RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015097
(413 letters)
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; 3.01A {Schizosaccharomyces pombe}
Length = 329
Score = 310 bits (795), Expect = e-104
Identities = 98/342 (28%), Positives = 171/342 (50%), Gaps = 24/342 (7%)
Query: 72 APSEAVSGFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSL 131
+ + ++ T K+ +GGKGGVGKT+ + SLA++ + L++STDPAH+L
Sbjct: 2 SFDPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNL 61
Query: 132 SDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGM 191
SD+F G V G D L A+EI+P + +E L
Sbjct: 62 SDAFGTKF-GKDARKVPGFD-NLSAMEIDPNLSIQEMTE--------QADQQNPNNPLSG 111
Query: 192 LVEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHTLRLLS 251
+++ L PG+DEA+A +++++ ++S E+ ++FDTAPTGHTLR L+
Sbjct: 112 MMQDLA---------FTIPGIDEALAFAEILKQIKSMEFD---CVIFDTAPTGHTLRFLN 159
Query: 252 LPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDT 311
P L+ ++GK+ L + + + S+ G N Q K+E +R + +V + F++
Sbjct: 160 FPTVLEKALGKLGGLSSRFGPMINQMGSIMGVNANEQDLFGKMESMRANISEVNKQFKNP 219
Query: 312 DSTEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQM 371
D T FV V I +++ E+ R+ + L + ++VNQ++ + C C +RK Q
Sbjct: 220 DLTTFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKMQQ 279
Query: 372 RALEMIKSDSELSSLMLIEAPLVDVEIRGVPALRFMGDIIWK 413
+ L I + +++ P V E+RG AL+ +++ K
Sbjct: 280 KYLAQI--EELYEDFHVVKVPQVPAEVRGTEALKSFSEMLVK 319
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 294 bits (755), Expect = 5e-98
Identities = 117/330 (35%), Positives = 190/330 (57%), Gaps = 25/330 (7%)
Query: 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVP 146
+ + +GGKGGVGKT+ +A+ A+ A +G TLV+STDPAHSLSDS +++ G
Sbjct: 12 GKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPAHSLSDSLEREI-GHTPTK 70
Query: 147 VEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLD 206
+ L+A+EI+PE A EE++ Q+ GMGL ML +Q+
Sbjct: 71 ITE---NLYAVEIDPEVAMEEYQAKLQEQAA-----MNPGMGLDMLQDQMDMA------- 115
Query: 207 TPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKILKL 266
+ PG+DEA A + ++++ + EY ++FDTAPTGHTLRLLS P+ +D+ +GK++K+
Sbjct: 116 SMSPGIDEAAAFDQFLRYMTTDEYD---IVIFDTAPTGHTLRLLSFPEIMDSWVGKMIKI 172
Query: 267 REKIASATSAIKSVF---GQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPT 323
R +I S A K++ G E+ A +E ++++ RE+ D + T F +V IP
Sbjct: 173 RRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPE 232
Query: 324 VMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSEL 383
M++ ES R ++L+K ++ +IVNQ++P SDC+FC +RK Q L+ I +
Sbjct: 233 EMSIYESERAMKALEKYSIHADGVIVNQVLPE-ESDCEFCNARRKLQQERLKQI--REKF 289
Query: 384 SSLMLIEAPLVDVEIRGVPALRFMGDIIWK 413
S ++ E PL+ E +G+ L + + ++
Sbjct: 290 SDKVVAEVPLLKKEAKGIETLEKIAEQLYG 319
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae}
PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A*
3idq_A 3a36_A 3a37_A*
Length = 354
Score = 294 bits (754), Expect = 2e-97
Identities = 102/342 (29%), Positives = 165/342 (48%), Gaps = 22/342 (6%)
Query: 80 FDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFA--NNGHPTLVVSTDPAHSLSDSFAQ 137
++ T K+ +GGKGGVGKT+ + S+A++ A L++STDPAH+LSD+F +
Sbjct: 9 LHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGE 68
Query: 138 DLTGGQLVPVEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLG 197
G V G + L +EI+P A ++ ++ D G G + L
Sbjct: 69 KF-GKDARKVTGMN-NLSCMEIDPSAALKDMNDMAVSRANNNGSD-----GQGDDLGSLL 121
Query: 198 ELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSM---FTRIVFDTAPTGHTLRLLSLPD 254
+ L PG+DEA++ +V++ ++ QE F ++FDTAPTGHTLR L LP+
Sbjct: 122 QGGALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPN 181
Query: 255 FLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDST 314
L + K ++ K+ ++ + S KL L+ + +R+ F D D T
Sbjct: 182 TLSKLLEKFGEITNKLGPMLNSFMGAGNVD-----ISGKLNELKANVETIRQQFTDPDLT 236
Query: 315 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASD---CKFCAMKRKDQM 371
FV V I +++ E+ RL + L ++ V +IVNQ++ CK C + K Q
Sbjct: 237 TFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQK 296
Query: 372 RALEMIKSDSELSSLMLIEAPLVDVEIRGVPALRFMGDIIWK 413
+ L+ I D +++ PL EIRG+ L + K
Sbjct: 297 KYLDQI--DELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNK 336
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 287 bits (737), Expect = 3e-95
Identities = 104/337 (30%), Positives = 175/337 (51%), Gaps = 26/337 (7%)
Query: 81 DEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLT 140
++ ++ +GGKGGVGKT+ + SLA++ A L++STDPAH+LSD+F+Q
Sbjct: 8 QSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAFSQKF- 66
Query: 141 GGQLVPVEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELK 200
G + VEG D L+A+EI+P + ++ DG +G +
Sbjct: 67 GKEARLVEGFD-NLYAMEIDPNGSMQDLLAGQTGDGD----------------AGMGGVG 109
Query: 201 LGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHTLRLLSLPDFLDASI 260
+ + L PG+DEA++ ++V++ + S Y IVFDTAPTGHTLR L P L+ ++
Sbjct: 110 VMQDLAYAIPGIDEAMSFAEVLKQVNSLSYE---TIVFDTAPTGHTLRFLQFPTVLEKAL 166
Query: 261 GKILKLREKIASATSAIKSVFGQ---EQNRQGASDKLERLRERMVKVRELFRDTDSTEFV 317
K+ +L + S + I G Q +KL+ LR + +V F+D T FV
