-116 2-25 (107)
342 cd00227 CPT Chloramphenicol (C 92.0 0.14 3.1E-06 45.4 3.3 34 90-126 3-36 (175)
343 COG2074 2-phosphoglycerate kin 91.9 0.17 3.6E-06 47.4 3.6 37 87-127 87-123 (299)
344 PF02606 LpxK: Tetraacyldisacc 91.8 0.15 3.2E-06 50.2 3.5 38 88-125 35-73 (326)
345 PRK03731 aroL shikimate kinase 91.8 0.18 4E-06 44.3 3.7 31 92-127 5-35 (171)
346 CHL00181 cbbX CbbX; Provisiona 91.7 0.19 4.2E-06 48.5 4.1 27 92-118 62-88 (287)
347 cd01131 PilT Pilus retraction 91.6 0.32 6.9E-06 44.2 5.2 34 91-124 3-37 (198)
348 PRK14489 putative bifunctional 91.5 0.26 5.6E-06 49.4 4.9 40 88-128 205-244 (366)
349 PRK12422 chromosomal replicati 91.5 0.21 4.5E-06 51.4 4.2 35 92-126 144-178 (445)
350 PLN02200 adenylate kinase fami 91.5 0.2 4.2E-06 46.9 3.7 25 89-113 43-67 (234)
351 TIGR00073 hypB hydrogenase acc 91.4 0.42 9.1E-06 43.6 5.8 44 84-128 17-60 (207)
352 COG1160 Predicted GTPases [Gen 91.3 1.5 3.3E-05 44.5 10.0 41 314-355 85-125 (444)
353 TIGR01359 UMP_CMP_kin_fam UMP- 91.3 0.15 3.2E-06 45.4 2.6 29 92-125 2-30 (183)
354 TIGR00362 DnaA chromosomal rep 91.2 0.23 4.9E-06 50.4 4.2 36 91-126 138-175 (405)
355 PLN02348 phosphoribulokinase 91.2 0.38 8.2E-06 48.3 5.5 43 87-129 47-104 (395)
356 PRK00091 miaA tRNA delta(2)-is 91.0 0.23 4.9E-06 48.5 3.8 34 89-127 4-37 (307)
357 PRK13808 adenylate kinase; Pro 90.9 4.7 0.0001 39.8 12.8 22 91-113 3-24 (333)
358 COG1855 ATPase (PilT family) [ 90.8 0.24 5.2E-06 50.0 3.7 34 86-120 261-294 (604)
359 PRK00625 shikimate kinase; Pro 90.8 0.22 4.9E-06 44.3 3.2 30 92-126 3-32 (173)
360 PF07724 AAA_2: AAA domain (Cd 90.7 0.39 8.4E-06 42.7 4.7 39 89-127 3-42 (171)
361 PRK13949 shikimate kinase; Pro 90.7 0.25 5.4E-06 43.7 3.4 31 90-126 3-33 (169)
362 PF00437 T2SE: Type II/IV secr 90.7 0.29 6.2E-06 46.6 4.1 38 88-125 126-163 (270)
363 TIGR02881 spore_V_K stage V sp 90.7 0.24 5.2E-06 47.0 3.5 26 92-117 45-70 (261)
364 cd00464 SK Shikimate kinase (S 90.6 0.26 5.6E-06 42.3 3.4 30 92-126 2-31 (154)
365 TIGR02239 recomb_RAD51 DNA rep 90.5 0.46 1E-05 46.5 5.4 53 75-127 80-140 (316)
366 PLN03127 Elongation factor Tu; 90.5 1.2 2.6E-05 45.8 8.7 41 314-354 149-189 (447)
367 PRK01184 hypothetical protein; 90.4 0.31 6.7E-06 43.4 3.8 30 90-125 2-31 (184)
368 PRK02496 adk adenylate kinase; 90.3 0.28 6.1E-06 43.7 3.5 24 89-113 2-25 (184)
369 cd00544 CobU Adenosylcobinamid 90.3 0.37 7.9E-06 42.7 4.1 32 91-125 1-32 (169)
370 cd01132 F1_ATPase_alpha F1 ATP 90.3 9.8 0.00021 36.4 14.0 37 288-324 195-231 (274)
371 PF00009 GTP_EFTU: Elongation 90.3 6.1 0.00013 35.2 12.2 86 314-406 95-180 (188)
372 PRK13975 thymidylate kinase; P 90.3 0.29 6.3E-06 44.0 3.6 26 89-114 2-27 (196)
373 KOG2749 mRNA cleavage and poly 90.2 0.58 1.3E-05 45.9 5.6 41 88-129 103-143 (415)
374 TIGR01650 PD_CobS cobaltochela 90.2 0.41 8.8E-06 46.9 4.7 44 92-138 67-110 (327)
375 PRK12337 2-phosphoglycerate ki 90.1 0.3 6.5E-06 50.0 3.8 37 88-128 254-290 (475)
376 TIGR01360 aden_kin_iso1 adenyl 90.1 0.3 6.4E-06 43.4 3.4 23 91-113 5-27 (188)
377 PF05970 PIF1: PIF1-like helic 90.0 0.36 7.8E-06 48.3 4.3 52 89-140 22-81 (364)
378 PRK00149 dnaA chromosomal repl 90.0 0.32 7E-06 50.0 4.1 36 91-126 150-187 (450)
379 TIGR00484 EF-G translation elo 89.9 1.3 2.8E-05 48.3 8.7 41 314-355 100-140 (689)
380 PRK14730 coaE dephospho-CoA ki 89.9 0.41 8.8E-06 43.4 4.2 32 91-127 3-34 (195)
381 PRK14531 adenylate kinase; Pro 89.9 0.32 6.9E-06 43.5 3.5 23 91-113 4-26 (183)
382 cd01128 rho_factor Transcripti 89.8 11 0.00024 35.5 14.0 29 87-116 15-43 (249)
383 COG0468 RecA RecA/RadA recombi 89.8 0.53 1.1E-05 45.2 5.0 48 79-126 48-97 (279)
384 PRK03003 GTP-binding protein D 89.8 2.6 5.6E-05 43.7 10.5 40 314-354 119-158 (472)
385 cd01428 ADK Adenylate kinase ( 89.8 0.39 8.4E-06 42.9 4.0 30 92-126 2-31 (194)
386 TIGR02782 TrbB_P P-type conjug 89.7 0.4 8.6E-06 46.6 4.2 36 89-124 132-169 (299)
387 PRK14527 adenylate kinase; Pro 89.6 0.35 7.6E-06 43.5 3.5 24 90-113 7-30 (191)
388 KOG3347 Predicted nucleotide k 89.6 0.3 6.5E-06 42.2 2.8 21 90-111 9-29 (176)
389 COG0125 Tmk Thymidylate kinase 89.5 0.66 1.4E-05 42.6 5.3 35 90-124 4-38 (208)
390 PRK12739 elongation factor G; 89.5 1.9 4.1E-05 47.0 9.7 41 314-355 98-138 (691)
391 PRK08356 hypothetical protein; 89.5 0.5 1.1E-05 42.7 4.5 26 90-119 6-31 (195)
392 TIGR03594 GTPase_EngA ribosome 89.5 3.4 7.3E-05 42.1 11.1 40 314-354 80-119 (429)
393 PF05496 RuvB_N: Holliday junc 89.4 0.26 5.6E-06 45.6 2.5 32 91-125 52-83 (233)
394 PRK00411 cdc6 cell division co 89.4 0.69 1.5E-05 46.5 5.8 39 90-128 56-96 (394)
395 cd02022 DPCK Dephospho-coenzym 89.4 0.38 8.3E-06 42.9 3.5 30 92-127 2-31 (179)
396 PRK10536 hypothetical protein; 89.4 0.77 1.7E-05 43.5 5.6 48 90-138 75-123 (262)
397 PRK10463 hydrogenase nickel in 89.3 0.6 1.3E-05 45.0 5.0 45 83-128 98-142 (290)
398 smart00763 AAA_PrkA PrkA AAA d 89.3 0.39 8.5E-06 47.6 3.8 28 88-115 77-104 (361)
399 PRK14088 dnaA chromosomal repl 89.2 0.4 8.6E-06 49.3 4.0 35 92-126 133-169 (440)
400 PLN02165 adenylate isopentenyl 89.2 0.35 7.5E-06 47.5 3.4 36 87-127 41-76 (334)
401 PRK00741 prfC peptide chain re 89.2 1.6 3.4E-05 45.9 8.5 40 314-354 104-143 (526)
402 PF13521 AAA_28: AAA domain; P 89.2 0.36 7.8E-06 42.1 3.2 20 93-112 3-22 (163)
403 PRK13764 ATPase; Provisional 89.1 0.47 1E-05 50.4 4.5 35 90-124 258-292 (602)
404 TIGR02322 phosphon_PhnN phosph 89.1 0.34 7.5E-06 42.9 3.0 25 91-115 3-27 (179)
405 PF02572 CobA_CobO_BtuR: ATP:c 89.0 0.62 1.3E-05 41.4 4.5 34 91-125 6-39 (172)
406 PRK14528 adenylate kinase; Pro 89.0 0.49 1.1E-05 42.5 4.0 22 92-113 4-25 (186)
407 PRK05057 aroK shikimate kinase 88.9 0.46 1E-05 42.1 3.7 32 91-127 6-37 (172)
408 COG2256 MGS1 ATPase related to 88.9 0.39 8.4E-06 47.9 3.4 34 79-112 38-71 (436)
409 cd01129 PulE-GspE PulE/GspE Th 88.9 0.45 9.7E-06 45.4 3.8 37 88-124 79-115 (264)
410 PF05707 Zot: Zonular occluden 88.8 0.36 7.9E-06 43.6 3.0 35 91-126 2-37 (193)
411 PLN03025 replication factor C 88.8 0.6 1.3E-05 45.7 4.8 35 92-126 37-71 (319)
412 PRK13695 putative NTPase; Prov 88.8 0.67 1.4E-05 40.9 4.6 29 93-121 4-32 (174)
413 TIGR02760 TraI_TIGR conjugativ 88.7 1.8 3.8E-05 52.6 9.4 47 88-136 445-491 (1960)
414 PRK04182 cytidylate kinase; Pr 88.7 0.37 8E-06 42.4 2.9 30 91-125 2-31 (180)
415 PRK00081 coaE dephospho-CoA ki 88.6 0.51 1.1E-05 42.7 3.9 32 90-127 3-34 (194)
416 PF01580 FtsK_SpoIIIE: FtsK/Sp 88.6 0.48 1E-05 43.0 3.7 42 93-134 42-86 (205)
417 PRK14491 putative bifunctional 88.6 0.79 1.7E-05 48.9 5.8 39 88-127 10-48 (597)
418 PRK13976 thymidylate kinase; P 88.6 0.64 1.4E-05 42.7 4.5 33 91-123 2-36 (209)
419 PRK14532 adenylate kinase; Pro 88.5 0.35 7.6E-06 43.2 2.7 30 92-126 3-32 (188)
420 COG0194 Gmk Guanylate kinase [ 88.3 0.41 8.8E-06 42.9 2.9 25 89-113 4-28 (191)
421 PRK12402 replication factor C 88.2 0.64 1.4E-05 45.5 4.6 35 91-125 38-74 (337)
422 PRK14733 coaE dephospho-CoA ki 88.2 0.63 1.4E-05 42.6 4.2 34 90-128 7-40 (204)
423 COG1663 LpxK Tetraacyldisaccha 88.1 0.46 1E-05 46.4 3.3 40 89-128 48-88 (336)
424 TIGR02768 TraA_Ti Ti-type conj 88.0 0.61 1.3E-05 51.1 4.6 35 90-124 369-403 (744)
425 COG0563 Adk Adenylate kinase a 88.0 0.49 1.1E-05 42.3 3.2 17 96-112 7-23 (178)
426 PF07726 AAA_3: ATPase family 87.5 0.26 5.7E-06 41.5 1.1 43 93-138 3-45 (131)
427 PRK14490 putative bifunctional 87.5 0.93 2E-05 45.4 5.2 36 89-126 6-41 (369)
428 PRK10865 protein disaggregatio 87.4 0.63 1.4E-05 51.9 4.3 41 86-126 196-243 (857)
429 KOG3062 RNA polymerase II elon 87.4 0.86 1.9E-05 42.0 4.4 34 91-124 3-38 (281)
430 CHL00071 tufA elongation facto 87.4 5.7 0.00012 40.3 11.0 41 314-354 100-140 (409)
431 PF02492 cobW: CobW/HypB/UreG, 87.3 1.1 2.3E-05 39.9 5.0 37 91-128 2-38 (178)
432 PRK08154 anaerobic benzoate ca 87.2 0.58 1.3E-05 45.7 3.6 33 89-126 133-165 (309)
433 COG2205 KdpD Osmosensitive K+ 87.2 50 0.0011 36.4 17.9 51 88-138 21-74 (890)
434 PRK14530 adenylate kinase; Pro 87.2 0.57 1.2E-05 43.0 3.3 23 90-113 5-27 (215)
435 PLN02422 dephospho-CoA kinase 87.1 0.75 1.6E-05 43.0 4.1 31 91-127 3-33 (232)
436 PRK12736 elongation factor Tu; 87.1 3.7 8.1E-05 41.5 9.4 41 314-354 100-140 (394)
437 PF01268 FTHFS: Formate--tetra 87.0 0.59 1.3E-05 48.6 3.5 50 87-139 53-106 (557)
438 TIGR03015 pepcterm_ATPase puta 87.0 0.5 1.1E-05 44.6 2.9 26 89-114 43-68 (269)
439 PF13555 AAA_29: P-loop contai 87.0 0.82 1.8E-05 33.3 3.3 24 91-114 25-48 (62)
440 COG1428 Deoxynucleoside kinase 87.0 0.57 1.2E-05 42.8 3.0 25 90-114 5-29 (216)
441 TIGR03263 guanyl_kin guanylate 86.9 0.51 1.1E-05 41.7 2.8 23 91-113 3-25 (180)
442 TIGR01351 adk adenylate kinase 86.9 0.51 1.1E-05 43.2 2.8 21 93-113 3-23 (210)
443 TIGR02173 cyt_kin_arch cytidyl 86.8 0.57 1.2E-05 40.9 3.0 31 91-126 2-32 (171)
444 PRK00279 adk adenylate kinase; 86.8 0.56 1.2E-05 43.0 3.0 22 92-113 3-24 (215)
445 TIGR03324 alt_F1F0_F1_al alter 86.8 18 0.00038 37.7 14.0 37 287-323 287-323 (497)
446 PF00580 UvrD-helicase: UvrD/R 86.7 1.2 2.5E-05 42.8 5.4 37 89-126 14-54 (315)
447 PRK00440 rfc replication facto 86.6 0.9 1.9E-05 44.0 4.5 35 92-126 41-75 (319)
448 PRK12735 elongation factor Tu; 86.6 8.3 0.00018 39.0 11.6 41 314-354 100-140 (396)
449 KOG0991 Replication factor C, 86.5 0.35 7.6E-06 44.9 1.4 35 91-125 50-84 (333)
450 cd02026 PRK Phosphoribulokinas 86.5 0.48 1E-05 45.4 2.4 34 92-127 2-35 (273)
451 PF00308 Bac_DnaA: Bacterial d 86.4 0.84 1.8E-05 42.2 4.0 35 92-126 37-73 (219)
452 PF10662 PduV-EutP: Ethanolami 86.4 0.63 1.4E-05 40.0 2.9 22 88-110 1-22 (143)
453 PF01591 6PF2K: 6-phosphofruct 86.4 1.3 2.9E-05 41.0 5.2 40 87-126 10-49 (222)
454 PRK09281 F0F1 ATP synthase sub 86.3 16 0.00035 38.1 13.6 37 287-323 287-323 (502)
455 TIGR00152 dephospho-CoA kinase 86.3 0.67 1.5E-05 41.5 3.2 31 92-127 2-32 (188)
456 PF08423 Rad51: Rad51; InterP 86.3 0.55 1.2E-05 44.6 2.7 53 76-128 23-83 (256)
457 KOG1969 DNA replication checkp 86.2 0.96 2.1E-05 48.4 4.6 38 86-126 323-360 (877)
458 PRK07429 phosphoribulokinase; 86.2 0.84 1.8E-05 44.9 4.0 38 89-128 8-45 (327)
459 TIGR00635 ruvB Holliday juncti 86.2 1.1 2.4E-05 43.3 4.9 32 92-126 33-64 (305)
460 PRK14734 coaE dephospho-CoA ki 86.1 1 2.2E-05 41.0 4.3 30 91-126 3-32 (200)
461 TIGR03783 Bac_Flav_CT_G Bacter 86.1 0.87 1.9E-05 50.5 4.5 44 93-136 442-486 (829)
462 PRK04195 replication factor C 86.1 0.98 2.1E-05 47.0 4.7 35 89-126 39-73 (482)
463 CHL00059 atpA ATP synthase CF1 85.9 20 0.00044 37.1 13.9 37 287-323 266-302 (485)
464 TIGR00485 EF-Tu translation el 85.9 3.5 7.5E-05 41.7 8.5 41 314-354 100-140 (394)
465 PF07517 SecA_DEAD: SecA DEAD- 85.7 0.99 2.1E-05 43.1 4.1 32 96-127 97-128 (266)
466 COG0645 Predicted kinase [Gene 85.7 0.7 1.5E-05 40.7 2.8 25 90-114 2-26 (170)
467 PRK10078 ribose 1,5-bisphospho 85.6 0.69 1.5E-05 41.4 2.9 24 90-113 3-26 (186)
468 PRK00080 ruvB Holliday junctio 85.6 1.3 2.8E-05 43.6 5.0 33 91-126 53-85 (328)
469 PRK11545 gntK gluconate kinase 85.5 0.73 1.6E-05 40.5 3.0 28 96-128 2-29 (163)
470 smart00487 DEXDc DEAD-like hel 85.5 1.1 2.5E-05 39.0 4.3 36 90-125 25-62 (201)
471 PRK14086 dnaA chromosomal repl 85.5 0.92 2E-05 48.2 4.1 36 91-126 316-353 (617)
472 PRK05800 cobU adenosylcobinami 85.5 0.89 1.9E-05 40.3 3.5 32 91-125 3-34 (170)
473 PRK13342 recombination factor 85.4 0.83 1.8E-05 46.5 3.7 43 80-125 27-69 (413)
474 COG4185 Uncharacterized protei 85.4 0.31 6.7E-06 42.6 0.5 37 88-127 1-37 (187)
475 PF02223 Thymidylate_kin: Thym 85.3 0.85 1.8E-05 40.6 3.4 32 96-128 3-34 (186)
476 COG0237 CoaE Dephospho-CoA kin 85.2 1.1 2.5E-05 40.8 4.1 32 89-127 3-34 (201)
477 TIGR02928 orc1/cdc6 family rep 85.0 1.6 3.5E-05 43.2 5.6 38 90-127 41-84 (365)
478 PTZ00451 dephospho-CoA kinase; 85.0 1.1 2.3E-05 42.2 4.0 32 91-127 3-34 (244)
479 PLN02318 phosphoribulokinase/u 84.8 1.1 2.5E-05 47.3 4.4 39 87-129 63-101 (656)
480 PTZ00088 adenylate kinase 1; P 84.8 0.82 1.8E-05 42.6 3.1 30 92-126 9-38 (229)
481 TIGR00017 cmk cytidylate kinas 84.6 1 2.2E-05 41.7 3.6 25 89-113 2-26 (217)
482 COG3911 Predicted ATPase [Gene 84.6 0.97 2.1E-05 39.1 3.1 27 89-119 9-35 (183)
483 PRK14738 gmk guanylate kinase; 84.5 0.92 2E-05 41.4 3.2 23 88-110 12-34 (206)
484 PLN02840 tRNA dimethylallyltra 84.5 0.98 2.1E-05 45.8 3.7 34 89-127 21-54 (421)
485 PRK14087 dnaA chromosomal repl 84.5 1.1 2.3E-05 46.3 4.0 35 92-126 144-180 (450)
486 PRK13507 formate--tetrahydrofo 84.4 0.82 1.8E-05 47.5 3.1 50 88-139 63-115 (587)
487 PLN02748 tRNA dimethylallyltra 84.4 1.5 3.2E-05 45.2 5.0 33 90-127 23-55 (468)
488 PF01202 SKI: Shikimate kinase 84.3 0.62 1.3E-05 40.6 1.9 25 98-127 1-25 (158)
489 TIGR00150 HI0065_YjeE ATPase, 84.2 0.98 2.1E-05 38.4 3.0 26 89-114 22-47 (133)
490 COG0378 HypB Ni2+-binding GTPa 84.2 2.2 4.8E-05 38.5 5.4 45 90-135 14-59 (202)
491 PLN03210 Resistant to P. syrin 84.2 1.4 3E-05 51.0 5.2 35 90-124 208-242 (1153)
492 TIGR02746 TraC-F-type type-IV 84.1 1.1 2.4E-05 49.6 4.3 45 92-136 433-478 (797)
493 KOG2878 Predicted kinase [Gene 84.0 1.2 2.6E-05 40.4 3.6 40 88-127 30-72 (282)
494 TIGR03346 chaperone_ClpB ATP-d 83.9 1.2 2.7E-05 49.6 4.5 41 86-126 191-238 (852)
495 TIGR01447 recD exodeoxyribonuc 83.9 1.3 2.8E-05 47.2 4.4 28 89-116 160-187 (586)
496 TIGR03172 probable selenium-de 83.8 1.4 3.1E-05 41.1 4.2 32 91-125 2-33 (232)
497 PRK14731 coaE dephospho-CoA ki 83.7 1.4 3E-05 40.4 4.0 31 90-126 6-36 (208)
498 TIGR03346 chaperone_ClpB ATP-d 83.6 1.6 3.4E-05 48.8 5.2 49 90-138 596-647 (852)
499 PRK13833 conjugal transfer pro 83.6 1.4 2.9E-05 43.4 4.1 35 90-124 145-181 (323)
500 TIGR00962 atpA proton transloc 83.6 30 0.00064 36.2 14.1 36 288-323 287-322 (501)
No 1
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-54 Score=388.98 Aligned_cols=313 Identities=40% Similarity=0.658 Sum_probs=279.9
Q ss_pred chhhhhcCCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccccCCccccccCCCCCeeeec
Q 015096 79 GFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALE 158 (413)
Q Consensus 79 ~~~~~~~~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~ 158 (413)
++..++++...+++|++|||||||||+|+.||..||+-+.+||+|++||+||+++.|+++. ++.|+.+.|.++ |++++
T Consensus 9 ~l~nil~q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlSDAF~qkf-tk~pt~V~Gf~n-LfAME 86 (323)
T KOG2825|consen 9 TLQNILEQTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLSDAFSQKF-TKTPTKVEGFEN-LFAME 86 (323)
T ss_pred hHHHHhhcceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchHHHHHHHh-cCCCccccChhh-heeee
Confidence 6677888899999999999999999999999999999999999999999999999999998 589999999887 99999
Q ss_pred cChHHHHHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEE
Q 015096 159 INPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVF 238 (413)
Q Consensus 159 ~d~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IVi 238 (413)
+||.....+..+...... ..... .|.+.+.+... ..||.+|.++...+.+++.. . +||.|||
T Consensus 87 IDp~~e~~~~~~m~~~~~---~n~~~--~g~g~l~e~~~----------~~Pgideamsfae~~klvk~--~-~F~~vVF 148 (323)
T KOG2825|consen 87 IDPNVEMGDMPEMFGNAA---NNEGS--DGKGMLQELAN----------AFPGIDEAMSFAEVMKLVKG--M-NFDVVVF 148 (323)
T ss_pred cCCchhhhhhHHHhhccc---ccccc--cchhHHHHHHh----------cCCChhHHHhHHHHHHHhhc--c-ccceEEe
Confidence 999987776665433221 11222 22333433332 37999999999999999975 3 3999999
Q ss_pred cCCCChhHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcc-chhhHHHHHHHHHHHHHHHHHHhcCCCCceEE
Q 015096 239 DTAPTGHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQ-NRQGASDKLERLRERMVKVRELFRDTDSTEFV 317 (413)
Q Consensus 239 DtpP~~~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~v 317 (413)
||+|||||+|+|.+|..+++.+++++.++.|+.+..+.+.+.||.+. ..+++...++.+++.++++++.++||+.|.||
T Consensus 149 DTAPTGHTLRlL~fP~~lek~lgKl~~l~~k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFV 228 (323)
T KOG2825|consen 149 DTAPTGHTLRLLQFPTTLEKGLGKLLSLKNKIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFV 228 (323)
T ss_pred ccCCCcceehhhccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEE
Confidence 99999999999999999999999999999999999999999999864 56899999999999999999999999999999
Q ss_pred EEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCCCC-CchHHHHHHHHHHHHHHHHhHhcCCCCCCceEEecCCCC
Q 015096 318 IVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSA-SDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDV 396 (413)
Q Consensus 318 lVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~~~-~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~~~~P~~~~ 396 (413)
.|+.|+.+++.|++|++..|.+.++++..+|||+++++.. ..|..|..|++.|.+||..|.++++ +..+..+|+++.
T Consensus 229 cVcI~eflslyEteRliqeL~k~~idthnIIVNQLL~~~~~~~ck~C~ar~k~Q~kyLdqi~elye--dfhv~klPl~~~ 306 (323)
T KOG2825|consen 229 CVCIAEFLSLYETERLIQELAKQGIDTHNIIVNQLLFPDNEVSCKKCAARRKMQSKYLDQIEELYE--DFHVVKLPLLPM 306 (323)
T ss_pred EEEHHHHHhHHHHHHHHHHHHhcCCcccceeeeeccCCCCccchHHHHHHHHHHHHHhhhHHHHHh--hcceeecccchh
Confidence 9999999999999999999999999999999999988766 7899999999999999999999754 689999999999
Q ss_pred CCCCHHHHHHHHHHhhC
Q 015096 397 EIRGVPALRFMGDIIWK 413 (413)
Q Consensus 397 e~~g~~~L~~l~~~~~~ 413 (413)
|++|+++|+.|++.+||
T Consensus 307 EvrG~~al~~fse~l~k 323 (323)
T KOG2825|consen 307 EVRGVEALNFFSEILLK 323 (323)
T ss_pred hhcCHHHHHHHHHHhcC
Confidence 99999999999999986
No 2
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=100.00 E-value=3.5e-54 Score=416.80 Aligned_cols=303 Identities=43% Similarity=0.680 Sum_probs=251.8
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccccCCccccccCCCCCeeeeccChHHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREEFR 169 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~~~~~~ 169 (413)
++++++|||||||||+|+++|+++|++|+||||+++||+|++++.||.+. ++.++.+.+.++ |++.++|+...++++.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~l~~~~-~~~~~~v~~~~~-L~a~eid~~~~~~~~~ 79 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDVLGQKL-GGEPTKVEGVPN-LSAMEIDPEAELEEYW 79 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHHHTS---BSS-EEETTCSS-EEEEE--HHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHHhCCcC-CCCCeEecCCCC-ceeeecCHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999987 678888886554 9999999999998887
Q ss_pred hhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCChhHHHh
Q 015096 170 NVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHTLRL 249 (413)
Q Consensus 170 ~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~~~l~~ 249 (413)
..........+ .......+.. +. ...+||.+|++.+.++.++++. ++||+||||||||||++++
T Consensus 80 ~~~~~~~~~~~----~~~~~~~~~~--------~~-~~~~PG~~E~~~l~~l~~~~~~---~~~D~IVvDt~ptg~tLrl 143 (305)
T PF02374_consen 80 EEVQKDLSSLL----PLIGLERILD--------EE-LSSLPGLDELAALLRLADLLES---GEYDLIVVDTPPTGHTLRL 143 (305)
T ss_dssp HHHHHGCSTCH----HCHHHHHHHH--------HH-TTSSTTHHHHHHHHHHHHHHHH---CSTSEEEEESSSSHHHHHH
T ss_pred HHHHhhhccch----hhhhhHHHHH--------HH-HhcCCcHHHHHHHHHHHHHHHh---CCCCEEEECCCCcHHHHHH
Confidence 75543322211 1001111111 11 1347999999999999999974 5699999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcc-chhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcccHH
Q 015096 250 LSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQ-NRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVS 328 (413)
Q Consensus 250 l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~~~~~ 328 (413)
|.+|+.+.+|++++++++.++.+..+.+.+ ++.+. ..+.+++.++++++++++++++|+||..|.+++|++||.+++.
T Consensus 144 L~lP~~l~~~l~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lV~~pE~l~i~ 222 (305)
T PF02374_consen 144 LSLPERLRWWLDRLLKLRRKIRSLARPLSG-LGLGAVPLDEILEELEEMRERLERLRELLRDPERTSFRLVTNPEPLAIA 222 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHCH-SHCCHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEEEEEESSHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHhhcchhhhhhc-ccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCcchHH
Confidence 999999999999999999998888777755 33322 3357899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCeEEEecccCCCCCchHHHHHHHHHHHHHHHHhHhcCCCCCCceEEecCCCCCCCCHHHHHHHH
Q 015096 329 ESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRGVPALRFMG 408 (413)
Q Consensus 329 ~~~r~~~~l~~~g~~~~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~~~~P~~~~e~~g~~~L~~l~ 408 (413)
|++|+++.|+++|+++.++||||+.|+...+|+||..+.+.|.++|+.|++ .|.+.+++.+|++..||+|+++|+.|+
T Consensus 223 Et~r~~~~L~~~gi~v~~vVvNrvlp~~~~~c~~~~~r~~~Q~~~l~~i~~--~f~~~~v~~vp~~~~ev~G~~~L~~~~ 300 (305)
T PF02374_consen 223 ETERLLTELKLYGIPVDAVVVNRVLPEEEDDCPFCAARRKEQQKYLAEIEE--SFPDLPVVKVPLLPEEVRGLDALEALA 300 (305)
T ss_dssp HHHHHHHHHHHTT-EEEEEEEEEE-TTCSTTSHHHHHHHHHHHHHHHHHHH--HTTTSEEEEEE--SS-S-SHHHHHHHH
T ss_pred HHHHHHHHHHhcCCccCeEEEEccccccccchHHHHHHHHHHHHHHHHHHH--HhcCCCEEEecCCCCCCCCHHHHHHHH
Confidence 999999999999999999999999999877799999999999999999998 578999999999999999999999999
Q ss_pred HHhhC
Q 015096 409 DIIWK 413 (413)
Q Consensus 409 ~~~~~ 413 (413)
++|||
T Consensus 301 ~~L~~ 305 (305)
T PF02374_consen 301 DHLYK 305 (305)
T ss_dssp HHHH-
T ss_pred HHhcC
Confidence 99996
No 3
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=100.00 E-value=3.1e-47 Score=367.04 Aligned_cols=301 Identities=39% Similarity=0.626 Sum_probs=259.9
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccccCCccccccCCCCCeeeeccChHHHHHHH
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREEF 168 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~~~~~ 168 (413)
.+|++++|||||||||+|+++|+.+|+.|+|||+|++||+|||++.|+.+. +..+..+.+ ||++.++|++...++|
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~el-g~~~~~I~~---nL~a~eiD~~~~l~ey 77 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLEL-GHDPRKVGP---NLDALELDPEKALEEY 77 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhcccc-CCchhhcCC---CCceeeecHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999966 677777773 6999999999999998
Q ss_pred HhhhhccCCcchhhhhcccch-hhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCChhHH
Q 015096 169 RNVTQKDGGTGVKDFMDGMGL-GMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHTL 247 (413)
Q Consensus 169 ~~~~~~~~~~~l~~l~~~~~~-~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~~~l 247 (413)
++.+.. .+...+...++ +...+.+ ...||.+|++.+.++.+++.+ ++||+||||||||||++
T Consensus 78 ~~~v~~----~~~~~~~~~~l~~~~~~e~----------~~~PGidE~~~l~~i~e~~~~---~~yD~IV~DtaPTG~TL 140 (322)
T COG0003 78 WDEVKD----YLARLLRTRGLGGIYADEL----------ATLPGIDEALALLKILEYYVS---GEYDVIVVDTAPTGHTL 140 (322)
T ss_pred HHHHHH----HHHhhccccccchhHHHHH----------hhCCCHHHHHHHHHHHHHHhc---cCCCEEEEcCCChHHHH
Confidence 875532 12222222221 1122222 238999999999999999976 45999999999999999
Q ss_pred HhcCChHHHHHHHHHHHH-HHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccc
Q 015096 248 RLLSLPDFLDASIGKILK-LREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMA 326 (413)
Q Consensus 248 ~~l~l~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~~~ 326 (413)
|+|.+|+.++||++++++ .++++......++.+.|.....+.+++.|+.+.++..++++.+.+|..|.+++|++|+.++
T Consensus 141 RlL~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~lV~~pe~l~ 220 (322)
T COG0003 141 RLLSLPEVLGWYLEKLFKPRRKRMVKALKSLSTAAGSPLPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLS 220 (322)
T ss_pred HHhccHHHHHHHHHhhhhhHHHHHHHhhhhcccccCCcCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEecccccc
Confidence 999999999999999996 6666666666666666666567889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEEecccCCCCCchHHHHHHHHHHHHHHHHhHhcCCCCCCceEEecCCCCCCCCHHHHHH
Q 015096 327 VSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRGVPALRF 406 (413)
Q Consensus 327 ~~~~~r~~~~l~~~g~~~~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~~~~P~~~~e~~g~~~L~~ 406 (413)
+.++.|+++.+.++++++.++++|++.|.. .++.+|..+...|.+++..+.+ .|.+..+..+|++.+|++|.++|.+
T Consensus 221 l~e~~ra~~~l~~~~i~v~~vi~n~~~p~~-~~~~~~~~~~~~q~~~l~~~~~--~f~~~~v~~vp~~~ee~~g~~~l~~ 297 (322)
T COG0003 221 LYETKRAVERLSLYGIPVDAVIVNKILPDE-ADQPFLEARRKIQQKYLKELEE--TFSDLAVVKVPLLAEEPVGLEALEK 297 (322)
T ss_pred hHHHHHHHHHHHHcCCchheeeeecccccc-cccHHHHHHHHHHHHHHHHHHH--hhcccceEEecccccccccHHHHHH
Confidence 999999999999999999999999999985 4556999999999999999998 6899999999999999999999999
Q ss_pred HHHHhhC
Q 015096 407 MGDIIWK 413 (413)
Q Consensus 407 l~~~~~~ 413 (413)
|++.+++
T Consensus 298 l~~~l~~ 304 (322)
T COG0003 298 LGDLLYG 304 (322)
T ss_pred HHHhccC
Confidence 9998764
No 4
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=100.00 E-value=3.8e-42 Score=325.75 Aligned_cols=252 Identities=41% Similarity=0.669 Sum_probs=207.7
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccccCCccccccCCCCCeeeeccChHHHHHHHHh
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREEFRN 170 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~~~~~~~ 170 (413)
+++++||||+||||+|+|+|.++|+.|+||||||+||+++++++||.+. +..+....+.. ++++.++|++..++++..
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~sl~~~~~~~~-~~~~~~~~g~~-~L~~~~id~~~~~~~~~~ 79 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAHSLSDSFNQEF-GKGPTPVKGVE-NLSAMEIDPQEALEEYRQ 79 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcccHHHHhCCcc-CCCCcccccCC-CceEEecCHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999974 22333444433 499999999998877654
Q ss_pred hhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCChhHHHhc
Q 015096 171 VTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHTLRLL 250 (413)
Q Consensus 171 ~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~~~l~~l 250 (413)
... +.+............+. +.+ . .||++|++.+.++.+++++ .+||||||||||++|++++|
T Consensus 80 ~~~-------~~~~~~~~~~~~~~~~~-----~~~-~-~Pg~~e~l~~~~~~~~l~~---~~yD~VVvDtpPtg~tlrlL 142 (254)
T cd00550 80 EVL-------EPIEANLLLEMLKGILE-----EEL-E-SPGIEEIAAFDEFSRYIDE---AEYDVVVFDTAPTGHTLRLL 142 (254)
T ss_pred HHH-------HHHHhhccchhHHHHHH-----HHh-c-CCCHHHHHHHHHHHHHHhc---CCCCEEEECCCCcHHHHHHH
Confidence 221 11111111111111111 111 2 4999999999999999964 36999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcccHHHH
Q 015096 251 SLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVSES 330 (413)
Q Consensus 251 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~~~~~~~ 330 (413)
.+|+.+++ +++.+.|+..+++++|++|+.+++.++
T Consensus 143 ~lp~~l~~---------------------------------------------~~~~l~d~~~~~~vlV~~p~~~~~~e~ 177 (254)
T cd00550 143 SLPTVLSW---------------------------------------------AREILSDPERTSFRLVCIPEKMSLYET 177 (254)
T ss_pred HhHHHHHH---------------------------------------------HHHHhcCCcceEEEEEeCCChhHHHHH
Confidence 99987652 345788999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCeEEEecccCCCCCchHHHHHHHHHHHHHHHHhHhcCCCCCCceEEecCCCCCCCCHHHHHHHH
Q 015096 331 SRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRGVPALRFMG 408 (413)
Q Consensus 331 ~r~~~~l~~~g~~~~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~~~~P~~~~e~~g~~~L~~l~ 408 (413)
+++++.|+.+|+++.|+|+|++.|.....|++|+.+.+.|.++|++|++ .|.+.+++.+|++..||+|+++|++|+
T Consensus 178 ~r~~~~L~~~g~~v~gvV~N~v~~~~~~~~~~~~~~~~~q~~~l~~~~~--~~~~~~i~~vp~~~~e~~g~~~L~~~~ 253 (254)
T cd00550 178 ERAIQELAKYGIDVDAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEE--LFSDLPVAKLPLLPEEVVGLEKLEQFA 253 (254)
T ss_pred HHHHHHHHHCCCCCCEEEEecCcccccCCCHHHHHHHHHHHHHHHHHHH--HhcCCCEEEeecCCCCCCCHHHHHHHh
Confidence 9999999999999999999999998665799999999999999999998 578999999999999999999999886
No 5
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=100.00 E-value=7.4e-40 Score=314.76 Aligned_cols=284 Identities=36% Similarity=0.577 Sum_probs=238.9
Q ss_pred HHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccccCCccccccCCCCCeeeeccChHHHHHHHHhhhhccCCcchhhhh
Q 015096 105 CAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFM 184 (413)
Q Consensus 105 vAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~l~~l~ 184 (413)
+|+++|..+|++|+|||+||+||+++++.+||.+. +..++.+.+.+ +|++.++|++..+++|++.+.... ....
T Consensus 1 ~a~a~a~~~a~~g~~vllv~~Dp~~~l~~~~~~~~-~~~~~~v~~~~-~L~~~~id~~~~~~~~~~~~~~~~----~~~~ 74 (284)
T TIGR00345 1 ISCATAIRLAEQGKKVLLVSTDPAHSLSDVFEQEI-GHTPTKVTGVE-NLSAVEIDPQAALEEYRAKLVEQI----KGNL 74 (284)
T ss_pred CHHHHHHHHHHCCCeEEEEECCCCCCHHHHhCCcc-CCCCeeccCCC-CceEEEcCHHHHHHHHHHHHHHHH----hhhc
Confidence 58999999999999999999999999999999986 56777776433 499999999999988876543211 1111
Q ss_pred cccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCChhHHHhcCChHHHHHHHHHHH
Q 015096 185 DGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKIL 264 (413)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~~~l~~l~l~~~~~~~l~~~~ 264 (413)
... ......+. ++ ...||.+|++.+.++.+++.+. .++||+||||||||||++++|.+|+.+.+|+++++
T Consensus 75 ~~~--~~~~~~~~-----~~--~~~PG~~E~~~l~~l~~~~~~~-~~~yD~iVvDtaPtghtLrlL~lP~~l~~~l~~~~ 144 (284)
T TIGR00345 75 PDG--DMLGDQLE-----GA--ALSPGIDEIAAFDEFLKHMTDA-ENEFDVVIFDTAPTGHTLRLLQLPEVLSSFLEKFI 144 (284)
T ss_pred ccc--ccHHHHHh-----cC--CCCCCHHHHHHHHHHHHHHHHh-hccCCEEEECCCChHHHHHHHhhHHHHHHHHHHHH
Confidence 100 11111111 11 3489999999999999998752 35699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcccHHHHHHHHHHHHhCCCCC
Q 015096 265 KLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVSESSRLSESLKKENVPV 344 (413)
Q Consensus 265 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~ 344 (413)
+++.++....+.+ .|.. ..+++++.++.+++++++++++|+||..|++++|++|+.+++.++.++++.++..|+++
T Consensus 145 ~~~~~~~~~~~~~---~~~~-~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlV~~pe~~si~e~~rl~~~L~~~g~~~ 220 (284)
T TIGR00345 145 KIRSKLGPMLKLF---MGAG-ESDEALEKLEELKEQIEAAREILSDPERTSFVLVVIPEKMSLYESERAHKELAKYGIKV 220 (284)
T ss_pred HHHHHHHHHHHHh---cCCC-cchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEECCCCCcHHHHHHHHHHHHhCCCCC
Confidence 9999977655433 4443 45888999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEecccCCCCCchHHHHHHHHHHHHHHHHhHhcCCCCCCceEEecCCCCCCCCHHHHHHHHHHh
Q 015096 345 KRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRGVPALRFMGDII 411 (413)
Q Consensus 345 ~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~~~~P~~~~e~~g~~~L~~l~~~~ 411 (413)
.++|+|++.+.. ..|.+|..+.+.|.++++.+++ .|.+.+++.+|++..||+|+++|+.|++.+
T Consensus 221 ~~lvvN~v~~~~-~~~~~~~~r~~~q~~~L~~i~~--~~~~~~~~~vp~~~~e~~G~~~L~~l~~~~ 284 (284)
T TIGR00345 221 DAVIVNQVLPEN-AQDEFCQARWELQQKYLKEIPE--KFADLPVAEVPLQKEEMVGLEALKRLSKTL 284 (284)
T ss_pred CEEEEeCCcCCC-CCCHHHHHHHHHHHHHHHHHHH--HhcCCCeEEecCCCCCCCCHHHHHHHHhhC
Confidence 999999999863 4689999999999999999998 568899999999999999999999999764
No 6
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.96 E-value=2e-27 Score=220.24 Aligned_cols=213 Identities=37% Similarity=0.549 Sum_probs=148.4
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccccCCccccccCCCCCeeeecc--ChHHHHHHH
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEI--NPEKAREEF 168 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~--d~~~~~~~~ 168 (413)
|++++||||+||||+++|+|..+|+.|+||++||+|+++++.. ....+ +..... +.+.....+
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~----~~~~~-----------L~~~l~~~~~~~~~~~~ 65 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSD----KGLPN-----------LSDAFIVEDPEIAPNLY 65 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCccccc----ccCCC-----------chhhhccCChHHHHHHH
Confidence 5789999999999999999999999999999999999985443 11011 111111 111111111
Q ss_pred HhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCChhHHH
Q 015096 169 RNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHTLR 248 (413)
Q Consensus 169 ~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~~~l~ 248 (413)
....... ..+..... ..+...+ .....+||+.|++.+.++.+.+.. .+||||||||||++++++
T Consensus 66 ~~~~~~~-----~~~~~~~~----~~~~~~~----~~~~~~p~~~ell~~~~l~~~l~~---~~yD~IIiD~pp~~~~~~ 129 (217)
T cd02035 66 REEVDAT-----RRVERAWG----GEGGLML----ELAAALPGIEELASLLAVFREFSE---GLYDVIVFDTAPTGHTLR 129 (217)
T ss_pred HHHHHHH-----HHhhhccc----chhhhHH----hHhccCCCHHHHHHHHHHHHHHhc---CCCCEEEECCCCchHHHH
Confidence 1100000 00000000 0000000 011358999999998888877754 239999999999988876
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcccHH
Q 015096 249 LLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVS 328 (413)
Q Consensus 249 ~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~~~~~ 328 (413)
++. .+.+.|+..+.+++|++|+.+++.
