Query 015098
Match_columns 413
No_of_seqs 195 out of 2289
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 06:39:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015098.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015098hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1E-61 3.5E-66 458.3 45.4 375 36-412 52-434 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 5.3E-62 1.8E-66 459.2 40.8 377 37-413 34-410 (410)
3 3eiq_A Eukaryotic initiation f 100.0 3.2E-61 1.1E-65 454.6 37.9 383 31-413 31-414 (414)
4 2i4i_A ATP-dependent RNA helic 100.0 2.6E-59 9E-64 441.9 40.8 376 36-412 11-409 (417)
5 1s2m_A Putative ATP-dependent 100.0 7.1E-59 2.4E-63 436.5 42.1 373 38-412 19-391 (400)
6 1fuu_A Yeast initiation factor 100.0 1.3E-60 4.5E-65 447.6 22.5 387 26-413 7-393 (394)
7 1xti_A Probable ATP-dependent 100.0 1.7E-57 5.9E-62 425.9 42.4 369 40-409 8-381 (391)
8 3pey_A ATP-dependent RNA helic 100.0 7.7E-57 2.6E-61 422.1 39.7 366 38-407 3-379 (395)
9 3fht_A ATP-dependent RNA helic 100.0 1.4E-56 4.7E-61 422.7 39.6 369 38-409 23-403 (412)
10 1hv8_A Putative ATP-dependent 100.0 1.1E-55 3.6E-60 410.3 42.4 361 38-406 4-365 (367)
11 3fmp_B ATP-dependent RNA helic 100.0 2.7E-56 9.4E-61 427.9 20.4 367 39-408 91-469 (479)
12 2z0m_A 337AA long hypothetical 100.0 3.7E-53 1.3E-57 388.5 36.8 336 47-400 1-336 (337)
13 3sqw_A ATP-dependent RNA helic 100.0 2.5E-53 8.4E-58 415.7 34.9 359 46-404 27-416 (579)
14 3i5x_A ATP-dependent RNA helic 100.0 3.4E-53 1.2E-57 414.6 34.3 358 47-404 79-467 (563)
15 3fho_A ATP-dependent RNA helic 100.0 9.8E-55 3.3E-59 418.2 22.0 367 39-409 118-494 (508)
16 2v1x_A ATP-dependent DNA helic 100.0 6.8E-51 2.3E-55 394.8 33.6 346 36-394 15-382 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 2.4E-50 8.3E-55 387.4 33.8 339 40-395 2-352 (523)
18 3oiy_A Reverse gyrase helicase 100.0 5.2E-49 1.8E-53 370.7 28.1 325 51-399 10-376 (414)
19 2zj8_A DNA helicase, putative 100.0 1.7E-47 5.9E-52 383.3 28.1 352 41-408 2-407 (720)
20 2va8_A SSO2462, SKI2-type heli 100.0 9.4E-47 3.2E-51 378.2 32.4 354 40-409 8-430 (715)
21 2p6r_A Afuhel308 helicase; pro 100.0 2E-47 6.8E-52 381.8 22.8 352 41-409 2-409 (702)
22 4a2p_A RIG-I, retinoic acid in 100.0 6.1E-47 2.1E-51 370.6 22.2 329 59-389 4-511 (556)
23 2ykg_A Probable ATP-dependent 100.0 3.3E-47 1.1E-51 381.5 20.1 354 52-407 3-541 (696)
24 3tbk_A RIG-I helicase domain; 100.0 7.5E-46 2.6E-50 362.8 25.8 331 62-394 4-515 (555)
25 3l9o_A ATP-dependent RNA helic 100.0 6.9E-46 2.4E-50 381.3 25.2 348 41-406 163-615 (1108)
26 1wp9_A ATP-dependent RNA helic 100.0 1.2E-44 4.1E-49 348.8 30.6 323 62-389 9-478 (494)
27 2xgj_A ATP-dependent RNA helic 100.0 4.8E-44 1.6E-48 364.7 35.6 321 56-393 81-507 (1010)
28 4a2q_A RIG-I, retinoic acid in 100.0 4.6E-45 1.6E-49 369.1 27.6 331 57-389 243-752 (797)
29 4a2w_A RIG-I, retinoic acid in 100.0 7.3E-44 2.5E-48 363.8 26.5 331 57-389 243-752 (936)
30 4ddu_A Reverse gyrase; topoiso 100.0 8.6E-44 2.9E-48 365.7 26.9 321 57-399 74-503 (1104)