Sbjct: 167 AKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFV 226
Query: 318 IVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP-SASDCKFCAMKRKDQMRALEM 376
V IP +++ E+ R+ + L + ++VNQ++ P SDC+ C +R+ Q + L+
Sbjct: 227 CVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQ 286
Query: 377 IKSDSELSSLMLIEAPLVDVEIRGVPALRFMGDIIWK 413
I+ + +++ PL+ E+RG L +++ K
Sbjct: 287 IE-ELYDEEFNVVKMPLLVEEVRGKERLEKFSEMLIK 322
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein,
targeting factor, ATP-bindi TRC40, ARSA,
nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus
jannaschii} PDB: 3ug6_A*
Length = 349
Score = 287 bits (736), Expect = 8e-95
Identities = 110/338 (32%), Positives = 187/338 (55%), Gaps = 26/338 (7%)
Query: 81 DEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLT 140
++ KY M GGKGGVGKT+ +A+ V A G ++VSTDPAHSL D F Q+
Sbjct: 18 KKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEF- 76
Query: 141 GGQLVPVEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELK 200
G + V+G D L+ +EI+P+KA EE++ + LG ++E E
Sbjct: 77 GHEPTKVKGYD-NLYVVEIDPQKAMEEYK-------EKLKAQIEENPFLGEMLEDQLE-- 126
Query: 201 LGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHTLRLLSLPDFLDASI 260
+ PG DE+ A +++++S E+ ++FDTAPTGHTLR L +P+ +D +
Sbjct: 127 ----MAALSPGTDESAAFDVFLKYMDSNEFD---VVIFDTAPTGHTLRFLGMPEVMDKYM 179
Query: 261 GKILKLREKIASATSAIKSVFG-----QEQNRQGASDKLERLRERMVKVRELFRDTDSTE 315
K++KLR++++ +K + ++ + ++LE+++ER+V+ R + D + T
Sbjct: 180 TKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTA 239
Query: 316 FVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALE 375
F +V IP M++ ES R ++L+K +P+ +IVNQ+IP C FC +R+ Q++ LE
Sbjct: 240 FRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDV-QCDFCRARRELQLKRLE 298
Query: 376 MIKSDSELSSLMLIEAPLVDVEIRGVPALRFMGDIIWK 413
MI + ++ PL+ E +G+ L+ + I++
Sbjct: 299 MI--KEKFGDKVIAYVPLLRTEAKGIETLKQIAKILYG 334
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A
{Debaryomyces hansenii}
Length = 348
Score = 286 bits (734), Expect = 2e-94
Identities = 100/348 (28%), Positives = 165/348 (47%), Gaps = 37/348 (10%)
Query: 79 GFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKF--ANNGHPTLVVSTDPAHSLSDSFA 136
+ +V K+ +GGKGGVGKT+ ++S+AV+ A L++STDPAH+LSD+F
Sbjct: 8 TLESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSDAFC 67
Query: 137 QDLTGGQLVPVEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQL 196
Q G VEG L +EI+PE A + + + M
Sbjct: 68 QKF-GKDARKVEGLP-NLSCMEIDPEAAMSDLQQQASQYNNDPNDPLKSMM--------- 116
Query: 197 GELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSM---------FTRIVFDTAPTGHTL 247
+ PG+DEA++ +V++ +++Q+ + I+FDTAPTGHTL
Sbjct: 117 ------SDMTGSIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGHTL 170
Query: 248 RLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVREL 307
R L LP L+ + K L K+ S + Q+ +KL +++ + +V E
Sbjct: 171 RFLQLPSTLEKLLSKFKDLSGKLGPMLSMMGGGQQQD-----IFEKLNEVQKNVSEVNEQ 225
Query: 308 FRDTDSTEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASD--CKFCAM 365
F + + T F+ V I +++ E+ R+ + L N+ V ++VNQ++ D CK C
Sbjct: 226 FTNPELTTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCES 285
Query: 366 KRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRGVPALRFMGDIIWK 413
+ K Q + L+ + L++ PL+ EIRGV L+ + K
Sbjct: 286 RWKMQKKYLDQM--GELYEDYHLVKMPLLGCEIRGVENLKKFSKFLLK 331
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase,
ATP binding site, hydro; HET: ADP; 2.15A {Escherichia
coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A*
1ii9_A*
Length = 589
Score = 263 bits (674), Expect = 1e-82
Identities = 84/327 (25%), Positives = 133/327 (40%), Gaps = 37/327 (11%)
Query: 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVP 146
Y GKGGVGKTS + + A++ A G L+VSTDPA ++ F+Q + G +
Sbjct: 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTI-GNTIQA 64
Query: 147 VEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLD 206
+ L ALEI+P+ A +++R +K + + + EQL E+
Sbjct: 65 IASVP-GLSALEIDPQAAAQQYR----ARIVDPIKGVLPDDVVSSINEQLSGACTTEI-- 117
Query: 207 TPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKILKL 266
DE + L F I+FDTAPTGHT+RLL LP + I +
Sbjct: 118 ---AAFDEFTGLLTDASLLTR-----FDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNPEG 169
Query: 267 REKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMA 326
+ G LE+ RE+ E D T V+V
Sbjct: 170 ASCL------------------GPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKST 211
Query: 327 VSESSRLSESLKKENVPVKRLIVNQIIPPS-ASDCKFCAMKRKDQMRALEMIKSDSELSS 385
+ E +R L + + L++N ++P + A++ A + + AL + ++L+
Sbjct: 212 LQEVARTHLELAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQEALANL--PADLAG 269
Query: 386 LMLIEAPLVDVEIRGVPALRFMGDIIW 412
L L V + GV AL +
Sbjct: 270 LPTDTLFLQPVNMVGVSALSRLLSTQP 296
Score = 241 bits (616), Expect = 4e-74
Identities = 70/332 (21%), Positives = 121/332 (36%), Gaps = 64/332 (19%)
Query: 78 SGFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQ 137
S + +A + ML GKGGVGKT+ AA++AV+ A+ G + ++DPA LS +
Sbjct: 316 SALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLSMTLNG 375