T Consensus 130 ~l~-----------------------------------------------------~~~l~~~~~~~vllV~~p~~~s~~ 156 (217)
T cd02035 130 LLV-----------------------------------------------------RELLTDPERTSFRLVTLPEKLPLY 156 (217)
T ss_pred HHH-----------------------------------------------------HHHccCCCceEEEEEeCCCccHHH
Confidence 541 124556666799999999999999
Q ss_pred HHHHHHHHHHhCCCCCCeEEEecccCCCCCchHHHHHHHHHHHHHHHHhHhcCCCCCCceE
Q 015096 329 ESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLI 389 (413)
Q Consensus 329 ~~~r~~~~l~~~g~~~~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~~ 389 (413)
++.++++.++..|+++.|+|+|++.+.....+.+|..+.+.|.++|..+.+ .+.+.|++
T Consensus 157 ~~~~~l~~l~~~~~~~~glVlN~~~~~~~~~~~~~~~~~~~q~~~l~~~~~--~~~~~~~~ 215 (217)
T cd02035 157 ETERAITELALYGIPVDAVVVNRVLPAEVDDDPFLAARRQIQQKYLAEIEE--LFDDLPIV 215 (217)
T ss_pred HHHHHHHHHHHCCCCCCEEEEeCCcCcccCCCHHHHHHHHHHHHHHHHHHH--HcCCCcee
Confidence 999999999999999999999999887655688999999999999999998 45565554
No 7
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2.2e-27 Score=218.12 Aligned_cols=224 Identities=22% Similarity=0.300 Sum_probs=145.8
Q ss_pred hhhcCCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhhccccCCccccccCCCCCeeeeccC
Q 015096 82 EMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDLTGGQLVPVEGPDFPLFALEIN 160 (413)
Q Consensus 82 ~~~~~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d 160 (413)
+.+.+.+++|+|.||||||||||+|+|||++||..|++|.++|+|+.+ |+..++|.+... .. ....+ ..-+.
T Consensus 41 ~~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~--~~--~~~~g-~~Pv~-- 113 (300)
T KOG3022|consen 41 ENLSGVKHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEV--VH--QSDNG-WIPVV-- 113 (300)
T ss_pred ccccccceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCce--ee--ecCCC-ceeee--
Confidence 356667899999999999999999999999999999999999999996 999999997531 00 00000 00000
Q ss_pred hHHHHHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcC
Q 015096 161 PEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDT 240 (413)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDt 240 (413)
...++. .++++.+.+.- ...+-+........+.+++....|...||+||||
T Consensus 114 ---------------~~~~l~----~mS~gfLl~~~----------~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDt 164 (300)
T KOG3022|consen 114 ---------------VNKNLK----LMSMGFLLKPR----------DDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDT 164 (300)
T ss_pred ---------------ecCCeE----EEEeeeecCCC----------CccceeechHHHHHHHHHHhcCCCCCcCEEEEeC
Confidence 000111 11111111000 0012233446677888999988999999999999
Q ss_pred CCChhHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEE
Q 015096 241 APTGHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVT 320 (413)
Q Consensus 241 pP~~~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt 320 (413)
||... -.++.+.+.+. ..++.++||
T Consensus 165 PPGts-Dehls~~~~~~------------------------------------------------------~~~gAviVT 189 (300)
T KOG3022|consen 165 PPGTS-DEHLSLVQFLR------------------------------------------------------ESDGAVIVT 189 (300)
T ss_pred CCCCC-hhhhheeeccc------------------------------------------------------ccCceEEEe
Confidence 99322 22333322211 115789999
Q ss_pred cCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCCCCCchHHHHH-----------HHHH--HHHHHHHhHhcCCCCCCc
Q 015096 321 IPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAM-----------KRKD--QMRALEMIKSDSELSSLM 387 (413)
Q Consensus 321 ~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~~~~~~~~~~~-----------~~~~--q~~~l~~i~~~~~~~~~~ 387 (413)
||+..++.++++-++++++.++++.|+|.||.. ..|+.|.. +... +..+|+.||.|+.+...-
T Consensus 190 TPQ~vAl~Dv~K~i~fc~K~~I~ilGvVENMs~----f~Cp~C~~~~~iF~~gGg~~l~~~~glp~Lg~iPld~~i~~~~ 265 (300)
T KOG3022|consen 190 TPQEVALQDVRKEIDFCRKAGIPILGVVENMSG----FVCPKCGHSTNIFGSGGGERLAEELGLPLLGSLPLDPLIAESS 265 (300)
T ss_pred CchhhhhHHHHhhhhhhhhcCCceEEEEecccc----ccCCCCCCcceeccCccHHHHHHHcCCCeEeecCCCHHHHHhc
Confidence 999999999999999999999999999999954 34444432 2222 337777787765443322
Q ss_pred eEEecCCCCCCCC
Q 015096 388 LIEAPLVDVEIRG 400 (413)
Q Consensus 388 ~~~~P~~~~e~~g 400 (413)
=...|++...|..
T Consensus 266 d~G~~~v~~~p~s 278 (300)
T KOG3022|consen 266 DSGVPFVEEYPDS 278 (300)
T ss_pred cCCCeeEecCCCc
Confidence 2233444444443
No 8
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.94 E-value=4.1e-26 Score=216.80 Aligned_cols=176 Identities=23% Similarity=0.271 Sum_probs=132.6
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhhccccCCccccccCCCCCeeeeccChHHHH
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAR 165 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~~ 165 (413)
..++|+|+|+|||+||||+|+|||.++|+.|+||+++|+|.++ +++.+||.+...+.+..+.+. . +
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~---~----------~ 122 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGE---A----------L 122 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCC---c----------c
Confidence 5689999999999999999999999999999999999999996 999999997543444333331 0 1
Q ss_pred HHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCChh
Q 015096 166 EEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGH 245 (413)
Q Consensus 166 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~~ 245 (413)
..... ......+..++.+ ..++.+.+.+...++.+++.+..|..||||||||||...
T Consensus 123 ~~~~~---~~~~~~lsi~~~~--------------------~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g 179 (265)
T COG0489 123 EPVIQ---HDGIKVLSILPLG--------------------PVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTG 179 (265)
T ss_pred cccee---cCccceEEEEecC--------------------CCCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCch
Confidence 11000 0001112222111 136778899999999999999888889999999999444
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcc
Q 015096 246 TLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVM 325 (413)
Q Consensus 246 ~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~~ 325 (413)
..++..+. . ..+++++|++|+.+
T Consensus 180 ~~d~~i~~-----------------------------------------------------~----~~~g~viVt~p~~~ 202 (265)
T COG0489 180 DADATVLQ-----------------------------------------------------R----IPDGVVIVTTPGKT 202 (265)
T ss_pred HHHHHHHh-----------------------------------------------------c----cCCeEEEEeCCccc
Confidence 33322110 1 12389999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 326 AVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 326 ~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
+..+++++++++++.+.++.|+|.|+....
T Consensus 203 ~~~~v~ka~~~~~~~~~~vlGvv~Nm~~~~ 232 (265)
T COG0489 203 ALEDVKKAIDMLEKAGIPVLGVVENMSYFI 232 (265)
T ss_pred hHHHHHHHHHHHHhcCCceEEEEecCccCc
Confidence 999999999999999999999999996654
No 9
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.92 E-value=5.8e-25 Score=210.89 Aligned_cols=191 Identities=19% Similarity=0.235 Sum_probs=134.2
Q ss_pred ccccCCcccCCchhhhhc-----CCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhhccccC
Q 015096 68 RAVAAPSEAVSGFDEMVA-----GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDLTG 141 (413)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~-----~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg~~~~~ 141 (413)
.+.++.+|+++.++..+. +..++|.|+|+|||+||||+|.|||.++|+.|+|||+||+|+++ +++..||.+...
T Consensus 78 ~~~~~~~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~~ 157 (274)
T TIGR03029 78 QPFSPQVEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQR 157 (274)
T ss_pred CCCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCCC
Confidence 334455677777776553 46789999999999999999999999999999999999999996 888888876533
Q ss_pred CccccccCCCCCeeeeccChHHHHHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHH
Q 015096 142 GQLVPVEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKV 221 (413)
Q Consensus 142 ~~~~~v~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l 221 (413)
+....+.+. .+. +.+. ......+++.++.+.. .+.+.+.+...++
T Consensus 158 gl~~~l~~~---------~~~---~~i~---~~~~~~~l~~lp~g~~--------------------~~~~~~~~~~~~~ 202 (274)
T TIGR03029 158 GLSDILAGR---------SDL---EVIT---HIPALENLSVLPAGAI--------------------PPNPQELLARPAF 202 (274)
T ss_pred CHHHHhCCC---------CCH---HHee---ecCCCCCEEEEeCcCC--------------------CCCHHHHhCcHHH
Confidence 332222211 011 1100 0011234555554421 3344555555677
Q ss_pred HHHHHhcccCCccEEEEcCCCChhHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHH
Q 015096 222 IQFLESQEYSMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERM 301 (413)
Q Consensus 222 ~~~l~~~~~~~yD~IViDtpP~~~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~ 301 (413)
.+++.+ .+..||||||||||..+..+...+..
T Consensus 203 ~~~l~~-l~~~yD~ViiD~pp~~~~~d~~~~~~----------------------------------------------- 234 (274)
T TIGR03029 203 TDLLNK-VMGDYDVVIVDTPSAEHSSDAQIVAT----------------------------------------------- 234 (274)
T ss_pred HHHHHH-HHhcCCEEEEeCCCcccccHHHHHHH-----------------------------------------------
Confidence 777776 35679999999999644322111111
Q ss_pred HHHHHHhcCCCCceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEec
Q 015096 302 VKVRELFRDTDSTEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQ 351 (413)
Q Consensus 302 ~~~~~~l~d~~~t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~ 351 (413)
..+++++|++++.++..++.++++.++..|.++.|+|+|+
T Consensus 235 ----------~~d~vilV~~~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 235 ----------RARGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred ----------hCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 1358999999999999999999999999999999999996
No 10
>PRK11670 antiporter inner membrane protein; Provisional
Probab=99.91 E-value=6.6e-25 Score=217.87 Aligned_cols=178 Identities=22% Similarity=0.299 Sum_probs=114.5
Q ss_pred cCCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhhccccCCccccccCCCCCeeeeccChHH
Q 015096 85 AGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEK 163 (413)
Q Consensus 85 ~~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~ 163 (413)
.+.+++|+|+||||||||||+|+|||.+||+.|+||+|||+|+++ +++.+||.....+.. .. + .... |..
T Consensus 104 ~~~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~~~~~~~--~~---~-~~i~---p~~ 174 (369)
T PRK11670 104 NGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQRPTS--PD---G-THMA---PIM 174 (369)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCcccCCcc--cC---C-ceee---eee
Confidence 345689999999999999999999999999999999999999996 788999875311110 00 0 0000 000
Q ss_pred HHHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCC
Q 015096 164 AREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPT 243 (413)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~ 243 (413)
..++.. .+.+.+ .... ...+ ..|+ .....+.+++.+..|++||||||||||+
T Consensus 175 -------------~~g~~~----~~~~~l----~~~~-~~~i---~~g~---~~~~~l~~~l~~~~~~~yDyvIID~PPg 226 (369)
T PRK11670 175 -------------AHGLAT----NSIGYL----VTDD-NAMV---WRGP---MASKALMQMLQETLWPDLDYLVLDMPPG 226 (369)
T ss_pred -------------ccCccc----ccHHHh----cCcC-ccee---ecCc---chHHHHHHHHHHHhhccCCEEEEeCCCC
Confidence 000000 000000 0000 0000 1111 1234566666554678899999999994
Q ss_pred hhHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCC
Q 015096 244 GHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPT 323 (413)
Q Consensus 244 ~~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~ 323 (413)
..... +.+.. .+ ..+++++|++|+
T Consensus 227 ~gd~~-l~~~~----------------------------------------------------l~---aad~viiV~tp~ 250 (369)
T PRK11670 227 TGDIQ-LTLAQ----------------------------------------------------NI---PVTGAVVVTTPQ 250 (369)
T ss_pred CchHH-HHHhh----------------------------------------------------hc---cCCeEEEEecCc
Confidence 32210 10000 00 135799999999
Q ss_pred cccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 324 VMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 324 ~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
..++.++.+.++.+++.++++.|+|+||+...
T Consensus 251 ~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~~~ 282 (369)
T PRK11670 251 DIALIDAKKGIVMFEKVEVPVLGIVENMSMHI 282 (369)
T ss_pred hhHHHHHHHHHHHHhccCCCeEEEEEcCCccc
Confidence 99999999999999999999999999997544
No 11
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.91 E-value=4.4e-24 Score=190.14 Aligned_cols=165 Identities=25% Similarity=0.331 Sum_probs=111.6
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhhccccCCccccccCCCCCeeeeccChHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREEF 168 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~~~~~ 168 (413)
+|+|+|+||||||||+|+|||.++|+.|+||+|||+|+++ +++..+...
T Consensus 1 vi~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~~~------------------------------ 50 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWRGP------------------------------ 50 (169)
T ss_pred CEEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHhCc------------------------------
Confidence 5899999999999999999999999999999999999997 333221000
Q ss_pred HhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCChhHHH
Q 015096 169 RNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHTLR 248 (413)
Q Consensus 169 ~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~~~l~ 248 (413)
... ..+.+++....+++||||||||||......
T Consensus 51 ------------------------------------------~~~-----~~l~~~~~~~~~~~yD~VIiD~pp~~~~~~ 83 (169)
T cd02037 51 ------------------------------------------MKM-----GAIKQFLTDVDWGELDYLVIDMPPGTGDEH 83 (169)
T ss_pred ------------------------------------------chH-----HHHHHHHHHhhcCCCCEEEEeCCCCCcHHH
Confidence 000 011122222223579999999999532110
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcccHH
Q 015096 249 LLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVS 328 (413)
Q Consensus 249 ~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~~~~~ 328 (413)
.. .+.....+.+++|++|+..++.
T Consensus 84 ~~--------------------------------------------------------~~~~~~ad~viiV~~p~~~s~~ 107 (169)
T cd02037 84 LT--------------------------------------------------------LAQSLPIDGAVIVTTPQEVALD 107 (169)
T ss_pred HH--------------------------------------------------------HHhccCCCeEEEEECCchhhHH
Confidence 00 0000123589999999999999
Q ss_pred HHHHHHHHHHhCCCCCCeEEEecccCCCCCchHHHHHHHHH-HHHHHHHhHhcCCCCCCceEEecC
Q 015096 329 ESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKD-QMRALEMIKSDSELSSLMLIEAPL 393 (413)
Q Consensus 329 ~~~r~~~~l~~~g~~~~gvVvN~v~p~~~~~~~~~~~~~~~-q~~~l~~i~~~~~~~~~~~~~~P~ 393 (413)
++.++++.+++.+.++.|+|+||+.+. |..|..+... +.+.++.+.+ .+....+..+|+
T Consensus 108 ~~~~~~~~l~~~~~~~~gvv~N~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ip~ 167 (169)
T cd02037 108 DVRKAIDMFKKVNIPILGVVENMSYFV----CPHCGKKIYIFGKGGGEKLAE--ELGVPLLGKIPL 167 (169)
T ss_pred HHHHHHHHHHhcCCCeEEEEEcCCccc----CCCCCCcccccCCccHHHHHH--HcCCCEEEeccC
Confidence 999999999999999999999998764 2234333322 4455555555 234445555564
No 12
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.91 E-value=1.1e-23 Score=193.40 Aligned_cols=177 Identities=20% Similarity=0.247 Sum_probs=119.0
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhhcccc-CCccccccCCCCCeeeeccChHHH
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDLT-GGQLVPVEGPDFPLFALEINPEKA 164 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg~~~~-~~~~~~v~~~~~~l~~~~~d~~~~ 164 (413)
.+++|+|+|+|||+||||+++|||.++|+.|+||++||+|++. +++..|+.+.. .+....+. .+.+.+..
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~~~~l~~~l~--------~~~~l~~~ 87 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLS--------GTTDLSDA 87 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCCCCCHHHHhc--------CCCCHHHh
Confidence 4789999999999999999999999999999999999999996 77777776531 11110000 01111111
Q ss_pred HHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCCh
Q 015096 165 REEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTG 244 (413)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~ 244 (413)
+. .....++..++.+. ..+.+.+.+....+.+++... +.+||||||||||.+
T Consensus 88 i~-------~~~~~~l~~l~~g~--------------------~~~~~~~~l~~~~l~~~l~~l-~~~yD~ViiD~pp~~ 139 (204)
T TIGR01007 88 IC-------DTNIENLFVITSGP--------------------VPPNPTELLQSSNFKTLIETL-RKYFDYIIIDTPPIG 139 (204)
T ss_pred cc-------cCCCCCEEEEeCCC--------------------CCCCHHHHhCcHHHHHHHHHH-HhcCCEEEEeCCCcc
Confidence 10 01112344333221 133444444455666666653 457999999999943
Q ss_pred hHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCc
Q 015096 245 HTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTV 324 (413)
Q Consensus 245 ~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~ 324 (413)
...+...+ .. ..+.+++|+.|+.
T Consensus 140 ~~~~~~~~-------------------------------------------------------~~--~~D~vilV~~~~~ 162 (204)
T TIGR01007 140 TVTDAAII-------------------------------------------------------AR--ACDASILVTDAGE 162 (204)
T ss_pred ccchHHHH-------------------------------------------------------HH--hCCeEEEEEECCC
Confidence 22110000 00 1358999999999
Q ss_pred ccHHHHHHHHHHHHhCCCCCCeEEEecccCCC
Q 015096 325 MAVSESSRLSESLKKENVPVKRLIVNQIIPPS 356 (413)
Q Consensus 325 ~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~~ 356 (413)
.+..++.++++.+++.|.++.|+|+|++....
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 163 IKKRDVQKAKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEEeCccccc
Confidence 99999999999999999999999999987653
No 13
>CHL00175 minD septum-site determining protein; Validated
Probab=99.90 E-value=3.8e-24 Score=206.00 Aligned_cols=233 Identities=16% Similarity=0.153 Sum_probs=135.1
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC-CCcchHhhccccCCccccccCCCCCeeeeccChHHHH
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAR 165 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~-~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~~ 165 (413)
.+++|+|+|+||||||||+|+|||.+|++.|+||++||+|++ ++++.+||.+... .. .+.. +.......+..+
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~-~~-~~~d----~l~~~~~l~~~~ 87 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRV-LY-TAMD----VLEGECRLDQAL 87 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCC-CC-CHHH----HHcCCCChhhhe
Confidence 458999999999999999999999999999999999999998 6999999986421 10 0000 000000111110
Q ss_pred HHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCChh
Q 015096 166 EEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGH 245 (413)
Q Consensus 166 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~~ 245 (413)
.. .....++..++.+.... ........+.+++.......||||||||||..+
T Consensus 88 ~~------~~~~~~l~~l~~~~~~~----------------------~~~~~~~~l~~~l~~l~~~~yD~VIiDtpp~~~ 139 (281)
T CHL00175 88 IR------DKRWKNLSLLAISKNRQ----------------------RYNVTRKNMNMLVDSLKNRGYDYILIDCPAGID 139 (281)
T ss_pred ee------cCCCCCeEEEeCCCchh----------------------hccCCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence 00 01123344443321110 000112234444443222269999999999543
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcc
Q 015096 246 TLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVM 325 (413)
Q Consensus 246 ~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~~ 325 (413)
..... .+. ..+.+++|++|+..
T Consensus 140 ~~~~~--------------------------------------------------------~l~--~aD~viiV~~p~~~ 161 (281)
T CHL00175 140 VGFIN--------------------------------------------------------AIA--PAQEAIVVTTPEIT 161 (281)
T ss_pred HHHHH--------------------------------------------------------HHH--hcCeeEEEcCCChH
Confidence 21100 010 12479999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCeEEEecccCCCCCchH--HHH-HHHHHHHHHHHHhHhcCCCCCCceEEecCCCCCCCC--
Q 015096 326 AVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCK--FCA-MKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRG-- 400 (413)
Q Consensus 326 ~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~~~~~~~--~~~-~~~~~q~~~l~~i~~~~~~~~~~~~~~P~~~~e~~g-- 400 (413)
++..+.++++.+++.+....++|+|++.+....... ... .....+...++.|+++..+........|+....|..
T Consensus 162 si~~~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Ip~d~~v~~a~~~g~~~~~~~~~~~~ 241 (281)
T CHL00175 162 AIRDADRVAGLLEANGIYNVKLLVNRVRPDMIQANDMMSVRDVQEMLGIPLLGAIPEDENVIISTNRGEPLVLNKKLTLS 241 (281)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEeccChhhhhhhccccHHHHHHHhCCCeEEEccCCHhHHHHHHcCCceEeCCCCCHH
Confidence 999999999999999888889999998765211000 000 001112234555666544443334444554444433
Q ss_pred HHHHHHHHHHh
Q 015096 401 VPALRFMGDII 411 (413)
Q Consensus 401 ~~~L~~l~~~~ 411 (413)
..+++.|++.|
T Consensus 242 ~~~~~~la~~l 252 (281)
T CHL00175 242 GIAFENAARRL 252 (281)
T ss_pred HHHHHHHHHHH
Confidence 24555666554
No 14
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=99.90 E-value=1.7e-23 Score=197.41 Aligned_cols=229 Identities=21% Similarity=0.245 Sum_probs=138.6
Q ss_pred CcEEEEEeCCCcchhhHHHHHH-HHHHHHCCCCEEEEecCCC-CCcchHhhccccCC-ccccccCCCCCeeeeccChHHH
Q 015096 88 QRKYYMLGGKGGVGKTSCAASL-AVKFANNGHPTLVVSTDPA-HSLSDSFAQDLTGG-QLVPVEGPDFPLFALEINPEKA 164 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~L-A~~lA~~G~rVLlvD~D~~-~~l~~~lg~~~~~~-~~~~v~~~~~~l~~~~~d~~~~ 164 (413)
+++|+|+||||||||||+++|| |..++.+|++|++||+|+. +|++..||...... ....+.+ +.+.+..
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~--------~~~~~Di 73 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAG--------EASIEDI 73 (262)
T ss_pred CEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhC--------CCCHhHe
Confidence 4799999999999999999999 5555567778899999999 59999999986432 1111111 1222221
Q ss_pred HHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCCh
Q 015096 165 REEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTG 244 (413)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~ 244 (413)
.. .....++..++++.+...+.. +..+++..++.. ....|||||+||||..
T Consensus 74 ~~-------~~~~~gl~vipg~~~~~~~~~---------------------~~~~~~~~~~~~-l~~~~D~iliD~~aGl 124 (262)
T COG0455 74 IY-------ETPQDGLYVLPGGSGLEDLAK---------------------LDPEDLEDVIKE-LEELYDYILIDTGAGL 124 (262)
T ss_pred ee-------ecCcCCEEEeeCCCChHHHhh---------------------cCHHHHHHHHHH-HHhcCCEEEEeCCCCc
Confidence 11 122256777776655443311 112333334433 2345799999999943
Q ss_pred hHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCc
Q 015096 245 HTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTV 324 (413)
Q Consensus 245 ~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~ 324 (413)
+--. + ...+. .+.+++|++|+.
T Consensus 125 ~~~~-~------------------------------------------------------~~~~~---sd~~viVt~pe~ 146 (262)
T COG0455 125 SRDT-L------------------------------------------------------SFILS---SDELVIVTTPEP 146 (262)
T ss_pred cHHH-H------------------------------------------------------HHHHh---cCcEEEEeCCCc
Confidence 3210 0 00111 147999999999
Q ss_pred ccHHHHHHHHHHHHhCCCCCCe--EEEecccCCCCCchH-HHHHHHHHHHHHHHHhHhcCCCCCCceEEecCCCCCCCC-
Q 015096 325 MAVSESSRLSESLKKENVPVKR--LIVNQIIPPSASDCK-FCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRG- 400 (413)
Q Consensus 325 ~~~~~~~r~~~~l~~~g~~~~g--vVvN~v~p~~~~~~~-~~~~~~~~q~~~l~~i~~~~~~~~~~~~~~P~~~~e~~g- 400 (413)
.++.++..+++.+...+.+..+ +|+||+.+..+.... ....+...|...++.+++++++......+.|.....|+.
T Consensus 147 ~si~~A~~~i~~~~~~~~~~~~~~vV~N~v~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~~v~~a~~~g~p~~~~~p~s~ 226 (262)
T COG0455 147 TSITDAYKTIKILSKLGLDLLGRRVVLNRVRSTKEGVDVAALLIQVVKQVPVLQVIPFDPEVRRALAEGKPIVLYSPNSK 226 (262)
T ss_pred chHHHHHHHHHHHHHcCCccccceEEEEecccccchhHHHHHHHHHHHhCCceeEeccChHHHHHhhcCCcEEEeCCCCH
Confidence 9999999999999999999888 999999854432211 112222233334455555542222223333444333333
Q ss_pred -HHHHHHHHHHh
Q 015096 401 -VPALRFMGDII 411 (413)
Q Consensus 401 -~~~L~~l~~~~ 411 (413)
-.++.++++.+
T Consensus 227 as~ai~~lA~~l 238 (262)
T COG0455 227 ASQAIKELAAKL 238 (262)
T ss_pred HHHHHHHHHHHH
Confidence 34455666544
No 15
>PRK11519 tyrosine kinase; Provisional
Probab=99.90 E-value=1.2e-23 Score=226.37 Aligned_cols=194 Identities=16% Similarity=0.200 Sum_probs=144.3
Q ss_pred cccCCcccCCchhhhhc-----CCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhhccccCC
Q 015096 69 AVAAPSEAVSGFDEMVA-----GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDLTGG 142 (413)
Q Consensus 69 ~~~~~~~~~~~~~~~~~-----~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg~~~~~~ 142 (413)
+.+..+|++++++..+. ...++|+|+|.+||+||||+|+|||.++|..|+||||||+|+++ +++..||.+...|
T Consensus 502 p~s~~~Ea~r~lrt~l~~~~~~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~g 581 (719)
T PRK11519 502 PTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNG 581 (719)
T ss_pred CCCHHHHHHHHHHHHhhhhccCCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCC
Confidence 33445677777765543 35689999999999999999999999999999999999999995 8999999875444
Q ss_pred ccccccCCCCCeeeeccChHHHHHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHH
Q 015096 143 QLVPVEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVI 222 (413)
Q Consensus 143 ~~~~v~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~ 222 (413)
....+.+ ..+.+..+. .....+++.++.+ ..+|++.+++...++.
T Consensus 582 l~~~l~~--------~~~l~~~i~-------~~~~~~l~~lp~g--------------------~~~~~~~ell~s~~~~ 626 (719)
T PRK11519 582 LSDILIG--------QGDITTAAK-------PTSIANFDLIPRG--------------------QVPPNPSELLMSERFA 626 (719)
T ss_pred HHHHhCC--------CCCHHHhec-------ccCcCCEEEEeCC--------------------CCCCCHHHHhhHHHHH
Confidence 3322221 112222211 1222455555543 2367788888889999
Q ss_pred HHHHhcccCCccEEEEcCCCChhHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHH
Q 015096 223 QFLESQEYSMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMV 302 (413)
Q Consensus 223 ~~l~~~~~~~yD~IViDtpP~~~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 302 (413)
+++.. ...+||||||||||.....+...+..
T Consensus 627 ~ll~~-l~~~yD~ViiDtpP~~~v~Da~~l~~------------------------------------------------ 657 (719)
T PRK11519 627 ELVNW-ASKNYDLVLIDTPPILAVTDAAIVGR------------------------------------------------ 657 (719)
T ss_pred HHHHH-HHhcCCEEEEeCCCcccchHHHHHHH------------------------------------------------
Confidence 99886 45679999999999765544332222
Q ss_pred HHHHHhcCCCCceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 303 KVRELFRDTDSTEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 303 ~~~~~l~d~~~t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
..+.+++|+.++.++..++..+++.+++.|+++.|+|+|++...
T Consensus 658 ---------~~d~~l~Vvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~v~~~ 701 (719)
T PRK11519 658 ---------HVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 701 (719)
T ss_pred ---------HCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 13489999999999999999999999999999999999999543
No 16
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=99.89 E-value=1e-23 Score=199.18 Aligned_cols=172 Identities=20% Similarity=0.255 Sum_probs=112.0
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC-CCcchHhhccccCCccccccCCCCCeeeeccChHHHHHH
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREE 167 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~-~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~~~~ 167 (413)
++|+|+|+||||||||+|+|||.+||++|+||++||+|++ ++++.+||.+........+ .....+. .+
T Consensus 1 ~ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~----~~ 69 (251)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKPVTLHDV-------LAGEADI----KD 69 (251)
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCCCCHHHH-------hcCCCCH----HH
Confidence 4899999999999999999999999999999999999997 5999999876421111110 0000111 11
Q ss_pred HHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCChhHH
Q 015096 168 FRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHTL 247 (413)
Q Consensus 168 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~~~l 247 (413)
. .. ....++..++.+...... +......+.+.+.. ..+.||||||||||.....
T Consensus 70 ~---~~-~~~~~l~~lp~~~~~~~~---------------------~~~~~~~l~~~l~~-l~~~yD~VIiD~p~~~~~~ 123 (251)
T TIGR01969 70 A---IY-EGPFGVKVIPAGVSLEGL---------------------RKADPDKLEDVLKE-IIDDTDFLLIDAPAGLERD 123 (251)
T ss_pred h---eE-eCCCCEEEEeCCCCHHHH---------------------hhcCHHHHHHHHHH-HHhhCCEEEEeCCCccCHH
Confidence 1 00 112234444433221110 00112234444544 2346999999999954321
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcccH
Q 015096 248 RLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAV 327 (413)
Q Consensus 248 ~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~~~~ 327 (413)
... .+. ..+.+++|++|+..++
T Consensus 124 ~~~--------------------------------------------------------~l~--~ad~vliv~~~~~~s~ 145 (251)
T TIGR01969 124 AVT--------------------------------------------------------ALA--AADELLLVVNPEISSI 145 (251)
T ss_pred HHH--------------------------------------------------------HHH--hCCeEEEEECCCCchH
Confidence 000 011 1247999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 328 SESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 328 ~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
.++.++.+.++..+.+..++|+|++.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 146 TDALKTKIVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred HHHHHHHHHHHhcCCceEEEEEECCCch
Confidence 9999999888888998889999998764
No 17
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.89 E-value=4.2e-23 Score=224.11 Aligned_cols=194 Identities=16% Similarity=0.170 Sum_probs=140.3
Q ss_pred cccCCcccCCchhhhhc-----CCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhhccccCC
Q 015096 69 AVAAPSEAVSGFDEMVA-----GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDLTGG 142 (413)
Q Consensus 69 ~~~~~~~~~~~~~~~~~-----~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg~~~~~~ 142 (413)
+.+...|+++.++..+. ...++|.|+|.|||+||||+|+|||.+||+.|+||||||+|+++ +++.+||.+...|
T Consensus 522 p~s~~~Ea~r~lr~~l~~~~~~~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~g 601 (754)
T TIGR01005 522 PRPVAEEELRVKEEAVAEAKSVAEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSG 601 (754)
T ss_pred CCCcchHHHHHHHHHHhhhccCCCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCC
Confidence 44555777777765553 45689999999999999999999999999999999999999995 8999999865433
Q ss_pred ccccccCCCCCeeeeccChHHHHHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHH
Q 015096 143 QLVPVEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVI 222 (413)
Q Consensus 143 ~~~~v~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~ 222 (413)
....+.+ ..+.+..+ ......+++.++++. .++++.+++...++.
T Consensus 602 l~~~l~~--------~~~~~~~i-------~~~~~~~l~~l~~g~--------------------~~~~~~~ll~~~~~~ 646 (754)
T TIGR01005 602 LLDLLAG--------LRSLLLDL-------TASGAASLPMLDSGL--------------------FPHGITELLASPAMF 646 (754)
T ss_pred hHHHHcC--------CccHHHHh-------ccCCCCCeeEecCCC--------------------CCCCHHHHhccHHHH
Confidence 3222221 11111111 112234555554431 145566666667777
Q ss_pred HHHHhcccCCccEEEEcCCCChhHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHH
Q 015096 223 QFLESQEYSMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMV 302 (413)
Q Consensus 223 ~~l~~~~~~~yD~IViDtpP~~~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 302 (413)
+++.. .+++||||||||||.....+...+..
T Consensus 647 ~~l~~-l~~~yD~IiID~pp~~~~~d~~~l~~------------------------------------------------ 677 (754)
T TIGR01005 647 SLVIH-ARLYSDCVVVDVGTADPVRDMRAAAR------------------------------------------------ 677 (754)
T ss_pred HHHHH-HHhhCCEEEEcCCCcchhHHHHHhhh------------------------------------------------
Confidence 77776 45679999999999665444332211
Q ss_pred HHHHHhcCCCCceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 303 KVRELFRDTDSTEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 303 ~~~~~l~d~~~t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
..+.+++|+.++.++...+.+.++.++..|.++.|+|+|++.+.
T Consensus 678 ---------~~D~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~~~ 721 (754)
T TIGR01005 678 ---------LAIIMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNMLDPN 721 (754)
T ss_pred ---------hCCeEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCCChh
Confidence 13478999999999999999999999999999999999998665
No 18
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=99.89 E-value=1.7e-23 Score=186.23 Aligned_cols=203 Identities=17% Similarity=0.189 Sum_probs=129.1
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC-CCcchHhhccccCCccccccCCCCCeeeeccChHHHHH
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKARE 166 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~-~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~~~ 166 (413)
.++|+|+||||||||||+++|++.+||+.|+||++||+|.. +||...+|++.. ....+- ++...++...+++-
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~R--iVYd~v----dVi~g~~~l~QALI 75 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENR--IVYDLV----DVIEGEATLNQALI 75 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccce--eeeeeh----hhhcCccchhhHhh
Confidence 37899999999999999999999999999999999999998 799999999863 111100 01111223333321
Q ss_pred HHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCChhH
Q 015096 167 EFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHT 246 (413)
Q Consensus 167 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~~~ 246 (413)
. .....++..++++... -.+.+..+.+..++++.....|||||+|||+..+.
T Consensus 76 k------DKr~~nL~lLPAsQtr----------------------dKdalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~ 127 (272)
T COG2894 76 K------DKRLENLFLLPASQTR----------------------DKDALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQ 127 (272)
T ss_pred c------cccCCceEeccccccc----------------------CcccCCHHHHHHHHHHHHhcCCCEEEecCcchHHH
Confidence 1 1122344444443211 12234455566666654336799999999995443
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccc
Q 015096 247 LRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMA 326 (413)
Q Consensus 247 l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~~~ 326 (413)
=-.+. +. .++..++||+||..+
T Consensus 128 G~~~A--------------------------------------------------------~~--~Ad~AiVVtnPEvSs 149 (272)
T COG2894 128 GFKNA--------------------------------------------------------VY--FADEAIVVTNPEVSS 149 (272)
T ss_pred HHHhh--------------------------------------------------------hh--ccceEEEEcCCCccc
Confidence 11110 00 124789999999999
Q ss_pred HHHHHHHHHHHHhCC----CCC---CeEEEecccCCCCCchHHHHH---HHHHHHHHHHHhHhcCC
Q 015096 327 VSESSRLSESLKKEN----VPV---KRLIVNQIIPPSASDCKFCAM---KRKDQMRALEMIKSDSE 382 (413)
Q Consensus 327 ~~~~~r~~~~l~~~g----~~~---~gvVvN~v~p~~~~~~~~~~~---~~~~q~~~l~~i~~~~~ 382 (413)
++++.|.+..|...+ ..- ..+++||..|.--...+.+.. ..-...+.++.||++.+
T Consensus 150 VRDsDRiiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~GeMlsv~Dv~~iL~i~liGiiPed~~ 215 (272)
T COG2894 150 VRDSDRIIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRGEMLSVEDVLEILSIPLIGVIPEDQD 215 (272)
T ss_pred cccchhheeehhcccchhhcCCcccceEEEEccCHHHhccCCcccHHHHHHHhCCceEEeecCchh
Confidence 999999999998876 332 589999988763211111111 11233456667777633
No 19
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.89 E-value=1.3e-22 Score=186.74 Aligned_cols=171 Identities=17% Similarity=0.173 Sum_probs=113.3
Q ss_pred CCCcEEEEEeCCCcchhhHHHHHHHHHHHH-CCCCEEEEecCCCC-CcchHhhccccCCccccccCCCCCeeeeccChHH
Q 015096 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPAH-SLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEK 163 (413)
Q Consensus 86 ~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~-~G~rVLlvD~D~~~-~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~ 163 (413)
+.+++|+|+|+|||+||||+|+|||.+||+ .|+||||||+|+++ +++..||.+...+....+.+. ..+
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~--- 102 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDP-------VLD--- 102 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCCCCCHHHHHcCC-------CCC---
Confidence 356899999999999999999999999997 69999999999996 899989876532211111110 001
Q ss_pred HHHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCc--cEEEEcCC
Q 015096 164 AREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMF--TRIVFDTA 241 (413)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~y--D~IViDtp 241 (413)
+.+.. ......++..++.+.. .....+.....++.+++.. ..++| ||||||||
T Consensus 103 -l~~~i---~~~~~~~l~vl~~g~~--------------------~~~~~~~~~~~~l~~~l~~-l~~~y~~D~IiiD~p 157 (207)
T TIGR03018 103 -LADVL---VPTNIGRLSLLPAGRR--------------------HPNPTELLASQRMRSLLHE-LARRYPDRIIIIDTP 157 (207)
T ss_pred -HHHHh---ccCCCCCEEEEeCCCC--------------------CCCHHHHhCcHHHHHHHHH-HHhhCCCCEEEEECC
Confidence 11111 1111234444443211 2223333444556666655 23446 99999999
Q ss_pred CChhHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEc
Q 015096 242 PTGHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTI 321 (413)
Q Consensus 242 P~~~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~ 321 (413)
|.........+. . ..+.+++|+.
T Consensus 158 p~~~~~~~~~l~-------------------------------------------------------~--~aD~viiV~~ 180 (207)
T TIGR03018 158 PLLVFSEARALA-------------------------------------------------------R--LVGQIVLVVE 180 (207)
T ss_pred CCcchhHHHHHH-------------------------------------------------------H--hCCEEEEEEE
Confidence 954321111000 0 1358999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCeEEEe
Q 015096 322 PTVMAVSESSRLSESLKKENVPVKRLIVN 350 (413)
Q Consensus 322 p~~~~~~~~~r~~~~l~~~g~~~~gvVvN 350 (413)
++..+...+.++++.++ +.++.|+|+|
T Consensus 181 ~~~~~~~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 181 EGRTTQEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred CCCCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence 99999999999999999 7789999998
No 20
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.88 E-value=2e-22 Score=189.88 Aligned_cols=52 Identities=37% Similarity=0.537 Sum_probs=48.9
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccc
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDL 139 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~ 139 (413)
|++|+|+|+||||||||+|+|||..||++|+|||+||+|++++++..||.+.
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~l~~~~~~~~ 52 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNLLRLHFGMDW 52 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcchHHHHhCCCC
Confidence 4789999999999999999999999999999999999999999999998764
No 21
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.88 E-value=1.1e-22 Score=219.13 Aligned_cols=195 Identities=19% Similarity=0.218 Sum_probs=143.3
Q ss_pred ccccCCcccCCchhhhhc-----CCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhhccccC
Q 015096 68 RAVAAPSEAVSGFDEMVA-----GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDLTG 141 (413)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~-----~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg~~~~~ 141 (413)
.+.++.+|++++++..+. ...++|+|+|.+||+||||+|+|||.++|..|+||||||+|+++ +++..|+.....
T Consensus 506 ~p~s~~~Ea~r~lrt~l~~~~~~~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~ 585 (726)
T PRK09841 506 NPADSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEH 585 (726)
T ss_pred CCCCHHHHHHHHHHHHhhhhccCCCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCC
Confidence 344455677777776442 46689999999999999999999999999999999999999995 899999876543
Q ss_pred CccccccCCCCCeeeeccChHHHHHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHH
Q 015096 142 GQLVPVEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKV 221 (413)
Q Consensus 142 ~~~~~v~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l 221 (413)
|....+.+ ..+.+..+. .....+++.++.+ ..++++.+++...++
T Consensus 586 gl~~~l~~--------~~~~~~~i~-------~~~~~~l~vl~~g--------------------~~~~~p~ell~~~~~ 630 (726)
T PRK09841 586 GLSEYLAG--------KDELNKVIQ-------HFGKGGFDVITRG--------------------QVPPNPSELLMRDRM 630 (726)
T ss_pred CHHHHhCC--------CCCHHHhee-------ccCCCCEEEEeCC--------------------CCCCCHHHHhCcHHH
Confidence 33322222 112222211 1222345555443 236778888888889
Q ss_pred HHHHHhcccCCccEEEEcCCCChhHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHH
Q 015096 222 IQFLESQEYSMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERM 301 (413)
Q Consensus 222 ~~~l~~~~~~~yD~IViDtpP~~~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~ 301 (413)
.+++.. .+++||||||||||.....+...+..
T Consensus 631 ~~ll~~-l~~~yD~IIIDtPP~~~~~Da~~la~----------------------------------------------- 662 (726)
T PRK09841 631 RQLLEW-ANDHYDLVIVDTPPMLAVSDAAVVGR----------------------------------------------- 662 (726)
T ss_pred HHHHHH-HHhcCCEEEEeCCCccccchHHHHHH-----------------------------------------------
Confidence 888876 45679999999999655433222111
Q ss_pred HHHHHHhcCCCCceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 302 VKVRELFRDTDSTEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 302 ~~~~~~l~d~~~t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
..+++++|++++.++..++.+.++.+++.|.++.|+|+|++.+.
T Consensus 663 ----------~ad~~llVvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~~~~~ 706 (726)
T PRK09841 663 ----------SVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 706 (726)
T ss_pred ----------hCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCceEEEEEeCcccC
Confidence 13479999999999999999999999999999999999998654
No 22
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.88 E-value=3.7e-23 Score=197.72 Aligned_cols=47 Identities=32% Similarity=0.584 Sum_probs=43.4
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhc
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQ 137 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~ 137 (413)
+|+|. |||||||||+|+|||.+||++|+|||+||+||+++++..|+.
