Query 015096
Match_columns 413
No_of_seqs 344 out of 2527
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 06:37:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iqw_A Tail-anchored protein t 100.0 2.9E-51 1E-55 401.1 24.7 313 78-413 5-322 (334)
2 3io3_A DEHA2D07832P; chaperone 100.0 8.9E-50 3E-54 392.5 20.2 312 78-413 7-331 (348)
3 3ug7_A Arsenical pump-driving 100.0 2.1E-47 7.2E-52 377.0 35.3 307 86-413 23-334 (349)
4 3zq6_A Putative arsenical pump 100.0 4.3E-47 1.5E-51 371.3 31.1 304 88-413 13-319 (324)
5 2woo_A ATPase GET3; tail-ancho 100.0 9.6E-46 3.3E-50 362.4 26.3 310 79-413 9-319 (329)
6 2woj_A ATPase GET3; tail-ancho 100.0 1.3E-44 4.5E-49 357.3 28.7 314 78-413 7-336 (354)
7 3igf_A ALL4481 protein; two-do 100.0 5.3E-41 1.8E-45 332.2 15.3 277 88-411 1-286 (374)
8 1ihu_A Arsenical pump-driving 100.0 8.1E-36 2.8E-40 313.8 14.3 287 88-411 7-295 (589)
9 1ihu_A Arsenical pump-driving 100.0 4.3E-32 1.5E-36 285.4 21.1 269 78-410 313-584 (589)
10 3bfv_A CAPA1, CAPB2, membrane 99.9 3E-27 1E-31 225.0 10.6 234 18-355 18-257 (271)
11 3la6_A Tyrosine-protein kinase 99.9 4.5E-27 1.5E-31 225.3 9.6 194 70-356 69-268 (286)
12 3cio_A ETK, tyrosine-protein k 99.9 1.2E-25 4.1E-30 216.9 10.1 193 71-356 82-280 (299)
13 3fwy_A Light-independent proto 99.9 2.6E-24 8.9E-29 208.5 7.8 234 87-412 47-291 (314)
14 3kjh_A CO dehydrogenase/acetyl 99.9 7.7E-25 2.6E-29 204.4 2.6 245 90-412 2-250 (254)
15 3end_A Light-independent proto 99.9 2.4E-24 8.2E-29 208.3 5.6 235 86-412 39-284 (307)
16 3ea0_A ATPase, para family; al 99.9 5.8E-23 2E-27 191.4 12.5 179 87-356 3-186 (245)
17 1wcv_1 SOJ, segregation protei 99.9 4E-24 1.4E-28 201.5 4.6 175 85-356 3-183 (257)
18 3k9g_A PF-32 protein; ssgcid, 99.9 1.8E-24 6.3E-29 204.7 1.6 246 78-412 17-264 (267)
19 4dzz_A Plasmid partitioning pr 99.9 3.2E-23 1.1E-27 187.9 6.4 51 88-138 1-51 (206)
20 2ph1_A Nucleotide-binding prot 99.9 8.9E-22 3E-26 186.0 15.5 180 84-354 14-194 (262)
21 1hyq_A MIND, cell division inh 99.9 2.2E-23 7.6E-28 196.6 3.1 171 88-355 2-175 (263)
22 1g3q_A MIND ATPase, cell divis 99.9 1.6E-21 5.6E-26 180.7 13.2 173 88-356 2-177 (237)
23 3pg5_A Uncharacterized protein 99.9 3.9E-21 1.3E-25 190.1 14.3 49 88-136 1-49 (361)
24 3ez9_A Para; DNA binding, wing 99.8 3.7E-22 1.3E-26 200.3 5.8 54 86-139 109-168 (403)
25 3q9l_A Septum site-determining 99.8 1.2E-21 4.2E-26 184.0 8.8 176 88-355 2-186 (260)
26 2oze_A ORF delta'; para, walke 99.8 4.8E-22 1.6E-26 191.1 5.8 190 80-355 26-225 (298)
27 3ez2_A Plasmid partition prote 99.8 3.2E-21 1.1E-25 193.1 10.1 54 86-139 106-165 (398)
28 1cp2_A CP2, nitrogenase iron p 99.8 1.2E-21 4.1E-26 185.3 5.3 48 88-136 1-48 (269)
29 3cwq_A Para family chromosome 99.8 1.7E-21 5.8E-26 178.1 4.7 48 89-137 1-48 (209)
30 2afh_E Nitrogenase iron protei 99.8 4.6E-20 1.6E-24 176.6 11.6 48 88-136 2-49 (289)
31 2xj4_A MIPZ; replication, cell 99.8 1.3E-21 4.4E-26 187.4 -0.1 52 88-139 4-56 (286)
32 3fkq_A NTRC-like two-domain pr 99.8 8.5E-20 2.9E-24 181.3 8.9 55 86-140 141-195 (373)
33 1byi_A Dethiobiotin synthase; 99.7 5.7E-17 1.9E-21 148.8 14.9 41 315-355 140-180 (224)
34 2xxa_A Signal recognition part 99.5 2E-13 7E-18 137.5 12.4 42 88-130 100-142 (433)
35 1j8m_F SRP54, signal recogniti 99.4 1.7E-12 5.7E-17 124.6 11.2 42 88-130 98-139 (297)
36 1zu4_A FTSY; GTPase, signal re 99.4 1.4E-11 4.7E-16 119.4 17.0 42 87-129 104-145 (320)
37 1ls1_A Signal recognition part 99.3 9.9E-12 3.4E-16 119.1 12.5 42 87-129 97-138 (295)
38 2ffh_A Protein (FFH); SRP54, s 99.3 4E-11 1.4E-15 120.1 13.6 42 87-129 97-138 (425)
39 1yrb_A ATP(GTP)binding protein 99.2 6.5E-11 2.2E-15 110.7 12.7 43 87-130 12-54 (262)
40 3qxc_A Dethiobiotin synthetase 99.2 3E-10 1E-14 105.5 14.4 45 80-124 13-57 (242)
41 3of5_A Dethiobiotin synthetase 99.2 6.5E-11 2.2E-15 109.2 9.5 41 315-355 142-182 (228)
42 3dm5_A SRP54, signal recogniti 99.2 7.9E-11 2.7E-15 118.2 10.5 40 90-129 101-140 (443)
43 2j37_W Signal recognition part 99.1 6.9E-10 2.4E-14 113.4 13.7 42 88-130 101-142 (504)
44 2r8r_A Sensor protein; KDPD, P 99.0 8E-10 2.7E-14 100.9 10.4 48 87-134 4-51 (228)
45 3fgn_A Dethiobiotin synthetase 99.0 1.6E-09 5.4E-14 101.2 11.6 40 315-354 159-198 (251)
46 2v3c_C SRP54, signal recogniti 99.0 1.3E-09 4.3E-14 109.8 11.5 40 89-129 100-139 (432)
47 1vma_A Cell division protein F 99.0 4.8E-09 1.6E-13 100.8 14.9 42 87-129 103-144 (306)
48 3kl4_A SRP54, signal recogniti 99.0 1.4E-09 4.8E-14 109.1 11.5 41 89-129 97-137 (433)
49 2px0_A Flagellar biosynthesis 98.9 8.5E-09 2.9E-13 98.7 13.5 42 87-129 104-146 (296)
50 3p32_A Probable GTPase RV1496/ 98.8 1.1E-07 3.7E-12 93.3 14.7 42 89-130 79-120 (355)
51 3pzx_A Formate--tetrahydrofola 98.2 1.2E-06 4E-11 87.3 6.4 50 87-139 56-109 (557)
52 2yhs_A FTSY, cell division pro 98.0 6.8E-05 2.3E-09 76.0 13.9 41 88-129 293-333 (503)
53 1g5t_A COB(I)alamin adenosyltr 97.8 8E-05 2.7E-09 66.3 9.5 37 90-127 30-66 (196)
54 3e70_C DPA, signal recognition 97.8 0.00014 5E-09 70.1 12.1 41 89-129 129-169 (328)
55 1rj9_A FTSY, signal recognitio 97.8 0.00039 1.3E-08 66.4 14.5 41 88-129 102-142 (304)
56 4a0g_A Adenosylmethionine-8-am 97.4 0.0012 4.1E-08 71.6 13.7 40 315-354 233-272 (831)
57 2obn_A Hypothetical protein; s 97.4 0.0024 8.1E-08 61.8 14.2 38 87-124 151-188 (349)
58 2og2_A Putative signal recogni 97.1 0.0051 1.7E-07 60.0 13.6 41 88-129 157-197 (359)
59 3b9q_A Chloroplast SRP recepto 97.1 0.0065 2.2E-07 57.8 13.6 41 88-129 100-140 (302)
60 1u94_A RECA protein, recombina 97.0 0.00048 1.6E-08 67.2 5.1 53 76-128 47-102 (356)
61 2yvu_A Probable adenylyl-sulfa 97.0 0.00068 2.3E-08 59.3 5.4 39 89-127 13-51 (186)
62 2p67_A LAO/AO transport system 96.9 0.001 3.4E-08 64.5 6.4 41 88-129 56-96 (341)
63 1xjc_A MOBB protein homolog; s 96.9 0.0011 3.7E-08 57.7 5.7 41 88-129 4-44 (169)
64 2dr3_A UPF0273 protein PH0284; 96.7 0.002 6.7E-08 58.5 6.0 53 76-128 8-62 (247)
65 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0015 5.2E-08 60.6 5.2 38 90-127 5-42 (260)
66 3bh0_A DNAB-like replicative h 96.5 0.0025 8.5E-08 61.0 5.1 53 76-128 54-107 (315)
67 1s1m_A CTP synthase; CTP synth 96.4 0.048 1.6E-06 55.8 14.5 41 88-128 3-44 (545)
68 2zts_A Putative uncharacterize 96.4 0.004 1.4E-07 56.5 5.9 53 76-128 15-70 (251)
69 3io5_A Recombination and repai 96.4 0.011 3.6E-07 56.6 8.9 51 76-127 10-68 (333)
70 1nks_A Adenylate kinase; therm 96.4 0.0026 9E-08 55.3 4.4 37 90-126 2-38 (194)
71 3bgw_A DNAB-like replicative h 96.4 0.0028 9.4E-08 63.7 5.0 55 75-129 182-237 (444)
72 1xp8_A RECA protein, recombina 96.4 0.0032 1.1E-07 61.6 5.3 52 76-128 58-113 (366)
73 4a1f_A DNAB helicase, replicat 96.3 0.0037 1.3E-07 60.4 5.2 52 78-129 34-86 (338)
74 2wsm_A Hydrogenase expression/ 96.3 0.0032 1.1E-07 56.2 4.4 39 90-129 31-69 (221)
75 2cvh_A DNA repair and recombin 96.1 0.0036 1.2E-07 55.8 4.1 48 78-128 7-56 (220)
76 1np6_A Molybdopterin-guanine d 96.0 0.0089 3.1E-07 52.0 5.7 41 89-129 6-46 (174)
77 1rz3_A Hypothetical protein rb 96.0 0.0083 2.8E-07 53.1 5.6 41 89-129 22-62 (201)
78 1q57_A DNA primase/helicase; d 95.9 0.0064 2.2E-07 61.9 5.3 53 76-128 228-282 (503)
79 1vco_A CTP synthetase; tetrame 95.9 0.12 4.1E-06 53.0 14.6 41 88-128 12-53 (550)
80 2zr9_A Protein RECA, recombina 95.9 0.0072 2.5E-07 58.7 5.3 51 77-127 46-99 (349)
81 2w58_A DNAI, primosome compone 95.8 0.0079 2.7E-07 53.0 4.8 36 90-125 55-90 (202)
82 2w0m_A SSO2452; RECA, SSPF, un 95.8 0.0089 3E-07 53.4 5.1 39 90-128 24-62 (235)
83 3bos_A Putative DNA replicatio 95.8 0.011 3.7E-07 53.0 5.7 39 89-127 52-90 (242)
84 1uj2_A Uridine-cytidine kinase 95.8 0.0064 2.2E-07 55.9 4.2 40 89-128 22-66 (252)
85 1m7g_A Adenylylsulfate kinase; 95.7 0.0082 2.8E-07 53.5 4.6 40 88-127 24-64 (211)
86 2q6t_A DNAB replication FORK h 95.7 0.0095 3.3E-07 59.7 5.5 54 75-128 185-240 (444)
87 2rdo_7 EF-G, elongation factor 95.7 0.027 9.3E-07 59.8 9.3 41 314-355 107-147 (704)
88 3hr8_A Protein RECA; alpha and 95.7 0.011 3.8E-07 57.5 5.6 52 77-128 46-100 (356)
89 1kht_A Adenylate kinase; phosp 95.7 0.0071 2.4E-07 52.4 3.8 37 90-126 4-40 (192)
90 3uie_A Adenylyl-sulfate kinase 95.6 0.013 4.6E-07 51.6 5.6 39 89-127 25-63 (200)
91 2pez_A Bifunctional 3'-phospho 95.6 0.013 4.4E-07 50.6 5.1 38 90-127 6-43 (179)
92 1a7j_A Phosphoribulokinase; tr 95.6 0.008 2.7E-07 56.8 4.0 40 90-129 6-45 (290)
93 2hf9_A Probable hydrogenase ni 95.6 0.01 3.4E-07 53.1 4.5 38 89-128 39-76 (226)
94 1qhx_A CPT, protein (chloramph 95.5 0.0076 2.6E-07 51.8 3.5 34 90-126 4-37 (178)
95 2r6a_A DNAB helicase, replicat 95.5 0.013 4.5E-07 58.8 5.7 53 76-128 189-243 (454)
96 3ec2_A DNA replication protein 95.4 0.011 3.7E-07 51.2 4.0 35 90-124 39-74 (180)
97 2c5m_A CTP synthase; cytidine 95.3 0.26 8.8E-06 45.1 12.6 43 86-128 21-64 (294)
98 2pbr_A DTMP kinase, thymidylat 95.3 0.021 7.3E-07 49.5 5.5 34 91-124 2-35 (195)
99 1ly1_A Polynucleotide kinase; 95.2 0.015 5.3E-07 49.7 4.2 34 89-126 2-35 (181)
100 2z0h_A DTMP kinase, thymidylat 95.2 0.023 8E-07 49.4 5.4 35 91-125 2-36 (197)
101 2gks_A Bifunctional SAT/APS ki 95.1 0.015 5.3E-07 59.8 4.8 39 89-127 372-410 (546)
102 3iev_A GTP-binding protein ERA 95.1 0.035 1.2E-06 52.7 6.9 40 314-354 94-134 (308)
103 2h5e_A Peptide chain release f 95.1 0.068 2.3E-06 54.8 9.4 41 314-355 107-147 (529)
104 2qgz_A Helicase loader, putati 95.1 0.02 6.7E-07 54.5 5.0 36 90-125 153-189 (308)
105 2b8t_A Thymidine kinase; deoxy 95.0 0.026 9E-07 51.1 5.5 35 90-124 13-47 (223)
106 2kjq_A DNAA-related protein; s 95.0 0.028 9.6E-07 47.4 5.3 36 91-126 38-73 (149)
107 2z43_A DNA repair and recombin 95.0 0.012 4.2E-07 56.3 3.3 53 75-127 91-151 (324)
108 1cr0_A DNA primase/helicase; R 95.0 0.026 8.9E-07 53.0 5.5 39 90-128 36-75 (296)
109 1v5w_A DMC1, meiotic recombina 94.9 0.021 7.2E-07 55.2 4.7 53 75-127 106-166 (343)
110 1jbk_A CLPB protein; beta barr 94.9 0.028 9.6E-07 48.0 5.1 26 90-115 44-69 (195)
111 2orw_A Thymidine kinase; TMTK, 94.8 0.025 8.4E-07 49.5 4.5 36 90-125 4-39 (184)
112 2p65_A Hypothetical protein PF 94.8 0.026 9E-07 48.1 4.7 26 90-115 44-69 (187)
113 2axn_A 6-phosphofructo-2-kinas 94.8 0.026 8.8E-07 57.8 5.3 41 87-127 33-73 (520)
114 1x6v_B Bifunctional 3'-phospho 94.6 0.029 9.8E-07 58.6 5.0 39 89-127 52-90 (630)
115 1nn5_A Similar to deoxythymidy 94.5 0.038 1.3E-06 48.8 5.2 35 90-124 10-44 (215)
116 2plr_A DTMP kinase, probable t 94.5 0.036 1.2E-06 48.7 4.9 34 90-124 5-38 (213)
117 1m8p_A Sulfate adenylyltransfe 94.4 0.03 1E-06 58.0 4.7 39 89-127 396-435 (573)
118 1xx6_A Thymidine kinase; NESG, 94.3 0.051 1.8E-06 47.9 5.5 35 90-124 9-43 (191)
119 3nva_A CTP synthase; rossman f 94.3 1.2 4.1E-05 45.1 16.0 41 88-128 3-44 (535)
120 1n0w_A DNA repair protein RAD5 94.3 0.024 8.2E-07 51.1 3.4 51 77-127 10-68 (243)
121 1gvn_B Zeta; postsegregational 94.3 0.027 9.2E-07 53.0 3.8 37 88-127 32-68 (287)
122 2p5t_B PEZT; postsegregational 94.2 0.031 1.1E-06 51.3 4.0 37 89-128 32-68 (253)
123 3t61_A Gluconokinase; PSI-biol 94.2 0.024 8.2E-07 49.9 3.0 33 90-127 19-51 (202)
124 3trf_A Shikimate kinase, SK; a 94.2 0.022 7.6E-07 49.2 2.8 32 90-126 6-37 (185)
125 2rhm_A Putative kinase; P-loop 94.0 0.033 1.1E-06 48.2 3.6 33 89-126 5-37 (193)
126 1wf3_A GTP-binding protein; GT 94.0 0.16 5.4E-06 48.0 8.6 41 314-355 88-130 (301)
127 2wwf_A Thymidilate kinase, put 94.0 0.055 1.9E-06 47.7 5.1 35 90-124 11-45 (212)
128 2r2a_A Uncharacterized protein 94.0 0.03 1E-06 49.7 3.3 37 90-126 6-48 (199)
129 1e6c_A Shikimate kinase; phosp 94.0 0.027 9.2E-07 48.0 2.9 31 91-126 4-34 (173)
130 2i1q_A DNA repair and recombin 93.9 0.03 1E-06 53.3 3.3 52 76-127 83-152 (322)
131 3d3q_A TRNA delta(2)-isopenten 93.9 0.043 1.5E-06 52.9 4.4 36 88-128 6-41 (340)
132 2ze6_A Isopentenyl transferase 93.9 0.04 1.4E-06 50.7 4.1 33 90-127 2-34 (253)
133 3lw7_A Adenylate kinase relate 93.8 0.028 9.4E-07 47.6 2.6 27 91-121 3-29 (179)
134 1g8f_A Sulfate adenylyltransfe 93.6 0.047 1.6E-06 55.6 4.2 38 90-127 396-435 (511)
135 2g0t_A Conserved hypothetical 93.6 0.17 5.8E-06 48.8 7.9 39 87-125 168-206 (350)
136 4edh_A DTMP kinase, thymidylat 93.6 0.08 2.7E-06 47.4 5.3 38 90-128 7-44 (213)
137 3foz_A TRNA delta(2)-isopenten 93.5 0.08 2.7E-06 50.3 5.5 37 86-127 7-43 (316)
138 2iyv_A Shikimate kinase, SK; t 93.5 0.022 7.5E-07 49.2 1.5 32 91-127 4-35 (184)
139 4eun_A Thermoresistant glucoki 93.5 0.054 1.9E-06 47.6 4.1 33 90-127 30-62 (200)
140 3kb2_A SPBC2 prophage-derived 93.5 0.044 1.5E-06 46.4 3.3 32 91-127 3-34 (173)
141 1via_A Shikimate kinase; struc 93.5 0.035 1.2E-06 47.6 2.7 31 91-126 6-36 (175)
142 1gtv_A TMK, thymidylate kinase 93.5 0.026 9E-07 49.8 1.9 35 91-125 2-36 (214)
143 1l8q_A Chromosomal replication 93.4 0.071 2.4E-06 50.6 5.0 36 91-126 39-74 (324)
144 1qf9_A UMP/CMP kinase, protein 93.4 0.051 1.8E-06 46.8 3.7 34 88-126 5-38 (194)
145 1tev_A UMP-CMP kinase; ploop, 93.4 0.052 1.8E-06 46.9 3.7 32 90-126 4-35 (196)
146 3ld9_A DTMP kinase, thymidylat 93.4 0.063 2.2E-06 48.5 4.4 41 89-129 21-62 (223)
147 1nlf_A Regulatory protein REPA 93.4 0.08 2.7E-06 49.2 5.2 26 90-115 31-56 (279)
148 1d2e_A Elongation factor TU (E 93.3 0.75 2.6E-05 45.0 12.3 43 313-355 90-132 (397)
149 3c8u_A Fructokinase; YP_612366 93.3 0.12 4E-06 45.7 5.9 40 89-128 22-61 (208)
150 3e1s_A Exodeoxyribonuclease V, 93.3 0.076 2.6E-06 55.0 5.2 35 90-124 205-239 (574)
151 3tqc_A Pantothenate kinase; bi 93.3 0.089 3E-06 50.3 5.3 40 89-128 92-133 (321)
152 3n70_A Transport activator; si 93.2 0.034 1.2E-06 46.3 2.2 34 92-126 27-60 (145)
153 3hjn_A DTMP kinase, thymidylat 93.2 0.099 3.4E-06 46.2 5.3 34 91-124 2-35 (197)
154 2ehv_A Hypothetical protein PH 93.2 0.11 3.7E-06 46.9 5.6 51 78-128 17-70 (251)
155 1y63_A LMAJ004144AAA protein; 93.2 0.059 2E-06 46.7 3.7 33 90-126 11-43 (184)
156 3cmw_A Protein RECA, recombina 93.2 0.063 2.1E-06 62.0 4.8 54 75-128 715-771 (1706)
157 4b3f_X DNA-binding protein smu 93.1 0.081 2.8E-06 55.5 5.2 36 90-125 206-241 (646)
158 2v54_A DTMP kinase, thymidylat 93.0 0.053 1.8E-06 47.4 3.2 33 91-125 6-38 (204)
159 3vaa_A Shikimate kinase, SK; s 93.0 0.048 1.6E-06 47.9 2.8 32 90-126 26-57 (199)
160 1knq_A Gluconate kinase; ALFA/ 93.0 0.098 3.4E-06 44.6 4.8 33 90-127 9-41 (175)
161 1ukz_A Uridylate kinase; trans 92.9 0.058 2E-06 47.3 3.2 33 89-126 15-47 (203)
162 3crm_A TRNA delta(2)-isopenten 92.8 0.068 2.3E-06 51.1 3.8 36 88-128 4-39 (323)
163 3cmw_A Protein RECA, recombina 92.8 0.075 2.6E-06 61.3 4.8 64 75-138 366-434 (1706)
164 2qby_B CDC6 homolog 3, cell di 92.8 0.077 2.6E-06 51.2 4.2 37 89-125 45-89 (384)
165 2cdn_A Adenylate kinase; phosp 92.8 0.072 2.4E-06 46.7 3.6 33 89-126 20-52 (201)
166 2bwj_A Adenylate kinase 5; pho 92.7 0.042 1.4E-06 47.8 2.1 32 90-126 13-44 (199)
167 3t15_A Ribulose bisphosphate c 92.7 0.07 2.4E-06 50.2 3.7 33 90-125 37-69 (293)
168 2c95_A Adenylate kinase 1; tra 92.7 0.062 2.1E-06 46.6 3.1 32 90-126 10-41 (196)
169 1odf_A YGR205W, hypothetical 3 92.7 0.073 2.5E-06 50.1 3.8 40 89-128 31-73 (290)
170 1zp6_A Hypothetical protein AT 92.7 0.077 2.6E-06 45.9 3.7 34 90-126 10-43 (191)
171 2chg_A Replication factor C sm 92.6 0.042 1.4E-06 48.1 1.9 28 92-119 41-68 (226)
172 1kag_A SKI, shikimate kinase I 92.5 0.051 1.7E-06 46.2 2.3 32 90-126 5-36 (173)
173 2www_A Methylmalonic aciduria 92.5 0.18 6E-06 48.7 6.3 40 90-129 75-114 (349)
174 3cmu_A Protein RECA, recombina 92.5 0.083 2.8E-06 61.8 4.5 52 76-127 1411-1465(2050)
175 2f1r_A Molybdopterin-guanine d 92.5 0.11 3.9E-06 44.7 4.5 38 89-127 3-40 (171)
176 2grj_A Dephospho-COA kinase; T 92.4 0.087 3E-06 46.4 3.7 34 89-127 12-45 (192)
177 2j9r_A Thymidine kinase; TK1, 92.4 0.19 6.4E-06 45.1 5.9 36 89-124 28-63 (214)
178 1ltq_A Polynucleotide kinase; 92.4 0.077 2.6E-06 49.6 3.6 34 89-126 2-35 (301)
179 4fcw_A Chaperone protein CLPB; 92.4 0.12 4.2E-06 48.3 5.0 48 90-137 48-98 (311)
180 2v1u_A Cell division control p 92.4 0.11 3.7E-06 49.9 4.7 38 90-127 45-88 (387)
181 2vhj_A Ntpase P4, P4; non- hyd 92.3 0.046 1.6E-06 52.3 1.8 47 76-125 109-156 (331)
182 3lv8_A DTMP kinase, thymidylat 92.2 0.14 4.7E-06 46.7 5.0 40 90-129 28-67 (236)
183 2xex_A Elongation factor G; GT 92.2 0.9 3.1E-05 48.0 11.9 41 314-355 100-140 (693)
184 2c78_A Elongation factor TU-A; 92.2 1.4 4.6E-05 43.2 12.5 42 314-355 100-141 (405)
185 3iij_A Coilin-interacting nucl 92.1 0.074 2.5E-06 45.7 2.9 32 90-126 12-43 (180)
186 1sq5_A Pantothenate kinase; P- 92.1 0.13 4.6E-06 48.6 4.9 39 90-128 81-121 (308)
187 3v9p_A DTMP kinase, thymidylat 92.0 0.12 4.2E-06 46.7 4.3 38 90-128 26-67 (227)
188 3upu_A ATP-dependent DNA helic 92.0 0.15 5E-06 51.1 5.2 34 91-124 47-81 (459)
189 3lda_A DNA repair protein RAD5 91.9 0.079 2.7E-06 52.3 3.0 53 75-127 162-222 (400)
190 1jjv_A Dephospho-COA kinase; P 91.8 0.1 3.5E-06 45.8 3.5 32 90-127 3-34 (206)
191 1dar_A EF-G, elongation factor 91.8 0.81 2.8E-05 48.3 10.9 41 314-355 102-142 (691)
192 3syl_A Protein CBBX; photosynt 91.7 0.14 4.7E-06 47.9 4.5 35 91-125 69-107 (309)
193 3cmu_A Protein RECA, recombina 91.7 0.11 3.9E-06 60.7 4.5 55 75-129 366-423 (2050)
194 4tmk_A Protein (thymidylate ki 91.7 0.16 5.6E-06 45.4 4.7 39 90-129 4-43 (213)
195 1zuh_A Shikimate kinase; alpha 91.7 0.11 3.6E-06 44.1 3.3 32 90-126 8-39 (168)
196 1fnn_A CDC6P, cell division co 91.6 0.19 6.5E-06 48.4 5.4 39 91-129 46-85 (389)
197 3bs4_A Uncharacterized protein 91.5 0.24 8.3E-06 45.7 5.8 53 76-128 6-60 (260)
198 2qby_A CDC6 homolog 1, cell di 91.5 0.13 4.3E-06 49.4 4.0 37 90-126 46-85 (386)
199 2qt1_A Nicotinamide riboside k 91.4 0.095 3.3E-06 46.1 2.8 35 90-128 22-56 (207)
200 4eaq_A DTMP kinase, thymidylat 91.4 0.18 6.2E-06 45.5 4.7 34 89-123 26-59 (229)
201 2vli_A Antibiotic resistance p 91.4 0.078 2.7E-06 45.4 2.2 29 90-121 6-34 (183)
202 3exa_A TRNA delta(2)-isopenten 91.4 0.15 5.2E-06 48.5 4.3 34 89-127 3-36 (322)
203 2if2_A Dephospho-COA kinase; a 91.4 0.08 2.7E-06 46.4 2.2 31 91-127 3-33 (204)
204 3tlx_A Adenylate kinase 2; str 91.3 0.15 5E-06 46.5 4.0 33 89-126 29-61 (243)
205 4hlc_A DTMP kinase, thymidylat 91.3 0.19 6.4E-06 44.7 4.6 34 90-124 3-36 (205)
206 1w5s_A Origin recognition comp 91.2 0.18 6.2E-06 49.0 4.8 40 89-128 50-97 (412)
207 3cm0_A Adenylate kinase; ATP-b 91.1 0.15 5.3E-06 43.7 3.8 32 90-126 5-36 (186)
208 2bjv_A PSP operon transcriptio 91.1 0.12 4.1E-06 47.4 3.2 36 92-127 32-67 (265)
209 3ake_A Cytidylate kinase; CMP 91.1 0.09 3.1E-06 46.0 2.3 32 91-127 4-35 (208)
210 3a8t_A Adenylate isopentenyltr 91.0 0.14 4.8E-06 49.2 3.7 35 89-128 40-74 (339)
211 1bif_A 6-phosphofructo-2-kinas 91.0 0.2 7E-06 50.3 5.1 40 87-126 37-76 (469)
212 2z4s_A Chromosomal replication 90.9 0.16 5.6E-06 50.6 4.3 36 91-126 132-169 (440)
213 3be4_A Adenylate kinase; malar 90.9 0.1 3.6E-06 46.4 2.5 31 91-126 7-37 (217)
214 1w36_D RECD, exodeoxyribonucle 90.8 0.2 6.7E-06 52.2 4.9 36 89-124 164-203 (608)
215 1uf9_A TT1252 protein; P-loop, 90.7 0.17 5.9E-06 43.9 3.7 33 89-127 8-40 (203)
216 1zd8_A GTP:AMP phosphotransfer 90.7 0.1 3.4E-06 46.8 2.2 32 90-126 8-39 (227)
217 2pt5_A Shikimate kinase, SK; a 90.6 0.16 5.6E-06 42.7 3.5 31 91-126 2-32 (168)
218 3fb4_A Adenylate kinase; psych 90.5 0.16 5.5E-06 44.8 3.5 22 92-113 3-24 (216)
219 1aky_A Adenylate kinase; ATP:A 90.5 0.16 5.4E-06 45.2 3.4 32 90-126 5-36 (220)
220 4a74_A DNA repair and recombin 90.5 0.18 6.1E-06 44.7 3.7 51 77-127 11-69 (231)
221 3asz_A Uridine kinase; cytidin 90.3 0.23 7.9E-06 43.6 4.2 35 91-128 8-42 (211)
222 1e4v_A Adenylate kinase; trans 90.2 0.16 5.3E-06 45.0 3.1 29 92-125 3-31 (214)
223 1ofh_A ATP-dependent HSL prote 90.2 0.26 9E-06 45.8 4.8 32 92-126 53-84 (310)
224 4dcu_A GTP-binding protein ENG 90.2 0.68 2.3E-05 46.2 8.1 39 314-353 104-142 (456)
225 2jaq_A Deoxyguanosine kinase; 90.1 0.19 6.4E-06 43.7 3.4 24 91-114 2-25 (205)
226 1zak_A Adenylate kinase; ATP:A 90.0 0.14 4.8E-06 45.6 2.6 24 90-113 6-29 (222)
227 2qm8_A GTPase/ATPase; G protei 90.0 0.42 1.4E-05 45.8 6.1 39 90-128 56-94 (337)
228 2xb4_A Adenylate kinase; ATP-b 90.0 0.17 5.6E-06 45.4 3.0 31 91-126 2-32 (223)
229 1vht_A Dephospho-COA kinase; s 89.9 0.21 7.3E-06 44.2 3.7 32 89-126 4-35 (218)
230 2f6r_A COA synthase, bifunctio 89.7 0.19 6.6E-06 46.8 3.4 33 89-127 75-107 (281)
231 2qz4_A Paraplegin; AAA+, SPG7, 89.7 0.33 1.1E-05 43.9 5.0 33 91-126 41-73 (262)
232 1pzn_A RAD51, DNA repair and r 89.5 0.21 7.1E-06 48.2 3.6 52 76-127 116-175 (349)
233 1ak2_A Adenylate kinase isoenz 89.4 0.23 7.7E-06 44.7 3.5 31 91-126 18-48 (233)
234 2orv_A Thymidine kinase; TP4A 89.3 0.46 1.6E-05 43.0 5.4 36 89-124 19-54 (234)
235 2gk6_A Regulator of nonsense t 89.2 0.32 1.1E-05 50.7 5.0 36 90-125 196-232 (624)
236 3te6_A Regulatory protein SIR3 89.0 0.38 1.3E-05 45.8 4.9 29 88-116 44-72 (318)
237 1tue_A Replication protein E1; 88.8 0.24 8.3E-06 44.1 3.2 25 89-113 58-82 (212)
238 3eph_A TRNA isopentenyltransfe 88.8 0.41 1.4E-05 47.1 5.0 34 89-127 2-35 (409)
239 2bdt_A BH3686; alpha-beta prot 88.7 0.27 9.1E-06 42.4 3.3 33 90-126 3-35 (189)
240 3zvl_A Bifunctional polynucleo 88.6 0.23 7.7E-06 49.2 3.2 36 87-127 256-291 (416)
241 2qor_A Guanylate kinase; phosp 88.5 0.17 6E-06 44.4 2.0 24 90-113 13-36 (204)
242 3cr8_A Sulfate adenylyltranfer 88.4 0.3 1E-05 50.2 3.9 38 90-127 370-408 (552)
243 3pxg_A Negative regulator of g 88.4 0.31 1.1E-05 48.9 4.1 36 91-126 203-245 (468)
244 4ag6_A VIRB4 ATPase, type IV s 88.3 0.46 1.6E-05 46.3 5.1 44 93-136 39-83 (392)
245 3dl0_A Adenylate kinase; phosp 88.3 0.24 8E-06 43.8 2.8 30 92-126 3-32 (216)
246 3ney_A 55 kDa erythrocyte memb 88.1 0.29 9.8E-06 43.3 3.1 25 89-113 19-43 (197)
247 1um8_A ATP-dependent CLP prote 88.1 0.38 1.3E-05 46.5 4.3 32 91-125 74-105 (376)
248 3umf_A Adenylate kinase; rossm 88.0 0.38 1.3E-05 43.1 4.0 24 90-113 30-53 (217)
249 3ch4_B Pmkase, phosphomevalona 88.0 0.28 9.6E-06 43.5 3.0 26 88-113 10-35 (202)
250 2jeo_A Uridine-cytidine kinase 87.9 0.5 1.7E-05 42.7 4.8 38 90-127 26-68 (245)
251 1hqc_A RUVB; extended AAA-ATPa 87.9 0.44 1.5E-05 44.7 4.5 43 91-136 40-82 (324)
252 2a5y_B CED-4; apoptosis; HET: 87.8 0.3 1E-05 50.0 3.6 23 89-111 152-174 (549)
253 2wjy_A Regulator of nonsense t 87.8 0.44 1.5E-05 51.2 5.0 35 90-124 372-407 (800)
254 1d2n_A N-ethylmaleimide-sensit 87.7 0.55 1.9E-05 43.0 5.0 35 88-125 63-97 (272)
255 1tf7_A KAIC; homohexamer, hexa 87.7 0.49 1.7E-05 48.2 5.1 37 90-126 282-318 (525)
256 1njg_A DNA polymerase III subu 87.5 0.35 1.2E-05 42.5 3.5 27 90-116 46-72 (250)
257 1lv7_A FTSH; alpha/beta domain 87.5 0.5 1.7E-05 42.9 4.6 31 92-125 48-78 (257)
258 3aez_A Pantothenate kinase; tr 87.4 0.71 2.4E-05 43.7 5.7 40 89-128 90-131 (312)
259 2vo1_A CTP synthase 1; pyrimid 87.4 1 3.5E-05 41.5 6.3 43 86-128 21-64 (295)
260 2r44_A Uncharacterized protein 87.3 0.55 1.9E-05 44.4 4.9 43 92-137 49-91 (331)
261 1sxj_A Activator 1 95 kDa subu 87.0 0.39 1.3E-05 48.8 3.9 34 90-126 78-111 (516)
262 3h4m_A Proteasome-activating n 86.9 0.47 1.6E-05 43.7 4.0 32 91-125 53-84 (285)
263 3do6_A Formate--tetrahydrofola 86.9 0.45 1.5E-05 47.3 4.0 51 87-139 42-95 (543)
264 3u61_B DNA polymerase accessor 86.7 0.43 1.5E-05 45.0 3.7 35 89-126 48-82 (324)
265 3tau_A Guanylate kinase, GMP k 86.5 0.37 1.3E-05 42.5 3.0 24 90-113 9-32 (208)
266 1cke_A CK, MSSA, protein (cyti 86.4 0.45 1.5E-05 42.1 3.5 31 91-126 7-37 (227)
267 1kgd_A CASK, peripheral plasma 86.4 0.38 1.3E-05 41.3 2.9 24 90-113 6-29 (180)
268 1c9k_A COBU, adenosylcobinamid 86.4 0.33 1.1E-05 42.2 2.5 31 92-126 2-32 (180)
269 3hws_A ATP-dependent CLP prote 85.9 0.54 1.8E-05 45.2 4.0 31 92-125 54-84 (363)
270 1ojl_A Transcriptional regulat 85.7 0.32 1.1E-05 45.8 2.2 36 92-127 28-63 (304)
271 3sr0_A Adenylate kinase; phosp 85.7 0.52 1.8E-05 41.8 3.5 22 92-113 3-24 (206)
272 1z6t_A APAF-1, apoptotic prote 85.4 0.48 1.6E-05 48.7 3.6 41 88-128 146-190 (591)
273 2npi_A Protein CLP1; CLP1-PCF1 85.3 0.36 1.2E-05 48.4 2.5 49 87-136 137-186 (460)
274 1xwi_A SKD1 protein; VPS4B, AA 85.3 0.64 2.2E-05 44.1 4.1 32 92-125 48-79 (322)
275 2xzl_A ATP-dependent helicase 85.3 0.65 2.2E-05 49.9 4.6 36 90-125 376-412 (802)
276 3vqt_A RF-3, peptide chain rel 85.2 2.3 7.8E-05 43.5 8.5 43 313-356 124-166 (548)
277 1ex7_A Guanylate kinase; subst 84.7 0.37 1.3E-05 42.1 2.0 22 91-112 3-24 (186)
278 3b9p_A CG5977-PA, isoform A; A 84.6 0.71 2.4E-05 42.8 4.1 32 91-125 56-87 (297)
279 2fna_A Conserved hypothetical 84.4 0.87 3E-05 42.9 4.7 33 91-126 32-64 (357)
280 2bbw_A Adenylate kinase 4, AK4 84.4 0.62 2.1E-05 42.1 3.5 24 90-113 28-51 (246)
281 3r20_A Cytidylate kinase; stru 84.4 0.6 2E-05 42.3 3.3 34 89-127 9-42 (233)
282 2eyu_A Twitching motility prot 84.2 1.2 4.1E-05 41.0 5.3 38 89-126 25-63 (261)
283 2qp9_X Vacuolar protein sortin 84.2 0.76 2.6E-05 44.2 4.2 32 90-125 86-117 (355)
284 3eie_A Vacuolar protein sortin 84.1 0.79 2.7E-05 43.3 4.2 32 91-125 53-84 (322)
285 1qvr_A CLPB protein; coiled co 84.1 0.6 2.1E-05 50.5 3.8 35 91-125 193-234 (854)
286 3d8b_A Fidgetin-like protein 1 84.1 0.73 2.5E-05 44.3 4.0 32 91-125 119-150 (357)
287 2j41_A Guanylate kinase; GMP, 84.0 0.57 1.9E-05 40.7 2.9 23 91-113 8-30 (207)
288 2j69_A Bacterial dynamin-like 83.9 3.8 0.00013 43.1 9.8 40 313-353 201-241 (695)
289 3pxi_A Negative regulator of g 83.6 0.93 3.2E-05 48.3 4.9 36 91-126 523-558 (758)
290 1iqp_A RFCS; clamp loader, ext 83.5 0.35 1.2E-05 45.3 1.4 34 92-125 49-84 (327)
291 3grp_A 3-oxoacyl-(acyl carrier 83.2 0.85 2.9E-05 41.8 3.9 37 85-126 24-60 (266)
292 3un1_A Probable oxidoreductase 83.2 1.1 3.6E-05 41.0 4.5 43 81-128 21-63 (260)
293 2qmh_A HPR kinase/phosphorylas 83.1 1.2 4.2E-05 39.4 4.7 32 90-127 35-66 (205)
294 2ewv_A Twitching motility prot 83.0 1.3 4.6E-05 42.9 5.4 37 89-125 136-173 (372)
295 1w78_A FOLC bifunctional prote 82.8 1.4 4.8E-05 43.4 5.5 36 87-125 48-83 (422)
296 3cf0_A Transitional endoplasmi 82.6 0.77 2.6E-05 42.9 3.4 31 91-124 51-81 (301)
297 2ga8_A Hypothetical 39.9 kDa p 82.6 1 3.6E-05 43.4 4.4 26 89-114 24-49 (359)
298 3tqf_A HPR(Ser) kinase; transf 82.6 0.81 2.8E-05 39.6 3.2 25 91-119 18-42 (181)
299 1nij_A Hypothetical protein YJ 82.6 0.82 2.8E-05 43.3 3.6 37 90-128 5-41 (318)
300 1jbw_A Folylpolyglutamate synt 82.5 1.4 4.8E-05 43.4 5.5 36 87-125 38-73 (428)
301 1sxj_C Activator 1 40 kDa subu 82.5 0.5 1.7E-05 45.0 2.1 35 92-126 49-83 (340)
302 3e2i_A Thymidine kinase; Zn-bi 82.1 1.6 5.5E-05 39.0 5.1 35 90-124 29-63 (219)
303 3tr0_A Guanylate kinase, GMP k 82.0 0.76 2.6E-05 39.8 2.9 23 91-113 9-31 (205)
304 2ocp_A DGK, deoxyguanosine kin 82.0 0.69 2.3E-05 41.6 2.7 25 90-114 3-27 (241)
305 3pfi_A Holliday junction ATP-d 81.9 1.1 3.9E-05 42.2 4.3 33 92-127 58-90 (338)
306 3ppi_A 3-hydroxyacyl-COA dehyd 81.9 1.2 4E-05 41.0 4.3 37 86-127 28-64 (281)
307 3orf_A Dihydropteridine reduct 81.9 1.3 4.5E-05 40.0 4.6 37 87-128 21-57 (251)
308 1in4_A RUVB, holliday junction 81.9 0.8 2.7E-05 43.6 3.3 23 91-113 53-75 (334)
309 3guy_A Short-chain dehydrogena 81.8 1.1 3.8E-05 39.7 4.1 35 88-127 1-35 (230)
310 3uk6_A RUVB-like 2; hexameric 81.6 0.72 2.5E-05 44.1 2.9 24 91-114 72-95 (368)
311 2c9o_A RUVB-like 1; hexameric 81.5 0.79 2.7E-05 45.7 3.2 33 92-125 66-98 (456)
312 3hdt_A Putative kinase; struct 81.5 0.95 3.3E-05 40.6 3.4 34 89-127 14-47 (223)
313 1sxj_B Activator 1 37 kDa subu 81.4 0.87 3E-05 42.3 3.3 34 92-125 45-80 (323)
314 3k31_A Enoyl-(acyl-carrier-pro 81.4 1.4 4.8E-05 41.0 4.7 35 87-126 29-65 (296)
315 3a00_A Guanylate kinase, GMP k 81.1 0.68 2.3E-05 39.9 2.3 24 91-114 3-26 (186)
316 1vt4_I APAF-1 related killer D 81.0 1.5 5.1E-05 48.4 5.3 42 89-130 150-194 (1221)
317 4b4t_K 26S protease regulatory 81.0 1.3 4.5E-05 43.8 4.6 31 92-125 209-239 (428)
318 2r62_A Cell division protease 80.9 0.55 1.9E-05 42.8 1.6 22 92-113 47-68 (268)
319 1e9r_A Conjugal transfer prote 80.7 1.3 4.5E-05 43.6 4.5 30 96-125 60-89 (437)
320 3nwj_A ATSK2; P loop, shikimat 80.6 0.85 2.9E-05 41.7 2.8 31 91-126 50-80 (250)
321 3jvv_A Twitching mobility prot 80.4 2 6.8E-05 41.4 5.5 35 90-124 124-159 (356)
322 1sxj_D Activator 1 41 kDa subu 80.4 1 3.4E-05 42.6 3.4 33 92-124 61-96 (353)
323 1q3t_A Cytidylate kinase; nucl 80.1 1.2 4E-05 39.9 3.6 32 91-127 18-49 (236)
324 3pxi_A Negative regulator of g 80.1 1.2 4E-05 47.5 4.1 24 92-115 204-227 (758)
325 1fjh_A 3alpha-hydroxysteroid d 80.0 1.6 5.5E-05 39.2 4.5 36 88-128 1-36 (257)
326 2chq_A Replication factor C sm 79.9 1.2 4.2E-05 41.2 3.8 34 92-125 41-76 (319)
327 2qen_A Walker-type ATPase; unk 79.9 1.2 4.2E-05 41.7 3.8 32 90-126 32-63 (350)