31 1gku_B Reverse gyrase, TOP-RG; 100.0 1.7E-43 5.8E-48 363.9 22.5 321 56-400 52-468 (1054)
32 4a4z_A Antiviral helicase SKI2 100.0 2.6E-42 9E-47 352.0 28.3 310 58-384 36-490 (997)
33 4gl2_A Interferon-induced heli 100.0 2.2E-43 7.6E-48 354.0 19.9 322 62-386 7-519 (699)
34 1gm5_A RECG; helicase, replica 100.0 6.5E-43 2.2E-47 345.7 21.4 321 49-389 356-700 (780)
35 2eyq_A TRCF, transcription-rep 100.0 1.5E-40 5.2E-45 343.8 35.0 323 44-386 585-922 (1151)
36 4f92_B U5 small nuclear ribonu 100.0 6.1E-41 2.1E-45 356.0 32.1 340 47-392 911-1314(1724)
37 1tf5_A Preprotein translocase 100.0 9.7E-41 3.3E-45 324.0 30.4 322 57-388 79-547 (844)
38 2oca_A DAR protein, ATP-depend 100.0 7.3E-42 2.5E-46 330.5 20.5 310 61-384 112-453 (510)
39 4f92_B U5 small nuclear ribonu 100.0 2.1E-41 7.3E-46 359.5 22.7 330 59-393 76-480 (1724)
40 2fwr_A DNA repair protein RAD2 100.0 1.1E-40 3.9E-45 319.0 19.1 293 62-386 93-454 (472)
41 2whx_A Serine protease/ntpase/ 100.0 4.5E-41 1.5E-45 327.0 11.8 322 45-407 155-502 (618)
42 2fsf_A Preprotein translocase 100.0 7.2E-39 2.5E-43 310.0 26.3 321 58-388 71-585 (853)
43 1nkt_A Preprotein translocase 100.0 4E-38 1.4E-42 305.2 30.0 322 57-388 107-619 (922)
44 2xau_A PRE-mRNA-splicing facto 100.0 3.2E-39 1.1E-43 321.6 21.2 337 36-388 68-445 (773)
45 2jlq_A Serine protease subunit 100.0 4.5E-39 1.5E-43 304.3 16.8 288 59-386 1-311 (451)
46 1yks_A Genome polyprotein [con 100.0 2.6E-40 9E-45 311.2 6.6 287 73-407 4-323 (440)
47 2wv9_A Flavivirin protease NS2 100.0 2.4E-39 8.1E-44 316.7 11.5 308 54-400 202-550 (673)
48 3h1t_A Type I site-specific re 100.0 2.8E-38 9.7E-43 310.2 19.2 299 62-375 178-545 (590)
49 3o8b_A HCV NS3 protease/helica 100.0 1.7E-38 5.7E-43 305.9 13.3 293 62-404 217-536 (666)
50 3dmq_A RNA polymerase-associat 100.0 7E-38 2.4E-42 320.1 18.2 333 61-398 152-625 (968)
51 1z63_A Helicase of the SNF2/RA 100.0 3E-36 1E-40 290.5 25.0 309 62-386 37-453 (500)
52 3ber_A Probable ATP-dependent 100.0 9.5E-36 3.3E-40 259.4 25.4 211 33-243 36-247 (249)
53 2z83_A Helicase/nucleoside tri 100.0 1.7E-37 5.9E-42 293.8 15.3 274 70-386 14-313 (459)
54 2v6i_A RNA helicase; membrane, 100.0 9.7E-37 3.3E-41 286.4 19.2 269 76-383 1-288 (431)
55 3fe2_A Probable ATP-dependent 100.0 1E-35 3.5E-40 258.7 24.3 212 35-246 24-240 (242)
56 1qde_A EIF4A, translation init 100.0 1.1E-35 3.9E-40 255.7 22.4 214 31-245 5-218 (224)
57 1vec_A ATP-dependent RNA helic 100.0 3.8E-35 1.3E-39 249.2 25.0 202 40-241 3-205 (206)
58 3bor_A Human initiation factor 100.0 1.4E-35 4.9E-40 256.9 21.3 215 29-243 19-234 (237)
59 3mwy_W Chromo domain-containin 100.0 9E-35 3.1E-39 293.1 28.0 334 61-402 235-702 (800)
60 1q0u_A Bstdead; DEAD protein, 100.0 2.3E-35 7.7E-40 252.7 19.9 207 39-245 3-213 (219)
61 2oxc_A Probable ATP-dependent 100.0 1.4E-34 4.7E-39 249.6 22.9 206 36-242 20-227 (230)
62 1z3i_X Similar to RAD54-like; 100.0 4.6E-33 1.6E-37 274.0 36.3 332 62-400 55-544 (644)
63 1wrb_A DJVLGB; RNA helicase, D 100.0 5.4E-35 1.8E-39 256.2 19.9 218 38-255 21-251 (253)