T Consensus 2 ~i~~~-gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~~~~l~~ 48 (268)
T TIGR01281 2 ILAVY-GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDSTFTLTG 48 (268)
T ss_pred EEEEE-cCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccccceecC
Confidence 57777 899999999999999999999999999999999998888863
No 23
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.88 E-value=1.3e-22 Score=196.37 Aligned_cols=239 Identities=16% Similarity=0.154 Sum_probs=134.6
Q ss_pred CCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhhccccCCccccc-cCCCCCeeeeccChHH
Q 015096 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDLTGGQLVPV-EGPDFPLFALEINPEK 163 (413)
Q Consensus 86 ~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg~~~~~~~~~~v-~~~~~~l~~~~~d~~~ 163 (413)
.++++|.| +|||||||||+|+|||..||++|+|||+||+||++ +...++|.... .....+ .+. ...++ .
T Consensus 4 ~~~~~~~~-~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~~~~~~-~tl~d~~~~~------~~~~~-~ 74 (296)
T PRK13236 4 ENIRQIAF-YGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQ-TTVLHLAAER------GAVED-L 74 (296)
T ss_pred cCceEEEE-ECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCccchhccCCCC-CCHHHHHHhc------CCccC-C
Confidence 35677777 88999999999999999999999999999999997 55555554321 111111 000 00011 1
Q ss_pred HHHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCC
Q 015096 164 AREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPT 243 (413)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~ 243 (413)
.+++.. .....+++.++++..... . ...|..... .+..+.....++.||||+|||++.
T Consensus 75 ~l~~~i----~~~~~gv~llpa~~~~~~------------~---~~~~~~~~~---~l~~~~~~~~~~~yD~vliD~~~~ 132 (296)
T PRK13236 75 ELHEVM----LTGFRGVKCVESGGPEPG------------V---GCAGRGIIT---AINFLEENGAYQDLDFVSYDVLGD 132 (296)
T ss_pred CHHHhh----eeCCCCeEEEECCCCCCC------------C---CCcceeehh---hhHHHHhcCccccCCEEEEecccc
Confidence 122221 133346666665421110 0 011222222 233333334567899999999642
Q ss_pred hhHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCC
Q 015096 244 GHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPT 323 (413)
Q Consensus 244 ~~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~ 323 (413)
.. ...+..+-.+ ..++.+++|++|+
T Consensus 133 ~~-~~~~~~~~~l------------------------------------------------------~aAD~vIIvttpe 157 (296)
T PRK13236 133 VV-CGGFAMPIRE------------------------------------------------------GKAQEIYIVTSGE 157 (296)
T ss_pred ce-eccccccchh------------------------------------------------------ccCCEEEEecCcc
Confidence 11 1111110000 0235899999999
Q ss_pred cccHHHHHHHHH----HHHhCCCCCCeEEEecccCCCCCchHHHHH-HHHHHHHHHHHhHhcCCCCCCceEEecCCCCCC
Q 015096 324 VMAVSESSRLSE----SLKKENVPVKRLIVNQIIPPSASDCKFCAM-KRKDQMRALEMIKSDSELSSLMLIEAPLVDVEI 398 (413)
Q Consensus 324 ~~~~~~~~r~~~----~l~~~g~~~~gvVvN~v~p~~~~~~~~~~~-~~~~q~~~l~~i~~~~~~~~~~~~~~P~~~~e~ 398 (413)
..++..+.++++ ..+..++++.|+|+||... ......... +...+...+..|+++..+......+.|.+...|
T Consensus 158 ~~sl~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~~~--~~~~~ile~l~~~~g~~vl~~Ip~~~~v~eA~~~~~Pv~~~~p 235 (296)
T PRK13236 158 MMAMYAANNIARGILKYAHTGGVRLGGLICNSRNV--DREIELIETLAKRLNTQMIHFVPRDNIVQHAELRRMTVNEYAP 235 (296)
T ss_pred hHHHHHHHHHHHHHHHHhhCCCceeEEEEecCCCC--cchHHHHHHHHHHhCccceeeCCCChHHHHHHHcCCChhhcCC
Confidence 999988875544 3334578888999998421 111111111 112233456667777666666667778877766
Q ss_pred CC--HHHHHHHHHHhh
Q 015096 399 RG--VPALRFMGDIIW 412 (413)
Q Consensus 399 ~g--~~~L~~l~~~~~ 412 (413)
.. ..++..|++.|.
T Consensus 236 ~s~~a~~y~~La~ell 251 (296)
T PRK13236 236 DSNQGNEYRALAKKII 251 (296)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 55 344566766653
No 24
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.88 E-value=9.1e-23 Score=194.97 Aligned_cols=48 Identities=29% Similarity=0.553 Sum_probs=43.6
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhc
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQ 137 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~ 137 (413)
++|+|+ |||||||||+|+|||.+||++|+|||+||+||+++++..|+.
T Consensus 1 ~~i~v~-gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~~~~l~~ 48 (267)
T cd02032 1 MVLAVY-GKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTLTG 48 (267)
T ss_pred CEEEEe-cCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCcceeccC
Confidence 357777 799999999999999999999999999999999988887764
No 25
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.88 E-value=1.2e-22 Score=192.78 Aligned_cols=175 Identities=20% Similarity=0.248 Sum_probs=111.8
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC-CCcchHhhccccCCccccccCCCCCeeeeccChHHHHH
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKARE 166 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~-~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~~~ 166 (413)
+++|+|+|+||||||||+|+|||.+||+.|+||++||+|++ ++++.+||.+... ...... +.....+.+..+.
T Consensus 1 ~~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~-~~~~~~-----~~~~~~~~~~~i~ 74 (261)
T TIGR01968 1 ARVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRI-VYTLVD-----VVEGECRLQQALI 74 (261)
T ss_pred CeEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcC-CCCHHH-----HhcCcCcHHHHhh
Confidence 37899999999999999999999999999999999999998 6999999876321 000000 0000111111111
Q ss_pred HHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCChhH
Q 015096 167 EFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHT 246 (413)
Q Consensus 167 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~~~ 246 (413)
. .....++..++.+.... .+......+.+++.. ..+.||||||||||....
T Consensus 75 ~------~~~~~~l~~l~~~~~~~----------------------~~~~~~~~l~~~l~~-l~~~~D~viiD~p~~~~~ 125 (261)
T TIGR01968 75 K------DKRLKNLYLLPASQTRD----------------------KDAVTPEQMKKLVNE-LKEEFDYVIIDCPAGIES 125 (261)
T ss_pred c------CCCCCCeEEEeCCCchh----------------------hhhCCHHHHHHHHHH-HHHhCCEEEEeCCCCcCH
Confidence 0 01112344433321110 011112233444443 234699999999995332
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccc
Q 015096 247 LRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMA 326 (413)
Q Consensus 247 l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~~~ 326 (413)
.-. ..+. ..+.+++|++|+..+
T Consensus 126 ~~~--------------------------------------------------------~~l~--~aD~viiv~~~~~~s 147 (261)
T TIGR01968 126 GFR--------------------------------------------------------NAVA--PADEAIVVTTPEVSA 147 (261)
T ss_pred HHH--------------------------------------------------------HHHH--hCCeEEEEcCCCcHH
Confidence 100 0011 124799999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 327 VSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 327 ~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
+..+.++++.++..+....++|+|++.+.
T Consensus 148 ~~~~~~~~~~l~~~~~~~~~iviN~~~~~ 176 (261)
T TIGR01968 148 VRDADRVIGLLEAKGIEKIHLIVNRLRPE 176 (261)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEeCcCch
Confidence 99999999999998877789999998764
No 26
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=99.88 E-value=6.4e-23 Score=196.68 Aligned_cols=238 Identities=15% Similarity=0.150 Sum_probs=128.0
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHh-hccccCCccccccCCCCCeeeeccChHHHHH
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSF-AQDLTGGQLVPVEGPDFPLFALEINPEKARE 166 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~l-g~~~~~~~~~~v~~~~~~l~~~~~d~~~~~~ 166 (413)
|++|+|+ |||||||||+|+|||.+||++|+||++||+||+++...+| |..........+.+.. ....+ +.
T Consensus 1 ~~~iav~-gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~~~l~g~~~~~~~~d~l~~~~----~~~~~----~~ 71 (273)
T PRK13232 1 MRQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEG----DEGVD----LD 71 (273)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccchhhcCCCCCCcHHHHHHhcC----CCCCC----HH
Confidence 4789999 9999999999999999999999999999999998666554 4321100000000000 00000 01
Q ss_pred HHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCChhH
Q 015096 167 EFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHT 246 (413)
Q Consensus 167 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~~~ 246 (413)
++ .. ....++..++++.... - ..-++.. ......+.+.+.. .++.|||||||||+...
T Consensus 72 ~~---i~-~~~~~i~~i~~~~~~~-------------~--~~~~~~~-~~~~~~l~~~l~~-~~~~yD~vlID~~~~~~- 129 (273)
T PRK13232 72 VV---MQ-PGFGDIKCVESGGPEP-------------G--VGCAGRG-IITSIGLLENLGA-YTDDLDYVFYDVLGDVV- 129 (273)
T ss_pred HE---EE-eCCCCeEEEeCCCCCC-------------C--CCCCCCc-hhHHHHHHHHccc-ccccCCEEEEecCCCee-
Confidence 10 00 1122344433321000 0 0011211 1222345555543 45679999999976321
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccc
Q 015096 247 LRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMA 326 (413)
Q Consensus 247 l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~~~ 326 (413)
...+..+-. +. ..+.+++|++|+..+
T Consensus 130 ~~~~~~~~a----------------------------------------------------l~--aad~vlip~~p~~~s 155 (273)
T PRK13232 130 CGGFAMPIR----------------------------------------------------EG--KAKEIYIVASGELMA 155 (273)
T ss_pred ECCEecccc----------------------------------------------------cc--ccceEEEecCchHHH
Confidence 111111100 00 235899999999999
Q ss_pred HHHHHHHHHHHHhC---CCCCCeEEEecccCCCCCchHHHHHHH-HHHHHHHHHhHhcCCCCCCceEEecCCCCCCC--C
Q 015096 327 VSESSRLSESLKKE---NVPVKRLIVNQIIPPSASDCKFCAMKR-KDQMRALEMIKSDSELSSLMLIEAPLVDVEIR--G 400 (413)
Q Consensus 327 ~~~~~r~~~~l~~~---g~~~~gvVvN~v~p~~~~~~~~~~~~~-~~q~~~l~~i~~~~~~~~~~~~~~P~~~~e~~--g 400 (413)
+..+.++++.++.. ++++.|+|+|+.... .......... ......+..|+.+..+........|.+...|. +
T Consensus 156 l~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~--~~~~~~e~l~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p~s~~ 233 (273)
T PRK13232 156 IYAANNICKGLAKFAKGGARLGGIICNSRNVD--GERELLEAFAKKLGSQLIHFVPRDNIVQRAEINRKTVIDFDPESNQ 233 (273)
T ss_pred HHHHHHHHHHHHHHhCCCCceeEEEEeCCCCC--ccHHHHHHHHHHhCCCeEEECCCCHHHHHHHHcCCCeEEeCCCChH
Confidence 99999998888864 677889999985321 1111111110 11112345566554443333444454444443 3
Q ss_pred HHHHHHHHHHhh
Q 015096 401 VPALRFMGDIIW 412 (413)
Q Consensus 401 ~~~L~~l~~~~~ 412 (413)
..+...+++.|.
T Consensus 234 a~~y~~La~el~ 245 (273)
T PRK13232 234 AKEYLTLAHNVQ 245 (273)
T ss_pred HHHHHHHHHHHH
Confidence 455667776653
No 27
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.87 E-value=2.1e-22 Score=192.66 Aligned_cols=48 Identities=29% Similarity=0.539 Sum_probs=44.8
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhc
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQ 137 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~ 137 (413)
++|+|. +||||||||+|+|||.+||++|+|||+||+||+++++.+++.
T Consensus 3 ~iIav~-~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~t~~l~~ 50 (270)
T PRK13185 3 LVLAVY-GKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDSTFTLTG 50 (270)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcchhhhhcC
Confidence 688887 799999999999999999999999999999999999988864
No 28
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.87 E-value=1.1e-21 Score=197.55 Aligned_cols=196 Identities=20% Similarity=0.234 Sum_probs=119.1
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccccCCccccccCCCCCeeeec-cC-hHHH
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALE-IN-PEKA 164 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~-~d-~~~~ 164 (413)
.+++|+|+|.||||||||+|+|||..||.+|+|||+||+|||++++.+||...... +.... .++... .+ ....
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~lt~~~g~~~~~~----~~~~~-tl~~~l~~~~~~~~ 194 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASLSALLGVLPETD----VGANE-TLYAAIRYDDTRRP 194 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHHHcCCCcccc----ccccc-cHHHHHhccccCCC
Confidence 45899999999999999999999999999999999999999999999998754210 00000 011100 00 0011
Q ss_pred HHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCCh
Q 015096 165 REEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTG 244 (413)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~ 244 (413)
+.+ .+..+...+++.++++..+..+...+.. .+. ... ..+......+.+.+... .+.||||||||||+.
T Consensus 195 ~~~---~i~~t~~~~ldliPa~~~l~~~e~~~~~----~~~-~~~--~~~~~~~~~L~~~L~~~-~~~yD~IiIDtpP~l 263 (405)
T PRK13869 195 LRD---VIRPTYFDGLHLVPGNLELMEFEHTTPK----ALS-DKG--TRDGLFFTRVAQAFDEV-ADDYDVVVIDCPPQL 263 (405)
T ss_pred HHH---heeccCCCCeeEecCCHHHHHHHHHhHH----HHh-hhc--ccchhHHHHHHHHHHHh-hccCCEEEEECCCch
Confidence 111 1222334567777776555433322110 000 000 01111223455666553 467999999999965
Q ss_pred hHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCc
Q 015096 245 HTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTV 324 (413)
Q Consensus 245 ~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~ 324 (413)
..+.... |. ..+.+++++.|+.
T Consensus 264 ~~~t~~a--------------------------------------------------------l~--aAd~viiPv~p~~ 285 (405)
T PRK13869 264 GFLTLSG--------------------------------------------------------LC--AATSMVITVHPQM 285 (405)
T ss_pred hHHHHHH--------------------------------------------------------HH--HcCEEEEecCCcH
Confidence 5422110 00 1257999999999
Q ss_pred ccHHHHHHHHHH-------HHhCC----CCCCeEEEecccCCC
Q 015096 325 MAVSESSRLSES-------LKKEN----VPVKRLIVNQIIPPS 356 (413)
Q Consensus 325 ~~~~~~~r~~~~-------l~~~g----~~~~gvVvN~v~p~~ 356 (413)
.++..+..+++. +++.+ +...++|+|++.+..
T Consensus 286 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~~ 328 (405)
T PRK13869 286 LDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQD 328 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCCC
Confidence 999998888863 23322 234589999987753
No 29
>PRK10037 cell division protein; Provisional
Probab=99.87 E-value=6e-22 Score=187.51 Aligned_cols=52 Identities=35% Similarity=0.423 Sum_probs=49.0
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccc
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDL 139 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~ 139 (413)
|++|+|.|.||||||||+|+|||..||++|+||||||+|+|++++..||.+.
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~~~s~~~g~~~ 52 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNLLRLSFNVDF 52 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhhhHHHHhCCCc
Confidence 5799999999999999999999999999999999999999999999998753
No 30
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.87 E-value=2.4e-22 Score=192.81 Aligned_cols=47 Identities=30% Similarity=0.521 Sum_probs=43.8
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHh
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSF 135 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~l 135 (413)
|++|+|+ +||||||||+|+|||.+||+.|+|||+||+|||++...++
T Consensus 1 m~~iav~-~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~t~~l 47 (274)
T PRK13235 1 MRKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLL 47 (274)
T ss_pred CCEEEEe-CCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccccccc
Confidence 4789999 8999999999999999999999999999999999877766
No 31
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.86 E-value=2.4e-22 Score=192.88 Aligned_cols=235 Identities=14% Similarity=0.180 Sum_probs=129.5
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHH-CCCCEEEEecCCCCCcchH-hhccccCCccccccCCCCCeeeeccC--h-H
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPAHSLSDS-FAQDLTGGQLVPVEGPDFPLFALEIN--P-E 162 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~-~G~rVLlvD~D~~~~l~~~-lg~~~~~~~~~~v~~~~~~l~~~~~d--~-~ 162 (413)
+++|+|+ +||||||||+|+|||.+||+ .|+|||+||+|||++++.+ +|...... ++....+ . .
T Consensus 2 ~~vIav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~~~~~~-----------l~~~l~~~~~~~ 69 (275)
T PRK13233 2 TRKIAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGKPQTT-----------MMDTLRELGEEK 69 (275)
T ss_pred ceEEEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCCCCCCc-----------HHHHHHHhCCCC
Confidence 3789999 89999999999999999997 5999999999999987775 56432110 1100000 0 0
Q ss_pred HHHHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCC
Q 015096 163 KAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAP 242 (413)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP 242 (413)
...++.. .+...+++.++++..+.. ...++... ....++.+.+.. ..++||||||||++
T Consensus 70 ~~~~~~~----~~~~~~l~~ipa~~~~~~---------------~~~~~~~~-~~~~~l~~~l~~-~~~~yD~iliD~~~ 128 (275)
T PRK13233 70 VTPDKVI----KTGFKDIRCVESGGPEPG---------------VGCAGRGV-ITAIDLMEENGA-YTDDLDFVFFDVLG 128 (275)
T ss_pred CCHHHHe----eeCCCCcEEEECCCCCCC---------------CCCCCcch-hHHHHHHHHcCC-ccCCCCEEEEecCC
Confidence 0011111 122234555554322110 00122121 111123344433 35679999999955
Q ss_pred ChhHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcC
Q 015096 243 TGHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIP 322 (413)
Q Consensus 243 ~~~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p 322 (413)
. .+...+..+ +.+...+.+++|+.|
T Consensus 129 ~-~~~~al~~~------------------------------------------------------~~~~aad~viIp~~p 153 (275)
T PRK13233 129 D-VVCGGFAMP------------------------------------------------------IRDGKAQEVYIVASG 153 (275)
T ss_pred c-eeecccccc------------------------------------------------------chhccCceEEEeccc
Confidence 2 121112111 001123579999999
Q ss_pred CcccHHHHHHHHHHH----HhCCCCCCeEEEecccCCCCCchHHHHHHHH-HHHHHHHHhHhcCCCCCCceEEecCCCCC
Q 015096 323 TVMAVSESSRLSESL----KKENVPVKRLIVNQIIPPSASDCKFCAMKRK-DQMRALEMIKSDSELSSLMLIEAPLVDVE 397 (413)
Q Consensus 323 ~~~~~~~~~r~~~~l----~~~g~~~~gvVvN~v~p~~~~~~~~~~~~~~-~q~~~l~~i~~~~~~~~~~~~~~P~~~~e 397 (413)
+..++..+.++++.+ +..++++.|+|+|+..... .........+ .....+..|+++..+........|.+..+
T Consensus 154 ~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~~~~--~~~~~e~l~~~~~~~~l~~Ip~~~~v~~A~~~g~pv~~~~ 231 (275)
T PRK13233 154 EMMAIYAANNICKGLVKYAEQSGVRLGGIICNSRNVDG--ELELLEEFTDAIGTQMIHFVPRDNIVQKAEFNKKTVVEFD 231 (275)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCCCCc--HHHHHHHHHHHcCCceeeecCcchHHHHHHHcCCCEEEEC
Confidence 999999999997666 3457888999999753221 1111111111 11124456666544444444444554444
Q ss_pred CC--CHHHHHHHHHHhh
Q 015096 398 IR--GVPALRFMGDIIW 412 (413)
Q Consensus 398 ~~--g~~~L~~l~~~~~ 412 (413)
+. +......+++.|.
T Consensus 232 ~~s~~a~~y~~La~ell 248 (275)
T PRK13233 232 PDCNQAKEYKELARKII 248 (275)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 43 3455667776653
No 32
>PHA02518 ParA-like protein; Provisional
Probab=99.86 E-value=2.6e-21 Score=177.94 Aligned_cols=50 Identities=36% Similarity=0.489 Sum_probs=46.7
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhcc
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQD 138 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~ 138 (413)
++|+|+|.||||||||+|+|||.+|+++|+||++||+|||+++..+++..
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~~~~ 50 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAR 50 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHHHhc
Confidence 58999999999999999999999999999999999999999988887653
No 33
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.86 E-value=6.6e-22 Score=189.27 Aligned_cols=52 Identities=33% Similarity=0.481 Sum_probs=48.7
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC-CCcchHhhccc
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQDL 139 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~-~~l~~~lg~~~ 139 (413)
+++|+|+|+||||||||+|+|||.+||++|++|++||+|++ ++++.+||.+.
T Consensus 2 ~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~ 54 (270)
T PRK10818 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCER 54 (270)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCc
Confidence 47999999999999999999999999999999999999998 59999998864
No 34
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.86 E-value=4.7e-21 Score=176.95 Aligned_cols=46 Identities=30% Similarity=0.558 Sum_probs=41.3
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHh
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSF 135 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~l 135 (413)
++|+|+ |||||||||+++|||.+||++|+|||+||+||+++....|
T Consensus 1 ~~iav~-gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~ 46 (212)
T cd02117 1 RQIAIY-GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLL 46 (212)
T ss_pred CEEEEE-CCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccc
Confidence 468888 6999999999999999999999999999999998666554
No 35
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.86 E-value=1.3e-21 Score=187.01 Aligned_cols=49 Identities=27% Similarity=0.522 Sum_probs=44.7
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhc
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQ 137 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~ 137 (413)
|++|+|. +||||||||+|+|||.+||++|+||++||+|||++++.+|+.
T Consensus 1 m~~iav~-~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~~~~~~ 49 (270)
T cd02040 1 MRQIAIY-GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLG 49 (270)
T ss_pred CcEEEEE-eCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCchhhhcC
Confidence 4688888 799999999999999999999999999999999988877653
No 36
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.86 E-value=8.1e-21 Score=190.78 Aligned_cols=54 Identities=35% Similarity=0.366 Sum_probs=50.4
Q ss_pred CCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccc
Q 015096 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDL 139 (413)
Q Consensus 86 ~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~ 139 (413)
..+++|+|+|.||||||||+|+|||.+||+.|+|||+||+|||++++.+||...
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~~ls~~~g~~~ 155 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQASLSALFGYQP 155 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHcCCCc
Confidence 356899999999999999999999999999999999999999999999998753
No 37
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.85 E-value=6.5e-22 Score=190.29 Aligned_cols=49 Identities=33% Similarity=0.645 Sum_probs=45.5
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhc
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQ 137 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~ 137 (413)
|++|+|+ |||||||||+|+|||.+||++|+||||||+|||+|++.+|+.
T Consensus 1 ~~~i~~~-gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~~l~~ 49 (279)
T PRK13230 1 MRKFCFY-GKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLVG 49 (279)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccccccC
Confidence 4688888 899999999999999999999999999999999998888864
No 38
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.85 E-value=7.8e-22 Score=190.29 Aligned_cols=230 Identities=16% Similarity=0.182 Sum_probs=127.1
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHh-hccccCCccccccCCCCCeeeeccChHHHHHHHH
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSF-AQDLTGGQLVPVEGPDFPLFALEINPEKAREEFR 169 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~l-g~~~~~~~~~~v~~~~~~l~~~~~d~~~~~~~~~ 169 (413)
|+|+ |||||||||+|+|||.+||+.|+|||+||+|||++++.++ |... ......+.+.. ......+++..
T Consensus 3 ia~~-gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~~l~g~~~-~~i~~~~~~~~--~~~~~~~~~~~----- 73 (290)
T CHL00072 3 LAVY-GKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLTGFLI-PTIIDTLQSKD--YHYEDVWPEDV----- 73 (290)
T ss_pred EEEE-CCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcccccccCcCC-CCHHHHHhhcc--cccccCChhhe-----
Confidence 5555 5999999999999999999999999999999999888876 3311 10000000000 00000111111
Q ss_pred hhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCChhHHHh
Q 015096 170 NVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHTLRL 249 (413)
Q Consensus 170 ~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~~~l~~ 249 (413)
+. ....+++.++++......... .....+ ...+.+.+.. .++|||||||||+......+
T Consensus 74 --i~-~~~~~l~lip~~~~~~~~~~~-------------~~~~~~---~~~ll~~l~~--~~~yD~IiIDt~~~l~~~a~ 132 (290)
T CHL00072 74 --IY-KGYGGVDCVEAGGPPAGAGCG-------------GYVVGE---TVKLLKELNA--FYEYDIILFDVLGDVVCGGF 132 (290)
T ss_pred --EE-eCCCCeEEEeCCCCCCccchh-------------hcccHH---HHHHHHHhhc--cccCCEEEEecCCcceechh
Confidence 11 112355555544332111000 000001 1122333332 24699999999773211000
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcccHHH
Q 015096 250 LSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVSE 329 (413)
Q Consensus 250 l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~~~~~~ 329 (413)
.. .+. .++.+++|+.|+..++..
T Consensus 133 ~a-------------------------------------------------------al~--~AD~viIp~~p~~~sl~~ 155 (290)
T CHL00072 133 AA-------------------------------------------------------PLN--YADYCIIITDNGFDALFA 155 (290)
T ss_pred hh-------------------------------------------------------hhh--cCCEEEEEecCCHHHHHH
Confidence 00 011 135899999999999999
Q ss_pred HHHHHHHHHhC----CCCCCeEEEecccCCCCCchHHHHHHHHHHHHHHHHhHhcCCCCCCceEEecCCCCCCCCH----
Q 015096 330 SSRLSESLKKE----NVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRGV---- 401 (413)
Q Consensus 330 ~~r~~~~l~~~----g~~~~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~~~~P~~~~e~~g~---- 401 (413)
+.++++.++.. +++..|+|+|++.... .............++.|+++..+........|.+...|.+.
T Consensus 156 ~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~~----~~~~~~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p~s~~~~~ 231 (290)
T CHL00072 156 ANRIAASVREKARTHPLRLAGLVGNRTSKRD----LIDKYVEACPMPVLEVLPLIEDIRVSRVKGKTLFEMVESEPSLNY 231 (290)
T ss_pred HHHHHHHHHHHhccCCCceEEEEEeCCCchh----HHHHHHHHcCCceEEECCCChHHHHHHhCCCceEEeCCCCcchhH
Confidence 99999888765 5667899999975321 11111111122345556665455555555566665566543
Q ss_pred --HHHHHHHHHh
Q 015096 402 --PALRFMGDII 411 (413)
Q Consensus 402 --~~L~~l~~~~ 411 (413)
.+...|++.|
T Consensus 232 ~a~~y~~La~el 243 (290)
T CHL00072 232 VCDYYLNIADQL 243 (290)
T ss_pred HHHHHHHHHHHH
Confidence 5566777665
No 39
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.84 E-value=1.5e-20 Score=168.76 Aligned_cols=154 Identities=20% Similarity=0.257 Sum_probs=100.0
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhhccccCCccccccCCCCCeeeeccChHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREEF 168 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~~~~~ 168 (413)
+|+|+|+||||||||+|+|||.+| +||+|||+|+++ +++.+||.+...+........ ....+.
T Consensus 1 ~I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~------- 64 (179)
T cd03110 1 QIAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIVGGK-----KAVIDP------- 64 (179)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcCCCccccccceecCC-----ceEEch-------
Confidence 489999999999999999999999 899999999995 999999987532110000000 000000
Q ss_pred HhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHh-cccCCccEEEEcCCCChhHH
Q 015096 169 RNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLES-QEYSMFTRIVFDTAPTGHTL 247 (413)
Q Consensus 169 ~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~-~~~~~yD~IViDtpP~~~~l 247 (413)
.... .+|... .....+.+.+.. ..+++||||||||||..+..
T Consensus 65 -----------~~~~-------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~d~viiDtpp~~~~~ 107 (179)
T cd03110 65 -----------ELCI-------------------------SCGLCG-KLVTEVRKHAKEIAKAEGAELIIIDGPPGIGCP 107 (179)
T ss_pred -----------hhhc-------------------------cccchH-HHHHHHHHHHHHhhhhcCCCEEEEECcCCCcHH
Confidence 0000 001000 011222222211 12457999999999954321
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcccH
Q 015096 248 RLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAV 327 (413)
Q Consensus 248 ~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~~~~ 327 (413)
. + ..+. ..+.+++|++|+..++
T Consensus 108 ~-~-------------------------------------------------------~~l~--~aD~vliv~~~~~~~~ 129 (179)
T cd03110 108 V-I-------------------------------------------------------ASLT--GADAALLVTEPTPSGL 129 (179)
T ss_pred H-H-------------------------------------------------------HHHH--cCCEEEEEecCCcccH
Confidence 0 0 0111 1358999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 328 SESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 328 ~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
..+.++++.+++.+.++ ++|+|++.+.
T Consensus 130 ~~~~~~~~~l~~~~~~~-~vV~N~~~~~ 156 (179)
T cd03110 130 HDLERAVELVRHFGIPV-GVVINKYDLN 156 (179)
T ss_pred HHHHHHHHHHHHcCCCE-EEEEeCCCCC
Confidence 99999999999999875 8999998765
No 40
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.84 E-value=1.1e-21 Score=189.80 Aligned_cols=238 Identities=18% Similarity=0.246 Sum_probs=127.1
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccccCCccccccCCCCCeeeeccC-hHHHH
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEIN-PEKAR 165 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d-~~~~~ 165 (413)
.+++|+|+ |||||||||+++|||.+||+.|+|||+||+||+++....++.......... +...... .+..+
T Consensus 3 ~~~~iai~-~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 74 (295)
T PRK13234 3 KLRQIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNAKAQDTVLS-------LAAEAGSVEDLEL 74 (295)
T ss_pred cceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEecccccccccccccCCCCCcHHH-------HHHhcCCcccccH
Confidence 45788887 999999999999999999999999999999999855554432211111100 0000000 01111
Q ss_pred HHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhc-ccCCccEEEEcCCCCh
Q 015096 166 EEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQ-EYSMFTRIVFDTAPTG 244 (413)
Q Consensus 166 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~-~~~~yD~IViDtpP~~ 244 (413)
++.. .....+++.++++..... ..-+|....+.. ..++.. ..++||||||||++ +
T Consensus 75 ~~~i----~~~~~gl~lipa~~~~~~---------------~~~~~~~~~l~~----~~l~~~~~~~~yD~IlID~~~-~ 130 (295)
T PRK13234 75 EDVM----KIGYKGIKCVESGGPEPG---------------VGCAGRGVITSI----NFLEENGAYDDVDYVSYDVLG-D 130 (295)
T ss_pred HHHh----eecCCCeEEEECCCCCCC---------------CCCCcceeeeHH----HHHHHcCCCccCCEEEEEcCC-C
Confidence 2211 122345666655321110 001122111111 122221 23579999999954 2
Q ss_pred hHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCc
Q 015096 245 HTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTV 324 (413)
Q Consensus 245 ~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~ 324 (413)
.+...+..| +.-...+.+++|++|+.
T Consensus 131 ~~~nal~~~------------------------------------------------------~~~~aAD~vIIPv~pe~ 156 (295)
T PRK13234 131 VVCGGFAMP------------------------------------------------------IRENKAQEIYIVMSGEM 156 (295)
T ss_pred ceECCCccc------------------------------------------------------cccccCceEEEecCccH
Confidence 221111110 00002358999999999
Q ss_pred ccHHHHHHHHHHHHhC----CCCCCeEEEecccCCCCCchHHHHHHH-HHHHHHHHHhHhcCCCCCCceEEecCCCCCCC
Q 015096 325 MAVSESSRLSESLKKE----NVPVKRLIVNQIIPPSASDCKFCAMKR-KDQMRALEMIKSDSELSSLMLIEAPLVDVEIR 399 (413)
Q Consensus 325 ~~~~~~~r~~~~l~~~----g~~~~gvVvN~v~p~~~~~~~~~~~~~-~~q~~~l~~i~~~~~~~~~~~~~~P~~~~e~~ 399 (413)
.++..+.++++.+++. ++++.|+|+|+..... ......... ......+..|+.+..+........|.+...|.
T Consensus 157 ~Sl~gl~~l~~~i~~~~~~~~l~~~gIV~N~~rt~~--~~~~~e~l~e~~g~~ll~~Ip~d~~V~eA~~~g~pv~~~~p~ 234 (295)
T PRK13234 157 MALYAANNIAKGILKYANSGGVRLGGLICNERQTDR--ELELAEALAARLGSKLIHFVPRDNIVQHAELRRMTVIEYAPD 234 (295)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCch--HHHHHHHHHHHhCCceEEECCCchHHHHHHHcCCceEEECCC
Confidence 9999999998888764 5667799999755331 111221111 01112344566554333333444454444443
Q ss_pred --CHHHHHHHHHHhh
Q 015096 400 --GVPALRFMGDIIW 412 (413)
Q Consensus 400 --g~~~L~~l~~~~~ 412 (413)
+..+...|++.|.
T Consensus 235 s~aa~~y~~La~ell 249 (295)
T PRK13234 235 SKQAGEYRALAEKIH 249 (295)
T ss_pred CHHHHHHHHHHHHHH
Confidence 3455666776654
No 41
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.84 E-value=3.7e-20 Score=176.12 Aligned_cols=52 Identities=33% Similarity=0.468 Sum_probs=49.0
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHH-HCCCCEEEEecCCCCCcchHhhccc
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTDPAHSLSDSFAQDL 139 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA-~~G~rVLlvD~D~~~~l~~~lg~~~ 139 (413)
+++|.|+|.||||||||+|.|||.+|| ..|+|||+||+|||++++.+||.+.
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s~t~~~~~~~ 54 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSLTSWLGLRP 54 (259)
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcchhhHhcCCCc
Confidence 589999999999999999999999999 6679999999999999999999875
No 42
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.84 E-value=7.5e-21 Score=186.60 Aligned_cols=175 Identities=22% Similarity=0.254 Sum_probs=110.5
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhhccccCCc-cccccCCCCCeeeeccChHHH
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDLTGGQ-LVPVEGPDFPLFALEINPEKA 164 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg~~~~~~~-~~~v~~~~~~l~~~~~d~~~~ 164 (413)
.+++|+|+|+||||||||+|+|||.+++++|+||+|||+|+++ +++.+||.+...+. +..+... ...++....
T Consensus 92 ~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~-----~~~~~~~~l 166 (322)
T TIGR03815 92 RGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQA-----RGRLPAGAL 166 (322)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhc-----CCCcCHHHH
Confidence 5789999999999999999999999999999999999999996 78888988643221 1011000 001122111
Q ss_pred HHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCCh
Q 015096 165 REEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTG 244 (413)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~ 244 (413)
.+.. ....++..+..+... + +.+....+.++++. .++.||||||||||..
T Consensus 167 ----~~~~--~~~~~l~vl~~~~~~---------------------~--~~~~~~~l~~~l~~-l~~~~D~VIID~p~~~ 216 (322)
T TIGR03815 167 ----RDAL--PRRGGLSVLSWGRAV---------------------G--AALPPAAVRAVLDA-ARRGGDLVVVDLPRRL 216 (322)
T ss_pred ----HHhC--CCcCCeEEEecCCCC---------------------c--CCCCHHHHHHHHHH-HHhcCCEEEEeCCCCC
Confidence 1111 111233333221100 0 00122334445544 3457999999999954
Q ss_pred hHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCc
Q 015096 245 HTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTV 324 (413)
Q Consensus 245 ~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~ 324 (413)
.... . ..+. ..+.+++|+.|+.
T Consensus 217 ~~~~-~-------------------------------------------------------~~L~--~AD~vliV~~~~~ 238 (322)
T TIGR03815 217 TPAA-E-------------------------------------------------------TALE--SADLVLVVVPADV 238 (322)
T ss_pred CHHH-H-------------------------------------------------------HHHH--HCCEEEEEcCCcH
Confidence 3210 0 0111 1358999999999
Q ss_pred ccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 325 MAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 325 ~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
.++..+.++++.++..+.+ ..+|+|+..+.
T Consensus 239 ~sl~~a~r~l~~l~~~~~~-~~lVv~~~~~~ 268 (322)
T TIGR03815 239 RAVAAAARVCPELGRRNPD-LRLVVRGPAPA 268 (322)
T ss_pred HHHHHHHHHHHHHhhhCCC-eEEEEeCCCCC
Confidence 9999999999999987654 47888975443
No 43
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.83 E-value=6.4e-20 Score=183.23 Aligned_cols=194 Identities=20% Similarity=0.171 Sum_probs=114.5
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec-CCCCCcchHhhccccCCccccccCCCCCeeeeccChHHHH
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST-DPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAR 165 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~-D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~~ 165 (413)
..++|+|+|.||||||||+|+|||..||.+|+|||+||+ |||+|++.+||...... +..... ++..........
T Consensus 105 ~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nlt~~~g~~~~~~----~~~~~t-l~~~~~~~~~~~ 179 (387)
T PHA02519 105 NPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTASMYHGYVPDLH----IHADDT-LLPFYLGERDNA 179 (387)
T ss_pred CceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCcccccCcCcccc----cccccc-HHHHHhCCCcch
Confidence 468999999999999999999999999999999999996 99999999998753110 000000 110000000001
Q ss_pred HHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCChh
Q 015096 166 EEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGH 245 (413)
Q Consensus 166 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~~ 245 (413)
. ..+..+...+++.++++..+..+...+...... ...++... ..+.+.++. ..++||||||||||+..
T Consensus 180 ~---~~i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~----~~~~~~~~----~~L~~~L~~-l~~~YD~IlID~pPslg 247 (387)
T PHA02519 180 E---YAIKPTCWPGLDIIPSCLALHRIETDLMQYHDA----GKLPHPPH----LMLRAAIES-VWDNYDIIVIDSAPNLG 247 (387)
T ss_pred H---hheecCCCCCEEEEECChHHHHHHHHHHHhhhc----cccccCHH----HHHHHHHHH-hhccCCEEEEECCCCcc
Confidence 1 111123345677777766655444333221000 00111111 223444443 34679999999999654
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcc
Q 015096 246 TLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVM 325 (413)
Q Consensus 246 ~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~~ 325 (413)
.+..-.+ . ..+.+++++.|+..
T Consensus 248 ~lt~nAL--------------------------------------------------------~--AAd~vliPv~~~~~ 269 (387)
T PHA02519 248 TGTINVV--------------------------------------------------------C--AADVIVVATPAELF 269 (387)
T ss_pred HHHHHHH--------------------------------------------------------H--HhCEEEEecCCcHH
Confidence 4321100 0 12478888899999
Q ss_pred cHHHHHHHHHHHHhC-------C-CCCCeEEEecccCC
Q 015096 326 AVSESSRLSESLKKE-------N-VPVKRLIVNQIIPP 355 (413)
Q Consensus 326 ~~~~~~r~~~~l~~~-------g-~~~~gvVvN~v~p~ 355 (413)
++..+..+++.+... + -+...+++|++.+.
T Consensus 270 s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~ 307 (387)
T PHA02519 270 DYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLT 307 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCC
Confidence 888777766555331 2 12345899998765
No 44
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.83 E-value=1.1e-19 Score=181.86 Aligned_cols=194 Identities=16% Similarity=0.130 Sum_probs=115.3
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec-CCCCCcchHhhccccCCccccccCCCCCeeeeccChHHHH
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST-DPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAR 165 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~-D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~~ 165 (413)
..++|+|+|.||||||||+|+|||..||.+|+|||+||+ |||+|++.+||..... . +...+ .+.....+....
T Consensus 105 ~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nlt~~~g~~~~~--~--~~~~~-~l~~~~~~~~~~- 178 (388)
T PRK13705 105 FPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDL--H--IHAED-TLLPFYLGEKDD- 178 (388)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCchhhhcCcCccc--c--ccccc-cHHHHHhcCCCc-
Confidence 468999999999999999999999999999999999996 9999999999875310 0 00000 011000000000
Q ss_pred HHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCChh
Q 015096 166 EEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGH 245 (413)
Q Consensus 166 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~~ 245 (413)
..+.+..+...+++.++++..+..+...+..... ....+.... ..+.+.++. ..+.||||||||||+..
T Consensus 179 --~~~~i~~t~~~~ldliPa~~~l~~~e~~l~~~~~----~~~~~~~~~----~~L~~~l~~-l~~~YD~IiIDtpP~l~ 247 (388)
T PRK13705 179 --ATYAIKPTCWPGLDIIPSCLALHRIETELMGKFD----EGKLPTDPH----LMLRLAIET-VAHDYDVIVIDSAPNLG 247 (388)
T ss_pred --hhhheecCCCCCEEEEeCCHHHHHHHHHHHHhhh----cccccccHH----HHHHHHHHh-hhccCCEEEEECCCchh
Confidence 1111112333577777776665544433322100 000111011 123344443 34679999999999654
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcc
Q 015096 246 TLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVM 325 (413)
Q Consensus 246 ~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~~ 325 (413)
.+..-.+ . .++.+++++.|+..
T Consensus 248 ~~t~nal--------------------------------------------------------~--AaD~viiP~~~~~~ 269 (388)
T PRK13705 248 IGTINVV--------------------------------------------------------C--AADVLIVPTPAELF 269 (388)
T ss_pred HHHHHHH--------------------------------------------------------H--HcCEEEEecCCcHH
Confidence 4221100 0 12578999999999
Q ss_pred cHHHHHHHHHHHHhC-------CC-CCCeEEEecccCC
Q 015096 326 AVSESSRLSESLKKE-------NV-PVKRLIVNQIIPP 355 (413)
Q Consensus 326 ~~~~~~r~~~~l~~~-------g~-~~~gvVvN~v~p~ 355 (413)
++..+.++++.++.. |. +...+++|++.+.