328 1w4r_A Thymidine kinase; type 79.9 2.3 7.8E-05 37.3 5.2 37 89-125 20-56 (195)
329 3l6e_A Oxidoreductase, short-c 79.6 1.6 5.4E-05 39.1 4.3 35 88-127 3-37 (235)
330 1qvr_A CLPB protein; coiled co 79.5 1.5 5E-05 47.5 4.7 38 90-127 589-626 (854)
331 3op4_A 3-oxoacyl-[acyl-carrier 79.3 1.4 4.8E-05 39.7 3.9 36 87-127 8-43 (248)
332 2zan_A Vacuolar protein sortin 79.3 1.2 4E-05 44.4 3.5 32 92-125 170-201 (444)
333 1o5z_A Folylpolyglutamate synt 79.2 1.8 6.3E-05 42.9 5.0 36 87-125 51-86 (442)
334 1jr3_A DNA polymerase III subu 79.2 1.2 4E-05 42.5 3.5 26 90-115 39-64 (373)
335 3fdi_A Uncharacterized protein 79.2 0.89 3.1E-05 40.0 2.4 33 89-126 6-38 (201)
336 3ged_A Short-chain dehydrogena 79.1 1.6 5.4E-05 39.8 4.2 34 89-127 3-36 (247)
337 3p19_A BFPVVD8, putative blue 79.1 1.9 6.5E-05 39.4 4.8 35 88-127 16-50 (266)
338 2vos_A Folylpolyglutamate synt 79.0 2.3 7.7E-05 42.8 5.6 36 87-125 63-98 (487)
339 1p9r_A General secretion pathw 79.0 2 6.9E-05 42.3 5.2 40 88-127 166-205 (418)
340 3ijr_A Oxidoreductase, short c 78.9 3.4 0.00012 38.2 6.5 37 87-128 46-82 (291)
341 3pvs_A Replication-associated 78.9 0.99 3.4E-05 45.0 2.9 33 81-113 42-74 (447)
342 2i3b_A HCR-ntpase, human cance 78.8 1.4 4.7E-05 38.4 3.5 25 93-117 5-29 (189)
343 1ixz_A ATP-dependent metallopr 78.8 1 3.4E-05 40.7 2.7 22 92-113 52-73 (254)
344 1ye8_A Protein THEP1, hypothet 78.7 1.4 4.8E-05 37.9 3.5 22 93-114 4-25 (178)
345 3gem_A Short chain dehydrogena 78.6 1.6 5.3E-05 39.9 4.0 37 87-128 26-62 (260)
346 1g41_A Heat shock protein HSLU 78.6 1.6 5.6E-05 43.4 4.3 31 92-125 53-83 (444)
347 2h92_A Cytidylate kinase; ross 78.6 0.89 3E-05 40.0 2.2 32 91-127 5-36 (219)
348 4e22_A Cytidylate kinase; P-lo 78.5 1.1 3.9E-05 40.6 3.0 23 91-113 29-51 (252)
349 2dyk_A GTP-binding protein; GT 78.5 1.3 4.5E-05 36.1 3.2 40 314-354 81-120 (161)
350 3h7a_A Short chain dehydrogena 78.5 1.8 6.1E-05 39.2 4.3 37 87-128 6-42 (252)
351 3vtz_A Glucose 1-dehydrogenase 78.4 1.6 5.4E-05 40.0 3.9 37 87-128 13-49 (269)
352 3nrs_A Dihydrofolate:folylpoly 78.4 2.5 8.5E-05 41.9 5.6 36 87-125 51-86 (437)
353 3co5_A Putative two-component 78.3 0.41 1.4E-05 39.5 -0.1 21 92-112 30-50 (143)
354 4b4t_L 26S protease subunit RP 78.3 1.8 6.1E-05 43.0 4.5 34 88-125 215-248 (437)
355 3b6e_A Interferon-induced heli 78.2 1.6 5.6E-05 37.8 3.8 33 92-124 51-89 (216)
356 1dhr_A Dihydropteridine reduct 78.0 2 7E-05 38.3 4.5 37 87-128 6-42 (241)
357 3tpc_A Short chain alcohol deh 77.9 2.2 7.4E-05 38.6 4.7 37 87-128 6-42 (257)
358 3l77_A Short-chain alcohol deh 77.8 2 6.9E-05 38.1 4.4 35 88-127 2-36 (235)
359 3tzq_B Short-chain type dehydr 77.7 2.2 7.4E-05 39.0 4.7 37 87-128 10-46 (271)
360 3f1l_A Uncharacterized oxidore 77.7 2 6.8E-05 38.8 4.4 36 87-127 11-46 (252)
361 3gvc_A Oxidoreductase, probabl 77.7 1.7 5.8E-05 40.0 3.9 36 87-127 28-63 (277)
362 3tmk_A Thymidylate kinase; pho 77.6 1.4 4.8E-05 39.3 3.2 32 90-124 6-37 (216)
363 3i1j_A Oxidoreductase, short c 77.5 1.7 5.8E-05 38.9 3.8 36 87-127 13-48 (247)
364 3rwb_A TPLDH, pyridoxal 4-dehy 77.5 1.8 6.2E-05 39.0 4.0 36 87-127 5-40 (247)
365 1ooe_A Dihydropteridine reduct 77.4 2 6.7E-05 38.2 4.2 36 88-128 3-38 (236)
366 4ehx_A Tetraacyldisaccharide 4 77.4 1.4 4.8E-05 41.8 3.3 35 89-125 37-72 (315)
367 3uf0_A Short-chain dehydrogena 77.3 1.9 6.5E-05 39.6 4.2 33 87-124 30-62 (273)
368 3sx2_A Putative 3-ketoacyl-(ac 77.3 2 6.9E-05 39.2 4.4 36 87-127 12-47 (278)
369 1s96_A Guanylate kinase, GMP k 77.3 1.3 4.5E-05 39.5 2.9 24 90-113 17-40 (219)
370 2wsb_A Galactitol dehydrogenas 77.2 2.4 8.1E-05 37.9 4.7 36 87-127 10-45 (254)
371 3vfd_A Spastin; ATPase, microt 77.1 1.8 6.3E-05 41.9 4.2 32 91-125 150-181 (389)
372 2ekp_A 2-deoxy-D-gluconate 3-d 77.1 2.1 7.2E-05 38.2 4.3 36 88-128 2-37 (239)
373 2dtx_A Glucose 1-dehydrogenase 77.1 2.5 8.4E-05 38.5 4.9 36 88-128 8-43 (264)
374 3uxy_A Short-chain dehydrogena 77.1 1.5 5E-05 40.2 3.3 37 87-128 27-63 (266)
375 3v8b_A Putative dehydrogenase, 77.1 2.1 7.2E-05 39.5 4.4 38 85-127 25-62 (283)
376 4eso_A Putative oxidoreductase 76.9 2.1 7.2E-05 38.8 4.3 36 87-127 7-42 (255)
377 2d1y_A Hypothetical protein TT 76.8 2.4 8.1E-05 38.3 4.7 36 88-128 6-41 (256)
378 3r1i_A Short-chain type dehydr 76.8 2.9 9.9E-05 38.4 5.3 36 87-127 31-66 (276)
379 2fwm_X 2,3-dihydro-2,3-dihydro 76.7 2.4 8.3E-05 38.1 4.7 36 88-128 7-42 (250)
380 3qiv_A Short-chain dehydrogena 76.6 2.2 7.4E-05 38.3 4.3 36 87-127 8-43 (253)
381 4e6p_A Probable sorbitol dehyd 76.6 2.2 7.6E-05 38.6 4.4 36 87-127 7-42 (259)
382 3t7c_A Carveol dehydrogenase; 76.6 2.1 7.1E-05 39.8 4.3 37 87-128 27-63 (299)
383 4dqx_A Probable oxidoreductase 76.5 2.1 7.3E-05 39.3 4.3 36 87-127 26-61 (277)
384 2ae2_A Protein (tropinone redu 76.5 2.3 7.7E-05 38.5 4.4 36 87-127 8-43 (260)
385 2x8a_A Nuclear valosin-contain 76.4 1.3 4.4E-05 40.9 2.7 31 92-125 47-77 (274)
386 1r6b_X CLPA protein; AAA+, N-t 76.4 2.5 8.6E-05 44.8 5.3 45 91-138 490-537 (758)
387 2dkn_A 3-alpha-hydroxysteroid 76.4 2.3 7.9E-05 37.8 4.4 36 88-128 1-36 (255)
388 1r6b_X CLPA protein; AAA+, N-t 76.2 2.2 7.5E-05 45.3 4.8 29 88-116 206-234 (758)
389 1e8c_A UDP-N-acetylmuramoylala 76.2 3.2 0.00011 41.8 5.8 36 87-125 107-142 (498)
390 2ew8_A (S)-1-phenylethanol deh 76.1 2.4 8.2E-05 38.1 4.5 35 88-127 7-41 (249)
391 3lyl_A 3-oxoacyl-(acyl-carrier 76.1 2 6.7E-05 38.5 3.8 35 88-127 5-39 (247)
392 3svt_A Short-chain type dehydr 76.0 2.2 7.7E-05 39.1 4.3 36 87-127 10-45 (281)
393 3nyw_A Putative oxidoreductase 76.0 1.9 6.4E-05 39.0 3.7 36 87-127 6-41 (250)
394 1g8p_A Magnesium-chelatase 38 75.9 1.1 3.7E-05 42.3 2.1 23 92-114 48-70 (350)
395 1zmt_A Haloalcohol dehalogenas 75.9 1.4 4.9E-05 39.8 2.9 36 88-128 1-36 (254)
396 3o38_A Short chain dehydrogena 75.8 2.8 9.4E-05 38.0 4.8 36 87-127 21-57 (266)
397 4b79_A PA4098, probable short- 75.7 2.7 9.3E-05 38.1 4.7 37 87-128 10-46 (242)
398 3gdg_A Probable NADP-dependent 75.6 2.8 9.6E-05 37.9 4.8 41 83-128 15-57 (267)
399 1iy2_A ATP-dependent metallopr 75.6 1.4 4.7E-05 40.5 2.7 22 92-113 76-97 (278)
400 4imr_A 3-oxoacyl-(acyl-carrier 75.6 2.8 9.4E-05 38.5 4.8 38 86-128 31-68 (275)
401 3rih_A Short chain dehydrogena 75.5 2 6.8E-05 40.0 3.8 37 87-128 40-76 (293)
402 3pk0_A Short-chain dehydrogena 75.4 2 7E-05 39.0 3.8 36 87-127 9-44 (262)
403 3pxx_A Carveol dehydrogenase; 75.4 2.4 8.1E-05 38.8 4.3 36 87-127 9-44 (287)
404 1lvg_A Guanylate kinase, GMP k 75.4 1.5 5E-05 38.3 2.7 23 91-113 6-28 (198)
405 1p5z_B DCK, deoxycytidine kina 75.3 0.64 2.2E-05 42.5 0.3 25 89-113 24-48 (263)
406 3m6a_A ATP-dependent protease 75.3 2.5 8.7E-05 43.1 4.8 32 91-125 110-141 (543)
407 1zem_A Xylitol dehydrogenase; 75.1 2.5 8.5E-05 38.3 4.3 35 88-127 7-41 (262)
408 4b4t_J 26S protease regulatory 75.1 1.7 5.8E-05 42.7 3.3 33 89-125 183-215 (405)
409 3ak4_A NADH-dependent quinucli 75.0 2.6 8.9E-05 38.1 4.4 36 87-127 11-46 (263)
410 4dyv_A Short-chain dehydrogena 74.9 1.9 6.5E-05 39.6 3.4 36 87-127 27-62 (272)
411 3dii_A Short-chain dehydrogena 74.9 2.5 8.7E-05 37.9 4.3 35 88-127 2-36 (247)
412 2rhc_B Actinorhodin polyketide 74.9 3.2 0.00011 38.0 5.0 36 87-127 21-56 (277)
413 3e03_A Short chain dehydrogena 74.9 2.7 9.3E-05 38.4 4.5 37 87-128 5-41 (274)
414 1dek_A Deoxynucleoside monopho 74.9 1.8 6.2E-05 39.3 3.2 27 91-120 3-29 (241)
415 3o26_A Salutaridine reductase; 74.8 2.1 7.1E-05 39.5 3.7 37 87-128 11-47 (311)
416 1o5i_A 3-oxoacyl-(acyl carrier 74.7 2.7 9.2E-05 37.8 4.4 36 87-127 18-53 (249)
417 3sfz_A APAF-1, apoptotic pepti 74.7 1.5 5E-05 48.9 3.1 40 88-127 146-189 (1249)
418 2wtz_A UDP-N-acetylmuramoyl-L- 74.6 3.3 0.00011 42.1 5.5 36 87-125 145-180 (535)
419 1e2k_A Thymidine kinase; trans 74.6 1.8 6.1E-05 41.3 3.2 28 90-117 5-32 (331)
420 1vl8_A Gluconate 5-dehydrogena 74.6 2.6 8.8E-05 38.4 4.3 36 87-127 20-55 (267)
421 1hdc_A 3-alpha, 20 beta-hydrox 74.6 2.6 8.9E-05 38.0 4.3 35 88-127 5-39 (254)
422 3ucx_A Short chain dehydrogena 74.6 3 0.0001 37.8 4.7 36 87-127 10-45 (264)
423 1of1_A Thymidine kinase; trans 74.5 2.1 7.3E-05 41.5 3.8 29 89-117 49-77 (376)
424 2vp4_A Deoxynucleoside kinase; 74.5 1.7 5.9E-05 38.7 3.0 33 90-126 21-53 (230)
425 2pd4_A Enoyl-[acyl-carrier-pro 74.4 3 0.0001 38.0 4.7 36 88-128 6-43 (275)
426 2pd6_A Estradiol 17-beta-dehyd 74.3 2.7 9.2E-05 37.8 4.3 35 88-127 7-41 (264)
427 4b4t_M 26S protease regulatory 74.3 1.8 6.1E-05 43.0 3.2 34 88-125 215-248 (434)
428 3v2g_A 3-oxoacyl-[acyl-carrier 74.3 2.7 9.2E-05 38.5 4.3 36 87-127 30-65 (271)
429 1sxj_E Activator 1 40 kDa subu 74.3 1.5 5.3E-05 41.5 2.7 23 92-114 39-61 (354)
430 2jah_A Clavulanic acid dehydro 74.2 2.8 9.7E-05 37.6 4.4 35 88-127 7-41 (247)
431 4egf_A L-xylulose reductase; s 74.1 2.7 9.1E-05 38.3 4.2 36 87-127 19-54 (266)
432 1ae1_A Tropinone reductase-I; 74.1 2.8 9.5E-05 38.3 4.4 35 88-127 21-55 (273)
433 2bgk_A Rhizome secoisolaricire 74.1 2.8 9.5E-05 38.0 4.4 35 88-127 16-50 (278)
434 3ai3_A NADPH-sorbose reductase 74.1 2.8 9.6E-05 37.9 4.4 35 88-127 7-41 (263)
435 3uve_A Carveol dehydrogenase ( 74.1 2.8 9.4E-05 38.5 4.4 36 87-127 10-45 (286)
436 3kta_A Chromosome segregation 74.1 1.6 5.5E-05 37.0 2.6 24 91-114 28-51 (182)
437 2nm0_A Probable 3-oxacyl-(acyl 74.0 3.2 0.00011 37.5 4.7 36 88-128 21-56 (253)
438 1rif_A DAR protein, DNA helica 74.0 2.3 7.8E-05 39.0 3.8 32 93-124 132-164 (282)
439 3sc4_A Short chain dehydrogena 73.9 2.8 9.7E-05 38.6 4.4 37 87-128 8-44 (285)
440 3tfo_A Putative 3-oxoacyl-(acy 73.8 2.4 8.2E-05 38.8 3.8 35 88-127 4-38 (264)
441 1a5t_A Delta prime, HOLB; zinc 73.8 2.1 7.1E-05 40.6 3.5 26 90-115 25-50 (334)
442 3eag_A UDP-N-acetylmuramate:L- 73.8 3.4 0.00012 39.1 5.0 33 87-122 107-139 (326)
443 2o23_A HADH2 protein; HSD17B10 73.8 3.1 0.00011 37.4 4.6 36 88-128 12-47 (265)
444 1yde_A Retinal dehydrogenase/r 73.8 2.8 9.6E-05 38.3 4.3 35 88-127 9-43 (270)
445 2qq5_A DHRS1, dehydrogenase/re 73.8 2.4 8.2E-05 38.3 3.8 35 88-127 5-39 (260)
446 1iy8_A Levodione reductase; ox 73.7 2.8 9.6E-05 38.0 4.3 35 88-127 13-47 (267)
447 2fz4_A DNA repair protein RAD2 73.7 2.3 7.8E-05 38.2 3.6 30 92-124 111-140 (237)
448 2z1n_A Dehydrogenase; reductas 73.7 2.8 9.7E-05 37.8 4.3 35 88-127 7-41 (260)
449 2v9p_A Replication protein E1; 73.6 2.8 9.5E-05 39.5 4.3 26 87-113 125-150 (305)
450 1svi_A GTP-binding protein YSX 73.6 2.2 7.4E-05 36.3 3.3 40 314-354 107-146 (195)
451 3ic5_A Putative saccharopine d 73.5 2.3 7.9E-05 32.8 3.2 34 88-127 5-39 (118)
452 3f9i_A 3-oxoacyl-[acyl-carrier 73.5 2.3 7.8E-05 38.1 3.6 36 87-127 13-48 (249)
453 1nff_A Putative oxidoreductase 73.4 2.9 9.9E-05 37.9 4.3 35 88-127 7-41 (260)
454 2zat_A Dehydrogenase/reductase 73.4 2.5 8.5E-05 38.2 3.8 35 88-127 14-48 (260)
455 3lfu_A DNA helicase II; SF1 he 73.3 2.4 8.1E-05 43.9 4.1 33 94-126 27-63 (647)
456 1xg5_A ARPG836; short chain de 73.2 3 0.0001 38.1 4.4 36 87-127 31-66 (279)
457 3awd_A GOX2181, putative polyo 73.1 3 0.0001 37.4 4.3 36 87-127 12-47 (260)
458 2b4q_A Rhamnolipids biosynthes 73.1 2.8 9.6E-05 38.4 4.1 36 87-127 28-63 (276)
459 3lnc_A Guanylate kinase, GMP k 73.0 1.5 5.2E-05 38.9 2.2 23 91-113 29-52 (231)
460 1yxm_A Pecra, peroxisomal tran 73.0 2.9 0.0001 38.6 4.3 35 88-127 18-52 (303)
461 4ibo_A Gluconate dehydrogenase 72.9 2.1 7.3E-05 39.2 3.3 35 87-126 25-59 (271)
462 3zv4_A CIS-2,3-dihydrobiphenyl 72.9 3 0.0001 38.3 4.3 36 87-127 4-39 (281)
463 3rkr_A Short chain oxidoreduct 72.8 2.7 9.2E-05 38.1 3.9 36 87-127 28-63 (262)
464 4gp7_A Metallophosphoesterase; 72.8 1.6 5.5E-05 37.0 2.2 19 90-108 10-28 (171)
465 2ehd_A Oxidoreductase, oxidore 72.7 2.7 9.2E-05 37.1 3.8 35 88-127 5-39 (234)
466 3ftp_A 3-oxoacyl-[acyl-carrier 72.7 2.4 8.4E-05 38.7 3.6 36 87-127 27-62 (270)
467 1h5q_A NADP-dependent mannitol 72.7 3 0.0001 37.5 4.2 36 88-128 14-49 (265)
468 3tsc_A Putative oxidoreductase 72.6 2.9 0.0001 38.2 4.2 36 87-127 10-45 (277)
469 2q2v_A Beta-D-hydroxybutyrate 72.6 2.7 9.3E-05 37.8 3.9 36 88-128 4-39 (255)
470 1x1t_A D(-)-3-hydroxybutyrate 72.5 2.4 8.1E-05 38.4 3.5 35 88-127 4-38 (260)
471 1cyd_A Carbonyl reductase; sho 72.5 3.3 0.00011 36.7 4.4 35 88-127 7-41 (244)
472 4fc7_A Peroxisomal 2,4-dienoyl 72.5 2.9 9.9E-05 38.3 4.1 36 87-127 26-61 (277)
473 3m1a_A Putative dehydrogenase; 72.5 2.5 8.4E-05 38.7 3.6 37 87-128 4-40 (281)
474 1uay_A Type II 3-hydroxyacyl-C 72.5 2.7 9.3E-05 37.1 3.8 36 88-128 2-37 (242)
475 2cfc_A 2-(R)-hydroxypropyl-COM 72.4 3.1 0.00011 37.0 4.2 35 88-127 2-36 (250)
476 4e3z_A Putative oxidoreductase 72.4 2.5 8.5E-05 38.5 3.6 34 87-125 25-58 (272)
477 4b4t_H 26S protease regulatory 72.3 2.1 7E-05 42.8 3.1 34 88-125 243-276 (467)
478 2gdz_A NAD+-dependent 15-hydro 72.3 3.2 0.00011 37.6 4.3 35 88-127 7-41 (267)
479 1yb1_A 17-beta-hydroxysteroid 72.3 3.2 0.00011 37.8 4.3 35 88-127 31-65 (272)
480 3hu3_A Transitional endoplasmi 72.2 2.2 7.4E-05 43.1 3.3 31 92-125 241-271 (489)
481 3ice_A Transcription terminati 72.2 3 0.0001 40.8 4.2 31 87-118 173-203 (422)
482 3rd5_A Mypaa.01249.C; ssgcid, 72.2 4 0.00014 37.5 5.0 37 87-128 15-51 (291)
483 1fmc_A 7 alpha-hydroxysteroid 72.1 3 0.0001 37.2 4.0 36 87-127 10-45 (255)
484 3s55_A Putative short-chain de 71.9 3.3 0.00011 37.8 4.4 37 87-128 9-45 (281)
485 3afn_B Carbonyl reductase; alp 71.9 3 0.0001 37.2 4.0 34 88-126 7-40 (258)
486 3gmt_A Adenylate kinase; ssgci 71.9 2.7 9.3E-05 37.9 3.6 24 89-113 9-32 (230)
487 3tjr_A Short chain dehydrogena 71.8 3.2 0.00011 38.5 4.3 37 87-128 30-66 (301)
488 1w6u_A 2,4-dienoyl-COA reducta 71.8 3.2 0.00011 38.2 4.3 35 88-127 26-60 (302)
489 3oec_A Carveol dehydrogenase ( 71.7 2.8 9.7E-05 39.3 3.9 37 87-128 45-81 (317)
490 2gno_A DNA polymerase III, gam 71.7 5.8 0.0002 37.2 6.0 38 89-126 18-58 (305)
491 1znw_A Guanylate kinase, GMP k 71.7 2.2 7.7E-05 37.2 3.0 23 91-113 22-44 (207)
492 1g0o_A Trihydroxynaphthalene r 71.6 2.8 9.5E-05 38.5 3.7 36 87-127 28-63 (283)
493 3lf2_A Short chain oxidoreduct 71.6 3.4 0.00012 37.5 4.3 36 87-127 7-42 (265)
494 1geg_A Acetoin reductase; SDR 71.5 3.3 0.00011 37.3 4.2 34 89-127 3-36 (256)
495 1svm_A Large T antigen; AAA+ f 71.4 2.6 8.7E-05 41.0 3.5 25 89-113 169-193 (377)
496 4i1u_A Dephospho-COA kinase; s 71.4 2 6.7E-05 38.2 2.5 33 88-127 9-41 (210)
497 1wma_A Carbonyl reductase [NAD 71.4 2.9 9.8E-05 37.6 3.7 36 87-127 3-39 (276)
498 1qsg_A Enoyl-[acyl-carrier-pro 71.3 3.7 0.00013 37.2 4.5 35 88-127 9-45 (265)
499 3sju_A Keto reductase; short-c 71.3 3.3 0.00011 38.0 4.2 35 88-127 24-58 (279)
500 3e8x_A Putative NAD-dependent 71.1 3.3 0.00011 36.6 4.0 37 87-128 20-56 (236)
No 1
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=100.00 E-value=2.9e-51 Score=401.08 Aligned_cols=313 Identities=33% Similarity=0.574 Sum_probs=229.3
Q ss_pred CchhhhhcCCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccccCCccccccCCCCCeeee
Q 015096 78 SGFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFAL 157 (413)
Q Consensus 78 ~~~~~~~~~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~~~ 157 (413)
++++.++.+.+++|+|+||||||||||+|+|||.++|+.|+||+|||+|++++++.+||.+. +..+..+.+.. ++++.
T Consensus 5 ~~l~~~l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~~l~~~l~~~~-~~~~~~v~~~~-~L~~~ 82 (334)
T 3iqw_A 5 PTLQSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAFSQKF-GKEARLVEGFD-NLYAM 82 (334)
T ss_dssp SSSHHHHHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSCHHHHHHTSCC-CSSCEECTTCS-SEEEE
T ss_pred ccHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCCChhHHhcccc-CCCceeecCCC-Cceee
Confidence 45666777788899999999999999999999999999999999999999999999999876 45566665544 49999
Q ss_pred ccChHHHHHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEE
Q 015096 158 EINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIV 237 (413)
Q Consensus 158 ~~d~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IV 237 (413)
++|++..+.++........ .. ...++. +. ..+....||++|.+.+.++.+++. +.+|||||
T Consensus 83 ~id~~~~~~~~~~~~~~~~----~~--~~~~l~-~~---------~~~~~~~Pg~~e~~~~~~~~~~~~---~~~yD~VI 143 (334)
T 3iqw_A 83 EIDPNGSMQDLLAGQTGDG----DA--GMGGVG-VM---------QDLAYAIPGIDEAMSFAEVLKQVN---SLSYETIV 143 (334)
T ss_dssp ECCC------------------------------------------------CCHHHHHHHHHHHHHHH---TSSCSEEE
T ss_pred ecCHHHHHHHHHHHhhccc----cc--ccccch-hh---------HHhhcCCCCHHHHHHHHHHHHHHH---hCCCCEEE
Confidence 9999988877654221110 00 000110 00 111133699999999999999886 35799999
Q ss_pred EcCCCChhHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC---ccchhhHHHHHHHHHHHHHHHHHHhcCCCCc
Q 015096 238 FDTAPTGHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQ---EQNRQGASDKLERLRERMVKVRELFRDTDST 314 (413)
Q Consensus 238 iDtpP~~~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t 314 (413)
|||||+||++++|.+|+.+.+|++++++++.++..+.+.+.+.+|. ....+++++.++.++++++++++.|+||..|
T Consensus 144 iDtpPtg~tLrlL~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t 223 (334)
T 3iqw_A 144 FDTAPTGHTLRFLQFPTVLEKALAKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLT 223 (334)
T ss_dssp EECCCHHHHHHHHTHHHHC-----------------------------------CCHHHHHHHHHHHHHHHHHHTCTTTE
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhCCCCe
Confidence 9999999999999999999999999999999998888877777765 2345788999999999999999999999999
Q ss_pred eEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEeccc-CCCCCchHHHHHHHHHHHHHHHHhHhcCCCCC-CceEEec
Q 015096 315 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQII-PPSASDCKFCAMKRKDQMRALEMIKSDSELSS-LMLIEAP 392 (413)
Q Consensus 315 ~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~-p~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~-~~~~~~P 392 (413)
++++|++|+.+++.+++|+++.|++.|+++.|+|+|++. |.....|++|..+.+.|.++|++|++. |.+ .+++.+|
T Consensus 224 ~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~--~~~~~~~~~~p 301 (334)
T 3iqw_A 224 TFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEEL--YDEEFNVVKMP 301 (334)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHH--HTTTSEEEEEE
T ss_pred eEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHh--ccCCCCEEEec
Confidence 999999999999999999999999999999999999998 554568999999999999999999984 567 8999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhC
Q 015096 393 LVDVEIRGVPALRFMGDIIWK 413 (413)
Q Consensus 393 ~~~~e~~g~~~L~~l~~~~~~ 413 (413)
++..||+|+++|+.|++.+|+
T Consensus 302 l~~~e~~G~~~L~~~~~~l~~ 322 (334)
T 3iqw_A 302 LLVEEVRGKERLEKFSEMLIK 322 (334)
T ss_dssp CCSSCCCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHcC
Confidence 999999999999999999985
No 2
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=100.00 E-value=8.9e-50 Score=392.48 Aligned_cols=312 Identities=31% Similarity=0.529 Sum_probs=193.5
Q ss_pred CchhhhhcCCCcEEEEEeCCCcchhhHHHHHHHHHHH--HCCCCEEEEecCCCCCcchHhhccccCCccccccCCCCCee
Q 015096 78 SGFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFA--NNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLF 155 (413)
Q Consensus 78 ~~~~~~~~~~~~~i~v~sgKGGvGKTTvAa~LA~~lA--~~G~rVLlvD~D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~ 155 (413)
+++..+++...++|+|++|||||||||+|+|||.++| +.|+||+|||+|++++++.+||.+. +..+..+.+.+ +++
T Consensus 7 ~~L~~~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~l~~~~~~~~-~~~~~~v~~~~-~L~ 84 (348)
T 3io3_A 7 PTLESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSDAFCQKF-GKDARKVEGLP-NLS 84 (348)
T ss_dssp SSSHHHHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCHHHHHHTSCC-CSSCEEETTEE-EEE
T ss_pred hhHHHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCChHHHhcccc-CCCceeccCCC-Cce
Confidence 4566777777788999999999999999999999999 8999999999999999999999886 56666765444 399
Q ss_pred eeccChHHHHHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcc------
Q 015096 156 ALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQE------ 229 (413)
Q Consensus 156 ~~~~d~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~------ 229 (413)
+.++|++..+.++......... ..+.++..+.. ++ ....||++|.+.+.++.+++....
T Consensus 85 ~~~id~~~~~~~~~~~~~~~~~------~~~~~l~~~~~--------~~-~~~~Pg~~e~~~~~~~~~~l~~~~~~~~~~ 149 (348)
T 3io3_A 85 CMEIDPEAAMSDLQQQASQYNN------DPNDPLKSMMS--------DM-TGSIPGIDEALSFMEVLKHIKNQKVLEGED 149 (348)
T ss_dssp EEECCC--------------------------------------------------------------------------
T ss_pred EEeeCHHHHHHHHHHHHHhhcc------cccccHhHHhH--------Hh-hcCCCCHHHHHHHHHHHHHHHhcccccccc
Confidence 9999999988877653221000 00001111111 11 133699999999999998887531
Q ss_pred ---cCCccEEEEcCCCChhHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHH
Q 015096 230 ---YSMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRE 306 (413)
Q Consensus 230 ---~~~yD~IViDtpP~~~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 306 (413)
..+||||||||||++|++++|.+|+.+.+|++++++++.++.... .+.+.+| .+++++.+++++++++++++
T Consensus 150 ~~~~~~yD~VIiDtpPtg~tLrlL~lP~~~~~~l~~~~~~~~~~~p~~-~~~~~~~----~~~~~~~l~~~~~~~~~~~~ 224 (348)
T 3io3_A 150 NSNAISYKTIIFDTAPTGHTLRFLQLPSTLEKLLSKFKDLSGKLGPML-SMMGGGQ----QQDIFEKLNEVQKNVSEVNE 224 (348)
T ss_dssp ------CCEEEEECSSHHHHHHHTC--------------------------------------------------CHHHH
T ss_pred ccccCCCCEEEEcCCCchHHHHHHhhHHHHHHHHHHHHHHHHhhhHHH-HhcccCc----hHHHHHHHHHHHHHHHHHHH
Confidence 237999999999999999999999999999999999988876655 4444443 57888999999999999999
Q ss_pred HhcCCCCceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCCC-C-CchHHHHHHHHHHHHHHHHhHhcCCCC
Q 015096 307 LFRDTDSTEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPS-A-SDCKFCAMKRKDQMRALEMIKSDSELS 384 (413)
Q Consensus 307 ~l~d~~~t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~~-~-~~~~~~~~~~~~q~~~l~~i~~~~~~~ 384 (413)
.|+||..|++++|++|+.+++.+++++++.|+++|+++.|+|+||+.+.. . ..|++|..+.+.|.++|++|++. |.
T Consensus 225 ~L~dp~~t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~--~~ 302 (348)
T 3io3_A 225 QFTNPELTTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGEL--YE 302 (348)
T ss_dssp HHTCTTTEEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHH--TT
T ss_pred HHhCcCceEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHH--cc
Confidence 99999999999999999999999999999999999999999999999875 3 37999999999999999999984 57
Q ss_pred CCceEEecCCCCCCCCHHHHHHHHHHhhC
Q 015096 385 SLMLIEAPLVDVEIRGVPALRFMGDIIWK 413 (413)
Q Consensus 385 ~~~~~~~P~~~~e~~g~~~L~~l~~~~~~ 413 (413)
+.+++.+|++..||+|+++|+.|++.||+
T Consensus 303 ~~~~~~~pl~~~e~~G~~~L~~~~~~l~~ 331 (348)
T 3io3_A 303 DYHLVKMPLLGCEIRGVENLKKFSKFLLK 331 (348)
T ss_dssp TSEEEEEECCSSCCCSHHHHHHHHHHHHS
T ss_pred CCCEEEecCCCCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999984
No 3
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=100.00 E-value=2.1e-47 Score=377.00 Aligned_cols=307 Identities=36% Similarity=0.661 Sum_probs=259.7
Q ss_pred CCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccccCCccccccCCCCCeeeeccChHHHH
Q 015096 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAR 165 (413)
Q Consensus 86 ~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~~ 165 (413)
..+++|+|+||||||||||+|+|||.++|++|+||+|||+|++++++.+||.+. +..+..+.|..+ +++.++|++..+
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~~l~~~l~~~~-~~~~~~v~g~~~-l~~~~id~~~~~ 100 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEF-GHEPTKVKGYDN-LYVVEIDPQKAM 100 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTTCHHHHHHCSCC-CSSCEECTTCSS-EEEEECCHHHHH
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCCCC-CcCccccccccc-eeeeccCHHHHH
Confidence 578999999999999999999999999999999999999999999999999986 566677765444 999999999988
Q ss_pred HHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCChh
Q 015096 166 EEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGH 245 (413)
Q Consensus 166 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~~ 245 (413)
.++......... ..+..+ ..+...+..+ ...||.+|.+.+.++.+++. ..+||||||||||++|
T Consensus 101 ~~~~~~~~~~~~---~~l~~~---~~~~~~l~~~-------~~~pg~~e~~~~~~l~~~~~---~~~yD~VIiDtpPt~~ 164 (349)
T 3ug7_A 101 EEYKEKLKAQIE---ENPFLG---EMLEDQLEMA-------ALSPGTDESAAFDVFLKYMD---SNEFDVVIFDTAPTGH 164 (349)
T ss_dssp HHHHHHHHHHGG---GCHHHH---HHHHHHHHHH-------HHSTTHHHHHHHHHHHHHHH---CCSCSEEEECSCCCTT
T ss_pred HHHHHHHHHHHH---Hhcccc---hhhHHHHHHh-------ccCCCHHHHHHHHHHHHHHH---hCCCCEEEECCCCChH
Confidence 877653322111 111111 1122222111 12899999999999999986 4579999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC---c--cchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEE
Q 015096 246 TLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQ---E--QNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVT 320 (413)
Q Consensus 246 ~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~---~--~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt 320 (413)
++++|.+|+.+.+|++++++++.+.....+.+..+++. . ...+.+++.++++++++++++++|+||..|++++|+
T Consensus 165 tlrlL~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~ 244 (349)
T 3ug7_A 165 TLRFLGMPEVMDKYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVV 244 (349)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEE
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 99999999999999999999999988887777665432 1 235789999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCCCCCchHHHHHHHHHHHHHHHHhHhcCCCCCCceEEecCCCCCCCC
Q 015096 321 IPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRG 400 (413)
Q Consensus 321 ~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~~~~P~~~~e~~g 400 (413)
+|+.+++.+++++++.|++.|+++.|+|+|++.+.. ..|++|..+.+.|.++++.+.+ .+...++..+|+.+.||+|
T Consensus 245 ~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~-~~~~~~~~~~~~~~~~l~~i~~--~~~~~~l~~iPl~~~e~~g 321 (349)
T 3ug7_A 245 IPEEMSILESERAMKALQKYGIPIDAVIVNQLIPED-VQCDFCRARRELQLKRLEMIKE--KFGDKVIAYVPLLRTEAKG 321 (349)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSC-CCSHHHHHHHHHHHHHHHHHHH--HSTTSEEEEEECCSSCSCS
T ss_pred CCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCcccc-CCCchHHHHHHHHHHHHHHHHH--HcCCCcEEEecCCCCCCCC
Confidence 999999999999999999999999999999999874 3699999999999999999998 4678899999999999999
Q ss_pred HHHHHHHHHHhhC
Q 015096 401 VPALRFMGDIIWK 413 (413)
Q Consensus 401 ~~~L~~l~~~~~~ 413 (413)
+++|+.+++.||.
T Consensus 322 ~~~L~~~~~~l~~ 334 (349)
T 3ug7_A 322 IETLKQIAKILYG 334 (349)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999874
No 4
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=4.3e-47 Score=371.32 Aligned_cols=304 Identities=37% Similarity=0.657 Sum_probs=252.6
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccccCCccccccCCCCCeeeeccChHHHHHH
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREE 167 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~~~~ 167 (413)
+++|+|+||||||||||+|+|||.++|++|+||++||+|++++++.+||.+. +..+..+.. +++..++|++..+.+
T Consensus 13 m~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~~l~~~l~~~~-~~~~~~v~~---~l~~~~~d~~~~~~~ 88 (324)
T 3zq6_A 13 KTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPAHSLSDSLEREI-GHTPTKITE---NLYAVEIDPEVAMEE 88 (324)
T ss_dssp BCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTSCC-CSSCEEEET---TEEEEECCHHHHHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCCcCHHHHhCCcC-CCCCccCCC---CceeeccChHHHHHH
Confidence 4799999999999999999999999999999999999999999999999976 445555432 489999999999888
Q ss_pred HHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCChhHH
Q 015096 168 FRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHTL 247 (413)
Q Consensus 168 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~~~l 247 (413)
+........ ..+.. .++..+..++. .....||..|...+.++.+++. +.+||||||||||++|++
T Consensus 89 ~~~~~~~~~----~~~~~-~~~~~~~~~l~-------~~~~~pg~~e~~~~~~~~~~~~---~~~yD~VIiDtpPt~~~l 153 (324)
T 3zq6_A 89 YQAKLQEQA----AMNPG-MGLDMLQDQMD-------MASMSPGIDEAAAFDQFLRYMT---TDEYDIVIFDTAPTGHTL 153 (324)
T ss_dssp HHHHC---------------------------------CTTSTTHHHHHHHHHHHHHHH---HCCCSEEEEECCCHHHHH
T ss_pred HHHHHHHHH----Hhhcc-cchhhhHHHHH-------HhccCCChHHHHHHHHHHHHHH---hCCCCEEEECCCCCHHHH
Confidence 775332211 11111 11221222111 1235899999999999999886 456999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCc---cchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCc
Q 015096 248 RLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQE---QNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTV 324 (413)
Q Consensus 248 ~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~ 324 (413)
++|.+|+.+.+|++++++++.+.....+.+..+++.. ...+.+++.++++++++++++++|+|+..|++++|++|+.