64 3iuy_A Probable ATP-dependent 100.0 1.2E-34 4.2E-39 249.8 21.9 208 34-242 13-227 (228)
65 3rc3_A ATP-dependent RNA helic 100.0 1.1E-34 3.8E-39 282.8 24.0 281 73-393 151-451 (677)
66 2gxq_A Heat resistant RNA depe 100.0 6.8E-34 2.3E-38 241.6 24.2 201 41-243 2-205 (207)
67 1t6n_A Probable ATP-dependent 100.0 5.6E-34 1.9E-38 244.4 23.1 206 37-242 11-219 (220)
68 2pl3_A Probable ATP-dependent 100.0 2E-33 6.7E-38 243.6 25.0 207 37-244 22-233 (236)
69 3ly5_A ATP-dependent RNA helic 100.0 2.5E-33 8.5E-38 246.1 22.0 199 40-238 52-257 (262)
70 3fmo_B ATP-dependent RNA helic 100.0 1.8E-33 6.3E-38 251.2 21.4 204 38-244 90-298 (300)
71 3jux_A Protein translocase sub 100.0 2.1E-31 7.2E-36 252.9 33.7 318 58-388 72-589 (822)
72 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.2E-32 4.1E-37 279.3 25.3 311 61-384 270-707 (1038)
73 3dkp_A Probable ATP-dependent 100.0 2.1E-32 7.3E-37 238.5 18.5 211 35-245 20-242 (245)
74 1fuk_A Eukaryotic initiation f 100.0 9.2E-29 3.1E-33 201.4 18.8 163 251-413 2-164 (165)
75 2ipc_A Preprotein translocase 100.0 3.1E-27 1E-31 228.6 30.4 130 58-195 76-215 (997)
76 2hjv_A ATP-dependent RNA helic 100.0 6.8E-28 2.3E-32 195.7 20.3 158 248-406 5-162 (163)
77 2rb4_A ATP-dependent RNA helic 100.0 4.4E-28 1.5E-32 199.4 18.4 163 248-410 3-171 (175)
78 1c4o_A DNA nucleotide excision 100.0 2.7E-27 9.2E-32 232.6 25.8 172 213-394 380-558 (664)
79 1t5i_A C_terminal domain of A 100.0 1.1E-27 3.7E-32 196.0 18.6 160 250-410 3-163 (172)
80 2p6n_A ATP-dependent RNA helic 100.0 6.4E-28 2.2E-32 200.3 16.7 179 232-412 9-188 (191)
81 2jgn_A DBX, DDX3, ATP-dependen 100.0 1.2E-27 4E-32 198.0 17.3 165 247-412 14-179 (185)
82 2d7d_A Uvrabc system protein B 100.0 2.7E-26 9.4E-31 225.4 26.2 170 213-392 386-562 (661)
83 3eaq_A Heat resistant RNA depe 99.9 3.2E-26 1.1E-30 193.8 18.8 145 263-407 15-159 (212)
84 3i32_A Heat resistant RNA depe 99.9 2.2E-25 7.4E-30 197.3 19.2 154 253-407 3-156 (300)
85 2yjt_D ATP-dependent RNA helic 99.9 2E-27 7E-32 194.3 0.0 156 252-407 3-158 (170)
86 3b6e_A Interferon-induced heli 99.9 5.6E-25 1.9E-29 187.8 10.0 164 58-222 29-216 (216)
87 2vl7_A XPD; helicase, unknown 99.9 1.6E-23 5.5E-28 201.9 17.9 102 278-385 383-520 (540)
88 3crv_A XPD/RAD3 related DNA he 99.9 3.7E-21 1.3E-25 186.2 30.8 309 62-386 3-531 (551)
89 1rif_A DAR protein, DNA helica 99.9 7.6E-23 2.6E-27 181.7 8.8 153 62-226 113-265 (282)
90 3llm_A ATP-dependent RNA helic 99.9 7.1E-21 2.4E-25 164.1 14.3 171 48-227 47-222 (235)
91 2fz4_A DNA repair protein RAD2 99.8 2.6E-20 8.9E-25 160.2 14.6 139 61-226 92-231 (237)
92 4a15_A XPD helicase, ATP-depen 99.8 6.6E-19 2.2E-23 171.7 26.1 81 62-144 3-87 (620)
93 1z5z_A Helicase of the SNF2/RA 99.8 4.7E-19 1.6E-23 154.9 13.1 134 263-396 94-236 (271)
94 1w36_D RECD, exodeoxyribonucle 98.8 6.4E-09 2.2E-13 101.4 9.0 146 64-222 151-298 (608)
95 4b3f_X DNA-binding protein smu 98.6 9.7E-08 3.3E-12 94.1 9.0 67 62-131 189-256 (646)
96 3e1s_A Exodeoxyribonuclease V, 98.6 3.8E-07 1.3E-11 88.0 12.2 123 62-222 189-315 (574)