Query: 138 DLTGGQLVPVEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLG 197
L L I+P + E +R + G +D G +L E
Sbjct: 376 SLNN------------LQVSRIDPHEETERYRQHVLETKG----KELDEAGKRLLEE--- 416
Query: 198 ELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHTLRLLSLPDFLD 257
D P +E + + +V DTAPTGHTL LL
Sbjct: 417 --------DLRSPCTEEIAVFQAFSRVIREAGKR---FVVMDTAPTGHTLLLLDATGAYH 465
Query: 258 ASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFV 317
I K + L +D + T+ +
Sbjct: 466 REIA-------------------------------KKMGEKGHFTTPMMLLQDPERTKVL 494
Query: 318 IVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMI 377
+VT+P V E++ L L++ + I+N + + + M+ + ++ +E +
Sbjct: 495 LVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESV 554
Query: 378 KSDSELSSLMLIEAPLVDVEIRGVPALRFMGD 409
K + + P++ E G+ L+ +
Sbjct: 555 K---RQHASRVALVPVLASEPTGIDKLKQLAG 583
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 209 bits (534), Expect = 2e-64
Identities = 50/284 (17%), Positives = 92/284 (32%), Gaps = 32/284 (11%)
Query: 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS-TDPAHSLSDSFAQDLTGGQLVPV 147
GK GV +T A + A A+ G L+ +P Q L +
Sbjct: 2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGLAEPVLP--LLLEQTL-TPDPQQI 58
Query: 148 EGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDT 207
L ++ E VK +++++ +L L
Sbjct: 59 APN---LEVVQFQSSVLLERNWE--------EVKKLEAQYLRTPIIKEVYGQELVVL--- 104
Query: 208 PPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKILKLR 267
PG+D A+A++ + ++ S +Y IV+D TLR+L LP+ L + + +L
Sbjct: 105 --PGMDSALALNAIREYDASGKYD---TIVYDGTGDAFTLRMLGLPESLSWYVRRFRQLF 159
Query: 268 EKIASATSA---------IKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVI 318
+ I S F + ++ + K +E D +
Sbjct: 160 VNSDLGKTIAESPLIQPLISSFFNVNWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFL 219
Query: 319 VTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKF 362
VT + V L S ++ + + +I +F
Sbjct: 220 VTTADPLEVVSVRYLWGSAQQIGLTIGGVIQVSSQTEGDLSAEF 263
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.4 bits (174), Expect = 2e-13
Identities = 62/408 (15%), Positives = 114/408 (27%), Gaps = 143/408 (35%)
Query: 90 KYYMLGGKGGVGKTSCAASLA---------------VKFANNGHPTLVVSTDPAHSLSDS 134
K ++ G G GKT A + + N P V+ + L
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL--EMLQKLLYQ 208
Query: 135 FAQDLTGGQLVPVEGPDFPLFALEINPEKAREEFRN-VTQKDGGTG------VKD--FMD 185
+ T D +++ + E R + K V++ +
Sbjct: 209 IDPNWT-------SRSDHS-SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 186 GMGLG--MLV--------EQLGELKLGEL-LDTPPPGLDEAIAISKVIQFLESQEYSMFT 234
L +L+ + L + LD L S ++++L+
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLP 319
Query: 235 RIVFDTAPTGHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKL 294
R V T P R LS+ I + +R+ +A+ + + DKL
Sbjct: 320 REVLTTNP-----RRLSI-------IAE--SIRDGLATW----------DNWKHVNCDKL 355
Query: 295 ERLRERMVKV------RELFRDTDSTEFVI----VTIPT-VMA--------------VSE 329
+ E + V R++F + IPT +++ V++
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDR-----LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 330 SSRLS-------------------ESLKKENVPVK-RLIVNQIIPPSASDCKFCAMKRKD 369
+ S +K EN R IV+ P D D
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 370 Q---------MRALEMIKSDSELSSLMLIEAPLVDVEIRGVPALRFMG 408
Q ++ +E + + + L D RF+
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFL------D--------FRFLE 504
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 8e-08
Identities = 82/486 (16%), Positives = 133/486 (27%), Gaps = 185/486 (38%)
Query: 8 FRSTSLPSSFSIHKKLAVKRNSNAVSFMGLLSFSPKTSSFSTGLISISLKQRRSKNSFQV 67
F + L + IH + A LL + T + LI KN
Sbjct: 91 FENCYLEGN-DIH--------ALAAK---LLQENDTTLVKTKELI---------KNYITA 129
Query: 68 RAVAA---PSEAVSG-FDEMVAGTQRKYYMLGGKGGVG----------KTSCAASLAVKF 113
R +A ++ S F + G + + GG+G +T L
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY--HVLVGDL 187
Query: 114 ANNGHPTLVVSTDPAHSLSDSFAQ--D----LTGGQLVPVEGPD----------FPL--- 154
TL F Q + L P PD PL
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN----PSNTPDKDYLLSIPISCPLIGV 243
Query: 155 --FA--------LEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGEL 204
A L P + R + G TG G++
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLK------GATGH-------SQGLVT----------- 279
Query: 205 LDTPPPGLDEAIAIS-------------KVIQFL-----ESQE----YSMFTRIVFDTAP 242
A+AI+ K I L E S+ I+ D+
Sbjct: 280 ----------AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 243 TGHT-----LRLLSLP-DFLDASIGKI---LKLREKIA-----SATSAI-----KSVFGQ 283
L + +L + + + K L +++ A + + +S++G
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL 389
Query: 284 EQN--RQGASDKLERLR----ERMVKVRELFRDTDSTEFVIVTIP---TVMAVSESSRLS 334
+ A L++ R ER +K S F+ V P ++ S ++
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKF--------SNRFLPVASPFHSHLLV-PASDLIN 440
Query: 335 ESLKKENVPVKRLIVNQIIPPSASDCK---FCAMKRKDQMRALEMIKSDSELSSL--MLI 389
+ L K NV A D + + D +R L S S + +I
Sbjct: 441 KDLVKNNVSFN-----------AKDIQIPVYDTFDGSD-LRVL----SGSISERIVDCII 484
Query: 390 EAPLVD 395
P V
Sbjct: 485 RLP-VK 489
Score = 49.7 bits (118), Expect = 2e-06