T Consensus 154 ~lL~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~~~~vlV~~p~~ 233 (324)
T 3zq6_A 154 RLLSFPEIMDSWVGKMIKIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEE 233 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcc
Confidence 9999999999999999999999887777666654322 2237889999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhCCCCCCeEEEecccCCCCCchHHHHHHHHHHHHHHHHhHhcCCCCCCceEEecCCCCCCCCHHHH
Q 015096 325 MAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRGVPAL 404 (413)
Q Consensus 325 ~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~~~~P~~~~e~~g~~~L 404 (413)
+++.+++++++.|++.|+++.|+|+|++.+.. ..|++|+.+.+.|.++++.+.+ .+...++..+|++..||+|+++|
T Consensus 234 ~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~~-~~~~~~~~~~~~~~~~l~~i~~--~~~~~~~~~iPl~~~e~~g~~~L 310 (324)
T 3zq6_A 234 MSIYESERAMKALEKYSIHADGVIVNQVLPEE-SDCEFCNARRKLQQERLKQIRE--KFSDKVVAEVPLLKKEAKGIETL 310 (324)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEEECCSC-CCSHHHHHHHHHHHHHHHHHHH--HTTTSEEEEEECCSSCSCSHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCccEEEEcCCcccc-CCChHHHHHHHHHHHHHHHHHH--HcCCCcEEEecCCCCCCCCHHHH
Confidence 99999999999999999999999999999874 3699999999999999999998 46788999999999999999999
Q ss_pred HHHHHHhhC
Q 015096 405 RFMGDIIWK 413 (413)
Q Consensus 405 ~~l~~~~~~ 413 (413)
+.|++.||+
T Consensus 311 ~~~~~~l~~ 319 (324)
T 3zq6_A 311 EKIAEQLYG 319 (324)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999999984
No 5
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.6e-46 Score=362.39 Aligned_cols=310 Identities=32% Similarity=0.597 Sum_probs=253.7
Q ss_pred chhhhhcCCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccccCCccccccCCCCCeeeec
Q 015096 79 GFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALE 158 (413)
Q Consensus 79 ~~~~~~~~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~ 158 (413)
++..++++..++|+|+||||||||||+|+|||.++|++|+||++||+|++++++++||.+. +..+..+.+.. +++..+
T Consensus 9 ~l~~~~~~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~~~l~~~l~~~~-~~~~~~~~g~~-~l~~~~ 86 (329)
T 2woo_A 9 TLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFGTKF-GKDARKVPGFD-NLSAME 86 (329)
T ss_dssp STHHHHHCTTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTTCHHHHHHSSCC-CSSCEECTTCS-SEEEEE
T ss_pred cHHHHhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCcCHHHHhCCcC-CCCCeeccCCC-CeeEEe
Confidence 3444556667899999999999999999999999999999999999999999999999875 33444444444 388888
Q ss_pred cChHHHHHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEE
Q 015096 159 INPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVF 238 (413)
Q Consensus 159 ~d~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IVi 238 (413)
++++..+.++...+... .+..++. ..+ +.+ ....||+.+...+.++.+.+.. .+||||||
T Consensus 87 ~~~~~~~~~~~~~~~~~---~l~~~l~----~~l-~~l---------~~~~pg~~e~~~~~~~~~~l~~---~~yD~Vii 146 (329)
T 2woo_A 87 IDPNLSIQEMTEQADQQ---NPNNPLS----GMM-QDL---------AFTIPGIDEALAFAEILKQIKS---MEFDCVIF 146 (329)
T ss_dssp CCHHHHHHHHHHTC-----------CC----HHH-HHH---------HTTSTTHHHHHHHHHHHHHHHH---TCCSEEEE
T ss_pred cCHHHHHHHHHHHHhhh---hHHHHhh----HHH-HHH---------hcCCCCHHHHHHHHHHHHHHHh---CCCCEEEE
Confidence 99988887765321100 0111111 001 111 1337999999999998888864 56999999
Q ss_pred cCCCChhHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEE
Q 015096 239 DTAPTGHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVI 318 (413)
Q Consensus 239 DtpP~~~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vl 318 (413)
||||+|+++++|.+|+.+++|++++++++.++......+..++|.....+.+...++.+++.++.+++.++|+..|++++
T Consensus 147 DtpPtg~~l~lL~~p~~~~~~l~~l~~~~~~~~~~~~~l~~~~g~~~~~d~~~~~l~~~~~~~~~~~~~l~d~~~t~~vl 226 (329)
T 2woo_A 147 DTAPTGHTLRFLNFPTVLEKALGKLGGLSSRFGPMINQMGSIMGVNANEQDLFGKMESMRANISEVNKQFKNPDLTTFVC 226 (329)
T ss_dssp ECCSSSCTTTGGGHHHHHHHHHHHHHTSCSSCHHHHHHHHHHHC-----CCTTHHHHHHHHHHHHHHHHHTCTTTEEEEE
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 99999999999999999999999999888877776666666666544445677899999999999999999999999999
Q ss_pred EEcCCcccHHHHHHHHHHHHhCCCCCCeEEEeccc-CCCCCchHHHHHHHHHHHHHHHHhHhcCCCCCCceEEecCCCCC
Q 015096 319 VTIPTVMAVSESSRLSESLKKENVPVKRLIVNQII-PPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVE 397 (413)
Q Consensus 319 Vt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~-p~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~~~~P~~~~e 397 (413)
|++|+.+++.+++++++.|++.|+++.|+|+|++. |. ...|++|..+.+.|.++++++.+ .+.+.++..+|++..|
T Consensus 227 V~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~p~-~~~~~~~~~~~~~q~~~l~~i~~--~~~~~~~~~vP~~~~e 303 (329)
T 2woo_A 227 VCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDP-NTTCPQCMARRKMQQKYLAQIEE--LYEDFHVVKVPQVPAE 303 (329)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECCCS-SCCCHHHHHHHHHHHHHHHHHHH--HTTTSEEEEEECCSSC
T ss_pred EeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcCcc-cccCHHHHHHHHHHHHHHHHHHH--hcCCCCEEEecCCCCC
Confidence 99999999999999999999999999999999999 66 45799999999999999999998 4678899999999999
Q ss_pred CCCHHHHHHHHHHhhC
Q 015096 398 IRGVPALRFMGDIIWK 413 (413)
Q Consensus 398 ~~g~~~L~~l~~~~~~ 413 (413)
|.|+++|++|++.+|+
T Consensus 304 ~~g~~~L~~l~~~l~~ 319 (329)
T 2woo_A 304 VRGTEALKSFSEMLVK 319 (329)
T ss_dssp CCSTTHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999999874
No 6
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=100.00 E-value=1.3e-44 Score=357.35 Aligned_cols=314 Identities=32% Similarity=0.567 Sum_probs=239.8
Q ss_pred CchhhhhcCCCcEEEEEeCCCcchhhHHHHHHHHHHH--HCCCCEEEEecCCCCCcchHhhccccCCccccccCCCCCee
Q 015096 78 SGFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFA--NNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLF 155 (413)
Q Consensus 78 ~~~~~~~~~~~~~i~v~sgKGGvGKTTvAa~LA~~lA--~~G~rVLlvD~D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~ 155 (413)
+.++.+++...++|+|+||||||||||+|+|||.+|| +.|+||+|||+|++++++.+||.+. +..+..+.+..+ ++
T Consensus 7 ~~l~~l~~~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~~~l~~~lg~~~-~~~~~~v~gl~~-l~ 84 (354)
T 2woj_A 7 PNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGEKF-GKDARKVTGMNN-LS 84 (354)
T ss_dssp SSCHHHHTCSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCCHHHHHTSCC-CSSCEECTTCSS-EE
T ss_pred ccHHHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHhCCCC-CCCceeecCCCc-eE
Confidence 3456666667789999999999999999999999999 9999999999999999999999986 456666765444 99
Q ss_pred eeccChHHHHHHHHhhhhccC--------CcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHh
Q 015096 156 ALEINPEKAREEFRNVTQKDG--------GTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLES 227 (413)
Q Consensus 156 ~~~~d~~~~~~~~~~~~~~~~--------~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~ 227 (413)
+.+++++..+.++........ +.+++.+..+ ...+++ ....||++|...+.++.+.+.+
T Consensus 85 ~~~id~~~~l~~~~~~~~~~~~~~~~~~~g~~l~~l~~~----~~~~el---------~~~~pg~~e~~~l~~l~~~l~~ 151 (354)
T 2woj_A 85 CMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQG----GALADL---------TGSIPGIDEALSFMEVMKHIKR 151 (354)
T ss_dssp EEECCHHHHHHHHHTC--------------------CCS----SHHHHH---------HTTSTTHHHHHHHHHHHHHHHH
T ss_pred EEecCHHHHHHHHHHHHHhhcccccccchhhhhhhccch----hHHHHH---------hcCCCChHHHHHHHHHHHHHhc
Confidence 999999988887764321100 0023322111 011111 1337999999999999888765
Q ss_pred c---ccCCccEEEEcCCCChhHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHH
Q 015096 228 Q---EYSMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKV 304 (413)
Q Consensus 228 ~---~~~~yD~IViDtpP~~~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~ 304 (413)
. .+.+||||||||||+|+++++|.+|+.+++|+++++++..++......+.++ + .+++++.++.++++++++
T Consensus 152 ~~~~~~~~yD~IIiDtpPtG~tLrlL~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~ 226 (354)
T 2woj_A 152 QEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLSKLLEKFGEITNKLGPMLNSFMGA-G----NVDISGKLNELKANVETI 226 (354)
T ss_dssp HHHTSCCSCSEEEEECCCHHHHHHHHTHHHHHHHHHHCC--------------------------CHHHHHHHHHHHHHH
T ss_pred ccccccCCCCEEEECCCCchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C----hHHHHHHHHHHHHHHHHH
Confidence 2 1126999999999999999999999999999999998888776554433332 1 234789999999999999
Q ss_pred HHHhcCCCCceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEeccc-CCCCC--chHHHHHHHHHHHHHHHHhHhcC
Q 015096 305 RELFRDTDSTEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQII-PPSAS--DCKFCAMKRKDQMRALEMIKSDS 381 (413)
Q Consensus 305 ~~~l~d~~~t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~-p~~~~--~~~~~~~~~~~q~~~l~~i~~~~ 381 (413)
++.|+||..+.+++|++|+.+++.++.++++.|++.|+++.++|+|++. |.... .+.+|..+.+.|.++|+.+.+
T Consensus 227 ~~~L~d~~~~~~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~~~~~~~~~~~~~~~~~~~~q~~~l~~l~~-- 304 (354)
T 2woj_A 227 RQQFTDPDLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKYLDQIDE-- 304 (354)
T ss_dssp HHHHTCTTTEEEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCC------CHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHhcCCCCcEEEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCCCcccccccccHHHHHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999999999999999999999999999999 65432 588999999999999999987
Q ss_pred CCCCCceEEecCCCCCCCCHHHHHHHHHHhhC
Q 015096 382 ELSSLMLIEAPLVDVEIRGVPALRFMGDIIWK 413 (413)
Q Consensus 382 ~~~~~~~~~~P~~~~e~~g~~~L~~l~~~~~~ 413 (413)
.+.+.++.++|++..+|.|.++|..+++.+++
T Consensus 305 ~~~~~~v~~~P~~~~~~~g~~~l~~la~~l~~ 336 (354)
T 2woj_A 305 LYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNK 336 (354)
T ss_dssp HTTTSEEEEEECCSSCCCHHHHHHHHHHHHHT
T ss_pred hcCCCCEEEeecCCCCCccHHHHHHHHHHHhc
Confidence 35678999999999999999999999998863
No 7
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=100.00 E-value=5.3e-41 Score=332.15 Aligned_cols=277 Identities=19% Similarity=0.213 Sum_probs=207.4
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccccCCccccccCCCCCeeeeccChHHHHHH
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREE 167 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~~~~ 167 (413)
|++|++++|||||||||+|+|||..+|++|+||++||+ ++++++.+||.+. +..++.+.. ++++.++|++...++
T Consensus 1 M~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~~~l~~~~~~~~-~~~~~~v~~---~L~~~eid~~~~~~~ 75 (374)
T 3igf_A 1 MALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AEPVLPLLLEQTL-TPDPQQIAP---NLEVVQFQSSVLLER 75 (374)
T ss_dssp -CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SCSHHHHHHTSCC-CSSCEEEET---TEEEEECCHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CCCChHHhhCCCC-CCCcccccc---cccccccCHHHHHHH
Confidence 46789999999999999999999999999999999999 9999999999986 455666643 599999999998887
Q ss_pred HHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCChhHH
Q 015096 168 FRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHTL 247 (413)
Q Consensus 168 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~~~l 247 (413)
++...... +...+...++. .+...++ ...||.+|.+.+.++.+++.+ .+||||||||||++|++
T Consensus 76 ~~~~~~~~----~~~~l~~~~~~-------~~~~~el--~~~Pg~~E~~~l~~~~~~~~~---~~yD~VIvDtpPtg~tL 139 (374)
T 3igf_A 76 NWEEVKKL----EAQYLRTPIIK-------EVYGQEL--VVLPGMDSALALNAIREYDAS---GKYDTIVYDGTGDAFTL 139 (374)
T ss_dssp HHHHHHHH----HHHHCSSCSSS-------SSCGGGC--CCCTTHHHHHHHHHHHHHHHT---TCCSEEEEECCCSHHHH
T ss_pred HHHHHHHH----HHhhccccccc-------ccchhhh--ccCCCHHHHHHHHHHHHHHhc---cCCCEEEEeCCCChHHh
Confidence 76533211 11111111111 1111111 358999999999999998864 46999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHH--H-H--HHHHHh----hhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEE
Q 015096 248 RLLSLPDFLDASIGKILKLREKIA--S-A--TSAIKS----VFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVI 318 (413)
Q Consensus 248 ~~l~l~~~~~~~l~~~~~~~~~~~--~-~--~~~~~~----~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vl 318 (413)
++|.+|+.+.+|++++++++.+.. . . .+.+.. .+|.....+++.+.++++++++++++++|+||..|++++
T Consensus 140 rlL~lP~~l~~~l~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~t~~vl 219 (374)
T 3igf_A 140 RMLGLPESLSWYVRRFRQLFVNSDLGKTIAESPLIQPLISSFFNVNWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFL 219 (374)
T ss_dssp HHHTHHHHHHHHHHHTTSCC-----------------------------------CHHHHHHHHHHHHHHHCTTTEEEEE
T ss_pred hhhhhhHHHHHHHHHHHHHHhhhccccccccchhhhhhhhhhccCCCchHHHHHHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 999999999999999888887741 1 1 122222 234444568889999999999999999999999999999
Q ss_pred EEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCCCCCchHHHHHHHHHHHHHHHHhHhcCCCCCCceEEecCCCCCC
Q 015096 319 VTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEI 398 (413)
Q Consensus 319 Vt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~~~~P~~~~e~ 398 (413)
|++|+.+++.+++++++.|++.|+++.|+|+|| |+ +++.|.+ .|.+.++..+|++.+|
T Consensus 220 Vt~pe~~sl~ea~r~~~~L~~~gi~v~gvVvN~--~~-----------------~l~~i~~--~F~~~~v~~vpl~~~e- 277 (374)
T 3igf_A 220 VTTADPLEVVSVRYLWGSAQQIGLTIGGVIQVS--SQ-----------------TEGDLSA--EFTPLSVTVVPDVTKG- 277 (374)
T ss_dssp EECSCHHHHHHHHHHHHHHHHHTCCEEEEEECC--CS-----------------CCCCCGG--GSTTSCEEECCCCBTT-
T ss_pred EECCCccHHHHHHHHHHHHHHcCCCccEEEEcC--HH-----------------HHHHHHH--hcCCCceEECCCCChh-
Confidence 999999999999999999999999999999999 32 4567777 4789999999999988
Q ss_pred CCHHHHHHHHHHh
Q 015096 399 RGVPALRFMGDII 411 (413)
Q Consensus 399 ~g~~~L~~l~~~~ 411 (413)
.|+.|++.+
T Consensus 278 ----~l~~l~~~l 286 (374)
T 3igf_A 278 ----DWQPLIDAL 286 (374)
T ss_dssp ----BCHHHHHHC
T ss_pred ----HHHHHHHHh
Confidence 566666543
No 8
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=100.00 E-value=8.1e-36 Score=313.81 Aligned_cols=287 Identities=29% Similarity=0.388 Sum_probs=217.9
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccccCCccccccCCCCCeeeeccChHHHHHH
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREE 167 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~~~~ 167 (413)
+++|+|+||||||||||+|+|||.++|++|+|||+||+|++++++++||.+. +..+..+.+..+ ++..+++++....+
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~~~l~~~l~~~~-~~~~~~v~~~~~-l~~~~~d~~~~~~~ 84 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTI-GNTIQAIASVPG-LSALEIDPQAAAQQ 84 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHTTSCC-CSSCEECTTSTT-EEEEECCHHHHHHH
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCCcCHHHHhCCcc-cCCCceeccchh-hhhccCCHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999976 345555554444 89999999888777
Q ss_pred HHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHh-cccCCccEEEEcCCCChhH
Q 015096 168 FRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLES-QEYSMFTRIVFDTAPTGHT 246 (413)
Q Consensus 168 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~-~~~~~yD~IViDtpP~~~~ 246 (413)
+.+...... ...++. .....+.+.+ ..+++.|+....++.+++.+ ..+.+||||||||||++++
T Consensus 85 ~~~~~~~~~---~~~lp~-~~~~~~~~~l-----------~~~~~~e~~~~~~~~~ll~~~~l~~~yD~VIiDt~P~~~~ 149 (589)
T 1ihu_A 85 YRARIVDPI---KGVLPD-DVVSSINEQL-----------SGACTTEIAAFDEFTGLLTDASLLTRFDHIIFDTAPTGHT 149 (589)
T ss_dssp HHHHHHGGG---TTTSCH-HHHHHHHHHT-----------SSHHHHHHHHHHHHHHHHHCTTHHHHCSEEEESSCCCHHH
T ss_pred HHHHHHHHH---HHhcch-hhHHHHHHHh-----------cccchHHHHHHHHHHHHHhchhhcccCCEEEECCCCchhH
Confidence 664332111 011111 1111111111 12356788888888888872 1245699999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccc
Q 015096 247 LRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMA 326 (413)
Q Consensus 247 l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~~~ 326 (413)
++++.+|..+.+|+.+.... ...+|. +..+...+++++++.+.+.|+..|.+++|++|+..+
T Consensus 150 lrll~lP~~~~~~l~~~~~~-----------~~~l~~-------~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~ 211 (589)
T 1ihu_A 150 IRLLQLPGAWSSFIDSNPEG-----------ASCLGP-------MAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKST 211 (589)
T ss_dssp HHHHHCGGGGTCCC-----------------CCCCGG-------GGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHH
T ss_pred HHHHHhHHHHHHHHHHhhcc-----------ccccch-------hhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccH
Confidence 99999998777665542110 001110 111233345667788899999988999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEEecccCCCC-CchHHHHHHHHHHHHHHHHhHhcCCCCCCceEEecCCCCCCCCHHHHH
Q 015096 327 VSESSRLSESLKKENVPVKRLIVNQIIPPSA-SDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRGVPALR 405 (413)
Q Consensus 327 ~~~~~r~~~~l~~~g~~~~gvVvN~v~p~~~-~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~~~~P~~~~e~~g~~~L~ 405 (413)
+.++.++++.|++.|+++.|+|+|++.+... ..|.++..+...|.++++.+++ .|.+.++..+|++..|+.|+++|+
T Consensus 212 ~~~~~~~~~~L~~~g~~~~gvVlN~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~vPl~~~e~~g~~~l~ 289 (589)
T 1ihu_A 212 LQEVARTHLELAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQEALANLPA--DLAGLPTDTLFLQPVNMVGVSALS 289 (589)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEEEEEECCGGGGSSCHHHHHHHHHHHHHHHTCCH--HHHTSCEEEEECCSSCCCSHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEcCCcCccccccCHHHHHHHHHHHHHHHHHHH--hccCCCEEEecCCCCCCCCHHHHH
Confidence 9999999999999999999999999998754 4689999999999999999987 467889999999999999999999
Q ss_pred HHHHHh
Q 015096 406 FMGDII 411 (413)
Q Consensus 406 ~l~~~~ 411 (413)
+++..+
T Consensus 290 ~~~~~~ 295 (589)
T 1ihu_A 290 RLLSTQ 295 (589)
T ss_dssp HTTCSC
T ss_pred HHHhhh
Confidence 987543
No 9
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=100.00 E-value=4.3e-32 Score=285.40 Aligned_cols=269 Identities=25% Similarity=0.399 Sum_probs=185.5
Q ss_pred Cchhhhhc---CCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccccCCccccccCCCCCe
Q 015096 78 SGFDEMVA---GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPL 154 (413)
Q Consensus 78 ~~~~~~~~---~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~~~~~~~~v~~~~~~l 154 (413)
..++.++. ...++|+|++|||||||||+|+|||..++++|+||++||+||+++++.+|+.... ++
T Consensus 313 ~~l~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~~l~~~l~~~~~------------~l 380 (589)
T 1ihu_A 313 PSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLSMTLNGSLN------------NL 380 (589)
T ss_dssp CCHHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-----------C------------CE
T ss_pred chhhhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCcccHhHHhcccCC------------Cc
Confidence 44544444 4567899999999999999999999999999999999999999999999987431 26
Q ss_pred eeeccChHHHHHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCcc
Q 015096 155 FALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFT 234 (413)
Q Consensus 155 ~~~~~d~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD 234 (413)
+...+++......+...+......++. ......+.+. ...|+..+.....++.+.+. +.+||
T Consensus 381 ~~~~~~~~~~~~~~~~~v~~~~~~~l~----~~~~~~~~~~-----------~~~p~~~e~~~~~~l~~~~~---~~~~D 442 (589)
T 1ihu_A 381 QVSRIDPHEETERYRQHVLETKGKELD----EAGKRLLEED-----------LRSPCTEEIAVFQAFSRVIR---EAGKR 442 (589)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHH-----------TTSHHHHHHHHHHHHTTTGG---GGGTS
T ss_pred eeeecchHHHHHHHHHHHHHhhhccCC----hhhHHHHHHH-----------hcCCChHHHHHHHHHHHHHh---ccCCC
Confidence 667777765555443322111000111 0111111111 11456666666655555443 34699
Q ss_pred EEEEcCCCChhHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCc
Q 015096 235 RIVFDTAPTGHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDST 314 (413)
Q Consensus 235 ~IViDtpP~~~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t 314 (413)
||||||||+++++++|.+|+.+.+++.+.+ +. .. .+..+...+.|+..+
T Consensus 443 ~vviD~~p~~~tl~ll~~p~~~~~~~~~~~-----------------~~-------------~~-~~~~~~~~l~d~~~~ 491 (589)
T 1ihu_A 443 FVVMDTAPTGHTLLLLDATGAYHREIAKKM-----------------GE-------------KG-HFTTPMMLLQDPERT 491 (589)
T ss_dssp EEEESCCCCHHHHHHHHHC-------------------------------------------------CCHHHHHCTTTE
T ss_pred EEEEcCCCCccHHHHHHhHHHHHHHHHHhc-----------------cc-------------ch-HHHHHHHHhcCCCCC
Confidence 999999999999999999987543332110 00 00 122334567788889
Q ss_pred eEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCCCCCchHHHHHHHHHHHHHHHHhHhcCCCCCCceEEecCC
Q 015096 315 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLV 394 (413)
Q Consensus 315 ~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~~~~P~~ 394 (413)
.+++|++|+.+++.++.++++.|++.|+++.|+|+|++.+.....|++|..+...|.++++.|.+. | +.++..+|++
T Consensus 492 ~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~-~~~v~~iP~~ 568 (589)
T 1ihu_A 492 KVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQ--H-ASRVALVPVL 568 (589)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTTSCCCCHHHHHHHHHHHHHHHHHHTT--T-CSSEEEEECC
T ss_pred EEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHHHHHHHh--c-CCcEEEccCC
Confidence 999999999999999999999999999999999999999987778999999999999999999984 3 4688999999
Q ss_pred CCCCCCHHHHHHHHHH
Q 015096 395 DVEIRGVPALRFMGDI 410 (413)
Q Consensus 395 ~~e~~g~~~L~~l~~~ 410 (413)
.+||+|+++|+.++.+
T Consensus 569 ~~e~~g~~~l~~~~~~ 584 (589)
T 1ihu_A 569 ASEPTGIDKLKQLAGH 584 (589)
T ss_dssp SSCCCSHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHhcc
Confidence 9999999999988753
No 10
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.94 E-value=3e-27 Score=225.00 Aligned_cols=234 Identities=16% Similarity=0.176 Sum_probs=154.3
Q ss_pred hhhhHHHhhhhhhhhhhccccCCCCCCCCCCccccccccccccccCccccccccCCcccCCchhhhhc-----CCCcEEE
Q 015096 18 SIHKKLAVKRNSNAVSFMGLLSFSPKTSSFSTGLISISLKQRRSKNSFQVRAVAAPSEAVSGFDEMVA-----GTQRKYY 92 (413)
Q Consensus 18 ~~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~ 92 (413)
.|++..++++.+. ++.+|.+|..+.... .... ........+.++.+|+++.++..+. ..+++|+
T Consensus 18 ~i~~~~~ie~~~~-~p~lg~iP~~~~~~~-~~~~---------~~~~~~~~~~~~~~Ea~r~lrt~l~~~~~~~~~kvI~ 86 (271)
T 3bfv_A 18 RIKDEEDVEKELG-LPVLGSIQKFNMTNT-RRST---------SSLIVHEQPKSPISEKFRGIRSNIMFANPDSAVQSIV 86 (271)
T ss_dssp CCCSHHHHHHHHC-CCEEEEEECCCTTTT-TSCS---------SSCHHHHCTTSHHHHHHHHHHHHHHHSSTTCCCCEEE
T ss_pred cCCCHHHHHHHhC-CCeEEEecccccccc-cccc---------cceeeecCCCCHHHHHHHHHHHHHHhhccCCCCeEEE
Confidence 4556666666554 667777777654110 0000 0001111223344566666665443 4678999
Q ss_pred EEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhhccccCCccccccCCCCCeeeeccChHHHHHHHHhh
Q 015096 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREEFRNV 171 (413)
Q Consensus 93 v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~~~~~~~~ 171 (413)
|+|.|||+||||+|+|||..||+.|+||+|||+|+++ +++.+||.+...+....+.+ ..+. ++ .
T Consensus 87 vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~--------~~~l----~~---~ 151 (271)
T 3bfv_A 87 ITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLN--------WSTY----QD---S 151 (271)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTT--------SSCH----HH---H
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCC--------CCCH----HH---c
Confidence 9999999999999999999999999999999999995 99999998753332222211 0111 11 1
Q ss_pred hhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCChhHHHhcC
Q 015096 172 TQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHTLRLLS 251 (413)
Q Consensus 172 ~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~~~l~~l~ 251 (413)
+......+++.++++ ..+|++.+++...++.++++.. .++||||||||||.....+...
T Consensus 152 i~~~~~~~l~vl~~g--------------------~~~~~~~ell~~~~l~~ll~~l-~~~yD~VIIDtpp~~~~~d~~~ 210 (271)
T 3bfv_A 152 IISTEIEDLDVLTSG--------------------PIPPNPSELITSRAFANLYDTL-LMNYNFVIIDTPPVNTVTDAQL 210 (271)
T ss_dssp EEECSSTTEEEECCC--------------------SCCSCHHHHHTSHHHHHHHHHH-HHHCSEEEEECCCTTTCSHHHH
T ss_pred EEeCCCCCEEEEECC--------------------CCCCCHHHHhChHHHHHHHHHH-HhCCCEEEEeCCCCchHHHHHH
Confidence 111112344444332 2367778887778888888763 4579999999999644322111
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcccHHHHH
Q 015096 252 LPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVSESS 331 (413)
Q Consensus 252 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~~~~~~~~ 331 (413)
+.. ..+.+++|+.++..+..++.
T Consensus 211 l~~---------------------------------------------------------~aD~vilVv~~~~~~~~~~~ 233 (271)
T 3bfv_A 211 FSK---------------------------------------------------------FTGNVVYVVNSENNNKDEVK 233 (271)
T ss_dssp HHH---------------------------------------------------------HHCEEEEEEETTSCCHHHHH
T ss_pred HHH---------------------------------------------------------HCCEEEEEEeCCCCcHHHHH
Confidence 100 01479999999999999999
Q ss_pred HHHHHHHhCCCCCCeEEEecccCC
Q 015096 332 RLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 332 r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
++++.+++.|+++.|+|+|++.+.
T Consensus 234 ~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 234 KGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HHHHHHHTTTCEEEEEEEEEECC-
T ss_pred HHHHHHHhCCCCEEEEEEeCCcCC
Confidence 999999999999999999998765
No 11
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.94 E-value=4.5e-27 Score=225.30 Aligned_cols=194 Identities=15% Similarity=0.188 Sum_probs=140.7
Q ss_pred ccCCcccCCchhhhhc-----CCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC-CCcchHhhccccCCc
Q 015096 70 VAAPSEAVSGFDEMVA-----GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQDLTGGQ 143 (413)
Q Consensus 70 ~~~~~~~~~~~~~~~~-----~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~-~~l~~~lg~~~~~~~ 143 (413)
.++.+|+++.++..+. ...++|+|+|+|||+||||+|+|||..||+.|+||||||+|++ ++++.+||.+...+.
T Consensus 69 ~~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl 148 (286)
T 3la6_A 69 TDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGL 148 (286)
T ss_dssp TCHHHHHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCH
T ss_pred CCHHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCH
Confidence 3344566777765553 4668999999999999999999999999999999999999999 599999998764333
Q ss_pred cccccCCCCCeeeeccChHHHHHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHH
Q 015096 144 LVPVEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQ 223 (413)
Q Consensus 144 ~~~v~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~ 223 (413)
...+.+. .+.+ +.+......+++.++.+ ..+|++.+++...++.+
T Consensus 149 ~~~l~~~--------~~~~-------~~i~~~~~~~l~vl~~g--------------------~~~~~~~ell~~~~l~~ 193 (286)
T 3la6_A 149 SEILIGQ--------GDIT-------TAAKPTSIAKFDLIPRG--------------------QVPPNPSELLMSERFAE 193 (286)
T ss_dssp HHHHHTS--------SCTT-------TTCEECSSTTEEEECCC--------------------SCCSCHHHHHTSHHHHH
T ss_pred HHHccCC--------CCHH-------HheeccCCCCEEEEeCC--------------------CCCCCHHHHhchHHHHH
Confidence 2222211 0000 01111112234433332 23678888888888888
Q ss_pred HHHhcccCCccEEEEcCCCChhHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHH
Q 015096 224 FLESQEYSMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVK 303 (413)
Q Consensus 224 ~l~~~~~~~yD~IViDtpP~~~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 303 (413)
+++. ..+.||||||||||.....+...+
T Consensus 194 ll~~-l~~~yD~VIIDtpp~~~~~da~~l--------------------------------------------------- 221 (286)
T 3la6_A 194 LVNW-ASKNYDLVLIDTPPILAVTDAAIV--------------------------------------------------- 221 (286)
T ss_dssp HHHH-HHHHCSEEEEECCCTTTCTHHHHH---------------------------------------------------
T ss_pred HHHH-HHhCCCEEEEcCCCCcchHHHHHH---------------------------------------------------
Confidence 8876 345799999999996543221111
Q ss_pred HHHHhcCCCCceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCCC
Q 015096 304 VRELFRDTDSTEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPS 356 (413)
Q Consensus 304 ~~~~l~d~~~t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~~ 356 (413)
....+.+++|+.++.++..++.++++.+++.|.++.|+|+|++.+..
T Consensus 222 ------~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 222 ------GRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp ------TTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred ------HHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 11235899999999999999999999999999999999999997664
No 12
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.92 E-value=1.2e-25 Score=216.91 Aligned_cols=193 Identities=20% Similarity=0.224 Sum_probs=137.6
Q ss_pred cCCcccCCchhhhhc-----CCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC-CCcchHhhccccCCcc
Q 015096 71 AAPSEAVSGFDEMVA-----GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQDLTGGQL 144 (413)
Q Consensus 71 ~~~~~~~~~~~~~~~-----~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~-~~l~~~lg~~~~~~~~ 144 (413)
++..|+++.++..+. ..+++|+|+|.|||+||||+|+|||..||+.|+||+|||+|++ ++++.+||.+...+..
T Consensus 82 ~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~ 161 (299)
T 3cio_A 82 DSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLS 161 (299)
T ss_dssp CHHHHHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHH
T ss_pred CHHHHHHHHHHHHHHHhccCCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHH
Confidence 334566666655443 4678999999999999999999999999999999999999997 6999999987533322
Q ss_pred ccccCCCCCeeeeccChHHHHHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHH
Q 015096 145 VPVEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQF 224 (413)
Q Consensus 145 ~~v~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~ 224 (413)
..+.+ ..+.+ + .+......+++.++++ ..+|++.+++...++.++
T Consensus 162 ~~L~~--------~~~l~----~---~i~~~~~~~l~vl~~g--------------------~~~~~~~ell~~~~l~~l 206 (299)
T 3cio_A 162 EYLAG--------KDELN----K---VIQHFGKGGFDVITRG--------------------QVPPNPSELLMRDRMRQL 206 (299)
T ss_dssp HHHTT--------SSCHH----H---HCEEETTTTEEEECCC--------------------SCCSCHHHHHTSHHHHHH
T ss_pred HHCcC--------CCCHH----H---hhhccCCCCEEEEECC--------------------CCCCCHHHHhCHHHHHHH
Confidence 22211 01111 1 1111112344444332 236777888878888888
Q ss_pred HHhcccCCccEEEEcCCCChhHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHH
Q 015096 225 LESQEYSMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKV 304 (413)
Q Consensus 225 l~~~~~~~yD~IViDtpP~~~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~ 304 (413)
++.. .++||||||||||.....+...+.
T Consensus 207 l~~l-~~~yD~VIIDtpp~~~~~d~~~l~--------------------------------------------------- 234 (299)
T 3cio_A 207 LEWA-NDHYDLVIVDTPPMLAVSDAAVVG--------------------------------------------------- 234 (299)
T ss_dssp HHHH-HHHCSEEEEECCCTTTCTHHHHHG---------------------------------------------------
T ss_pred HHHH-HhCCCEEEEcCCCCchhHHHHHHH---------------------------------------------------
Confidence 8763 457999999999964422111000
Q ss_pred HHHhcCCCCceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCCC
Q 015096 305 RELFRDTDSTEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPS 356 (413)
Q Consensus 305 ~~~l~d~~~t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~~ 356 (413)
...+.+++|+.++..+..++.++++.+++.|+++.|+|+|++.+..
T Consensus 235 ------~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 280 (299)
T 3cio_A 235 ------RSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKRA 280 (299)
T ss_dssp ------GGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCCC
T ss_pred ------HHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccCC
Confidence 0135899999999999999999999999999999999999997663
No 13
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=99.90 E-value=2.6e-24 Score=208.55 Aligned_cols=234 Identities=17% Similarity=0.263 Sum_probs=131.8
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccccCCccccccCCCCCeeeeccChHHHHH
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKARE 166 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~~~ 166 (413)
..|+|+|+ |||||||||+|+|||.+||+.|+||++||+||+++....++............... .....+. .+
T Consensus 47 ~aKVIAIa-GKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~--~~~~~~~----~~ 119 (314)
T 3fwy_A 47 GAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVD--FHPEELR----PE 119 (314)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTT--SCGGGCC----HH
T ss_pred CceEEEEE-CCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCCcchhhHhhhc--ccccccc----Hh
Confidence 45788887 89999999999999999999999999999999986555554332111100000000 0000000 11
Q ss_pred HHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCC--HHHHHHHHHHHHHHHhcccCCccEEEEcCCCCh
Q 015096 167 EFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPG--LDEAIAISKVIQFLESQEYSMFTRIVFDTAPTG 244 (413)
Q Consensus 167 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg--~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~ 244 (413)
+.. .....++..++.+ ...++ .........+..+.....++.||||++||||..
T Consensus 120 d~i----~~~~~~i~~v~~~--------------------~~~~~~~~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~ 175 (314)
T 3fwy_A 120 DFV----FEGFNGVMCVEAG--------------------GPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDV 175 (314)
T ss_dssp HHC----EECGGGCEEEECC--------------------CCCTTCSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSS
T ss_pred Hhe----eecCCCeEEEeCC--------------------CCcccchhhhccHHHHHHHHHhcchhhcCceEeeccCCcc
Confidence 100 0111122222111 11121 122222334444444446788999999999854
Q ss_pred hHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCc
Q 015096 245 HTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTV 324 (413)
Q Consensus 245 ~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~ 324 (413)
..+.+. . .+. ..+.+++|++|+.
T Consensus 176 ~~~~~~-~------------------------------------------------------al~--aAd~viIvt~~e~ 198 (314)
T 3fwy_A 176 VCGGFA-A------------------------------------------------------PLQ--HADQAVVVTANDF 198 (314)
T ss_dssp CCGGGG-G------------------------------------------------------GGG--TCSEEEEEECSSH
T ss_pred hhhhhH-h------------------------------------------------------HHh--hCCeEEEEeCCcH
Confidence 322211 0 011 2358999999999
Q ss_pred ccHHHHHHHHHHHHhC----CCCCCeEEEecccCCCCCchHHHHHHHHHHHHHHHHhHhcCCCCCCceEEecCCCCCCCC
Q 015096 325 MAVSESSRLSESLKKE----NVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRG 400 (413)
Q Consensus 325 ~~~~~~~r~~~~l~~~----g~~~~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~~~~P~~~~e~~g 400 (413)
.++..+.++++.++.. +.++.|+|+|+.... ............+.++.|+.+..+........|.+..+|..
T Consensus 199 ~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~----~~v~~~a~~~~~~~lg~IP~d~~Vr~a~~~G~pvv~~~P~S 274 (314)
T 3fwy_A 199 DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT----DEVDRFCKETNFRRLAHMPDLDAIRRSRLKKKTLFEMDEDQ 274 (314)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC----HHHHHHHHHHTCCEEEEECCCHHHHHHHHTTCCTTTSCCCH
T ss_pred HHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch----hHHHHHHHHhCCeEEEEecCchHHHHHHHcCCceEEECCCC
Confidence 9999999999888764 456679999985432 12111111222334445555433333334456777777765
Q ss_pred H--HH---HHHHHHHhh
Q 015096 401 V--PA---LRFMGDIIW 412 (413)
Q Consensus 401 ~--~~---L~~l~~~~~ 412 (413)
- .+ ..+|++.|+
T Consensus 275 ~~a~aa~~Y~~LA~eil 291 (314)
T 3fwy_A 275 DVLAARAEYIRLAESLW 291 (314)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 2 23 567888776
No 14
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.89 E-value=7.7e-25 Score=204.38 Aligned_cols=245 Identities=16% Similarity=0.140 Sum_probs=140.9
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccccCCccccccCCCCCeeeeccChHHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREEFR 169 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~~~~~~ 169 (413)
+|+| |+||||||||+|+|||..||++|+||++||+|++++++.+||.+.... ..+.+ ..+....+....
T Consensus 2 kI~v-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~l~~~lg~~~~~~--~~~~~--------~~~~~~~~~~~~ 70 (254)
T 3kjh_A 2 KLAV-AGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPDSCLGQTLGLSIEEA--YAITP--------LIEMKDEIREKT 70 (254)
T ss_dssp EEEE-ECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTTSCHHHHTTCCHHHH--HTSCC--------GGGCHHHHHHHH
T ss_pred EEEE-ecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCcChHHHhCCCcccc--ccccc--------chhHHHHHHhhc
Confidence 5788 899999999999999999999999999999999999999999865210 00000 011111111110
Q ss_pred h-hhhccCCcchhhhhcccchhhHHHHHhh-hhcccccCCCCCCHHHHHH--HHHHHHHHHhcccCCccEEEEcCCCChh
Q 015096 170 N-VTQKDGGTGVKDFMDGMGLGMLVEQLGE-LKLGELLDTPPPGLDEAIA--ISKVIQFLESQEYSMFTRIVFDTAPTGH 245 (413)
Q Consensus 170 ~-~~~~~~~~~l~~l~~~~~~~~~~~~l~~-~~~~~~l~~~~pg~~e~~~--~~~l~~~l~~~~~~~yD~IViDtpP~~~ 245 (413)
. ........+++.+++...... .++.. +..+. ..++..+... ...+.+++....++.||||||||||...
T Consensus 71 ~~~~~~~~~~~l~~i~~~~~~~~--~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~viiD~pp~~~ 144 (254)
T 3kjh_A 71 GDGGLLILNPKVDGDLDKYGRYI--DDKIFLIRMGE----IKKGGSQCYCRENSFLGSVVSALFLDKKEAVVMDMGAGIE 144 (254)
T ss_dssp CSSSCCCSSCCCTTSGGGSSEES--SSSEEEEECCC----CCCCCSSCCHHHHHHHHHHHHHHHHTCCSEEEEEECTTCT
T ss_pred cCCcccccCCchhccHHhccccc--CCeEEEEEecc----cccCCCCCCcchHHHHHHHHHHhccCCCCEEEEeCCCccc
Confidence 0 000011123344433211110 00000 00000 0011111011 1334555544215679999999999543
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcc
Q 015096 246 TLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVM 325 (413)
Q Consensus 246 ~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~~ 325 (413)
... . ..+. ..+.+++|++|+..
T Consensus 145 ~~~----~----------------------------------------------------~~l~--~aD~viiv~~~~~~ 166 (254)
T 3kjh_A 145 HLT----R----------------------------------------------------GTAK--AVDMMIAVIEPNLN 166 (254)
T ss_dssp TCC----H----------------------------------------------------HHHT--TCSEEEEEECSSHH
T ss_pred HHH----H----------------------------------------------------HHHH--HCCEEEEecCCCHH
Confidence 210 0 0111 23589999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCeEEEecccCCCCCchHHHHHHHHHHHHHHHHhHhcCCCCCCceEEecCCCCCCCCHHHHH
Q 015096 326 AVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRGVPALR 405 (413)
Q Consensus 326 ~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~~~~P~~~~e~~g~~~L~ 405 (413)
++..+.++.+.++..+++..++|+|++.+.. .......... ....+..|+++..+........|.+...+....+++
T Consensus 167 s~~~~~~~~~~~~~~~~~~~~~v~N~~~~~~--~~~~~~~~~~-~~~~~~~Ip~~~~~~~a~~~g~~~~~~~~~~~~~~~ 243 (254)
T 3kjh_A 167 SIKTGLNIEKLAGDLGIKKVRYVINKVRNIK--EEKLIKKHLP-EDKILGIIPYNELFIELSLKGEEIWQSTNPAFVNLH 243 (254)
T ss_dssp HHHHHHHHHHHHHHHTCSCEEEEEEEECCHH--HHHHHHHHSC-GGGEEEEEECCHHHHSCSSSSCCTTSTTSTTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccEEEEEeCCCChh--HHHHHHHHhc-CCcccccccCcHHHHHHHhCCCccccCCcHHHHHHH
Confidence 9999999999999999988899999987431 1111111000 012223344443444444456677777788889999
Q ss_pred HHHHHhh
Q 015096 406 FMGDIIW 412 (413)
Q Consensus 406 ~l~~~~~ 412 (413)
.|++.|.
T Consensus 244 ~la~~l~ 250 (254)
T 3kjh_A 244 DIYQKLR 250 (254)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988774
No 15
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.89 E-value=2.4e-24 Score=208.25 Aligned_cols=235 Identities=16% Similarity=0.256 Sum_probs=133.7
Q ss_pred CCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccccCCccccccCCCCCeeeeccChHHHH
Q 015096 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAR 165 (413)
Q Consensus 86 ~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~~ 165 (413)
+.+++|+|+ |||||||||+|+|||.+||++|+||++||+|++++++.+|+.+...+....+.+.. ......+ +
T Consensus 39 ~~~~vI~v~-~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~l~~~~~~~l~d~l~~~~--~~~~~~~----~ 111 (307)
T 3end_A 39 TGAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVD--FHPEELR----P 111 (307)
T ss_dssp -CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTT--SCGGGCC----H
T ss_pred CCceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCccCCCCHHHHHhhcc--ccccCCC----H
Confidence 356899999 89999999999999999999999999999999999999888653221111110000 0000011 1
Q ss_pred HHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHh-cccCCccEEEEcCCCCh
Q 015096 166 EEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLES-QEYSMFTRIVFDTAPTG 244 (413)
Q Consensus 166 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~-~~~~~yD~IViDtpP~~ 244 (413)
+++. . ....+++.++.+.... ..+... .......+++.. ..++.||||||||||..
T Consensus 112 ~~~i---~-~~~~~l~vlp~~~~~~------------------~~~~~~-~~~~~~~~~l~~~~~~~~yD~ViiD~p~~~ 168 (307)
T 3end_A 112 EDFV---F-EGFNGVMCVEAGGPPA------------------GTGCGG-YVVGQTVKLLKQHHLLDDTDVVIFDVLGDV 168 (307)
T ss_dssp HHHC---E-ECGGGCEEEECCCCCS------------------SSSCTT-HHHHHHHHHHHHTTTTSSCSEEEEEECCSS
T ss_pred HHhh---c-cCCCCceEEECCCccc------------------ccccch-hhhHHHHHHHHhhhccccCCEEEEeCCCcc
Confidence 1111 0 1223444443321100 001111 112223334433 24567999999999953
Q ss_pred hHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCc
Q 015096 245 HTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTV 324 (413)
Q Consensus 245 ~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~ 324 (413)
....+.. .+. ..+.+++|++|+.