T Consensus 270 s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~ 307 (388)
T PRK13705 270 DYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNS 307 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecCC
Confidence 988888777666542 21 2245899998765
No 45
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.83 E-value=1.2e-20 Score=181.06 Aligned_cols=47 Identities=28% Similarity=0.559 Sum_probs=42.1
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhh
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFA 136 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg 136 (413)
++|+|+ |||||||||+|+|||.+||++|+||++||+|||++++..++
T Consensus 1 ~~ia~~-gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~~~~~~ 47 (275)
T TIGR01287 1 RQIAIY-GKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLL 47 (275)
T ss_pred CeeEEe-CCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCcccccc
Confidence 357776 79999999999999999999999999999999997777653
No 46
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.82 E-value=9.1e-21 Score=180.86 Aligned_cols=47 Identities=28% Similarity=0.608 Sum_probs=43.0
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhh
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFA 136 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg 136 (413)
+++|+|. +||||||||+|+|||.+||+.| |||+||+||+++++..++
T Consensus 2 ~~~iav~-~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~~~~~~ 48 (264)
T PRK13231 2 MKKIAIY-GKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADTTRTLC 48 (264)
T ss_pred ceEEEEE-CCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcccchhhh
Confidence 5789999 7999999999999999999999 999999999998777654
No 47
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.82 E-value=2.1e-20 Score=167.25 Aligned_cols=49 Identities=29% Similarity=0.445 Sum_probs=44.3
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC-CCcchHhhcc
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQD 138 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~-~~l~~~lg~~ 138 (413)
+|+|+|+|||+||||+|+|||.+++++|+||++||+|++ ++++.+++.+
T Consensus 1 ~i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~ 50 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLE 50 (179)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhcccc
Confidence 489999999999999999999999999999999999997 5777776654
No 48
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.81 E-value=1.2e-19 Score=163.99 Aligned_cols=241 Identities=18% Similarity=0.237 Sum_probs=137.5
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCC-CCEEEEecCCCCCcchHhhccccCCccccccCCCCCeeeeccChHHHHHHHHh
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNG-HPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREEFRN 170 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G-~rVLlvD~D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~~~~~~~ 170 (413)
+.++||||+||||+|+.||..|.++| ++||+||+||..||+..||++.. +.++.+ ....+++...
T Consensus 3 IaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~LGve~~---~~~lg~-----------~~e~~~k~~~ 68 (255)
T COG3640 3 IAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEALGVEEP---MKYLGG-----------KRELLKKRTG 68 (255)
T ss_pred EEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhcCCCCC---Cccccc-----------HHHHHHHHhc
Confidence 34569999999999999888888775 99999999998899999999863 111111 1111111110
Q ss_pred hhhccCCcchhhhhcccchhhHH-HHHhhhhcccc--cCC-CCCCHHHHHHHHHHH-HHHHhcccCCccEEEEcCCCChh
Q 015096 171 VTQKDGGTGVKDFMDGMGLGMLV-EQLGELKLGEL--LDT-PPPGLDEAIAISKVI-QFLESQEYSMFTRIVFDTAPTGH 245 (413)
Q Consensus 171 ~~~~~~~~~l~~l~~~~~~~~~~-~~l~~~~~~~~--l~~-~~pg~~e~~~~~~l~-~~l~~~~~~~yD~IViDtpP~~~ 245 (413)
.. ...+.-..+-.......+. +.+....-..+ ++. .-.|-.+++..+.+. ++++....++|||||+||-+...
T Consensus 69 a~--~~~~~~~~fk~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGiE 146 (255)
T COG3640 69 AE--PGGPPGEMFKENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVVIVDTEAGIE 146 (255)
T ss_pred cC--CCCCcccccccCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHHHHHHHHHHHHhcccCcEEEEecccchh
Confidence 00 0000000000001111111 10100000001 111 122555566655544 44444445679999999966322
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcc
Q 015096 246 TLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVM 325 (413)
Q Consensus 246 ~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~~ 325 (413)
++.++ ..+ ..+.+++|+.|.+-
T Consensus 147 --------------------------------------------------HfgRg------~~~--~vD~vivVvDpS~~ 168 (255)
T COG3640 147 --------------------------------------------------HFGRG------TIE--GVDLVIVVVDPSYK 168 (255)
T ss_pred --------------------------------------------------hhccc------ccc--CCCEEEEEeCCcHH
Confidence 11111 122 24689999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCeEEEecccCCCCCchHHHHHH-HHHHHHHHHHhHhcCCCCCCceEEecCCCCCCCCHHHH
Q 015096 326 AVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMK-RKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRGVPAL 404 (413)
Q Consensus 326 ~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~~~~~~~~~~~~-~~~q~~~l~~i~~~~~~~~~~~~~~P~~~~e~~g~~~L 404 (413)
+++.++|+.+..++.|+.-..+|+|++... ....... .....+.++.||+|+++....+...|+...+ .-....
T Consensus 169 sl~taeri~~L~~elg~k~i~~V~NKv~e~----e~~~~~~~~~~~~~vlg~iP~d~~v~~~dl~G~pl~~~~-~v~~~i 243 (255)
T COG3640 169 SLRTAERIKELAEELGIKRIFVVLNKVDEE----EELLRELAEELGLEVLGVIPYDPEVVEADLKGEPLNEEP-EVLKEI 243 (255)
T ss_pred HHHHHHHHHHHHHHhCCceEEEEEeeccch----hHHHHhhhhccCCeEEEEccCCHHHHhccccCCccccch-hhhHHH
Confidence 999999999999999988889999998765 1222222 2234457888888866555555555544332 334445
Q ss_pred HHHHHHh
Q 015096 405 RFMGDII 411 (413)
Q Consensus 405 ~~l~~~~ 411 (413)
+.+++.|
T Consensus 244 ~~I~~~l 250 (255)
T COG3640 244 EEIAERL 250 (255)
T ss_pred HHHHHHH
Confidence 5554443
No 49
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.81 E-value=1.6e-19 Score=168.37 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=47.6
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhcc
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQD 138 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~ 138 (413)
|++|+|.|.||||||||+|+|||..|+++|+||++||+|||+++..+++..
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~~ 51 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENA 51 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHhh
Confidence 479999999999999999999999999999999999999999998887643
No 50
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.81 E-value=5.2e-20 Score=178.02 Aligned_cols=47 Identities=34% Similarity=0.497 Sum_probs=41.7
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCC-cchHhh
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS-LSDSFA 136 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~-l~~~lg 136 (413)
++|+|+ |||||||||+|+|||.+||++|+|||+||+||+.+ .+.++|
T Consensus 1 ~vIav~-gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l~g 48 (296)
T TIGR02016 1 RIIAIY-GKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLLFG 48 (296)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchhcc
Confidence 478888 99999999999999999999999999999999974 444445
No 51
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.81 E-value=8.2e-20 Score=177.76 Aligned_cols=52 Identities=29% Similarity=0.464 Sum_probs=46.6
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhhccc
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDL 139 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg~~~ 139 (413)
..++|+|+ ||||+||||+++|||.+||++|+||++||+|+++ +++.+||...
T Consensus 30 ~~~ii~v~-gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~~ 82 (329)
T cd02033 30 KTQIIAIY-GKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKA 82 (329)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhccccC
Confidence 44677776 7999999999999999999999999999999997 9999999754
No 52
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.79 E-value=7e-19 Score=163.25 Aligned_cols=222 Identities=18% Similarity=0.187 Sum_probs=128.7
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccccCCccccccCCCCCeeeeccChHHHHHH
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREE 167 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~~~~ 167 (413)
|++|+|.|-||||||||+++|||.+|++.|++|++||+||++.|.--||++.... . + +.....+. ..|.+
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~~~~-----~---G-~a~a~l~~-~~W~~ 70 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPLDDR-----D---G-WARALLDG-ADWQQ 70 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCCccc-----c---c-HHHHHhCC-CCHHH
Confidence 6899999999999999999999999999999999999999998888899875310 0 0 11011111 11221
Q ss_pred HHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcc-cCCccEEEEcCCCChhH
Q 015096 168 FRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQE-YSMFTRIVFDTAPTGHT 246 (413)
Q Consensus 168 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~-~~~yD~IViDtpP~~~~ 246 (413)
.. .....++..+|-|.--..-...+.. + ... ...+.+.+.+.. ...||+|||||||....
T Consensus 71 ~~----~~~~~g~~~LPfG~l~~~~~~~~~~-----l----~~~------~~~l~~~l~~l~~~~~~~~iliD~P~g~~~ 131 (243)
T PF06564_consen 71 AA----YRYSDGVDFLPFGQLTEAEREAFEQ-----L----AQD------PQWLARALAALKALGPYDWILIDTPPGPSP 131 (243)
T ss_pred Hh----hccCCCCEEEcCCCCCHHHHHHHHH-----h----hcC------HHHHHHHHHHHhccCCCCEEEEeCCCCCcH
Confidence 11 0223466666644211100010100 0 001 112223333222 35799999999994332
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccc
Q 015096 247 LRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMA 326 (413)
Q Consensus 247 l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~~~ 326 (413)
.. . .++. ..+.+++|+.|+..+
T Consensus 132 ~~--------~------------------------------------------------~al~--~aD~vL~V~~~Da~s 153 (243)
T PF06564_consen 132 YT--------R------------------------------------------------QALA--AADLVLVVVNPDAAS 153 (243)
T ss_pred HH--------H------------------------------------------------HHHH--hCCeEEEEeCCCHHH
Confidence 10 0 0111 124789999999987
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEEecccCCCCCchHHHHHHHHHH-HHHHHHhHhcCCCCCCceEEecCCCCCCCCHH
Q 015096 327 VSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQ-MRALEMIKSDSELSSLMLIEAPLVDVEIRGVP 402 (413)
Q Consensus 327 ~~~~~r~~~~l~~~g~~~~gvVvN~v~p~~~~~~~~~~~~~~~q-~~~l~~i~~~~~~~~~~~~~~P~~~~e~~g~~ 402 (413)
.....+ . ... .-..+|||++.|.+.-.-.....+...+ ......|..|..+.+......|.+.+.|....
T Consensus 154 ~~~L~q---~--~l~-~~~~~liNq~~~~s~l~~D~~~~~~~~l~~llp~~IHrDeAv~EAlA~~~~v~~yaP~S~A 224 (243)
T PF06564_consen 154 HARLHQ---R--ALP-AGHRFLINQYDPASQLQRDLLQVWRQSLGRLLPGVIHRDEAVAEALASGQPVGEYAPHSQA 224 (243)
T ss_pred HHHHHH---h--ccc-CCcEEEEeccCccchHHHHHHHHHHHhhccccceeeecchHHHHHHhcCCCccccCccCHH
Confidence 644332 1 111 2248999999988654333333333322 23345566666666666777788888877643
No 53
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.77 E-value=2.8e-18 Score=155.50 Aligned_cols=157 Identities=24% Similarity=0.315 Sum_probs=99.3
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhh-c-cccCCccccccCCCCCeeeeccChHHHHHHH
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFA-Q-DLTGGQLVPVEGPDFPLFALEINPEKAREEF 168 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg-~-~~~~~~~~~v~~~~~~l~~~~~d~~~~~~~~ 168 (413)
|+|+|+|||+||||+|++||.+|+++|+||++||+|++.+...++. . +..... .+.....
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~- 62 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREG-----------------LENANAI- 62 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTS-----------------SHGHHCH-
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhcccc-----------------ceehhhh-
Confidence 7899999999999999999999999999999999999985554443 3 100000 0000000
Q ss_pred HhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCChhHHH
Q 015096 169 RNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHTLR 248 (413)
Q Consensus 169 ~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~~~l~ 248 (413)
+.......+.. . -.+ .....+.+.+.......||||||||||+....
T Consensus 63 ---------------~~~~~~~~~~~--~-----------~~~----~~~~~l~~~l~~l~~~~yD~iiiD~~~~~~~~- 109 (195)
T PF01656_consen 63 ---------------LKNFESQDIYQ--G-----------EEY----LDPELLREILESLIKSDYDYIIIDTPPGLSDP- 109 (195)
T ss_dssp ---------------HESCCHHHHHH--H-----------CHC----HHHHHHHHHHHHHHHTTSSEEEEEECSSSSHH-
T ss_pred ---------------hhccchhhhhh--h-----------hhh----hHHHHHHHHHHHhhhccccceeecccccccHH-
Confidence 00000000000 0 000 12233344444322334999999999954432
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcccHH
Q 015096 249 LLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVS 328 (413)
Q Consensus 249 ~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~~~~~ 328 (413)
+. ..+.. .+.+++|+.|+..++.
T Consensus 110 -------~~------------------------------------------------~~l~~--ad~viv~~~~~~~~i~ 132 (195)
T PF01656_consen 110 -------VR------------------------------------------------NALAA--ADYVIVPIEPDPSSIE 132 (195)
T ss_dssp -------HH------------------------------------------------HHHHT--SSEEEEEEESSHHHHH
T ss_pred -------HH------------------------------------------------HHHHh--CceeeeecCCcHHHHH
Confidence 00 11122 3579999999999999
Q ss_pred HHHHHHHHHHhCC--CCCCeEEEecccCC
Q 015096 329 ESSRLSESLKKEN--VPVKRLIVNQIIPP 355 (413)
Q Consensus 329 ~~~r~~~~l~~~g--~~~~gvVvN~v~p~ 355 (413)
.+.++++.++..+ .+..++|+||+.+.
T Consensus 133 ~~~~~~~~l~~~~~~~~~~~vv~N~v~~~ 161 (195)
T PF01656_consen 133 GAERLIELLKRLGKKLKIIGVVINRVDPG 161 (195)
T ss_dssp HHHHHHHHHHHHTHTEEEEEEEEEEETSC
T ss_pred HHHHHHHHHHHhccccceEEEEEeeeCCC
Confidence 9999999999988 45779999999765
No 54
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.76 E-value=1e-18 Score=161.23 Aligned_cols=78 Identities=17% Similarity=0.272 Sum_probs=58.6
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCCCCCchHHHHHHHHHHHHHHHHhHhcCCCCCCceEEecC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPL 393 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~~~~P~ 393 (413)
+..++||.|++.++++.+|+++.++.+|++. ++|+||..+.. .+....-.+....++++||+|.++...-....|+
T Consensus 187 D~ai~VTEPTp~glhD~kr~~el~~~f~ip~-~iViNr~~~g~---s~ie~~~~e~gi~il~~IPyd~~i~~~~~~g~~~ 262 (284)
T COG1149 187 DLAILVTEPTPFGLHDLKRALELVEHFGIPT-GIVINRYNLGD---SEIEEYCEEEGIPILGEIPYDKDIPEAYVNGEPF 262 (284)
T ss_pred CEEEEEecCCccchhHHHHHHHHHHHhCCce-EEEEecCCCCc---hHHHHHHHHcCCCeeEECCcchhHHHHHhCCCcc
Confidence 5799999999999999999999999999986 79999984432 2333333345678889999886655544555555
Q ss_pred CC
Q 015096 394 VD 395 (413)
Q Consensus 394 ~~ 395 (413)
..
T Consensus 263 ~~ 264 (284)
T COG1149 263 VE 264 (284)
T ss_pred cc
Confidence 54
No 55
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.71 E-value=6.3e-17 Score=132.80 Aligned_cols=39 Identities=44% Similarity=0.629 Sum_probs=37.1
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHC-CCCEEEEecCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDPA 128 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~-G~rVLlvD~D~~ 128 (413)
+|+++|+|||+||||++.|||..+++. |++|+++|+|++
T Consensus 1 ~i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~ 40 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ 40 (106)
T ss_pred CEEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 478999999999999999999999998 999999999987
No 56
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.69 E-value=1.8e-16 Score=136.59 Aligned_cols=39 Identities=38% Similarity=0.569 Sum_probs=37.0
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+|.|+++|||+||||++.++|..++++|++|+++|+|++
T Consensus 1 ~i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~ 39 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLG 39 (139)
T ss_pred CEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 488999999999999999999999999999999999974
No 57
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.68 E-value=1.6e-15 Score=138.80 Aligned_cols=51 Identities=27% Similarity=0.415 Sum_probs=47.4
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhcc
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQD 138 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~ 138 (413)
|++|.|.|.|||+||||.+..||..|+++|.+|.+||+||++++..|-...
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a 51 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENA 51 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhc
Confidence 579999999999999999999999999999999999999999999885543
No 58
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.63 E-value=3.1e-15 Score=122.01 Aligned_cols=39 Identities=38% Similarity=0.593 Sum_probs=36.3
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+|.|.|.|||+||||+|.+||..++++|++|+++|+|++
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 478999999999999999999999999999999999743
No 59
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.63 E-value=1.7e-16 Score=145.76 Aligned_cols=50 Identities=32% Similarity=0.423 Sum_probs=41.9
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhhcc
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQD 138 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg~~ 138 (413)
++|+|.||||||||||+|.|+|.+|++.|+||.++|+|.++ ++..+++..
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr 51 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENR 51 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHH
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhcc
Confidence 58999999999999999999999999999999999999985 999999754
No 60
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.56 E-value=3.4e-15 Score=138.52 Aligned_cols=49 Identities=33% Similarity=0.531 Sum_probs=40.0
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhhcc
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQD 138 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg~~ 138 (413)
|+|+|+ ||||.||||+|+||+.+||+.|+||+.|.+||.+ +...+++..
T Consensus 1 r~IAiY-GKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g~ 50 (273)
T PF00142_consen 1 RKIAIY-GKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGGK 50 (273)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTTS
T ss_pred CeEEEE-cCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCCc
Confidence 356666 9999999999999999999999999999999998 444556644
No 61
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=99.51 E-value=1.2e-14 Score=127.22 Aligned_cols=52 Identities=33% Similarity=0.403 Sum_probs=45.1
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhhcccc
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDLT 140 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg~~~~ 140 (413)
|+|.|+|.+||+||||+|.|||..+|+.|++|++||+|... ++..+++.+..
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~~~ 53 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIEPE 53 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSSSS
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcccccccccc
Confidence 58999999999999999999999999999999999999985 88888888753
No 62
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.45 E-value=3.4e-13 Score=121.75 Aligned_cols=48 Identities=33% Similarity=0.546 Sum_probs=41.8
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhh
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFA 136 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg 136 (413)
++.|+|+ ||||.||||++.|+|.+||+.|+||++|-+||-+ +--.++|
T Consensus 1 mr~iAiY-GKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llg 49 (278)
T COG1348 1 MRQIAIY-GKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLG 49 (278)
T ss_pred CceEEEe-cCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhC
Confidence 3567777 9999999999999999999999999999999997 4444555
No 63
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=99.40 E-value=4.9e-12 Score=122.79 Aligned_cols=183 Identities=23% Similarity=0.292 Sum_probs=121.6
Q ss_pred CCCcEEEEEeCCCcchhhHHHHHHHHHHHH-CCCCEEEEecCCC-CCcchHhhccccCCccccccCCCCCeeeeccChHH
Q 015096 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPA-HSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEK 163 (413)
Q Consensus 86 ~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~-~G~rVLlvD~D~~-~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~ 163 (413)
.+.+.+.|++.|||+|-||+|.|+|..++. .++.|+|+|.|.+ ++...+|++++..+.... .-.|+.
T Consensus 102 ~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~-----------~~~peR 170 (366)
T COG4963 102 QQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEA-----------VKQPER 170 (366)
T ss_pred hhceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHH-----------hcCHHH
Confidence 467899999999999999999999999996 5899999999998 588888998864322111 123444
Q ss_pred HHHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCC
Q 015096 164 AREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPT 243 (413)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~ 243 (413)
..+.+.+.......++++.+....+.. ..+-+....+.++++. .+..||+||||.|-.
T Consensus 171 LDq~lld~~~~~~~~~l~ll~a~~~~~---------------------~~~d~~~~~~~~Ll~~-~~~~~~~vV~Dlp~~ 228 (366)
T COG4963 171 LDQVLLDSLLTRLASGLKLLAAPTELA---------------------KNYDLKTGAVERLLDL-LRGSFDFVVVDLPNI 228 (366)
T ss_pred hhHHHHHHHHhccCCCceeecCCcchh---------------------hhcccccchHHHHHHH-hhccCCeEEEcCCCc
Confidence 444444433334444454443322211 1111223333444443 344699999999831
Q ss_pred hhHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCC
Q 015096 244 GHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPT 323 (413)
Q Consensus 244 ~~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~ 323 (413)
. ..|..+ .|. ..+.+++|++|+
T Consensus 229 -~-----------~~~t~~--------------------------------------------vL~--~Sd~iviv~e~s 250 (366)
T COG4963 229 -W-----------TDWTRQ--------------------------------------------VLS--GSDEIVIVAEPS 250 (366)
T ss_pred -c-----------chHHHH--------------------------------------------HHh--cCCeEEEEeccc
Confidence 1 112211 122 235899999999
Q ss_pred cccHHHHHHHHHHHHhCCC--CCCeEEEecccCCCCCc
Q 015096 324 VMAVSESSRLSESLKKENV--PVKRLIVNQIIPPSASD 359 (413)
Q Consensus 324 ~~~~~~~~r~~~~l~~~g~--~~~gvVvN~v~p~~~~~ 359 (413)
..+++.++++++.|++.+. +...+|+|++..+...+
T Consensus 251 l~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~~~~ 288 (366)
T COG4963 251 LASLRNAKELLDELKRLRPNDPKPILVLNRVGVPKRPE 288 (366)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCceEEeeecCCCCCCC
Confidence 9999999999999999865 34589999997664433
No 64
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.38 E-value=1.4e-11 Score=117.86 Aligned_cols=42 Identities=31% Similarity=0.466 Sum_probs=37.1
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
.+++|+++ |++|+||||++++||..+++.|++|++||+|+.+
T Consensus 71 ~~~vi~l~-G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 71 KPNVILFV-GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 34566666 8999999999999999999999999999999853
No 65
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.31 E-value=2.1e-11 Score=106.00 Aligned_cols=45 Identities=22% Similarity=0.339 Sum_probs=37.9
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC--CcchHhh
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH--SLSDSFA 136 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~--~l~~~lg 136 (413)
+.+.||||+||||++.+++..+.+.|.||+++|+|++. ++..+++
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~ 48 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILG 48 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhc
Confidence 34569999999999999999999999999999999874 3344444
No 66
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.29 E-value=1.3e-10 Score=103.71 Aligned_cols=46 Identities=33% Similarity=0.478 Sum_probs=39.1
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhh
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFA 136 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg 136 (413)
+.++.|++|+||||++.++|..+++.|++|++||+|+++ ..+..+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~ 48 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLR 48 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHH
Confidence 456679999999999999999999999999999999975 4444443
No 67
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=99.27 E-value=1.3e-10 Score=108.09 Aligned_cols=47 Identities=36% Similarity=0.554 Sum_probs=42.3
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchH
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDS 134 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~ 134 (413)
++++++.+|||||||||+|++||.+++++|++|+++|+||++ +++.+
T Consensus 2 ~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~~ 49 (241)
T PRK13886 2 AKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEGY 49 (241)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhhH
Confidence 368999999999999999999999999999999999999997 45443
No 68
>PRK10867 signal recognition particle protein; Provisional
Probab=99.24 E-value=1.9e-10 Score=116.22 Aligned_cols=41 Identities=29% Similarity=0.364 Sum_probs=37.5
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHC-CCCEEEEecCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDPAH 129 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~-G~rVLlvD~D~~~ 129 (413)
..++++.|.+|+||||++++||.+++++ |++|++||+|+++
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 4667777999999999999999999998 9999999999976
No 69
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.24 E-value=2.1e-11 Score=101.47 Aligned_cols=46 Identities=41% Similarity=0.710 Sum_probs=39.1
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhcc
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQD 138 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~ 138 (413)
++++||||+||||++.++|..++++|++|++||+|| .++...++..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~-~~~~~~~~~~ 47 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP-DDLPERLSVE 47 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc-hhhHHHHhhc
Confidence 467799999999999999999999999999999999 4555555544
No 70
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=99.23 E-value=4.7e-11 Score=105.78 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=34.6
Q ss_pred eEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEe
Q 015096 315 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVN 350 (413)
Q Consensus 315 ~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN 350 (413)
.+++|+.+....+..+....+.|++.|+++.|+|+|
T Consensus 131 ~vilV~~~~~~~~~~~~~~~~~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 131 PVILVVRVKLGTINHTLLTVEHARQTGLTLAGVILN 166 (166)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 589999999999999999999999999999999998
No 71
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.21 E-value=1.6e-10 Score=116.56 Aligned_cols=42 Identities=26% Similarity=0.370 Sum_probs=38.2
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHH-HCCCCEEEEecCCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTDPAH 129 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA-~~G~rVLlvD~D~~~ 129 (413)
.+.+++++|.+|+||||++++||.+++ +.|++|++||+|+++
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R 140 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR 140 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 457888899999999999999999987 589999999999975
No 72
>PRK13768 GTPase; Provisional
Probab=99.19 E-value=1.5e-09 Score=102.83 Aligned_cols=41 Identities=27% Similarity=0.356 Sum_probs=37.8
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
+.+++++|+||+||||++.+++.+++..|++|++||.||+.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~ 42 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAV 42 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCcc
Confidence 45777889999999999999999999999999999999974
No 73
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.17 E-value=3.7e-10 Score=110.20 Aligned_cols=41 Identities=29% Similarity=0.442 Sum_probs=36.1
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
+.+|.++ |.+|+||||++++||..++..|++|+++|+|+++
T Consensus 114 ~~vi~lv-GpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 114 PFVILVV-GVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 4555555 7999999999999999999999999999999865
No 74
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=99.10 E-value=4.2e-10 Score=89.37 Aligned_cols=33 Identities=45% Similarity=0.740 Sum_probs=30.5
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
++++||+|+||||++.++|..|++.|++|+++|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 566788899999999999999999999999998
No 75
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.07 E-value=2.9e-09 Score=107.06 Aligned_cols=41 Identities=27% Similarity=0.406 Sum_probs=37.3
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
..++.+.|.+|+||||+++.||..+.++|++|++|++|+++
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 45666778999999999999999999999999999999986
No 76
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.07 E-value=2.4e-09 Score=108.41 Aligned_cols=41 Identities=37% Similarity=0.413 Sum_probs=36.2
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
..++++.|.+|+||||++++||..+.+.|++|++|++|..+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 34555569999999999999999999999999999999864
No 77
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=98.99 E-value=3.1e-10 Score=86.92 Aligned_cols=48 Identities=27% Similarity=0.470 Sum_probs=36.8
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCCCCCchHHHHH
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAM 365 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~~~~~~~~~~~ 365 (413)
++.++||+|+..+..+++|.++++++.++++.|+|.|| ++..|+.|..
T Consensus 26 ~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENM----s~~~Cp~Cg~ 73 (81)
T PF10609_consen 26 DGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENM----SYFVCPHCGE 73 (81)
T ss_dssp SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-----EEE-TTT--
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECC----CccCCCCCCC
Confidence 58999999999999999999999999999999999999 4455666654
No 78
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.93 E-value=1.6e-08 Score=99.80 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=35.3
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
++| .+.|.+|+||||+++.||..+..+|++|+++++|+.+
T Consensus 242 ~vI-~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTI-ALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEE-EEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 444 4557799999999999999999999999999999875
No 79
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.89 E-value=3.1e-08 Score=97.51 Aligned_cols=41 Identities=24% Similarity=0.398 Sum_probs=35.2
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
+++++++ |..|+||||++++||..+..+|++|.+|++|+++
T Consensus 206 ~~ii~lv-GptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR 246 (407)
T PRK12726 206 HRIISLI-GQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR 246 (407)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccC
Confidence 3455555 5679999999999999999999999999999985
No 80
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=98.88 E-value=1.5e-08 Score=94.01 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=37.3
Q ss_pred eEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 315 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 315 ~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
.+++|+.++..++..+...++.++..|+++.|+|+|++.+.
T Consensus 135 pvilV~~~~~~~i~~~~~~i~~l~~~~~~i~gvIlN~~~~~ 175 (222)
T PRK00090 135 PVILVVGVKLGCINHTLLTLEAIRARGLPLAGWVANGIPPE 175 (222)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEEccCCCc
Confidence 58999999999999999999999999999999999998664
No 81
>PRK14974 cell division protein FtsY; Provisional
Probab=98.85 E-value=2.7e-08 Score=97.53 Aligned_cols=41 Identities=27% Similarity=0.385 Sum_probs=36.7
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
..++++.|.+|+||||++++||..+...|++|+++++|..+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 45777778999999999999999999999999999999764
No 82
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.77 E-value=9e-08 Score=95.67 Aligned_cols=42 Identities=33% Similarity=0.440 Sum_probs=36.2
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHH-HHCCCCEEEEecCCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKF-ANNGHPTLVVSTDPAHS 130 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~l-A~~G~rVLlvD~D~~~~ 130 (413)
..++++.|.+|+||||++++||..+ ...|++|+++|+|+++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 4566677999999999999999876 56799999999999764
No 83
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.77 E-value=2.1e-07 Score=95.29 Aligned_cols=41 Identities=32% Similarity=0.436 Sum_probs=34.8
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHC--CCCEEEEecCCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANN--GHPTLVVSTDPAH 129 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~--G~rVLlvD~D~~~ 129 (413)
+.+|+|+ |++|+||||++.+||..++.+ |++|.+|++|.++
T Consensus 350 G~vIaLV-GPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR 392 (559)
T PRK12727 350 GGVIALV-GPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR 392 (559)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 4556665 889999999999999998875 5799999999875
No 84
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.72 E-value=1.7e-07 Score=95.10 Aligned_cols=40 Identities=28% Similarity=0.374 Sum_probs=34.1
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHH--HCCCCEEEEecCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFA--NNGHPTLVVSTDPAH 129 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA--~~G~rVLlvD~D~~~ 129 (413)
++++| .|++||||||++++||..++ ..|++|.+||+|+++
T Consensus 222 ~~i~~-vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 222 GVVAL-VGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred cEEEE-ECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 44444 48899999999999999998 468999999999875
No 85
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.66 E-value=2.5e-07 Score=84.26 Aligned_cols=39 Identities=33% Similarity=0.454 Sum_probs=32.6
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
++++-|-.||||||+++-||..+..+|++|.+|.+|..+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 445558889999999999999999899999999999764
No 86
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.60 E-value=5.9e-07 Score=89.01 Aligned_cols=42 Identities=29% Similarity=0.409 Sum_probs=37.6
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
...++++-|--|.||||+|+-||.+|.++|+||+||.+|..+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R 140 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR 140 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC
Confidence 346666678999999999999999999999999999999875
No 87
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.59 E-value=4.2e-07 Score=88.41 Aligned_cols=41 Identities=22% Similarity=0.450 Sum_probs=36.2
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
+++|.|+ |++|+||||+..+++..+.++|++|.+|+.|+..
T Consensus 34 ~~~i~i~-G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 34 AHRVGIT-GTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3455554 9999999999999999999999999999999975
No 88
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.57 E-value=1.2e-06 Score=87.70 Aligned_cols=41 Identities=27% Similarity=0.446 Sum_probs=35.1
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHH----CCCCEEEEecCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFAN----NGHPTLVVSTDPAH 129 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~----~G~rVLlvD~D~~~ 129 (413)
..++++.|+.||||||+++.||..+.. .|++|.+|++|..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R 218 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR 218 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence 356667799999999999999998874 58899999999864
No 89
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.56 E-value=1e-06 Score=90.46 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=36.9
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
|+.|+|++.++|+||||++++|+.+|+++|++|..+..+|
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gp 42 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGP 42 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCC
Confidence 5689999999999999999999999999999999998743
No 90
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=98.41 E-value=8.2e-06 Score=75.20 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=39.6
Q ss_pred eEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCCC
Q 015096 315 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPS 356 (413)
Q Consensus 315 ~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~~ 356 (413)
-+++|+...--+++.+.-.++.++..|+++.|+|+|+..|..
T Consensus 138 pvILV~~~~LGtINHtlLt~eal~~~gl~l~G~I~n~~~~~~ 179 (223)
T COG0132 138 PVILVVGIKLGTINHTLLTVEALRARGLPLAGWVANGINPEL 179 (223)
T ss_pred CEEEEecCCccHHHHHHHHHHHHHHCCCCEEEEEEccCCCch
Confidence 489999999999999999999999999999999999988764
No 91
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.38 E-value=8.8e-06 Score=79.79 Aligned_cols=40 Identities=28% Similarity=0.493 Sum_probs=35.8
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
.++-+.|-+|+||||+...|+..+...|++|.+|..||..
T Consensus 57 ~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s 96 (332)
T PRK09435 57 LRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSS 96 (332)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCc
Confidence 4555568899999999999999999999999999999985
No 92
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=98.38 E-value=5.2e-06 Score=70.88 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=37.9
Q ss_pred eEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 315 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 315 ~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
.+++|++|+..++..+...++.++..|+.+.++|.|+..+.
T Consensus 70 ~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~ 110 (134)
T cd03109 70 PAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEK 110 (134)
T ss_pred CEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCc
Confidence 48999999999999999999999999999999999997764
No 93
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=98.38 E-value=9.1e-07 Score=95.31 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=34.2
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
++.|.|++...|+|||+++..|+.+|.++|.||..+=
T Consensus 2 ~k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fK 38 (684)
T PRK05632 2 SRSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFK 38 (684)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeC
Confidence 4679999999999999999999999999999998876
No 94
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.37 E-value=6.6e-06 Score=78.46 Aligned_cols=40 Identities=28% Similarity=0.382 Sum_probs=34.6
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
.++++ .|++|+||||+...+|..+..+|++|.++++|.++
T Consensus 76 ~~i~~-~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 76 QTIAL-IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CEEEE-ECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 44554 47899999999999999999889999999999764
No 95
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.34 E-value=1.6e-06 Score=83.47 Aligned_cols=40 Identities=33% Similarity=0.503 Sum_probs=34.1
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHC-C-CCEEEEecCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANN-G-HPTLVVSTDPAH 129 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~-G-~rVLlvD~D~~~ 129 (413)
++|+|+ |.+|+||||+++.||..++.+ | ++|.+|++|+++
T Consensus 195 ~vi~~v-GptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 195 GVIALV-GPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 445544 789999999999999999976 5 899999999865
No 96
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.34 E-value=2.5e-05 Score=75.27 Aligned_cols=39 Identities=31% Similarity=0.426 Sum_probs=34.2
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
..++.+-|-.|+||||+-+-||..+.++|++|++.=+|-
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DT 177 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDT 177 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecch
Confidence 345555589999999999999999999999999999885
No 97
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=98.33 E-value=1.7e-06 Score=78.87 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=37.1
Q ss_pred eEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 315 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 315 ~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
.+++|+....-++.++.-.++.++..|+++.|+|+|++.++
T Consensus 131 ~vIlV~~~~~g~i~~~l~~~~~~~~~g~~v~GvI~N~~~~~ 171 (199)
T PF13500_consen 131 PVILVASGRLGTINHTLLTIEALKQRGIRVLGVILNRVPEP 171 (199)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHHHCTTS-EEEEEEEECTCC
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEEECCCCH
Confidence 69999999999999999999999999999999999997554
No 98
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.23 E-value=0.00017 Score=68.54 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=43.2
Q ss_pred CCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC--CcchHhhcc
Q 015096 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH--SLSDSFAQD 138 (413)
Q Consensus 86 ~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~--~l~~~lg~~ 138 (413)
++..+|.|+ |-||+||||+--.|...|.++|+||.++-.||.. +=..+||-.
T Consensus 49 G~a~viGIT-G~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDR 102 (323)
T COG1703 49 GNAHVIGIT-GVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDR 102 (323)
T ss_pred CCCcEEEec-CCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccH
Confidence 345678877 8999999999999999999999999999999974 555555543
No 99
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=98.21 E-value=1.2e-05 Score=79.83 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=30.0
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEE
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVV 123 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlv 123 (413)
.|++.+.-.|+||||++..|..+|.++|.+|--.
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 5788888999999999999999999999877543
No 100
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.19 E-value=2.4e-05 Score=83.88 Aligned_cols=40 Identities=33% Similarity=0.452 Sum_probs=33.2
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHH-HCC-CCEEEEecCCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFA-NNG-HPTLVVSTDPAH 129 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA-~~G-~rVLlvD~D~~~ 129 (413)
.|+.+-|-.|+||||+.+.||..+. ..| ++|.+|++|..+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 4555569999999999999999885 566 599999999754
No 101
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.14 E-value=5.5e-05 Score=70.69 Aligned_cols=45 Identities=24% Similarity=0.429 Sum_probs=39.0
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC-CCcc
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLS 132 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~-~~l~ 132 (413)
.++++++-|-.|+||||...-|-.++..++.+--+|.+||+ +++.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vp 63 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVP 63 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCC
Confidence 35677777999999999999999999999999999999998 3544
No 102
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=98.13 E-value=1.8e-05 Score=73.93 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=37.2
Q ss_pred eEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 315 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 315 ~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
.+++|+....-.+..+.-..+.++..|+++.|+|+|++.|.
T Consensus 137 pvilV~~~~lg~in~~lLt~~~l~~~~~~~~gvV~N~~~~~ 177 (231)
T PRK12374 137 PVLMVVGIQEGCINHALLTAQAIANDGLPLIGWVANRINPG 177 (231)
T ss_pred CEEEEECCCcChHHHHHHHHHHHHhCCCcEEEEEEeCccCc
Confidence 58999988888899999999999999999999999998664
No 103
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=5.9e-05 Score=73.64 Aligned_cols=50 Identities=26% Similarity=0.349 Sum_probs=40.7
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhhc
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQ 137 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg~ 137 (413)
...++++-|--|+||||++.-||.++.++|+||+||=+|--+ ..-+-|.+
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkq 150 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQ 150 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHH
Confidence 345666668899999999999999999999999999999754 44444444
No 104
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=7.8e-05 Score=74.17 Aligned_cols=40 Identities=33% Similarity=0.442 Sum_probs=33.4
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHH-CC-CCEEEEecCCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFAN-NG-HPTLVVSTDPAH 129 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~-~G-~rVLlvD~D~~~ 129 (413)
.++++.|..|+||||+++.||..+.. .| ++|.+|++|..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 45556799999999999999998764 46 699999999763
No 105
>PRK00784 cobyric acid synthase; Provisional
Probab=98.05 E-value=7.2e-05 Score=77.65 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=33.3
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
++.|.|++...|||||++++.|+.+|.++|++|..+=
T Consensus 2 ~~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~K 38 (488)
T PRK00784 2 AKALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFK 38 (488)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEeccc
Confidence 4679999999999999999999999999999888653
No 106
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.97 E-value=0.00015 Score=68.14 Aligned_cols=39 Identities=33% Similarity=0.474 Sum_probs=29.3
Q ss_pred eCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-Ccch
Q 015096 95 GGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSD 133 (413)
Q Consensus 95 sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~ 133 (413)
-|-.|+||||.+.++..++...|++|.+|..||+. ++..
T Consensus 2 iGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y 41 (238)
T PF03029_consen 2 IGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPY 41 (238)
T ss_dssp EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS
T ss_pred CCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhccccc
Confidence 37889999999999999999999999999999985 4433
No 107
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=97.95 E-value=9.7e-06 Score=83.01 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=46.7
Q ss_pred CCcEEEEEeCCC---cchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhhcccc
Q 015096 87 TQRKYYMLGGKG---GVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDLT 140 (413)
Q Consensus 87 ~~~~i~v~sgKG---GvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg~~~~ 140 (413)
..++|.|+|..+ |+||||+|+|||..|++.|+||+++ +|. +++..||.+..
T Consensus 54 ~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvlli---LR~Psl~~~fg~kgg 108 (557)
T PRK13505 54 DGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTVIA---LREPSLGPVFGIKGG 108 (557)
T ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEEEE---EecCCcccccCCCCC
Confidence 468999999999 9999999999999999999999999 874 99999988753
No 108
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.93 E-value=5.5e-05 Score=77.67 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=31.7
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
|+|++...|+||||+++.|+.+|.++|++|..+=
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK 35 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFK 35 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEc
Confidence 7889999999999999999999999999998875
No 109
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.92 E-value=0.0006 Score=70.52 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=31.0
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
|.|++.-.+||||++++.|+..|.++|++|..+-.
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp 35 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKS 35 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 46788889999999999999999999999986653
No 110
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.87 E-value=0.00015 Score=74.39 Aligned_cols=40 Identities=33% Similarity=0.498 Sum_probs=32.8
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHH-HCC-CCEEEEecCCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFA-NNG-HPTLVVSTDPAH 129 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA-~~G-~rVLlvD~D~~~ 129 (413)
.|+.+-|-.|+||||+.+.||..+. ++| ++|.+|++|..+
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R 298 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR 298 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence 3555558999999999999999886 456 599999999854
No 111
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.85 E-value=0.00066 Score=63.66 Aligned_cols=50 Identities=18% Similarity=0.305 Sum_probs=34.6
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC--CcchHhhc
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH--SLSDSFAQ 137 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~--~l~~~lg~ 137 (413)
...+|.|+ |.+|+||||+.-.|+..+.++|+||.++-.||.. +=..+||-
T Consensus 28 ~a~~iGiT-G~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGD 79 (266)
T PF03308_consen 28 RAHVIGIT-GPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGD 79 (266)
T ss_dssp -SEEEEEE-E-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--
T ss_pred CceEEEee-CCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccccc
Confidence 34667764 8999999999999999999999999999999973 44445553
No 112
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=97.84 E-value=1.8e-05 Score=80.21 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=46.5
Q ss_pred CCcEEEEEeCCC---cchhhHHHHHHHHHHHHCCCCEEEEecCCC-CCcchHhhcccc
Q 015096 87 TQRKYYMLGGKG---GVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQDLT 140 (413)
Q Consensus 87 ~~~~i~v~sgKG---GvGKTTvAa~LA~~lA~~G~rVLlvD~D~~-~~l~~~lg~~~~ 140 (413)
..++|.|+|.-+ |+||||+|+|||..|++.|+||+++ +| ++++..||.+..
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~~---LR~PSlg~~fg~kgg 91 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIAC---LREPSLGPTFGIKGG 91 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE---EecCCcCcccCCCCC
Confidence 468999999999 9999999999999999999999988 87 499999998864
No 113
>PHA02542 41 41 helicase; Provisional
Probab=97.83 E-value=0.00017 Score=74.23 Aligned_cols=63 Identities=19% Similarity=0.275 Sum_probs=50.7
Q ss_pred cccCCchhhhh-cC-CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhh
Q 015096 74 SEAVSGFDEMV-AG-TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFA 136 (413)
Q Consensus 74 ~~~~~~~~~~~-~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg 136 (413)
..++..++.+. .+ ....+++++|.+|+||||+|.|+|...++.|++|++++++... .+...+-
T Consensus 173 ~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~Rl~ 238 (473)
T PHA02542 173 PFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAKRID 238 (473)
T ss_pred CCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHH
Confidence 34566777776 32 3356889999999999999999999999999999999999885 6665553
No 114
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.75 E-value=0.00047 Score=68.49 Aligned_cols=41 Identities=29% Similarity=0.490 Sum_probs=33.3
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHH--HCCCCEEEEecCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFA--NNGHPTLVVSTDPAH 129 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA--~~G~rVLlvD~D~~~ 129 (413)
+.++.+-|.-||||||+-|-||..+. ...+||.+|.+|-.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYR 245 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYR 245 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccch
Confidence 44555558889999999999999999 445699999999654
No 115
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=97.74 E-value=3.1e-05 Score=79.21 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=46.3
Q ss_pred CCcEEEEEeCCC---cchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhhcccc
Q 015096 87 TQRKYYMLGGKG---GVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDLT 140 (413)
Q Consensus 87 ~~~~i~v~sgKG---GvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg~~~~ 140 (413)
..++|.|+|--+ |+||||+|+|||..|++.|+|| ||+ +|. +++..||.+..