Identities = 60/340 (17%), Positives = 94/340 (27%), Gaps = 125/340 (36%)
Query: 3 TAACCFRSTSLPSSFSIHKKLAVKRNSNAVSFMGLLSFSPKTSSFSTGLISISLKQRRSK 62
TA + S S F + + +L F G+ R
Sbjct: 279 TAVAIAETDSWES-F----------FVSVRKAITVL--------FFIGV--------RCY 311
Query: 63 NSFQVRAVAAPSEAVSGFDEMVAGTQRKYYMLGGKG--------GVGKTSC------AAS 108
++ ++ P + E G ML V KT+
Sbjct: 312 EAYPNTSL--PPSILEDSLENNEGVPS--PMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 109 LAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTG--GQLVPVEGPDFPLFALEINPEKARE 166
+++ NG LVVS P Q L G L + P +++R
Sbjct: 368 ISLV---NGAKNLVVSGPP---------QSLYGLNLTLRKAKAPS--------GLDQSRI 407
Query: 167 EF--RNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLG-----ELLDTPPPGLDEAIAIS 219
F R + F L + LL +++ +
Sbjct: 408 PFSERKL------KFSNRF---------------LPVASPFHSHLLVPASDLINKDLV-K 445
Query: 220 KVIQFLESQEYSMFTRI-VFDTAPTGHTLRLLS---LPDFLDASIGKILKLR---EKI-- 270
+ F +I V+DT G LR+LS +D I++L E
Sbjct: 446 NNVSFNAKD-----IQIPVYDTF-DGSDLRVLSGSISERIVDC----IIRLPVKWETTTQ 495
Query: 271 ASATSAIKSVFGQEQNRQGASDKLERLRERMVK---VREL 307
AT + FG G + L L R VR +
Sbjct: 496 FKATHIL--DFG-----PGGASGLGVLTHRNKDGTGVRVI 528
Score = 47.4 bits (112), Expect = 9e-06
Identities = 46/273 (16%), Positives = 85/273 (31%), Gaps = 96/273 (35%)
Query: 120 TLVVSTD---PAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKARE---EFRNVTQ 173
L+V T A L + F + L P EG FA + P E +F
Sbjct: 19 VLLVPTASFFIASQLQEQFNKILP----EPTEG-----FAADDEPTTPAELVGKF----- 64
Query: 174 KDGGTGVKDFMDGMGLGMLVEQLGELKLG---ELLDTPPPGLDEAIAISKVIQFLESQEY 230
LG + + K+G ++L+ L E +LE +
Sbjct: 65 ---------------LGYVSSLVEPSKVGQFDQVLNL---CLTEFEN-----CYLEGND- 100
Query: 231 SMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKILKL------------REKIASATSA-- 276
I H L L D ++ K +L R + SA
Sbjct: 101 -----I--------HAL-AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146
Query: 277 ---------IKSVFGQEQNRQGASDKLERLRERMVKVRELFRD--TDSTEFVIVTIPTVM 325
+ ++FG QG +D + E +R+L++ + + + T+
Sbjct: 147 RAVGEGNAQLVAIFGG----QGNTD--DYFEE----LRDLYQTYHVLVGDLIKFSAETLS 196
Query: 326 AVSESSRLSESLKKENVPVKRLIVNQIIPPSAS 358
+ ++ +E + + + + + N P
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Score = 43.1 bits (101), Expect = 2e-04
Identities = 49/327 (14%), Positives = 92/327 (28%), Gaps = 130/327 (39%)
Query: 86 GTQRKYYMLGGKGGVGKTSCAASLAVK--FANNGHPTLVVSTDPAHSLSDSFAQDLTGGQ 143
G+Q + G+G S A + + + A D+ +D G
Sbjct: 1625 GSQEQ--------GMGMDLYKTSKAAQDVW------------NRA----DNHFKDTYG-- 1658
Query: 144 LVPVEGPDFPLFALEI---NP------------EKAREEFRNV---TQKDGGTGVKDFMD 185
F + L+I NP ++ RE + + T DG +
Sbjct: 1659 --------FSI--LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 186 GMGLGMLVEQLGELKL----GELLDT----PPPGLDEAI-AISKVI-QFLES----QEYS 231
+ E G L T P A+ + K + L+S +
Sbjct: 1709 E-----INEHSTSYTFRSEKGLLSATQFTQP------ALTLMEKAAFEDLKSKGLIPADA 1757
Query: 232 MFTRIVFDTAPTGHTL----------RLLSLPDFLDASIGKILKLREKIASATSAIKSVF 281
F A GH+L ++S+ + +++ R + +
Sbjct: 1758 TF-------A--GHSLGEYAALASLADVMSIESLV-----EVVFYRGM-TMQVAVPRDEL 1802
Query: 282 GQEQ--------NRQGASDKLERLRERMVKVRELFRDTDSTEFV-----------IVTIP 322
G+ R AS E L+ V + + T V V
Sbjct: 1803 GRSNYGMIAINPGRVAASFSQEALQYV---VERVGKRTG--WLVEIVNYNVENQQYVAAG 1857
Query: 323 TVMAVSESSRLSESLKKENVPVKRLIV 349
+ A+ + + +K + + + L
Sbjct: 1858 DLRALDTVTNVLNFIKLQKIDIIELQK 1884
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA
segregation, unknown function; HET: ADP; 1.80A
{Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Length = 206
Score = 51.6 bits (124), Expect = 8e-08
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 97 KGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPD 151
KGG GKT+ ++A + +G+ VV TDP SL++ +
Sbjct: 10 KGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEK 64
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 50.5 bits (121), Expect = 2e-07
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSL 131
GKGGVGKT+ AA L A++ V DP L
Sbjct: 7 GKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPDSCL 42
Score = 32.8 bits (75), Expect = 0.15
Identities = 10/91 (10%), Positives = 26/91 (28%), Gaps = 3/91 (3%)
Query: 315 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRAL 374
+ V P + ++ + + + R ++N++ K + + L
Sbjct: 156 MMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRNIKEEK---LIKKHLPEDKIL 212
Query: 375 EMIKSDSELSSLMLIEAPLVDVEIRGVPALR 405
+I + L L + L
Sbjct: 213 GIIPYNELFIELSLKGEEIWQSTNPAFVNLH 243
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium
rectale}
Length = 373
Score = 46.8 bits (111), Expect = 6e-06
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127
GGVG ++ AA+ A+ AN G ++ +
Sbjct: 151 PCGGVGTSTVAAACAIAHANMGKKVFYLNIEQ 182
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein,
structural genomics, PSI-2, protein STRU initiative;
HET: ADP; 2.47A {Synechocystis SP}
Length = 209
Score = 42.8 bits (101), Expect = 6e-05
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 97 KGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVE 148
KGGVGKT+ A L+ A G TL++ DP S + + ++V
Sbjct: 9 KGGVGKTTTAVHLSAYLALQGE-TLLIDGDPNRSATGWGKRGSLPFKVVDER 59