97 2gk6_A Regulator of nonsense t 98.5 6.7E-07 2.3E-11 87.6 13.3 70 60-131 178-247 (624)
98 3upu_A ATP-dependent DNA helic 98.5 4.4E-07 1.5E-11 85.7 11.2 134 58-222 21-164 (459)
99 2xzl_A ATP-dependent helicase 98.5 8.3E-07 2.8E-11 88.9 13.6 70 60-131 358-427 (802)
100 2wjy_A Regulator of nonsense t 98.4 1.4E-06 4.9E-11 87.1 13.0 70 60-131 354-423 (800)
101 3lfu_A DNA helicase II; SF1 he 98.4 4.3E-05 1.5E-09 75.5 21.6 71 61-133 8-79 (647)
102 3hgt_A HDA1 complex subunit 3; 98.2 2.6E-05 8.9E-10 68.3 13.1 122 263-389 107-240 (328)
103 1xx6_A Thymidine kinase; NESG, 97.6 8.8E-05 3E-09 60.5 6.4 40 76-118 7-46 (191)
104 3vkw_A Replicase large subunit 97.6 0.00019 6.5E-09 66.0 8.2 108 78-222 162-269 (446)
105 2o0j_A Terminase, DNA packagin 97.5 0.00088 3E-08 60.8 12.3 72 62-134 163-234 (385)
106 2b8t_A Thymidine kinase; deoxy 97.5 0.00011 3.8E-09 61.4 5.7 90 77-194 12-101 (223)
107 2orw_A Thymidine kinase; TMTK, 97.4 0.00052 1.8E-08 55.7 8.7 39 77-118 3-41 (184)
108 1uaa_A REP helicase, protein ( 97.4 0.00018 6.1E-09 71.4 6.8 70 62-133 2-72 (673)
109 2j9r_A Thymidine kinase; TK1, 97.4 0.0002 6.7E-09 59.0 5.6 40 77-119 28-67 (214)
110 3ec2_A DNA replication protein 97.3 0.00065 2.2E-08 54.9 7.7 20 76-95 37-56 (180)
111 1a5t_A Delta prime, HOLB; zinc 97.3 0.00048 1.6E-08 61.9 7.5 37 63-99 3-46 (334)
112 3cpe_A Terminase, DNA packagin 97.3 0.0026 8.9E-08 61.8 13.1 73 62-135 163-235 (592)
113 1pjr_A PCRA; DNA repair, DNA r 97.3 0.00056 1.9E-08 68.2 8.1 70 61-132 10-80 (724)
114 2orv_A Thymidine kinase; TP4A 97.2 0.00057 2E-08 56.8 6.1 40 77-119 19-58 (234)
115 3u4q_A ATP-dependent helicase/ 97.1 0.00067 2.3E-08 71.7 7.6 104 62-173 10-116 (1232)
116 1w4r_A Thymidine kinase; type 97.1 0.00076 2.6E-08 54.6 6.1 38 77-117 20-57 (195)
117 3e2i_A Thymidine kinase; Zn-bi 97.1 0.00061 2.1E-08 55.9 5.5 41 76-119 27-67 (219)
118 2chg_A Replication factor C sm 97.1 0.004 1.4E-07 51.8 10.9 41 181-222 101-141 (226)
119 3co5_A Putative two-component 97.1 0.002 6.7E-08 49.9 8.0 20 75-94 25-44 (143)
120 1l8q_A Chromosomal replication 97.0 0.0021 7.1E-08 57.4 9.0 19 77-95 37-55 (324)
121 2kjq_A DNAA-related protein; s 97.0 0.00026 8.9E-09 55.3 2.2 20 76-95 35-54 (149)
122 3te6_A Regulatory protein SIR3 97.0 0.0025 8.5E-08 56.3 8.7 25 77-102 45-69 (318)
123 2v1u_A Cell division control p 96.9 0.0036 1.2E-07 57.3 9.1 20 76-95 43-62 (387)
124 2zpa_A Uncharacterized protein 96.8 0.0019 6.6E-08 62.5 7.3 113 62-224 175-289 (671)
125 1d2n_A N-ethylmaleimide-sensit 96.8 0.017 5.9E-07 49.9 12.9 19 77-95 64-82 (272)
126 3n70_A Transport activator; si 96.8 0.0027 9.1E-08 49.2 6.8 20 75-94 22-41 (145)
127 2z4s_A Chromosomal replication 96.8 0.0038 1.3E-07 58.2 8.4 39 77-116 130-168 (440)
128 3bos_A Putative DNA replicatio 96.6 0.0023 7.9E-08 54.2 5.5 20 76-95 51-70 (242)
129 3u61_B DNA polymerase accessor 96.6 0.011 3.6E-07 52.8 10.1 39 182-220 105-143 (324)
130 2qby_B CDC6 homolog 3, cell di 96.4 0.0078 2.7E-07 55.0 8.1 19 77-95 45-63 (384)
131 3h4m_A Proteasome-activating n 96.4 0.011 3.8E-07 51.5 8.4 53 39-94 13-68 (285)