T Consensus 169 ~~~~~~~-------------------------------------------------------~l~--~aD~viiv~~~~~ 191 (307)
T 3end_A 169 VCGGFAA-------------------------------------------------------PLQ--HADQAVVVTANDF 191 (307)
T ss_dssp CCGGGGG-------------------------------------------------------GGG--TCSEEEEEECSSH
T ss_pred chHHHHH-------------------------------------------------------HHH--HCCEEEEEecCcH
Confidence 3211110 011 2358999999999
Q ss_pred ccHHHHHHHHHHHHhC----CCCCCeEEEecccCCCCCchHHHHH-HHHHHHHHHHHhHhcCCCCCCceEEecCCCCCCC
Q 015096 325 MAVSESSRLSESLKKE----NVPVKRLIVNQIIPPSASDCKFCAM-KRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIR 399 (413)
Q Consensus 325 ~~~~~~~r~~~~l~~~----g~~~~gvVvN~v~p~~~~~~~~~~~-~~~~q~~~l~~i~~~~~~~~~~~~~~P~~~~e~~ 399 (413)
.++..+.++++.++.. ++++.|+|+||+.+.. .... .......+++.|+++..+........|.+...+.
T Consensus 192 ~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~~-----~~~~~~~~~g~~v~~~Ip~~~~v~~a~~~g~~v~~~~p~ 266 (307)
T 3end_A 192 DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRATD-----EVDRFCKETNFRRLAHMPDLDAIRRSRLKKKTLFEMDED 266 (307)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCCH-----HHHHHHHHHTCCEEEEECCCHHHHHHHHTTCCTTTSCCC
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcHH-----HHHHHHHHcCCCceeeCCccHHHHHHHHcCCCeEeeCCc
Confidence 9999999999999874 5666799999987531 1111 0011122333444443333333334566666665
Q ss_pred -----CHHHHHHHHHHhh
Q 015096 400 -----GVPALRFMGDIIW 412 (413)
Q Consensus 400 -----g~~~L~~l~~~~~ 412 (413)
...++..|++.|.
T Consensus 267 ~~~s~~~~~~~~la~~l~ 284 (307)
T 3end_A 267 QDVLAARAEYIRLAESLW 284 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 3555666666553
No 16
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.89 E-value=5.8e-23 Score=191.36 Aligned_cols=179 Identities=16% Similarity=0.224 Sum_probs=115.9
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHC-CCCEEEEecCCC-CCcchHhh-ccccCCccccccCCCCCeeeeccChHH
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDPA-HSLSDSFA-QDLTGGQLVPVEGPDFPLFALEINPEK 163 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~-G~rVLlvD~D~~-~~l~~~lg-~~~~~~~~~~v~~~~~~l~~~~~d~~~ 163 (413)
.+++|+|+|+||||||||+|+|||.+||++ |+||++||+|++ ++++.+|+ .+...+ +.....+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~-----------l~~~l~~~~~ 71 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQD-----------LADISNASDR 71 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCC-----------HHHHHHTGGG
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCC-----------HHHHHhhHhh
Confidence 568999999999999999999999999998 999999999999 79999995 322111 1111000000
Q ss_pred HHHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCC
Q 015096 164 AREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPT 243 (413)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~ 243 (413)
....+.+........+++.++.+....... .+....+.+++.. ..+.||||||||||.
T Consensus 72 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---------------------~~~~~~l~~~l~~-l~~~yD~viiD~p~~ 129 (245)
T 3ea0_A 72 LDKSLLDTMVQHISPSLDLIPSPATFEKIV---------------------NIEPERVSDLIHI-AASFYDYIIVDFGAS 129 (245)
T ss_dssp CCHHHHHHHSEEEETTEEEECCCSSHHHHH---------------------HCCHHHHHHHHHH-HHHHCSEEEEEEESS
T ss_pred hhHHHHHHHhEecCCCeEEEcCCCChHhhh---------------------cCCHHHHHHHHHH-HHhhCCEEEEeCCCC
Confidence 000111111112223455554433222111 1112344555544 234699999999995
Q ss_pred hhHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCC
Q 015096 244 GHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPT 323 (413)
Q Consensus 244 ~~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~ 323 (413)
...... ..+. ..+.+++|+.|+
T Consensus 130 ~~~~~~--------------------------------------------------------~~l~--~ad~viiv~~~~ 151 (245)
T 3ea0_A 130 IDHVGV--------------------------------------------------------WVLE--HLDELCIVTTPS 151 (245)
T ss_dssp CCTTHH--------------------------------------------------------HHGG--GCSEEEEEECSS
T ss_pred CchHHH--------------------------------------------------------HHHH--HCCEEEEEecCc
Confidence 432100 0111 135899999999
Q ss_pred cccHHHHHHHHHHHHhCC--CCCCeEEEecccCCC
Q 015096 324 VMAVSESSRLSESLKKEN--VPVKRLIVNQIIPPS 356 (413)
Q Consensus 324 ~~~~~~~~r~~~~l~~~g--~~~~gvVvN~v~p~~ 356 (413)
..++..+.++++.+++.+ ....++|+||+.+..
T Consensus 152 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 152 LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS 186 (245)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT
T ss_pred HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC
Confidence 999999999999999988 556899999998764
No 17
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.89 E-value=4e-24 Score=201.52 Aligned_cols=175 Identities=19% Similarity=0.249 Sum_probs=111.1
Q ss_pred cCCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccccCCccccccCCCCCeeeeccChHHH
Q 015096 85 AGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKA 164 (413)
Q Consensus 85 ~~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~ 164 (413)
...+++|+|+|+||||||||+|+|||..||++|+||++||+|++++++.+||.+...+....+.+. +.+
T Consensus 3 ~~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~l~~~~~~~l~~~l~~~---------~~~-- 71 (257)
T 1wcv_1 3 RAKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSGLGVRAERGVYHLLQGE---------PLE-- 71 (257)
T ss_dssp --CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHTTCCCSCCHHHHHTTC---------CGG--
T ss_pred CCCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcCHHHHhCCCCCCCHHHHHcCC---------CHH--
Confidence 346789999999999999999999999999999999999999999999999876421111111100 000
Q ss_pred HHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCCh
Q 015096 165 REEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTG 244 (413)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~ 244 (413)
+.+. . ..+++.++.+.........+.. .+ ..+.+++.. +.||||||||||..
T Consensus 72 -----~~i~-~-~~~l~vlp~~~~~~~~~~~l~~----------~~--------~~l~~~l~~---~~yD~iiiD~pp~~ 123 (257)
T 1wcv_1 72 -----GLVH-P-VDGFHLLPATPDLVGATVELAG----------AP--------TALREALRD---EGYDLVLLDAPPSL 123 (257)
T ss_dssp -----GTCE-E-ETTEEEECCCTTHHHHHHHHTT----------CT--------THHHHHCCC---TTCSEEEEECCSSC
T ss_pred -----HHcc-c-cCCEEEEeCChhHHHHHHHHhh----------HH--------HHHHHHhcc---cCCCEEEEeCCCCC
Confidence 0000 0 1233333332221111100000 00 345555543 57999999999954
Q ss_pred hHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCc
Q 015096 245 HTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTV 324 (413)
Q Consensus 245 ~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~ 324 (413)
...... .+. ..+.+++|+.|+.
T Consensus 124 ~~~~~~--------------------------------------------------------~l~--~aD~viiv~~~~~ 145 (257)
T 1wcv_1 124 SPLTLN--------------------------------------------------------ALA--AAEGVVVPVQAEY 145 (257)
T ss_dssp CHHHHH--------------------------------------------------------HHH--HCSEEEEEEESST
T ss_pred CHHHHH--------------------------------------------------------HHH--HCCeEEEEecCch
Confidence 321100 000 1258999999999
Q ss_pred ccHHHHHHHHHHHHhC------CCCCCeEEEecccCCC
Q 015096 325 MAVSESSRLSESLKKE------NVPVKRLIVNQIIPPS 356 (413)
Q Consensus 325 ~~~~~~~r~~~~l~~~------g~~~~gvVvN~v~p~~ 356 (413)
.++..+.++++.++.. ++++.|+|+|++.+..
T Consensus 146 ~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~ 183 (257)
T 1wcv_1 146 YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRT 183 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCc
Confidence 9999999888888753 5667799999987653
No 18
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.88 E-value=1.8e-24 Score=204.75 Aligned_cols=246 Identities=16% Similarity=0.133 Sum_probs=126.5
Q ss_pred CchhhhhcCCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhcccc-CCccccccCCCCCeee
Q 015096 78 SGFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLT-GGQLVPVEGPDFPLFA 156 (413)
Q Consensus 78 ~~~~~~~~~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~~-~~~~~~v~~~~~~l~~ 156 (413)
.++..+..+.+++|+|+|+||||||||+|+|||.+|| +|+||++||+|+++++..+|+.... .+.... ...+..
T Consensus 17 ~~~~~~~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~----~~~l~~ 91 (267)
T 3k9g_A 17 QGPGSMDNKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGINFT----KFNIYE 91 (267)
T ss_dssp ---------CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTT----TSSHHH
T ss_pred cCcccCCCCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhccccccccCcc----cccHHH
Confidence 3444455567899999999999999999999999999 9999999999999988777764321 000000 000110
Q ss_pred eccChHHHHHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEE
Q 015096 157 LEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRI 236 (413)
Q Consensus 157 ~~~d~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~I 236 (413)
...+. . .+.+.+. ....+++.++.+..+..... . ..+. ....+.+++.. .++.||||
T Consensus 92 ~l~~~-~---~~~~~i~-~~~~~l~~lp~~~~~~~~~~---------~---~~~~-----~~~~l~~~l~~-l~~~yD~v 148 (267)
T 3k9g_A 92 ILKEN-V---DIDSTII-NVDNNLDLIPSYLTLHNFSE---------D---KIEH-----KDFLLKTSLGT-LYYKYDYI 148 (267)
T ss_dssp HHTTS-S---CGGGGCE-EEETTEEEECCCGGGGGTTT---------C---CCTT-----GGGHHHHHHHT-TCTTCSEE
T ss_pred HhcCC-C---CHHHhhc-cCCCCEEEEeCChHHHHHHH---------h---hhhh-----HHHHHHHHHHH-hhcCCCEE
Confidence 00000 0 0000000 11134444444322211100 0 0010 12345555655 35679999
Q ss_pred EEcCCCChhHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceE
Q 015096 237 VFDTAPTGHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEF 316 (413)
Q Consensus 237 ViDtpP~~~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~ 316 (413)
||||||....... ..+.. .+.+
T Consensus 149 iiD~pp~~~~~~~--------------------------------------------------------~~l~~--aD~v 170 (267)
T 3k9g_A 149 VIDTNPSLDVTLK--------------------------------------------------------NALLC--SDYV 170 (267)
T ss_dssp EEEECSSCSHHHH--------------------------------------------------------HHHTT--CSEE
T ss_pred EEECcCCccHHHH--------------------------------------------------------HHHHH--CCeE
Confidence 9999995433110 01111 3589
Q ss_pred EEEEcCCcccHHHHHHHHHHHHhCCCCC-CeEEEecccCCCCCchHHHHHHHHHHHHHHHHhHhcCCCCCCceEEecCCC
Q 015096 317 VIVTIPTVMAVSESSRLSESLKKENVPV-KRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVD 395 (413)
Q Consensus 317 vlVt~p~~~~~~~~~r~~~~l~~~g~~~-~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~~~~P~~~ 395 (413)
++|++|+..++..+.++++.++..+.+. .++|+||+... .......... .....+++.|+++..+........|+..
T Consensus 171 ivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~-~~~~~~~~~l-~~~~~~~~~Ip~~~~~~~a~~~g~~~~~ 248 (267)
T 3k9g_A 171 IIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKN-RTHKTLFEIL-KTKDRFLGTISEREDLNRRIAENNNFDL 248 (267)
T ss_dssp EEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTT-CSCCHHHHHH-TTSTTEEEEEEC----------------
T ss_pred EEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCc-chHHHHHHHH-hcCcccceecCcHHHHHHHHHhcCCcch
Confidence 9999999999999999999999986542 37999999332 2211222111 1123444555655444443333344433
Q ss_pred CCCCCHHHHHHHHHHhh
Q 015096 396 VEIRGVPALRFMGDIIW 412 (413)
Q Consensus 396 ~e~~g~~~L~~l~~~~~ 412 (413)
. .......+++.+.|+
T Consensus 249 ~-~~~~~~~~~i~~~l~ 264 (267)
T 3k9g_A 249 N-KDYIKEYENILEIFL 264 (267)
T ss_dssp C-CHHHHHHHHHHHHHH
T ss_pred h-HHHHHHHHHHHHHHH
Confidence 2 223345556665554
No 19
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.87 E-value=3.2e-23 Score=187.86 Aligned_cols=51 Identities=31% Similarity=0.435 Sum_probs=47.9
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhcc
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQD 138 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~ 138 (413)
|++|+|+|+||||||||+|+|||..|+++|+||++||+|+++++..+++..
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~ 51 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAG 51 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTS
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcC
Confidence 579999999999999999999999999999999999999999998888754
No 20
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=99.87 E-value=8.9e-22 Score=186.05 Aligned_cols=180 Identities=19% Similarity=0.211 Sum_probs=116.6
Q ss_pred hcCCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhhccccCCccccccCCCCCeeeeccChH
Q 015096 84 VAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDLTGGQLVPVEGPDFPLFALEINPE 162 (413)
Q Consensus 84 ~~~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~ 162 (413)
+.+.+++|+|+|+||||||||+|+|||.+||++|+||++||+|+++ +++.+||.+... . +.+. ..+....
T Consensus 14 l~~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~-~---~~~~-~~~~~~~---- 84 (262)
T 2ph1_A 14 LGKIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNAR-I---AVSA-EGLEPVL---- 84 (262)
T ss_dssp HTTCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCC-C---EEET-TEEECEE----
T ss_pred hccCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCcc-c---cccc-cCccccc----
Confidence 3345689999999999999999999999999999999999999997 799999986421 0 0000 0010000
Q ss_pred HHHHHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCC
Q 015096 163 KAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAP 242 (413)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP 242 (413)
....++..++.+...... .+.+ ...+ ......+.+++....++.||||||||||
T Consensus 85 ------------~~~~~l~vlp~~~~~~~~---------~~~~--~~~~---~~~~~~l~~~l~~l~~~~yD~ViID~pp 138 (262)
T 2ph1_A 85 ------------TQKYGIKVMSMQFLLPKE---------NTPV--IWRG---PLIAGMIREFLGRVAWGELDHLLIDLPP 138 (262)
T ss_dssp ------------CTTTCCEEECGGGGSTTC---------SSCC--CCCS---HHHHHHHHHHHHSBCCCSCSEEEEECCS
T ss_pred ------------cCCCCeEEEeccccCCCc---------ccch--hhcC---chHHHHHHHHHHHhhccCCCEEEEECcC
Confidence 011233333332111000 0000 0011 1233455666665333679999999999
Q ss_pred ChhHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcC
Q 015096 243 TGHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIP 322 (413)
Q Consensus 243 ~~~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p 322 (413)
...... + . .+ .+. ..+.+++|+.|
T Consensus 139 ~~~~~~-~--~-~~--------------------------------------------------~~~--~aD~viiv~~~ 162 (262)
T 2ph1_A 139 GTGDAP-L--T-VM--------------------------------------------------QDA--KPTGVVVVSTP 162 (262)
T ss_dssp SSSSHH-H--H-HH--------------------------------------------------HHH--CCSEEEEEECS
T ss_pred CCchHH-H--H-HH--------------------------------------------------hhc--cCCeEEEEecC
Confidence 532100 0 0 00 000 13579999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 323 TVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 323 ~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
+..++..+.++++.+++.++++.|+|+|++.+
T Consensus 163 ~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 163 QELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp SSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred ccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 99999999999999999999999999999864
No 21
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.87 E-value=2.2e-23 Score=196.63 Aligned_cols=171 Identities=20% Similarity=0.219 Sum_probs=112.7
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC-CCcchHhhcccc-CCccccccCCCCCeeeeccChHHHH
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQDLT-GGQLVPVEGPDFPLFALEINPEKAR 165 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~-~~l~~~lg~~~~-~~~~~~v~~~~~~l~~~~~d~~~~~ 165 (413)
+++|+|+|+||||||||+|+|||.+||++|+||++||+|++ ++++.+||.+.. .+....+.+. .+.+..
T Consensus 2 ~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~--------~~~~~~- 72 (263)
T 1hyq_A 2 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGE--------ARIDEA- 72 (263)
T ss_dssp CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTS--------SCGGGG-
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCC--------CcHHHh-
Confidence 47899999999999999999999999999999999999996 699999998753 1111101100 000000
Q ss_pred HHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHH-HHHHHHHHHhcccCCccEEEEcCCCCh
Q 015096 166 EEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIA-ISKVIQFLESQEYSMFTRIVFDTAPTG 244 (413)
Q Consensus 166 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~-~~~l~~~l~~~~~~~yD~IViDtpP~~ 244 (413)
+. ....+++.++.... ....+ +. ...+.+++... .+.||||||||||..
T Consensus 73 ------i~-~~~~~l~~lp~~~~---------------------~~~~~-~~~~~~l~~~l~~l-~~~yD~viiD~~~~~ 122 (263)
T 1hyq_A 73 ------IY-VGPGGVKVVPAGVS---------------------LEGLR-KANPEKLEDVLTQI-MESTDILLLDAPAGL 122 (263)
T ss_dssp ------CE-ECGGGCEEEECCSC---------------------HHHHH-HHCHHHHHHHHHHH-HHTCSEEEEECCSSS
T ss_pred ------he-eCCCCeEEEcCCCC---------------------cChhh-ccChHHHHHHHHHH-HhhCCEEEEeCCCCC
Confidence 00 01122333321100 00111 11 34455555542 356999999999954
Q ss_pred hHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCc
Q 015096 245 HTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTV 324 (413)
Q Consensus 245 ~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~ 324 (413)
.... . . .+. ..+.+++|+.|+.
T Consensus 123 ~~~~-~------~-------------------------------------------------~~~--~ad~vi~v~~~~~ 144 (263)
T 1hyq_A 123 ERSA-V------I-------------------------------------------------AIA--AAQELLLVVNPEI 144 (263)
T ss_dssp SHHH-H------H-------------------------------------------------HHH--HSSEEEEEECSSH
T ss_pred ChHH-H------H-------------------------------------------------HHH--HCCEEEEEeCCCh
Confidence 3210 0 0 000 1247999999999
Q ss_pred ccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 325 MAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 325 ~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
.++..+.++++.+++.+.+..++|+|++.+.
T Consensus 145 ~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 145 SSITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hHHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 9999999999999999989999999998765
No 22
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.86 E-value=1.6e-21 Score=180.72 Aligned_cols=173 Identities=21% Similarity=0.231 Sum_probs=113.9
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC-CCcchHhhcccc-CCccccccCCCCCeeeeccChHHHH
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQDLT-GGQLVPVEGPDFPLFALEINPEKAR 165 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~-~~l~~~lg~~~~-~~~~~~v~~~~~~l~~~~~d~~~~~ 165 (413)
+++|+|+|+||||||||+|+|||.+||++|+||++||+|++ ++++.+||.+.. .+....+.+ ..+.+.
T Consensus 2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~--------~~~~~~-- 71 (237)
T 1g3q_A 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAG--------EANVED-- 71 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTT--------SSCGGG--
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcC--------CCCHHH--
Confidence 47999999999999999999999999999999999999997 699999998652 111100100 000000
Q ss_pred HHHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHH-HHHHHHHHHhcccCCccEEEEcCCCCh
Q 015096 166 EEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIA-ISKVIQFLESQEYSMFTRIVFDTAPTG 244 (413)
Q Consensus 166 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~-~~~l~~~l~~~~~~~yD~IViDtpP~~ 244 (413)
.+......++..++..... ...+ +. ...+.+++.. ..+.||||||||||..
T Consensus 72 -----~i~~~~~~~l~~lp~~~~~---------------------~~~~-~~~~~~l~~~l~~-l~~~yD~viiD~~~~~ 123 (237)
T 1g3q_A 72 -----AIYMTQFDNVYVLPGAVDW---------------------EHVL-KADPRKLPEVIKS-LKDKFDFILIDCPAGL 123 (237)
T ss_dssp -----GCEECSSTTEEEECCCCSH---------------------HHHH-HCCGGGHHHHHHT-TGGGCSEEEEECCSSS
T ss_pred -----HhhcCCCCCEEEEeCCCcc---------------------chhh-hcCHHHHHHHHHH-HHhcCCEEEEECCCCc
Confidence 0000001223333211000 0000 11 2345555655 3467999999999953
Q ss_pred hHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCc
Q 015096 245 HTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTV 324 (413)
Q Consensus 245 ~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~ 324 (413)
.... . ..+. ..+.+++|+.|+.
T Consensus 124 ~~~~-~-------------------------------------------------------~~~~--~ad~vi~v~~~~~ 145 (237)
T 1g3q_A 124 QLDA-M-------------------------------------------------------SAML--SGEEALLVTNPEI 145 (237)
T ss_dssp SHHH-H-------------------------------------------------------HHHT--TCSEEEEEECSCH
T ss_pred CHHH-H-------------------------------------------------------HHHH--HCCeEEEEecCCc
Confidence 3210 0 0111 2358999999999
Q ss_pred ccHHHHHHHHHHHHhCCCCCCeEEEecccCCC
Q 015096 325 MAVSESSRLSESLKKENVPVKRLIVNQIIPPS 356 (413)
Q Consensus 325 ~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~~ 356 (413)
.++..+.++++.+++.|.+..++|+|++.+..
T Consensus 146 ~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 146 SCLTDTMKVGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred ccHHHHHHHHHHHHhCCCceEEEEEecCCccc
Confidence 99999999999999999999999999998754
No 23
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.85 E-value=3.9e-21 Score=190.12 Aligned_cols=49 Identities=33% Similarity=0.486 Sum_probs=45.9
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhh
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFA 136 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg 136 (413)
|++|+|+|+||||||||+|+|||..||+.|+|||+||+|+++++...|.
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~~~l~ 49 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNATQLML 49 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTHHHHS
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChhhhhc
Confidence 5899999999999999999999999999999999999999987777664
No 24
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.85 E-value=3.7e-22 Score=200.26 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=39.4
Q ss_pred CCCcEEEEEeCCCcchhhHHHHHHHHHHH------HCCCCEEEEecCCCCCcchHhhccc
Q 015096 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFA------NNGHPTLVVSTDPAHSLSDSFAQDL 139 (413)
Q Consensus 86 ~~~~~i~v~sgKGGvGKTTvAa~LA~~lA------~~G~rVLlvD~D~~~~l~~~lg~~~ 139 (413)
..+++|+|+|+||||||||+|+|||.+|| +.|+||++||+|++++++.+||.+.
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~~l~~~l~~~~ 168 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASSTMFLDHTH 168 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSSGGGSCC----
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhhhhCCCc
Confidence 46789999999999999999999999999 6799999999999999999998764
No 25
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.85 E-value=1.2e-21 Score=183.98 Aligned_cols=176 Identities=20% Similarity=0.198 Sum_probs=111.7
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC-CCcchHhhccccCCccccccCCCCCeeeeccChHHHHH
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKARE 166 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~-~~l~~~lg~~~~~~~~~~v~~~~~~l~~~~~d~~~~~~ 166 (413)
+++|+|+|+||||||||+|+|||.+||++|+||++||+|++ ++++.+||.+.... . .+....... ..+.
T Consensus 2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~-----~----~l~~~l~~~-~~~~ 71 (260)
T 3q9l_A 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVV-----Y----DFVNVIQGD-ATLN 71 (260)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCC-----S----CHHHHHTTS-SCHH
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCccc-----C----CHHHHhcCC-CChH
Confidence 47999999999999999999999999999999999999995 79999999875310 0 011000000 0011
Q ss_pred HHHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccEEEEcCCCChhH
Q 015096 167 EFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHT 246 (413)
Q Consensus 167 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~IViDtpP~~~~ 246 (413)
+.. .......++..++.+... ..+.+....+.+++.......||||||||||....
T Consensus 72 ~~~--~~~~~~~~l~~lp~~~~~----------------------~~~~~~~~~~~~~l~~l~~~~yD~viiD~p~~~~~ 127 (260)
T 3q9l_A 72 QAL--IKDKRTENLYILPASQTR----------------------DKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIET 127 (260)
T ss_dssp HHC--EECSSSTTEEEECCCSCC----------------------CTTSSCHHHHHHHHHHHHHTTCSEEEEECCSSSSH
T ss_pred Hhe--eccCCCCCEEEecCCCcc----------------------chhhCCHHHHHHHHHHHhccCCCEEEEcCCCCCCH
Confidence 100 000112344444432110 00111223344555442222699999999995332
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccc
Q 015096 247 LRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMA 326 (413)
Q Consensus 247 l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlVt~p~~~~ 326 (413)
.. . ..+. ..+.+++|+.|+..+
T Consensus 128 ~~-~-------------------------------------------------------~~l~--~ad~vi~v~~~~~~s 149 (260)
T 3q9l_A 128 GA-L-------------------------------------------------------MALY--FADEAIITTNPEVSS 149 (260)
T ss_dssp HH-H-------------------------------------------------------HHHH--TCSEEEEEECSSHHH
T ss_pred HH-H-------------------------------------------------------HHHH--hCCEEEEEecCChhH
Confidence 10 0 0111 235899999999999
Q ss_pred HHHHHHHHHHHHhCCC--------CCCeEEEecccCC
Q 015096 327 VSESSRLSESLKKENV--------PVKRLIVNQIIPP 355 (413)
Q Consensus 327 ~~~~~r~~~~l~~~g~--------~~~gvVvN~v~p~ 355 (413)
+..+.++++.++..+. ...++|+|++.+.
T Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~ 186 (260)
T 3q9l_A 150 VRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (260)
T ss_dssp HHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHH
T ss_pred HHHHHHHHHHHHHhccccccccCCcceEEEEecCCcc
Confidence 9999999999998763 4579999998643
No 26
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.85 E-value=4.8e-22 Score=191.12 Aligned_cols=190 Identities=13% Similarity=0.110 Sum_probs=116.4
Q ss_pred hhhhhcCCCcEEEEEe--CCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccccCCccccccCCCCCeeee
Q 015096 80 FDEMVAGTQRKYYMLG--GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFAL 157 (413)
Q Consensus 80 ~~~~~~~~~~~i~v~s--gKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~~~~~~~~v~~~~~~l~~~ 157 (413)
++.++....++|+|++ +||||||||+|+|||..||++|+||++||+|++++++.+++.......+. ..+.
T Consensus 26 ~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~------~~l~-- 97 (298)
T 2oze_A 26 LRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPR------VNFY-- 97 (298)
T ss_dssp HHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCS------SCHH--
T ss_pred HHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCc------ccHH--
Confidence 3444444567899998 89999999999999999999999999999999988776664321100000 0010
Q ss_pred ccChHHHHHH--HHhhhhccCCcchhhhhcccchhhHHHHHhhhhcccccCCCCCCHHHHHHHHHHHHHHHhcccCCccE
Q 015096 158 EINPEKAREE--FRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTR 235 (413)
Q Consensus 158 ~~d~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~ 235 (413)
..+.. ..+.+. ....+++.++.+..+.... .+.. ..........+.+++.. ..+.|||
T Consensus 98 -----~~l~~~~~~~~~~-~~~~~l~vlp~~~~~~~~~-~l~~------------~~~~~~~~~~l~~~l~~-l~~~yD~ 157 (298)
T 2oze_A 98 -----EGLKNGNLASSIV-HLTDNLDLIPGTFDLMLLP-KLTR------------SWTFENESRLLATLLAP-LKSDYDL 157 (298)
T ss_dssp -----HHHHHTCCGGGCE-ESSSSEEEECCCGGGGGHH-HHTT------------TSCHHHHHTHHHHHHGG-GGGGCSE
T ss_pred -----HHHhcCChhhhhc-ccCCCeEEEeCCchHHHHH-HHhh------------hhccccHHHHHHHHHHH-HhcCCCE
Confidence 00000 000000 1123455554443222111 0000 00001122345566665 3467999
Q ss_pred EEEcCCCChhHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccchhhHHHHHHHHHHHHHHHHHHhcCCCCce
Q 015096 236 IVFDTAPTGHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTE 315 (413)
Q Consensus 236 IViDtpP~~~~l~~l~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~ 315 (413)
|||||||........ .+. ..+.
T Consensus 158 IiiD~pp~~~~~~~~--------------------------------------------------------~l~--~aD~ 179 (298)
T 2oze_A 158 IIIDTVPTPSVYTNN--------------------------------------------------------AIV--ASDY 179 (298)
T ss_dssp EEEEECSSCSHHHHH--------------------------------------------------------HHH--HCSE
T ss_pred EEEECCCCccHHHHH--------------------------------------------------------HHH--HCCe
Confidence 999999965432100 000 1358
Q ss_pred EEEEEcCCcccHHHHHHHHHHHHhC------CCCCCeEEEecccCC
Q 015096 316 FVIVTIPTVMAVSESSRLSESLKKE------NVPVKRLIVNQIIPP 355 (413)
Q Consensus 316 ~vlVt~p~~~~~~~~~r~~~~l~~~------g~~~~gvVvN~v~p~ 355 (413)
+++|+.|+..++..+.++++.++.. ++++.|+|+|++.+.
T Consensus 180 viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 180 VMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp EEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred EEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 9999999999999999999998873 778889999998765
No 27
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.84 E-value=3.2e-21 Score=193.14 Aligned_cols=54 Identities=26% Similarity=0.303 Sum_probs=49.8
Q ss_pred CCCcEEEEEeCCCcchhhHHHHHHHHHHHH------CCCCEEEEecCCCCCcchHhhccc
Q 015096 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFAN------NGHPTLVVSTDPAHSLSDSFAQDL 139 (413)
Q Consensus 86 ~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~------~G~rVLlvD~D~~~~l~~~lg~~~ 139 (413)
..+++|+|+|+||||||||+|+|||.+||. .|+||++||+|++++++.+||.+.
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~~l~~~l~~~~ 165 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFLSHKH 165 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTCHHHHHHSCHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhHHhCCcc
Confidence 357899999999999999999999999994 699999999999999999998764
No 28
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.83 E-value=1.2e-21 Score=185.34 Aligned_cols=48 Identities=27% Similarity=0.466 Sum_probs=42.5
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhh
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFA 136 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg 136 (413)
|++|+| ++||||||||+|+|||.+||++|+||++||+|++++...+++
T Consensus 1 M~vI~v-s~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~ 48 (269)
T 1cp2_A 1 MRQVAI-YGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLL 48 (269)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHH
T ss_pred CcEEEE-ecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhc
Confidence 468888 689999999999999999999999999999999986555544
No 29
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.83 E-value=1.7e-21 Score=178.13 Aligned_cols=48 Identities=33% Similarity=0.380 Sum_probs=45.1
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhc
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQ 137 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~ 137 (413)
++|+|+|+||||||||+|+|||..|+++| ||++||+|++++++.+++.
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~ 48 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKR 48 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHH
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcC
Confidence 47999999999999999999999999999 9999999999988888875
No 30
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.81 E-value=4.6e-20 Score=176.58 Aligned_cols=48 Identities=27% Similarity=0.499 Sum_probs=43.1
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhh
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFA 136 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg 136 (413)
|++|+| ++||||||||+|+|||.+||++|+||++||+|++++...+++
T Consensus 2 MkvIav-s~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~ 49 (289)
T 2afh_E 2 MRQCAI-YGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLIL 49 (289)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHH
T ss_pred ceEEEE-eCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhc
Confidence 578888 689999999999999999999999999999999986666554
No 31
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.81 E-value=1.3e-21 Score=187.40 Aligned_cols=52 Identities=23% Similarity=0.303 Sum_probs=48.4
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC-CCCcchHhhccc
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP-AHSLSDSFAQDL 139 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~-~~~l~~~lg~~~ 139 (413)
+++|+|+|+||||||||+|+|||..||++|+||++||+|+ +++++.+|+...
T Consensus 4 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~ 56 (286)
T 2xj4_A 4 TRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRR 56 (286)
T ss_dssp CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCCh
Confidence 3689999999999999999999999999999999999999 789999998653
No 32
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.79 E-value=8.5e-20 Score=181.30 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=51.0
Q ss_pred CCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhcccc
Q 015096 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLT 140 (413)
Q Consensus 86 ~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~~ 140 (413)
+.+++|+|+|+||||||||+|+|||.+||++|+||++||+|++++++.+||.+..
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~~~~l~~~lg~~~~ 195 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDVFFQAEGN 195 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCTTCCHHHHCCCSCS
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHcCCCCC
Confidence 4679999999999999999999999999999999999999977899999998753
No 33
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.72 E-value=5.7e-17 Score=148.81 Aligned_cols=41 Identities=10% Similarity=0.297 Sum_probs=37.8
Q ss_pred eEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 315 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 315 ~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
.+++|+.++..++.++.+.++.++..++++.|+|+|++.+.
T Consensus 140 ~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 140 PVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 180 (224)
T ss_dssp CEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSC
T ss_pred CEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCc
Confidence 48999999999999999999999999999999999998765
No 34
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.47 E-value=2e-13 Score=137.47 Aligned_cols=42 Identities=29% Similarity=0.328 Sum_probs=37.6
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHC-CCCEEEEecCCCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDPAHS 130 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~-G~rVLlvD~D~~~~ 130 (413)
.++|+|+ ||||+||||++++||.+++++ |+||++||+|++++
T Consensus 100 ~~vI~iv-G~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~ 142 (433)
T 2xxa_A 100 PAVVLMA-GLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRP 142 (433)
T ss_dssp SEEEEEE-CSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSST
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 4566666 899999999999999999999 99999999999863
No 35
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.38 E-value=1.7e-12 Score=124.63 Aligned_cols=42 Identities=26% Similarity=0.314 Sum_probs=37.1
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS 130 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~ 130 (413)
+++|++ .|++|+||||++.+||..++.+|++|+++|+|++++
T Consensus 98 ~~vi~i-~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 98 PYVIML-VGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp SEEEEE-ECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 345555 489999999999999999999999999999999864
No 36
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.36 E-value=1.4e-11 Score=119.39 Aligned_cols=42 Identities=26% Similarity=0.438 Sum_probs=37.3
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
.+++|+|+| .+|+||||++.+||..++..|++|+++|+|+++
T Consensus 104 ~~~vI~ivG-~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r 145 (320)
T 1zu4_A 104 RLNIFMLVG-VNGTGKTTSLAKMANYYAELGYKVLIAAADTFR 145 (320)
T ss_dssp SCEEEEEES-STTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred CCeEEEEEC-CCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 456777775 599999999999999999999999999999875
No 37
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.31 E-value=9.9e-12 Score=119.15 Aligned_cols=42 Identities=31% Similarity=0.598 Sum_probs=38.1
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
.+++|+++ |++|+||||++.+||..++..|.+|+++|+|+++
T Consensus 97 ~~~~i~i~-g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 97 DRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp SSEEEEEE-CCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 44677777 8999999999999999999999999999999986
No 38
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=99.25 E-value=4e-11 Score=120.08 Aligned_cols=42 Identities=31% Similarity=0.598 Sum_probs=37.4
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
.+++|+++ |++|+||||++.+||..++..|++|+++|+|+++
T Consensus 97 ~~~vi~i~-G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 97 DRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp SSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 34566666 8999999999999999999999999999999986
No 39
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.23 E-value=6.5e-11 Score=110.70 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=40.0
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS 130 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~ 130 (413)
....+++++|||||||||++.+||..++ .|+||++||+|++.+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~ 54 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVK 54 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCcc
Confidence 4468999999999999999999999999 999999999999964
No 40
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=99.18 E-value=3e-10 Score=105.53 Aligned_cols=45 Identities=22% Similarity=0.233 Sum_probs=36.6
Q ss_pred hhhhhcCCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 80 FDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 80 ~~~~~~~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
-++.+...++.|.|++...|||||++++.|+.+|+++|++|..+-
T Consensus 13 ~~~~~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 13 GRENLYFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp ------CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred hhhHHhhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 344555667899999999999999999999999999999999874
No 41
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=99.17 E-value=6.5e-11 Score=109.18 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=38.4
Q ss_pred eEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 315 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 315 ~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
.+++|+.+...++..+...++.++..|+++.|+|+|++.+.
T Consensus 142 pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~ 182 (228)
T 3of5_A 142 PVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSN 182 (228)
T ss_dssp CEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTT
T ss_pred CEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCc
Confidence 58999999999999999999999999999999999998765
No 42
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.16 E-value=7.9e-11 Score=118.20 Aligned_cols=40 Identities=33% Similarity=0.389 Sum_probs=35.7
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
.++++.|.+|+||||++++||.+++++|+||++|++|+.+
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 4555567799999999999999999999999999999975
No 43
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.09 E-value=6.9e-10 Score=113.45 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=36.6
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS 130 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~ 130 (413)
.++|+|+ |.+||||||++.+||.+++++|+||++||+|+++.
T Consensus 101 ~~vI~iv-G~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~ 142 (504)
T 2j37_W 101 QNVIMFV-GLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRA 142 (504)
T ss_dssp -EEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSS
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 3456665 78999999999999999999999999999999863
No 44
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=99.04 E-value=8e-10 Score=100.95 Aligned_cols=48 Identities=21% Similarity=0.183 Sum_probs=43.1
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchH
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDS 134 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~ 134 (413)
.++..+|+++||||||||++.++|..++++|++|+++|+|++++...+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~ 51 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETE 51 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHH
Confidence 456779999999999999999999999999999999999998765543
No 45
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=99.01 E-value=1.6e-09 Score=101.18 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=37.5
Q ss_pred eEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 315 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 315 ~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
.+++|+.++..++..+...++.++..|+++.|+|+|++..
T Consensus 159 pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~~ 198 (251)
T 3fgn_A 159 AALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWPD 198 (251)
T ss_dssp EEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEECS
T ss_pred CEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCCC
Confidence 6999999999999999999999999999999999999853
No 46
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.01 E-value=1.3e-09 Score=109.76 Aligned_cols=40 Identities=28% Similarity=0.391 Sum_probs=36.0
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
++|+|+ |.+|+||||++.+||..++++|+||++||+|+++
T Consensus 100 ~vI~iv-G~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 100 NVILLV-GIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp CCEEEE-CCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 456665 5799999999999999999999999999999986
No 47
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.00 E-value=4.8e-09 Score=100.83 Aligned_cols=42 Identities=24% Similarity=0.430 Sum_probs=36.5
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
.+++|++++ .+|+||||++.+||..++..|++|+++|+|+++
T Consensus 103 ~~~vi~ivG-~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 103 PPFVIMVVG-VNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp SCEEEEEEC-CTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCeEEEEEc-CCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 345666665 599999999999999999999999999999875
No 48
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.00 E-value=1.4e-09 Score=109.09 Aligned_cols=41 Identities=32% Similarity=0.331 Sum_probs=36.6
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
..++++.|++|+||||++++||..++.+|++|+++|+|+.+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 35666669999999999999999999999999999999864
No 49
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.93 E-value=8.5e-09 Score=98.68 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=36.1
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHH-CCCCEEEEecCCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPAH 129 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~-~G~rVLlvD~D~~~ 129 (413)
.+++++++ |.+|+||||++.+||..++. +|++|+++|+|+++
T Consensus 104 ~g~vi~lv-G~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r 146 (296)
T 2px0_A 104 HSKYIVLF-GSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR 146 (296)
T ss_dssp CSSEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence 34566666 56999999999999999995 89999999999974
No 50
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.75 E-value=1.1e-07 Score=93.34 Aligned_cols=42 Identities=26% Similarity=0.499 Sum_probs=34.6
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS 130 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~ 130 (413)
..+++++|++|+||||++.+|+..++..|+||+++|.||+..
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~ 120 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSST 120 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 345566789999999999999999999999999999999853
No 51
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=98.23 E-value=1.2e-06 Score=87.26 Aligned_cols=50 Identities=24% Similarity=0.242 Sum_probs=47.0
Q ss_pred CCcEEEEEeCCC---cchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhhccc
Q 015096 87 TQRKYYMLGGKG---GVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDL 139 (413)
Q Consensus 87 ~~~~i~v~sgKG---GvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg~~~ 139 (413)
..++|.|+|..+ |+||||+|+|||.+||+.|+||+++ +|. +++..||.+.
T Consensus 56 ~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi---LR~Psl~~~FGikg 109 (557)
T 3pzx_A 56 DGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC---LREPSLGPSFGIKG 109 (557)
T ss_dssp CCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE---ECCCCSHHHHHTCC
T ss_pred CCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE---eCCCCccccCCCCC
Confidence 568999999999 9999999999999999999999999 885 9999999985
No 52
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.99 E-value=6.8e-05 Score=75.99 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=34.2
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
+.+|++ -|.+|+||||+...||..+...|.+|++.+.|..+
T Consensus 293 GeVI~L-VGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 293 PFVILM-VGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 333 (503)
T ss_dssp TEEEEE-ECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred CeEEEE-ECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence 344544 48899999999999999999889999999998754
No 53
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.81 E-value=8e-05 Score=66.32 Aligned_cols=37 Identities=27% Similarity=0.287 Sum_probs=33.7
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.|.|+.|+| .||||.|..+|..++.+|+||+++-...
T Consensus 30 ~i~v~tG~G-kGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 30 IIIVFTGNG-KGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp CEEEEESSS-SCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred eEEEECCCC-CCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 577788887 9999999999999999999999998765
No 54
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.81 E-value=0.00014 Score=70.14 Aligned_cols=41 Identities=29% Similarity=0.387 Sum_probs=35.5
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
..++.+.|..|+||||+...||..+...|.+|++++.|..+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r 169 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFR 169 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccc
Confidence 34555568899999999999999999999999999999764
No 55
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.78 E-value=0.00039 Score=66.40 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=35.6
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
+.+++++ |.+|+||||+...||..+...|.+|++.+.|..+
T Consensus 102 g~vi~lv-G~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r 142 (304)
T 1rj9_A 102 GRVVLVV-GVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR 142 (304)
T ss_dssp SSEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCC
Confidence 4566666 7899999999999999999889999999999754
No 56
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=97.42 E-value=0.0012 Score=71.57 Aligned_cols=40 Identities=15% Similarity=0.052 Sum_probs=36.5
Q ss_pred eEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 315 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 315 ~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
-+++|+.....++..+.-.++.++..|+++.|+|+|++.+
T Consensus 233 PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~~ 272 (831)
T 4a0g_A 233 PGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGL 272 (831)
T ss_dssp CEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCSS
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCch
Confidence 4899999999999999999999999999999999998653
No 57
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=97.40 E-value=0.0024 Score=61.82 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=34.5
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
+.+++.+++.--.|||||++..|..++.++|.++..+=
T Consensus 151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~ 188 (349)
T 2obn_A 151 PCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLA 188 (349)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEe
Confidence 46789999999999999999999999999999988844
No 58
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.15 E-value=0.0051 Score=59.97 Aligned_cols=41 Identities=27% Similarity=0.372 Sum_probs=34.3
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
+.++++ -|..|+||||+...||..+...+.+|++.+.|..+
T Consensus 157 g~vi~l-vG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 157 PAVIMI-VGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp SEEEEE-ECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CeEEEE-EcCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence 344544 47899999999999999999889999999998754
No 59
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.10 E-value=0.0065 Score=57.75 Aligned_cols=41 Identities=27% Similarity=0.372 Sum_probs=34.2
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
+.++++ -|..|+||||+...||..+...+.+|++.+.|..+
T Consensus 100 g~vi~l-vG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 100 PAVIMI-VGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 140 (302)
T ss_dssp CEEEEE-ECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CcEEEE-EcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 344544 47899999999999999999888999999988754
No 60
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.04 E-value=0.00048 Score=67.25 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=41.5
Q ss_pred cCCchhhhhc-C--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 76 AVSGFDEMVA-G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 76 ~~~~~~~~~~-~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+...++.++. + ....++++.|++|+||||+|.++|..++..|.+|++||++..