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell
division inhibitor, MINC, MINE, cell hydrolase; HET:
ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Length = 260
Score = 42.6 bits (101), Expect = 9e-05
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
GKGGVGKT+ +A++A A G T+V+
Sbjct: 10 GKGGVGKTTSSAAIATGLAQKGKKTVVIDFA 40
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered,
protein-ADP complex, cell cycle, hydrolase; HET: ADP;
2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A*
1ion_A*
Length = 237
Score = 42.5 bits (101), Expect = 1e-04
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
GKGG GKT+ A+L+V + G L V D
Sbjct: 10 GKGGTGKTTVTANLSVALGDRGRKVLAVDGD 40
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell
division, cell cycle; 2.60A {Archaeoglobus fulgidus}
SCOP: c.37.1.10
Length = 263
Score = 42.6 bits (101), Expect = 1e-04
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
GKGG GKT+ A+L V A GH +V D
Sbjct: 10 GKGGTGKTTITANLGVALAQLGHDVTIVDAD 40
Score = 27.9 bits (63), Expect = 6.4
Identities = 7/40 (17%), Positives = 20/40 (50%)
Query: 315 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 354
E ++V P + ++++ + ++ V ++VN+I
Sbjct: 135 ELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITT 174
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Length = 361
Score = 40.2 bits (94), Expect = 0.001
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 97 KGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127
KGGVGKT+ + ++A FA G L V DP
Sbjct: 10 KGGVGKTTLSTNVAHYFALQGKRVLYVDCDP 40
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome
segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A*
2bek_A*
Length = 257
Score = 39.4 bits (93), Expect = 0.001
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 97 KGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127
KGGVGKT+ A +LA A G L+V DP
Sbjct: 15 KGGVGKTTTAINLAAYLARLGKRVLLVDLDP 45
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter
vibrioides} PDB: 2xj9_A* 2xit_A
Length = 286
Score = 38.6 bits (90), Expect = 0.002
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 97 KGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127
KGG GK++ A L G V+ D
Sbjct: 13 KGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; HET: ATP;
2.20A {Chlorobium tepidum}
Length = 245
Score = 38.0 bits (89), Expect = 0.003
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 95 GGKGGVGKTSCAASLAVKFANNGHP-TLVVSTD 126
KGG G + AA+ A + L V
Sbjct: 11 SAKGGDGGSCIAANFAFALSQEPDIHVLAVDIS 43
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035,
plasmid, DNA binding protein; HET: AGS EPE; 1.83A
{Streptococcus pyogenes}
Length = 298
Score = 37.2 bits (87), Expect = 0.006
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 97 KGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127
KGGVGK+ + A L++ D
Sbjct: 45 KGGVGKSKLSTMFAYLTDKLNLKVLMIDKDL 75
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.70A
{Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Length = 262
Score = 36.4 bits (85), Expect = 0.011
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 96 GKGGVGKTSCAASLAVKFANNGH 118
GKGGVGK++ A LAV +A G
Sbjct: 26 GKGGVGKSTVTALLAVHYARQGK 48
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 36.1 bits (83), Expect = 0.019
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 2/90 (2%)
Query: 39 SFSPKTSSFSTGLISISLKQRRSKNSFQVRAVAAPSEAVSGFDEMVAG--TQRKYYMLGG 96
S F+ I++ + Q + S V DEM G + + G
Sbjct: 229 SHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATG 288
Query: 97 KGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
G GKT + N ++ + +
Sbjct: 289 ATGTGKTLLVSRFVENACANKERAILFAYE 318
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA
bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB:
3ez6_A* 3ez7_A
Length = 398
Score = 35.1 bits (81), Expect = 0.038
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 97 KGGVGKTSCAASLA------VKFANNGHPTLVVSTDPAHSLS 132
KGGV KT SLA LV+ DP S +
Sbjct: 117 KGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSAT 158
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein;
2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Length = 403
Score = 35.1 bits (81), Expect = 0.042
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 97 KGGVGKT----SCAASLAV--KFANNGHPTLVVSTDPAHSLS 132
KGGV KT + A +L V + LV+ DP S +
Sbjct: 120 KGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASST 161
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 34.3 bits (79), Expect = 0.047
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 77 VSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
+ G DE++ G +R +L G G GKT + G P + V+ +
Sbjct: 9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase;
chimerical protein, P-loop protein, capsule
biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus
aureus} PDB: 2ved_A*
Length = 271
Score = 34.1 bits (79), Expect = 0.059
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 99 GVGKTSCAASLAVKFANNGHPTLVVSTD 126
G GK++ AA+LAV +A G+ TL+V D
Sbjct: 93 GAGKSTIAANLAVAYAQAGYKTLIVDGD 120