132 2w58_A DNAI, primosome compone 96.4 0.0093 3.2E-07 49.0 7.5 18 78-95 55-72 (202)
133 3syl_A Protein CBBX; photosynt 96.3 0.0022 7.4E-08 56.8 3.7 19 77-95 67-85 (309)
134 1iqp_A RFCS; clamp loader, ext 96.3 0.0095 3.3E-07 53.0 7.8 39 181-220 109-147 (327)
135 1sxj_D Activator 1 41 kDa subu 96.2 0.0076 2.6E-07 54.4 6.8 40 182-222 133-172 (353)
136 1fnn_A CDC6P, cell division co 96.2 0.0052 1.8E-07 56.2 5.5 17 79-95 46-62 (389)
137 3pfi_A Holliday junction ATP-d 96.1 0.037 1.3E-06 49.5 10.8 19 77-95 55-73 (338)
138 2p65_A Hypothetical protein PF 96.1 0.015 5.1E-07 46.7 7.2 19 77-95 43-61 (187)
139 3kl4_A SRP54, signal recogniti 96.0 0.027 9.1E-07 51.9 9.4 132 77-234 97-234 (433)
140 1njg_A DNA polymerase III subu 96.0 0.063 2.2E-06 45.0 11.0 18 78-95 46-63 (250)
141 1g5t_A COB(I)alamin adenosyltr 95.9 0.022 7.7E-07 46.0 7.3 135 77-229 28-169 (196)
142 2qby_A CDC6 homolog 1, cell di 95.9 0.032 1.1E-06 50.7 9.3 19 77-95 45-63 (386)
143 1sxj_E Activator 1 40 kDa subu 95.8 0.026 9E-07 50.8 8.4 43 181-224 133-175 (354)
144 3eie_A Vacuolar protein sortin 95.7 0.036 1.2E-06 49.2 8.8 55 38-95 13-69 (322)
145 2gno_A DNA polymerase III, gam 95.7 0.027 9.3E-07 49.5 7.8 39 181-220 81-119 (305)
146 1sxj_B Activator 1 37 kDa subu 95.7 0.022 7.5E-07 50.5 7.1 37 183-220 108-144 (323)
147 3dm5_A SRP54, signal recogniti 95.6 0.084 2.9E-06 48.7 10.7 58 77-140 100-159 (443)
148 1gm5_A RECG; helicase, replica 95.5 0.071 2.4E-06 53.2 10.5 102 256-357 392-500 (780)
149 3pvs_A Replication-associated 95.3 0.0091 3.1E-07 55.7 3.1 18 78-95 51-68 (447)
150 1sxj_C Activator 1 40 kDa subu 95.2 0.067 2.3E-06 47.9 8.6 39 181-220 109-147 (340)
151 3vfd_A Spastin; ATPase, microt 95.1 0.063 2.2E-06 49.1 8.2 19 77-95 148-166 (389)
152 1jr3_A DNA polymerase III subu 95.0 0.049 1.7E-06 49.4 7.3 39 181-220 118-156 (373)
153 2qp9_X Vacuolar protein sortin 94.9 0.09 3.1E-06 47.4 8.7 19 77-95 84-102 (355)
154 1w5s_A Origin recognition comp 94.9 0.055 1.9E-06 49.7 7.3 19 77-95 50-70 (412)
155 2chq_A Replication factor C sm 94.8 0.013 4.3E-07 52.0 2.7 17 79-95 40-56 (319)
156 1sxj_A Activator 1 95 kDa subu 94.6 0.032 1.1E-06 53.2 5.1 41 182-224 148-190 (516)
157 2r6a_A DNAB helicase, replicat 94.6 0.088 3E-06 49.2 8.0 42 74-117 200-241 (454)
158 3hu3_A Transitional endoplasmi 94.4 0.15 5.3E-06 47.9 9.2 43 183-225 298-350 (489)
159 3oiy_A Reverse gyrase helicase 94.4 0.2 6.7E-06 46.1 9.8 100 257-356 40-148 (414)
160 3hjh_A Transcription-repair-co 94.1 0.1 3.6E-06 48.9 7.1 74 268-354 372-445 (483)
161 1hqc_A RUVB; extended AAA-ATPa 94.0 0.084 2.9E-06 46.8 6.3 19 77-95 38-56 (324)
162 1n0w_A DNA repair protein RAD5 93.9 0.33 1.1E-05 40.7 9.5 43 74-116 21-66 (243)
163 2q6t_A DNAB replication FORK h 93.9 0.053 1.8E-06 50.6 4.8 52 74-128 197-248 (444)
164 1t6n_A Probable ATP-dependent 93.4 0.63 2.2E-05 38.3 10.2 98 256-356 54-167 (220)
165 2hjv_A ATP-dependent RNA helic 93.2 0.44 1.5E-05 37.3 8.5 73 109-191 36-112 (163)
166 2rb4_A ATP-dependent RNA helic 93.1 0.47 1.6E-05 37.6 8.7 73 108-190 34-110 (175)