T Consensus 47 G~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s 102 (356)
T 1u94_A 47 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 102 (356)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3455666664 1 223466666999999999999999999999999999999643
No 61
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.01 E-value=0.00068 Score=59.30 Aligned_cols=39 Identities=31% Similarity=0.262 Sum_probs=34.8
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
..++++.|..|+||||++..||..+...|.+|.++|.|.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 356677799999999999999999999999999999874
No 62
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.95 E-value=0.001 Score=64.51 Aligned_cols=41 Identities=20% Similarity=0.398 Sum_probs=35.5
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
..+|++ .|++|+||||+..+|+..++..|.+|.+++.|++.
T Consensus 56 ~~~i~i-~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 56 TLRLGV-TGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp SEEEEE-EECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred CEEEEE-EcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 345554 57999999999999999999999999999999985
No 63
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.91 E-value=0.0011 Score=57.66 Aligned_cols=41 Identities=15% Similarity=0.120 Sum_probs=33.8
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
++++.|+ |..|+||||++..|+..|..+|++|.++..|+..
T Consensus 4 ~~~i~i~-G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~ 44 (169)
T 1xjc_A 4 MNVWQVV-GYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 44 (169)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCC
Confidence 3455555 5779999999999999999999999999998863
No 64
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.70 E-value=0.002 Score=58.52 Aligned_cols=53 Identities=26% Similarity=0.465 Sum_probs=41.4
Q ss_pred cCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 76 AVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 76 ~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+...++.++.+ ....+.++.|.+|+||||++.++|..++..|.+|+.++++..
T Consensus 8 G~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 8 GIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp CCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred CchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 34556666542 223466667899999999999999999999999999999865
No 65
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.68 E-value=0.0015 Score=60.59 Aligned_cols=38 Identities=29% Similarity=0.439 Sum_probs=33.8
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.++++.|-+|+||||+|..|+..|...|..++++|.|.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~ 42 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL 42 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH
Confidence 46777799999999999999999998999999888874
No 66
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.46 E-value=0.0025 Score=61.00 Aligned_cols=53 Identities=21% Similarity=0.364 Sum_probs=42.9
Q ss_pred cCCchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 76 AVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 76 ~~~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
++..++.++.+ ....++++.|.+|+||||++.++|..++.+|.+|+.+++...
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s 107 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 107 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 44566666642 234577888999999999999999999999999999998754
No 67
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=96.40 E-value=0.048 Score=55.79 Aligned_cols=41 Identities=27% Similarity=0.359 Sum_probs=37.6
Q ss_pred CcEEEEE-eCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYML-GGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~-sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
++.|.|+ +.-.|+||++++++|+..|.++|+||..+=.||.
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py 44 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPY 44 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECC
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeecccc
Confidence 3678888 6689999999999999999999999999999987
No 68
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.39 E-value=0.004 Score=56.52 Aligned_cols=53 Identities=34% Similarity=0.577 Sum_probs=41.9
Q ss_pred cCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHH-HCCCCEEEEecCCC
Q 015096 76 AVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTDPA 128 (413)
Q Consensus 76 ~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA-~~G~rVLlvD~D~~ 128 (413)
+...++.++.+ ....+.++.|.+|+|||++|.++|...+ +.|.+|+.++++..
T Consensus 15 Gi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 15 GIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp SCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred CcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence 55677877753 3345777789999999999999998755 55889999999865
No 69
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.39 E-value=0.011 Score=56.58 Aligned_cols=51 Identities=10% Similarity=0.189 Sum_probs=39.5
Q ss_pred cCCchhhhhc----C--CCcEEEEEeCCCcchhhHHHHHHHHHHHHC--CCCEEEEecCC
Q 015096 76 AVSGFDEMVA----G--TQRKYYMLGGKGGVGKTSCAASLAVKFANN--GHPTLVVSTDP 127 (413)
Q Consensus 76 ~~~~~~~~~~----~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~--G~rVLlvD~D~ 127 (413)
+...|+.++. + ... +..+.|-.|+||||++..++..+++. |.+|+.||+.-
T Consensus 10 Gi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 10 KIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp SCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred CCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 3456676666 2 223 56777899999999999999999886 88999999853
No 70
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.37 E-value=0.0026 Score=55.28 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=32.1
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.++++.|-.|+||||++..|+..+...|.++..++.|
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 3567779999999999999999999889999888753
No 71
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.36 E-value=0.0028 Score=63.73 Aligned_cols=55 Identities=20% Similarity=0.355 Sum_probs=44.8
Q ss_pred ccCCchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 75 EAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 75 ~~~~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
.++..++.++.+ ....++++.|.+|+||||++.++|..++.+|.+|+++++....
T Consensus 182 TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~ 237 (444)
T 3bgw_A 182 SGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGK 237 (444)
T ss_dssp CSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCT
T ss_pred CCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCH
Confidence 355667777653 2345788889999999999999999999999999999998754
No 72
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.35 E-value=0.0032 Score=61.57 Aligned_cols=52 Identities=19% Similarity=0.251 Sum_probs=40.8
Q ss_pred cCCchhhhhc-C---CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 76 AVSGFDEMVA-G---TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 76 ~~~~~~~~~~-~---~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+...++.++. + .+. ++++.|.+|+||||+|.++|..++..|.+|++||++..
T Consensus 58 G~~~LD~~Lg~GGl~~G~-li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s 113 (366)
T 1xp8_A 58 GSLSLDLALGVGGIPRGR-ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA 113 (366)
T ss_dssp SCHHHHHHTSSSSEETTS-EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CCHHHHHHhCCCCccCCc-EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 3455666665 1 334 44556899999999999999999999999999999854
No 73
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.28 E-value=0.0037 Score=60.39 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=41.1
Q ss_pred CchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 78 SGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 78 ~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
..|+.++.+ ..--++++.|.+|+||||++.++|..++..|.+|+++++....
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~ 86 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSA 86 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCH
Confidence 444444432 2235777889999999999999999999999999999998653
No 74
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.25 E-value=0.0032 Score=56.21 Aligned_cols=39 Identities=18% Similarity=0.051 Sum_probs=32.1
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
..+++.|.+|+||||+..+|+..+... ++|.+|+.|+..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~ 69 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVS 69 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCC
Confidence 345555899999999999999988655 899999998853
No 75
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.14 E-value=0.0036 Score=55.75 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=36.7
Q ss_pred Cchhhhhc-C-CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 78 SGFDEMVA-G-TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 78 ~~~~~~~~-~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
..++.++. + ....++++.|++|+||||++.++|. ..|.+|+++|++.+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~ 56 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGG 56 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCC
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCC
Confidence 44555554 1 2345777779999999999999998 56889999998763
No 76
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.98 E-value=0.0089 Score=52.03 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=34.7
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
..+++++|..|+||||+...|...+...|++|..+..|++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 34556678999999999999999999999999999988753
No 77
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.97 E-value=0.0083 Score=53.14 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=35.3
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
..++.+.|..|+||||++..|+..+...|.+|.+++.|...
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 45677779999999999999999998888899999988653
No 78
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.93 E-value=0.0064 Score=61.92 Aligned_cols=53 Identities=11% Similarity=0.246 Sum_probs=44.0
Q ss_pred cCCchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHHHC-CCCEEEEecCCC
Q 015096 76 AVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDPA 128 (413)
Q Consensus 76 ~~~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~-G~rVLlvD~D~~ 128 (413)
++..++.++.+ ....++++.|.+|+||||++.++|..++.+ |.+|+++++...
T Consensus 228 G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 228 GCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES 282 (503)
T ss_dssp SCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred chhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence 56777777753 234577888999999999999999999987 999999999865
No 79
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=95.92 E-value=0.12 Score=52.96 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=37.4
Q ss_pred CcEEEEE-eCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYML-GGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~-sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+|.|.|+ +.-.|+||+.++++|+..|.++|+||..+=.||.
T Consensus 12 ~~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py 53 (550)
T 1vco_A 12 RKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPY 53 (550)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECS
T ss_pred eeEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeecccc
Confidence 3678888 6679999999999999999999999999999987
No 80
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.91 E-value=0.0072 Score=58.66 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=40.1
Q ss_pred CCchhhhhc-C--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 77 VSGFDEMVA-G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 77 ~~~~~~~~~-~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
...++..+. + ....++.+.|.+|+||||++.+++..++..|.+|+++|++.
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 355666665 2 12345556689999999999999999999999999999974
No 81
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.82 E-value=0.0079 Score=52.98 Aligned_cols=36 Identities=36% Similarity=0.398 Sum_probs=31.0
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
.-+++.|.+|+||||++..++..+...|.+++.+++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 345566999999999999999999988999988875
No 82
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.79 E-value=0.0089 Score=53.41 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=33.8
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.++++.|..|+||||++..++..++..|.+|++++.+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES 62 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence 355566999999999999999988888889999998864
No 83
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.79 E-value=0.011 Score=52.99 Aligned_cols=39 Identities=10% Similarity=0.045 Sum_probs=33.6
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
...+++.|..|+||||++..+|..+...|.++..++++.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 345566799999999999999999999999999999753
No 84
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.78 E-value=0.0064 Score=55.92 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=32.5
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHC-----CCCEEEEecCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANN-----GHPTLVVSTDPA 128 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~-----G~rVLlvD~D~~ 128 (413)
+.++.+.|-.|+||||+|..||..+... |++|+++|+|--
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~ 66 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF 66 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcc
Confidence 4566677999999999999999877542 678999999853
No 85
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.75 E-value=0.0082 Score=53.52 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=33.9
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHH-HCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA-~~G~rVLlvD~D~ 127 (413)
...++++.|..|+||||++..|+..+. ..|.++..+|.|.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 345666679999999999999999998 7899999999764
No 86
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.73 E-value=0.0095 Score=59.69 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=42.8
Q ss_pred ccCCchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHHH-CCCCEEEEecCCC
Q 015096 75 EAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPA 128 (413)
Q Consensus 75 ~~~~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA~-~G~rVLlvD~D~~ 128 (413)
.++..++.++.+ ....++++.|.+|+||||++.++|...+. .|.+|+++++...
T Consensus 185 tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~ 240 (444)
T 2q6t_A 185 TGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP 240 (444)
T ss_dssp CSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC
T ss_pred CCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 345567777643 23457777899999999999999999997 5899999999765
No 87
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=95.73 E-value=0.027 Score=59.80 Aligned_cols=41 Identities=20% Similarity=0.087 Sum_probs=33.1
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
+.+++|..+.......+...+..+...++++. +|+|++...
T Consensus 107 D~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~i-lviNKiD~~ 147 (704)
T 2rdo_7 107 DGAVMVYCAVGGVQPQSETVWRQANKYKVPRI-AFVNKMDRM 147 (704)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEeCCCcc
Confidence 57899998877666778888888888898864 889998654
No 88
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.70 E-value=0.011 Score=57.49 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=40.5
Q ss_pred CCchhhhhc-C--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 77 VSGFDEMVA-G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 77 ~~~~~~~~~-~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
...++.++. + ....++.+.|.+|+||||++.++|..++..|.+|+.||+...
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 355666665 2 223456666789999999999999999999999999998654
No 89
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.66 E-value=0.0071 Score=52.43 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=30.4
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.++++.|-.|+||||++..||..+...|.+.-.+|.|
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 3677789999999999999999998888656666643
No 90
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.64 E-value=0.013 Score=51.63 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=33.2
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
..++++.|..|+||||++..||..+...|..+..+|.|.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 356666699999999999999999988888878899774
No 91
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.58 E-value=0.013 Score=50.61 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=32.4
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.++++.|..|+||||++..|+..+...|.+++.+|.|.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 34556699999999999999999887899999888764
No 92
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.57 E-value=0.008 Score=56.75 Aligned_cols=40 Identities=18% Similarity=0.360 Sum_probs=31.3
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
.++.++|-.|+||||+|..|+..+...|.++.+||+|--.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 4566668999999999999999888778899999999754
No 93
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.56 E-value=0.01 Score=53.13 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=31.1
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+|+++ |.+||||||+..+++..+... .++..|+.|+.
T Consensus 39 ~~i~iv-G~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~ 76 (226)
T 2hf9_A 39 VAFDFM-GAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVI 76 (226)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETT
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHhccC-CeEEEEECCCC
Confidence 445555 889999999999999887655 78999998875
No 94
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.54 E-value=0.0076 Score=51.80 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=27.7
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.+++++|-.|+||||++..||..+ |...+.+|.|
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccc
Confidence 477888999999999999998766 4566667776
No 95
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.53 E-value=0.013 Score=58.81 Aligned_cols=53 Identities=21% Similarity=0.370 Sum_probs=41.9
Q ss_pred cCCchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHHH-CCCCEEEEecCCC
Q 015096 76 AVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPA 128 (413)
Q Consensus 76 ~~~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA~-~G~rVLlvD~D~~ 128 (413)
++..++.++.+ ....++++.|.+|+||||++.++|..++. .|.+|++++....
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s 243 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS 243 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 44556666642 23457777899999999999999999986 6899999998865
No 96
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.42 E-value=0.011 Score=51.17 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=28.9
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHH-HCCCCEEEEe
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVS 124 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA-~~G~rVLlvD 124 (413)
.++++.|..|+||||++..++..+. ..|.+++.++
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4556679999999999999999997 6787776655
No 97
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=95.29 E-value=0.26 Score=45.06 Aligned_cols=43 Identities=23% Similarity=0.371 Sum_probs=39.3
Q ss_pred CCCcEEEEEeCC-CcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 86 GTQRKYYMLGGK-GGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 86 ~~~~~i~v~sgK-GGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
..+|-|.|++|- .|.||-.+|++++..|..+|++|-.+=.||.
T Consensus 21 ~~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~KiDPY 64 (294)
T 2c5m_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPY 64 (294)
T ss_dssp CCCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECCEEECB
T ss_pred eceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEEecCCc
Confidence 356888888886 9999999999999999999999999999997
No 98
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.25 E-value=0.021 Score=49.45 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=28.9
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
++++.|-.|+||||+|..|+..+...|..++-.|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4566799999999999999999988898876555
No 99
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.16 E-value=0.015 Score=49.71 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=26.7
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+.++++.|-.|+||||+|..|+.. ......+|.|
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d 35 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK----NPGFYNINRD 35 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH----STTEEEECHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHH
Confidence 467888899999999999998862 2346777775
No 100
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.15 E-value=0.023 Score=49.41 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=29.1
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
++++.|-.|+||||++..|+..+...|.+|+..+-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 45667999999999999999999999999876654
No 101
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.15 E-value=0.015 Score=59.81 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=34.8
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
..++++.|..|+||||+|..|+..+...|+++.++|.|.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 356677799999999999999999999999999999884
No 102
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.09 E-value=0.035 Score=52.66 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=27.7
Q ss_pred ceEEEEEcCCcc-cHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 314 TEFVIVTIPTVM-AVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 314 t~~vlVt~p~~~-~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
+.+++|..+... +..+....++.++..+.|+ -+|+|++.-
T Consensus 94 D~il~VvD~~~~~~~~~~~~~~~~l~~~~~pv-ilV~NK~Dl 134 (308)
T 3iev_A 94 DVILFMIDATEGWRPRDEEIYQNFIKPLNKPV-IVVINKIDK 134 (308)
T ss_dssp SEEEEEEETTTBSCHHHHHHHHHHTGGGCCCE-EEEEECGGG
T ss_pred CEEEEEEeCCCCCCchhHHHHHHHHHhcCCCE-EEEEECccC
Confidence 478888887653 4444333388888888876 489999754
No 103
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=95.08 E-value=0.068 Score=54.75 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=32.7
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
+.+++|..+.......+..+++.+...++++ -+|+|++...
T Consensus 107 D~~IlVvDa~~g~~~~t~~~~~~~~~~~ipi-ivviNK~Dl~ 147 (529)
T 2h5e_A 107 DCCLMVIDAAKGVEDRTRKLMEVTRLRDTPI-LTFMNKLDRD 147 (529)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHTTTTCCE-EEEEECTTSC
T ss_pred CEEEEEEeCCccchHHHHHHHHHHHHcCCCE-EEEEcCcCCc
Confidence 5789998887655667788888888889985 6899998654
No 104
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.07 E-value=0.02 Score=54.51 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=31.5
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHH-HCCCCEEEEec
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVST 125 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA-~~G~rVLlvD~ 125 (413)
.-+++.|..|+|||++|.++|..+. ..|.+|+.+.+
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 3455669999999999999999999 99999998876
No 105
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.04 E-value=0.026 Score=51.10 Aligned_cols=35 Identities=17% Similarity=0.029 Sum_probs=32.5
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
.+.++.|-.|.||||.+..++..++.+|++|+++.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 57788899999999999999999999999999994
No 106
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.01 E-value=0.028 Score=47.36 Aligned_cols=36 Identities=14% Similarity=0.294 Sum_probs=30.7
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
++++.|..|+||||++..++..+...|+++..++..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 445569999999999999999998889888888863
No 107
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.96 E-value=0.012 Score=56.28 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=40.1
Q ss_pred ccCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHC------CCCEEEEecCC
Q 015096 75 EAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANN------GHPTLVVSTDP 127 (413)
Q Consensus 75 ~~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~------G~rVLlvD~D~ 127 (413)
.+...++.++.+ ....++.+.|.+|+||||++.++|...+.. |.+|+.||++.
T Consensus 91 TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 91 TGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp CSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 344567777642 223466677899999999999999987665 78999999864
No 108
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.96 E-value=0.026 Score=52.96 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=33.7
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHC-CCCEEEEecCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDPA 128 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~-G~rVLlvD~D~~ 128 (413)
.++++.|..|+||||++.++|..++.. |.+|++++.+..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~ 75 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES 75 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC
Confidence 466677999999999999999999876 889999998753
No 109
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.90 E-value=0.021 Score=55.16 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=40.9
Q ss_pred ccCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHH------CCCCEEEEecCC
Q 015096 75 EAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFAN------NGHPTLVVSTDP 127 (413)
Q Consensus 75 ~~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~------~G~rVLlvD~D~ 127 (413)
.+...++.++.+ ....++.+.|..|+||||++.++|...+. .|.+|+.||++.
T Consensus 106 TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 106 TGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp CSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred cCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 345567777752 33467777899999999999999988655 578999999865
No 110
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.88 E-value=0.028 Score=48.02 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=22.1
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFAN 115 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~ 115 (413)
..+++.|..|+|||+++..++..+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34566799999999999999998876
No 111
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.80 E-value=0.025 Score=49.53 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=31.5
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
.+.++.|-.|+||||.+..++..+..+|++|+++-.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~ 39 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKP 39 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEee
Confidence 366777999999999999999999999999999753
No 112
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.80 E-value=0.026 Score=48.14 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=22.4
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFAN 115 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~ 115 (413)
.-+++.|..|+||||++..++..+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34467799999999999999999876
No 113
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.78 E-value=0.026 Score=57.78 Aligned_cols=41 Identities=22% Similarity=0.190 Sum_probs=36.5
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.++.++++.|-.|+||||+|..||..|...+.++.+++.|-
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 34678888899999999999999999988899999999884
No 114
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.56 E-value=0.029 Score=58.56 Aligned_cols=39 Identities=26% Similarity=0.343 Sum_probs=34.8
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
..++++.|-.|+||||+|..|+..|.++|.+++.+|.|.
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 467778899999999999999999999999999998764
No 115
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.54 E-value=0.038 Score=48.78 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=29.6
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
.++++.|-.|+||||++..|+..+...|.+|..+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 35666788999999999999999998899986554
No 116
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.51 E-value=0.036 Score=48.72 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=28.0
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
.++++.|-.|+||||+|..||..+...| +|+..+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~ 38 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLTE 38 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEec
Confidence 4677789999999999999999987777 665544
No 117
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.37 E-value=0.03 Score=57.96 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=34.4
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCC-CCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNG-HPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G-~rVLlvD~D~ 127 (413)
..++++.|-.|+||||+|..|+..|..+| +++.++|.|.
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 35677789999999999999999999888 8999999874
No 118
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.34 E-value=0.051 Score=47.89 Aligned_cols=35 Identities=11% Similarity=-0.089 Sum_probs=32.2
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
.|.++.|.-|+||||.+..+|..+..+|++|+++-
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 57777899999999999999999999999999995
No 119
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=94.33 E-value=1.2 Score=45.09 Aligned_cols=41 Identities=27% Similarity=0.401 Sum_probs=37.8
Q ss_pred CcEEEEEeCC-CcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYMLGGK-GGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~sgK-GGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+|-|.|++|- .|.||-.+|++++..|..+|+||-.+=.||.
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpy 44 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPY 44 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECS
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCcc
Confidence 4678888875 9999999999999999999999999999997
No 120
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.30 E-value=0.024 Score=51.06 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=36.5
Q ss_pred CCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHH------CCCCEEEEecCC
Q 015096 77 VSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFAN------NGHPTLVVSTDP 127 (413)
Q Consensus 77 ~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~------~G~rVLlvD~D~ 127 (413)
...++.++.+ ....++.+.|.+|+||||++..+|...+. .+.+|+.++.+.
T Consensus 10 ~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 10 SKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp CHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred ChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 3556666642 22346666699999999999999986543 367899999864
No 121
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.29 E-value=0.027 Score=52.97 Aligned_cols=37 Identities=27% Similarity=0.468 Sum_probs=29.3
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+..+++++|-.|+||||++..|+..+ +.....||+|-
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D~ 68 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDNDT 68 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechH
Confidence 35788999999999999999998654 23467888863
No 122
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.22 E-value=0.031 Score=51.32 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=29.9
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
..++++.|.+|+||||+|..|+..+ +..+.++|.|.-
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~ 68 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDSF 68 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHHH
Confidence 4677888999999999999998765 345788898853
No 123
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.19 E-value=0.024 Score=49.89 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=26.2
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.++++.|-.|+||||+|..|+..+ | ..++|.|.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l---g--~~~i~~d~ 51 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC---G--YPFIEGDA 51 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH---T--CCEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---C--CEEEeCCc
Confidence 466677999999999999999877 4 35677774
No 124
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.18 E-value=0.022 Score=49.19 Aligned_cols=32 Identities=31% Similarity=0.328 Sum_probs=24.4
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.++++.|-.|+||||+|..||..+ |. -++|+|
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l---~~--~~i~~d 37 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT---KR--ILYDSD 37 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH---CC--CEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh---CC--CEEECh
Confidence 355567889999999999999877 44 356665
No 125
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.04 E-value=0.033 Score=48.24 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=26.1
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
..++++.|-.|+||||++..|+..+ |.. ++|.|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l---~~~--~i~~D 37 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL---RLP--LLSKD 37 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc---CCe--EecHH
Confidence 4577888999999999999999877 444 45654
No 126
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.04 E-value=0.16 Score=48.01 Aligned_cols=41 Identities=22% Similarity=0.224 Sum_probs=27.4
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhC--CCCCCeEEEecccCC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKE--NVPVKRLIVNQIIPP 355 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~--g~~~~gvVvN~v~p~ 355 (413)
+.+++|......--.....+++.++.. +.|+ -+|+|++.-.
T Consensus 88 d~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~-ilV~NK~Dl~ 130 (301)
T 1wf3_A 88 NAVVWVVDLRHPPTPEDELVARALKPLVGKVPI-LLVGNKLDAA 130 (301)
T ss_dssp SEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCE-EEEEECGGGC
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHhhcCCCCE-EEEEECcccC
Confidence 578888887543223346677788877 6665 5899997543
No 127
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.03 E-value=0.055 Score=47.65 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=29.5
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
.++++.|-.|+||||++..|+..+...+..|.++.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 46667788999999999999999988888885554
No 128
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.01 E-value=0.03 Score=49.72 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=28.7
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHH-----HCC-CCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFA-----NNG-HPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA-----~~G-~rVLlvD~D 126 (413)
-|.++.|..|+|||+.|..++..++ +.| +++.+...|
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 4667789999999999999877765 677 666666654
No 129
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.99 E-value=0.027 Score=47.96 Aligned_cols=31 Identities=32% Similarity=0.401 Sum_probs=24.5
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
++++.|-.|+||||+|..||..+ |. -++|+|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l---g~--~~id~d 34 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL---GY--EFVDTD 34 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH---TC--EEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CC--cEEccc
Confidence 56667899999999999999876 33 467766
No 130
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.91 E-value=0.03 Score=53.32 Aligned_cols=52 Identities=21% Similarity=0.341 Sum_probs=38.8
Q ss_pred cCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHH------------HCC----CCEEEEecCC
Q 015096 76 AVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFA------------NNG----HPTLVVSTDP 127 (413)
Q Consensus 76 ~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA------------~~G----~rVLlvD~D~ 127 (413)
+...++.++.+ ....++++.|.+|+||||++.++|...+ ..| .+|+.||++.
T Consensus 83 G~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~ 152 (322)
T 2i1q_A 83 SSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEG 152 (322)
T ss_dssp SCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSS
T ss_pred CChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCC
Confidence 45667777742 3346777779999999999999998743 235 6899999864
No 131
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.90 E-value=0.043 Score=52.87 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=29.9
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
++.+++++|..|+||||+|..||..+. +.+|++|-.
T Consensus 6 m~~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred CCceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 346788889999999999999998762 789999964
No 132
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.90 E-value=0.04 Score=50.66 Aligned_cols=33 Identities=30% Similarity=0.300 Sum_probs=26.3
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.++++.|..|+||||+|..||..+ |. .+++.|-
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~---~~--~~i~~D~ 34 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET---GW--PVVALDR 34 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH---CC--CEEECCS
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC---CC--eEEeccH
Confidence 467788999999999999998766 33 4677775
No 133
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.81 E-value=0.028 Score=47.56 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=21.4
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEE
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTL 121 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVL 121 (413)
++++.|..|+||||+|..| .+.|..++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH----HHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHH----HHCCCcEE
Confidence 6677899999999999988 45576643
No 134
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.57 E-value=0.047 Score=55.58 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=33.3
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHH-C-CCCEEEEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFAN-N-GHPTLVVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~-~-G~rVLlvD~D~ 127 (413)
.++++.|-.|+||||+|..||..|.. + |+.+-++|.|.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 56777899999999999999999986 5 47888999987
No 135
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=93.56 E-value=0.17 Score=48.84 Aligned_cols=39 Identities=21% Similarity=0.173 Sum_probs=34.7
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
+.++|.+++.--++||||++..|...+.++|.++..+-+
T Consensus 168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~t 206 (350)
T 2g0t_A 168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLAT 206 (350)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEcc
Confidence 457899999888999999999999999999999988654
No 136
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.55 E-value=0.08 Score=47.44 Aligned_cols=38 Identities=24% Similarity=0.432 Sum_probs=32.4
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.++++.|-.|+||||.+..|+..|...|.+|.+.. .|.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~-~p~ 44 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR-EPG 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE-SSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc-CCC
Confidence 57777899999999999999999999999996554 454
No 137
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.55 E-value=0.08 Score=50.30 Aligned_cols=37 Identities=30% Similarity=0.349 Sum_probs=30.0
Q ss_pred CCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 86 ~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
..++.+++++|..|+||||+|..||..+ ..-+|++|-
T Consensus 7 ~~~~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds 43 (316)
T 3foz_A 7 ASLPKAIFLMGPTASGKTALAIELRKIL-----PVELISVDS 43 (316)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEECCT
T ss_pred CCCCcEEEEECCCccCHHHHHHHHHHhC-----CCcEEeccc
Confidence 3455788889999999999999998764 356888885
No 138
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.54 E-value=0.022 Score=49.24 Aligned_cols=32 Identities=31% Similarity=0.384 Sum_probs=24.9
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
++++.|-.|+||||+|..||..+ |.. ++|+|-
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l---g~~--~id~D~ 35 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL---GVG--LLDTDV 35 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc---CCC--EEeCch
Confidence 35667999999999999998876 443 678773
No 139
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.53 E-value=0.054 Score=47.60 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=26.3
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.++++.|..|+||||++..|+..+ | ...+|.|.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~---g--~~~i~~d~ 62 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET---G--LEFAEADA 62 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH---C--CEEEEGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh---C--CeEEcccc
Confidence 456666999999999999999877 4 36678765
No 140
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.48 E-value=0.044 Score=46.36 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=25.5
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
++++.|-.|+||||++..||..+ |. -.+|.|.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l---~~--~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL---KY--PIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH---CC--CEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CC--eeecCcc
Confidence 56777999999999999998766 44 3578775
No 141
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.46 E-value=0.035 Score=47.57 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=24.5
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
++++.|..|+||||+|..||..+ | ...+|.|
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l---~--~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL---D--LVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH---T--CEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---C--CCEEccc
Confidence 45566999999999999999876 3 3567876
No 142
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.45 E-value=0.026 Score=49.84 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=30.3
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
++++.|-.|+||||++..|+..+...|.+|.++.-
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~ 36 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAF 36 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEES
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 56667999999999999999999888888887764
No 143
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.44 E-value=0.071 Score=50.55 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=31.1
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
-+++.|..|+||||++..++..+...|.+++.++++
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 345568899999999999999998889999999864
No 144
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.42 E-value=0.051 Score=46.85 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=26.5
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
++.++++.|..|+||||+|..|+..+ | ...+|+|
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l---~--~~~i~~d 38 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF---G--WVHLSAG 38 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh---C--CeEeeHH
Confidence 44577778999999999999998766 3 3567765
No 145
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.42 E-value=0.052 Score=46.90 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=25.1
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.++++.|..|+||||+|..||..+ |. ..+|+|
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d 35 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY---GY--THLSAG 35 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CC--eEEeHH
Confidence 567777999999999999998766 43 456765
No 146
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.40 E-value=0.063 Score=48.55 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=34.8
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHH-CCCCEEEEecCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPAH 129 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~-~G~rVLlvD~D~~~ 129 (413)
..++++.|-.|+||||++..|+..|.. .|.+|.++.-.|.+
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~ 62 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG 62 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCC
Confidence 457777899999999999999999998 99998886666654
No 147
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.38 E-value=0.08 Score=49.18 Aligned_cols=26 Identities=35% Similarity=0.382 Sum_probs=21.7
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFAN 115 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~ 115 (413)
.++.+.|.+|+||||++..++..++.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 45666699999999999999997764
No 148
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=93.30 E-value=0.75 Score=45.00 Aligned_cols=43 Identities=9% Similarity=-0.016 Sum_probs=33.9
Q ss_pred CceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 313 STEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 313 ~t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
.+.+++|..+..-....+.+.+..++..+++..-+++|++.-.
T Consensus 90 aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 90 LDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAV 132 (397)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccC
Confidence 3578899888776667778888888888988656899998643
No 149
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.27 E-value=0.12 Score=45.72 Aligned_cols=40 Identities=33% Similarity=0.489 Sum_probs=32.7
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
..++.+.|..|+||||++..|+..+...|.++..|..|..
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 3455666999999999999999999876777888887754
No 150
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.25 E-value=0.076 Score=54.96 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=31.5
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
.++++.|-+|+||||+...++..+...|++|+++-
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 46777899999999999999999999999999884
No 151
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.25 E-value=0.089 Score=50.29 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=32.9
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHH--CCCCEEEEecCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFAN--NGHPTLVVSTDPA 128 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~--~G~rVLlvD~D~~ 128 (413)
..|+-+.|..|+||||++..|+..+.. .+.+|.+++.|..
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 456777799999999999999988764 3568999999864
No 152
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.24 E-value=0.034 Score=46.32 Aligned_cols=34 Identities=21% Similarity=0.047 Sum_probs=27.2
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+++.|..|+|||++|..++......+...+ +++.
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~ 60 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL 60 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC
Confidence 345699999999999999887766677777 7764
No 153
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.22 E-value=0.099 Score=46.15 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=30.6
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
++++-|--|+||||.+..|+..|.++|.+|++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4567899999999999999999999999998765
No 154
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.20 E-value=0.11 Score=46.86 Aligned_cols=51 Identities=35% Similarity=0.576 Sum_probs=35.5
Q ss_pred CchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHH-HCCCCEEEEecCCC
Q 015096 78 SGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTDPA 128 (413)
Q Consensus 78 ~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA-~~G~rVLlvD~D~~ 128 (413)
..++.++.+ ....++.+.|..|+||||+...++.... ..+.++++++.+..
T Consensus 17 ~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~ 70 (251)
T 2ehv_A 17 PGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp TTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred HhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 445555531 1223555569999999999999996555 66788899887643
No 155
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.18 E-value=0.059 Score=46.71 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=25.2
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.++++.|..|+||||++..||..+ .| .-++|+|
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l--~g--~~~id~d 43 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAEL--DG--FQHLEVG 43 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS--TT--EEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc--CC--CEEeeHH
Confidence 356667999999999999888752 13 5678887
No 156
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.18 E-value=0.063 Score=61.96 Aligned_cols=54 Identities=15% Similarity=0.221 Sum_probs=43.5
Q ss_pred ccCCchhhhhc-C--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 75 EAVSGFDEMVA-G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 75 ~~~~~~~~~~~-~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.++..++.++. + ....++++.|.+|+||||+|.++|..++..|.+|+.+|+...
T Consensus 715 TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees 771 (1706)
T 3cmw_A 715 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 771 (1706)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred cCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 34556777775 1 334567777999999999999999999999999999999765
No 157
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.09 E-value=0.081 Score=55.51 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=32.7
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
-+.++.|-+|+|||++.+.+...+.++|.+||++.-
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 378888999999999999999999999999999874
No 158
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.04 E-value=0.053 Score=47.44 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=26.6
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
++++.|-.|+||||++..||..+ .|.+++.++.
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~ 38 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNF 38 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEES
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEec
Confidence 55666899999999999998877 4678877764
No 159
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.99 E-value=0.048 Score=47.93 Aligned_cols=32 Identities=31% Similarity=0.441 Sum_probs=24.7
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.++++.|..|+||||++..||..+ |.. .+|+|
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l---~~~--~i~~d 57 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL---NVP--FIDLD 57 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc---CCC--EEcch
Confidence 355666999999999999999877 444 45665
No 160
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.96 E-value=0.098 Score=44.58 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=26.1
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.++++.|..|+||||++..|+..+ | ...+|.|.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~ 41 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDF 41 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCcc
Confidence 456667999999999999998776 4 45778774
No 161
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.88 E-value=0.058 Score=47.31 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=25.6
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+.++++.|..|+||||+|..|+..+ |. ..+|+|
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~---g~--~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY---SF--VHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS---SC--EEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---Cc--eEEeHH
Confidence 3567777999999999999998754 43 667776
No 162
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.84 E-value=0.068 Score=51.12 Aligned_cols=36 Identities=33% Similarity=0.369 Sum_probs=29.1
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
++.++++.|..|+||||+|..||..+ ...+||+|-.
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l-----~~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADAL-----PCELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc-----CCcEEeccch
Confidence 34578888999999999999998765 3678898853
No 163
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.84 E-value=0.075 Score=61.32 Aligned_cols=64 Identities=14% Similarity=0.214 Sum_probs=48.2
Q ss_pred ccCCchhhhhc-C--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCC--cchHhhcc
Q 015096 75 EAVSGFDEMVA-G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS--LSDSFAQD 138 (413)
Q Consensus 75 ~~~~~~~~~~~-~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~--l~~~lg~~ 138 (413)
.+...++.++. + ....++++.|.+|+||||+|.++|...+..|.+|+.||++.... .+..+|.+
T Consensus 366 TGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~~a~~lGvd 434 (1706)
T 3cmw_A 366 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVD 434 (1706)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCC
T ss_pred cCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHcCCC
Confidence 34566777775 2 23456777799999999999999999999999999999987532 23444544
No 164
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.77 E-value=0.077 Score=51.22 Aligned_cols=37 Identities=16% Similarity=0.119 Sum_probs=31.0
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHC--------CCCEEEEec
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANN--------GHPTLVVST 125 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~--------G~rVLlvD~ 125 (413)
...+++.|.+|+||||++..++..+... +..++.+++
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 3467777999999999999999988765 778888885
No 165
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.75 E-value=0.072 Score=46.71 Aligned_cols=33 Identities=39% Similarity=0.489 Sum_probs=25.4
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
..++++.|-.|+||||+|..||..+ |.. ++|+|
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l---~~~--~i~~d 52 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL---GIP--QISTG 52 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCc--EEehh
Confidence 3466777999999999999999877 444 46654
No 166
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.74 E-value=0.042 Score=47.80 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=25.3
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.++++.|..|+||||+|..||..+ | ...+|+|
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l---~--~~~i~~d 44 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY---G--FTHLSTG 44 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh---C--CeEEcHH
Confidence 466777999999999999999877 3 4567765
No 167
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.73 E-value=0.07 Score=50.15 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=27.4
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
..+++.|.+|+|||++|.++|..+ |.+++.+++
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 455566999999999999999888 778888875
No 168
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.71 E-value=0.062 Score=46.59 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=24.8
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.++++.|-.|+||||+|..||..+ |. ..+|+|
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l---~~--~~i~~d 41 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY---GY--THLSTG 41 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh---CC--eEEcHH
Confidence 356667999999999999999876 43 466765
No 169
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.70 E-value=0.073 Score=50.11 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=31.2
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCC--CCEE-EEecCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNG--HPTL-VVSTDPA 128 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G--~rVL-lvD~D~~ 128 (413)
..++.+.|..|+||||++..|+..+...| .++. +|..|..
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 45666679999999999999999998655 4444 4499865
No 170
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.66 E-value=0.077 Score=45.86 Aligned_cols=34 Identities=32% Similarity=0.521 Sum_probs=25.9
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.++++.|..|+||||++..|+.. .+...+.+|.|
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d 43 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSD 43 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEccc
Confidence 46677799999999999988764 34456677765
No 171
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.58 E-value=0.042 Score=48.13 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=23.5
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHP 119 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~r 119 (413)
+++.|.+|+|||+++..++..+...+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~ 68 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGENWR 68 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccccc
Confidence 6677999999999999999988765544
No 172
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.54 E-value=0.051 Score=46.23 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=24.3
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.++++.|..|+||||++..||..+ | ...+|+|
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l---~--~~~id~d 36 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL---N--MEFYDSD 36 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT---T--CEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh---C--CCEEecc
Confidence 355666999999999999988765 3 3567776
No 173
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.50 E-value=0.18 Score=48.73 Aligned_cols=40 Identities=25% Similarity=0.388 Sum_probs=34.4
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
.++.+.|.+|+||||+--.|...+...|.+|.++..||..
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 4556669999999999999999998889999999999985
No 174
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.47 E-value=0.083 Score=61.82 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=42.1
Q ss_pred cCCchhhhhc-C--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 76 AVSGFDEMVA-G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 76 ~~~~~~~~~~-~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+...++.++. . ....++++.|..|+|||++|.++|...+++|.+|+.+|++-
T Consensus 1411 G~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1411 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1465 (2050)
T ss_dssp SCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred CCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc
Confidence 3345777776 2 33456777799999999999999999999999999999863
No 175
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.47 E-value=0.11 Score=44.75 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=30.1
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++.|+ |..|+||||++..|+..+...|.++.-|-.|.
T Consensus 3 ~~v~Iv-G~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 3 LILSIV-GTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp CEEEEE-ESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 456666 48899999999999999998888877666654
No 176
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.44 E-value=0.087 Score=46.39 Aligned_cols=34 Identities=32% Similarity=0.437 Sum_probs=26.6
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+.++.+.|..|+||||+|..|+..+ | .-++|+|-
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l---g--~~vid~D~ 45 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY---G--AHVVNVDR 45 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---C--CEEEECcH
Confidence 4566667889999999999988764 5 46788874
No 177
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.40 E-value=0.19 Score=45.07 Aligned_cols=36 Identities=11% Similarity=-0.029 Sum_probs=32.9
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
-.|.|..|.-|.||||.+..+|..+..+|++|+++-
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 357788899999999999999999999999999986
No 178
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.39 E-value=0.077 Score=49.64 Aligned_cols=34 Identities=24% Similarity=0.256 Sum_probs=26.7
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+.++++.|-.|+||||+|..|+..+ .....||.|
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D 35 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN----PGFYNINRD 35 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC----CCcEEeccc
Confidence 4678888999999999999988632 245677877
No 179
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.39 E-value=0.12 Score=48.31 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=36.9
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC---CcchHhhc
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH---SLSDSFAQ 137 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~---~l~~~lg~ 137 (413)
..+++.|..|+||||+|..+|..+...+.++..+++..-. ....++|.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 98 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGA 98 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCC
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCC
Confidence 4566779999999999999999998777889999976432 24455553
No 180
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.35 E-value=0.11 Score=49.95 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=30.6
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHC------CCCEEEEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANN------GHPTLVVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~------G~rVLlvD~D~ 127 (413)
..+++.|.+|+||||++..++..+... +..++.+++..
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 456677999999999999999988764 66777787654
No 181
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.27 E-value=0.046 Score=52.29 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=34.1
Q ss_pred cCCchhhhhcC-CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 76 AVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 76 ~~~~~~~~~~~-~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
+...++.++.+ ....+.++.|.+|+||||+|.++|.. .|.+|+.+++
T Consensus 109 Gi~~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 109 CSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp BCCEEEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred CcHHHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 34445555521 12345577899999999999999986 6788999988
No 182
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.25 E-value=0.14 Score=46.68 Aligned_cols=40 Identities=20% Similarity=0.453 Sum_probs=32.2
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
.++++.|-.|+||||.+..|+..|...|.++.++--.|.+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~ 67 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGG 67 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCC
Confidence 5677789999999999999999999999994344445543
No 183
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=92.24 E-value=0.9 Score=47.97 Aligned_cols=41 Identities=15% Similarity=0.048 Sum_probs=31.6
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
+.+++|..+...........+..+...++++. +|+|++.-.
T Consensus 100 D~~llVvDa~~g~~~~~~~~~~~~~~~~~p~i-lviNK~Dl~ 140 (693)
T 2xex_A 100 DGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-VFVNKMDKL 140 (693)
T ss_dssp SEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTST
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHHHcCCCEE-EEEECCCcc
Confidence 47888888866555667778888888898864 889998654
No 184
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=92.20 E-value=1.4 Score=43.20 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=33.0
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
+.+++|..+.......+.+.+..++..+++..-+|+|++.-.
T Consensus 100 D~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 100 DGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMV 141 (405)
T ss_dssp SSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECcccc
Confidence 478888888766667788888889889988556899997543
No 185
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.14 E-value=0.074 Score=45.67 Aligned_cols=32 Identities=34% Similarity=0.440 Sum_probs=24.2
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.++++.|-.|+||||++..||..+ |. -.+|+|
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~---~~--~~~~~d 43 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS---GL--KYINVG 43 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh---CC--eEEEHH
Confidence 345677999999999999999776 33 456655
No 186
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.11 E-value=0.13 Score=48.59 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=30.7
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHH--HCCCCEEEEecCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFA--NNGHPTLVVSTDPA 128 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA--~~G~rVLlvD~D~~ 128 (413)
.++.+.|..|+||||++..|+..+. -.+.+|.+|++|-.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 4555568999999999999998876 34557999998854
No 187
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.99 E-value=0.12 Score=46.73 Aligned_cols=38 Identities=24% Similarity=0.479 Sum_probs=28.9
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHC----CCCEEEEecCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANN----GHPTLVVSTDPA 128 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~----G~rVLlvD~D~~ 128 (413)
.++++.|-.|+||||.+..|+..|... |.+|.+.. .|.