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium
pasteurianum} SCOP: c.37.1.10
Length = 269
Score = 34.2 bits (79), Expect = 0.062
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDS 134
GKGG+GK++ +L G +VV DP DS
Sbjct: 8 GKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA---DS 43
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 33.8 bits (78), Expect = 0.067
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 77 VSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
+ FD+++ G Q + L G+ G GKT + K +G P + V+T+
Sbjct: 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur,
metal-binding, molybdenum, oxidoreductase; HET: HCA CFN
CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii}
SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E*
1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A
1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A*
1rw4_A
Length = 289
Score = 33.8 bits (78), Expect = 0.074
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDS 134
GKGG+GK++ +L A G ++V DP DS
Sbjct: 9 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA---DS 44
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine
kinase domain, signaling protein, transferase, inner
membrane, membrane; 2.50A {Escherichia coli}
Length = 299
Score = 33.8 bits (78), Expect = 0.078
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 99 GVGKTSCAASLAVKFANNGHPTLVVSTD 126
GKT +++LA A + L + D
Sbjct: 115 DSGKTFVSSTLAAVIAQSDQKVLFIDAD 142
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding
domain, walker A motif, B protein kinase,
oligomerization; HET: ADP; 3.20A {Escherichia coli}
Length = 286
Score = 33.4 bits (77), Expect = 0.10
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 99 GVGKTSCAASLAVKFANNGHPTLVVSTD 126
+G T A+LA + L++ D
Sbjct: 103 SIGMTFVCANLAAVISQTNKRVLLIDCD 130
>3end_A Light-independent protochlorophyllide reductase iron-sulfur
ATP-binding protein; BCHL, electron donor, DPOR, Fe
protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter
sphaeroides 2} PDB: 3fwy_A*
Length = 307
Score = 33.6 bits (77), Expect = 0.10
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDS 134
GKGG+GK++ +++L+ F+ G L + DP H DS
Sbjct: 48 GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKH---DS 83
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid,
borellia burgdorferi, plasmid partition protein, iodide;
2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Length = 267
Score = 33.0 bits (76), Expect = 0.14
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 9/35 (25%)
Query: 97 KGGVGK-TSC---AASLAVKFANNGHPTLVVSTDP 127
KGGVGK TS A L+ + L++ D
Sbjct: 36 KGGVGKSTSAIILATLLSK-----NNKVLLIDMDT 65
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 32.1 bits (72), Expect = 0.24
Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 12/126 (9%)
Query: 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP--AHSLSDSFAQDLTGGQLVPVEGP 150
+LGG G +GK LA++ A GH +V S A + + + + + ++
Sbjct: 5 LLGGTGNLGKG-----LALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNE 59
Query: 151 D----FPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGML-VEQLGELKLGELL 205
D + L I E A + R++ V + + G E E++
Sbjct: 60 DAAEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIV 119
Query: 206 DTPPPG 211
Sbjct: 120 AEVLES 125
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 32.0 bits (73), Expect = 0.26
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 43 KTSSFSTGLISISLKQRRSKNSFQVRAVAAPSEAVSGFDEMVAGTQRKYYMLGGKGGVGK 102
++ ++ SL + +++A+ V+ ++ + K L G GVGK
Sbjct: 11 QSMFMPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPG---KKMKGLYLHGSFGVGK 67
Query: 103 TSCAASLAVKFANNGHPTLVVST 125
T A++A + A +L+V
Sbjct: 68 TYLLAAIANELAKRNVSSLIVYV 90
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A
{Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB:
1j8y_F
Length = 297
Score = 32.1 bits (74), Expect = 0.29
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD---PA 128
ML G G GKT+ A LA + G +V D PA
Sbjct: 102 MLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPA 140
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 31.8 bits (72), Expect = 0.34
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 77 VSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTD 126
+ GFDE++ G + +L G G GKT+ AA K A G P + V+ +
Sbjct: 16 IPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase,
ultrahigh resolution, protein transport; 1.10A {Thermus
aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B*
1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B*
2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A
1ffh_A 2ng1_A*
Length = 295
Score = 31.3 bits (72), Expect = 0.48
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD---PA 128
L G G GKT+ AA LA+ + G L+V+ D PA
Sbjct: 102 FLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA 140
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.52
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 15/66 (22%)
Query: 262 KILKLREK----IAS--ATSAIKSVFGQEQNRQGASDKLE----RLRERMVKVRELFRDT 311