167 4a1f_A DNAB helicase, replicat 92.8 0.058 2E-06 48.0 3.1 51 74-128 43-93 (338)
168 1fuk_A Eukaryotic initiation f 92.8 0.64 2.2E-05 36.4 9.0 74 108-191 30-107 (165)
169 2fna_A Conserved hypothetical 92.4 3.6 0.00012 36.3 14.7 53 166-223 124-179 (357)
170 2eyq_A TRCF, transcription-rep 92.3 0.78 2.7E-05 48.1 11.1 102 255-356 626-734 (1151)
171 4ddu_A Reverse gyrase; topoiso 92.1 0.54 1.9E-05 49.0 9.7 101 256-356 96-205 (1104)
172 2qgz_A Helicase loader, putati 92.1 0.12 4.1E-06 45.5 4.2 23 77-99 152-174 (308)
173 4b4t_M 26S protease regulatory 92.0 0.098 3.4E-06 48.2 3.6 56 36-94 174-232 (434)
174 3io5_A Recombination and repai 92.0 0.095 3.3E-06 45.8 3.3 43 76-120 28-70 (333)
175 1w36_B RECB, exodeoxyribonucle 91.9 0.25 8.5E-06 52.1 6.9 54 79-132 18-80 (1180)
176 3eaq_A Heat resistant RNA depe 91.8 0.67 2.3E-05 38.1 8.1 70 109-188 32-105 (212)
177 1t5i_A C_terminal domain of A 91.7 1.1 3.8E-05 35.3 9.2 74 108-191 31-108 (172)
178 3ber_A Probable ATP-dependent 91.6 1.3 4.5E-05 37.3 10.1 75 278-356 110-195 (249)
179 2p6n_A ATP-dependent RNA helic 91.5 1.9 6.5E-05 34.6 10.5 72 109-190 55-130 (191)
180 2dr3_A UPF0273 protein PH0284; 91.2 0.14 4.9E-06 43.1 3.6 51 75-129 21-71 (247)
181 3vkg_A Dynein heavy chain, cyt 91.0 0.53 1.8E-05 54.0 8.5 76 47-123 873-952 (3245)
182 1ls1_A Signal recognition part 90.6 1.6 5.6E-05 37.9 9.9 22 76-97 97-118 (295)
183 2jgn_A DBX, DDX3, ATP-dependen 90.4 0.74 2.5E-05 36.9 7.0 89 87-189 29-121 (185)
184 3fe2_A Probable ATP-dependent 90.3 2.5 8.5E-05 35.3 10.6 74 279-356 102-185 (242)
185 3i5x_A ATP-dependent RNA helic 90.0 2.2 7.5E-05 40.9 11.2 90 95-191 326-419 (563)
186 2oap_1 GSPE-2, type II secreti 89.9 0.24 8.3E-06 46.8 4.2 37 65-102 247-284 (511)
187 1e9r_A Conjugal transfer prote 89.6 0.31 1E-05 45.3 4.6 44 76-122 52-95 (437)
188 1oyw_A RECQ helicase, ATP-depe 89.5 0.83 2.8E-05 43.4 7.6 80 256-337 43-123 (523)
189 3b85_A Phosphate starvation-in 89.2 0.44 1.5E-05 39.1 4.7 31 64-94 9-39 (208)
190 1u0j_A DNA replication protein 88.9 0.7 2.4E-05 39.3 5.9 44 49-95 73-122 (267)
191 2zts_A Putative uncharacterize 88.9 0.2 6.9E-06 42.3 2.6 52 76-130 29-80 (251)
192 2w0m_A SSO2452; RECA, SSPF, un 88.8 0.31 1.1E-05 40.5 3.7 40 74-116 20-59 (235)
193 2gxq_A Heat resistant RNA depe 88.8 3.3 0.00011 33.3 10.0 97 256-356 41-153 (207)
194 3sqw_A ATP-dependent RNA helic 88.8 3.1 0.0001 40.1 11.2 79 106-191 286-368 (579)
195 3bh0_A DNAB-like replicative h 88.8 0.38 1.3E-05 42.4 4.4 53 74-130 65-117 (315)
196 2i4i_A ATP-dependent RNA helic 88.7 2.8 9.7E-05 38.1 10.5 72 107-188 275-350 (417)
197 3u4q_B ATP-dependent helicase/ 88.6 0.24 8.3E-06 52.2 3.5 39 81-119 5-43 (1166)
198 2bjv_A PSP operon transcriptio 88.5 0.63 2.2E-05 39.7 5.5 19 76-94 28-46 (265)
199 1p9r_A General secretion pathw 88.5 0.58 2E-05 42.9 5.5 46 66-114 154-201 (418)
200 2r2a_A Uncharacterized protein 88.5 0.34 1.2E-05 39.4 3.6 23 79-101 7-29 (199)
201 3cf0_A Transitional endoplasmi 88.4 0.19 6.5E-06 44.0 2.2 54 39-95 11-67 (301)