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r-ep~ 67 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR-EPG 67 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE-SSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec-CCC
Confidence 577778999999999999999999988 99996543 454
No 188
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.97 E-value=0.15 Score=51.14 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=30.3
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCC-CEEEEe
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGH-PTLVVS 124 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~-rVLlvD 124 (413)
.+++.|.+|+||||++..++..|...|. +|+++.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a 81 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAA 81 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEec
Confidence 7777899999999999999999999887 788774
No 189
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.87 E-value=0.079 Score=52.28 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=38.3
Q ss_pred ccCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHH------CCCCEEEEecCC
Q 015096 75 EAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFAN------NGHPTLVVSTDP 127 (413)
Q Consensus 75 ~~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~------~G~rVLlvD~D~ 127 (413)
.+...++.++.+ ....++.+.|..|+||||++.+++..... .+.+|+.+|...
T Consensus 162 TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 162 TGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp CSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 355667777743 22346666699999999999999877654 356899999753
No 190
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.82 E-value=0.1 Score=45.81 Aligned_cols=32 Identities=34% Similarity=0.344 Sum_probs=24.2
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.++.+.|..|+||||++..||. .|.. ++|+|.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~----lg~~--~id~d~ 34 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD----LGVP--LVDADV 34 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT----TTCC--EEEHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH----CCCc--ccchHH
Confidence 4566669999999999988875 4654 568774
No 191
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=91.78 E-value=0.81 Score=48.33 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=32.5
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 355 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~ 355 (413)
+.+++|..+.......+...+..+...++++. +|+|++...
T Consensus 102 D~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~ 142 (691)
T 1dar_A 102 DGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKMDKT 142 (691)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECTTST
T ss_pred CEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCcc
Confidence 47899998876666677788888888898864 889998654
No 192
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.75 E-value=0.14 Score=47.93 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=27.8
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCC----CEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGH----PTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~----rVLlvD~ 125 (413)
-+++.|.+|+|||++|..+|..+...+. +++.+++
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 3556689999999999999999987665 5666653
No 193
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.72 E-value=0.11 Score=60.66 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=44.1
Q ss_pred ccCCchhhhhc-C--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC
Q 015096 75 EAVSGFDEMVA-G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (413)
Q Consensus 75 ~~~~~~~~~~~-~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~ 129 (413)
.+...++.++. + ....++++.|.+|+||||+|.++|..++..|.+|+.+|+....
T Consensus 366 TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~ 423 (2050)
T 3cmu_A 366 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 423 (2050)
T ss_dssp CSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred CCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCH
Confidence 34456777775 1 3345777779999999999999999999999999999998653
No 194
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.66 E-value=0.16 Score=45.40 Aligned_cols=39 Identities=23% Similarity=0.447 Sum_probs=31.4
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCC-CEEEEecCCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGH-PTLVVSTDPAH 129 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~-rVLlvD~D~~~ 129 (413)
.++++.|-.|+||||.+..|+..|...|. .|. +--.|.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~-~~rep~~ 43 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMV-FTREPGG 43 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEE-EEESSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcce-eeeCCCC
Confidence 46677799999999999999999999998 664 4444554
No 195
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.66 E-value=0.11 Score=44.10 Aligned_cols=32 Identities=34% Similarity=0.392 Sum_probs=24.9
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.++++.|-.|+||||+|..||..| |.+ ++|+|
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l---g~~--~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL---KLE--VLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCC--EEECh
Confidence 456667999999999999998776 454 46776
No 196
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.59 E-value=0.19 Score=48.38 Aligned_cols=39 Identities=18% Similarity=0.108 Sum_probs=32.0
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHC-CCCEEEEecCCCC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDPAH 129 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~-G~rVLlvD~D~~~ 129 (413)
.+++.|..|+||||++..++..+... +..++.+++....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 56677999999999999999888776 6788888865443
No 197
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=91.53 E-value=0.24 Score=45.75 Aligned_cols=53 Identities=4% Similarity=-0.023 Sum_probs=39.9
Q ss_pred cCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 76 AVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 76 ~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+...+++++.+ ....+.+++|-+|.||||++..++...+++|.+++++..+-.
T Consensus 6 Gi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~ 60 (260)
T 3bs4_A 6 EIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYP 60 (260)
T ss_dssp SSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred CcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence 45677888875 223444446666666779999999999999999999999844
No 198
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.47 E-value=0.13 Score=49.41 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=30.7
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHC---CCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANN---GHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~---G~rVLlvD~D 126 (413)
..+++.|.+|+||||++..++..+... +..++.+++.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 456667999999999999999988765 7788888864
No 199
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.42 E-value=0.095 Score=46.12 Aligned_cols=35 Identities=26% Similarity=0.243 Sum_probs=26.5
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.++.+.|..|+||||++..|+..+. .+.+++.|..
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 4555668899999999988775331 5889999864
No 200
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.40 E-value=0.18 Score=45.50 Aligned_cols=34 Identities=15% Similarity=0.324 Sum_probs=28.8
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEE
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVV 123 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlv 123 (413)
..++++.|-.|+||||++..|+..+.. |.+|+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 356677899999999999999999988 8888654
No 201
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.38 E-value=0.078 Score=45.43 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=18.6
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEE
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTL 121 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVL 121 (413)
.++++.|-.|+||||+|..||..+ |..++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l---~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL---PGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS---TTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCCEE
Confidence 466777999999999999987654 55554
No 202
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.38 E-value=0.15 Score=48.49 Aligned_cols=34 Identities=32% Similarity=0.385 Sum_probs=27.8
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+.+++++|-.|+||||+|..||..+ ..-+|++|-
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds 36 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDS 36 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC-----ccceeecCc
Confidence 3577888999999999999998754 467889885
No 203
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.36 E-value=0.08 Score=46.40 Aligned_cols=31 Identities=29% Similarity=0.421 Sum_probs=23.0
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
++.+.|..|+||||++..||. + | +-++|+|-
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~---g--~~~i~~d~ 33 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L---G--AYVLDADK 33 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T---T--CEEEEHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-C---C--CEEEEccH
Confidence 344558899999999999887 4 4 45677663
No 204
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.27 E-value=0.15 Score=46.48 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=25.2
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
..++++.|..|+||||+|..|+..+ | ...+|+|
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~---g--~~~is~~ 61 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH---C--YCHLSTG 61 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh---C--CeEEecH
Confidence 4566777999999999999998766 3 3556653
No 205
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.25 E-value=0.19 Score=44.67 Aligned_cols=34 Identities=15% Similarity=0.324 Sum_probs=29.0
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
..+++-|--|+||||.+..|+..|. +|.+|++.-
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~ 36 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTR 36 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEee
Confidence 4677889999999999999999996 588887654
No 206
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.16 E-value=0.18 Score=48.99 Aligned_cols=40 Identities=20% Similarity=0.161 Sum_probs=31.7
Q ss_pred cEEEEE--eCCCcchhhHHHHHHHHHHHHC------CCCEEEEecCCC
Q 015096 89 RKYYML--GGKGGVGKTSCAASLAVKFANN------GHPTLVVSTDPA 128 (413)
Q Consensus 89 ~~i~v~--sgKGGvGKTTvAa~LA~~lA~~------G~rVLlvD~D~~ 128 (413)
...+++ .|.+|+||||++..++..+... +..++.+++...
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA 97 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC
Confidence 346666 8999999999999999888763 567888887543
No 207
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.08 E-value=0.15 Score=43.68 Aligned_cols=32 Identities=31% Similarity=0.396 Sum_probs=24.7
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.++++.|-.|+||||++..||..+ |. ..+|+|
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l---~~--~~i~~d 36 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL---GF--KKLSTG 36 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH---TC--EEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CC--eEecHH
Confidence 356677999999999999998776 43 456664
No 208
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.08 E-value=0.12 Score=47.37 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=29.5
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++.|..|+|||++|..++..+...+.+++.+++..
T Consensus 32 vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 32 VLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp EEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred EEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 445699999999999999988776677888888643
No 209
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.05 E-value=0.09 Score=46.01 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=25.4
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
++.++|-.|+||||++..||..+ | +-++|+|.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l---g--~~~~d~d~ 35 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL---G--VPYLSSGL 35 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---T--CCEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---C--Cceeccch
Confidence 56667999999999999998876 3 45678773
No 210
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.05 E-value=0.14 Score=49.19 Aligned_cols=35 Identities=34% Similarity=0.550 Sum_probs=28.6
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
..++++.|--|+||||+|..||..+ ..-+||+|-.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF-----PLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS-----CEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC-----CCcEEccccc
Confidence 3577888999999999999998654 4678999964
No 211
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.01 E-value=0.2 Score=50.25 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=33.5
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.++.++++.|-.|+||||++..||..+...+.++..++.|
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d 76 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG 76 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecc
Confidence 3456777889999999999999999998888888887755
No 212
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=90.92 E-value=0.16 Score=50.59 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=30.8
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHC--CCCEEEEecC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANN--GHPTLVVSTD 126 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~--G~rVLlvD~D 126 (413)
-+++.|..|+||||++..+|..+... |.+++.+++.
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 45666999999999999999998765 8899998864
No 213
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.85 E-value=0.1 Score=46.42 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=23.5
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.+++.|..|+||||+|..||..+ |. -.+|+|
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d 37 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY---GL--AHLSTG 37 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---Cc--eEEehh
Confidence 45556999999999999999887 44 455653
No 214
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=90.76 E-value=0.2 Score=52.20 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=29.1
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHH----CCCCEEEEe
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFAN----NGHPTLVVS 124 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~----~G~rVLlvD 124 (413)
..++++.|.+|+||||+.+.+...+.+ .|.+|+++-
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~A 203 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA 203 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEB
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEe
Confidence 457788899999999999999888874 466888763
No 215
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.66 E-value=0.17 Score=43.93 Aligned_cols=33 Identities=30% Similarity=0.286 Sum_probs=24.7
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+.++.+.|..|+||||++..||.. |. .++|+|.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~----g~--~~id~d~ 40 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW----GY--PVLDLDA 40 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT----TC--CEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC----CC--EEEcccH
Confidence 345666688999999999888763 54 4678773
No 216
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.66 E-value=0.1 Score=46.79 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=24.0
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.++++.|..|+||||+|..||..+ |. ..+|+|
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d 39 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF---EL--KHLSSG 39 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS---SS--EEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---CC--eEEech
Confidence 456667999999999999998755 43 456654
No 217
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.62 E-value=0.16 Score=42.71 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=24.0
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
++++.|..|+||||+|..|+..+ |.+ ++|+|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l---~~~--~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL---NIP--FYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH---TCC--EEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCC--EEECc
Confidence 35667999999999999998876 444 46765
No 218
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.55 E-value=0.16 Score=44.82 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=18.8
Q ss_pred EEEeCCCcchhhHHHHHHHHHH
Q 015096 92 YMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~l 113 (413)
+++.|..|+||||+|..||..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4557999999999999998766
No 219
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.51 E-value=0.16 Score=45.16 Aligned_cols=32 Identities=28% Similarity=0.326 Sum_probs=24.3
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.++++.|..|+||||+|..||..+ |. ..+|+|
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d 36 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF---HA--AHLATG 36 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---Cc--eEEehh
Confidence 356667999999999999999876 33 456653
No 220
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.45 E-value=0.18 Score=44.70 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=34.4
Q ss_pred CCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHH------CCCCEEEEecCC
Q 015096 77 VSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFAN------NGHPTLVVSTDP 127 (413)
Q Consensus 77 ~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~------~G~rVLlvD~D~ 127 (413)
+..++.++.+ ..-.++.+.|..|+||||++..++..+.. .+.+++.++.+.
T Consensus 11 ~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 11 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp CHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred ChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 3455555532 12346666699999999999999986654 245688887653
No 221
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.27 E-value=0.23 Score=43.62 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=27.5
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
++.+.|..|+||||++..|+..+.. ++.+++.|..
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~ 42 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHY 42 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCcc
Confidence 4444578899999999999887642 5889999874
No 222
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.25 E-value=0.16 Score=45.04 Aligned_cols=29 Identities=34% Similarity=0.441 Sum_probs=22.6
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
+++.|..|+||||+|..||..+ |..+ +|+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~---g~~~--i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY---GIPQ--IST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH---CCCE--EEH
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCeE--EeH
Confidence 4666899999999999999877 5543 555
No 223
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.24 E-value=0.26 Score=45.77 Aligned_cols=32 Identities=34% Similarity=0.406 Sum_probs=26.1
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+++.|..|+|||++|..+|..+ +.++..+++.
T Consensus 53 vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~ 84 (310)
T 1ofh_A 53 ILMIGPTGVGKTEIARRLAKLA---NAPFIKVEAT 84 (310)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGG
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCEEEEcch
Confidence 3455999999999999999877 6678888764
No 224
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=90.20 E-value=0.68 Score=46.17 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=26.8
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEeccc
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQII 353 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~ 353 (413)
+.+++|......-...-..+.+.+++.+.++ -+|+|++.
T Consensus 104 d~il~VvD~~~~~~~~d~~l~~~l~~~~~pv-ilV~NK~D 142 (456)
T 4dcu_A 104 DVIIFMVNGREGVTAADEEVAKILYRTKKPV-VLAVNKLD 142 (456)
T ss_dssp SEEEEEEESSSCSCHHHHHHHHHHTTCCSCE-EEEEECC-
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHcCCCE-EEEEECcc
Confidence 4677777765544445567788888888776 47889864
No 225
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.07 E-value=0.19 Score=43.66 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.3
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHH
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFA 114 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA 114 (413)
++++.|-.|+||||++..||..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 456679999999999999998773
No 226
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.99 E-value=0.14 Score=45.58 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.3
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
.++++.|..|+||||++..||..+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 356667899999999999999876
No 227
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.98 E-value=0.42 Score=45.79 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=34.2
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.++.+.|..|+||||+--.|+..+...+.+|.++..|+.
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS 94 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCc
Confidence 455566999999999999999998888899999999885
No 228
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.97 E-value=0.17 Score=45.36 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=24.1
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
++++.|..|+||||+|..||..+ |. ..+++|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l---g~--~~i~~d 32 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY---SL--AHIESG 32 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TC--EEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CC--eEEchH
Confidence 46677999999999999999877 44 456653
No 229
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.92 E-value=0.21 Score=44.20 Aligned_cols=32 Identities=34% Similarity=0.395 Sum_probs=24.8
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+.++++.|..|+||||++..|+. .|. -++|+|
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~----lg~--~~id~D 35 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD----LGI--NVIDAD 35 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH----TTC--EEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH----cCC--EEEEcc
Confidence 35677779999999999998875 354 577876
No 230
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.74 E-value=0.19 Score=46.83 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=25.2
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+.++++.|..|+||||+|..|+ .+ |. -+||+|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~l---g~--~~id~D~ 107 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NL---GA--YIIDSDH 107 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HH---TC--EEEEHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HC---CC--cEEehhH
Confidence 4566777899999999999998 33 55 4688863
No 231
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.73 E-value=0.33 Score=43.92 Aligned_cols=33 Identities=30% Similarity=0.303 Sum_probs=26.1
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
-+++.|.+|+|||++|..+|..+ +.+++.+++.
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~ 73 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGA 73 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEEEechH
Confidence 34566999999999999998865 5677777763
No 232
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.52 E-value=0.21 Score=48.22 Aligned_cols=52 Identities=23% Similarity=0.302 Sum_probs=36.7
Q ss_pred cCCchhhhhcC--CCcEEEEEeCCCcchhhHHHHHHHHHHHHC------CCCEEEEecCC
Q 015096 76 AVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANN------GHPTLVVSTDP 127 (413)
Q Consensus 76 ~~~~~~~~~~~--~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~------G~rVLlvD~D~ 127 (413)
+...++.++.. ....+..+.|..|+||||++..++..++.. |.+|+.||+..
T Consensus 116 G~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 116 GSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 44566776653 223455566899999999999999877432 35789999753
No 233
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.43 E-value=0.23 Score=44.70 Aligned_cols=31 Identities=32% Similarity=0.339 Sum_probs=24.0
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.+++.|..|+||||+|..||..+ | ...+|+|
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 48 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNF---C--VCHLATG 48 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CceecHH
Confidence 45667999999999999999887 3 3456654
No 234
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=89.26 E-value=0.46 Score=43.03 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=33.1
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
-.|.|..|.-|.||||-+..++.....+|+||+++-
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 457888899999999999999999999999999998
No 235
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.20 E-value=0.32 Score=50.73 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=30.1
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHH-CCCCEEEEec
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVST 125 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~-~G~rVLlvD~ 125 (413)
.+.++.|.+|+||||+.+.++..+.+ .+.+|+++--
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~ 232 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP 232 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 36677899999999999999998887 6788888763
No 236
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=88.96 E-value=0.38 Score=45.78 Aligned_cols=29 Identities=10% Similarity=0.150 Sum_probs=23.8
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANN 116 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~ 116 (413)
....++++|++|+|||+++-.++..+.+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 33455778999999999999999999753
No 237
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.84 E-value=0.24 Score=44.13 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=21.4
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHH
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
+.-+++.|.+|+||||+|.+||..+
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3346777999999999999999887
No 238
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.77 E-value=0.41 Score=47.12 Aligned_cols=34 Identities=35% Similarity=0.589 Sum_probs=27.7
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+.+++++|-.|+||||+|..||..+- .-+|++|-
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~-----~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN-----GEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT-----EEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC-----CeEeecCc
Confidence 35677889999999999999998773 35788885
No 239
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=88.66 E-value=0.27 Score=42.42 Aligned_cols=33 Identities=30% Similarity=0.633 Sum_probs=24.1
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.++++.|..|+||||++..|+..+ .| ...+|.|
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~--~g--~~~i~~d 35 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL--DN--SAYIEGD 35 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS--SS--EEEEEHH
T ss_pred eEEEEECCCCCcHHHHHHHHhccc--CC--eEEEccc
Confidence 467778999999999999997521 22 3566765
No 240
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.63 E-value=0.23 Score=49.17 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=26.9
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
....++++.|-.|+||||+|..|+..+ ....||.|.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~ 291 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDT 291 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccch
Confidence 345678888999999999999887644 345666654
No 241
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=88.52 E-value=0.17 Score=44.40 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.3
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
.++++.|..|+||||++..|+..+
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 456677999999999999998766
No 242
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.42 E-value=0.3 Score=50.22 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=31.0
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCC-CCEEEEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNG-HPTLVVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G-~rVLlvD~D~ 127 (413)
.++++.|..|+||||++..||..+...+ .++.++|.|.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 4566669999999999999999997654 5788898874
No 243
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=88.39 E-value=0.31 Score=48.89 Aligned_cols=36 Identities=31% Similarity=0.399 Sum_probs=25.9
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHH-------CCCCEEEEecC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFAN-------NGHPTLVVSTD 126 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~-------~G~rVLlvD~D 126 (413)
=+++.|.+|+|||++|-.+|..+.. .|.+++-+|+.
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 245 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG 245 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC
Confidence 3456699999999999999999875 35566655543
No 244
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.33 E-value=0.46 Score=46.30 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=33.7
Q ss_pred EEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCC-CcchHhh
Q 015096 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFA 136 (413)
Q Consensus 93 v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~-~l~~~lg 136 (413)
++.|..|.||||+...++..+...|.+|+++|-+-.- .+...+|
T Consensus 39 ~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~g 83 (392)
T 4ag6_A 39 TILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREYKEMCRKLG 83 (392)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCSHHHHHHTT
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCHHHHHHHcC
Confidence 3449999999999999999998899999999755332 3444444
No 245
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.30 E-value=0.24 Score=43.78 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=22.0
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+++.|..|+||||+|..||..+ |. ..+|+|
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d 32 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY---GI--PHISTG 32 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS---SC--CEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CC--cEEeHH
Confidence 4456999999999999988654 43 455653
No 246
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=88.07 E-value=0.29 Score=43.27 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=20.4
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHH
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
..+++++|..|+||||+...|+..+
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 4567778999999999999887543
No 247
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=88.06 E-value=0.38 Score=46.54 Aligned_cols=32 Identities=31% Similarity=0.396 Sum_probs=25.9
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
-+++.|..|+|||++|..+|..+ |.+...+++
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~ 105 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHL---DIPIAISDA 105 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---CCCEEEecc
Confidence 34556999999999999999876 677777775
No 248
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=88.02 E-value=0.38 Score=43.14 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
.|+++-|.+|+||+|.|..||..+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 455566999999999999999766
No 249
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=88.00 E-value=0.28 Score=43.50 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=20.7
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHH
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
++.|+.++||.|+||+|+|--+...+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 35577777999999999998876545
No 250
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=87.88 E-value=0.5 Score=42.75 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=27.5
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHC-----CCCEEEEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANN-----GHPTLVVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~-----G~rVLlvD~D~ 127 (413)
.++-+.|..|+||||++..|+..+-.- ..++.+++.|.
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR 68 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc
Confidence 445555899999999999998877211 24677888773
No 251
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=87.86 E-value=0.44 Score=44.68 Aligned_cols=43 Identities=30% Similarity=0.283 Sum_probs=31.2
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhh
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFA 136 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg 136 (413)
.+++.|..|+|||++|..++..+ |.++..+++........+++
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~~~~l~~ 82 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEKPGDLAA 82 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCSHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCChHHHHH
Confidence 44556999999999999998876 57777787765444444443
No 252
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=87.82 E-value=0.3 Score=49.99 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=18.8
Q ss_pred cEEEEEeCCCcchhhHHHHHHHH
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAV 111 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~ 111 (413)
..++.+.|-||+||||+|..++.
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 35666679999999999998875
No 253
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=87.76 E-value=0.44 Score=51.20 Aligned_cols=35 Identities=29% Similarity=0.491 Sum_probs=29.8
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHH-CCCCEEEEe
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVS 124 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~-~G~rVLlvD 124 (413)
.+.++.|-+|+||||+.+.++..+.+ .|.+|+++-
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a 407 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA 407 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEc
Confidence 36778899999999999999998887 678888775
No 254
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=87.73 E-value=0.55 Score=43.04 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=26.5
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
...-+++.|..|+|||++|..+|..+ |.+.+.+++
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~ 97 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICS 97 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeC
Confidence 34556667999999999999998864 566666653
No 255
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.73 E-value=0.49 Score=48.17 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=31.4
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.++.+.|..|+||||++..++..++..|.+++.++..
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4556669999999999999999988889898888764
No 256
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=87.49 E-value=0.35 Score=42.46 Aligned_cols=27 Identities=41% Similarity=0.551 Sum_probs=22.4
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANN 116 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~ 116 (413)
..+++.|.+|+||||++..++..+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 366677999999999999999887643
No 257
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.48 E-value=0.5 Score=42.86 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=23.7
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
+++.|..|+||||+|..+|..+ +.+++.+++
T Consensus 48 vll~G~~GtGKT~la~~la~~~---~~~~~~i~~ 78 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEA---KVPFFTISG 78 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH---TCCEEEECS
T ss_pred EEEECcCCCCHHHHHHHHHHHc---CCCEEEEeH
Confidence 4456999999999999999765 456665553
No 258
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=87.41 E-value=0.71 Score=43.72 Aligned_cols=40 Identities=25% Similarity=0.161 Sum_probs=31.8
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHC-C-CCEEEEecCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANN-G-HPTLVVSTDPA 128 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~-G-~rVLlvD~D~~ 128 (413)
..++.+.|..|+||||++..|+..+... | .+|.+|..|..
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 3455566999999999999999988753 5 57889988864
No 259
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=87.40 E-value=1 Score=41.48 Aligned_cols=43 Identities=23% Similarity=0.368 Sum_probs=38.9
Q ss_pred CCCcEEEEEeC-CCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 86 GTQRKYYMLGG-KGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 86 ~~~~~i~v~sg-KGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
..+|-|.|++| -.|.||=.+|++++..|..+|+||-++-.||.
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPY 64 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPY 64 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECS
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccc
Confidence 35677888877 69999999999999999999999999999997
No 260
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=87.26 E-value=0.55 Score=44.37 Aligned_cols=43 Identities=23% Similarity=0.224 Sum_probs=30.5
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhc
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQ 137 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~ 137 (413)
+++.|..|+|||++|..+|..+ +.+..-+.+.+.....+++|.
T Consensus 49 vll~G~pGtGKT~la~~la~~~---~~~~~~i~~~~~~~~~~l~g~ 91 (331)
T 2r44_A 49 ILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQFTPDLLPSDLIGT 91 (331)
T ss_dssp EEEESCCCHHHHHHHHHHHHHT---TCCEEEEECCTTCCHHHHHEE
T ss_pred EEEECCCCCcHHHHHHHHHHHh---CCCeEEEecCCCCChhhcCCc
Confidence 4445999999999999998765 566777777554444455553
No 261
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.04 E-value=0.39 Score=48.77 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=28.2
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
..+++.|..|+||||+|..+|..+ |..++-+++.
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s 111 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNAS 111 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCC
Confidence 466778999999999999998877 7788877763
No 262
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=86.91 E-value=0.47 Score=43.70 Aligned_cols=32 Identities=28% Similarity=0.249 Sum_probs=24.2
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
-+++.|.+|+|||++|..+|..+ +.++.-+++
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~ 84 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATET---NATFIRVVG 84 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence 35556999999999999987654 566666664
No 263
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=86.89 E-value=0.45 Score=47.34 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=40.8
Q ss_pred CCcEEEEEe---CCCcchhhHHHHHHHHHHHHCCCCEEEEecCCCCCcchHhhccc
Q 015096 87 TQRKYYMLG---GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDL 139 (413)
Q Consensus 87 ~~~~i~v~s---gKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~~~l~~~lg~~~ 139 (413)
.+|.|+|++ .+-|+||||++..|+.+|.+.|+++.+.= -++|+.-.||.+.
T Consensus 42 ~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~~~l--RePSlGP~FGiKG 95 (543)
T 3do6_A 42 DGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIVTL--REPSLGPTLGLKG 95 (543)
T ss_dssp CCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEEE--CCCCHHHHHHSCC
T ss_pred CCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeEEEE--ecCCCCCcCCccc
Confidence 456666654 46799999999999999999999987653 2359999999874
No 264
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=86.69 E-value=0.43 Score=44.96 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=28.5
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
..+++++|..|+|||+++..+|..+ |.+++-+++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~ 82 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGS 82 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETT
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEccc
Confidence 4578889999999999999998766 6677777753
No 265
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=86.49 E-value=0.37 Score=42.46 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=19.9
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
.++++.|..|+||||++..|+..+
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 466778999999999999887654
No 266
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=86.40 E-value=0.45 Score=42.10 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=23.0
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
++.+.|..|+||||++..|+..+ | .-.+|+|
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~---g--~~~~d~g 37 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL---Q--WHLLDSG 37 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CCcccCc
Confidence 44555899999999999998765 3 3456765
No 267
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=86.39 E-value=0.38 Score=41.34 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=20.1
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
.++++.|..|+||||++..|+..+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 466777999999999999988754
No 268
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=86.38 E-value=0.33 Score=42.21 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=25.1
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+++.|-.|+||||.|-.||.. |.+++.+++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEecC
Confidence 455578899999999988754 7789999884
No 269
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=85.93 E-value=0.54 Score=45.24 Aligned_cols=31 Identities=32% Similarity=0.367 Sum_probs=24.9
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
+++.|..|+|||++|..+|..+ |.+.+-+++
T Consensus 54 vll~GppGtGKT~la~~ia~~~---~~~~~~~~~ 84 (363)
T 3hws_A 54 ILLIGPTGSGKTLLAETLARLL---DVPFTMADA 84 (363)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT---TCCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHc---CCCEEEech
Confidence 3446999999999999999876 667777765
No 270
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=85.72 E-value=0.32 Score=45.84 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=29.5
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++.|..|+|||++|..++......+.+.+.+++..
T Consensus 28 vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~ 63 (304)
T 1ojl_A 28 VLIHGDSGTGKELVARALHACSARSDRPLVTLNCAA 63 (304)
T ss_dssp EEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSS
T ss_pred EEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCC
Confidence 445699999999999999987767778888888753
No 271
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=85.68 E-value=0.52 Score=41.81 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=18.3
Q ss_pred EEEeCCCcchhhHHHHHHHHHH
Q 015096 92 YMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~l 113 (413)
+|+-|.+|+||+|.|..||..+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3444899999999999999765
No 272
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=85.43 E-value=0.48 Score=48.67 Aligned_cols=41 Identities=20% Similarity=0.175 Sum_probs=28.3
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHH---HHC-CCCEEEEecCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKF---ANN-GHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~l---A~~-G~rVLlvD~D~~ 128 (413)
...++++.|-||+||||+|..++... ... ...|.-++.+..
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 34577778999999999999987543 221 124777776543
No 273
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=85.29 E-value=0.36 Score=48.45 Aligned_cols=49 Identities=18% Similarity=0.225 Sum_probs=35.0
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCC-CEEEEecCCCCCcchHhh
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGH-PTLVVSTDPAHSLSDSFA 136 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~-rVLlvD~D~~~~l~~~lg 136 (413)
.+.+++++ |..|+||||+...|+-.+...+. +++.+|.|++..+..+++
T Consensus 137 ~Ge~v~Iv-GpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq 186 (460)
T 2npi_A 137 EGPRVVIV-GGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPG 186 (460)
T ss_dssp SCCCEEEE-ESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSS
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeecc
Confidence 44556665 88899999999999987764433 557788888655555444
No 274
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=85.28 E-value=0.64 Score=44.10 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=24.4
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
+++.|..|+|||++|.++|..+ .+..++.+++
T Consensus 48 iLL~GppGtGKT~la~ala~~~--~~~~~~~i~~ 79 (322)
T 1xwi_A 48 ILLFGPPGTGKSYLAKAVATEA--NNSTFFSISS 79 (322)
T ss_dssp EEEESSSSSCHHHHHHHHHHHT--TSCEEEEEEC
T ss_pred EEEECCCCccHHHHHHHHHHHc--CCCcEEEEEh
Confidence 3445999999999999999876 3556666665
No 275
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=85.27 E-value=0.65 Score=49.95 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=30.1
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHH-CCCCEEEEec
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVST 125 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~-~G~rVLlvD~ 125 (413)
.+.++.|.+|+|||++.+.+...+.+ .+.+||++--
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~ 412 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAP 412 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 36677899999999999999888876 6889998874
No 276
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=85.21 E-value=2.3 Score=43.53 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=37.5
Q ss_pred CceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccCCC
Q 015096 313 STEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPS 356 (413)
Q Consensus 313 ~t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p~~ 356 (413)
.++.++|..+..---..++..++.+.++++|.. ++||++....
T Consensus 124 ~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i-~fINK~Dr~~ 166 (548)
T 3vqt_A 124 VDSALVVIDAAKGVEAQTRKLMDVCRMRATPVM-TFVNKMDREA 166 (548)
T ss_dssp CSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTSCC
T ss_pred cCceEEEeecCCCcccccHHHHHHHHHhCCceE-EEEecccchh
Confidence 358999999998889999999999999999974 8999987653
No 277
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=84.70 E-value=0.37 Score=42.11 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=17.8
Q ss_pred EEEEeCCCcchhhHHHHHHHHH
Q 015096 91 YYMLGGKGGVGKTSCAASLAVK 112 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~ 112 (413)
.+|++|..|+||||+...|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4678899999999998776443
No 278
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=84.57 E-value=0.71 Score=42.75 Aligned_cols=32 Identities=31% Similarity=0.291 Sum_probs=23.9
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
-+++.|..|+||||+|..+|..+ +....-+++
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~ 87 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATEC---SATFLNISA 87 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHT---TCEEEEEES
T ss_pred eEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeH
Confidence 34556999999999999998765 555555654
No 279
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=84.40 E-value=0.87 Score=42.85 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=27.1
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
++++.|..|+||||++..++..+ +.+++.+++.
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~---~~~~~~~~~~ 64 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLR 64 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhc---CCCEEEEEch
Confidence 67778999999999999988765 3468888875
No 280
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=84.38 E-value=0.62 Score=42.07 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.0
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
.++++.|..|+||||++..|+..+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 355566999999999999999776
No 281
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=84.38 E-value=0.6 Score=42.34 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=26.0
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+.++.+.|..|+||||++..||..+ | ...+|.|-
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l---g--~~~~d~g~ 42 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL---G--ARYLDTGA 42 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---C--CCcccCCc
Confidence 3466677999999999999998877 3 35677653
No 282
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=84.21 E-value=1.2 Score=40.96 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=27.6
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHC-CCCEEEEecC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTD 126 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~-G~rVLlvD~D 126 (413)
..++.+.|..|+||||+...++..+... ..++.+.+-+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 3466666999999999999999887653 4456555543
No 283
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=84.19 E-value=0.76 Score=44.21 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=24.6
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
-|++ .|..|+|||++|..+|..+ +..++.+++
T Consensus 86 ~iLL-~GppGtGKT~la~ala~~~---~~~~~~v~~ 117 (355)
T 2qp9_X 86 GILL-YGPPGTGKSYLAKAVATEA---NSTFFSVSS 117 (355)
T ss_dssp CEEE-ECSTTSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred eEEE-ECCCCCcHHHHHHHHHHHh---CCCEEEeeH
Confidence 3444 4999999999999999877 566666664
No 284
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=84.12 E-value=0.79 Score=43.29 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=24.5
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
-+++.|.+|+|||++|..+|..+ +.++..+++
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~ 84 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEA---NSTFFSVSS 84 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH---CCCEEEEch
Confidence 34556999999999999998765 566666664
No 285
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.11 E-value=0.6 Score=50.54 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=28.7
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHH-------CCCCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFAN-------NGHPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~-------~G~rVLlvD~ 125 (413)
-+++.|.+|+||||++-.+|..+.. .|.+++.+|+
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 3456699999999999999999976 4777877775
No 286
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=84.10 E-value=0.73 Score=44.34 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=24.9
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
-+++.|..|+|||++|..+|..+ |..++.+++
T Consensus 119 ~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~ 150 (357)
T 3d8b_A 119 GILLFGPPGTGKTLIGKCIASQS---GATFFSISA 150 (357)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred eEEEECCCCCCHHHHHHHHHHHc---CCeEEEEeh
Confidence 34455999999999999998654 677777775
No 287
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=84.02 E-value=0.57 Score=40.66 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=18.9
Q ss_pred EEEEeCCCcchhhHHHHHHHHHH
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
++++.|..|+||||++..|+..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 55666999999999999887655
No 288
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=83.95 E-value=3.8 Score=43.13 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=26.9
Q ss_pred CceEEEEEcCCc-ccHHHHHHHHHHHHhCCCCCCeEEEeccc
Q 015096 313 STEFVIVTIPTV-MAVSESSRLSESLKKENVPVKRLIVNQII 353 (413)
Q Consensus 313 ~t~~vlVt~p~~-~~~~~~~r~~~~l~~~g~~~~gvVvN~v~ 353 (413)
.+.+++|+.++. .+..+...+.+.+...+.+ .-+|+|++.
T Consensus 201 aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~-iiiVlNK~D 241 (695)
T 2j69_A 201 CHAILFVMRASQPCTLGERRYLENYIKGRGLT-VFFLVNAWD 241 (695)
T ss_dssp SSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC-EEEEEECGG
T ss_pred CCEEEEEEeCCCccchhHHHHHHHHHHhhCCC-EEEEEECcc
Confidence 357888888754 4555554444567767777 468999974
No 289
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=83.57 E-value=0.93 Score=48.28 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=31.5
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
-+++.|..|+|||++|..+|..+...+.+.+-+|+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s 558 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMS 558 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEech
Confidence 456679999999999999999998888899999974
No 290
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=83.45 E-value=0.35 Score=45.26 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=25.5
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCC--CEEEEec
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGH--PTLVVST 125 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~--rVLlvD~ 125 (413)
+++.|.+|+||||+|..+|..+...+. .++-+++
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 677799999999999999998864432 3444543
No 291
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=83.22 E-value=0.85 Score=41.81 Aligned_cols=37 Identities=30% Similarity=0.391 Sum_probs=30.8
Q ss_pred cCCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 85 AGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 85 ~~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.-.+|+++|+++-||.|+ ++|..|+++|.+|.++|-+
T Consensus 24 ~l~gk~vlVTGas~gIG~-----aia~~la~~G~~V~~~~r~ 60 (266)
T 3grp_A 24 KLTGRKALVTGATGGIGE-----AIARCFHAQGAIVGLHGTR 60 (266)
T ss_dssp CCTTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESC
T ss_pred ccCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 335689999999999886 5778899999999999865
No 292
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=83.18 E-value=1.1 Score=40.97 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=34.6
Q ss_pred hhhhcCCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 81 DEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 81 ~~~~~~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
..|..-.+++++|+++-||.|+ ++|..|+++|.+|.++|-+..
T Consensus 21 ~~m~~~~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~ 63 (260)
T 3un1_A 21 QSMMRNQQKVVVITGASQGIGA-----GLVRAYRDRNYRVVATSRSIK 63 (260)
T ss_dssp HHHHHTTCCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred hhhhCcCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCChh
Confidence 3344456789999999999996 677788999999999997654
No 293
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=83.13 E-value=1.2 Score=39.35 Aligned_cols=32 Identities=31% Similarity=0.548 Sum_probs=23.1
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
..+++.|..|+||||+|..|+ ++|. -+|..|-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La----~~g~--~iIsdDs 66 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELV----QRGH--RLIADDR 66 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHH----TTTC--EEEESSE
T ss_pred EEEEEECCCCCCHHHHHHHHH----HhCC--eEEecch
Confidence 345666899999999886654 5666 5677664
No 294
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=83.01 E-value=1.3 Score=42.88 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=28.6
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHC-CCCEEEEec
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVST 125 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~-G~rVLlvD~ 125 (413)
..++.+.|..|+||||+...|+..+... ..+|+.++-
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~ 173 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 173 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence 4456666899999999999999988765 456666663
No 295
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=82.76 E-value=1.4 Score=43.36 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=30.7
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
..++|.|++.+ ||||++.-++..|...|++|.++..
T Consensus 48 ~~~vI~VTGTn---GKtTT~~~l~~iL~~~G~~~g~~~s 83 (422)
T 1w78_A 48 APFVFTVAGTN---GKGTTCRTLESILMAAGYKVGVYSS 83 (422)
T ss_dssp SSEEEEEECSS---CHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CCcEEEEeCCc---ChHHHHHHHHHHHHHCCCCEEEECC
Confidence 34688888765 8999999999999999999987654
No 296
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=82.64 E-value=0.77 Score=42.95 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=23.3
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
.+++.|..|+||||+|..+|..+ +...+.++
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~ 81 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANEC---QANFISIK 81 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred eEEEECCCCcCHHHHHHHHHHHh---CCCEEEEE
Confidence 44555999999999999998765 45555555
No 297
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=82.64 E-value=1 Score=43.42 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=21.4
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHH
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFA 114 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA 114 (413)
...+++.|..|+||||++..||..+.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34456679999999999999998775
No 298
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=82.62 E-value=0.81 Score=39.61 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=18.7
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHP 119 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~r 119 (413)
=+++.|..|.||||+|..|.. +|++
T Consensus 18 gvli~G~SGaGKStlal~L~~----rG~~ 42 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALID----RGHQ 42 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHH----TTCE
T ss_pred EEEEEcCCCCCHHHHHHHHHH----cCCe
Confidence 344558999999999877664 6764
No 299
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=82.57 E-value=0.82 Score=43.25 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=29.7
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+.+++|..|+||||+--.|.... .|+|+.+|..|..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~G 41 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEFG 41 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSSCC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEecCc
Confidence 466777999999999988777543 6899999988754
No 300
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=82.52 E-value=1.4 Score=43.45 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=31.4
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
..++|.|++.+ ||||++.-++..|...|++|.++..
T Consensus 38 ~~~vI~VtGTn---GKtTT~~~l~~iL~~~G~~vg~~~s 73 (428)
T 1jbw_A 38 QGRYIHVTGTN---GKGSAANAIAHVLEASGLTVGLYTS 73 (428)
T ss_dssp SSCEEEEECSS---CHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred cCcEEEEECCC---ChHHHHHHHHHHHHHCCCCEEEEeC
Confidence 34688898776 8999999999999999999998755
No 301
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.52 E-value=0.5 Score=45.00 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=26.1
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+++.|..|+||||++..+|..+...+.++.++..|
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 83 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN 83 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence 56679999999999999999986544444444444
No 302
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=82.13 E-value=1.6 Score=39.03 Aligned_cols=35 Identities=11% Similarity=-0.076 Sum_probs=30.9
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
.|.|+.|--|.||||.....+..+..+|++|+++-
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 56677788899999999999999999999999994
No 303
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=81.98 E-value=0.76 Score=39.82 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=18.9
Q ss_pred EEEEeCCCcchhhHHHHHHHHHH
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
++.+.|..|+||||++..|+..+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 55566999999999999988754
No 304
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=81.95 E-value=0.69 Score=41.63 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=20.9
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFA 114 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA 114 (413)
.++++.|--|+||||++..|+..+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4566778899999999999998773
No 305
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=81.87 E-value=1.1 Score=42.19 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=25.9
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++.|..|+|||++|..+|.. .+.+...+++..
T Consensus 58 vll~G~~GtGKT~la~~ia~~---~~~~~~~~~~~~ 90 (338)
T 3pfi_A 58 ILFSGPAGLGKTTLANIISYE---MSANIKTTAAPM 90 (338)
T ss_dssp EEEECSTTSSHHHHHHHHHHH---TTCCEEEEEGGG
T ss_pred EEEECcCCCCHHHHHHHHHHH---hCCCeEEecchh
Confidence 466699999999999998665 467777777644
No 306
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=81.87 E-value=1.2 Score=40.97 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=30.9
Q ss_pred CCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 86 ~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
-.+++++|+++-+|.|+ ++|..|+++|.+|+++|-+.
T Consensus 28 l~~k~vlVTGas~GIG~-----aia~~l~~~G~~Vi~~~r~~ 64 (281)
T 3ppi_A 28 FEGASAIVSGGAGGLGE-----ATVRRLHADGLGVVIADLAA 64 (281)
T ss_dssp GTTEEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred cCCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEeCCh
Confidence 35689999999999886 57778889999999998754
No 307
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=81.87 E-value=1.3 Score=39.96 Aligned_cols=37 Identities=19% Similarity=0.407 Sum_probs=31.2
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+++++|+++-||.|+ ++|..|+++|.+|.++|-+..
T Consensus 21 m~k~vlITGas~gIG~-----~la~~l~~~G~~V~~~~r~~~ 57 (251)
T 3orf_A 21 MSKNILVLGGSGALGA-----EVVKFFKSKSWNTISIDFREN 57 (251)
T ss_dssp -CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred cCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCcc
Confidence 3578999999999886 677889999999999997764
No 308
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=81.86 E-value=0.8 Score=43.56 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=19.9
Q ss_pred EEEEeCCCcchhhHHHHHHHHHH
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
.+++.|..|+||||++-.+|..+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 45567999999999999999876
No 309
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=81.78 E-value=1.1 Score=39.72 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=28.2
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
||+++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 1 Mk~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~r~~ 35 (230)
T 3guy_A 1 MSLIVITGASSGLGA-----ELAKLYDAEGKATYLTGRSE 35 (230)
T ss_dssp --CEEEESTTSHHHH-----HHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEEecCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 468999999999887 56778889999999998653
No 310
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=81.58 E-value=0.72 Score=44.06 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=20.8
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHH
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFA 114 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA 114 (413)
.+++.|..|+|||++|..+|..+.