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~--i~~-LR~Pslg~~fg~kgg 107 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV--CAC-IRQPSMGPVFGVKGG 107 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce--EEE-eccCCcCCccCCCCC
Confidence 468999999999 9999999999999999999999 888 884 99999998753
No 116
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.70 E-value=0.0003 Score=71.53 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=32.4
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
|+.|.|++...|+||||+++.|+.+|.++|.+|--+=
T Consensus 1 m~~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K 37 (433)
T PRK13896 1 MKGFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAK 37 (433)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEe
Confidence 3578999999999999999999999999999885443
No 117
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.0018 Score=65.08 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=35.8
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
.-++++-|-.||||||-=+-+|.+|-+.+.|||+.-+|+-+
T Consensus 378 PYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFR 418 (587)
T KOG0781|consen 378 PYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFR 418 (587)
T ss_pred CeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchh
Confidence 34555558999999999999999999999999999999864
No 118
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=97.52 E-value=0.00013 Score=69.78 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=35.0
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
|++|.|++. +|+||||++.+|+..|+++| +|.+|+.|+.+
T Consensus 1 M~~i~i~G~-~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~ 40 (274)
T PRK14493 1 MKVLSIVGY-KATGKTTLVERLVDRLSGRG-RVGTVKHMDTE 40 (274)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCC
Confidence 456777766 59999999999999999999 89999999854
No 119
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.46 E-value=0.0048 Score=55.87 Aligned_cols=41 Identities=29% Similarity=0.414 Sum_probs=36.7
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
+.-.++-|..|+||||.+.++-.+.-.-|+++-+|..||+.
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAa 43 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAA 43 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHH
Confidence 44556779999999999999999999999999999999984
No 120
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.45 E-value=0.00058 Score=62.67 Aligned_cols=43 Identities=28% Similarity=0.456 Sum_probs=37.3
Q ss_pred EEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHh
Q 015096 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSF 135 (413)
Q Consensus 93 v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~l 135 (413)
++-|.+|+||||-+..+-.-++..|++|.+|..||+. ++..-+
T Consensus 6 vVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~ 49 (290)
T KOG1533|consen 6 VVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYEC 49 (290)
T ss_pred EEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCC
Confidence 4459999999999999999999999999999999996 555433
No 121
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.44 E-value=0.00023 Score=65.69 Aligned_cols=53 Identities=30% Similarity=0.448 Sum_probs=43.4
Q ss_pred cCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 76 AVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 76 ~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+...++.++.+ ....+..+.|.+|+||||++..+|..++.+|.+|+.+|++..
T Consensus 4 Gi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~ 58 (218)
T cd01394 4 GCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGL 58 (218)
T ss_pred chhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 34567777753 335677788999999999999999999999999999998743
No 122
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.44 E-value=0.0023 Score=65.85 Aligned_cols=41 Identities=22% Similarity=0.202 Sum_probs=32.1
Q ss_pred eEEEEEcCCcccHHHHHH----HHHHHHhCCCCCCeEEEecccCC
Q 015096 315 EFVIVTIPTVMAVSESSR----LSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 315 ~~vlVt~p~~~~~~~~~r----~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
.+++|+.....+++.+.- +.+.++..++++.|+|+|++.+.
T Consensus 352 PVILV~~~~~g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~~ 396 (476)
T PRK06278 352 PVYIVSSCSKSGIEGAFVESMAYYSLLKKMGVKVEGIILNKVYNM 396 (476)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCcH
Confidence 589999999888655544 34567777999999999998753
No 123
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.26 E-value=0.00054 Score=63.56 Aligned_cols=51 Identities=29% Similarity=0.453 Sum_probs=43.0
Q ss_pred cCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 76 AVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 76 ~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+...+++++.+ ....+..++|.+|+|||+++..+|...++.|.+|+.||++
T Consensus 8 Gi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 8 GCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 44667777753 3356777789999999999999999999999999999998
No 124
>PRK06526 transposase; Provisional
Probab=97.25 E-value=0.0003 Score=66.68 Aligned_cols=86 Identities=22% Similarity=0.285 Sum_probs=57.4
Q ss_pred hhhhhhhhhccccCCCCCCCCCCccccccccccccccCccccccccCCcccCCchhhhhcCCCcEEEEEeCCCcchhhHH
Q 015096 26 KRNSNAVSFMGLLSFSPKTSSFSTGLISISLKQRRSKNSFQVRAVAAPSEAVSGFDEMVAGTQRKYYMLGGKGGVGKTSC 105 (413)
Q Consensus 26 ~r~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~sgKGGvGKTTv 105 (413)
.|+.+++.+....+.+|.. +.+..+++...+.......... ..+. ++... .-+++.|++|+|||++
T Consensus 49 ~R~~~~~~~~lk~a~~p~~----~~le~fd~~~~~~~~~~~~~~l-------~~~~-fi~~~--~nlll~Gp~GtGKThL 114 (254)
T PRK06526 49 ARESHGGEGRIRAARFPAR----KSLEEFDFDHQRSLKRDTIAHL-------GTLD-FVTGK--ENVVFLGPPGTGKTHL 114 (254)
T ss_pred HHHHHHHHHHHHhCCCCCC----CChhhccCccCCCcchHHHHHH-------hcCc-hhhcC--ceEEEEeCCCCchHHH
Confidence 6777778888777777774 5666666655433333222222 2222 23332 2356668999999999
Q ss_pred HHHHHHHHHHCCCCEEEEec
Q 015096 106 AASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 106 Aa~LA~~lA~~G~rVLlvD~ 125 (413)
|.+++..+.++|++|+.+.+
T Consensus 115 a~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 115 AIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred HHHHHHHHHHCCCchhhhhH
Confidence 99999999999999877544
No 125
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.21 E-value=0.00047 Score=60.19 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=36.5
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC-CCcch
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSD 133 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~-~~l~~ 133 (413)
.++.++|..|+||||+|..|...|-+.|.+|.++|.|-- +.+..
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~ 47 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNA 47 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCC
Confidence 456667999999999999999999999999999999954 34444
No 126
>PRK08181 transposase; Validated
Probab=97.19 E-value=0.00055 Score=65.37 Aligned_cols=87 Identities=23% Similarity=0.216 Sum_probs=60.3
Q ss_pred hhhhhhhhhccccCCCCCCCCCCccccccccccccccCccccccccCCcccCCchhhhhcCCCcEEEEEeCCCcchhhHH
Q 015096 26 KRNSNAVSFMGLLSFSPKTSSFSTGLISISLKQRRSKNSFQVRAVAAPSEAVSGFDEMVAGTQRKYYMLGGKGGVGKTSC 105 (413)
Q Consensus 26 ~r~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~sgKGGvGKTTv 105 (413)
.|+.+++..+...+.+|.. +.+..+++...+.......... ..+..+++.. . -+++.|..|+|||.+
T Consensus 56 ~R~~~~~~r~lk~A~~p~~----~tle~fd~~~~~~~~~~~~~~L-------~~~~~~~~~~-~-nlll~Gp~GtGKTHL 122 (269)
T PRK08181 56 ERARRRIERHLAEAHLPPG----KTLDSFDFEAVPMVSKAQVMAI-------AAGDSWLAKG-A-NLLLFGPPGGGKSHL 122 (269)
T ss_pred HHHHHHHHHHHHHCCCCCC----CCHhhCCccCCCCCCHHHHHHH-------HHHHHHHhcC-c-eEEEEecCCCcHHHH
Confidence 6777778888777777763 6667776655443333333332 2233344433 2 356669999999999
Q ss_pred HHHHHHHHHHCCCCEEEEec
Q 015096 106 AASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 106 Aa~LA~~lA~~G~rVLlvD~ 125 (413)
|.++|..+.++|++|+.+++
T Consensus 123 a~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 123 AAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred HHHHHHHHHHcCCceeeeeH
Confidence 99999999999999999875
No 127
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.00065 Score=59.85 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=41.4
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC-CCCcchHhhcc
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP-AHSLSDSFAQD 138 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~-~~~l~~~lg~~ 138 (413)
.++-+.|-.|.||||+|..|...|.++|++|-++|.|- ++.|..-||..
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs 73 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFS 73 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCC
Confidence 45555689999999999999999999999999999996 45777666654
No 128
>PRK07667 uridine kinase; Provisional
Probab=97.13 E-value=0.00086 Score=60.85 Aligned_cols=40 Identities=25% Similarity=0.308 Sum_probs=36.4
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+.|+-.+|-+|+||||+|..|+..+.+.|.+|.+++.|-.
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 4677778999999999999999999999999999999964
No 129
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.12 E-value=0.0008 Score=59.84 Aligned_cols=39 Identities=33% Similarity=0.437 Sum_probs=34.6
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.++++.|-+|+||||+|..||..+...|.++.++|.|..
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 366666999999999999999999988999999999964
No 130
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.11 E-value=0.00074 Score=64.05 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=54.4
Q ss_pred hhhhhhhhhccccCCCCCCCCCCccccccccccccccCccccccccCCcccCCchhhhhcCCCcEEEEEeCCCcchhhHH
Q 015096 26 KRNSNAVSFMGLLSFSPKTSSFSTGLISISLKQRRSKNSFQVRAVAAPSEAVSGFDEMVAGTQRKYYMLGGKGGVGKTSC 105 (413)
Q Consensus 26 ~r~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~sgKGGvGKTTv 105 (413)
.|+.+..........+|.. +.+..+.+...+.......... ..+.+++. . ..=+++.|+.|||||.+
T Consensus 55 ~~~~r~~~~~~~~a~~p~~----k~~~~~d~~~~~~~~~~~l~~~-------~~~~~~~~-~-~~nl~l~G~~G~GKThL 121 (254)
T COG1484 55 AREARKIERRLRSASFPAK----KTFEEFDFEFQPGIDKKALEDL-------ASLVEFFE-R-GENLVLLGPPGVGKTHL 121 (254)
T ss_pred HHHHHHHHHHHHHhcCCcc----CCcccccccCCcchhHHHHHHH-------HHHHHHhc-c-CCcEEEECCCCCcHHHH
Confidence 5555556666555666664 5555555544432222211111 23333344 2 23345559999999999
Q ss_pred HHHHHHHHHHCCCCEEEEec
Q 015096 106 AASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 106 Aa~LA~~lA~~G~rVLlvD~ 125 (413)
|+++|..+.+.|.+|+.+.+
T Consensus 122 a~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 122 AIAIGNELLKAGISVLFITA 141 (254)
T ss_pred HHHHHHHHHHcCCeEEEEEH
Confidence 99999999988999999986
No 131
>PRK09183 transposase/IS protein; Provisional
Probab=97.06 E-value=0.0013 Score=62.61 Aligned_cols=86 Identities=15% Similarity=0.209 Sum_probs=56.7
Q ss_pred hhhhhhhhhccccCCCCCCCCCCccccccccccccccCccccccccCCcccCCchhhhhcCCCcEEEEEeCCCcchhhHH
Q 015096 26 KRNSNAVSFMGLLSFSPKTSSFSTGLISISLKQRRSKNSFQVRAVAAPSEAVSGFDEMVAGTQRKYYMLGGKGGVGKTSC 105 (413)
Q Consensus 26 ~r~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~sgKGGvGKTTv 105 (413)
.|+.+++......+.+|.. +.+..+++...+.........+ ..+. ++... . .+++.|..|+|||++
T Consensus 53 ~R~~~~~~~~~k~a~~p~~----~~l~~fd~~~~~~~~~~~i~~L-------~~~~-~i~~~-~-~v~l~Gp~GtGKThL 118 (259)
T PRK09183 53 ARHQRKQAMYTRMAAFPAV----KTFEEYDFTFATGAPQKQLQSL-------RSLS-FIERN-E-NIVLLGPSGVGKTHL 118 (259)
T ss_pred HHHHHHHHHHHHhCCCCCC----CcHhhcccccCCCCCHHHHHHH-------hcCC-chhcC-C-eEEEEeCCCCCHHHH
Confidence 6777777777777777774 5666666655544433333322 1111 12222 2 344568999999999
Q ss_pred HHHHHHHHHHCCCCEEEEec
Q 015096 106 AASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 106 Aa~LA~~lA~~G~rVLlvD~ 125 (413)
|.++|..+..+|++|+.+++
T Consensus 119 a~al~~~a~~~G~~v~~~~~ 138 (259)
T PRK09183 119 AIALGYEAVRAGIKVRFTTA 138 (259)
T ss_pred HHHHHHHHHHcCCeEEEEeH
Confidence 99999998889999998874
No 132
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.06 E-value=0.0035 Score=62.13 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=33.9
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
-++++++++ ++||||+++-||-.+-++|+||.+||+|+.
T Consensus 74 ~~vmvvG~v-DSGKSTLt~~LaN~~l~rG~~v~iiDaDvG 112 (398)
T COG1341 74 GVVMVVGPV-DSGKSTLTTYLANKLLARGRKVAIIDADVG 112 (398)
T ss_pred cEEEEECCc-CcCHHHHHHHHHHHHhhcCceEEEEeCCCC
Confidence 456666554 799999999999999999999999999985
No 133
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.02 E-value=0.00076 Score=63.50 Aligned_cols=36 Identities=25% Similarity=0.526 Sum_probs=32.8
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
.-+++.|++|+|||+++.++|..+.+.|++|+++++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 367888999999999999999999999999999974
No 134
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=97.00 E-value=0.022 Score=54.95 Aligned_cols=26 Identities=35% Similarity=0.439 Sum_probs=22.7
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFAN 115 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~ 115 (413)
+..++-|-||+||||++.-|.++|+.
T Consensus 90 ~~~~~~gdsg~GKttllL~l~Ialaa 115 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAA 115 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHh
Confidence 45566699999999999999999985
No 135
>PRK05595 replicative DNA helicase; Provisional
Probab=96.93 E-value=0.004 Score=63.97 Aligned_cols=60 Identities=18% Similarity=0.309 Sum_probs=45.4
Q ss_pred ccCCchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHH-HCCCCEEEEecCCCC-CcchH
Q 015096 75 EAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTDPAH-SLSDS 134 (413)
Q Consensus 75 ~~~~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA-~~G~rVLlvD~D~~~-~l~~~ 134 (413)
.++..++.+..+ ...-+++++|.+|+|||+++.|+|..+| ++|++|++++..... .+...
T Consensus 186 tg~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R 248 (444)
T PRK05595 186 SGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYK 248 (444)
T ss_pred CChHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHH
Confidence 344556665543 3346888899999999999999999877 579999999998764 44433
No 136
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.92 E-value=0.002 Score=55.35 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=30.2
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEE-EEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTL-VVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVL-lvD~D~ 127 (413)
+|.|++.| |+||||++..|...|.++|++|. +.+.|.
T Consensus 2 vv~VvG~~-~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 2 VVQVVGPK-NSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp EEEEEEST-TSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 56777655 99999999999999999999999 889987
No 137
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.91 E-value=0.002 Score=59.60 Aligned_cols=31 Identities=45% Similarity=0.560 Sum_probs=25.5
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
..+++-|++|+||||+|.+|+ .++++++.|-
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~-------~~~~~~~~d~ 43 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLP-------GKTLVLSFDM 43 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcC-------CCCEEEeccc
Confidence 346666999999999998874 5789999986
No 138
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.90 E-value=0.0012 Score=58.92 Aligned_cols=37 Identities=30% Similarity=0.419 Sum_probs=34.1
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.++.|.+|+|||+++..++...++.|.+|++++++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 5678999999999999999999999999999998754
No 139
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.87 E-value=0.002 Score=58.94 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=34.6
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
..+..+.|.+|+|||+++..++...+..|.+|+.||++
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 46777779999999999999999999999999999997
No 140
>PRK06696 uridine kinase; Validated
Probab=96.87 E-value=0.0017 Score=60.35 Aligned_cols=41 Identities=27% Similarity=0.346 Sum_probs=36.6
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+.|+.++|.+|+||||+|..|+..|...|.+|+.+.+|--
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 46788888999999999999999999988999999888854
No 141
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.83 E-value=0.0019 Score=58.77 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=35.3
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
..++++.|+.|+||||++..|+..+...|..++++|.|.-+
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 34666669999999999999999999889999999998743
No 142
>PRK05973 replicative DNA helicase; Provisional
Probab=96.81 E-value=0.0017 Score=60.78 Aligned_cols=40 Identities=25% Similarity=0.372 Sum_probs=36.2
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
..+++++|.+|+|||+++.++|...+++|++|++++.+..
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes 103 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT 103 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence 4688888999999999999999999999999999998654
No 143
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=96.80 E-value=0.04 Score=60.57 Aligned_cols=68 Identities=18% Similarity=0.088 Sum_probs=51.1
Q ss_pred eEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCCCCCchHHHHHHHHHHHHHHHHhHhcCCCCCCceEEecCC
Q 015096 315 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLV 394 (413)
Q Consensus 315 ~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~~~~P~~ 394 (413)
-+++|+...--+++.+.-.++.|+..|+++.|+|+|... .. ..++|...-. .+.|++.+|..
T Consensus 216 PvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~~~---~~-----------N~~~l~~~~~----~~~pv~~lp~~ 277 (817)
T PLN02974 216 PAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDHG---LS-----------NEKALLSYLS----NRVPVFVLPPV 277 (817)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeCCc---cc-----------hHHHHHHHHh----cCCcEEeCCCC
Confidence 489999999999999999999999999999999999621 11 1223322211 26888888877
Q ss_pred CCCCCC
Q 015096 395 DVEIRG 400 (413)
Q Consensus 395 ~~e~~g 400 (413)
+..+..
T Consensus 278 p~~~~~ 283 (817)
T PLN02974 278 PEDPGD 283 (817)
T ss_pred CCCcch
Confidence 766654
No 144
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.80 E-value=0.0013 Score=62.12 Aligned_cols=37 Identities=30% Similarity=0.485 Sum_probs=33.8
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
++++.|.+|+||||+|..||..+...|.+|.++|.|.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~ 37 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDL 37 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHH
Confidence 4678899999999999999999998999999998874
No 145
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.78 E-value=0.0016 Score=56.13 Aligned_cols=38 Identities=29% Similarity=0.398 Sum_probs=34.2
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
+++.|++|+||||++..++..++..|.+|++++.+...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 46679999999999999999999999999999998653
No 146
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.74 E-value=0.025 Score=57.40 Aligned_cols=38 Identities=34% Similarity=0.455 Sum_probs=29.1
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHH-C-CCCEEEEecCCC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFAN-N-GHPTLVVSTDPA 128 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~-~-G~rVLlvD~D~~ 128 (413)
++.+-|..|+||||+.+-||..+.. . +.++.++-+|..
T Consensus 193 vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ 232 (420)
T PRK14721 193 VYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSY 232 (420)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 4445599999999999999986543 3 368888888764
No 147
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.71 E-value=0.0025 Score=60.64 Aligned_cols=40 Identities=25% Similarity=0.386 Sum_probs=36.1
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
...+.+++|.+|+|||++|..+|...+++|.+|+.++++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 3567788899999999999999999999999999999974
No 148
>PF13245 AAA_19: Part of AAA domain
Probab=96.67 E-value=0.003 Score=48.30 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=32.1
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHC----CCCEEEEecC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANN----GHPTLVVSTD 126 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~----G~rVLlvD~D 126 (413)
..+.++.|-+|+|||+++++++..+... |++|+++.-.
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 3467778999999999999999999866 8899999754
No 149
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.67 E-value=0.0021 Score=55.75 Aligned_cols=38 Identities=32% Similarity=0.494 Sum_probs=33.7
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
+++.|.+|+||||+|..|+..+...|.++.++|.|..+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 56679999999999999999999989999999988643
No 150
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.66 E-value=0.0022 Score=57.44 Aligned_cols=38 Identities=32% Similarity=0.405 Sum_probs=33.9
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
|+.++|..|+||||+|..|+..+...|.++.+|..|--
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 35667999999999999999999999999999999854
No 151
>PRK06762 hypothetical protein; Provisional
Probab=96.63 E-value=0.0024 Score=56.22 Aligned_cols=36 Identities=36% Similarity=0.564 Sum_probs=30.2
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
..++++.|..|+||||+|..|+..+ |..+.+++.|.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D~ 37 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQDV 37 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHHH
Confidence 4677778999999999999999887 45688888765
No 152
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.62 E-value=0.0023 Score=60.99 Aligned_cols=52 Identities=19% Similarity=0.325 Sum_probs=41.0
Q ss_pred CCchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHHHC-CCCEEEEecCCC
Q 015096 77 VSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDPA 128 (413)
Q Consensus 77 ~~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~-G~rVLlvD~D~~ 128 (413)
+..++.++.+ ....+.+++|.+|+||||++.++|..++.. |.+|+.++++..
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~ 70 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP 70 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC
Confidence 3445544432 224577888999999999999999999887 999999999765
No 153
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.60 E-value=0.0042 Score=59.01 Aligned_cols=59 Identities=31% Similarity=0.510 Sum_probs=47.5
Q ss_pred cCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchH
Q 015096 76 AVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDS 134 (413)
Q Consensus 76 ~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~ 134 (413)
+...+++.+.+ +...+.++.|.+|+|||+++.+++...++.|.+|+.|.+|-.. ++...
T Consensus 8 GI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~ 69 (260)
T COG0467 8 GIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLEN 69 (260)
T ss_pred CCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHH
Confidence 44567777764 4566777789999999999999999999999999999998664 44443
No 154
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.60 E-value=0.0021 Score=53.16 Aligned_cols=31 Identities=29% Similarity=0.588 Sum_probs=24.4
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
+++++|..|+||||+|..||..+ |..++-+|
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~i~~d 31 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPVISMD 31 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEEEEEH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeEEEec
Confidence 46778999999999999999877 55554333
No 155
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.54 E-value=0.004 Score=58.14 Aligned_cols=52 Identities=17% Similarity=0.335 Sum_probs=42.2
Q ss_pred cCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 76 AVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 76 ~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+...++.++.+ ....++++.|..|+|||+++.+++...+++|.+|+.++++-
T Consensus 10 Gi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 10 GNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 44667777753 33556666799999999999999998888999999999964
No 156
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.48 E-value=0.0034 Score=56.44 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=34.1
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHH----------CCCCEEEEecCCCC-CcchHh
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFAN----------NGHPTLVVSTDPAH-SLSDSF 135 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~----------~G~rVLlvD~D~~~-~l~~~l 135 (413)
..+.++.|.+|+||||++.++|.+++. .+.+|+.|+++... .+...+
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl 89 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRL 89 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHH
Confidence 347888899999999999999999997 56799999988653 333333
No 157
>PHA00729 NTP-binding motif containing protein
Probab=96.48 E-value=0.0043 Score=57.47 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=21.3
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFA 114 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA 114 (413)
.-+++.|.+|+||||+|.++|..+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456678999999999999999875
No 158
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.47 E-value=0.0052 Score=57.48 Aligned_cols=41 Identities=24% Similarity=0.439 Sum_probs=37.1
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHC-CCCEEEEecCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDPAH 129 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~-G~rVLlvD~D~~~ 129 (413)
..+.+++|.+|+|||+++.+++..++.. |.+|+.++++...
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~ 54 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSK 54 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCH
Confidence 4588888999999999999999999987 9999999998753
No 159
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=96.46 E-value=0.004 Score=59.08 Aligned_cols=54 Identities=28% Similarity=0.465 Sum_probs=41.8
Q ss_pred cCCchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHHHC-CCCEEEEecCCCC
Q 015096 76 AVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDPAH 129 (413)
Q Consensus 76 ~~~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~-G~rVLlvD~D~~~ 129 (413)
++..++..+.+ ....+.+++|.+|+|||+++.++|..++.. |.+|+.++.+...
T Consensus 5 G~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~ 60 (259)
T PF03796_consen 5 GFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSE 60 (259)
T ss_dssp STHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-H
T ss_pred ChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCH
Confidence 34455555543 234689999999999999999999999997 6999999998763
No 160
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.43 E-value=0.0041 Score=54.39 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=31.5
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+.+.|..|+||||++..|+..|..+|++|.+|..|.
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~ 37 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDH 37 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 344577899999999999999999999999999773
No 161
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.43 E-value=0.0031 Score=56.52 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=28.5
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
+++.|..|+|||.+|.++|..+.++|++|+.++.
T Consensus 50 l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 50 LILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA 83 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred EEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec
Confidence 4455789999999999999999999999999986
No 162
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=96.43 E-value=0.0044 Score=57.64 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=32.1
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
|++|.|++. .|+||||++.+|+..|.++|+||.+|..
T Consensus 1 m~vi~ivG~-~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 1 MRAIGVIGF-KDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred CeEEEEECC-CCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 456777765 5999999999999999999999999964
No 163
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=96.43 E-value=0.035 Score=51.66 Aligned_cols=39 Identities=28% Similarity=0.364 Sum_probs=34.7
Q ss_pred EEEEEeC-CCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 90 KYYMLGG-KGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 90 ~i~v~sg-KGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
-|.|++| -.|.||=.+|++++..|-.+|++|..+=.||.
T Consensus 2 yi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpY 41 (255)
T cd03113 2 YIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPY 41 (255)
T ss_pred EEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeeccc
Confidence 3566666 58999999999999999999999999999997
No 164
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=96.40 E-value=0.0062 Score=52.24 Aligned_cols=55 Identities=20% Similarity=0.378 Sum_probs=44.1
Q ss_pred hhcCCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC-CCcchHhhcc
Q 015096 83 MVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQD 138 (413)
Q Consensus 83 ~~~~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~-~~l~~~lg~~ 138 (413)
++.+.+-+|.++ |-.|+||||+|++|..+|-++|+-+-.+|.|-- +.|..-||..
T Consensus 26 l~~qkGcviWiT-GLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~ 81 (207)
T KOG0635|consen 26 LLKQKGCVIWIT-GLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFK 81 (207)
T ss_pred HhcCCCcEEEEe-ccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcc
Confidence 455566666666 788999999999999999999999999999964 4666655544
No 165
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.38 E-value=0.0044 Score=57.51 Aligned_cols=53 Identities=28% Similarity=0.471 Sum_probs=40.9
Q ss_pred cCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHC-CCCEEEEecCCC
Q 015096 76 AVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDPA 128 (413)
Q Consensus 76 ~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~-G~rVLlvD~D~~ 128 (413)
+...+++++.+ +...+.++.|.+|+|||+++..++...+++ |.+|+.|.++-.
T Consensus 4 GI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~ 59 (226)
T PF06745_consen 4 GIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEP 59 (226)
T ss_dssp SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-
T ss_pred CchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCC
Confidence 44667777753 334677777999999999999999999998 999999999754
No 166
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.36 E-value=0.0031 Score=57.06 Aligned_cols=40 Identities=25% Similarity=0.288 Sum_probs=36.1
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
.+++++|-+|+||||.|-+||..|.+.+.+|.-+..|-..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~ 41 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLR 41 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhh
Confidence 3678889999999999999999999999999999988653
No 167
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.34 E-value=0.0068 Score=56.80 Aligned_cols=53 Identities=25% Similarity=0.467 Sum_probs=43.3
Q ss_pred cCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 76 AVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 76 ~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+...+++++.+ ....++++.|-+|+|||++|..++...+++|.+|+.|+++-.
T Consensus 6 Gi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 6 GIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH 60 (237)
T ss_pred CcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCC
Confidence 34567776653 345677788999999999999999998899999999999864
No 168
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.34 E-value=0.0062 Score=62.14 Aligned_cols=56 Identities=25% Similarity=0.462 Sum_probs=45.2
Q ss_pred cccCCchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHH-HCCCCEEEEecCCCC
Q 015096 74 SEAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTDPAH 129 (413)
Q Consensus 74 ~~~~~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA-~~G~rVLlvD~D~~~ 129 (413)
..++..++.++.+ ...-+++++|.+|+|||+++.++|..+| ++|++|++++++...
T Consensus 178 ~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~ 235 (421)
T TIGR03600 178 STGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSA 235 (421)
T ss_pred eCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH
Confidence 3455667776653 3346888899999999999999999998 679999999998763
No 169
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.30 E-value=0.0083 Score=55.58 Aligned_cols=51 Identities=25% Similarity=0.434 Sum_probs=40.1
Q ss_pred CchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 78 SGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 78 ~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
..+++++.+ ....+.++.|.+|+|||++|..++...+++|.+|+.++++-.
T Consensus 3 ~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~ 55 (224)
T TIGR03880 3 PGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEER 55 (224)
T ss_pred hhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 456666643 224566667889999999999999998889999999999754
No 170
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.27 E-value=0.0077 Score=55.91 Aligned_cols=52 Identities=29% Similarity=0.525 Sum_probs=41.2
Q ss_pred CCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 77 VSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 77 ~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
...++.++.+ ....++++.|.+|+||||++.+++...+++|.+|+.++++..
T Consensus 6 i~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 6 VEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES 59 (229)
T ss_pred hhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 4556666642 234677777999999999999999988889999999998654
No 171
>PF13479 AAA_24: AAA domain
Probab=96.22 E-value=0.014 Score=53.77 Aligned_cols=31 Identities=35% Similarity=0.441 Sum_probs=25.6
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.-+++-|.+|+||||+|..+ .++++||+|..
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g 34 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL--------PKPLFIDTENG 34 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCC
Confidence 44555699999999998877 68999999865
No 172
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.21 E-value=0.0049 Score=60.77 Aligned_cols=37 Identities=27% Similarity=0.405 Sum_probs=33.9
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHH-HCCCCEEEEecCC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTDP 127 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA-~~G~rVLlvD~D~ 127 (413)
++++.|-.|+||||++..|+..|. ..|.+|.++|.|-
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd 38 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDD 38 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccc
Confidence 468889999999999999999998 5899999999994
No 173
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.21 E-value=0.0075 Score=53.61 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=34.1
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
..++++.|-.|+||||+|..++..|...+..+.++|.|.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~ 45 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence 347777899999999999999999998888999998764
No 174
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.18 E-value=0.0072 Score=52.98 Aligned_cols=35 Identities=31% Similarity=0.355 Sum_probs=30.2
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
.|.|+.|. |.||||.|..+|...+.+|+||++|=.
T Consensus 4 ~i~vy~g~-G~Gkt~~a~g~~~ra~~~g~~v~~vQF 38 (159)
T cd00561 4 LIQVYTGN-GKGKTTAALGLALRALGHGYRVGVVQF 38 (159)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 46666666 999999999999999999999999653
No 175
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.16 E-value=0.0089 Score=58.46 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=41.5
Q ss_pred cCCchhhhhc-C--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 76 AVSGFDEMVA-G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 76 ~~~~~~~~~~-~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+...++.++. + +...+..+.|..|+||||+|..++...++.|.+|+.||+.
T Consensus 39 Gi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E 92 (321)
T TIGR02012 39 GSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 92 (321)
T ss_pred CCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEccc
Confidence 4466777775 2 3345666778999999999999999999999999999985
No 176
>PRK12377 putative replication protein; Provisional
Probab=96.13 E-value=0.0073 Score=57.02 Aligned_cols=36 Identities=28% Similarity=0.565 Sum_probs=32.0
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
.-+++.|..|+|||++|.++|..+.+.|++|+.++.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~ 137 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV 137 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH
Confidence 345677999999999999999999999999998876
No 177
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.10 E-value=0.01 Score=53.23 Aligned_cols=40 Identities=28% Similarity=0.368 Sum_probs=35.2
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
..++++.|..|+||||+|..|+..+...|..++++|.|.-
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 4677888999999999999999999888888999998753
No 178
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.07 E-value=0.012 Score=51.66 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=32.6
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
++|.|+ |..|+||||+...|...|...|++|..|-.|..
T Consensus 2 ~vi~i~-G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~ 40 (159)
T cd03116 2 KVIGFV-GYSGSGKTTLLEKLIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 455555 556999999999999999999999999987654
No 179
>PRK08506 replicative DNA helicase; Provisional
Probab=96.00 E-value=0.01 Score=61.49 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=47.3
Q ss_pred ccCCchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchH
Q 015096 75 EAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDS 134 (413)
Q Consensus 75 ~~~~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~ 134 (413)
.++..++.+..+ ....+++++|.+|+|||+++.|+|..++.+|++|++++..... .+...
T Consensus 177 TG~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~R 238 (472)
T PRK08506 177 TGFVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLR 238 (472)
T ss_pred CChHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHH
Confidence 455566666543 3346888999999999999999999999999999999999874 44443
No 180
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.96 E-value=0.012 Score=57.52 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=41.9
Q ss_pred ccCCchhhhhc-C--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 75 EAVSGFDEMVA-G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 75 ~~~~~~~~~~~-~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.+...++.++. + +...|..+.|.+|+||||+|..++...++.|.+++.||+.
T Consensus 38 TGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E 92 (325)
T cd00983 38 TGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAE 92 (325)
T ss_pred CCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcc
Confidence 34456777776 3 3345666778999999999999999999999999999984
No 181
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.95 E-value=0.013 Score=54.82 Aligned_cols=40 Identities=28% Similarity=0.351 Sum_probs=35.2
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
..+..+.|..|+||||+|..++..++++|.+++.++++..
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~ 63 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLT 63 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 3477777999999999999999999999999999998754
No 182
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.95 E-value=0.012 Score=43.91 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=27.4
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
+++.|-.|+||||++..|+..+ .|.++.++|.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 4456999999999999999999 6788888876
No 183
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.95 E-value=0.006 Score=50.53 Aligned_cols=38 Identities=24% Similarity=0.361 Sum_probs=31.5
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+++.|..|+||||++..+|..+...++.++.++++..
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 44555889999999999999999887777888888654
No 184
>PRK04328 hypothetical protein; Provisional
Probab=95.93 E-value=0.014 Score=55.23 Aligned_cols=53 Identities=25% Similarity=0.452 Sum_probs=43.1
Q ss_pred cCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 76 AVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 76 ~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+...+++++.+ ....++.+.|-+|+|||++|..++...+++|.+++.|+++-.
T Consensus 8 Gi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 8 GIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEH 62 (249)
T ss_pred CchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCC
Confidence 44677777764 235667777899999999999999998889999999999754
No 185
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.93 E-value=0.011 Score=54.58 Aligned_cols=39 Identities=15% Similarity=0.329 Sum_probs=33.1
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
...+++.|+.|+|||++|..++..+-+.|.+++.++++-
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 445666689999999999999999888889999999753
No 186
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.89 E-value=0.014 Score=53.49 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=32.5
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
..++..+|..|+||||++..|+..+ .+..+.+++.|..
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~ 43 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVIPQDSY 43 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEEeCCcc
Confidence 4577777999999999999999988 4678999999875
No 187
>PRK06749 replicative DNA helicase; Provisional
Probab=95.87 E-value=0.012 Score=60.11 Aligned_cols=54 Identities=20% Similarity=0.409 Sum_probs=44.3
Q ss_pred cCCchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 76 AVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 76 ~~~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
++..++.+..+ ...-++|++|.+|+|||+++.|+|..+|.+|++|++++.....
T Consensus 172 G~~~LD~~t~Gl~~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~ 226 (428)
T PRK06749 172 GYTSLNKMTCGLQEGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSS 226 (428)
T ss_pred CcHHHHHHhCCCCCCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCH
Confidence 45556655543 3346889999999999999999999999999999999998764
No 188
>PRK08760 replicative DNA helicase; Provisional
Probab=95.86 E-value=0.011 Score=61.09 Aligned_cols=59 Identities=25% Similarity=0.310 Sum_probs=45.9
Q ss_pred ccCCchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHHH-CCCCEEEEecCCCC-Ccch
Q 015096 75 EAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPAH-SLSD 133 (413)
Q Consensus 75 ~~~~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA~-~G~rVLlvD~D~~~-~l~~ 133 (413)
.++..++.+..+ ....+++++|.+|+|||+++.|+|...|. .|++|++++.+... .+..
T Consensus 214 TG~~~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~ 275 (476)
T PRK08760 214 TGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAM 275 (476)
T ss_pred CCcHHHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHH
Confidence 455666766543 33468888999999999999999999885 59999999998764 4443
No 189
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.83 E-value=0.012 Score=52.16 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=29.9
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
.|.++.| .|.||||.|..+|..++.+|+||+++=.
T Consensus 7 li~v~~g-~GkGKtt~a~g~a~ra~~~g~~v~ivQF 41 (173)
T TIGR00708 7 IIIVHTG-NGKGKTTAAFGMALRALGHGKKVGVIQF 41 (173)
T ss_pred EEEEECC-CCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 3555545 8999999999999999999999999854
No 190
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.82 E-value=0.014 Score=59.86 Aligned_cols=52 Identities=25% Similarity=0.507 Sum_probs=43.6
Q ss_pred cCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 76 AVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 76 ~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+...++.++.+ ....+.+++|.+|+||||++..+|..++++|.+|+.+++.-
T Consensus 65 Gi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 65 GIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred CcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 45667777764 33568888899999999999999999998899999999864
No 191
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.81 E-value=0.015 Score=58.14 Aligned_cols=52 Identities=25% Similarity=0.522 Sum_probs=43.3
Q ss_pred ccCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 75 EAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 75 ~~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.+...++.++.+ ....+++++|.+|+||||++..+|..+++.|.+|+.|+..
T Consensus 66 TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 66 TGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred cCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 355677777763 3346888889999999999999999999999999999975
No 192
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=95.80 E-value=0.015 Score=59.52 Aligned_cols=55 Identities=22% Similarity=0.382 Sum_probs=44.5
Q ss_pred ccCCchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHHH-CCCCEEEEecCCCC
Q 015096 75 EAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPAH 129 (413)
Q Consensus 75 ~~~~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA~-~G~rVLlvD~D~~~ 129 (413)
.++..++.++.+ ....+++++|.+|+|||+++.++|..+|. .|++|++++.+...
T Consensus 180 tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~ 236 (434)
T TIGR00665 180 TGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSA 236 (434)
T ss_pred CCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCH
Confidence 455666766543 33468889999999999999999999986 69999999999764
No 193
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=95.80 E-value=0.045 Score=52.21 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=33.7
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
+.+++|..+.......+.++++.++..++|.. +|+|++...
T Consensus 89 D~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~i-ivvNK~D~~ 129 (268)
T cd04170 89 DAALVVVSAQSGVEVGTEKLWEFADEAGIPRI-IFINKMDRE 129 (268)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCccC
Confidence 47889998887777778888999999998764 799998765
No 194
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.80 E-value=0.015 Score=59.94 Aligned_cols=53 Identities=25% Similarity=0.467 Sum_probs=44.0
Q ss_pred ccCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 75 EAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 75 ~~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+...++.++.+ ....+++++|.+|+||||++..+|..+++.|.+|+.|+.+-
T Consensus 78 TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 78 SGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred cCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 345667777753 34567888999999999999999999999999999999864
No 195
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.79 E-value=0.014 Score=60.67 Aligned_cols=54 Identities=20% Similarity=0.318 Sum_probs=45.2
Q ss_pred ccCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 75 EAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 75 ~~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+...++.++.+ ....+.+++|-+|+||||++..++...+++|.+|+.+..+-.
T Consensus 247 tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs 302 (484)
T TIGR02655 247 SGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEES 302 (484)
T ss_pred CChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence 455567777765 445788888999999999999999999999999999998743
No 196
>PRK08006 replicative DNA helicase; Provisional
Probab=95.78 E-value=0.014 Score=60.38 Aligned_cols=60 Identities=18% Similarity=0.298 Sum_probs=46.4
Q ss_pred cccCCchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHHH-CCCCEEEEecCCCC-Ccch
Q 015096 74 SEAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPAH-SLSD 133 (413)
Q Consensus 74 ~~~~~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA~-~G~rVLlvD~D~~~-~l~~ 133 (413)
..++..++.+..+ ...-++|++|.+|+|||++|.|+|..+|. +|++|+++++.... .+..
T Consensus 208 ~TG~~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~ 270 (471)
T PRK08006 208 NTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMM 270 (471)
T ss_pred cCCCHHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHH
Confidence 3455666665543 34578888999999999999999999984 69999999998764 4443
No 197
>PRK04296 thymidine kinase; Provisional
Probab=95.75 E-value=0.017 Score=52.17 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=32.0
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
.|.++.|..|+||||.+..++..++.+|++|+++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 47778899999999999999999999999999993
No 198
>PRK15453 phosphoribulokinase; Provisional
Probab=95.74 E-value=0.017 Score=55.28 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=34.7
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
.|+.++|-.|+||||+|..++..+...|.++.+++.|--+
T Consensus 6 piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh 45 (290)
T PRK15453 6 PIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH 45 (290)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence 4555568899999999999999998888899999999865
No 199
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.024 Score=56.47 Aligned_cols=49 Identities=27% Similarity=0.560 Sum_probs=40.1
Q ss_pred CCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 77 VSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 77 ~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
...++..+.+ -.-.++..+|-+|.||||+-..+|..+|+++ |||.|...
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGE 129 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGE 129 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCC
Confidence 3455555554 3456788899999999999999999999998 99999974
No 200
>PRK06321 replicative DNA helicase; Provisional
Probab=95.71 E-value=0.015 Score=60.10 Aligned_cols=61 Identities=23% Similarity=0.372 Sum_probs=47.4
Q ss_pred cccCCchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHH-HCCCCEEEEecCCCC-CcchH
Q 015096 74 SEAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTDPAH-SLSDS 134 (413)
Q Consensus 74 ~~~~~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA-~~G~rVLlvD~D~~~-~l~~~ 134 (413)
..++..++.+..+ ...-++|++|.+|+|||+++.++|..+| +.|++|++++..... .+...
T Consensus 210 ~tG~~~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~R 273 (472)
T PRK06321 210 PTHFIDLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHR 273 (472)
T ss_pred ccCcHHHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHH
Confidence 3455667777654 3346888899999999999999999998 469999999998864 44443
No 201
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.65 E-value=0.015 Score=54.42 Aligned_cols=38 Identities=26% Similarity=0.262 Sum_probs=30.1
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHH------------CCCCEEEEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFAN------------NGHPTLVVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~------------~G~rVLlvD~D~ 127 (413)
.+.++.|.||+||||++..+|.++|. .+.+|++++++-
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed 51 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAED 51 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCC
Confidence 36778899999999999999999874 344677777653
No 202
>PRK08840 replicative DNA helicase; Provisional
Probab=95.65 E-value=0.016 Score=59.71 Aligned_cols=56 Identities=20% Similarity=0.337 Sum_probs=44.7
Q ss_pred cccCCchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHHH-CCCCEEEEecCCCC
Q 015096 74 SEAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPAH 129 (413)
Q Consensus 74 ~~~~~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA~-~G~rVLlvD~D~~~ 129 (413)
..++..++.+..+ ...-++|++|.+|+|||++|.|+|...|. +|++|+++++.+..
T Consensus 201 ~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~ 258 (464)
T PRK08840 201 DTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPA 258 (464)
T ss_pred CCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCH
Confidence 3455556666543 34578889999999999999999999984 69999999998764
No 203
>PRK05439 pantothenate kinase; Provisional
Probab=95.64 E-value=0.02 Score=55.75 Aligned_cols=42 Identities=21% Similarity=0.163 Sum_probs=35.0
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHH--CCCCEEEEecCCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFAN--NGHPTLVVSTDPAH 129 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~--~G~rVLlvD~D~~~ 129 (413)
...|+-++|-.|+||||+|..|+..+.+ .|.+|.+|..|--.