202 2r8r_A Sensor protein; KDPD, P 88.3 0.41 1.4E-05 39.6 4.0 27 79-105 8-34 (228)
203 1jbk_A CLPB protein; beta barr 88.3 0.3 1E-05 39.0 3.2 19 77-95 43-61 (195)
204 4b4t_J 26S protease regulatory 88.2 0.31 1.1E-05 44.2 3.5 56 36-94 141-199 (405)
205 2cvh_A DNA repair and recombin 88.2 0.32 1.1E-05 40.1 3.4 37 74-116 17-53 (220)
206 4b4t_H 26S protease regulatory 88.2 0.27 9.4E-06 45.4 3.1 56 36-94 202-260 (467)
207 2qor_A Guanylate kinase; phosp 88.1 0.22 7.5E-06 40.7 2.2 23 73-95 8-30 (204)
208 2qmh_A HPR kinase/phosphorylas 88.0 0.27 9.1E-06 39.8 2.6 20 76-95 33-52 (205)
209 2v1x_A ATP-dependent DNA helic 87.8 0.94 3.2E-05 43.8 6.8 59 279-337 84-144 (591)
210 4b4t_L 26S protease subunit RP 87.7 0.23 7.8E-06 45.8 2.3 57 35-94 173-232 (437)
211 3vaa_A Shikimate kinase, SK; s 87.6 0.33 1.1E-05 39.4 3.0 21 75-95 23-43 (199)
212 2oxc_A Probable ATP-dependent 87.5 1.2 4E-05 37.0 6.5 94 257-355 65-174 (230)
213 2eyu_A Twitching motility prot 87.5 0.29 9.8E-06 41.8 2.7 21 74-94 22-42 (261)
214 2ius_A DNA translocase FTSK; n 87.3 0.61 2.1E-05 43.9 4.9 25 76-100 166-190 (512)
215 1tue_A Replication protein E1; 87.3 0.3 1E-05 39.7 2.5 27 68-94 45-75 (212)
216 2i1q_A DNA repair and recombin 87.2 0.65 2.2E-05 41.0 4.9 54 77-130 98-165 (322)
217 3a8t_A Adenylate isopentenyltr 87.1 0.31 1.1E-05 43.1 2.7 20 77-96 40-59 (339)
218 3nbx_X ATPase RAVA; AAA+ ATPas 87.1 0.3 1E-05 46.0 2.7 26 69-94 33-58 (500)
219 4ag6_A VIRB4 ATPase, type IV s 87.1 0.57 2E-05 42.7 4.6 41 76-119 34-74 (392)
220 2z43_A DNA repair and recombin 87.1 0.68 2.3E-05 40.9 5.0 54 77-130 107-164 (324)
221 1u94_A RECA protein, recombina 87.0 0.49 1.7E-05 42.4 4.0 39 76-117 62-100 (356)
222 2r44_A Uncharacterized protein 86.8 0.24 8.1E-06 44.0 1.8 22 73-94 42-63 (331)
223 1qhx_A CPT, protein (chloramph 86.7 0.31 1E-05 38.7 2.3 18 77-94 3-20 (178)
224 4b4t_I 26S protease regulatory 86.6 0.57 1.9E-05 42.8 4.2 57 35-94 174-233 (437)
225 4b4t_K 26S protease regulatory 86.6 0.31 1.1E-05 44.8 2.5 56 36-94 165-223 (428)
226 1xti_A Probable ATP-dependent 86.5 6 0.0002 35.5 11.2 98 256-356 48-161 (391)
227 3trf_A Shikimate kinase, SK; a 86.5 0.4 1.4E-05 38.3 2.9 20 77-96 5-24 (185)
228 1kgd_A CASK, peripheral plasma 86.5 0.41 1.4E-05 38.2 2.9 19 76-94 4-22 (180)
229 3i32_A Heat resistant RNA depe 86.4 1.7 5.9E-05 37.8 7.1 74 108-191 28-105 (300)
230 2l8b_A Protein TRAI, DNA helic 86.4 0.48 1.6E-05 37.5 3.1 58 64-123 36-95 (189)
231 3pey_A ATP-dependent RNA helic 86.4 3.8 0.00013 36.8 9.8 76 107-192 242-321 (395)
232 1zp6_A Hypothetical protein AT 86.4 0.24 8.1E-06 39.9 1.5 21 74-94 6-26 (191)
233 2zr9_A Protein RECA, recombina 86.4 0.5 1.7E-05 42.3 3.7 40 75-117 59-98 (349)
234 1vec_A ATP-dependent RNA helic 86.2 6.8 0.00023 31.4 10.4 96 256-355 43-154 (206)
235 3iij_A Coilin-interacting nucl 86.2 0.45 1.5E-05 37.8 3.0 21 75-95 9-29 (180)
236 4akg_A Glutathione S-transfera 86.0 1.2 4.1E-05 50.6 7.1 48 47-95 890-941 (2695)
237 2qz4_A Paraplegin; AAA+, SPG7, 85.9 0.43 1.5E-05 40.6 2.9 19 77-95 39-57 (262)