T Consensus 72 ~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 556678999999999999999885
No 311
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=81.51 E-value=0.79 Score=45.68 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=24.1
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
+++.|.+|+|||++|..+|..+.. .....-+++
T Consensus 66 iLl~GppGtGKT~la~ala~~l~~-~~~~~~~~~ 98 (456)
T 2c9o_A 66 VLLAGPPGTGKTALALAIAQELGS-KVPFCPMVG 98 (456)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCT-TSCEEEEEG
T ss_pred EEEECCCcCCHHHHHHHHHHHhCC-CceEEEEeH
Confidence 455699999999999999998732 144555553
No 312
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=81.50 E-value=0.95 Score=40.62 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=27.4
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+.|+.++|..|+||||+|..||..| |.+ ++|.|.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l---g~~--~~d~~~ 47 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL---GIH--FYDDDI 47 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH---TCE--EECHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc---CCc--EEcHHH
Confidence 4577778999999999999999877 444 588765
No 313
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.40 E-value=0.87 Score=42.35 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=25.8
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCC--CEEEEec
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGH--PTLVVST 125 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~--rVLlvD~ 125 (413)
+++.|.+|+||||++..+|..+...+. .++-+++
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 80 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA 80 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC
Confidence 677899999999999999998864332 3555554
No 314
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=81.38 E-value=1.4 Score=41.00 Aligned_cols=35 Identities=11% Similarity=0.147 Sum_probs=29.1
Q ss_pred CCcEEEEEeCCC--cchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 87 TQRKYYMLGGKG--GVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 87 ~~~~i~v~sgKG--GvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.+++++|+++-| |.|+ ++|..|+++|.+|.++|-+
T Consensus 29 ~~k~vlVTGasg~~GIG~-----~ia~~la~~G~~V~~~~r~ 65 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAW-----GIAKAVCAQGAEVALTYLS 65 (296)
T ss_dssp TTCEEEEECCCSTTSHHH-----HHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEEeCCCCCCHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 568899998876 7775 6788899999999999875
No 315
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=81.09 E-value=0.68 Score=39.86 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=20.2
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHH
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFA 114 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA 114 (413)
++++.|..|+||||+...|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 456679999999999999987764
No 316
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=80.97 E-value=1.5 Score=48.45 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=29.4
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHH--HHH-CCCCEEEEecCCCCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVK--FAN-NGHPTLVVSTDPAHS 130 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~--lA~-~G~rVLlvD~D~~~~ 130 (413)
..++.+.|-||+||||+|..++.. ... -...+..++.+...+
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d 194 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSS
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCC
Confidence 346666799999999999988853 232 234688888765433
No 317
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.97 E-value=1.3 Score=43.82 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=24.6
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
+.+.|.+|+|||++|.++|..+ |...+.|++
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~ 239 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANST---KAAFIRVNG 239 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHH---TCEEEEEEG
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Confidence 4455999999999999999776 566776764
No 318
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=80.90 E-value=0.55 Score=42.82 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=19.0
Q ss_pred EEEeCCCcchhhHHHHHHHHHH
Q 015096 92 YMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~l 113 (413)
+++.|..|+|||++|..+|..+
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 4566999999999999999876
No 319
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=80.68 E-value=1.3 Score=43.60 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=26.6
Q ss_pred CCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 96 GKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 96 gKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
|..|+|||+....+...+...|.+|+++|-
T Consensus 60 G~tGsGKs~~~~~li~~~~~~g~~viv~Dp 89 (437)
T 1e9r_A 60 GATGTGKSVLLRELAYTGLLRGDRMVIVDP 89 (437)
T ss_dssp ECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 888999999988888888889999999974
No 320
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=80.62 E-value=0.85 Score=41.74 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=24.1
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
++++.|..|+||||++..||..+ |. -.+|+|
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~l---g~--~~~d~d 80 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSL---GY--TFFDCD 80 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH---TC--EEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CC--cEEeCc
Confidence 44555999999999999999877 33 567776
No 321
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=80.45 E-value=2 Score=41.44 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=27.4
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHC-CCCEEEEe
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVS 124 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~-G~rVLlvD 124 (413)
-++.+.|..|+||||+...++..+... |.+++.+.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 367777999999999999999888764 55655544
No 322
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.38 E-value=1 Score=42.62 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=24.9
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHH---CCCCEEEEe
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFAN---NGHPTLVVS 124 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~---~G~rVLlvD 124 (413)
+++.|..|+||||++..+|..+.. ....+.-++
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 96 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN 96 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc
Confidence 567799999999999999998863 233455444
No 323
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=80.12 E-value=1.2 Score=39.94 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=24.4
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
++.+.|..|+||||++..||..+ | ...+|+|-
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~l---g--~~~~d~d~ 49 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDF---G--FTYLDTGA 49 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH---C--CEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---C--CceecCCC
Confidence 45556889999999999988766 4 35678763
No 324
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=80.05 E-value=1.2 Score=47.51 Aligned_cols=24 Identities=46% Similarity=0.552 Sum_probs=20.7
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHH
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFAN 115 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~ 115 (413)
+++.|.+|+|||++|-.+|..+..
T Consensus 204 vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 204 PVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp EEEESCTTTTTHHHHHHHHHHHHS
T ss_pred eEEECCCCCCHHHHHHHHHHHHhc
Confidence 456699999999999999998854
No 325
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=79.97 E-value=1.6 Score=39.23 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=29.9
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
||+++|+++-||.|+. +|..|+++|.+|.+++-+..
T Consensus 1 mk~vlVTGas~gIG~~-----~a~~l~~~G~~V~~~~r~~~ 36 (257)
T 1fjh_A 1 MSIIVISGCATGIGAA-----TRKVLEAAGHQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEeCCch
Confidence 4689999999999874 66778889999999987653
No 326
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=79.94 E-value=1.2 Score=41.24 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=25.9
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCC--CEEEEec
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGH--PTLVVST 125 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~--rVLlvD~ 125 (413)
+++.|..|+|||+++..+|..+...+. .++-+++
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 567799999999999999998864433 3555554
No 327
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=79.92 E-value=1.2 Score=41.75 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=25.5
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.++++.|..|+||||++..++..+ | ++.++++
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~---~--~~~~~~~ 63 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER---P--GILIDCR 63 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS---S--EEEEEHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc---C--cEEEEee
Confidence 466778999999999999887653 3 8888874
No 328
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=79.91 E-value=2.3 Score=37.34 Aligned_cols=37 Identities=16% Similarity=0.081 Sum_probs=32.4
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
-.|.|..|.-|.||||-....+.....+|++|+++..
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 4577888899999999999988888889999999984
No 329
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=79.55 E-value=1.6 Score=39.07 Aligned_cols=35 Identities=17% Similarity=0.404 Sum_probs=30.0
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ ++|..|+++|.+|.++|-+.
T Consensus 3 ~k~vlVTGas~GIG~-----a~a~~l~~~G~~V~~~~r~~ 37 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGR-----ALTIGLVERGHQVSMMGRRY 37 (235)
T ss_dssp CCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 478999999999997 67788899999999998753
No 330
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=79.48 E-value=1.5 Score=47.46 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=32.7
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.-+++.|..|+|||++|..+|..+...+.+.+.||+.-
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~ 626 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 626 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 35667799999999999999999988788899998754
No 331
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=79.30 E-value=1.4 Score=39.73 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=30.3
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+|+++|+++-||.|+ ++|..|+++|.+|+++|-+.
T Consensus 8 ~gk~~lVTGas~gIG~-----a~a~~l~~~G~~V~~~~r~~ 43 (248)
T 3op4_A 8 EGKVALVTGASRGIGK-----AIAELLAERGAKVIGTATSE 43 (248)
T ss_dssp TTCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4589999999999886 57788999999999998653
No 332
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=79.29 E-value=1.2 Score=44.37 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=24.0
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
+++.|.+|+|||++|.++|..+ .+..++-+++
T Consensus 170 vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~ 201 (444)
T 2zan_A 170 ILLFGPPGTGKSYLAKAVATEA--NNSTFFSISS 201 (444)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC--CSSEEEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeH
Confidence 4445999999999999999876 3555666654
No 333
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=79.22 E-value=1.8 Score=42.87 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=31.0
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
..++|.|++.+ ||||++.-++..|...|++|.+...
T Consensus 51 ~~~vI~VTGTn---GKtTT~~~l~~iL~~~G~~vg~~~S 86 (442)
T 1o5z_A 51 EYKTIHIGGTN---GKGSVANMVSNILVSQGYRVGSYYS 86 (442)
T ss_dssp SSEEEEEECSS---SHHHHHHHHHHHHHHHTCCEEEECC
T ss_pred cCCEEEEECCc---CHHHHHHHHHHHHHHCCCCEEEECC
Confidence 34688888776 8999999999999999999998754
No 334
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=79.21 E-value=1.2 Score=42.48 Aligned_cols=26 Identities=42% Similarity=0.561 Sum_probs=21.8
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFAN 115 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~ 115 (413)
..+++.|..|+||||++..+|..+..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35677799999999999999988753
No 335
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=79.20 E-value=0.89 Score=39.96 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=25.5
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+.|+..+|--|+||||++..||..| |.+ ++|.|
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l---g~~--~~D~~ 38 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY---NIP--LYSKE 38 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT---TCC--EECHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh---CcC--EECHH
Confidence 3467777999999999999999877 555 44644
No 336
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=79.14 E-value=1.6 Score=39.82 Aligned_cols=34 Identities=26% Similarity=0.557 Sum_probs=30.0
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
|+++|+++-+|-|+ .+|..|+++|.+|+++|.|.
T Consensus 3 K~vlVTGas~GIG~-----aia~~la~~Ga~V~~~~~~~ 36 (247)
T 3ged_A 3 RGVIVTGGGHGIGK-----QICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp CEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEecCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 78999999999997 56788999999999999764
No 337
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=79.11 E-value=1.9 Score=39.39 Aligned_cols=35 Identities=26% Similarity=0.652 Sum_probs=30.2
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 16 ~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 50 (266)
T 3p19_A 16 KKLVVITGASSGIGE-----AIARRFSEEGHPLLLLARRV 50 (266)
T ss_dssp CCEEEEESTTSHHHH-----HHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 478999999999997 57788999999999998653
No 338
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=79.04 E-value=2.3 Score=42.85 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=30.9
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
..++|.|++.+ ||||++.-++..|...|+||.++..
T Consensus 63 ~~~vI~VtGTN---GKtST~~~l~~iL~~~G~~vG~~tS 98 (487)
T 2vos_A 63 SYPSIHIAGTN---GKTSVARMVDALVTALHRRTGRTTS 98 (487)
T ss_dssp SSCEEEEECSS---SHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred cCeEEEEeCCC---CcHHHHHHHHHHHHHcCCCeEEECC
Confidence 44688898776 8999999999999999999987644
No 339
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=79.02 E-value=2 Score=42.34 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=30.3
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
..-++.+.|..|+||||+...++..+.....++..++-++
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 3456777799999999999999888765555677766443
No 340
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=78.91 E-value=3.4 Score=38.21 Aligned_cols=37 Identities=22% Similarity=0.549 Sum_probs=31.2
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+++++|+++-||.|+ ++|..|+++|.+|++++.+..
T Consensus 46 ~gk~vlVTGas~GIG~-----aia~~la~~G~~V~~~~r~~~ 82 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGR-----AVSIAFAKEGANIAIAYLDEE 82 (291)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCH
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCch
Confidence 4589999999999886 577788999999999997653
No 341
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=78.88 E-value=0.99 Score=45.01 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=23.0
Q ss_pred hhhhcCCCcEEEEEeCCCcchhhHHHHHHHHHH
Q 015096 81 DEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 81 ~~~~~~~~~~i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
...+......-+++.|..|+||||+|..+|..+
T Consensus 42 ~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 42 PRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp HHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 333433322346667999999999999998764
No 342
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=78.78 E-value=1.4 Score=38.42 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.5
Q ss_pred EEeCCCcchhhHHHHHHHHHHHHCC
Q 015096 93 MLGGKGGVGKTSCAASLAVKFANNG 117 (413)
Q Consensus 93 v~sgKGGvGKTTvAa~LA~~lA~~G 117 (413)
.+-|..|+||||+...++..+...|
T Consensus 5 ~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 5 FLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp EEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEECCCCChHHHHHHHHHhhcccCC
Confidence 3449999999999999999888667
No 343
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=78.76 E-value=1 Score=40.72 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=18.5
Q ss_pred EEEeCCCcchhhHHHHHHHHHH
Q 015096 92 YMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~l 113 (413)
+++.|..|+||||++..+|..+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4556999999999999998755
No 344
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=78.69 E-value=1.4 Score=37.89 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=18.7
Q ss_pred EEeCCCcchhhHHHHHHHHHHH
Q 015096 93 MLGGKGGVGKTSCAASLAVKFA 114 (413)
Q Consensus 93 v~sgKGGvGKTTvAa~LA~~lA 114 (413)
.+.|..|+||||+...++..+.
T Consensus 4 ~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 4 IITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEECCTTSSHHHHHHHHHHHHG
T ss_pred EEECCCCCCHHHHHHHHHHHhC
Confidence 4459999999999999998773
No 345
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=78.60 E-value=1.6 Score=39.86 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=30.8
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+++++|+++-||.|+ ++|..|+++|.+|.++|-+..
T Consensus 26 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~ 62 (260)
T 3gem_A 26 SSAPILITGASQRVGL-----HCALRLLEHGHRVIISYRTEH 62 (260)
T ss_dssp -CCCEEESSTTSHHHH-----HHHHHHHHTTCCEEEEESSCC
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCChH
Confidence 4578999999999887 677888999999999997653
No 346
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=78.59 E-value=1.6 Score=43.38 Aligned_cols=31 Identities=35% Similarity=0.419 Sum_probs=24.5
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
+++.|.+|+||||+|..||..+ |...+.+|+
T Consensus 53 iLl~GppGtGKT~lar~lA~~l---~~~~~~v~~ 83 (444)
T 1g41_A 53 ILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (444)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred EEEEcCCCCCHHHHHHHHHHHc---CCCceeecc
Confidence 3345889999999999998766 667777775
No 347
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=78.55 E-value=0.89 Score=39.98 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=24.5
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
++++.|..|+||||++..||..+ | .-++|+|.
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~---g--~~~~~~d~ 36 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL---S--MIYVDTGA 36 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT---T--CEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---C--CceecCCh
Confidence 56667999999999999887654 4 35678763
No 348
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=78.53 E-value=1.1 Score=40.64 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=18.4
Q ss_pred EEEEeCCCcchhhHHHHHHHHHH
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
++.+.|..|+||||++-.||..|
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 44455899999999999998655
No 349
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=78.50 E-value=1.3 Score=36.13 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=26.3
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
+.+++|......--.....+.+.++..+.++ -+|.|+..-
T Consensus 81 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl 120 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQADYEVAEYLRRKGKPV-ILVATKVDD 120 (161)
T ss_dssp SEEEEEEESSSCCCHHHHHHHHHHHHHTCCE-EEEEECCCS
T ss_pred CEEEEEEECCCcccHhHHHHHHHHHhcCCCE-EEEEECccc
Confidence 4788888776532233355667777777775 689999643
No 350
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=78.45 E-value=1.8 Score=39.16 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=31.0
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+++++|+++-+|.|+ ++|..|+++|.+|.++|-+..
T Consensus 6 ~~k~vlVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~~ 42 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGA-----EIAKKFAAEGFTVFAGRRNGE 42 (252)
T ss_dssp CSCEEEEECCSSHHHH-----HHHHHHHHTTCEEEEEESSGG
T ss_pred CCCEEEEECCCchHHH-----HHHHHHHHCCCEEEEEeCCHH
Confidence 4578999999999886 677788899999999987643
No 351
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=78.40 E-value=1.6 Score=40.00 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=31.2
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+|+++|+++-||.|+ ++|..|+++|.+|+++|.+..
T Consensus 13 ~~k~vlVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~~ 49 (269)
T 3vtz_A 13 TDKVAIVTGGSSGIGL-----AVVDALVRYGAKVVSVSLDEK 49 (269)
T ss_dssp TTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESCC-
T ss_pred CCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCCch
Confidence 4689999999999987 577889999999999997654
No 352
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=78.36 E-value=2.5 Score=41.86 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=31.1
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
..++|.|++.+ ||||++.-++..|...|+||.+...
T Consensus 51 ~~~vI~VtGTN---GKgSt~~~l~~iL~~~G~~vg~~tS 86 (437)
T 3nrs_A 51 APKIFTVAGTN---GKGTTCCTLEAILLAAGLRVGVYSS 86 (437)
T ss_dssp SSEEEEEECSS---SHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred cCCEEEEECCc---ChHHHHHHHHHHHHHCCCcEEEECC
Confidence 45788888665 8999999999999999999998765
No 353
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=78.34 E-value=0.41 Score=39.46 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=16.5
Q ss_pred EEEeCCCcchhhHHHHHHHHH
Q 015096 92 YMLGGKGGVGKTSCAASLAVK 112 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~ 112 (413)
+++.|..|+|||++|..++..
T Consensus 30 vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCT
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 345699999999998877653
No 354
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.32 E-value=1.8 Score=43.03 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=25.9
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
.+-|+++ |.+|+|||++|.++|..+ |...+.|++
T Consensus 215 prGvLL~-GPPGtGKTllAkAiA~e~---~~~~~~v~~ 248 (437)
T 4b4t_L 215 PKGVLLY-GPPGTGKTLLAKAVAATI---GANFIFSPA 248 (437)
T ss_dssp CCEEEEE-SCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCeEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence 3455554 999999999999998765 566777764
No 355
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=78.15 E-value=1.6 Score=37.75 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=24.7
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHC------CCCEEEEe
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANN------GHPTLVVS 124 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~------G~rVLlvD 124 (413)
+++.+.-|.|||.++...+..+... +.+++++-
T Consensus 51 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~ 89 (216)
T 3b6e_A 51 IIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLV 89 (216)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEE
Confidence 4556899999999999888766532 56777663
No 356
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=78.05 E-value=2 Score=38.33 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=31.0
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+++++|+++-||.|+ ++|..|+++|.+|.+++-++.
T Consensus 6 ~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~~ 42 (241)
T 1dhr_A 6 EARRVLVYGGRGALGS-----RCVQAFRARNWWVASIDVVEN 42 (241)
T ss_dssp CCCEEEEETTTSHHHH-----HHHHHHHTTTCEEEEEESSCC
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHhCCCEEEEEeCChh
Confidence 3478999999999887 567788899999999997764
No 357
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=77.95 E-value=2.2 Score=38.59 Aligned_cols=37 Identities=22% Similarity=0.472 Sum_probs=31.3
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+|+++|+++-||.|+ ++|..|+++|.+|+++|-+..
T Consensus 6 ~~k~~lVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~ 42 (257)
T 3tpc_A 6 KSRVFIVTGASSGLGA-----AVTRMLAQEGATVLGLDLKPP 42 (257)
T ss_dssp TTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred CCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCChH
Confidence 4579999999999996 577888999999999997754
No 358
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=77.84 E-value=2 Score=38.06 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=29.5
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 2 ~k~vlITGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 36 (235)
T 3l77_A 2 MKVAVITGASRGIGE-----AIARALARDGYALALGARSV 36 (235)
T ss_dssp CCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 578999999999886 56778889999999998654
No 359
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=77.67 E-value=2.2 Score=39.04 Aligned_cols=37 Identities=16% Similarity=0.298 Sum_probs=31.2
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+++++|+++-||.|+ ++|..|+++|.+|.++|-+..
T Consensus 10 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~ 46 (271)
T 3tzq_B 10 ENKVAIITGACGGIGL-----ETSRVLARAGARVVLADLPET 46 (271)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEECTTS
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEcCCHH
Confidence 3579999999999886 577788999999999997654
No 360
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=77.67 E-value=2 Score=38.77 Aligned_cols=36 Identities=19% Similarity=0.497 Sum_probs=30.2
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+|+++|+++-||.|+ ++|..|+++|.+|+++|-+.
T Consensus 11 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 46 (252)
T 3f1l_A 11 NDRIILVTGASDGIGR-----EAAMTYARYGATVILLGRNE 46 (252)
T ss_dssp TTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3579999999999986 56778889999999998653
No 361
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=77.66 E-value=1.7 Score=40.04 Aligned_cols=36 Identities=22% Similarity=0.404 Sum_probs=30.7
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++++|+++-||.|+ ++|..|+++|.+|+++|-+.
T Consensus 28 ~gk~vlVTGas~gIG~-----aia~~la~~G~~V~~~~r~~ 63 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGL-----AVARRLADEGCHVLCADIDG 63 (277)
T ss_dssp TTCEEEETTTTSTHHH-----HHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4579999999999997 57788899999999998654
No 362
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=77.55 E-value=1.4 Score=39.33 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=25.7
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
.++++.|-.|+||||.+..|+..|.. ++.++-
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~---~~~~~~ 37 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQP---NCKLLK 37 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCS---SEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc---cceEEE
Confidence 46777899999999999999998865 455443
No 363
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=77.47 E-value=1.7 Score=38.86 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=30.2
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++++|+++-||.|+ ++|..|+++|.+|++++-+.
T Consensus 13 ~~k~vlITGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 48 (247)
T 3i1j_A 13 KGRVILVTGAARGIGA-----AAARAYAAHGASVVLLGRTE 48 (247)
T ss_dssp TTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEecCH
Confidence 3578999999999997 56788889999999998653
No 364
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=77.46 E-value=1.8 Score=38.97 Aligned_cols=36 Identities=22% Similarity=0.506 Sum_probs=30.2
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+|+++|+++-||.|+ ++|..|+++|.+|.++|-+.
T Consensus 5 ~gk~vlVTGas~gIG~-----a~a~~l~~~G~~V~~~~r~~ 40 (247)
T 3rwb_A 5 AGKTALVTGAAQGIGK-----AIAARLAADGATVIVSDINA 40 (247)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEECSCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3578999999999887 67788899999999988654
No 365
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=77.38 E-value=2 Score=38.25 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=30.5
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+++++|+++-||.|+ ++|..|+++|.+|.+++-++.
T Consensus 3 ~k~vlITGas~gIG~-----~~a~~l~~~G~~V~~~~r~~~ 38 (236)
T 1ooe_A 3 SGKVIVYGGKGALGS-----AILEFFKKNGYTVLNIDLSAN 38 (236)
T ss_dssp CEEEEEETTTSHHHH-----HHHHHHHHTTEEEEEEESSCC
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEecCcc
Confidence 478999999999886 577788899999999997764
No 366
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=77.37 E-value=1.4 Score=41.77 Aligned_cols=35 Identities=26% Similarity=0.172 Sum_probs=27.6
Q ss_pred cEEEEEeC-CCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 89 RKYYMLGG-KGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 89 ~~i~v~sg-KGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
++|+|-+- -||+|||-++..|+..|. ++++.+|+-
T Consensus 37 PVI~VGNitvGGTGKTP~vi~L~~~L~--~~~~~ilsR 72 (315)
T 4ehx_A 37 PVISVGNLSVGGSGKTSFVMYLADLLK--DKRVCILSR 72 (315)
T ss_dssp CEEEEEESBSSCCSHHHHHHHHHHHTT--TSCEEEEEC
T ss_pred CEEEECCEEeCCCChHHHHHHHHHHHh--hcCceEEee
Confidence 57777554 699999999999999884 566777763
No 367
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=77.33 E-value=1.9 Score=39.55 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=29.0
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
.+++++|+++-||.|+ ++|..|+++|.+|+++|
T Consensus 30 ~gk~~lVTGas~GIG~-----aia~~la~~G~~V~~~~ 62 (273)
T 3uf0_A 30 AGRTAVVTGAGSGIGR-----AIAHGYARAGAHVLAWG 62 (273)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEc
Confidence 4589999999999886 67788999999999998
No 368
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=77.32 E-value=2 Score=39.23 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=30.6
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++++|+++-||.|+ ++|..|+++|.+|+++|.+.
T Consensus 12 ~gk~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 47 (278)
T 3sx2_A 12 TGKVAFITGAARGQGR-----AHAVRLAADGADIIAVDLCD 47 (278)
T ss_dssp TTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEECCS
T ss_pred CCCEEEEECCCChHHH-----HHHHHHHHCCCeEEEEeccc
Confidence 3579999999999997 56778889999999999764
No 369
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=77.26 E-value=1.3 Score=39.52 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.0
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
.++++.|..|+||||+.-.|+..+
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 467777999999999998887654
No 370
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=77.22 E-value=2.4 Score=37.93 Aligned_cols=36 Identities=17% Similarity=0.351 Sum_probs=30.0
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 10 ~~k~vlITGasggiG~-----~la~~l~~~G~~V~~~~r~~ 45 (254)
T 2wsb_A 10 DGACAAVTGAGSGIGL-----EICRAFAASGARLILIDREA 45 (254)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3578999999999987 56778889999999998653
No 371
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=77.12 E-value=1.8 Score=41.90 Aligned_cols=32 Identities=28% Similarity=0.298 Sum_probs=24.6
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
-+++.|..|+|||++|..+|.. .|..++-+++
T Consensus 150 ~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~ 181 (389)
T 3vfd_A 150 GLLLFGPPGNGKTMLAKAVAAE---SNATFFNISA 181 (389)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH---TTCEEEEECS
T ss_pred eEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeH
Confidence 4555699999999999998655 4667777765
No 372
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A
Probab=77.12 E-value=2.1 Score=38.16 Aligned_cols=36 Identities=28% Similarity=0.578 Sum_probs=30.2
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+++++|+++-||.|+ ++|..|+++|.+|.+++-++.
T Consensus 2 ~k~vlVTGas~giG~-----~~a~~l~~~G~~V~~~~r~~~ 37 (239)
T 2ekp_A 2 ERKALVTGGSRGIGR-----AIAEALVARGYRVAIASRNPE 37 (239)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCH
T ss_pred CCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCHH
Confidence 368999999999997 567788899999999987653
No 373
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Probab=77.11 E-value=2.5 Score=38.50 Aligned_cols=36 Identities=19% Similarity=0.459 Sum_probs=30.7
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+++++|+++-||.|+ ++|..|+++|.+|.+++-+..
T Consensus 8 ~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~~ 43 (264)
T 2dtx_A 8 DKVVIVTGASMGIGR-----AIAERFVDEGSKVIDLSIHDP 43 (264)
T ss_dssp TCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred CCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEecCcc
Confidence 478999999999997 467788899999999987654
No 374
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}
Probab=77.09 E-value=1.5 Score=40.17 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=30.9
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+++++|+++-||.|+ ++|..|+++|.+|.++|-+..
T Consensus 27 ~gk~vlVTGas~gIG~-----aia~~la~~G~~V~~~~r~~~ 63 (266)
T 3uxy_A 27 EGKVALVTGAAGGIGG-----AVVTALRAAGARVAVADRAVA 63 (266)
T ss_dssp TTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEECSSCCT
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCHH
Confidence 4589999999999987 577888999999999886543
No 375
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=77.08 E-value=2.1 Score=39.50 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=30.4
Q ss_pred cCCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 85 AGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 85 ~~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.-.+++++|+++-||.|+ ++|..|+++|.+|.++|-+.
T Consensus 25 ~~~~k~~lVTGas~GIG~-----aia~~la~~G~~V~~~~r~~ 62 (283)
T 3v8b_A 25 NQPSPVALITGAGSGIGR-----ATALALAADGVTVGALGRTR 62 (283)
T ss_dssp --CCCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEESSH
T ss_pred CCCCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 335689999999999886 56778889999999998653
No 376
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=76.94 E-value=2.1 Score=38.77 Aligned_cols=36 Identities=19% Similarity=0.446 Sum_probs=30.5
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+|+++|+++-||.|+ ++|..|+++|.+|+++|-+.
T Consensus 7 ~gk~~lVTGas~gIG~-----a~a~~l~~~G~~V~~~~r~~ 42 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGL-----ATVRRLVEGGAEVLLTGRNE 42 (255)
T ss_dssp TTCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4578999999999987 57888899999999998653
No 377
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2
Probab=76.83 E-value=2.4 Score=38.30 Aligned_cols=36 Identities=25% Similarity=0.521 Sum_probs=30.4
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+++++|+++-||.|+ ++|..|+++|.+|.++|-+..
T Consensus 6 ~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~~ 41 (256)
T 2d1y_A 6 GKGVLVTGGARGIGR-----AIAQAFAREGALVALCDLRPE 41 (256)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSTT
T ss_pred CCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCChh
Confidence 478999999999997 567788899999999987654
No 378
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=76.81 E-value=2.9 Score=38.37 Aligned_cols=36 Identities=22% Similarity=0.500 Sum_probs=30.7
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 31 ~gk~~lVTGas~GIG~-----aia~~la~~G~~V~~~~r~~ 66 (276)
T 3r1i_A 31 SGKRALITGASTGIGK-----KVALAYAEAGAQVAVAARHS 66 (276)
T ss_dssp TTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESSG
T ss_pred CCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4589999999999996 57788899999999998754
No 379
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}
Probab=76.72 E-value=2.4 Score=38.08 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=30.4
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+++++|+++-||.|+ ++|..|+++|.+|.+++-+..
T Consensus 7 ~k~vlVTGas~giG~-----~ia~~l~~~G~~V~~~~r~~~ 42 (250)
T 2fwm_X 7 GKNVWVTGAGKGIGY-----ATALAFVEAGAKVTGFDQAFT 42 (250)
T ss_dssp TCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCCC
T ss_pred CCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCchh
Confidence 478999999999998 467788899999999987654
No 380
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=76.64 E-value=2.2 Score=38.34 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=30.4
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++++|+++-||.|+ ++|..|+++|.+|.++|-+.
T Consensus 8 ~~k~vlITGas~giG~-----~~a~~l~~~G~~V~~~~r~~ 43 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQ-----AYAEALAREGAAVVVADINA 43 (253)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEcCCH
Confidence 3578999999999886 67888999999999998653
No 381
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=76.61 E-value=2.2 Score=38.57 Aligned_cols=36 Identities=17% Similarity=0.416 Sum_probs=30.3
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++++|+++-||.|+ ++|..|+++|.+|.++|-+.
T Consensus 7 ~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 42 (259)
T 4e6p_A 7 EGKSALITGSARGIGR-----AFAEAYVREGATVAIADIDI 42 (259)
T ss_dssp TTCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4578999999999987 57788899999999998653
No 382
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=76.60 E-value=2.1 Score=39.82 Aligned_cols=37 Identities=19% Similarity=0.385 Sum_probs=31.5
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+++++|+++-+|.|+ ++|..|+++|.+|+++|.+..
T Consensus 27 ~gk~~lVTGas~GIG~-----aia~~la~~G~~V~~~~~~~~ 63 (299)
T 3t7c_A 27 EGKVAFITGAARGQGR-----SHAITLAREGADIIAIDVCKQ 63 (299)
T ss_dssp TTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEECCSC
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEecccc
Confidence 4579999999999997 577889999999999997643
No 383
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=76.55 E-value=2.1 Score=39.30 Aligned_cols=36 Identities=33% Similarity=0.549 Sum_probs=30.4
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++++|+++-||.|+ ++|..|+++|.+|+++|-+.
T Consensus 26 ~~k~vlVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~ 61 (277)
T 4dqx_A 26 NQRVCIVTGGGSGIGR-----ATAELFAKNGAYVVVADVNE 61 (277)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4579999999999887 57788899999999998653
No 384
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=76.46 E-value=2.3 Score=38.51 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=29.9
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 8 ~~k~vlVTGas~giG~-----~ia~~l~~~G~~V~~~~r~~ 43 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGY-----GIVEELASLGASVYTCSRNQ 43 (260)
T ss_dssp TTCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3478999999999997 56778888999999998653
No 385
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=76.43 E-value=1.3 Score=40.95 Aligned_cols=31 Identities=32% Similarity=0.380 Sum_probs=22.9
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
+.+.|..|+||||++-.+|..+ +...+.++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~---~~~~i~i~g 77 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES---GLNFISVKG 77 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT---TCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHc---CCCEEEEEc
Confidence 4556999999999999998754 344555554
No 386
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=76.42 E-value=2.5 Score=44.84 Aligned_cols=45 Identities=24% Similarity=0.400 Sum_probs=33.7
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC---CCcchHhhcc
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA---HSLSDSFAQD 138 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~---~~l~~~lg~~ 138 (413)
-+++.|..|+|||++|..+|..+ |.+.+-+|+.-. ++.+.++|.+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~~~~~~~~~l~g~~ 537 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAP 537 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCSSSSCCSSSCCCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhhcchhhHhhhcCCC
Confidence 45667999999999999999988 677888886432 3556666543
No 387
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=76.37 E-value=2.3 Score=37.84 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=28.8
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
|++++|+++-||.|+. ++..|+++|.+|.+++-++.
T Consensus 1 Mk~vlVtGasg~iG~~-----l~~~L~~~g~~V~~~~r~~~ 36 (255)
T 2dkn_A 1 MSVIAITGSASGIGAA-----LKELLARAGHTVIGIDRGQA 36 (255)
T ss_dssp -CEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSSS
T ss_pred CcEEEEeCCCcHHHHH-----HHHHHHhCCCEEEEEeCChh
Confidence 4689999999998874 56677889999999987654
No 388
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=76.24 E-value=2.2 Score=45.28 Aligned_cols=29 Identities=34% Similarity=0.530 Sum_probs=23.5
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANN 116 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~ 116 (413)
.+.-+++.|..|+|||+++..+|..+...
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~ 234 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 34445667999999999999999988763
No 389
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=76.19 E-value=3.2 Score=41.79 Aligned_cols=36 Identities=28% Similarity=0.184 Sum_probs=30.7
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
..++|.|++.. ||||++.-++..|...|++|.++..
T Consensus 107 ~~~vI~VTGTn---GKTTT~~ml~~iL~~~g~~~~~~gs 142 (498)
T 1e8c_A 107 NLRLVGVTGTN---GKTTTTQLLAQWSQLLGEISAVMGT 142 (498)
T ss_dssp SSEEEEEESSS---CHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred cCeEEEEeCCc---ChHHHHHHHHHHHHhCCCCEEEECC
Confidence 35688888665 8999999999999999999988754
No 390
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=76.15 E-value=2.4 Score=38.09 Aligned_cols=35 Identities=26% Similarity=0.545 Sum_probs=29.9
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ ++|..|+++|.+|.++|-++
T Consensus 7 ~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 41 (249)
T 2ew8_A 7 DKLAVITGGANGIGR-----AIAERFAVEGADIAIADLVP 41 (249)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEcCCc
Confidence 478999999999997 56778888999999998765
No 391
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=76.08 E-value=2 Score=38.45 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=30.1
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ ++|..|+++|.+|++++-+.
T Consensus 5 ~k~vlITGas~gIG~-----~~a~~l~~~G~~v~~~~r~~ 39 (247)
T 3lyl_A 5 EKVALVTGASRGIGF-----EVAHALASKGATVVGTATSQ 39 (247)
T ss_dssp TCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEESSH
T ss_pred CCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 478999999999986 67788899999999998754
No 392
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=76.00 E-value=2.2 Score=39.07 Aligned_cols=36 Identities=31% Similarity=0.708 Sum_probs=30.6
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++++|+++-||.|+ ++|..|+++|.+|.++|-+.
T Consensus 10 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 45 (281)
T 3svt_A 10 QDRTYLVTGGGSGIGK-----GVAAGLVAAGASVMIVGRNP 45 (281)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4579999999999887 57788899999999998654
No 393
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=75.96 E-value=1.9 Score=38.97 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=30.3
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++++|+++-||.|+ ++|..|+++|.+|++++-+.
T Consensus 6 ~~k~~lVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~ 41 (250)
T 3nyw_A 6 QKGLAIITGASQGIGA-----VIAAGLATDGYRVVLIARSK 41 (250)
T ss_dssp CCCEEEEESTTSHHHH-----HHHHHHHHHTCEEEEEESCH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 4579999999999997 67778888999999998654
No 394
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=75.92 E-value=1.1 Score=42.34 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=19.3
Q ss_pred EEEeCCCcchhhHHHHHHHHHHH
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFA 114 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA 114 (413)
+++.|..|+|||++|..+|..+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 55569999999999999998664
No 395
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=75.90 E-value=1.4 Score=39.75 Aligned_cols=36 Identities=14% Similarity=0.067 Sum_probs=29.6
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
||+++|+++-||.|+ .+|..|+++|.+|.++|-+..
T Consensus 1 Mk~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~~ 36 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGM-----GSALRLSEAGHTVACHDESFK 36 (254)
T ss_dssp -CEEEESSTTSTTHH-----HHHHHHHHTTCEEEECCGGGG
T ss_pred CeEEEEeCCCchHHH-----HHHHHHHHCCCEEEEEeCCHH
Confidence 468999999999997 477788899999999886643
No 396
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=75.83 E-value=2.8 Score=37.97 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=29.2
Q ss_pred CCcEEEEEeCCC-cchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKG-GVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKG-GvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++++|+++-| |.|+ ++|..|+++|.+|+++|-+.
T Consensus 21 ~~k~vlITGasg~GIG~-----~~a~~l~~~G~~V~~~~r~~ 57 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGS-----TTARRALLEGADVVISDYHE 57 (266)
T ss_dssp TTCEEEESSCSSSSHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCCCchHH-----HHHHHHHHCCCEEEEecCCH
Confidence 457889988866 8886 67788899999999998754
No 397
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=75.71 E-value=2.7 Score=38.14 Aligned_cols=37 Identities=24% Similarity=0.549 Sum_probs=32.1
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+|+++|+++-+|-|+ .+|..|+++|.+|+++|.|..
T Consensus 10 ~GK~alVTGas~GIG~-----aia~~la~~Ga~Vv~~~~~~~ 46 (242)
T 4b79_A 10 AGQQVLVTGGSSGIGA-----AIAMQFAELGAEVVALGLDAD 46 (242)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSTT
T ss_pred CCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCCHH
Confidence 3689999999999997 468889999999999998754
No 398
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A
Probab=75.58 E-value=2.8 Score=37.91 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=32.1
Q ss_pred hhcCCCcEEEEEeCC--CcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 83 MVAGTQRKYYMLGGK--GGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 83 ~~~~~~~~i~v~sgK--GGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+..-.+++++|+++- +|.|+ ++|..|+++|.+|++++.+..
T Consensus 15 ~~~l~~k~vlITGas~~~giG~-----~~a~~l~~~G~~v~~~~~~~~ 57 (267)
T 3gdg_A 15 QLSLKGKVVVVTGASGPKGMGI-----EAARGCAEMGAAVAITYASRA 57 (267)
T ss_dssp HHCCTTCEEEETTCCSSSSHHH-----HHHHHHHHTSCEEEECBSSSS
T ss_pred ccCcCCCEEEEECCCCCCChHH-----HHHHHHHHCCCeEEEEeCCcc
Confidence 334456889999887 78776 678889999999999987654
No 399
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=75.58 E-value=1.4 Score=40.50 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=18.6
Q ss_pred EEEeCCCcchhhHHHHHHHHHH
Q 015096 92 YMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~l 113 (413)
+++.|..|+||||++..+|..+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 4566999999999999998765
No 400
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=75.55 E-value=2.8 Score=38.50 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=31.8
Q ss_pred CCCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 86 ~~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
-.+++++|+++-+|.|+ ++|..|+++|.+|.++|-+..
T Consensus 31 l~gk~~lVTGas~GIG~-----aia~~la~~G~~V~~~~r~~~ 68 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGA-----AIAEGLAGAGAHVILHGVKPG 68 (275)
T ss_dssp CTTCEEEETTCSSHHHH-----HHHHHHHHTTCEEEEEESSTT
T ss_pred CCCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEcCCHH
Confidence 35689999999999886 577788899999999998654
No 401
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=75.53 E-value=2 Score=39.99 Aligned_cols=37 Identities=30% Similarity=0.590 Sum_probs=31.2
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+|+++|+++-||.|+ ++|..|+++|.+|.++|-+..
T Consensus 40 ~~k~vlVTGas~GIG~-----aia~~la~~G~~V~~~~r~~~ 76 (293)
T 3rih_A 40 SARSVLVTGGTKGIGR-----GIATVFARAGANVAVAARSPR 76 (293)
T ss_dssp TTCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEESSGG
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEECCHH
Confidence 4689999999999887 567788999999999997643
No 402
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=75.45 E-value=2 Score=38.99 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=30.4
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+|+++|+++-||.|+ ++|..|+++|.+|.++|-+.
T Consensus 9 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 44 (262)
T 3pk0_A 9 QGRSVVVTGGTKGIGR-----GIATVFARAGANVAVAGRST 44 (262)
T ss_dssp TTCEEEETTCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4589999999999887 46778899999999998654
No 403
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=75.44 E-value=2.4 Score=38.84 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=30.8
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++++|+++-||.|+ ++|..|+++|.+|+++|.+.
T Consensus 9 ~gk~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~~~~ 44 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGR-----SHAVKLAEEGADIILFDICH 44 (287)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEECCS
T ss_pred CCCEEEEeCCCChHHH-----HHHHHHHHCCCeEEEEcccc
Confidence 4579999999999886 67888999999999999764
No 404
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=75.38 E-value=1.5 Score=38.26 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=19.1
Q ss_pred EEEEeCCCcchhhHHHHHHHHHH
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
++++.|..|+||||+...|+..+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 45566999999999999988765
No 405
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=75.34 E-value=0.64 Score=42.50 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=21.2
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHH
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
..++++.|--|+||||++..|+..+
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3577777999999999999988766
No 406
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=75.26 E-value=2.5 Score=43.09 Aligned_cols=32 Identities=41% Similarity=0.504 Sum_probs=24.4
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
++++.|..|+||||++..+|..+ +.+..-|++
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~l---~~~~~~i~~ 141 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKSL---GRKFVRISL 141 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHH---TCEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCeEEEEe
Confidence 56666999999999999999888 344444544
No 407
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=75.13 E-value=2.5 Score=38.33 Aligned_cols=35 Identities=17% Similarity=0.410 Sum_probs=29.8
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ .+|..|+++|.+|.+++-+.
T Consensus 7 ~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 41 (262)
T 1zem_A 7 GKVCLVTGAGGNIGL-----ATALRLAEEGTAIALLDMNR 41 (262)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 478999999999997 57778899999999998653
No 408
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.07 E-value=1.7 Score=42.65 Aligned_cols=33 Identities=30% Similarity=0.247 Sum_probs=24.7
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
+-++ +.|.+|+|||++|.++|..+ |...+-|++
T Consensus 183 rGvL-L~GPPGTGKTllAkAiA~e~---~~~f~~v~~ 215 (405)
T 4b4t_J 183 KGVI-LYGPPGTGKTLLARAVAHHT---DCKFIRVSG 215 (405)
T ss_dssp CCEE-EESCSSSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CceE-EeCCCCCCHHHHHHHHHHhh---CCCceEEEh
Confidence 4444 45999999999999998765 566666664
No 409
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}
Probab=75.01 E-value=2.6 Score=38.11 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=30.0
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
..++++|+++-||.|+ ++|..|+++|.+|.++|-+.
T Consensus 11 ~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 46 (263)
T 3ak4_A 11 SGRKAIVTGGSKGIGA-----AIARALDKAGATVAIADLDV 46 (263)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3578999999999997 56778889999999998654
No 410
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=74.94 E-value=1.9 Score=39.60 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=29.9
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++++|+++-||.|+ ++|..|+++|.+|.++|-+.
T Consensus 27 ~~k~~lVTGas~GIG~-----aia~~la~~G~~V~~~~r~~ 62 (272)
T 4dyv_A 27 GKKIAIVTGAGSGVGR-----AVAVALAGAGYGVALAGRRL 62 (272)
T ss_dssp -CCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 4588999999999997 56778889999999998754
No 411
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=74.89 E-value=2.5 Score=37.91 Aligned_cols=35 Identities=26% Similarity=0.547 Sum_probs=29.4
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+|+++|+++-||.|+ ++|..|+++|.+|.++|-+.
T Consensus 2 ~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 36 (247)
T 3dii_A 2 NRGVIVTGGGHGIGK-----QICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp CCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 368999999999986 56788889999999998653
No 412
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=74.88 E-value=3.2 Score=38.02 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=30.1
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
..++++|+++-||.|+ .+|..|+++|.+|.+++-+.