I K RE+ + A S + +++ R+ A LE R E++ K + R
Sbjct: 86 SIRKWREEQRKRLQELDAASKVM----EQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141
Query: 312 DSTEFV 317
D F
Sbjct: 142 DK-AFY 146
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding,
signal recognition particle, GTP-binding, RNA-binding;
2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Length = 432
Score = 31.4 bits (72), Expect = 0.53
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD---PA 128
+L G G GKT+ AA LA G +++ D PA
Sbjct: 103 LLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPA 141
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition
particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A
{Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Length = 433
Score = 31.4 bits (72), Expect = 0.59
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD---PA 128
ML G G GKT+ A LA + G+ +V+ D PA
Sbjct: 101 MLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPA 139
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 30.8 bits (70), Expect = 0.60
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 94 LGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
L G G GK++ + LA + G P VV D
Sbjct: 27 LSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD 59
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.68
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 7/32 (21%)
Query: 193 VEQL-GELKLGELLDTPPPGLDEAIAISKVIQ 223
+++L LKL D+ P A+AI ++
Sbjct: 22 LKKLQASLKLYAD-DSAP-----ALAIKATME 47
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal
recognition particle, SRP-GTPase, protein targeting,
cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus
furiosus}
Length = 443
Score = 31.0 bits (71), Expect = 0.71
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD---PA 128
++ G G GKT+ A LA F G+ VV +D P
Sbjct: 104 LMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPG 142
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP,
translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Length = 504
Score = 31.1 bits (71), Expect = 0.81
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
M G G GKT+ + LA + G T ++ D
Sbjct: 105 MFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M
domain, RNA-binding, signal sequence-binding,
helix-turn-helix, protein targeting; 3.20A {Thermus
aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB:
2iy3_A
Length = 425
Score = 30.6 bits (70), Expect = 0.92
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD---PA 128
L G G GKT+ AA LA+ + G L+V+ D PA
Sbjct: 102 FLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA 140
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 28.9 bits (64), Expect = 2.4
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLS 132
G G VG+T +A A+ GH + + DP +L+
Sbjct: 26 GTGTVGRT-----MAGALADLGHEVTIGTRDPKATLA 57
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 29.1 bits (64), Expect = 3.2
Identities = 39/269 (14%), Positives = 79/269 (29%), Gaps = 16/269 (5%)
Query: 79 GFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQD 138
GF L G G GK++ A + +T A S S S +
Sbjct: 19 GFFARTFDFDELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKG 78
Query: 139 LTGGQLVPVEGPDFPLFALEINPEKARE-----EFRNVTQKDGGTGVKDF-MDGMGLGML 192
L G LE +A+ + + +D ++ F + + +
Sbjct: 79 LYG-----KLKAGVCYAVLETVNSRAQRIITGVRLQQIAGRDKKVDIRPFSLQNVPMTDS 133
Query: 193 VEQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHTLRLLSL 252
V L ++ + + F + + +FD LR S
Sbjct: 134 VISLFTEQVANKARVLSLNDLKEKFEETAVTFKPYHSITDYHSFMFDLGILPKRLRSSSD 193
Query: 253 PDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTD 312
+ I L I+S + + +N G + + + + +
Sbjct: 194 RNKFYKLIEA--SLYGGISSVITKSLRDYLLPEN-SGVRQAFQDMEAALRENSGGSGGSI 250
Query: 313 STEFVIVTIPTVMAVSES--SRLSESLKK 339
S E V + + ++ +L++ L+
Sbjct: 251 SAESVANILRKTIQREQNRILQLNQGLQN 279
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 28.7 bits (64), Expect = 3.7
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 43 KTSSFSTGLISISLKQRRSKNSFQVRAVAAPSEAVSGFDEMVAGTQRKYYMLGGKGGVGK 102
+ S I L N+ ++ A +A + V + ++K L G G+GK
Sbjct: 110 QLVSLPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSA----EQKGLYLYGDMGIGK 165
Query: 103 TSCAASLAVKFA-NNGHPTLVVST 125
+ A++A + + G T ++
Sbjct: 166 SYLLAAMAHELSEKKGVSTTLLHF 189
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 28.1 bits (62), Expect = 4.7
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 83 MVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
M +L G G GK++ A +LA G P + +D
Sbjct: 3 MTDDLGGNILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSD 43
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 27.5 bits (62), Expect = 5.8
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANN 116
T+ K ++G GGVGK+ +L ++ N
Sbjct: 2 TEYKLVVVGA-GGVGKS----ALTIQLIQN 26
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 27.6 bits (62), Expect = 5.8
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 69 AVAAPSEAVSGFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANN 116
+ F M + K + G GVGK+ +L V+F