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 3466667799999999999999998876 47899999999653
No 204
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.64 E-value=0.016 Score=55.05 Aligned_cols=38 Identities=29% Similarity=0.438 Sum_probs=33.9
Q ss_pred EEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 015096 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS 130 (413)
Q Consensus 93 v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~ 130 (413)
-++|-.|+||||++..++..|.+.|.+|.+|+.|.-+.
T Consensus 3 gItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 3 AVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 34688999999999999999998999999999998754
No 205
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.64 E-value=0.015 Score=56.76 Aligned_cols=35 Identities=29% Similarity=0.330 Sum_probs=31.4
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
=+++.|..|+|||.++.++|..++++|++|.++..
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~ 192 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF 192 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH
Confidence 45566899999999999999999999999999876
No 206
>PRK00089 era GTPase Era; Reviewed
Probab=95.63 E-value=0.12 Score=49.96 Aligned_cols=40 Identities=25% Similarity=0.205 Sum_probs=26.6
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
+.+++|......--.....+++.++..+.|+. +|+|++.-
T Consensus 86 D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvi-lVlNKiDl 125 (292)
T PRK00089 86 DLVLFVVDADEKIGPGDEFILEKLKKVKTPVI-LVLNKIDL 125 (292)
T ss_pred CEEEEEEeCCCCCChhHHHHHHHHhhcCCCEE-EEEECCcC
Confidence 46777777765333445666777776676664 88999754
No 207
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.62 E-value=0.014 Score=55.92 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=28.8
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+++++|-+|+||||.|..|+..+.+.|.+|.+|+-|
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~ 38 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDD 38 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-TH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 678889999999999999999999999999999954
No 208
>PRK05748 replicative DNA helicase; Provisional
Probab=95.60 E-value=0.016 Score=59.55 Aligned_cols=62 Identities=21% Similarity=0.332 Sum_probs=47.0
Q ss_pred cccCCchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHHH-CCCCEEEEecCCCC-CcchHh
Q 015096 74 SEAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPAH-SLSDSF 135 (413)
Q Consensus 74 ~~~~~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA~-~G~rVLlvD~D~~~-~l~~~l 135 (413)
..++..++.+..+ ....+++++|.+|+|||+++.++|...|. .|++|++++..... .+...+
T Consensus 187 ~TG~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~ 251 (448)
T PRK05748 187 PTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRM 251 (448)
T ss_pred cCChHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHH
Confidence 3445566666543 33468888999999999999999999885 69999999998874 444433
No 209
>PRK06904 replicative DNA helicase; Validated
Probab=95.58 E-value=0.015 Score=60.05 Aligned_cols=55 Identities=24% Similarity=0.358 Sum_probs=44.0
Q ss_pred ccCCchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHHH-CCCCEEEEecCCCC
Q 015096 75 EAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPAH 129 (413)
Q Consensus 75 ~~~~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA~-~G~rVLlvD~D~~~ 129 (413)
.++..++.+..+ ...-++|++|.+|+|||+++.|+|...|. .|++|++++..+..
T Consensus 206 TG~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~ 262 (472)
T PRK06904 206 TGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPA 262 (472)
T ss_pred CChHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 445556666543 33468889999999999999999999885 59999999999764
No 210
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=95.58 E-value=0.017 Score=58.39 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=31.6
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
|++|.|++-| |+||||+...|...|..+|+||.+|=-
T Consensus 1 MkVi~IvG~s-gSGKTTLiekLI~~L~~rG~rVavIKH 37 (452)
T PRK14495 1 MRVYGIIGWK-DAGKTGLVERLVAAIAARGFSVSTVKH 37 (452)
T ss_pred CcEEEEEecC-CCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4677777654 999999999999999999999999643
No 211
>PRK08233 hypothetical protein; Provisional
Probab=95.57 E-value=0.011 Score=52.48 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=26.8
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.|+.++|.+|+||||+|..|+..+. +.+++..|.+-
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~--~~~~~~~d~~~ 39 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK--NSKALYFDRYD 39 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC--CCceEEECCEE
Confidence 3445556669999999999998874 34777777764
No 212
>PRK09354 recA recombinase A; Provisional
Probab=95.56 E-value=0.022 Score=56.25 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=42.3
Q ss_pred ccCCchhhhhc-C--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 75 EAVSGFDEMVA-G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 75 ~~~~~~~~~~~-~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.+...++.++. + +...|..+.|..|+||||+|..++...+..|.+++.||+.
T Consensus 43 TGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E 97 (349)
T PRK09354 43 TGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 97 (349)
T ss_pred CCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCc
Confidence 34466777777 3 3345666778999999999999999999999999999985
No 213
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.55 E-value=0.014 Score=57.52 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=32.1
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
.-+++.|..|+|||++|.++|..+..+|++|+.+++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH
Confidence 345666899999999999999999999999999987
No 214
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=95.53 E-value=1.3 Score=40.07 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=32.8
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
+.+++|..+..-.-...++.+..+...|++..-+++|++.-
T Consensus 90 D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~ 130 (195)
T cd01884 90 DGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADM 130 (195)
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCC
Confidence 47888888876666778889999999998755688999764
No 215
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.52 E-value=0.024 Score=47.36 Aligned_cols=38 Identities=32% Similarity=0.449 Sum_probs=31.9
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
...+++.|.+|+||||++..++..+...+.++..++++
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehh
Confidence 34566679999999999999999998778888888764
No 216
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.49 E-value=0.022 Score=52.61 Aligned_cols=51 Identities=25% Similarity=0.343 Sum_probs=39.3
Q ss_pred CCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCC------CCEEEEecCC
Q 015096 77 VSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNG------HPTLVVSTDP 127 (413)
Q Consensus 77 ~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G------~rVLlvD~D~ 127 (413)
...++.++.+ ....+..+.|.+|+|||+++..+|...+..| .+|+.||++-
T Consensus 5 ~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 5 SKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred cHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 3456666642 2345666678999999999999999988777 8999999863
No 217
>PRK09165 replicative DNA helicase; Provisional
Probab=95.49 E-value=0.018 Score=59.91 Aligned_cols=60 Identities=22% Similarity=0.338 Sum_probs=46.2
Q ss_pred ccCCchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHHHC---------------CCCEEEEecCCCC-CcchH
Q 015096 75 EAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFANN---------------GHPTLVVSTDPAH-SLSDS 134 (413)
Q Consensus 75 ~~~~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~---------------G~rVLlvD~D~~~-~l~~~ 134 (413)
.++..++.++.+ ....+++++|.+|+||||+|.|+|...|.. |++|++++..... .+...
T Consensus 202 TG~~~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R 278 (497)
T PRK09165 202 TGLRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATR 278 (497)
T ss_pred CChHHHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHH
Confidence 455667776653 334688889999999999999999999863 7899999998764 44443
No 218
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.46 E-value=0.018 Score=52.17 Aligned_cols=38 Identities=32% Similarity=0.461 Sum_probs=31.7
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCC----EEEEecCCC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHP----TLVVSTDPA 128 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~r----VLlvD~D~~ 128 (413)
|+-++|-+|+||||+|..|+..|.+.|.+ +.++..|-.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~ 42 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDF 42 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeeccc
Confidence 45567999999999999999999988876 777777654
No 219
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.44 E-value=0.19 Score=42.82 Aligned_cols=40 Identities=25% Similarity=0.204 Sum_probs=27.6
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
+.+++|............++.+.+...+.++ -+|+|+..-
T Consensus 84 d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~-iiv~nK~Dl 123 (168)
T cd04163 84 DLVLFVVDASEPIGEGDEFILELLKKSKTPV-ILVLNKIDL 123 (168)
T ss_pred CEEEEEEECCCccCchHHHHHHHHHHhCCCE-EEEEEchhc
Confidence 4678887776554455566677777777765 589999643
No 220
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.42 E-value=0.021 Score=53.05 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=38.6
Q ss_pred CCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHC------CCCEEEEecCC
Q 015096 77 VSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANN------GHPTLVVSTDP 127 (413)
Q Consensus 77 ~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~------G~rVLlvD~D~ 127 (413)
...++.++.+ ....+..+.|.+|+|||+++..++...+.. +.+|+.||++-
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 3456666653 334677778999999999999999876544 37999999875
No 221
>PRK08727 hypothetical protein; Validated
Probab=95.41 E-value=0.019 Score=53.73 Aligned_cols=37 Identities=24% Similarity=0.413 Sum_probs=33.0
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
..+++.|+.|+|||.++.+++..+.++|++|..+.++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 3477779999999999999999999999999999864
No 222
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.40 E-value=2.7 Score=46.71 Aligned_cols=36 Identities=19% Similarity=0.465 Sum_probs=30.4
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
++..+++ ...|+||||.-..+++.+|.+|+|+++|=
T Consensus 97 g~SFaii-APTGvGKTTfg~~~sl~~a~kgkr~yii~ 132 (1187)
T COG1110 97 GKSFAII-APTGVGKTTFGLLMSLYLAKKGKRVYIIV 132 (1187)
T ss_pred CCceEEE-cCCCCchhHHHHHHHHHHHhcCCeEEEEe
Confidence 3556666 56799999999999999999999998874
No 223
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=95.40 E-value=0.13 Score=43.86 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=27.1
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
+.+++|..+..........+.+.++..+.++ -+|+|++.-
T Consensus 78 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~pi-iiv~nK~D~ 117 (157)
T cd01894 78 DVILFVVDGREGLTPADEEIAKYLRKSKKPV-ILVVNKVDN 117 (157)
T ss_pred CEEEEEEeccccCCccHHHHHHHHHhcCCCE-EEEEECccc
Confidence 4788888775433333456777788888765 589999753
No 224
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.39 E-value=0.023 Score=53.23 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=33.7
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
..+++.|..|+|||+++.+++..+.+.|++|..+..|-
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 45677799999999999999999998999999999864
No 225
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.38 E-value=0.029 Score=49.94 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=32.8
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
..++.+.|..|+||||+...+...|..+|.||..|--+.
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~ 44 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 345666688999999999999999999999999887543
No 226
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.33 E-value=0.02 Score=51.82 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=29.9
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+.++|..|+||||+|..|+..+ .+.++.++++|.-
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~ 36 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSY 36 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEeccc
Confidence 4567889999999999999888 5678999999964
No 227
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.32 E-value=0.023 Score=52.72 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=31.2
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHH--CCCCEEEEecCCC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFAN--NGHPTLVVSTDPA 128 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~--~G~rVLlvD~D~~ 128 (413)
+-++|..|+||||+|..|+..+.. .+.+|.+|..|--
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 345699999999999999999875 5678999999865
No 228
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.29 E-value=0.02 Score=49.97 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=29.7
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
+.|.| +|.+||||||++.-+|-.|.+.|++|.=+=+
T Consensus 6 mki~I-TG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t 41 (179)
T COG1618 6 MKIFI-TGRPGVGKTTLVLKIAEKLREKGYKVGGFIT 41 (179)
T ss_pred eEEEE-eCCCCccHHHHHHHHHHHHHhcCceeeeEEe
Confidence 44555 5999999999999999999999998875443
No 229
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.28 E-value=0.024 Score=52.52 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=33.6
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
..+++.|..|+|||+++..++..+...|.++..++++.
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 45677799999999999999999988999999999854
No 230
>PRK05642 DNA replication initiation factor; Validated
Probab=95.23 E-value=0.022 Score=53.28 Aligned_cols=37 Identities=24% Similarity=0.507 Sum_probs=32.7
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
..++..|+.|+|||.++.+++..+.++|++|+.++++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence 3567779999999999999999998889999999975
No 231
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.45 Score=46.20 Aligned_cols=51 Identities=24% Similarity=0.296 Sum_probs=42.5
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHH----CCCCEEEEecCCCCCcchHhhcc
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFAN----NGHPTLVVSTDPAHSLSDSFAQD 138 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~----~G~rVLlvD~D~~~~l~~~lg~~ 138 (413)
..+++.+-|.+|+|||+++-+||..|+- +.++..+|+.+-..=.+.||+..
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsES 230 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSES 230 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhh
Confidence 3678888899999999999999999983 34688999987776778888765
No 232
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.23 E-value=0.018 Score=50.58 Aligned_cols=33 Identities=30% Similarity=0.346 Sum_probs=26.1
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+..+++.|.+|+||||+|..||..+ |. .++|.|
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l---~~--~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL---GY--DFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh---CC--CEEECh
Confidence 3467777999999999999999987 43 455765
No 233
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=95.22 E-value=0.23 Score=49.27 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=33.9
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
++.+.+.+.-.|||||.++.+|+..|-++|.||.++-
T Consensus 2 ~~~l~l~p~~~~~G~tsi~lgLl~~l~~k~~kva~~k 38 (354)
T COG0857 2 SRTLLLIPTETGVGKTSISLGLLRALEQKGLKVAYFK 38 (354)
T ss_pred cceEEEeccCCCccHHHHHHHHHHHHHHcCceeEEEe
Confidence 4678888999999999999999999999999998865
No 234
>PRK07004 replicative DNA helicase; Provisional
Probab=95.17 E-value=0.027 Score=58.08 Aligned_cols=59 Identities=22% Similarity=0.347 Sum_probs=45.4
Q ss_pred ccCCchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHHH-CCCCEEEEecCCCC-Ccch
Q 015096 75 EAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPAH-SLSD 133 (413)
Q Consensus 75 ~~~~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA~-~G~rVLlvD~D~~~-~l~~ 133 (413)
.++..++.+..+ ....+++++|.+|+|||+++.++|..+|. .|++|+++++.+.. .+..
T Consensus 198 TG~~~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~ 259 (460)
T PRK07004 198 TGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAM 259 (460)
T ss_pred CCcHHhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHH
Confidence 345556665542 33468888999999999999999999884 69999999999874 4444
No 235
>PRK06893 DNA replication initiation factor; Validated
Probab=95.16 E-value=0.027 Score=52.55 Aligned_cols=37 Identities=11% Similarity=0.288 Sum_probs=33.2
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
..+++.|+.|+|||+++.++|..+.++|.+|..++++
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 3567779999999999999999999999999999974
No 236
>COG4240 Predicted kinase [General function prediction only]
Probab=95.16 E-value=0.034 Score=51.14 Aligned_cols=40 Identities=25% Similarity=0.314 Sum_probs=36.2
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCC-CCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNG-HPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G-~rVLlvD~D~ 127 (413)
..-|+.+||.-|+||||+|+.+-..|+++| .+|+-.+.|-
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDD 89 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDD 89 (300)
T ss_pred CceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhh
Confidence 357888999999999999999999999998 7999999873
No 237
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.14 E-value=0.02 Score=52.45 Aligned_cols=35 Identities=37% Similarity=0.565 Sum_probs=27.5
Q ss_pred EEEEeCCCcchhhHHHHHHHHHH--------HHCCCCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKF--------ANNGHPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~l--------A~~G~rVLlvD~ 125 (413)
+.++.|-+|+||||+.++++..+ ...++++|++.-
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~ 61 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSP 61 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEES
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecC
Confidence 78899999999999999999888 456788888874
No 238
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=95.11 E-value=0.22 Score=46.90 Aligned_cols=40 Identities=28% Similarity=0.483 Sum_probs=33.0
Q ss_pred cEEEEEeC-CCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 89 RKYYMLGG-KGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 89 ~~i~v~sg-KGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
|-|.|++| -.|.||=.+|++++..|-.+|++|.++=.||.
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPY 42 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPY 42 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-S
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccc
Confidence 56777777 59999999999999999999999999999997
No 239
>PRK12740 elongation factor G; Reviewed
Probab=95.10 E-value=0.12 Score=56.02 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=32.7
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
+.+++|..+...........+..+...++++. +|+|++...
T Consensus 85 D~vllvvd~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~D~~ 125 (668)
T PRK12740 85 DGAVVVVCAVGGVEPQTETVWRQAEKYGVPRI-IFVNKMDRA 125 (668)
T ss_pred CeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEECCCCC
Confidence 47899998877666777788888888898865 799998654
No 240
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.09 E-value=0.018 Score=50.16 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=20.8
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHH
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFA 114 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA 114 (413)
++..||++|+||||+|.-||-.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 567899999999999999988763
No 241
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.09 E-value=0.015 Score=49.41 Aligned_cols=32 Identities=34% Similarity=0.543 Sum_probs=25.9
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
++++.|.+|+||||+|..++..+. ..+||.|-
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~ 32 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDE 32 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHH
Confidence 567889999999999998876553 67788774
No 242
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.08 E-value=0.035 Score=50.01 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=31.5
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
.++++-|-.|+||||.+..|+..+...|++|..+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 39 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTRE 39 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 467778999999999999999999999999876653
No 243
>PRK05636 replicative DNA helicase; Provisional
Probab=95.07 E-value=0.03 Score=58.34 Aligned_cols=55 Identities=15% Similarity=0.352 Sum_probs=43.8
Q ss_pred ccCCchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHH-HCCCCEEEEecCCCC
Q 015096 75 EAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTDPAH 129 (413)
Q Consensus 75 ~~~~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA-~~G~rVLlvD~D~~~ 129 (413)
.++..|+.+..+ ....+++++|.+|+|||++|.++|...| +.|++|++++.....
T Consensus 250 TG~~~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~ 306 (505)
T PRK05636 250 TGFKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSK 306 (505)
T ss_pred cChHHHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCH
Confidence 355566666543 3356888899999999999999999888 468999999998764
No 244
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.01 E-value=0.034 Score=49.79 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=30.5
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
++++.|..|+||||++..|+..+...|.+|..+.-
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 56677999999999999999999999999876654
No 245
>PRK10490 sensor protein KdpD; Provisional
Probab=95.00 E-value=0.65 Score=52.13 Aligned_cols=43 Identities=28% Similarity=0.336 Sum_probs=35.3
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEE--EEecCCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTL--VVSTDPAH 129 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVL--lvD~D~~~ 129 (413)
.++-=++++.-+|||||+-..+-|..+.++|..|+ +|++--+.
T Consensus 22 ~g~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~h~r~ 66 (895)
T PRK10490 22 RGKLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVETHGRK 66 (895)
T ss_pred CCcEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeCCCCH
Confidence 45666788899999999999999999999999985 56654443
No 246
>PF05729 NACHT: NACHT domain
Probab=94.99 E-value=0.024 Score=49.11 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=24.8
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGH 118 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~ 118 (413)
++++.|.+|+||||++..++..++..+.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~ 29 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEP 29 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCc
Confidence 6778899999999999999999998653
No 247
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.94 E-value=0.04 Score=57.28 Aligned_cols=53 Identities=21% Similarity=0.400 Sum_probs=42.8
Q ss_pred cCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHC-CCCEEEEecCCC
Q 015096 76 AVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDPA 128 (413)
Q Consensus 76 ~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~-G~rVLlvD~D~~ 128 (413)
+..++++++.+ ....+..+.|-+|+||||+|..++..-+++ |.+++.|..+-.
T Consensus 6 GI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~ 61 (484)
T TIGR02655 6 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES 61 (484)
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 45678888764 345677778999999999999999887666 999999998743
No 248
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.92 E-value=0.035 Score=50.43 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=30.4
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
..+.++.|.+|+||||+...++..+...|++|+++..
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 3567778999999999999999999999999998864
No 249
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.90 E-value=0.023 Score=48.90 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=26.3
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
|+++.|..|+||||+|..|+..+ | ..++|.|.-
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~---~--~~~i~~D~~ 33 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL---G--APFIDGDDL 33 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc---C--CEEEeCccc
Confidence 46778999999999999998864 2 356788764
No 250
>PRK08116 hypothetical protein; Validated
Probab=94.88 E-value=0.035 Score=53.10 Aligned_cols=36 Identities=33% Similarity=0.420 Sum_probs=31.8
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
.-+++.|..|+|||.+|.++|..+.++|++|+.++.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~ 150 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF 150 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 346677999999999999999999988999998884
No 251
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.88 E-value=0.85 Score=41.82 Aligned_cols=40 Identities=28% Similarity=0.372 Sum_probs=36.0
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.-.+++.-|-.|+|||-++..+++-+-+.|++|..|.+-.
T Consensus 27 ~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~ 66 (235)
T COG2874 27 VGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTEL 66 (235)
T ss_pred cCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEech
Confidence 3567888899999999999999999999999999999854
No 252
>PRK06921 hypothetical protein; Provisional
Probab=94.86 E-value=0.033 Score=53.21 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=31.1
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHC-CCCEEEEec
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVST 125 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~-G~rVLlvD~ 125 (413)
.-+++.|..|+|||+++.++|..+.++ |++|+.+++
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 345666899999999999999999987 999988885
No 253
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=94.85 E-value=0.2 Score=51.00 Aligned_cols=40 Identities=28% Similarity=0.402 Sum_probs=35.8
Q ss_pred cEEEEEeC-CCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 89 RKYYMLGG-KGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 89 ~~i~v~sg-KGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
|-|.|++| -.|.||=.+|++||..|..+|++|-++-.||.
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPY 42 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPY 42 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccc
Confidence 45667766 58999999999999999999999999999997
No 254
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=94.83 E-value=0.14 Score=45.23 Aligned_cols=41 Identities=10% Similarity=0.117 Sum_probs=30.0
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
+.+++|............+.+..+...+.++ -+|+|++.-.
T Consensus 87 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i-~iv~nK~D~~ 127 (189)
T cd00881 87 DGAILVVDANEGVQPQTREHLRIAREGGLPI-IVAINKIDRV 127 (189)
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHHCCCCe-EEEEECCCCc
Confidence 4788888887655566677777777777765 5899997543
No 255
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.73 E-value=0.046 Score=57.23 Aligned_cols=54 Identities=24% Similarity=0.469 Sum_probs=43.6
Q ss_pred ccCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHC-CCCEEEEecCCC
Q 015096 75 EAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDPA 128 (413)
Q Consensus 75 ~~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~-G~rVLlvD~D~~ 128 (413)
.+...+++++.+ ....+.++.|-+|+|||+++.+++...+.+ |.+|+.|+++-.
T Consensus 15 TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~ 71 (509)
T PRK09302 15 TGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEES 71 (509)
T ss_pred CCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 345677877753 335677777999999999999999988887 999999999864
No 256
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=94.66 E-value=0.059 Score=58.70 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=32.9
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
+-+.+.-|-+|+||||+=+.|-..|...|+||||..-
T Consensus 685 edy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsy 721 (1100)
T KOG1805|consen 685 EDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSY 721 (1100)
T ss_pred cchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEeh
Confidence 4466666999999999999999999999999999884
No 257
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.63 E-value=0.056 Score=50.30 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=34.6
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEE-EecCCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLV-VSTDPAH 129 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLl-vD~D~~~ 129 (413)
...|+.++|..|+||||++..|+..+...+..+.+ +..|.-.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~ 74 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH 74 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence 45677778999999999999999999987777666 8877643
No 258
>COG1159 Era GTPase [General function prediction only]
Probab=94.49 E-value=2.3 Score=40.90 Aligned_cols=48 Identities=27% Similarity=0.258 Sum_probs=35.2
Q ss_pred HHHhcCCCCceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 305 RELFRDTDSTEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 305 ~~~l~d~~~t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
+..+.|. +-+++|+..+..--..-+..++.|+..+.|+. +++|++...
T Consensus 80 ~~sl~dv--Dlilfvvd~~~~~~~~d~~il~~lk~~~~pvi-l~iNKID~~ 127 (298)
T COG1159 80 RSALKDV--DLILFVVDADEGWGPGDEFILEQLKKTKTPVI-LVVNKIDKV 127 (298)
T ss_pred HHHhccC--cEEEEEEeccccCCccHHHHHHHHhhcCCCeE-EEEEccccC
Confidence 4455554 47888888877555678888899998666764 889998644
No 259
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.48 E-value=0.033 Score=53.84 Aligned_cols=36 Identities=28% Similarity=0.303 Sum_probs=29.6
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
|+.++++.|.+|+||||+|..|+..+. ....+|.|-
T Consensus 1 m~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~ 36 (300)
T PHA02530 1 MMKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDD 36 (300)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccH
Confidence 357888899999999999999988762 467888875
No 260
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.47 E-value=0.039 Score=50.27 Aligned_cols=35 Identities=34% Similarity=0.377 Sum_probs=28.1
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
..+++++|.+|+||||+|..||..+ |..+ ++..|.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~---~~~~-~~~~D~ 37 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR---AIDI-VLSGDY 37 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---CCeE-EehhHH
Confidence 3578888999999999999999875 5543 778775
No 261
>PRK00093 GTP-binding protein Der; Reviewed
Probab=94.41 E-value=0.34 Score=49.52 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=26.4
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
+.+++|..+.......-..+.++++..+.++. +|+|++..
T Consensus 82 d~il~vvd~~~~~~~~~~~~~~~l~~~~~pii-lv~NK~D~ 121 (435)
T PRK00093 82 DVILFVVDGRAGLTPADEEIAKILRKSNKPVI-LVVNKVDG 121 (435)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCcEE-EEEECccC
Confidence 46777777754333333456677777787764 88999763
No 262
>PRK08118 topology modulation protein; Reviewed
Probab=94.40 E-value=0.039 Score=48.83 Aligned_cols=24 Identities=38% Similarity=0.696 Sum_probs=19.1
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHH
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
++|+|+ |-+|+||||+|..|+..+
T Consensus 2 ~rI~I~-G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILI-GSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 445554 899999999999998765
No 263
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.40 E-value=0.063 Score=51.11 Aligned_cols=43 Identities=30% Similarity=0.410 Sum_probs=34.3
Q ss_pred EEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhcc
Q 015096 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQD 138 (413)
Q Consensus 93 v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~ 138 (413)
++.|..|+|||++|..+|..+ |.++..+.++..-..++++|..
T Consensus 25 LL~G~~GtGKT~lA~~la~~l---g~~~~~i~~~~~~~~~dllg~~ 67 (262)
T TIGR02640 25 HLRGPAGTGKTTLAMHVARKR---DRPVMLINGDAELTTSDLVGSY 67 (262)
T ss_pred EEEcCCCCCHHHHHHHHHHHh---CCCEEEEeCCccCCHHHHhhhh
Confidence 346999999999999998743 8999999998765666776643
No 264
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=94.40 E-value=0.14 Score=49.01 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=32.5
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
+.+++|+......-..+.++++.++..++|+. +++|++.-.
T Consensus 89 D~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~ 129 (270)
T cd01886 89 DGAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKMDRT 129 (270)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCC
Confidence 46788888766556677899999999999885 899998643
No 265
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.38 E-value=0.065 Score=56.11 Aligned_cols=54 Identities=26% Similarity=0.425 Sum_probs=42.4
Q ss_pred ccCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 75 EAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 75 ~~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+...++.++.+ ....+.++.|-.|+|||+++.+++...+.+|.+|+.|+.+-.
T Consensus 257 tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~ 312 (509)
T PRK09302 257 SGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEES 312 (509)
T ss_pred CCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 455567777753 223455557999999999999999999999999999998643
No 266
>PF12846 AAA_10: AAA-like domain
Probab=94.38 E-value=0.053 Score=51.87 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=30.3
Q ss_pred EEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 93 v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
++.|+.|+||||+..++...+...|.+++++|..
T Consensus 5 ~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~ 38 (304)
T PF12846_consen 5 LILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPK 38 (304)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4459999999999999999999999999999544
No 267
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.35 E-value=0.034 Score=45.98 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.0
Q ss_pred EEEeCCCcchhhHHHHHHHHHH
Q 015096 92 YMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~l 113 (413)
++++|..|+||||+|..|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999988
No 268
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=94.35 E-value=0.46 Score=44.49 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=31.3
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
+.+++|.......-..+.++++.+++.++|.. +++|++.-.
T Consensus 89 D~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~i-ivvNK~D~~ 129 (237)
T cd04168 89 DGAILVISAVEGVQAQTRILWRLLRKLNIPTI-IFVNKIDRA 129 (237)
T ss_pred CeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECcccc
Confidence 36777877765555678888999999999875 899997543
No 269
>PRK06851 hypothetical protein; Provisional
Probab=94.34 E-value=0.067 Score=53.28 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=35.6
Q ss_pred CCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 86 ~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
...+++.++.|.+|+||||+...++..+.++|.+|.+.=+
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC 250 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHC 250 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 4557788888999999999999999999999999988765
No 270
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.33 E-value=0.068 Score=45.28 Aligned_cols=44 Identities=27% Similarity=0.388 Sum_probs=36.0
Q ss_pred EEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccc
Q 015096 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDL 139 (413)
Q Consensus 93 v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~ 139 (413)
++.|..|+|||+++-.+|..+ +.++..+.+....+..+++|...
T Consensus 3 lL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~~~dl~g~~~ 46 (139)
T PF07728_consen 3 LLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTTEEDLIGSYD 46 (139)
T ss_dssp EEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTSTHHHHHCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHh---hcceEEEEeccccccccceeeee
Confidence 456999999999999999999 88999998887777777777543
No 271
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=94.33 E-value=0.53 Score=44.97 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=29.6
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
+.+++|..+...--..+.++++.++..++|+ -+++|++.-
T Consensus 96 D~~IlVvda~~g~~~~~~~i~~~~~~~~~P~-iivvNK~D~ 135 (267)
T cd04169 96 DSAVMVIDAAKGVEPQTRKLFEVCRLRGIPI-ITFINKLDR 135 (267)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHhcCCCE-EEEEECCcc
Confidence 4788888775544456678888888889885 588999754
No 272
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.31 E-value=0.044 Score=49.80 Aligned_cols=40 Identities=25% Similarity=0.459 Sum_probs=29.7
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
..++++++.|-+|+||||++..+...+. +...+.||+|--
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~ 52 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEF 52 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHH
Confidence 4578999999999999999998877665 667899999864
No 273
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=94.31 E-value=0.06 Score=57.92 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=37.5
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
+..++++.|..|+||||+|..|+..|...|..+.++|.|--+
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r 500 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVR 500 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhh
Confidence 457888899999999999999999998889999999998754
No 274
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.30 E-value=0.067 Score=52.18 Aligned_cols=50 Identities=26% Similarity=0.349 Sum_probs=37.6
Q ss_pred CchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHH------CCCCEEEEecCC
Q 015096 78 SGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFAN------NGHPTLVVSTDP 127 (413)
Q Consensus 78 ~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~------~G~rVLlvD~D~ 127 (413)
..++.++.+ ....+..+.|.+|+|||+++..+|...+. .+.+|+.||+.-
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 456666653 33567777799999999999999988763 233899999863
No 275
>COG2403 Predicted GTPase [General function prediction only]
Probab=94.30 E-value=0.072 Score=52.29 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=39.8
Q ss_pred hhhhcCCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 81 DEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 81 ~~~~~~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
.+++.-...+|.|++..-|+|||+++..+|..|.++|+||++|-.
T Consensus 119 et~~~~ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrh 163 (449)
T COG2403 119 ETMLKLEKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRH 163 (449)
T ss_pred HHhhhhcCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEec
Confidence 345545667999999999999999999999999999999999987
No 276
>PRK06547 hypothetical protein; Provisional
Probab=94.25 E-value=0.053 Score=48.24 Aligned_cols=35 Identities=31% Similarity=0.445 Sum_probs=25.6
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
....++.+.|..|+||||+|..||..+ | +.+++.|
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~---~--~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART---G--FQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh---C--CCeeccc
Confidence 334566667999999999999998763 3 4455555
No 277
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.22 E-value=0.038 Score=46.03 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=26.7
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHC-----CCCEEEEec
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANN-----GHPTLVVST 125 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~-----G~rVLlvD~ 125 (413)
+.++++.|..|+|||+++.+++..+... ..+|+.+++
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNC 45 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEe
Confidence 4677888999999999999999998764 455665554
No 278
>PRK06217 hypothetical protein; Validated
Probab=94.18 E-value=0.06 Score=48.19 Aligned_cols=31 Identities=32% Similarity=0.502 Sum_probs=24.4
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++.|-+|+||||+|..||..+ |.+ .+|+|-
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l---~~~--~~~~D~ 34 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERL---DIP--HLDTDD 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc---CCc--EEEcCc
Confidence 4556899999999999999766 443 688874
No 279
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.17 E-value=0.057 Score=53.72 Aligned_cols=38 Identities=26% Similarity=0.481 Sum_probs=32.6
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHH--HHCCCCEEEEecC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKF--ANNGHPTLVVSTD 126 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~l--A~~G~rVLlvD~D 126 (413)
|.++++.|.+|+|||.+|.++|..+ ...+.+++++...
T Consensus 1 K~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n 40 (352)
T PF09848_consen 1 KQVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGN 40 (352)
T ss_pred CeEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEec
Confidence 4688899999999999999999999 6777887777654
No 280
>PF13173 AAA_14: AAA domain
Probab=94.12 E-value=0.062 Score=45.10 Aligned_cols=37 Identities=32% Similarity=0.399 Sum_probs=30.4
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+.++.|.-||||||++..++..+- ...+++.+|.|-
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~ 39 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDD 39 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCC
Confidence 4666778889999999999998877 567889998864
No 281
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=94.06 E-value=0.087 Score=50.96 Aligned_cols=37 Identities=32% Similarity=0.551 Sum_probs=29.6
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
....+++++|..|+||||+|..||..| |.. .+|.+|.
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l---~~~-~vi~~D~ 126 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL---GIR-SVIGTDS 126 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh---CCC-EEEechH
Confidence 345678889999999999999999888 555 3677875
No 282
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.06 E-value=0.41 Score=39.02 Aligned_cols=37 Identities=19% Similarity=0.304 Sum_probs=25.7
Q ss_pred CceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEec
Q 015096 313 STEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQ 351 (413)
Q Consensus 313 ~t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~ 351 (413)
.+.+++|...+.........+++.++ .+.++ -+|+|+
T Consensus 80 ~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~-i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNPITEDDKNILRELK-NKKPI-ILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSHSHHHHHHHHHHHH-TTSEE-EEEEES
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHh-cCCCE-EEEEcC
Confidence 35788888877733456777878886 55554 578885
No 283
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.05 E-value=0.045 Score=49.39 Aligned_cols=33 Identities=24% Similarity=0.215 Sum_probs=26.5
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+.++|..|+||||+|..|+..+. .+.+|+.|--
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~----~~~~i~~Ddf 34 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILP----NCCVIHQDDF 34 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC----CCeEEccccc
Confidence 45669999999999999998762 4778888843
No 284
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.03 E-value=0.083 Score=47.69 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=29.5
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
|.|+ +-.|.||||.|..+|..++.+|.+|++|=.
T Consensus 25 v~v~-~g~GkGKtt~a~g~a~ra~g~G~~V~ivQF 58 (191)
T PRK05986 25 LIVH-TGNGKGKSTAAFGMALRAVGHGKKVGVVQF 58 (191)
T ss_pred EEEE-CCCCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 4444 567899999999999999999999999975
No 285
>PLN02796 D-glycerate 3-kinase
Probab=94.03 E-value=0.075 Score=52.38 Aligned_cols=39 Identities=23% Similarity=0.271 Sum_probs=33.6
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
..|+.++|..|+||||++..|+..+...|.++..|..|-
T Consensus 100 pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDd 138 (347)
T PLN02796 100 PLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDD 138 (347)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECC
Confidence 466777799999999999999999988788888888774
No 286
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.98 E-value=0.096 Score=50.61 Aligned_cols=42 Identities=19% Similarity=0.164 Sum_probs=33.8
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHC--CCCEEEEecCCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANN--GHPTLVVSTDPAH 129 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~--G~rVLlvD~D~~~ 129 (413)
...|+-+.|-.|+||||+|..|...+.+. +.+|.++..|--.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 35677778999999999999888888743 4579999999754
No 287
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.87 E-value=0.076 Score=44.03 Aligned_cols=30 Identities=37% Similarity=0.575 Sum_probs=24.8
Q ss_pred EEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 93 v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
++.|..|+||||++..+|..+ |.+++-+|+
T Consensus 2 ll~G~~G~GKT~l~~~la~~l---~~~~~~i~~ 31 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL---GFPFIEIDG 31 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT---TSEEEEEET
T ss_pred EEECcCCCCeeHHHHHHHhhc---ccccccccc
Confidence 567999999999999999987 566666665
No 288
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.84 E-value=0.078 Score=56.13 Aligned_cols=39 Identities=28% Similarity=0.467 Sum_probs=34.1
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHH-CCCCEEEEecCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPA 128 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~-~G~rVLlvD~D~~ 128 (413)
.++++.|-.|+||||+|..||..|.. .|.++.++|.|.-
T Consensus 393 ~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 393 FTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred eEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 45566799999999999999999987 7888999999954
No 289
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.83 E-value=0.083 Score=51.76 Aligned_cols=50 Identities=24% Similarity=0.321 Sum_probs=38.1
Q ss_pred CchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHC------CCCEEEEecCC
Q 015096 78 SGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANN------GHPTLVVSTDP 127 (413)
Q Consensus 78 ~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~------G~rVLlvD~D~ 127 (413)
..++.++.+ ....+..+.|.+|+|||+++..+|...+.. +.+|+.||++-
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 456666653 345677777999999999999999887653 34899999964
No 290
>PRK06761 hypothetical protein; Provisional
Probab=93.82 E-value=0.063 Score=51.58 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=32.3
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEE-EecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLV-VSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLl-vD~D~ 127 (413)
..++++.|..|+||||++..|+..+...|.++-. .+.|+
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~ 42 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNL 42 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCC
Confidence 3578888999999999999999999888888765 45554
No 291
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=93.81 E-value=0.094 Score=52.93 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=34.8
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
...|+-++|-.|+||||++..|...+...|.+|..|..|--
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDf 251 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDF 251 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCc
Confidence 34677788999999999999998888777889999988743
No 292
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=93.78 E-value=0.086 Score=51.47 Aligned_cols=38 Identities=26% Similarity=0.206 Sum_probs=33.7
Q ss_pred CcEEEEEeCC-CcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 88 QRKYYMLGGK-GGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 88 ~~~i~v~sgK-GGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
..+|+|-|-- ||+|||.++..||..|.++|+++.+|+=
T Consensus 28 vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSR 66 (311)
T TIGR00682 28 VPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSR 66 (311)
T ss_pred CCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECC
Confidence 3678876665 9999999999999999999999999985
No 293
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=93.76 E-value=0.098 Score=51.17 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=40.3
Q ss_pred ccCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHH------CCCCEEEEecCC
Q 015096 75 EAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFAN------NGHPTLVVSTDP 127 (413)
Q Consensus 75 ~~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~------~G~rVLlvD~D~ 127 (413)
.+...++.++.+ ....|.-+.|..|+|||+++..+|...+. .|.+|+.||+.-
T Consensus 80 TG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 80 TGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 344667877764 44567777899999999999999976542 356999999863
No 294
>PRK13946 shikimate kinase; Provisional
Probab=93.73 E-value=0.068 Score=47.93 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=26.6
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
..+++.|-.|+||||++..||..| |.+ .+|+|.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L---g~~--~id~D~ 43 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML---GLP--FLDADT 43 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc---CCC--eECcCH
Confidence 456667899999999999999888 555 678874
No 295
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=93.68 E-value=0.67 Score=44.18 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=27.1
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
+.+++|..+......+ ..+++.++..+.|+ -+|+|++.-
T Consensus 81 Dvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~-ilV~NK~Dl 119 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG-EFVLTKLQNLKRPV-VLTRNKLDN 119 (270)
T ss_pred CEEEEEEECCCCCchH-HHHHHHHHhcCCCE-EEEEECeeC
Confidence 4678888776543333 66777888888776 488999653
No 296
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=93.65 E-value=0.086 Score=51.78 Aligned_cols=38 Identities=29% Similarity=0.263 Sum_probs=32.7
Q ss_pred cEEEEEeC-CCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 89 RKYYMLGG-KGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 89 ~~i~v~sg-KGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.+|+|-|- .||+|||++...||..|.++|++|.+|.=.
T Consensus 50 pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRG 88 (325)
T PRK00652 50 PVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRG 88 (325)
T ss_pred CEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCC
Confidence 56766443 799999999999999999999999999854
No 297
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.63 E-value=0.089 Score=48.09 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=29.8
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
..++.++|..|+||||++..|+..+.. ..+.++..|..
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~ 43 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNY 43 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence 356667799999999999999987753 46777887764
No 298
>PRK07773 replicative DNA helicase; Validated
Probab=93.62 E-value=0.085 Score=58.95 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=43.8
Q ss_pred ccCCchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHHHC-CCCEEEEecCCCC
Q 015096 75 EAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDPAH 129 (413)
Q Consensus 75 ~~~~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~-G~rVLlvD~D~~~ 129 (413)
.++..++.+..+ ...-+++++|.+|+|||++|.|+|...|.+ |++|++++++...
T Consensus 202 TG~~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~ 258 (886)
T PRK07773 202 TGFTELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSK 258 (886)
T ss_pred CChhHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCH
Confidence 345566666543 234688889999999999999999999864 8999999998764
No 299
>PRK07933 thymidylate kinase; Validated
Probab=93.56 E-value=0.11 Score=47.80 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=32.0
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
++++-|--|+||||.+..|+.+|..+|++|.++.-
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~ 36 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAF 36 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 56778999999999999999999999999998875
No 300
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=93.52 E-value=0.14 Score=48.58 Aligned_cols=44 Identities=20% Similarity=0.184 Sum_probs=37.6
Q ss_pred CCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCC--EEEEecCCCC
Q 015096 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHP--TLVVSTDPAH 129 (413)
Q Consensus 86 ~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~r--VLlvD~D~~~ 129 (413)
...+.|+-.+|-.||||||+|..|+..+++.+.+ |-+|-+|--+
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFh 124 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFH 124 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccc
Confidence 3556788888999999999999999999998765 9999999554
No 301
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.49 E-value=0.13 Score=51.00 Aligned_cols=53 Identities=23% Similarity=0.234 Sum_probs=41.1
Q ss_pred cccCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHH----C--CCCEEEEecC
Q 015096 74 SEAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFAN----N--GHPTLVVSTD 126 (413)
Q Consensus 74 ~~~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~----~--G~rVLlvD~D 126 (413)
..+...++.++.+ ....|.-+.|..|+|||+++..+|...+. . +.+|+.||+.
T Consensus 109 sTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE 169 (344)
T PLN03187 109 TTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTE 169 (344)
T ss_pred cCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcC
Confidence 3455678888774 45677878899999999999999987653 2 2599999995
No 302
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=93.48 E-value=0.2 Score=45.94 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=26.7
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
+.+++|............+.++.+...+.++ -+|+|++.-
T Consensus 96 D~~llVvD~~~~~~~~~~~~~~~~~~~~~p~-iiviNK~D~ 135 (213)
T cd04167 96 DGVVLVVDVVEGVTSNTERLIRHAILEGLPI-VLVINKIDR 135 (213)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEECccc
Confidence 4778888775444345566666666667664 589999763
No 303
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=93.45 E-value=0.12 Score=47.79 Aligned_cols=37 Identities=19% Similarity=0.408 Sum_probs=32.5
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHH-HCCCCEEEEecC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTD 126 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA-~~G~rVLlvD~D 126 (413)
+.++|+ |+-|+|||+++..|...+. +.|.+++++|..