T Consensus 21 ~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 56 (277)
T 2rhc_B 21 DSEVALVTGATSGIGL-----EIARRLGKEGLRVFVCARGE 56 (277)
T ss_dssp TSCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3578999999999997 46778889999999998653
No 413
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=74.88 E-value=2.7 Score=38.41 Aligned_cols=37 Identities=16% Similarity=0.473 Sum_probs=31.4
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+|+++|+++-+|.|+ .+|..|+++|.+|.+++-+..
T Consensus 5 ~~k~~lVTGas~GIG~-----aia~~la~~G~~V~~~~r~~~ 41 (274)
T 3e03_A 5 SGKTLFITGASRGIGL-----AIALRAARDGANVAIAAKSAV 41 (274)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCCS
T ss_pred CCcEEEEECCCChHHH-----HHHHHHHHCCCEEEEEeccch
Confidence 3579999999999887 567888999999999998754
No 414
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=74.86 E-value=1.8 Score=39.32 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=19.8
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHHHCCCCE
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPT 120 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA~~G~rV 120 (413)
++.++|+.|+||||+|.-|+.. .|.++
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~---~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSN---YSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH---SCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHh---cCCeE
Confidence 4555688999999999887643 46554
No 415
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=74.76 E-value=2.1 Score=39.51 Aligned_cols=37 Identities=22% Similarity=0.420 Sum_probs=30.6
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+++++|+++-||.|+ ++|..|+++|.+|++++-+..
T Consensus 11 ~~k~vlITGas~GIG~-----~~a~~L~~~G~~V~~~~r~~~ 47 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGF-----EICKQLSSNGIMVVLTCRDVT 47 (311)
T ss_dssp -CCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEESCHH
T ss_pred CCcEEEEecCCchHHH-----HHHHHHHHCCCEEEEEeCCHH
Confidence 3578999999999987 567788899999999997653
No 416
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=74.71 E-value=2.7 Score=37.83 Aligned_cols=36 Identities=14% Similarity=0.381 Sum_probs=30.2
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 18 ~~k~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~r~~ 53 (249)
T 1o5i_A 18 RDKGVLVLAASRGIGR-----AVADVLSQEGAEVTICARNE 53 (249)
T ss_dssp TTCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEcCCH
Confidence 4578999999999997 46778889999999998654
No 417
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=74.69 E-value=1.5 Score=48.87 Aligned_cols=40 Identities=20% Similarity=0.141 Sum_probs=28.2
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHH----CCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFAN----NGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~----~G~rVLlvD~D~ 127 (413)
...++.+.|-||+||||+|..++..... -...|..|+...
T Consensus 146 ~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 146 EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 3456666799999999999888766432 123577887654
No 418
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=74.64 E-value=3.3 Score=42.10 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=30.8
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
..++|.|++.+ ||||++.-++..|...|++|.++..
T Consensus 145 ~~~vI~VTGTn---GKTTT~~ml~~iL~~~G~~~g~~gs 180 (535)
T 2wtz_A 145 RLTVIGITGTS---GKTTTTYLVEAGLRAAGRVAGLIGT 180 (535)
T ss_dssp SSEEEEEESSS---CHHHHHHHHHHHHHHTTCCEEEESS
T ss_pred cceEEEeeCCC---ChHHHHHHHHHHHHHCCCCEEEECC
Confidence 34688888665 8999999999999999999988765
No 419
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=74.61 E-value=1.8 Score=41.33 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=21.5
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNG 117 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G 117 (413)
..+++-|-=|+||||.+..|+..|...|
T Consensus 5 ~fI~~EG~dGsGKTT~~~~La~~L~~~g 32 (331)
T 1e2k_A 5 LRVYIDGPHGMGKTTTTQLLVALGSRDD 32 (331)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC----CC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 5778889999999999999999998776
No 420
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=74.61 E-value=2.6 Score=38.44 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=29.8
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 20 ~~k~~lVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 55 (267)
T 1vl8_A 20 RGRVALVTGGSRGLGF-----GIAQGLAEAGCSVVVASRNL 55 (267)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3478999999999986 56778888999999998653
No 421
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*
Probab=74.60 E-value=2.6 Score=38.01 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=29.5
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 5 ~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 39 (254)
T 1hdc_A 5 GKTVIITGGARGLGA-----EAARQAVAAGARVVLADVLD 39 (254)
T ss_dssp CSEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 478999999999987 56778889999999998754
No 422
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=74.56 E-value=3 Score=37.83 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=30.0
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
..++++|+++-+|.|+ ++|..|+++|.+|.++|-+.
T Consensus 10 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 45 (264)
T 3ucx_A 10 TDKVVVISGVGPALGT-----TLARRCAEQGADLVLAARTV 45 (264)
T ss_dssp TTCEEEEESCCTTHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCcEEEEECCCcHHHH-----HHHHHHHHCcCEEEEEeCCH
Confidence 3479999999999886 56778889999999998653
No 423
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=74.52 E-value=2.1 Score=41.52 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=22.0
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNG 117 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G 117 (413)
..++++-|-=|+||||++..|+..|...|
T Consensus 49 ~~fIt~EG~dGsGKTT~~~~Lae~L~~~g 77 (376)
T 1of1_A 49 LLRVYIDGPHGMGKTTTTQLLVALGSRDD 77 (376)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHC----CC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 35778889999999999999999998776
No 424
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=74.47 E-value=1.7 Score=38.71 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=24.8
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.++.+-|..|+||||++..|+.. |.+|.+..-+
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred eEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 45666699999999999888765 5567776543
No 425
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Probab=74.38 E-value=3 Score=38.03 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=30.1
Q ss_pred CcEEEEEeCC--CcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYMLGGK--GGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~sgK--GGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+++++|+++- ||.|+ .+|..|+++|.+|.+++-+..
T Consensus 6 ~k~vlVTGas~~~gIG~-----~~a~~l~~~G~~V~~~~r~~~ 43 (275)
T 2pd4_A 6 GKKGLIVGVANNKSIAY-----GIAQSCFNQGATLAFTYLNES 43 (275)
T ss_dssp TCEEEEECCCSTTSHHH-----HHHHHHHTTTCEEEEEESSTT
T ss_pred CCEEEEECCCCCCcHHH-----HHHHHHHHCCCEEEEEeCCHH
Confidence 4789999988 89887 577888999999999987653
No 426
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}
Probab=74.35 E-value=2.7 Score=37.81 Aligned_cols=35 Identities=20% Similarity=0.426 Sum_probs=29.6
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 7 ~k~vlITGasggiG~-----~la~~l~~~G~~V~~~~r~~ 41 (264)
T 2pd6_A 7 SALALVTGAGSGIGR-----AVSVRLAGEGATVAACDLDR 41 (264)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSH
T ss_pred CCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEeCCh
Confidence 478999999999997 56778888999999998754
No 427
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.25 E-value=1.8 Score=42.95 Aligned_cols=34 Identities=26% Similarity=0.254 Sum_probs=25.5
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
.+-|++ .|.+|+|||++|.++|..+ |...+.+++
T Consensus 215 prGvLL-yGPPGTGKTllAkAiA~e~---~~~f~~v~~ 248 (434)
T 4b4t_M 215 PKGALM-YGPPGTGKTLLARACAAQT---NATFLKLAA 248 (434)
T ss_dssp CCEEEE-ESCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCeeEE-ECcCCCCHHHHHHHHHHHh---CCCEEEEeh
Confidence 344544 4999999999999998765 566777764
No 428
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=74.25 E-value=2.7 Score=38.49 Aligned_cols=36 Identities=19% Similarity=0.470 Sum_probs=30.5
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+|+++|+++-||.|+ ++|..|+++|.+|++++.+.
T Consensus 30 ~gk~~lVTGas~GIG~-----aia~~la~~G~~V~~~~~~~ 65 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGA-----AIAKRLALEGAAVALTYVNA 65 (271)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCC
Confidence 4589999999999887 67888999999999998653
No 429
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.25 E-value=1.5 Score=41.46 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.0
Q ss_pred EEEeCCCcchhhHHHHHHHHHHH
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFA 114 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA 114 (413)
+++.|..|+||||++..+|..+-
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 56679999999999999999764
No 430
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=74.21 E-value=2.8 Score=37.60 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=29.5
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 7 ~k~~lVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 41 (247)
T 2jah_A 7 GKVALITGASSGIGE-----ATARALAAEGAAVAIAARRV 41 (247)
T ss_dssp TCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 478999999999997 46778889999999998653
No 431
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=74.14 E-value=2.7 Score=38.30 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=30.5
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 19 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 54 (266)
T 4egf_A 19 DGKRALITGATKGIGA-----DIARAFAAAGARLVLSGRDV 54 (266)
T ss_dssp TTCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 5689999999999887 56778889999999998754
No 432
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=74.14 E-value=2.8 Score=38.27 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=29.7
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 21 ~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 55 (273)
T 1ae1_A 21 GTTALVTGGSKGIGY-----AIVEELAGLGARVYTCSRNE 55 (273)
T ss_dssp TCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCcchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 478999999999997 56778889999999998654
No 433
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=74.12 E-value=2.8 Score=38.05 Aligned_cols=35 Identities=23% Similarity=0.487 Sum_probs=29.5
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 16 ~k~vlITGasggiG~-----~~a~~l~~~G~~V~~~~r~~ 50 (278)
T 2bgk_A 16 DKVAIITGGAGGIGE-----TTAKLFVRYGAKVVIADIAD 50 (278)
T ss_dssp TCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEcCCh
Confidence 478999999999997 57778889999999997653
No 434
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=74.12 E-value=2.8 Score=37.88 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=29.4
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 7 ~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 41 (263)
T 3ai3_A 7 GKVAVITGSSSGIGL-----AIAEGFAKEGAHIVLVARQV 41 (263)
T ss_dssp TCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCchHHH-----HHHHHHHHCCCEEEEEcCCH
Confidence 478999999999997 56778888999999998653
No 435
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=74.11 E-value=2.8 Score=38.53 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=30.8
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+|+++|+++-+|.|+ ++|..|+++|.+|+++|-+.
T Consensus 10 ~~k~~lVTGas~gIG~-----aia~~la~~G~~V~~~~~~~ 45 (286)
T 3uve_A 10 EGKVAFVTGAARGQGR-----SHAVRLAQEGADIIAVDICK 45 (286)
T ss_dssp TTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEECCS
T ss_pred CCCEEEEeCCCchHHH-----HHHHHHHHCCCeEEEEeccc
Confidence 4589999999999886 67788999999999999764
No 436
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=74.06 E-value=1.6 Score=36.99 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=20.5
Q ss_pred EEEEeCCCcchhhHHHHHHHHHHH
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKFA 114 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~lA 114 (413)
+.++.|..|+||||+.-++...+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 666779999999999999888764
No 437
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}
Probab=74.01 E-value=3.2 Score=37.54 Aligned_cols=36 Identities=25% Similarity=0.480 Sum_probs=30.4
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+++++|+++-||.|+ ++|..|+++|.+|.+++-++.
T Consensus 21 ~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~ 56 (253)
T 2nm0_A 21 SRSVLVTGGNRGIGL-----AIARAFADAGDKVAITYRSGE 56 (253)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSSC
T ss_pred CCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCChH
Confidence 478999999999997 467788899999999987653
No 438
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=74.00 E-value=2.3 Score=39.03 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=24.8
Q ss_pred EEeCCCcchhhHHHHHHHHHHHHCCC-CEEEEe
Q 015096 93 MLGGKGGVGKTSCAASLAVKFANNGH-PTLVVS 124 (413)
Q Consensus 93 v~sgKGGvGKTTvAa~LA~~lA~~G~-rVLlvD 124 (413)
++.+.-|.|||.++..++..+...|. +|+++-
T Consensus 132 ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~ 164 (282)
T 1rif_A 132 ILNLPTSAGRSLIQALLARYYLENYEGKILIIV 164 (282)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHHCSSEEEEEC
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEE
Confidence 44789999999999888887665554 777773
No 439
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=73.94 E-value=2.8 Score=38.56 Aligned_cols=37 Identities=22% Similarity=0.505 Sum_probs=31.5
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+++++|+++-+|.|+ ++|..|+++|.+|++++-+..
T Consensus 8 ~~k~vlVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~~ 44 (285)
T 3sc4_A 8 RGKTMFISGGSRGIGL-----AIAKRVAADGANVALVAKSAE 44 (285)
T ss_dssp TTCEEEEESCSSHHHH-----HHHHHHHTTTCEEEEEESCCS
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECChh
Confidence 3579999999999887 577889999999999998764
No 440
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=73.81 E-value=2.4 Score=38.77 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=29.7
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ ++|..|+++|.+|++++-+.
T Consensus 4 ~k~~lVTGas~GIG~-----aia~~la~~G~~V~~~~r~~ 38 (264)
T 3tfo_A 4 DKVILITGASGGIGE-----GIARELGVAGAKILLGARRQ 38 (264)
T ss_dssp TCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESSH
T ss_pred CCEEEEeCCccHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 478999999999996 56778889999999998654
No 441
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=73.81 E-value=2.1 Score=40.64 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=22.0
Q ss_pred EEEEEeCCCcchhhHHHHHHHHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAASLAVKFAN 115 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~LA~~lA~ 115 (413)
...++.|..|+|||++|..+|..+-.
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhC
Confidence 35666799999999999999998863
No 442
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=73.80 E-value=3.4 Score=39.08 Aligned_cols=33 Identities=24% Similarity=0.191 Sum_probs=27.5
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEE
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLV 122 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLl 122 (413)
..++|.|++.. ||||++.-++..|...|+++.+
T Consensus 107 ~~~~IaVTGTn---GKTTTt~ll~~iL~~~g~~~~~ 139 (326)
T 3eag_A 107 HHWVLGVAGTH---GKTTTASMLAWVLEYAGLAPGF 139 (326)
T ss_dssp GSEEEEEESSS---CHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCCEEEEECCC---CHHHHHHHHHHHHHHcCCCceE
Confidence 45788888654 8999999999999999998743
No 443
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=73.78 E-value=3.1 Score=37.39 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=30.4
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.++++|+++-||.|+ ++|..|+++|.+|.+++-+..
T Consensus 12 ~k~vlVTGasggiG~-----~~a~~l~~~G~~V~~~~r~~~ 47 (265)
T 2o23_A 12 GLVAVITGGASGLGL-----ATAERLVGQGASAVLLDLPNS 47 (265)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEECTTS
T ss_pred CCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEeCCcH
Confidence 478999999999887 567788889999999987654
No 444
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2
Probab=73.77 E-value=2.8 Score=38.26 Aligned_cols=35 Identities=23% Similarity=0.500 Sum_probs=29.6
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ ++|..|+++|.+|.++|-+.
T Consensus 9 ~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 43 (270)
T 1yde_A 9 GKVVVVTGGGRGIGA-----GIVRAFVNSGARVVICDKDE 43 (270)
T ss_dssp TCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 478999999999997 56778889999999998654
No 445
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}
Probab=73.76 E-value=2.4 Score=38.35 Aligned_cols=35 Identities=14% Similarity=0.400 Sum_probs=29.5
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 5 ~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 39 (260)
T 2qq5_A 5 GQVCVVTGASRGIGR-----GIALQLCKAGATVYITGRHL 39 (260)
T ss_dssp TCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEeCCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 478999999999997 56778889999999998653
No 446
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=73.71 E-value=2.8 Score=38.03 Aligned_cols=35 Identities=29% Similarity=0.533 Sum_probs=29.6
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ .+|..|+++|.+|.+++-+.
T Consensus 13 ~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 47 (267)
T 1iy8_A 13 DRVVLITGGGSGLGR-----ATAVRLAAEGAKLSLVDVSS 47 (267)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 478999999999997 56778889999999998654
No 447
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=73.71 E-value=2.3 Score=38.21 Aligned_cols=30 Identities=30% Similarity=0.309 Sum_probs=22.1
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEe
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD 124 (413)
.++.+.-|.|||.++..++..+ +.+++++-
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~ 140 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL---STPTLIVV 140 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS---CSCEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHc---CCCEEEEe
Confidence 4455688999999988777654 66777664
No 448
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}
Probab=73.66 E-value=2.8 Score=37.83 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=29.5
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 7 ~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 41 (260)
T 2z1n_A 7 GKLAVVTAGSSGLGF-----ASALELARNGARLLLFSRNR 41 (260)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 478999999999996 56778888999999998654
No 449
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=73.63 E-value=2.8 Score=39.50 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=20.9
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHH
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
.+.+++++ |..|+||||+...|+..+
T Consensus 125 ~Ge~vaIv-GpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFI-GPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEE-CSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEE-CCCCCcHHHHHHHHhhhc
Confidence 34455554 899999999999999888
No 450
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=73.62 E-value=2.2 Score=36.26 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=26.4
Q ss_pred ceEEEEEcCCcccHHHHHHHHHHHHhCCCCCCeEEEecccC
Q 015096 314 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354 (413)
Q Consensus 314 t~~vlVt~p~~~~~~~~~r~~~~l~~~g~~~~gvVvN~v~p 354 (413)
+.+++|.......-.....+++.+...+.++ -+|+|+..-
T Consensus 107 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~Dl 146 (195)
T 1svi_A 107 KAVVQIVDLRHAPSNDDVQMYEFLKYYGIPV-IVIATKADK 146 (195)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHHHTTCCE-EEEEECGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEECccc
Confidence 4677777765433333345677787778776 589999754
No 451
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=73.54 E-value=2.3 Score=32.81 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=26.3
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCC-CCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNG-HPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G-~rVLlvD~D~ 127 (413)
+++|+|+++ |+.|+. ++..|.+.| ++|.++|-++
T Consensus 5 ~~~v~I~G~-G~iG~~-----~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQM-----IAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp CEEEEEECC-SHHHHH-----HHHHHHHCSSEEEEEEESCH
T ss_pred cCeEEEECC-CHHHHH-----HHHHHHhCCCceEEEEeCCH
Confidence 467888888 988864 566677889 8999998754
No 452
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=73.47 E-value=2.3 Score=38.07 Aligned_cols=36 Identities=17% Similarity=0.400 Sum_probs=30.1
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
..++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 13 ~~k~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~r~~ 48 (249)
T 3f9i_A 13 TGKTSLITGASSGIGS-----AIARLLHKLGSKVIISGSNE 48 (249)
T ss_dssp TTCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEcCCH
Confidence 4589999999999886 56778889999999998653
No 453
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=73.38 E-value=2.9 Score=37.88 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=29.6
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 7 ~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 41 (260)
T 1nff_A 7 GKVALVSGGARGMGA-----SHVRAMVAEGAKVVFGDILD 41 (260)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 478999999999997 46778889999999998654
No 454
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*
Probab=73.37 E-value=2.5 Score=38.18 Aligned_cols=35 Identities=20% Similarity=0.388 Sum_probs=29.6
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 14 ~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 48 (260)
T 2zat_A 14 NKVALVTASTDGIGL-----AIARRLAQDGAHVVVSSRKQ 48 (260)
T ss_dssp TCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 478999999999997 47778889999999998653
No 455
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=73.31 E-value=2.4 Score=43.92 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=26.1
Q ss_pred EeCCCcchhhHHHHHHHHHHHHCC----CCEEEEecC
Q 015096 94 LGGKGGVGKTSCAASLAVKFANNG----HPTLVVSTD 126 (413)
Q Consensus 94 ~sgKGGvGKTTvAa~LA~~lA~~G----~rVLlvD~D 126 (413)
+.|-.|+||||+.+.-+..+.+.+ .++|++..-
T Consensus 27 V~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft 63 (647)
T 3lfu_A 27 VLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFT 63 (647)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESS
T ss_pred EEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEecc
Confidence 346689999999999888887753 589998753
No 456
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=73.16 E-value=3 Score=38.05 Aligned_cols=36 Identities=19% Similarity=0.364 Sum_probs=29.7
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
..++++|+++-||.|+ ++|..|+++|.+|.+++-++
T Consensus 31 ~~k~vlVTGasggIG~-----~la~~l~~~G~~V~~~~r~~ 66 (279)
T 1xg5_A 31 RDRLALVTGASGGIGA-----AVARALVQQGLKVVGCARTV 66 (279)
T ss_dssp TTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCchHHH-----HHHHHHHHCCCEEEEEECCh
Confidence 3578999999999997 56777888999999998653
No 457
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=73.13 E-value=3 Score=37.40 Aligned_cols=36 Identities=19% Similarity=0.367 Sum_probs=29.8
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
..++++|+++-||.|+ ++|..|+++|.+|.++|-+.
T Consensus 12 ~~k~vlItGasggiG~-----~la~~l~~~G~~V~~~~r~~ 47 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGL-----ACVTALAEAGARVIIADLDE 47 (260)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3478999999999886 57778888999999998653
No 458
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}
Probab=73.11 E-value=2.8 Score=38.45 Aligned_cols=36 Identities=22% Similarity=0.454 Sum_probs=29.7
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++++|+++-||.|+ .+|..|+++|.+|.++|-+.
T Consensus 28 ~~k~vlVTGas~gIG~-----aia~~L~~~G~~V~~~~r~~ 63 (276)
T 2b4q_A 28 AGRIALVTGGSRGIGQ-----MIAQGLLEAGARVFICARDA 63 (276)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEECSCH
T ss_pred CCCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4578999999999997 46778888999999987653
No 459
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=73.02 E-value=1.5 Score=38.94 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=12.9
Q ss_pred EEEEeCCCcchhhHHHHHHH-HHH
Q 015096 91 YYMLGGKGGVGKTSCAASLA-VKF 113 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA-~~l 113 (413)
++.+.|..|+||||++..|+ ..+
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 45556899999999999888 654
No 460
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2
Probab=72.95 E-value=2.9 Score=38.57 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=29.7
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 18 ~k~vlVTGasggIG~-----~la~~l~~~G~~V~~~~r~~ 52 (303)
T 1yxm_A 18 GQVAIVTGGATGIGK-----AIVKELLELGSNVVIASRKL 52 (303)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 478999999999886 67778889999999998754
No 461
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=72.92 E-value=2.1 Score=39.19 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=29.9
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
.+++++|+++-||.|+ ++|..|+++|.+|+++|-+
T Consensus 25 ~gk~~lVTGas~gIG~-----aia~~la~~G~~V~~~~r~ 59 (271)
T 4ibo_A 25 GGRTALVTGSSRGLGR-----AMAEGLAVAGARILINGTD 59 (271)
T ss_dssp TTCEEEETTCSSHHHH-----HHHHHHHHTTCEEEECCSC
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 5689999999999987 5778889999999998764
No 462
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Probab=72.87 E-value=3 Score=38.30 Aligned_cols=36 Identities=25% Similarity=0.493 Sum_probs=30.1
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+|+++|+++-+|.|+ ++|..|+++|.+|.++|-+.
T Consensus 4 ~gk~~lVTGas~GIG~-----aia~~la~~G~~V~~~~r~~ 39 (281)
T 3zv4_A 4 TGEVALITGGASGLGR-----ALVDRFVAEGARVAVLDKSA 39 (281)
T ss_dssp TTCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCcCEEEEEeCCH
Confidence 3578999999999886 57788899999999998653
No 463
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=72.79 E-value=2.7 Score=38.09 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=29.8
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++++|+++-||.|+ ++|..|+++|.+|++++-+.
T Consensus 28 ~~k~vlITGas~gIG~-----~la~~l~~~G~~V~~~~r~~ 63 (262)
T 3rkr_A 28 SGQVAVVTGASRGIGA-----AIARKLGSLGARVVLTARDV 63 (262)
T ss_dssp TTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 4578999999999886 46778889999999998654
No 464
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=72.78 E-value=1.6 Score=36.96 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=15.8
Q ss_pred EEEEEeCCCcchhhHHHHH
Q 015096 90 KYYMLGGKGGVGKTSCAAS 108 (413)
Q Consensus 90 ~i~v~sgKGGvGKTTvAa~ 108 (413)
.++.+-|..|+||||++..
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4556669999999999986
No 465
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=72.68 E-value=2.7 Score=37.13 Aligned_cols=35 Identities=17% Similarity=0.300 Sum_probs=29.1
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 5 ~k~vlVtGasggiG~-----~~a~~l~~~G~~V~~~~r~~ 39 (234)
T 2ehd_A 5 KGAVLITGASRGIGE-----ATARLLHAKGYRVGLMARDE 39 (234)
T ss_dssp CCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 468999999999986 56778888999999998653
No 466
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=72.68 E-value=2.4 Score=38.75 Aligned_cols=36 Identities=19% Similarity=0.410 Sum_probs=30.2
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++++|+++-||.|+ ++|..|+++|.+|++++-+.
T Consensus 27 ~~k~~lVTGas~GIG~-----aia~~la~~G~~V~~~~r~~ 62 (270)
T 3ftp_A 27 DKQVAIVTGASRGIGR-----AIALELARRGAMVIGTATTE 62 (270)
T ss_dssp TTCEEEETTCSSHHHH-----HHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3579999999999986 56778899999999998753
No 467
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2
Probab=72.66 E-value=3 Score=37.47 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=30.1
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.++++|+++-||.|+ ++|..|+++|.+|.+++-+..
T Consensus 14 ~k~vlITGasggiG~-----~~a~~l~~~G~~V~~~~r~~~ 49 (265)
T 1h5q_A 14 NKTIIVTGGNRGIGL-----AFTRAVAAAGANVAVIYRSAA 49 (265)
T ss_dssp TEEEEEETTTSHHHH-----HHHHHHHHTTEEEEEEESSCT
T ss_pred CCEEEEECCCchHHH-----HHHHHHHHCCCeEEEEeCcch
Confidence 478999999999986 677788899999999987543
No 468
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=72.63 E-value=2.9 Score=38.17 Aligned_cols=36 Identities=25% Similarity=0.438 Sum_probs=30.2
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++++|+++-+|.|+ ++|..|+++|.+|+++|-+.
T Consensus 10 ~~k~~lVTGas~GIG~-----a~a~~la~~G~~V~~~~r~~ 45 (277)
T 3tsc_A 10 EGRVAFITGAARGQGR-----AHAVRMAAEGADIIAVDIAG 45 (277)
T ss_dssp TTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEECCS
T ss_pred CCCEEEEECCccHHHH-----HHHHHHHHcCCEEEEEeccc
Confidence 3579999999999996 46778889999999998753
No 469
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Probab=72.56 E-value=2.7 Score=37.84 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=29.9
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+++++|+++-||.|+ ++|..|+++|.+|.+++-+..
T Consensus 4 ~k~vlVTGas~giG~-----~ia~~l~~~G~~V~~~~r~~~ 39 (255)
T 2q2v_A 4 GKTALVTGSTSGIGL-----GIAQVLARAGANIVLNGFGDP 39 (255)
T ss_dssp TCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEECSSCC
T ss_pred CCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCch
Confidence 478999999999987 577788899999999886543
No 470
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Probab=72.54 E-value=2.4 Score=38.36 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=29.2
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 4 ~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 38 (260)
T 1x1t_A 4 GKVAVVTGSTSGIGL-----GIATALAAQGADIVLNGFGD 38 (260)
T ss_dssp TCEEEETTCSSHHHH-----HHHHHHHHTTCEEEEECCSC
T ss_pred CCEEEEeCCCcHHHH-----HHHHHHHHcCCEEEEEeCCc
Confidence 478999999999886 56778889999999988654
No 471
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=72.53 E-value=3.3 Score=36.71 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=29.1
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ ++|..|+++|.+|.++|-+.
T Consensus 7 ~~~vlVTGasggiG~-----~~a~~l~~~G~~V~~~~r~~ 41 (244)
T 1cyd_A 7 GLRALVTGAGKGIGR-----DTVKALHASGAKVVAVTRTN 41 (244)
T ss_dssp TCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEeCCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 478999999999987 46778888999999998653
No 472
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=72.47 E-value=2.9 Score=38.30 Aligned_cols=36 Identities=25% Similarity=0.482 Sum_probs=30.0
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++++|+++-||.|+ ++|..|+++|.+|+++|-+.
T Consensus 26 ~~k~~lVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~ 61 (277)
T 4fc7_A 26 RDKVAFITGGGSGIGF-----RIAEIFMRHGCHTVIASRSL 61 (277)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHTTTCEEEEEESCH
T ss_pred CCCEEEEeCCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3579999999999887 56778889999999998653
No 473
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=72.47 E-value=2.5 Score=38.66 Aligned_cols=37 Identities=14% Similarity=0.351 Sum_probs=30.7
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+++++|+++-||.|+ ++|..|+++|.+|.+++-+..
T Consensus 4 ~~k~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~r~~~ 40 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGR-----AIAEAAVAAGDTVIGTARRTE 40 (281)
T ss_dssp CCCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEESSGG
T ss_pred CCcEEEEECCCChHHH-----HHHHHHHHCCCEEEEEeCCHH
Confidence 3578999999999997 577788899999999987643
No 474
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=72.46 E-value=2.7 Score=37.11 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=29.6
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
+++++|+++-||.|+ ++|..|+++|.+|.+++-+..
T Consensus 2 ~k~vlVtGasggiG~-----~la~~l~~~G~~V~~~~r~~~ 37 (242)
T 1uay_A 2 ERSALVTGGASGLGR-----AAALALKARGYRVVVLDLRRE 37 (242)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHHHTCEEEEEESSCC
T ss_pred CCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEccCcc
Confidence 368999999999986 567778888999999987654
No 475
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=72.38 E-value=3.1 Score=37.05 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=29.0
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 2 ~k~vlItGasggiG~-----~~a~~l~~~G~~V~~~~r~~ 36 (250)
T 2cfc_A 2 SRVAIVTGASSGNGL-----AIATRFLARGDRVAALDLSA 36 (250)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEeCCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 368999999999887 56778888999999998653
No 476
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=72.36 E-value=2.5 Score=38.51 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=28.6
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
.+++++|+++-||.|+ ++|..|+++|.+|.+++.
T Consensus 25 ~~k~vlITGas~gIG~-----a~a~~l~~~G~~V~~~~~ 58 (272)
T 4e3z_A 25 DTPVVLVTGGSRGIGA-----AVCRLAARQGWRVGVNYA 58 (272)
T ss_dssp CSCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEECCCchHHH-----HHHHHHHHCCCEEEEEcC
Confidence 4578999999999997 677889999999988754
No 477
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.35 E-value=2.1 Score=42.82 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=25.1
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
.+-|+ +.|.+|+|||++|.++|..+ |...+.|++
T Consensus 243 prGIL-LyGPPGTGKTlLAkAiA~e~---~~~fi~vs~ 276 (467)
T 4b4t_H 243 PKGIL-LYGPPGTGKTLCARAVANRT---DATFIRVIG 276 (467)
T ss_dssp CSEEE-ECSCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCceE-eeCCCCCcHHHHHHHHHhcc---CCCeEEEEh
Confidence 34444 55999999999999998765 556666664
No 478
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2
Probab=72.27 E-value=3.2 Score=37.61 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=29.4
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 7 ~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 41 (267)
T 2gdz_A 7 GKVALVTGAAQGIGR-----AFAEALLLKGAKVALVDWNL 41 (267)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCCcHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 478999999999997 46778889999999998654
No 479
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=72.25 E-value=3.2 Score=37.82 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=29.7
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ ++|..|+++|.+|.++|-+.
T Consensus 31 ~k~vlITGasggIG~-----~la~~L~~~G~~V~~~~r~~ 65 (272)
T 1yb1_A 31 GEIVLITGAGHGIGR-----LTAYEFAKLKSKLVLWDINK 65 (272)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCchHHH-----HHHHHHHHCCCEEEEEEcCH
Confidence 478999999999887 57778889999999998654
No 480
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=72.24 E-value=2.2 Score=43.05 Aligned_cols=31 Identities=29% Similarity=0.352 Sum_probs=24.2
Q ss_pred EEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEec
Q 015096 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (413)
Q Consensus 92 ~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~ 125 (413)
+++.|..|+|||++|..+|..+ |.+++.+++
T Consensus 241 vLL~GppGtGKT~lAraia~~~---~~~fv~vn~ 271 (489)
T 3hu3_A 241 ILLYGPPGTGKTLIARAVANET---GAFFFLING 271 (489)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC---SSEEEEEEH
T ss_pred EEEECcCCCCHHHHHHHHHHHh---CCCEEEEEc
Confidence 4555999999999999987654 677777775
No 481
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=72.23 E-value=3 Score=40.80 Aligned_cols=31 Identities=19% Similarity=0.180 Sum_probs=24.5
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGH 118 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~ 118 (413)
.+.++.++ |..|+||||++..+|..+++.+.
T Consensus 173 rGQr~~Iv-G~sG~GKTtLl~~Iar~i~~~~~ 203 (422)
T 3ice_A 173 RGQRGLIV-APPKAGKTMLLQNIAQSIAYNHP 203 (422)
T ss_dssp TTCEEEEE-CCSSSSHHHHHHHHHHHHHHHCT
T ss_pred CCcEEEEe-cCCCCChhHHHHHHHHHHhhcCC
Confidence 45677777 55699999999999998887543
No 482
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=72.23 E-value=4 Score=37.54 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=30.8
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+++++|+++-||.|+ ++|..|+++|.+|.+++-+..
T Consensus 15 ~gk~vlVTGas~gIG~-----~~a~~L~~~G~~V~~~~r~~~ 51 (291)
T 3rd5_A 15 AQRTVVITGANSGLGA-----VTARELARRGATVIMAVRDTR 51 (291)
T ss_dssp TTCEEEEECCSSHHHH-----HHHHHHHHTTCEEEEEESCHH
T ss_pred CCCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEECCHH
Confidence 4589999999999885 567788899999999987643
No 483
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=72.07 E-value=3 Score=37.21 Aligned_cols=36 Identities=25% Similarity=0.503 Sum_probs=29.8
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
..++++|+++-||.|+ ++|..|+++|.+|.++|-+.
T Consensus 10 ~~~~vlVtGasggiG~-----~la~~l~~~G~~V~~~~r~~ 45 (255)
T 1fmc_A 10 DGKCAIITGAGAGIGK-----EIAITFATAGASVVVSDINA 45 (255)
T ss_dssp TTCEEEETTTTSHHHH-----HHHHHHHTTTCEEEEEESCH
T ss_pred CCCEEEEECCccHHHH-----HHHHHHHHCCCEEEEEcCCH
Confidence 3478999999999997 56778889999999998653
No 484
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=71.91 E-value=3.3 Score=37.82 Aligned_cols=37 Identities=24% Similarity=0.392 Sum_probs=31.2
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+++++|+++-||.|+ ++|..|+++|.+|+++|-+..
T Consensus 9 ~~k~~lVTGas~gIG~-----a~a~~l~~~G~~V~~~~r~~~ 45 (281)
T 3s55_A 9 EGKTALITGGARGMGR-----SHAVALAEAGADIAICDRCEN 45 (281)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEECCSC
T ss_pred CCCEEEEeCCCchHHH-----HHHHHHHHCCCeEEEEeCCcc
Confidence 4579999999999886 567888999999999997654
No 485
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*
Probab=71.87 E-value=3 Score=37.20 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=29.2
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D 126 (413)
+++++|+++-||.|+ ++|..|+++|.+|.+++-+
T Consensus 7 ~k~vlVTGasggiG~-----~~a~~l~~~G~~V~~~~r~ 40 (258)
T 3afn_B 7 GKRVLITGSSQGIGL-----ATARLFARAGAKVGLHGRK 40 (258)
T ss_dssp TCEEEETTCSSHHHH-----HHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEECCC
Confidence 478999999999987 5677888899999999976
No 486
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=71.87 E-value=2.7 Score=37.87 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=19.7
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHH
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
+++.++ |.+|+||||.|..||..+
T Consensus 9 ~~~~~~-G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILL-GAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEE-CCTTSCHHHHHHHHHHHH
T ss_pred cceeeE-CCCCCCHHHHHHHHHHHh
Confidence 455655 889999999999999876
No 487
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=71.81 E-value=3.2 Score=38.55 Aligned_cols=37 Identities=27% Similarity=0.475 Sum_probs=30.9
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+++++|+++-||.|+ ++|..|+++|.+|.++|-+..
T Consensus 30 ~gk~vlVTGas~gIG~-----~la~~l~~~G~~V~~~~r~~~ 66 (301)
T 3tjr_A 30 DGRAAVVTGGASGIGL-----ATATEFARRGARLVLSDVDQP 66 (301)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCHH
T ss_pred CCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEECCHH
Confidence 4579999999999887 577788899999999987643
No 488
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*
Probab=71.80 E-value=3.2 Score=38.20 Aligned_cols=35 Identities=20% Similarity=0.441 Sum_probs=29.6
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ ++|..|+++|.+|.+++-+.
T Consensus 26 ~k~vlITGasggiG~-----~la~~L~~~G~~V~~~~r~~ 60 (302)
T 1w6u_A 26 GKVAFITGGGTGLGK-----GMTTLLSSLGAQCVIASRKM 60 (302)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 478999999999886 67778889999999998754
No 489
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=71.74 E-value=2.8 Score=39.29 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=31.3
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+++++|+++-||.|+ ++|..|+++|.+|+++|.+..
T Consensus 45 ~gk~~lVTGas~GIG~-----aia~~la~~G~~Vv~~~~~~~ 81 (317)
T 3oec_A 45 QGKVAFITGAARGQGR-----THAVRLAQDGADIVAIDLCRQ 81 (317)
T ss_dssp TTCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEECCCC
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCeEEEEecccc
Confidence 4589999999999986 567788999999999997644
No 490
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=71.70 E-value=5.8 Score=37.16 Aligned_cols=38 Identities=8% Similarity=0.076 Sum_probs=26.8
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHH---CCCCEEEEecC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFAN---NGHPTLVVSTD 126 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~---~G~rVLlvD~D 126 (413)
.-..++.|..|+||||+|..+|..+.. ....++.++++
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~ 58 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE 58 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC
Confidence 446777899999999999999875421 12356666543
No 491
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=71.66 E-value=2.2 Score=37.18 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=19.2
Q ss_pred EEEEeCCCcchhhHHHHHHHHHH
Q 015096 91 YYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 91 i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
++.+.|..|+||||+.-.|+..+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 55555999999999999998766
No 492
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Probab=71.58 E-value=2.8 Score=38.47 Aligned_cols=36 Identities=17% Similarity=0.402 Sum_probs=30.0
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++++|+++-||.|+ ++|..|+++|.+|.+++.+.
T Consensus 28 ~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 63 (283)
T 1g0o_A 28 EGKVALVTGAGRGIGR-----EMAMELGRRGCKVIVNYANS 63 (283)
T ss_dssp TTCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCc
Confidence 3578999999999987 56778888999999998764
No 493
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=71.57 E-value=3.4 Score=37.49 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=30.0
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.+++++|+++-+|.|+ .+|..|+++|.+|.++|-+.
T Consensus 7 ~~k~~lVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~ 42 (265)
T 3lf2_A 7 SEAVAVVTGGSSGIGL-----ATVELLLEAGAAVAFCARDG 42 (265)
T ss_dssp TTCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3579999999999886 56778889999999998653
No 494
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=71.49 E-value=3.3 Score=37.28 Aligned_cols=34 Identities=18% Similarity=0.475 Sum_probs=28.9
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
++++|+++-||.|+ .+|..|+++|.+|.+++-+.
T Consensus 3 k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 36 (256)
T 1geg_A 3 KVALVTGAGQGIGK-----AIALRLVKDGFAVAIADYND 36 (256)
T ss_dssp CEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEECCCChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 68999999999997 57778899999999998653
No 495
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=71.43 E-value=2.6 Score=41.01 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=20.7
Q ss_pred cEEEEEeCCCcchhhHHHHHHHHHH
Q 015096 89 RKYYMLGGKGGVGKTSCAASLAVKF 113 (413)
Q Consensus 89 ~~i~v~sgKGGvGKTTvAa~LA~~l 113 (413)
..++.+.|..|+||||++..|+..+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4466667999999999999999754
No 496
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=71.41 E-value=2 Score=38.22 Aligned_cols=33 Identities=33% Similarity=0.336 Sum_probs=23.9
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+.-|.++ |.-|+||||++.-|+. .|. -++|+|-
T Consensus 9 ~~~iglT-GgigsGKStv~~~l~~----~g~--~vidaD~ 41 (210)
T 4i1u_A 9 MYAIGLT-GGIGSGKTTVADLFAA----RGA--SLVDTDL 41 (210)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHH----TTC--EEEEHHH
T ss_pred eeEEEEE-CCCCCCHHHHHHHHHH----CCC--cEEECcH
Confidence 4556666 6668999999987764 465 5678884
No 497
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=71.38 E-value=2.9 Score=37.64 Aligned_cols=36 Identities=14% Similarity=0.270 Sum_probs=29.8
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHH-CCCCEEEEecCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDP 127 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~-~G~rVLlvD~D~ 127 (413)
.+++++|+++-||.|+ ++|..|++ .|.+|++++-++
T Consensus 3 ~~k~vlITGasggIG~-----~~a~~L~~~~g~~V~~~~r~~ 39 (276)
T 1wma_A 3 GIHVALVTGGNKGIGL-----AIVRDLCRLFSGDVVLTARDV 39 (276)
T ss_dssp CCCEEEESSCSSHHHH-----HHHHHHHHHSSSEEEEEESSH
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHhcCCeEEEEeCCh
Confidence 3578999999999887 46777888 899999998764
No 498
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Probab=71.34 E-value=3.7 Score=37.15 Aligned_cols=35 Identities=9% Similarity=0.122 Sum_probs=29.4
Q ss_pred CcEEEEEeCC--CcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGK--GGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgK--GGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
.++++|+++- ||.|+ ++|..|+++|.+|.+++-+.
T Consensus 9 ~k~vlVTGas~~~gIG~-----~ia~~l~~~G~~V~~~~r~~ 45 (265)
T 1qsg_A 9 GKRILVTGVASKLSIAY-----GIAQAMHREGAELAFTYQND 45 (265)
T ss_dssp TCEEEECCCCSTTSHHH-----HHHHHHHHTTCEEEEEESST
T ss_pred CCEEEEECCCCCCCHHH-----HHHHHHHHCCCEEEEEcCcH
Confidence 4789999887 89886 57788899999999998765
No 499
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=71.28 E-value=3.3 Score=38.00 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=29.1
Q ss_pred CcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCC
Q 015096 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (413)
Q Consensus 88 ~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~ 127 (413)
+++++|+++-||.|+ ++|..|+++|.+|++++-+.
T Consensus 24 ~k~~lVTGas~GIG~-----aia~~la~~G~~V~~~~r~~ 58 (279)
T 3sju_A 24 PQTAFVTGVSSGIGL-----AVARTLAARGIAVYGCARDA 58 (279)
T ss_dssp -CEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 478999999999886 56778889999999998653
No 500
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=71.12 E-value=3.3 Score=36.60 Aligned_cols=37 Identities=19% Similarity=0.414 Sum_probs=29.7
Q ss_pred CCcEEEEEeCCCcchhhHHHHHHHHHHHHCCCCEEEEecCCC
Q 015096 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (413)
Q Consensus 87 ~~~~i~v~sgKGGvGKTTvAa~LA~~lA~~G~rVLlvD~D~~ 128 (413)
.+++|+|+++-||.|+ +++..|+++|++|.+++-++.
T Consensus 20 ~~~~ilVtGatG~iG~-----~l~~~L~~~G~~V~~~~R~~~ 56 (236)
T 3e8x_A 20 QGMRVLVVGANGKVAR-----YLLSELKNKGHEPVAMVRNEE 56 (236)
T ss_dssp -CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSGG
T ss_pred CCCeEEEECCCChHHH-----HHHHHHHhCCCeEEEEECChH
Confidence 3478999999999997 556677889999999997654
Done!