Sbjct: 9 SGVDLGTENLYFQSMAKSAEVKLAIFGR-AGVGKS----ALVVRFLTK 51
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 28.1 bits (63), Expect = 5.9
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 74 SEAVSGFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTD 126
+ + D+ KY +L G G GKT+ A LA ++TD
Sbjct: 90 CDMLPSADKWQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 27.7 bits (61), Expect = 6.5
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 94 LGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128
+ G G GK+ L +K G+ + S +P
Sbjct: 24 IFGTGDFGKS-----LGLKMLQCGYSVVFGSRNPQ 53
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 27.8 bits (61), Expect = 6.8
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 92 YMLGGKGGVGKTSCAASLAVKFAN 115
L GG GK+ A LA + A
Sbjct: 33 GALVSPGGAGKSMLALQLAAQIAG 56
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 27.3 bits (61), Expect = 7.5
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
G GKT+ A L+ G V D
Sbjct: 29 GLSRSGKTTLANQLSQTLREQGISVCVFHMD 59
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 27.5 bits (61), Expect = 7.5
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 99 GVGKTSCAASLAVKFANNGHPTLVVSTD 126
GVGK++ + +LA + N +V+ +D
Sbjct: 14 GVGKSTFSKNLAKILSKNNIDVIVLGSD 41
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific
opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter
SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 27.7 bits (61), Expect = 7.6
Identities = 13/63 (20%), Positives = 17/63 (26%), Gaps = 12/63 (19%)
Query: 94 LGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFP 153
LG G G A A G L D +++ + EGP
Sbjct: 10 LGL-GNGGHA-----FAAYLALKGQSVLAWDIDAQR------IKEIQDRGAIIAEGPGLA 57
Query: 154 LFA 156
A
Sbjct: 58 GTA 60
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 27.1 bits (61), Expect = 7.8
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANN 116
+ K +LG GGVGK+ +L V+F
Sbjct: 2 REYKLVVLGS-GGVGKS----ALTVQFVQG 26
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 27.1 bits (61), Expect = 8.3
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANN 116
+ K +LG GGVGK+ +L V+F
Sbjct: 2 REYKVVVLGS-GGVGKS----ALTVQFVTG 26
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 27.1 bits (61), Expect = 8.5
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 83 MVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANN 116
M RK +LG VGK+ SL ++F
Sbjct: 1 MPQSKSRKIAILGY-RSVGKS----SLTIQFVEG 29
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 27.2 bits (61), Expect = 8.5
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 78 SGFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANN 116
F M RK +LG VGKT SLA +F
Sbjct: 14 LYFQGMPLVRYRKVVILGY-RCVGKT----SLAHQFVEG 47
>2pt1_A Iron transport protein; C-clamp, iron-binding protein,
solute-binding protein, perip binding protein, ABC
transporter, metal transport; 2.00A {Synechocystis SP}
PDB: 2pt2_A 3f11_A
Length = 334
Score = 27.4 bits (61), Expect = 9.0
Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 28 NSNAVSFMGLLSFSPKTSSFSTGLISISLKQRRSKNSFQVRAVAAPSEAVSGFDEMVAGT 87
N + V+ + + T +++ G +S ++ + ++ Q+ AV++ E
Sbjct: 160 NQSLVASLVVADGEESTLAWAKGFVSNFAREPQGNDTAQIEAVSS--------GEADLTL 211
Query: 88 QRKYY---MLGGKGGVGKTSCAASLAVKFANNG 117
YY +L + + + A ++ V F N
Sbjct: 212 ANTYYMGRLLESEDP-AQKAIAENVGVFFPNQE 243
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A
{Bacillus phage SPP1}
Length = 315
Score = 27.5 bits (62), Expect = 9.1
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 78 SGF---DEMVAGTQRK-YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124
SGF D M G +R+ + ++ + +GKT+ A A ++N + S
Sbjct: 53 SGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 27.1 bits (60), Expect = 9.7
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVST 125
G G VGKT L + +AN+ P V T
Sbjct: 25 GDGAVGKT----CLLMSYANDAFPEEYVPT 50
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 26.8 bits (60), Expect = 9.8
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 85 AGTQRKYYMLGGKGGVGKTSCAASLAVKFANN 116
T+ K ++G GVGK+ +L ++ N
Sbjct: 1 GSTEYKLVVVGA-DGVGKS----ALTIQLIQN 27
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 27.6 bits (62), Expect = 10.0
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 247 LRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGAS---DKLERLRERMVK 303
LR + P L K+ ++R++ +A Q Q + A+ D +RLRE++
Sbjct: 387 LRSFTTPPNLKELEQKLDEVRKEKDAAV--------QSQEFEKAASLRDTEQRLREQVED 438
Query: 304 VRELFRDTDSTEFVIVT 320
++ +++ E VT
Sbjct: 439 TKKSWKEKQGQENSEVT 455
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.368
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,095,439
Number of extensions: 372704
Number of successful extensions: 1018
Number of sequences better than 10.0: 1
Number of HSP's gapped: 969
Number of HSP's successfully gapped: 89
Length of query: 413
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 317
Effective length of database: 4,021,377
Effective search space: 1274776509
Effective search space used: 1274776509
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.2 bits)