T Consensus 24 ~H~~I~-G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~ 61 (229)
T PF01935_consen 24 RHIAIF-GTTGSGKSNTVKVLLEELLKKKGAKVIIFDPH 61 (229)
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 456766 8889999999999999999 889999999964
No 304
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.45 E-value=0.082 Score=46.85 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=25.0
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEE
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLV 122 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLl 122 (413)
++.+|+.|+||||+...+...+...|.+|-=
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~G 32 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPVGG 32 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCccce
Confidence 4567999999999999999999887776543
No 305
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.44 E-value=0.11 Score=45.65 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=33.3
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
++++.|+ |.-|+||||+.-.+...|.++|+||.+|=-+..
T Consensus 2 ~~Il~iv-G~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 2 MKILGIV-GYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CcEEEEE-ecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 4567776 566899999999999999999999999975443
No 306
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.33 E-value=0.068 Score=46.68 Aligned_cols=31 Identities=32% Similarity=0.524 Sum_probs=24.8
Q ss_pred EEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 93 v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
++.|..|+||||+|..|+..+ | ..++|.|--
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l---~--~~~v~~D~~ 32 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRL---G--AKFIEGDDL 32 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhc---C--CeEEeCccc
Confidence 466999999999999999876 3 456788753
No 307
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=93.30 E-value=0.1 Score=56.01 Aligned_cols=35 Identities=26% Similarity=0.474 Sum_probs=31.9
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
-++++.|.+|+||||+.+.+...+.++|++||++.
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a 208 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTA 208 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 46778899999999999999999999999999987
No 308
>PRK07261 topology modulation protein; Provisional
Probab=93.29 E-value=0.1 Score=46.32 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=16.6
Q ss_pred EeCCCcchhhHHHHHHHHHH
Q 015096 94 LGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 94 ~sgKGGvGKTTvAa~LA~~l 113 (413)
+.|.+|+||||+|..|+..+
T Consensus 5 i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 5 IIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEcCCCCCHHHHHHHHHHHh
Confidence 34899999999999987654
No 309
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.27 E-value=0.14 Score=55.79 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=48.1
Q ss_pred ccCCchhhhhc-C--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC--CcchHhhcc
Q 015096 75 EAVSGFDEMVA-G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH--SLSDSFAQD 138 (413)
Q Consensus 75 ~~~~~~~~~~~-~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~--~l~~~lg~~ 138 (413)
.+...++.++. + ....+..+.|..|+||||++..++...+..|.+|+.||+.-.- ..+..+|++
T Consensus 43 TGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvD 111 (790)
T PRK09519 43 TGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVD 111 (790)
T ss_pred CCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCC
Confidence 34567788776 2 3356777789999999999999999988999999999986542 334445544
No 310
>PTZ00301 uridine kinase; Provisional
Probab=93.12 E-value=0.17 Score=46.59 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=30.1
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHH-CCC-CEEEEecCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFAN-NGH-PTLVVSTDPA 128 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~-~G~-rVLlvD~D~~ 128 (413)
.|+-++|-+|+||||+|..|+..+.. .|. .|.++..|-.
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~y 44 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFY 44 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence 56667799999999999999988854 343 4668888765
No 311
>PRK12338 hypothetical protein; Provisional
Probab=93.10 E-value=0.097 Score=51.11 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=28.3
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
..+++++|.+|+||||+|..||..+ |.+ .+++.|.-
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l---~~~-~~~~tD~~ 39 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL---NIK-HLIETDFI 39 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC---CCe-EEccChHH
Confidence 3678888999999999999999877 443 36677753
No 312
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=93.09 E-value=0.13 Score=47.10 Aligned_cols=35 Identities=23% Similarity=0.453 Sum_probs=26.1
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCC--CEEEE
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGH--PTLVV 123 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~--rVLlv 123 (413)
..++++.|+.|+|||++|.+.|..+...|. |++++
T Consensus 19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~ 55 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIIT 55 (205)
T ss_dssp -SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 358888899999999999999998887764 44444
No 313
>PRK00698 tmk thymidylate kinase; Validated
Probab=92.85 E-value=0.19 Score=45.37 Aligned_cols=35 Identities=17% Similarity=0.329 Sum_probs=29.3
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
.++++.|--|+||||++..|+..|...|+.|....
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~ 38 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTR 38 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEee
Confidence 46777799999999999999999988887666543
No 314
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.82 E-value=0.084 Score=44.84 Aligned_cols=31 Identities=35% Similarity=0.555 Sum_probs=24.2
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
|++++|..|+||||+|..||..+ |.. ++|.|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~---~~~--~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL---GLP--YLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---CCc--eeccc
Confidence 45778999999999999999776 433 56665
No 315
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=92.80 E-value=0.59 Score=45.80 Aligned_cols=41 Identities=20% Similarity=0.209 Sum_probs=32.4
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.++++-++ |..|+||||++..+...+.+.|..++.||+.-.
T Consensus 52 ~G~ivEi~-G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ 92 (322)
T PF00154_consen 52 RGRIVEIY-GPESSGKTTLALHAIAEAQKQGGICAFIDAEHA 92 (322)
T ss_dssp TTSEEEEE-ESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS-
T ss_pred cCceEEEe-CCCCCchhhhHHHHHHhhhcccceeEEecCccc
Confidence 34666666 567999999999999988889999999998543
No 316
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=92.76 E-value=0.12 Score=49.45 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=29.6
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCC-C-CEEEEecCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNG-H-PTLVVSTDPA 128 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G-~-rVLlvD~D~~ 128 (413)
....++.+.|-||+||||+|..++.....++ + .+.-++....
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~ 60 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKN 60 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccc
Confidence 4466777779999999999999997755332 2 4566665433
No 317
>PRK13947 shikimate kinase; Provisional
Probab=92.73 E-value=0.14 Score=44.91 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=24.7
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++.|-+|+||||+|..||..| |.+ .+|.|.
T Consensus 4 I~l~G~~GsGKst~a~~La~~l---g~~--~id~d~ 34 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTL---SFG--FIDTDK 34 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh---CCC--EEECch
Confidence 4566999999999999999877 555 477774
No 318
>PRK03839 putative kinase; Provisional
Probab=92.73 E-value=0.12 Score=45.99 Aligned_cols=30 Identities=37% Similarity=0.452 Sum_probs=23.1
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+++.|-+|+||||++..||..+ |. -.+|+|
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~---~~--~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKL---GY--EYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CC--cEEehh
Confidence 5556999999999999998877 33 346665
No 319
>PLN02327 CTP synthase
Probab=92.64 E-value=0.99 Score=47.17 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=36.1
Q ss_pred cEEEEEeC-CCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 89 RKYYMLGG-KGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 89 ~~i~v~sg-KGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
|-|.|++| -.|.||=.+|++++..|-.+|++|..+=.||.
T Consensus 2 k~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPY 42 (557)
T PLN02327 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPY 42 (557)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccc
Confidence 55677766 58999999999999999999999999999997
No 320
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.63 E-value=0.13 Score=45.52 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=19.3
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEE
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTL 121 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVL 121 (413)
+.+.|-+||||||+|--|+ +.|+++.
T Consensus 3 I~ITGTPGvGKTT~~~~L~----~lg~~~i 28 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR----ELGYKVI 28 (180)
T ss_pred EEEeCCCCCchHHHHHHHH----HhCCcee
Confidence 3445899999999998887 3455554
No 321
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=92.61 E-value=0.19 Score=49.69 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=39.1
Q ss_pred ccCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHH------CCCCEEEEecCC
Q 015096 75 EAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFAN------NGHPTLVVSTDP 127 (413)
Q Consensus 75 ~~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~------~G~rVLlvD~D~ 127 (413)
.+...++.++.+ ....|..+.|.+|+|||+++..+|...+. .+.+|+.||+.-
T Consensus 107 tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~ 167 (342)
T PLN03186 107 TGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEG 167 (342)
T ss_pred CCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCC
Confidence 445567776664 34567777899999999999999976542 123899999963
No 322
>PTZ00035 Rad51 protein; Provisional
Probab=92.61 E-value=0.18 Score=49.90 Aligned_cols=53 Identities=21% Similarity=0.242 Sum_probs=39.9
Q ss_pred ccCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHH------CCCCEEEEecCC
Q 015096 75 EAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFAN------NGHPTLVVSTDP 127 (413)
Q Consensus 75 ~~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~------~G~rVLlvD~D~ 127 (413)
.+...++.++.+ ....+..+.|..|+|||+++..++..... .+.+|+.||+.-
T Consensus 102 TG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 102 TGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 445677888764 34567777799999999999999877652 456899999853
No 323
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=92.60 E-value=0.21 Score=44.52 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=30.8
Q ss_pred hcCCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 84 VAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 84 ~~~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
....+. |.|+.| .|=||||-|..+|+..+-+|+||++|=.
T Consensus 18 ~~~~Gl-i~VYtG-dGKGKTTAAlGlalRAaG~G~rV~iiQF 57 (178)
T PRK07414 18 YTIEGL-VQVFTS-SQRNFFTSVMAQALRIAGQGTPVLIVQF 57 (178)
T ss_pred CCCCCE-EEEEeC-CCCCchHHHHHHHHHHhcCCCEEEEEEE
Confidence 334444 444434 3679999999999999999999999975
No 324
>PLN02924 thymidylate kinase
Probab=92.50 E-value=0.22 Score=46.16 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=31.8
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
..++++-|-.|+||||.+..|+..|..+|.+|.++.
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ 51 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWR 51 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeee
Confidence 457777899999999999999999999999986654
No 325
>PRK04040 adenylate kinase; Provisional
Probab=92.44 E-value=0.13 Score=46.53 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=21.8
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFA 114 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA 114 (413)
.++++.|.+|+||||++..|+..+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 4667779999999999999998885
No 326
>PRK06851 hypothetical protein; Provisional
Probab=92.41 E-value=0.25 Score=49.33 Aligned_cols=41 Identities=22% Similarity=0.430 Sum_probs=35.0
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEE--ecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVV--STDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlv--D~D~ 127 (413)
..+.+.+++|-+|+||||+...++..+.+.|+.|-.+ ..|+
T Consensus 28 ~~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~ 70 (367)
T PRK06851 28 GANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDN 70 (367)
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 4567889999999999999999999999999987655 5665
No 327
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=92.40 E-value=0.13 Score=50.75 Aligned_cols=38 Identities=26% Similarity=0.233 Sum_probs=32.5
Q ss_pred cEEEEEeC-CCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 89 RKYYMLGG-KGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 89 ~~i~v~sg-KGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.+|+|-|- -||+|||.++..||..|.++|++|.+|+=.
T Consensus 57 PVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRG 95 (338)
T PRK01906 57 PVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRG 95 (338)
T ss_pred CEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecC
Confidence 56666443 699999999999999999999999999853
No 328
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=92.39 E-value=0.22 Score=40.96 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=27.1
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHC--CCCEEEEe
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANN--GHPTLVVS 124 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~--G~rVLlvD 124 (413)
+++.+..|+|||+++..++..+... +.+++++-
T Consensus 3 ~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 3 VLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred EEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 4667999999999999999999873 45777764
No 329
>PRK09866 hypothetical protein; Provisional
Probab=92.38 E-value=1.4 Score=46.96 Aligned_cols=41 Identities=12% Similarity=0.052 Sum_probs=27.8
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCC-CCCeEEEecccC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENV-PVKRLIVNQIIP 354 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~-~~~gvVvN~v~p 354 (413)
+.+++|+.....--..-..+.+.+++.+- ...-+|+|++.-
T Consensus 260 DvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl 301 (741)
T PRK09866 260 SAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQ 301 (741)
T ss_pred CEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccC
Confidence 57889998875333333567788888773 134589999864
No 330
>PRK15494 era GTPase Era; Provisional
Probab=92.37 E-value=1.3 Score=43.79 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=23.8
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
+.+++|......--.....+++.++..+.++. +|+|++.-
T Consensus 133 Dvil~VvD~~~s~~~~~~~il~~l~~~~~p~I-lViNKiDl 172 (339)
T PRK15494 133 DLVLLIIDSLKSFDDITHNILDKLRSLNIVPI-FLLNKIDI 172 (339)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhcCCCEE-EEEEhhcC
Confidence 46777766543222222456667777776664 78898653
No 331
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.28 E-value=0.19 Score=44.41 Aligned_cols=42 Identities=26% Similarity=0.426 Sum_probs=29.4
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
...++++.|..|+|||++...+...+...+.-++-++++..+
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~~ 64 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDSE 64 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEeccc
Confidence 346777889999999999999999998875448888887763
No 332
>PRK05380 pyrG CTP synthetase; Validated
Probab=92.27 E-value=0.89 Score=47.34 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=36.6
Q ss_pred CcEEEEEeC-CCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYMLGG-KGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~sg-KGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+|-|.|++| -.|.||=.+|++++..|-.+|++|-.+=.||.
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpY 43 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPY 43 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccc
Confidence 356677766 58999999999999999999999999999997
No 333
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=92.22 E-value=0.18 Score=46.36 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=31.3
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+|+-.+|-+|+||||+|..|...|-.. ++.+|..|-.
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~Y 45 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDY 45 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeecccc
Confidence 666677899999999999999888643 8999999865
No 334
>PRK13948 shikimate kinase; Provisional
Probab=92.18 E-value=0.19 Score=45.08 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=26.6
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
...+++.|-.|+||||++..||..| |.+ +||+|.
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~l---g~~--~iD~D~ 43 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRAL---MLH--FIDTDR 43 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHc---CCC--EEECCH
Confidence 3556677999999999999998877 454 459984
No 335
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=92.17 E-value=0.26 Score=50.11 Aligned_cols=55 Identities=22% Similarity=0.433 Sum_probs=42.8
Q ss_pred ccCCchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHHHC-CCCEEEEecCCCC
Q 015096 75 EAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDPAH 129 (413)
Q Consensus 75 ~~~~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~-G~rVLlvD~D~~~ 129 (413)
.++..|+.+..+ ...-++++++.+|.|||++|.|+|..+|.. +++|+++++-+..
T Consensus 181 tgf~~LD~~t~G~~~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM~~ 237 (435)
T COG0305 181 TGFTDLDEITSGFRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEMSE 237 (435)
T ss_pred cCchhhHHHhcCCccCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEccCCH
Confidence 445556655554 345688899999999999999999999974 5679999987653
No 336
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=92.16 E-value=1.2 Score=46.45 Aligned_cols=40 Identities=25% Similarity=0.436 Sum_probs=36.2
Q ss_pred cEEEEEeC-CCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 89 RKYYMLGG-KGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 89 ~~i~v~sg-KGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
|-|.|++| -.|.||=.+|++++..|-.+|++|..+=.||.
T Consensus 2 k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (525)
T TIGR00337 2 KYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPY 42 (525)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccc
Confidence 55677766 58999999999999999999999999999997
No 337
>PRK13973 thymidylate kinase; Provisional
Probab=92.15 E-value=0.24 Score=45.57 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=30.9
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
.++++-|--|+||||.+-.|+.+|..+|++|....
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~ 38 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTR 38 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56677899999999999999999999999987664
No 338
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=92.13 E-value=2.7 Score=38.94 Aligned_cols=40 Identities=15% Similarity=0.099 Sum_probs=32.8
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
+.+++|...+........+.+..+...|+|+ -+|+|++.-
T Consensus 111 D~~llVvda~~g~~~~d~~~l~~l~~~~ip~-ivvvNK~D~ 150 (224)
T cd04165 111 DYAMLVVAANAGIIGMTKEHLGLALALNIPV-FVVVTKIDL 150 (224)
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHHcCCCE-EEEEECccc
Confidence 4678888877666788899999999999996 689999754
No 339
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.11 E-value=0.17 Score=48.87 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=26.7
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCC----CEEEEec
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGH----PTLVVST 125 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~----rVLlvD~ 125 (413)
+++.|.+|+||||+|..+|..+.+.|. .++-+++
T Consensus 61 vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 61 MSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 555699999999999999999988765 3454553
No 340
>PRK00049 elongation factor Tu; Reviewed
Probab=92.08 E-value=5.1 Score=40.56 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=32.7
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
+.+++|..+..-....+++.+..+...|++..-+++|++.-
T Consensus 100 D~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~ 140 (396)
T PRK00049 100 DGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCC
Confidence 57888888876666778889999999998875568999764
No 341
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=92.05 E-value=0.14 Score=41.68 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.1
Q ss_pred EEeCCCcchhhHHHHHHHHHHHHC
Q 015096 93 MLGGKGGVGKTSCAASLAVKFANN 116 (413)
Q Consensus 93 v~sgKGGvGKTTvAa~LA~~lA~~ 116 (413)
.+.|.+|+|||++|..||..+.+.
T Consensus 2 ~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 2 WIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHH
Confidence 456899999999999999999864
No 342
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.04 E-value=0.14 Score=45.40 Aligned_cols=34 Identities=32% Similarity=0.463 Sum_probs=25.4
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.|++++|-+|+||||+|-.|+..+. ...+-++.|
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~---~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA---EPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC---CCccccCcc
Confidence 4788899999999999999987653 223444555
No 343
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=91.90 E-value=0.17 Score=47.42 Aligned_cols=37 Identities=35% Similarity=0.555 Sum_probs=29.1
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
....|++.+|-.||||||+|.-+|..|. -+ -++++|-
T Consensus 87 ~~p~IILIGGasGVGkStIA~ElA~rLg---I~-~visTD~ 123 (299)
T COG2074 87 KRPLIILIGGASGVGKSTIAGELARRLG---IR-SVISTDS 123 (299)
T ss_pred CCCeEEEecCCCCCChhHHHHHHHHHcC---Cc-eeecchH
Confidence 3368999999999999999999998773 33 4567773
No 344
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=91.85 E-value=0.15 Score=50.17 Aligned_cols=38 Identities=24% Similarity=0.165 Sum_probs=32.9
Q ss_pred CcEEEEEeC-CCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 88 QRKYYMLGG-KGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 88 ~~~i~v~sg-KGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
..+|+|-|- -||+|||-++..||..|.++|+++.+|+=
T Consensus 35 vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSR 73 (326)
T PF02606_consen 35 VPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSR 73 (326)
T ss_pred CcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcC
Confidence 356776554 59999999999999999999999999985
No 345
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=91.83 E-value=0.18 Score=44.31 Aligned_cols=31 Identities=39% Similarity=0.522 Sum_probs=24.3
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++.|-.|+||||++..||..+ |. -++|.|.
T Consensus 5 i~~~G~~GsGKst~~~~la~~l---g~--~~~d~D~ 35 (171)
T PRK03731 5 LFLVGARGCGKTTVGMALAQAL---GY--RFVDTDQ 35 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CC--CEEEccH
Confidence 4445999999999999999877 44 4578874
No 346
>CHL00181 cbbX CbbX; Provisional
Probab=91.74 E-value=0.19 Score=48.49 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=23.2
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGH 118 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~ 118 (413)
+++.|.+|+||||+|..+|..+...|.
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~g~ 88 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKLGY 88 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 556799999999999999999877654
No 347
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.63 E-value=0.32 Score=44.20 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=26.3
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHC-CCCEEEEe
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVS 124 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~-G~rVLlvD 124 (413)
+++++|..|+||||+...++..+... +.+++.++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e 37 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE 37 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc
Confidence 67788999999999999998888754 34555444
No 348
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=91.53 E-value=0.26 Score=49.36 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=33.5
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+++|.|+ |..|+||||+...|...|.++|++|.+|=-|..
T Consensus 205 ~~~~~~~-g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h 244 (366)
T PRK14489 205 PPLLGVV-GYSGTGKTTLLEKLIPELIARGYRIGLIKHSHH 244 (366)
T ss_pred ccEEEEe-cCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCc
Confidence 4455554 788999999999999999999999999987643
No 349
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=91.50 E-value=0.21 Score=51.35 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=31.1
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+++.|..|+|||+++.++|..+.+.|.+|+.++++
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 45558889999999999999999899999999975
No 350
>PLN02200 adenylate kinase family protein
Probab=91.47 E-value=0.2 Score=46.94 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.9
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHH
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
..++++.|.+|+||||+|..||..+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678888999999999999998765
No 351
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=91.42 E-value=0.42 Score=43.63 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=34.1
Q ss_pred hcCCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 84 VAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 84 ~~~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
++..+..++.+.|-.|+||||+-..++..+. .+.+|.++..|..
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~ 60 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVI 60 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCC
Confidence 3344456677778999999999999988764 4679999998764
No 352
>COG1160 Predicted GTPases [General function prediction only]
Probab=91.33 E-value=1.5 Score=44.46 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=31.1
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
+.+++|+....--..+=+.+.+.|+..+.|+ -+|+|++...
T Consensus 85 DvilfvVD~~~Git~~D~~ia~~Lr~~~kpv-iLvvNK~D~~ 125 (444)
T COG1160 85 DVILFVVDGREGITPADEEIAKILRRSKKPV-ILVVNKIDNL 125 (444)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCE-EEEEEcccCc
Confidence 5788999887755556667788888777777 4899998654
No 353
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=91.31 E-value=0.15 Score=45.37 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=22.7
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
+++.|.+|+||||+|..||..+ | ...|++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~---~--~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF---G--FTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc---C--CeEEEC
Confidence 5667999999999999998866 3 455665
No 354
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=91.25 E-value=0.23 Score=50.42 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=31.5
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHC--CCCEEEEecC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANN--GHPTLVVSTD 126 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~--G~rVLlvD~D 126 (413)
.+++.|..|+|||+++.+++..+.++ |.+|+.++++
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 46777999999999999999999876 7899999864
No 355
>PLN02348 phosphoribulokinase
Probab=91.18 E-value=0.38 Score=48.25 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=34.8
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCC---------------CCEEEEecCCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNG---------------HPTLVVSTDPAH 129 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G---------------~rVLlvD~D~~~ 129 (413)
..++|+-++|-.|+||||+|..|+..|...+ ..+.+|.+|-.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh 104 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH 104 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence 3456777889999999999999999997542 468899998665
No 356
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=91.05 E-value=0.23 Score=48.47 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=27.4
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+.+++++|..|+|||++|..||..+ ...+|++|-
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~-----~~~iis~Ds 37 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRL-----NGEIISADS 37 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhC-----CCcEEeccc
Confidence 4578888999999999999998765 245777774
No 357
>PRK13808 adenylate kinase; Provisional
Probab=90.93 E-value=4.7 Score=39.76 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=17.7
Q ss_pred EEEEeCCCcchhhHHHHHHHHHH
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
|+| .|-+|+||||+|..||..+
T Consensus 3 Iiv-~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 3 LIL-LGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHh
Confidence 444 5789999999999998755
No 358
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=90.77 E-value=0.24 Score=50.02 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=27.5
Q ss_pred CCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCE
Q 015096 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPT 120 (413)
Q Consensus 86 ~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rV 120 (413)
....-|+| +|-+|.||||+|.+||-.++.+|+=|
T Consensus 261 eraeGILI-AG~PGaGKsTFaqAlAefy~~~GkiV 294 (604)
T COG1855 261 ERAEGILI-AGAPGAGKSTFAQALAEFYASQGKIV 294 (604)
T ss_pred hhhcceEE-ecCCCCChhHHHHHHHHHHHhcCcEE
Confidence 34455554 58999999999999999999999833
No 359
>PRK00625 shikimate kinase; Provisional
Probab=90.76 E-value=0.22 Score=44.28 Aligned_cols=30 Identities=37% Similarity=0.340 Sum_probs=23.7
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+++.|-.|+||||++..||..+ |. -.+|+|
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l---~~--~~id~D 32 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFL---SL--PFFDTD 32 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CC--CEEEhh
Confidence 5566999999999999998877 43 347776
No 360
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=90.75 E-value=0.39 Score=42.66 Aligned_cols=39 Identities=28% Similarity=0.493 Sum_probs=32.2
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHH-HCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA-~~G~rVLlvD~D~ 127 (413)
+..+++.|-.|||||.+|-.||..+- ....+.+.+|+-.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~ 42 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSE 42 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhc
Confidence 45677789999999999999999998 5666788888743
No 361
>PRK13949 shikimate kinase; Provisional
Probab=90.66 E-value=0.25 Score=43.73 Aligned_cols=31 Identities=26% Similarity=0.482 Sum_probs=23.7
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.|+++ |-.|+||||++..||..+. .-.+|+|
T Consensus 3 ~I~li-G~~GsGKstl~~~La~~l~-----~~~id~D 33 (169)
T PRK13949 3 RIFLV-GYMGAGKTTLGKALARELG-----LSFIDLD 33 (169)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHcC-----CCeeccc
Confidence 44444 8899999999999998773 3467776
No 362
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=90.65 E-value=0.29 Score=46.62 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=32.5
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
.+..++++|..|+||||+..++...+-..+.+++.|+-
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd 163 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIED 163 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEES
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEecc
Confidence 36788888999999999999998888777688888883
No 363
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=90.65 E-value=0.24 Score=47.01 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=22.1
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNG 117 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G 117 (413)
+++.|.+|+||||+|..+|..+...|
T Consensus 45 vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 45 MIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 45569999999999999999887654
No 364
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=90.60 E-value=0.26 Score=42.26 Aligned_cols=30 Identities=40% Similarity=0.516 Sum_probs=23.4
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+++.|..|+||||+|..||..+ |.+ .+|+|
T Consensus 2 i~l~G~~GsGKstla~~la~~l---~~~--~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL---GLP--FVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh---CCC--EEEch
Confidence 3556999999999999999877 444 45665
No 365
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=90.52 E-value=0.46 Score=46.54 Aligned_cols=53 Identities=23% Similarity=0.291 Sum_probs=38.6
Q ss_pred ccCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHH---CC---CCEEEEecCC
Q 015096 75 EAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFAN---NG---HPTLVVSTDP 127 (413)
Q Consensus 75 ~~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~---~G---~rVLlvD~D~ 127 (413)
.+...++.++.+ ....|..+.|..|+||||++..++...+. .| .+|+.||+.-
T Consensus 80 tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 80 TGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred CCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 344567776664 34567777899999999999999875432 33 4899999864
No 366
>PLN03127 Elongation factor Tu; Provisional
Probab=90.48 E-value=1.2 Score=45.80 Aligned_cols=41 Identities=10% Similarity=0.065 Sum_probs=32.8
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
+.+++|...+.--...+++.+..+...|++..-+++|++.-
T Consensus 149 D~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDl 189 (447)
T PLN03127 149 DGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDV 189 (447)
T ss_pred CEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeecc
Confidence 47788888876556778899999999999865678999764
No 367
>PRK01184 hypothetical protein; Provisional
Probab=90.39 E-value=0.31 Score=43.44 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=21.0
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
.++++.|..|+||||+|. + +.+.|..+ +|+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~---~~~~g~~~--i~~ 31 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-I---AREMGIPV--VVM 31 (184)
T ss_pred cEEEEECCCCCCHHHHHH-H---HHHcCCcE--EEh
Confidence 366777999999999864 3 34557655 554
No 368
>PRK02496 adk adenylate kinase; Provisional
Probab=90.32 E-value=0.28 Score=43.71 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=19.2
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHH
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
++|+| .|.+|+||||+|..||..+
T Consensus 2 ~~i~i-~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 2 TRLIF-LGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred eEEEE-ECCCCCCHHHHHHHHHHHh
Confidence 34444 5889999999999998776
No 369
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=90.31 E-value=0.37 Score=42.75 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=26.2
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
+.++.|..|+|||+.|..++.. .|.+++.+++
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at 32 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIAT 32 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEc
Confidence 3567799999999999999865 6778888865
No 370
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=90.31 E-value=9.8 Score=36.43 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCc
Q 015096 288 QGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTV 324 (413)
Q Consensus 288 ~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~ 324 (413)
..++..+..+.+|..+..........|.+..|..|..
T Consensus 195 ~~~f~~~~~L~ERag~~~~~~~~GSIT~i~~V~~~~d 231 (274)
T cd01132 195 GDVFYLHSRLLERAAKLNDELGGGSLTALPIIETQAG 231 (274)
T ss_pred chHHHHhHHHHHHhhhccCCCCCcceEEEEEEEcCCC
Confidence 4555666677777665543334456788899998853
No 371
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=90.30 E-value=6.1 Score=35.16 Aligned_cols=86 Identities=10% Similarity=0.113 Sum_probs=51.5
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCCCCCchHHHHHHHHHHHHHHHHhHhcCCCCCCceEEecC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPL 393 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~~~~P~ 393 (413)
+.+++|+.+..-.-..+.+.+..+..+++| .-+++|++... ...+.....+.+...+........ ...|+ +|.
T Consensus 95 D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~---~~~~~~~~~~~~~~l~~~~~~~~~-~~~~v--i~~ 167 (188)
T PF00009_consen 95 DIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDLI---EKELEEIIEEIKEKLLKEYGENGE-EIVPV--IPI 167 (188)
T ss_dssp SEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTSS---HHHHHHHHHHHHHHHHHHTTSTTT-STEEE--EEE
T ss_pred ccceeeeecccccccccccccccccccccc-eEEeeeeccch---hhhHHHHHHHHHHHhccccccCcc-ccceE--EEE
Confidence 578999999877788899999999999999 67999997543 122222222223333333332100 12344 444
Q ss_pred CCCCCCCHHHHHH
Q 015096 394 VDVEIRGVPALRF 406 (413)
Q Consensus 394 ~~~e~~g~~~L~~ 406 (413)
-...=.|++.|.+
T Consensus 168 Sa~~g~gi~~Ll~ 180 (188)
T PF00009_consen 168 SALTGDGIDELLE 180 (188)
T ss_dssp BTTTTBTHHHHHH
T ss_pred ecCCCCCHHHHHH
Confidence 4555558776643
No 372
>PRK13975 thymidylate kinase; Provisional
Probab=90.30 E-value=0.29 Score=43.97 Aligned_cols=26 Identities=38% Similarity=0.534 Sum_probs=22.8
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHH
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFA 114 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA 114 (413)
..++++-|-.|+||||++..||..+-
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35778889999999999999999884
No 373
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=90.20 E-value=0.58 Score=45.94 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=35.2
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
+++++++ |---+||||++.-|--+..+.|++.+.+|.|+..
T Consensus 103 GPrv~vV-Gp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ 143 (415)
T KOG2749|consen 103 GPRVMVV-GPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQ 143 (415)
T ss_pred CCEEEEE-CCCccchHHHHHHHHHHHHHcCCcceEEEcCCCC
Confidence 4566666 5557999999999999999999999999999974
No 374
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=90.18 E-value=0.41 Score=46.95 Aligned_cols=44 Identities=27% Similarity=0.410 Sum_probs=35.5
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhcc
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQD 138 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~ 138 (413)
+++.|..|+||||++..+|..+ |.+..-|.++..-+..+++|..
T Consensus 67 ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~~~DliG~~ 110 (327)
T TIGR01650 67 VMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVSRIDLVGKD 110 (327)
T ss_pred EEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCChhhcCCCc
Confidence 4456999999999999999887 5788888888876677777753
No 375
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=90.14 E-value=0.3 Score=49.99 Aligned_cols=37 Identities=38% Similarity=0.550 Sum_probs=29.3
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
...+++++|-+|+||||+|..||..+. . +.+|.+|.-
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg---~-~~ii~tD~i 290 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLG---I-TRIVSTDAV 290 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC---C-cEEeehhHH
Confidence 367888899999999999999997763 3 337788863
No 376
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=90.10 E-value=0.3 Score=43.42 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=19.1
Q ss_pred EEEEeCCCcchhhHHHHHHHHHH
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
++++.|..|+||||++..||..+
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 55556779999999999999765
No 377
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=90.00 E-value=0.36 Score=48.28 Aligned_cols=52 Identities=15% Similarity=0.299 Sum_probs=40.7
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec------CC-CC-CcchHhhcccc
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST------DP-AH-SLSDSFAQDLT 140 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~------D~-~~-~l~~~lg~~~~ 140 (413)
....+++|.||+|||++--.+...+...|++|+++-. .. .+ ++|.+|+++..
T Consensus 22 ~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~ 81 (364)
T PF05970_consen 22 GLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPIN 81 (364)
T ss_pred CcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCcccc
Confidence 3567889999999999999999988877777776542 23 44 88889988753
No 378
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=89.99 E-value=0.32 Score=50.04 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=31.7
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHC--CCCEEEEecC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANN--GHPTLVVSTD 126 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~--G~rVLlvD~D 126 (413)
-+++.|..|+|||+++.++|..+.++ |.+|+.++++
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~ 187 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE 187 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 46777999999999999999999887 7889999875
No 379
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=89.93 E-value=1.3 Score=48.31 Aligned_cols=41 Identities=17% Similarity=0.062 Sum_probs=31.4
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
+.+++|.......-....+.+..++..++++. +++|++.-.
T Consensus 100 D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~ 140 (689)
T TIGR00484 100 DGAVAVLDAVGGVQPQSETVWRQANRYEVPRI-AFVNKMDKT 140 (689)
T ss_pred CEEEEEEeCCCCCChhHHHHHHHHHHcCCCEE-EEEECCCCC
Confidence 46788888766555567788888999999875 899998644
No 380
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=89.91 E-value=0.41 Score=43.45 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=23.5
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
++.+.|..|+||||++..|+..+ |..| +|+|-
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~---g~~~--i~~D~ 34 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQK---GIPI--LDADI 34 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh---CCeE--eeCcH
Confidence 45566899999999998877533 6544 58874
No 381
>PRK14531 adenylate kinase; Provisional
Probab=89.90 E-value=0.32 Score=43.51 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=19.4
Q ss_pred EEEEeCCCcchhhHHHHHHHHHH
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
.+++.|.+|+||||+|..||..+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 35556999999999999998875
No 382
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=89.84 E-value=11 Score=35.52 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=21.6
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANN 116 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~ 116 (413)
.+.++.|+ |-+|+||||++-.++..+...
T Consensus 15 ~Gqr~~I~-G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 15 KGQRGLIV-APPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHhccccc
Confidence 34556666 669999999998888777653
No 383
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=89.83 E-value=0.53 Score=45.19 Aligned_cols=48 Identities=23% Similarity=0.349 Sum_probs=37.2
Q ss_pred chhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 79 GFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 79 ~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.++..+.+ +..+|.=+-|-.|+||||+|..++......|.++..||+-
T Consensus 48 ~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE 97 (279)
T COG0468 48 ALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTE 97 (279)
T ss_pred hHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCC
Confidence 34444442 2345555558999999999999999999999999999983
No 384
>PRK03003 GTP-binding protein Der; Reviewed
Probab=89.78 E-value=2.6 Score=43.73 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=24.4
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
+.+++|..........-..+.+.++..+.|+. +|+|++.-
T Consensus 119 D~il~VvD~~~~~s~~~~~i~~~l~~~~~pii-lV~NK~Dl 158 (472)
T PRK03003 119 DAVLFVVDATVGATATDEAVARVLRRSGKPVI-LAANKVDD 158 (472)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECccC
Confidence 46777777654322233556667777776654 77888653
No 385
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=89.78 E-value=0.39 Score=42.93 Aligned_cols=30 Identities=40% Similarity=0.485 Sum_probs=21.9
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+++.|.+|+||||+|..||..+ | +..+++|
T Consensus 2 I~i~G~pGsGKst~a~~La~~~---~--~~~i~~~ 31 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY---G--LPHISTG 31 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc---C--CeEEECc
Confidence 3555889999999999998764 3 3455553
No 386
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=89.72 E-value=0.4 Score=46.64 Aligned_cols=36 Identities=31% Similarity=0.476 Sum_probs=29.5
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHC--CCCEEEEe
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANN--GHPTLVVS 124 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~--G~rVLlvD 124 (413)
+.-++++|..|+||||+..+|...+... +.|++.|+
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiE 169 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIE 169 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEEC
Confidence 3455688999999999999999888764 67888877
No 387
>PRK14527 adenylate kinase; Provisional
Probab=89.56 E-value=0.35 Score=43.51 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=20.0
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
.++++.|.+|+||||+|..||..+
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 456666899999999999998766
No 388
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=89.55 E-value=0.3 Score=42.16 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=17.1
Q ss_pred EEEEEeCCCcchhhHHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAV 111 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~ 111 (413)
-|+|+ |-+|+||||++..+|-
T Consensus 9 NILvt-GTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 9 NILVT-GTPGTGKSTLAERLAE 29 (176)
T ss_pred CEEEe-CCCCCCchhHHHHHHH
Confidence 35554 8999999999999984
No 389
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=89.53 E-value=0.66 Score=42.59 Aligned_cols=35 Identities=23% Similarity=0.424 Sum_probs=31.2
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
.++++-|--|+||||.+..|+..|.++|.+|++.-
T Consensus 4 ~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~tr 38 (208)
T COG0125 4 MFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTR 38 (208)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 57777899999999999999999999999887765
No 390
>PRK12739 elongation factor G; Reviewed
Probab=89.52 E-value=1.9 Score=46.96 Aligned_cols=41 Identities=20% Similarity=0.068 Sum_probs=32.9
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
+.+++|.....---...++++..+...|++.. +++|++.-.
T Consensus 98 D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~i-v~iNK~D~~ 138 (691)
T PRK12739 98 DGAVAVFDAVSGVEPQSETVWRQADKYGVPRI-VFVNKMDRI 138 (691)
T ss_pred CeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCC
Confidence 47888888766556677889999999999986 899998654
No 391
>PRK08356 hypothetical protein; Provisional
Probab=89.50 E-value=0.5 Score=42.71 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=21.0
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHP 119 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~r 119 (413)
.+++++|+.|+||||+|-.|+ +.|..
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~----~~g~~ 31 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE----EKGFC 31 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH----HCCCc
Confidence 467788999999999998884 35765
No 392
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=89.49 E-value=3.4 Score=42.06 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=29.4
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
+.+++|..+...-......+.+.+++.+.++. +|+|++.-
T Consensus 80 d~vl~vvD~~~~~~~~d~~i~~~l~~~~~pii-lVvNK~D~ 119 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDEEIAKWLRKSGKPVI-LVANKIDG 119 (429)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEE-EEEECccC
Confidence 47888888765444555677888888888764 78999763
No 393
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=89.40 E-value=0.26 Score=45.63 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=22.8
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
=+++.|.+|+||||+|.-+|..+ |.+...+++
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~---~~~~~~~sg 83 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANEL---GVNFKITSG 83 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHC---T--EEEEEC
T ss_pred eEEEECCCccchhHHHHHHHhcc---CCCeEeccc
Confidence 35677999999999998888766 444444554
No 394
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=89.39 E-value=0.69 Score=46.49 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=31.2
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCC--CCEEEEecCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNG--HPTLVVSTDPA 128 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G--~rVLlvD~D~~ 128 (413)
..+++.|.+|+|||+++..++..+.+.+ ..++-|++...
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 3467889999999999999999998765 56777776543
No 395
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=89.37 E-value=0.38 Score=42.86 Aligned_cols=30 Identities=37% Similarity=0.450 Sum_probs=23.2
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+.+.|..|+||||++.-|+. .|.. ++|+|-
T Consensus 2 i~itG~~gsGKst~~~~l~~----~g~~--~i~~D~ 31 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE----LGIP--VIDADK 31 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH----CCCC--EEecCH
Confidence 45679999999999988876 4654 577774
No 396
>PRK10536 hypothetical protein; Provisional
Probab=89.36 E-value=0.77 Score=43.51 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=32.6
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHH-HCCCCEEEEecCCCCCcchHhhcc
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTDPAHSLSDSFAQD 138 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA-~~G~rVLlvD~D~~~~l~~~lg~~ 138 (413)
-++++.|..|+|||++|.++|..+- ...++.++| +.|.-.....+|.-
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI-~RP~v~~ge~LGfL 123 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV-TRPVLQADEDLGFL 123 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE-eCCCCCchhhhCcC
Confidence 3888889999999999999999654 434555555 34443445555543
No 397
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=89.34 E-value=0.6 Score=45.03 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=34.3
Q ss_pred hhcCCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 83 MVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 83 ~~~~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+...+-.++-+.|..|+||||+...+...|... +++.+|..|..
T Consensus 98 ~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~ 142 (290)
T PRK10463 98 RFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQ 142 (290)
T ss_pred HHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcC
Confidence 3333444555566889999999999999988654 58999998875
No 398
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=89.26 E-value=0.39 Score=47.65 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=25.2
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHH
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFAN 115 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~ 115 (413)
.+.|+.+.|.+|+||||+|..||..|..
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4678888899999999999999999976
No 399
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=89.24 E-value=0.4 Score=49.28 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=30.3
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHC--CCCEEEEecC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANN--GHPTLVVSTD 126 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~--G~rVLlvD~D 126 (413)
+++.|..|+|||+++.++|..+.+. +.+|+.++++
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~ 169 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 6677899999999999999998875 6799999874
No 400
>PLN02165 adenylate isopentenyltransferase
Probab=89.23 E-value=0.35 Score=47.53 Aligned_cols=36 Identities=25% Similarity=0.486 Sum_probs=26.7
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
....++++.|-.|+||||+|..||..+. .-+|++|-
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~-----~eIIsaDs 76 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFP-----SEIINSDK 76 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcC-----CceecCCh
Confidence 3344666779999999999999987762 24677773
No 401
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=89.21 E-value=1.6 Score=45.94 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=31.1
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
+.+++|..+..---..++++++.++..++|+ -+++|++.-
T Consensus 104 D~aIlVvDa~~gv~~~t~~l~~~~~~~~iPi-iv~iNK~D~ 143 (526)
T PRK00741 104 DSALMVIDAAKGVEPQTRKLMEVCRLRDTPI-FTFINKLDR 143 (526)
T ss_pred CEEEEEEecCCCCCHHHHHHHHHHHhcCCCE-EEEEECCcc
Confidence 4788888876544556788899999999986 489999754
No 402
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=89.16 E-value=0.36 Score=42.11 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=15.2
Q ss_pred EEeCCCcchhhHHHHHHHHH
Q 015096 93 MLGGKGGVGKTSCAASLAVK 112 (413)
Q Consensus 93 v~sgKGGvGKTTvAa~LA~~ 112 (413)
+++|-.|+||||++..|+..
T Consensus 3 ~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 3 VITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEE--TTSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHc
Confidence 44577899999999999966
No 403
>PRK13764 ATPase; Provisional
Probab=89.12 E-value=0.47 Score=50.41 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=29.4
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
..++++|..|+||||++.+|+..+...|+.|.-++
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiE 292 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTME 292 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEEC
Confidence 34677899999999999999999988887766665
No 404
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=89.08 E-value=0.34 Score=42.88 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=21.3
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHH
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFAN 115 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~ 115 (413)
++++.|..|+||||++-.|+..+..
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 5677899999999999999887643
No 405
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=89.03 E-value=0.62 Score=41.39 Aligned_cols=34 Identities=35% Similarity=0.506 Sum_probs=25.5
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
|.|+.|. |=||||-|..+|+..+-+|.||+++=.
T Consensus 6 i~vytG~-GKGKTTAAlGlalRA~G~G~rV~ivQF 39 (172)
T PF02572_consen 6 IQVYTGD-GKGKTTAALGLALRAAGHGMRVLIVQF 39 (172)
T ss_dssp EEEEESS-SS-HHHHHHHHHHHHHCTT--EEEEES
T ss_pred EEEEeCC-CCCchHHHHHHHHHHHhCCCEEEEEEE
Confidence 4445444 569999999999999999999999986
No 406
>PRK14528 adenylate kinase; Provisional
Probab=89.01 E-value=0.49 Score=42.51 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=18.2
Q ss_pred EEEeCCCcchhhHHHHHHHHHH
Q 015096 92 YMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~l 113 (413)
+++.|.+|+||||+|..||..+
T Consensus 4 i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 4 IIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4456889999999999988765
No 407
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=88.89 E-value=0.46 Score=42.11 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=24.4
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++.|-.|+||||++..||..+ | .-++|+|-
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l---~--~~~vd~D~ 37 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQL---N--MEFYDSDQ 37 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHc---C--CcEEECCc
Confidence 35555999999999999999876 3 34677774
No 408
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=88.88 E-value=0.39 Score=47.92 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=25.8
Q ss_pred chhhhhcCCCcEEEEEeCCCcchhhHHHHHHHHH
Q 015096 79 GFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVK 112 (413)
Q Consensus 79 ~~~~~~~~~~~~i~v~sgKGGvGKTTvAa~LA~~ 112 (413)
.++.+++...-.=.|+-|.+|+||||+|.-+|..
T Consensus 38 ~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 38 PLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred hHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHh
Confidence 4555666555555677899999999999999853
No 409
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=88.85 E-value=0.45 Score=45.37 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=30.1
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
.+-+++++|..|+||||+..++...+...+.+++.|+
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiE 115 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVE 115 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEEC
Confidence 3557888899999999999988877776667777776
No 410
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=88.83 E-value=0.36 Score=43.60 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=21.4
Q ss_pred EEEEeCCCcchhhHHHHHH-HHHHHHCCCCEEEEecC
Q 015096 91 YYMLGGKGGVGKTSCAASL-AVKFANNGHPTLVVSTD 126 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~L-A~~lA~~G~rVLlvD~D 126 (413)
|.++.|+.|.|||+.|+.. ....-++|++|.. ..+
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~ 37 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIP 37 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE---T
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccC
Confidence 6677899999999999998 6665567777665 544
No 411
>PLN03025 replication factor C subunit; Provisional
Probab=88.81 E-value=0.6 Score=45.71 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=26.1
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+++.|..|+||||+|..+|..+-..+++..+++.+
T Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln 71 (319)
T PLN03025 37 LILSGPPGTGKTTSILALAHELLGPNYKEAVLELN 71 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccCccceeeec
Confidence 45689999999999999999986555443444443
No 412
>PRK13695 putative NTPase; Provisional
Probab=88.75 E-value=0.67 Score=40.95 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=23.8
Q ss_pred EEeCCCcchhhHHHHHHHHHHHHCCCCEE
Q 015096 93 MLGGKGGVGKTSCAASLAVKFANNGHPTL 121 (413)
Q Consensus 93 v~sgKGGvGKTTvAa~LA~~lA~~G~rVL 121 (413)
++.|.+|+||||++..++..+...|.++.
T Consensus 4 ~ltG~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 4 GITGPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 34488999999999999988877787754
No 413
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=88.75 E-value=1.8 Score=52.57 Aligned_cols=47 Identities=17% Similarity=0.348 Sum_probs=36.6
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhh
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFA 136 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg 136 (413)
...+.+++|-+|+||||+...+...+...|++|.++- |.+..+..|.
T Consensus 445 ~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lA--PTgrAA~~L~ 491 (1960)
T TIGR02760 445 TKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIIT--AGSLSAQELR 491 (1960)
T ss_pred CCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEe--CCHHHHHHHH
Confidence 3468888899999999999999998888999999886 4333444443
No 414
>PRK04182 cytidylate kinase; Provisional
Probab=88.67 E-value=0.37 Score=42.41 Aligned_cols=30 Identities=40% Similarity=0.475 Sum_probs=23.2
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
+++++|-.|+||||+|..||..+ |.. ++|+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l---g~~--~id~ 31 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL---GLK--HVSA 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCc--EecH
Confidence 46667999999999999998776 443 4564
No 415
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=88.65 E-value=0.51 Score=42.71 Aligned_cols=32 Identities=31% Similarity=0.323 Sum_probs=24.4
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.++.+.|.-|+||||++..|+. .|. -++|+|-
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~----~g~--~~i~~D~ 34 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE----LGA--PVIDADA 34 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----cCC--EEEEecH
Confidence 4566668899999999988775 354 5788884
No 416
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=88.63 E-value=0.48 Score=43.01 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=26.3
Q ss_pred EEeCCCcchhhHHHHHHHHHHHHC--CCCEEEEecCCCC-CcchH
Q 015096 93 MLGGKGGVGKTSCAASLAVKFANN--GHPTLVVSTDPAH-SLSDS 134 (413)
Q Consensus 93 v~sgKGGvGKTTvAa~LA~~lA~~--G~rVLlvD~D~~~-~l~~~ 134 (413)
++.|..|.|||++..+++..++.. ...+-+.=.|+.+ .+..+
T Consensus 42 li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k~~~l~~~ 86 (205)
T PF01580_consen 42 LIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPKGSDLAPL 86 (205)
T ss_dssp EEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSCCGGG
T ss_pred EEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCCccccchh
Confidence 344899999999999999999982 3344444444443 44443
No 417
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=88.59 E-value=0.79 Score=48.94 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=33.3
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
++++.|+ |..|+||||+...|...|.++|+||.+|--|-
T Consensus 10 ~~vi~iv-G~s~sGKTTlie~li~~L~~~G~rVavIKh~~ 48 (597)
T PRK14491 10 IPLLGFC-AYSGTGKTTLLEQLIPELNQRGLRLAVIKHAH 48 (597)
T ss_pred ccEEEEE-cCCCCCHHHHHHHHHHHHHhCCceEEEEEcCC
Confidence 4555655 67899999999999999999999999998743
No 418
>PRK13976 thymidylate kinase; Provisional
Probab=88.56 E-value=0.64 Score=42.71 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=27.9
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHC-C-CCEEEE
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANN-G-HPTLVV 123 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~-G-~rVLlv 123 (413)
++++-|--|+||||.+..|+..|... | .+|.+.
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~ 36 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT 36 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe
Confidence 57788999999999999999999986 6 466544
No 419
>PRK14532 adenylate kinase; Provisional
Probab=88.52 E-value=0.35 Score=43.24 Aligned_cols=30 Identities=30% Similarity=0.324 Sum_probs=22.2
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+++.|.+|+||||+|..||..+ | ...||+|
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~---g--~~~is~~ 32 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER---G--MVQLSTG 32 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc---C--CeEEeCc
Confidence 4456999999999999998644 4 3456653
No 420
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=88.32 E-value=0.41 Score=42.90 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=20.6
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHH
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
-.++|+||..||||||+...|=...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4688999999999999998775443
No 421
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=88.22 E-value=0.64 Score=45.49 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=26.9
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCC--CCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNG--HPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G--~rVLlvD~ 125 (413)
.+++.|..|+||||+|..+|..+...+ .+++.+++
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 356789999999999999999886543 34566654
No 422
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=88.18 E-value=0.63 Score=42.57 Aligned_cols=34 Identities=24% Similarity=0.201 Sum_probs=24.7
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.++...|.-|+||||++..|+..+ |.+ ++|+|.-
T Consensus 7 ~~IglTG~iGsGKStv~~~l~~~l---g~~--vidaD~i 40 (204)
T PRK14733 7 YPIGITGGIASGKSTATRILKEKL---NLN--VVCADTI 40 (204)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHc---CCe--EEeccHH
Confidence 455556888999999998887533 665 5888853
No 423
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=88.08 E-value=0.46 Score=46.41 Aligned_cols=40 Identities=28% Similarity=0.178 Sum_probs=34.0
Q ss_pred cEEEEEeC-CCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 89 RKYYMLGG-KGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 89 ~~i~v~sg-KGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+|+|-+- -||.|||-+...||..|.++|.++.+++=.=.
T Consensus 48 PVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYg 88 (336)
T COG1663 48 PVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYG 88 (336)
T ss_pred CEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcC
Confidence 56776554 59999999999999999999999999996543
No 424
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=87.98 E-value=0.61 Score=51.15 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=31.0
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
.+.++.|.+|+||||+...+...+...|++|.++-
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~A 403 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAA 403 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 47888899999999999999888888899999883
No 425
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=87.97 E-value=0.49 Score=42.33 Aligned_cols=17 Identities=47% Similarity=0.636 Sum_probs=15.8
Q ss_pred CCCcchhhHHHHHHHHH
Q 015096 96 GKGGVGKTSCAASLAVK 112 (413)
Q Consensus 96 gKGGvGKTTvAa~LA~~ 112 (413)
|-+|+||||.|..||..
T Consensus 7 G~pGaGK~T~A~~La~~ 23 (178)
T COG0563 7 GPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 89999999999999876
No 426
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=87.52 E-value=0.26 Score=41.50 Aligned_cols=43 Identities=30% Similarity=0.287 Sum_probs=22.7
Q ss_pred EEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhcc
Q 015096 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQD 138 (413)
Q Consensus 93 v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~ 138 (413)
+.-|-+|+||||++.++|..+...-+|| -.-+.-.-++++|..
T Consensus 3 Lleg~PG~GKT~la~~lA~~~~~~f~RI---q~tpdllPsDi~G~~ 45 (131)
T PF07726_consen 3 LLEGVPGVGKTTLAKALARSLGLSFKRI---QFTPDLLPSDILGFP 45 (131)
T ss_dssp EEES---HHHHHHHHHHHHHTT--EEEE---E--TT--HHHHHEEE
T ss_pred eeECCCccHHHHHHHHHHHHcCCceeEE---EecCCCCcccceeee
Confidence 4558899999999999998875433332 222222345666654
No 427
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=87.47 E-value=0.93 Score=45.43 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=30.2
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.+|.|+ |..|+||||++..|...|..+ ++|.++..+
T Consensus 6 ~~i~i~-G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~ 41 (369)
T PRK14490 6 FEIAFC-GYSGSGKTTLITALVRRLSER-FSVGYYKHG 41 (369)
T ss_pred EEEEEE-eCCCCCHHHHHHHHHHHHhhC-ceEEEEEeC
Confidence 345554 778999999999999999999 999999753
No 428
>PRK10865 protein disaggregation chaperone; Provisional
Probab=87.40 E-value=0.63 Score=51.89 Aligned_cols=41 Identities=29% Similarity=0.428 Sum_probs=32.3
Q ss_pred CCCcEEEEEeCCCcchhhHHHHHHHHHHHH-------CCCCEEEEecC
Q 015096 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFAN-------NGHPTLVVSTD 126 (413)
Q Consensus 86 ~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~-------~G~rVLlvD~D 126 (413)
+..+--.++-|.+|||||+++..||..+.+ +|++++.+|+.
T Consensus 196 r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~ 243 (857)
T PRK10865 196 RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG 243 (857)
T ss_pred cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehh
Confidence 334445556699999999999999999875 47888888765
No 429
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=87.39 E-value=0.86 Score=42.04 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=29.3
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCC--EEEEe
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHP--TLVVS 124 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~r--VLlvD 124 (413)
++|++|-+-+||||-|..|..+|.++|.| |.++|
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 67888999999999999999999999955 55554
No 430
>CHL00071 tufA elongation factor Tu
Probab=87.37 E-value=5.7 Score=40.35 Aligned_cols=41 Identities=12% Similarity=0.053 Sum_probs=32.9
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
+.+++|..+..-....+++.+..+...|++..-+++|++.-
T Consensus 100 D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~ 140 (409)
T CHL00071 100 DGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQ 140 (409)
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCC
Confidence 47888888876666788888999999998855578999764
No 431
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=87.25 E-value=1.1 Score=39.92 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=30.9
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+.+++|==|+||||+--+|.. ....|.|+.+|-.|..
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g 38 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFG 38 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTT
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEcccc
Confidence 567788889999999999988 6678999999998865
No 432
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=87.22 E-value=0.58 Score=45.67 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=25.9
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
...+++.|..|+||||++..||..| |.+++ |+|
T Consensus 133 ~~~I~l~G~~GsGKStvg~~La~~L---g~~~i--d~D 165 (309)
T PRK08154 133 RRRIALIGLRGAGKSTLGRMLAARL---GVPFV--ELN 165 (309)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHc---CCCEE--eHH
Confidence 4456666999999999999998876 66655 766
No 433
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=87.21 E-value=50 Score=36.39 Aligned_cols=51 Identities=25% Similarity=0.249 Sum_probs=39.2
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEE--EEecCCCC-CcchHhhcc
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTL--VVSTDPAH-SLSDSFAQD 138 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVL--lvD~D~~~-~l~~~lg~~ 138 (413)
++-=++++.-+|||||.--.+=|..+-+.|..|+ +|++--+. +.+..=|++
T Consensus 21 GklkIf~G~apGVGKTyaML~~a~~~~~~G~DvviG~vEtHgR~ET~al~eGl~ 74 (890)
T COG2205 21 GKLKIFLGAAPGVGKTYAMLSEAQRLLAEGVDVVIGVVETHGRRETAALLEGLE 74 (890)
T ss_pred CceEEEeecCCCccHHHHHHHHHHHHHHcCCcEEEEEecCCCchHHHHHHcCCc
Confidence 4556777889999999999999999999998765 67776665 555555554
No 434
>PRK14530 adenylate kinase; Provisional
Probab=87.17 E-value=0.57 Score=43.01 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=19.0
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
+|+| -|.+|+||||+|..||..+
T Consensus 5 ~I~i-~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILL-LGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEE-ECCCCCCHHHHHHHHHHHh
Confidence 4444 5899999999999998876
No 435
>PLN02422 dephospho-CoA kinase
Probab=87.14 E-value=0.75 Score=42.97 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=24.0
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
++.+.|.-|+||||++.-|+ +.|.. ++|+|-
T Consensus 3 ~igltG~igsGKstv~~~l~----~~g~~--~idaD~ 33 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK----SSGIP--VVDADK 33 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH----HCCCe--EEehhH
Confidence 56666899999999998887 34664 588883
No 436
>PRK12736 elongation factor Tu; Reviewed
Probab=87.07 E-value=3.7 Score=41.46 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=32.1
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
+.+++|.....-....+++.+..+...|++..-+++|++.-
T Consensus 100 d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~ 140 (394)
T PRK12736 100 DGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDL 140 (394)
T ss_pred CEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCC
Confidence 47788888776556777888888999998866688999754
No 437
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=87.00 E-value=0.59 Score=48.56 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=34.6
Q ss_pred CCcEEEEEe---CCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC-CCcchHhhccc
Q 015096 87 TQRKYYMLG---GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQDL 139 (413)
Q Consensus 87 ~~~~i~v~s---gKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~-~~l~~~lg~~~ 139 (413)
.+|-|+|++ ..-|+||||++..|+.+|.+.|+++.+. +| +|+.-.||.+.
T Consensus 53 ~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~~~---lRePSlGP~fG~KG 106 (557)
T PF01268_consen 53 DGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAIAA---LREPSLGPVFGIKG 106 (557)
T ss_dssp --EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EEEE---E----CHHHHCST-
T ss_pred CCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceEEE---EecCCCCCccCccc
Confidence 456666665 4679999999999999999999998876 44 59999999874
No 438
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=87.00 E-value=0.5 Score=44.65 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=21.6
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHH
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFA 114 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA 114 (413)
..++++.|..|+||||++..++..+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 34667789999999999999977665
No 439
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=86.99 E-value=0.82 Score=33.34 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=20.1
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHH
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFA 114 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA 114 (413)
+.+++|+.|+||||+--++-..|-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 677789999999999887777664
No 440
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=86.96 E-value=0.57 Score=42.79 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.7
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFA 114 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA 114 (413)
.+++++|-=|+||||+|-.||.++-
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred cEEEEecccccCHHHHHHHHHHHhC
Confidence 4677889999999999999998874
No 441
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=86.94 E-value=0.51 Score=41.74 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=19.0
Q ss_pred EEEEeCCCcchhhHHHHHHHHHH
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
++++.|..|+||||++..|+..+
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 56667999999999988888754
No 442
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=86.92 E-value=0.51 Score=43.17 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=17.2
Q ss_pred EEeCCCcchhhHHHHHHHHHH
Q 015096 93 MLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 93 v~sgKGGvGKTTvAa~LA~~l 113 (413)
++.|.+|+||||+|..||..+
T Consensus 3 ~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 3 VLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEECCCCCCHHHHHHHHHHHc
Confidence 445889999999999988654
No 443
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=86.79 E-value=0.57 Score=40.85 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=24.1
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+++++|-.|+||||+|..||..+ |.+ ++|.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l---g~~--~~~~~ 32 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL---SLK--LISAG 32 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCc--eecHH
Confidence 56778999999999999998765 444 56653
No 444
>PRK00279 adk adenylate kinase; Reviewed
Probab=86.79 E-value=0.56 Score=43.04 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=17.7
Q ss_pred EEEeCCCcchhhHHHHHHHHHH
Q 015096 92 YMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~l 113 (413)
+++.|.+|+||||+|..||..+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3445889999999999888665
No 445
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=86.76 E-value=18 Score=37.72 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCC
Q 015096 287 RQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPT 323 (413)
Q Consensus 287 ~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~ 323 (413)
+.+++..+.++.+|..++.........|.+..|.++.
T Consensus 287 Pg~vF~~~srLlERag~~~~~~~~GSITal~~V~~~~ 323 (497)
T TIGR03324 287 PGDIFYVHSRLLERSTHLNEELGGGSLTALPIIETEA 323 (497)
T ss_pred CccHHHHhHHHHHhhhhccCCCCCcceeEEEEEEcCC
Confidence 4566677777777776654444455678999999885
No 446
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=86.75 E-value=1.2 Score=42.80 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=27.6
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCC----CCEEEEecC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNG----HPTLVVSTD 126 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G----~rVLlvD~D 126 (413)
.-+.|.+| .|+||||+.+.-...+...+ .++|++...
T Consensus 14 ~~~lV~a~-AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft 54 (315)
T PF00580_consen 14 GPLLVNAG-AGSGKTTTLLERIAYLLYEGGVPPERILVLTFT 54 (315)
T ss_dssp SEEEEEE--TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESS
T ss_pred CCEEEEeC-CCCCchHHHHHHHHHhhccccCChHHheecccC
Confidence 34555545 99999999998888877665 589998853
No 447
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=86.61 E-value=0.9 Score=44.01 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=28.0
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+++.|..|+||||++..++..+...+.+...++.+
T Consensus 41 ~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~ 75 (319)
T PRK00440 41 LLFAGPPGTGKTTAALALARELYGEDWRENFLELN 75 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCccccceEEec
Confidence 47789999999999999999987666555555554
No 448
>PRK12735 elongation factor Tu; Reviewed
Probab=86.61 E-value=8.3 Score=39.00 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=31.3
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
+.+++|..........+.+.+..+...|++..-+++|++.-
T Consensus 100 D~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl 140 (396)
T PRK12735 100 DGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCC
Confidence 46788888776556677788888888998876567999754
No 449
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=86.51 E-value=0.35 Score=44.89 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=26.4
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
=+++||.+|+||||....||..|--..+|=.+++.
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 45667999999999999999988744455445444
No 450
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=86.46 E-value=0.48 Score=45.42 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=25.4
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+.+.|-.|+||||++..|+..+...| +.++.+|-
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~~~~--~~vi~~Dd 35 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFGSDL--VTVICLDD 35 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCc--eEEEECcc
Confidence 34559999999999999998875444 45666663
No 451
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=86.43 E-value=0.84 Score=42.19 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=28.8
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHH--CCCCEEEEecC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFAN--NGHPTLVVSTD 126 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~--~G~rVLlvD~D 126 (413)
+++.|..|+|||.+-.+++..+.+ .+.+|+.++++
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~ 73 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE 73 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH
Confidence 466789999999999999998876 47899999873
No 452
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=86.39 E-value=0.63 Score=40.03 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=16.4
Q ss_pred CcEEEEEeCCCcchhhHHHHHHH
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLA 110 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA 110 (413)
||+|.++ |..|+||||++..|-
T Consensus 1 Mkrimli-G~~g~GKTTL~q~L~ 22 (143)
T PF10662_consen 1 MKRIMLI-GPSGSGKTTLAQALN 22 (143)
T ss_pred CceEEEE-CCCCCCHHHHHHHHc
Confidence 3455555 899999999987664
No 453
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=86.37 E-value=1.3 Score=41.01 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=32.5
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
..+.++++-|-++-|||++|..|+..|.-.|.++-++...
T Consensus 10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g 49 (222)
T PF01591_consen 10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVG 49 (222)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecc
Confidence 4578888999999999999999999999999999998853
No 454
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=86.30 E-value=16 Score=38.15 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCC
Q 015096 287 RQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPT 323 (413)
Q Consensus 287 ~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~ 323 (413)
..+++..+..+.+|..++.........|.+.+|.+|.
T Consensus 287 P~~vf~~~s~LlERag~~~~~~~~GSITal~~V~~~~ 323 (502)
T PRK09281 287 PGDVFYLHSRLLERAAKLSDELGGGSLTALPIIETQA 323 (502)
T ss_pred CccHHHHhHHHHHHhhhccCCCCCccEEEEEEEECCC
Confidence 3456666777777776654433455678999999985
No 455
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=86.29 E-value=0.67 Score=41.53 Aligned_cols=31 Identities=39% Similarity=0.516 Sum_probs=22.8
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+.+.|.-|+||||++..|+... |.+ ++|+|-
T Consensus 2 i~itG~~gsGKst~~~~l~~~~---~~~--~i~~D~ 32 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKY---HFP--VIDADK 32 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhc---CCe--EEeCCH
Confidence 5667999999999998776532 244 578874
No 456
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=86.28 E-value=0.55 Score=44.56 Aligned_cols=53 Identities=25% Similarity=0.372 Sum_probs=37.5
Q ss_pred cCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHH------CCCCEEEEecCCC
Q 015096 76 AVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFAN------NGHPTLVVSTDPA 128 (413)
Q Consensus 76 ~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~------~G~rVLlvD~D~~ 128 (413)
+...++..+.+ ....|.=+.|.+|+|||.++..||..... .+.+|+.||++-.
T Consensus 23 g~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~ 83 (256)
T PF08423_consen 23 GCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGT 83 (256)
T ss_dssp SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSS
T ss_pred CCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCC
Confidence 44566777654 22345555589999999999999987642 2568999999753
No 457
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.24 E-value=0.96 Score=48.45 Aligned_cols=38 Identities=26% Similarity=0.425 Sum_probs=32.0
Q ss_pred CCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 86 ~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
++.++|+..+|-+|-||||+|--+|. +.|++|+=|.+-
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAk---qaGYsVvEINAS 360 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAK---QAGYSVVEINAS 360 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHH---hcCceEEEeccc
Confidence 46789999999999999999877665 459999988864
No 458
>PRK07429 phosphoribulokinase; Provisional
Probab=86.16 E-value=0.84 Score=44.95 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=28.2
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+.|+-+.|..|+||||++..|+..+-.. .+.++..|--
T Consensus 8 ~~IIgI~G~SGSGKSTla~~L~~ll~~~--~~~vi~~Dd~ 45 (327)
T PRK07429 8 PVLLGVAGDSGCGKTTFLRGLADLLGEE--LVTVICTDDY 45 (327)
T ss_pred CEEEEEECCCCCCHHHHHHHHHhHhccC--ceEEEEeccc
Confidence 4667777999999999999999777543 3556666643
No 459
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=86.16 E-value=1.1 Score=43.29 Aligned_cols=32 Identities=31% Similarity=0.390 Sum_probs=24.2
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+++.|..|+|||++|..+|..+ +.++..++..
T Consensus 33 ~ll~Gp~G~GKT~la~~ia~~~---~~~~~~~~~~ 64 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANEM---GVNLKITSGP 64 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCEEEeccc
Confidence 5667999999999999998766 3455555544
No 460
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=86.13 E-value=1 Score=41.04 Aligned_cols=30 Identities=37% Similarity=0.491 Sum_probs=23.3
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
++.+.|.-|+||||++.-|+. .|. .++|+|
T Consensus 3 ~igitG~igsGKst~~~~l~~----~g~--~vid~D 32 (200)
T PRK14734 3 RIGLTGGIGSGKSTVADLLSS----EGF--LIVDAD 32 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH----CCC--eEEeCc
Confidence 455568889999999998873 465 468888
No 461
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=86.12 E-value=0.87 Score=50.48 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=37.0
Q ss_pred EEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC-CCcchHhh
Q 015096 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFA 136 (413)
Q Consensus 93 v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~-~~l~~~lg 136 (413)
++.|+.|.||||+...+...+...|.+|.++|.+-. ..+..+++
T Consensus 442 ~I~G~sGsGKS~l~~~l~~~~~~~g~~vviiD~g~sy~~l~~~l~ 486 (829)
T TIGR03783 442 FILGPSGSGKSFFTNHLVRQYYEQGTHILLVDTGNSYQGLCELIH 486 (829)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCEEEEECCCccHHHHHHHhh
Confidence 455999999999999999999999999999998754 36666664
No 462
>PRK04195 replication factor C large subunit; Provisional
Probab=86.07 E-value=0.98 Score=46.95 Aligned_cols=35 Identities=37% Similarity=0.538 Sum_probs=28.3
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
...++++|..|+||||+|..+|..+ |..++-+++.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el---~~~~ielnas 73 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY---GWEVIELNAS 73 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEccc
Confidence 4567778999999999999998766 6777777653
No 463
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=85.93 E-value=20 Score=37.14 Aligned_cols=37 Identities=22% Similarity=0.164 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCC
Q 015096 287 RQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPT 323 (413)
Q Consensus 287 ~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~ 323 (413)
+.+++..+..+.+|..+..........|.+.+|.++.
T Consensus 266 P~~vF~~~srLlERag~~~~~~~~GSITal~~V~~~~ 302 (485)
T CHL00059 266 PGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQA 302 (485)
T ss_pred CchHHHHhHHHHHhhhcccCCCCCcceEEEEEEEccC
Confidence 3456666777777776554333455678899998884
No 464
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=85.92 E-value=3.5 Score=41.69 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=31.4
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
+.+++|.....-....+.+.+..+...|++..-+++|++.-
T Consensus 100 D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl 140 (394)
T TIGR00485 100 DGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (394)
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEeccc
Confidence 46788888776556777888888888898866567999753
No 465
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=85.73 E-value=0.99 Score=43.05 Aligned_cols=32 Identities=38% Similarity=0.264 Sum_probs=28.2
Q ss_pred CCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 96 gKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
=+-|+|||.+++-+|...|..|+.|-+|..+.
T Consensus 97 m~TGEGKTli~~l~a~~~AL~G~~V~vvT~Nd 128 (266)
T PF07517_consen 97 MKTGEGKTLIAALPAALNALQGKGVHVVTSND 128 (266)
T ss_dssp ESTTSHHHHHHHHHHHHHHTTSS-EEEEESSH
T ss_pred ecCCCCcHHHHHHHHHHHHHhcCCcEEEeccH
Confidence 47899999999999999999999999999864
No 466
>COG0645 Predicted kinase [General function prediction only]
Probab=85.66 E-value=0.7 Score=40.70 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.0
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFA 114 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA 114 (413)
.+.+++|-.|+||||+|..|+..+.
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lg 26 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLG 26 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcC
Confidence 5778889999999999999998774
No 467
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=85.58 E-value=0.69 Score=41.39 Aligned_cols=24 Identities=38% Similarity=0.383 Sum_probs=19.7
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
.++++.|..|+||||+...|+..+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 467778999999999999986543
No 468
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=85.55 E-value=1.3 Score=43.58 Aligned_cols=33 Identities=30% Similarity=0.356 Sum_probs=24.8
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
-+++.|..|+||||+|..+|..+ |.++..++..
T Consensus 53 ~~ll~GppG~GKT~la~~ia~~l---~~~~~~~~~~ 85 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANEM---GVNIRITSGP 85 (328)
T ss_pred cEEEECCCCccHHHHHHHHHHHh---CCCeEEEecc
Confidence 45667999999999999998876 4455555543
No 469
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=85.55 E-value=0.73 Score=40.45 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=23.2
Q ss_pred CCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 96 gKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
|-.|+||||++..||..+ | ...+|.|.-
T Consensus 2 G~sGsGKSTla~~la~~l---~--~~~~~~d~~ 29 (163)
T PRK11545 2 GVSGSGKSAVASEVAHQL---H--AAFLDGDFL 29 (163)
T ss_pred CCCCCcHHHHHHHHHHHh---C--CeEEeCccC
Confidence 778999999999999888 3 367788864
No 470
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=85.52 E-value=1.1 Score=39.05 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=27.6
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCC--CCEEEEec
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNG--HPTLVVST 125 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G--~rVLlvD~ 125 (413)
...++.+..|+|||++.+..+......+ .+++++-.
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 4566778999999998888888877665 67777653
No 471
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=85.49 E-value=0.92 Score=48.21 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=31.4
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHH--CCCCEEEEecC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFAN--NGHPTLVVSTD 126 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~--~G~rVLlvD~D 126 (413)
-+++.|..|+|||.++.+++..+.+ .|++|+.++++
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitae 353 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSE 353 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 3677799999999999999999876 48999999984
No 472
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=85.48 E-value=0.89 Score=40.29 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=23.4
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
++++.|..|+||||+|..++..+ |.+++.+.+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat 34 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS---GLQVLYIAT 34 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc---CCCcEeCcC
Confidence 45667899999999999987653 455555444
No 473
>PRK13342 recombination factor protein RarA; Reviewed
Probab=85.42 E-value=0.83 Score=46.51 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=27.4
Q ss_pred hhhhhcCCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 80 FDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 80 ~~~~~~~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
+..++......-+++.|.+|+||||+|..+|..+ +.+..-+++
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~~~l~a 69 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPFEALSA 69 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEec
Confidence 3444443333344557999999999999998754 344444443
No 474
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.39 E-value=0.31 Score=42.56 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=29.2
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
|+++.++.|-.|+||||+.+++-..+- ..+..|++|.
T Consensus 1 m~~l~IvaG~NGsGKstv~~~~~~~~~---~~~~~VN~D~ 37 (187)
T COG4185 1 MKRLDIVAGPNGSGKSTVYASTLAPLL---PGIVFVNADE 37 (187)
T ss_pred CceEEEEecCCCCCceeeeeccchhhc---CCeEEECHHH
Confidence 467889999999999999887654443 3688899884
No 475
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=85.32 E-value=0.85 Score=40.64 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=26.2
Q ss_pred CCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 96 gKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
|--|+||||.+..|+.+|...|++ .++..-+.
T Consensus 3 GiDGsGKtT~~~~L~~~l~~~~~~-~~~~~~~~ 34 (186)
T PF02223_consen 3 GIDGSGKTTQIRLLAEALKEKGYK-VIITFPPG 34 (186)
T ss_dssp ESTTSSHHHHHHHHHHHHHHTTEE-EEEEESST
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCc-ccccCCCC
Confidence 567999999999999999999998 44444443
No 476
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=85.17 E-value=1.1 Score=40.82 Aligned_cols=32 Identities=31% Similarity=0.339 Sum_probs=22.1
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
++|.+ .|+.|+||||+|--++ +.|. -+||+|-
T Consensus 3 ~iIgl-TG~igsGKStva~~~~----~~G~--~vidaD~ 34 (201)
T COG0237 3 LIIGL-TGGIGSGKSTVAKILA----ELGF--PVIDADD 34 (201)
T ss_pred eEEEE-ecCCCCCHHHHHHHHH----HcCC--eEEEccH
Confidence 44444 5899999999986544 4454 5678874
No 477
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=84.99 E-value=1.6 Score=43.22 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=28.5
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHC----C--CCEEEEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANN----G--HPTLVVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~----G--~rVLlvD~D~ 127 (413)
..+++.|.+|+|||+++..++..+.+. | .+++.|++..
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 456778999999999999999888643 2 3466667643
No 478
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=84.96 E-value=1.1 Score=42.25 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=22.5
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
++...|.-|+||||+|.-|... .|.+ +||+|-
T Consensus 3 iIGlTGgIgSGKStVs~~L~~~---~G~~--viDaD~ 34 (244)
T PTZ00451 3 LIGLTGGIACGKSTVSRILREE---HHIE--VIDADL 34 (244)
T ss_pred EEEEECCCCCCHHHHHHHHHHH---cCCe--EEehHH
Confidence 4445577899999998776642 2654 599984
No 479
>PLN02318 phosphoribulokinase/uridine kinase
Probab=84.85 E-value=1.1 Score=47.28 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=30.5
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
..++|+.+.|..|+||||++..|+..+ ..+.+|..|-.+
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglL----p~vgvIsmDdy~ 101 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVISMDNYN 101 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhC----CCcEEEEEccee
Confidence 346788888999999999999998765 246778777553
No 480
>PTZ00088 adenylate kinase 1; Provisional
Probab=84.75 E-value=0.82 Score=42.62 Aligned_cols=30 Identities=30% Similarity=0.285 Sum_probs=21.6
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+++.|.+|+||||+|..||..+ | +..|++|
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~---g--~~~is~g 38 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE---N--LKHINMG 38 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---C--CcEEECC
Confidence 3445889999999999998765 3 3455553
No 481
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=84.62 E-value=1 Score=41.66 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=21.0
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHH
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
+.++...|..|+||||++..||..+
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3566677999999999999999766
No 482
>COG3911 Predicted ATPase [General function prediction only]
Probab=84.58 E-value=0.97 Score=39.07 Aligned_cols=27 Identities=41% Similarity=0.629 Sum_probs=21.0
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHP 119 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~r 119 (413)
+.+.|.+|-+|.||||+-++|| ++|.-
T Consensus 9 ~~~fIltGgpGaGKTtLL~aLa----~~Gfa 35 (183)
T COG3911 9 HKRFILTGGPGAGKTTLLAALA----RAGFA 35 (183)
T ss_pred ceEEEEeCCCCCcHHHHHHHHH----HcCce
Confidence 4688889999999999876654 56653
No 483
>PRK14738 gmk guanylate kinase; Provisional
Probab=84.50 E-value=0.92 Score=41.43 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=18.7
Q ss_pred CcEEEEEeCCCcchhhHHHHHHH
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLA 110 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA 110 (413)
...++|+.|..|+||||++..|.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~ 34 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMR 34 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 35677778999999999887764
No 484
>PLN02840 tRNA dimethylallyltransferase
Probab=84.49 E-value=0.98 Score=45.84 Aligned_cols=34 Identities=29% Similarity=0.496 Sum_probs=26.3
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+.++++.|..|+||||+|..||..+. .. +|++|-
T Consensus 21 ~~vi~I~GptgsGKTtla~~La~~~~---~~--iis~Ds 54 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELAKRLN---GE--IISADS 54 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHCC---CC--eEeccc
Confidence 45778889999999999999998773 22 566664
No 485
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=84.46 E-value=1.1 Score=46.29 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=29.8
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHH--CCCCEEEEecC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFAN--NGHPTLVVSTD 126 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~--~G~rVLlvD~D 126 (413)
+++.|..|+|||+++.+++..+.+ .|.+|+.+.++
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~ 180 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGD 180 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 566799999999999999998874 47899999874
No 486
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=84.39 E-value=0.82 Score=47.50 Aligned_cols=50 Identities=12% Similarity=0.040 Sum_probs=39.8
Q ss_pred CcEEEEEe---CCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccc
Q 015096 88 QRKYYMLG---GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDL 139 (413)
Q Consensus 88 ~~~i~v~s---gKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~ 139 (413)
+|.|+|++ ..-|+||||++..|+.+|.+.|+++.+.=- ++|+.-.||.+.
T Consensus 63 gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~~~~lR--ePSlGP~FGiKG 115 (587)
T PRK13507 63 GKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVSGAIR--QPSGGPTMNIKG 115 (587)
T ss_pred CeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCceEEEEe--cCCcCCcCCccc
Confidence 45666654 467999999999999999999999887632 258888898874
No 487
>PLN02748 tRNA dimethylallyltransferase
Probab=84.38 E-value=1.5 Score=45.24 Aligned_cols=33 Identities=33% Similarity=0.555 Sum_probs=26.4
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.++++.|-.|+|||++|..||..+ ..-+|++|-
T Consensus 23 ~~i~i~GptgsGKs~la~~la~~~-----~~eii~~Ds 55 (468)
T PLN02748 23 KVVVVMGPTGSGKSKLAVDLASHF-----PVEIINADS 55 (468)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc-----CeeEEcCch
Confidence 355667899999999999998765 356889983
No 488
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=84.27 E-value=0.62 Score=40.57 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.1
Q ss_pred CcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 98 GGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 98 GGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.|+||||++..||..|. .-++|+|-
T Consensus 1 ~GsGKStvg~~lA~~L~-----~~fiD~D~ 25 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLG-----RPFIDLDD 25 (158)
T ss_dssp TTSSHHHHHHHHHHHHT-----SEEEEHHH
T ss_pred CCCcHHHHHHHHHHHhC-----CCccccCH
Confidence 49999999999999885 36788884
No 489
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=84.23 E-value=0.98 Score=38.36 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.0
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHH
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFA 114 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA 114 (413)
..++++.|.-|+||||++..++..+-
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34677889999999999999998873
No 490
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=84.19 E-value=2.2 Score=38.54 Aligned_cols=45 Identities=20% Similarity=0.202 Sum_probs=37.0
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHh
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSF 135 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~l 135 (413)
..+-++|-.|+|||++--.+-..|..+ +++.+|..|... .=++.+
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l 59 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRL 59 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHH
Confidence 566677999999999999999999887 999999999874 434433
No 491
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=84.16 E-value=1.4 Score=50.98 Aligned_cols=35 Identities=20% Similarity=0.382 Sum_probs=25.6
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
.++.+.|.||+||||+|..++..+.....-...+|
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~ 242 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFID 242 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEee
Confidence 34455599999999999999988876543334444
No 492
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=84.09 E-value=1.1 Score=49.56 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=35.6
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC-CCcchHhh
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFA 136 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~-~~l~~~lg 136 (413)
.++.|+.|.|||++...++..+...|.+|.+||-+-. ..+...+|
T Consensus 433 ~~I~G~tGsGKS~~~~~l~~~~~~~g~~v~iiD~~~sy~~l~~~~g 478 (797)
T TIGR02746 433 IAVVGGSGAGKSFFMQELIVDNLSRGGKVWVIDVGRSYKKLCEMLG 478 (797)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHHcC
Confidence 4555999999999999999988888999999887643 24555554
No 493
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=83.97 E-value=1.2 Score=40.37 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=34.1
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHC--C-CCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANN--G-HPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~--G-~rVLlvD~D~ 127 (413)
..-++.+||.-|+||||++.+|-..+.++ | +++.-++.|-
T Consensus 30 ~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDD 72 (282)
T KOG2878|consen 30 VPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDD 72 (282)
T ss_pred CcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecc
Confidence 36789999999999999999999999875 3 4888888873
No 494
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=83.92 E-value=1.2 Score=49.59 Aligned_cols=41 Identities=27% Similarity=0.375 Sum_probs=32.1
Q ss_pred CCCcEEEEEeCCCcchhhHHHHHHHHHHHH-------CCCCEEEEecC
Q 015096 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFAN-------NGHPTLVVSTD 126 (413)
Q Consensus 86 ~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~-------~G~rVLlvD~D 126 (413)
+..+.-.++-|.+|||||+++-.||..+.. .|++++.+|+.
T Consensus 191 r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~ 238 (852)
T TIGR03346 191 RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG 238 (852)
T ss_pred cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH
Confidence 334445556699999999999999999875 57888888754
No 495
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=83.87 E-value=1.3 Score=47.21 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=23.6
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANN 116 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~ 116 (413)
..+.+++|-+|+||||+...+...+.+.
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l~~~ 187 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLALVKQ 187 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 4688899999999999999888777643
No 496
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=83.81 E-value=1.4 Score=41.08 Aligned_cols=32 Identities=34% Similarity=0.426 Sum_probs=27.4
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
|.|++ +.||||+-..||..+..+|+||++-.+
T Consensus 2 i~~vG---~gGKTtl~~~l~~~~~~~g~~v~~TTT 33 (232)
T TIGR03172 2 IAFVG---AGGKTSTMFWLAAEYRKEGYRVLVTTT 33 (232)
T ss_pred EEEEc---CCcHHHHHHHHHHHHHHCCCeEEEECC
Confidence 45554 479999999999999999999998876
No 497
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=83.71 E-value=1.4 Score=40.38 Aligned_cols=31 Identities=26% Similarity=0.233 Sum_probs=23.4
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.++.+.|.-|+||||++.-|+. .|. -++|+|
T Consensus 6 ~~igitG~igsGKSt~~~~l~~----~g~--~v~d~D 36 (208)
T PRK14731 6 FLVGVTGGIGSGKSTVCRFLAE----MGC--ELFEAD 36 (208)
T ss_pred EEEEEECCCCCCHHHHHHHHHH----CCC--eEEecc
Confidence 4555679999999999987764 465 558888
No 498
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=83.63 E-value=1.6 Score=48.83 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=38.3
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC---CCcchHhhcc
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA---HSLSDSFAQD 138 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~---~~l~~~lg~~ 138 (413)
..+++.|..|||||++|..||..+-..+.+++.+|+... +..+.++|.+
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~ 647 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAP 647 (852)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCC
Confidence 345667999999999999999999888889999998653 3455555543
No 499
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=83.59 E-value=1.4 Score=43.39 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=27.5
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHH--CCCCEEEEe
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFAN--NGHPTLVVS 124 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~--~G~rVLlvD 124 (413)
.-++++|..|+||||+..+|...+.+ .+.|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiE 181 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILE 181 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEec
Confidence 35678899999999999999887753 356777766
No 500
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=83.57 E-value=30 Score=36.23 Aligned_cols=36 Identities=19% Similarity=0.111 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCC
Q 015096 288 QGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPT 323 (413)
Q Consensus 288 ~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~ 323 (413)
.+++..+.++.+|..++.........|.+..|.++.
T Consensus 287 ~~vf~~~srLlERag~~~~~~g~GSITal~~V~~~~ 322 (501)
T TIGR00962 287 GDVFYLHSRLLERAAKLNDEKGGGSLTALPIIETQA 322 (501)
T ss_pred chHHHHHHHHHHHHhhccCCCCCcceEEEEEEECCC
Confidence 455666667767666543222234568888998884
Done!