238 1lvg_A Guanylate kinase, GMP k 85.9 0.34 1.2E-05 39.4 2.2 19 76-94 3-21 (198)
239 3iuy_A Probable ATP-dependent 85.8 4.6 0.00016 33.2 9.3 75 278-356 93-176 (228)
240 3bgw_A DNAB-like replicative h 85.8 0.6 2E-05 43.3 4.0 51 74-128 194-244 (444)
241 3lw7_A Adenylate kinase relate 85.7 0.33 1.1E-05 38.2 2.0 17 79-95 3-19 (179)
242 2j41_A Guanylate kinase; GMP, 85.7 0.36 1.2E-05 39.3 2.3 20 75-94 4-23 (207)
243 1y63_A LMAJ004144AAA protein; 85.7 0.38 1.3E-05 38.5 2.3 19 76-94 9-27 (184)
244 2gza_A Type IV secretion syste 85.6 0.45 1.5E-05 42.8 3.0 21 74-94 172-192 (361)
245 3b9p_A CG5977-PA, isoform A; A 85.6 0.46 1.6E-05 41.3 3.0 19 77-95 54-72 (297)
246 3tau_A Guanylate kinase, GMP k 85.3 0.51 1.7E-05 38.6 3.0 19 76-94 7-25 (208)
247 1xwi_A SKD1 protein; VPS4B, AA 85.0 0.57 1.9E-05 41.4 3.4 54 39-95 8-63 (322)
248 3exa_A TRNA delta(2)-isopenten 85.0 0.46 1.6E-05 41.5 2.7 19 78-96 4-22 (322)
249 2x8a_A Nuclear valosin-contain 85.0 0.27 9.1E-06 42.4 1.1 54 38-94 5-61 (274)
250 1v5w_A DMC1, meiotic recombina 85.0 0.81 2.8E-05 40.8 4.4 42 77-118 122-166 (343)
251 1xp8_A RECA protein, recombina 84.9 0.64 2.2E-05 41.8 3.7 41 75-118 72-112 (366)
252 1lv7_A FTSH; alpha/beta domain 84.9 0.4 1.4E-05 40.7 2.3 18 77-94 45-62 (257)
253 1wrb_A DJVLGB; RNA helicase, D 84.9 13 0.00044 31.0 11.8 73 280-356 101-183 (253)
254 3hr8_A Protein RECA; alpha and 84.8 0.48 1.7E-05 42.4 2.8 41 76-119 60-100 (356)
255 2px0_A Flagellar biosynthesis 84.7 0.76 2.6E-05 40.0 4.0 22 77-98 105-126 (296)
256 1kag_A SKI, shikimate kinase I 84.7 0.45 1.6E-05 37.4 2.4 18 77-94 4-21 (173)
257 3foz_A TRNA delta(2)-isopenten 84.6 0.55 1.9E-05 40.9 3.0 19 79-97 12-30 (316)
258 3bor_A Human initiation factor 84.5 3.9 0.00013 34.0 8.2 98 256-356 70-182 (237)
259 3t15_A Ribulose bisphosphate c 84.5 0.53 1.8E-05 40.9 2.9 19 77-95 36-54 (293)
260 3tr0_A Guanylate kinase, GMP k 84.4 0.45 1.5E-05 38.7 2.3 20 75-94 5-24 (205)
261 3hws_A ATP-dependent CLP prote 84.4 0.61 2.1E-05 42.0 3.4 20 76-95 50-69 (363)
262 1ofh_A ATP-dependent HSL prote 84.4 0.55 1.9E-05 41.0 3.0 19 77-95 50-68 (310)
263 3uk6_A RUVB-like 2; hexameric 84.2 0.49 1.7E-05 42.6 2.6 20 77-96 70-89 (368)
264 2pt7_A CAG-ALFA; ATPase, prote 84.0 0.42 1.4E-05 42.4 2.0 20 74-93 168-187 (330)
265 1sky_E F1-ATPase, F1-ATP synth 84.0 8.3 0.00028 35.7 10.6 28 71-98 145-172 (473)
266 1ojl_A Transcriptional regulat 84.0 0.63 2.2E-05 40.7 3.2 19 76-94 24-42 (304)
267 4gp7_A Metallophosphoesterase; 84.0 0.38 1.3E-05 38.0 1.6 20 75-94 7-26 (171)
268 2iut_A DNA translocase FTSK; n 84.0 1.1 3.8E-05 42.6 4.9 41 77-117 214-255 (574)
269 2ewv_A Twitching motility prot 83.9 0.52 1.8E-05 42.6 2.6 21 74-94 133-153 (372)
270 1wp9_A ATP-dependent RNA helic 83.9 15 0.00052 33.8 13.0 96 256-356 26-134 (494)
271 3fht_A ATP-dependent RNA helic 83.9 3.2 0.00011 37.6 8.1 72 109-190 267-342 (412)
272 1ly1_A Polynucleotide kinase; 83.7 0.47 1.6E-05 37.6 2.0 16 79-94 4-19 (181)
273 1kht_A Adenylate kinase; phosp 83.6 0.51 1.7E-05 37.8 2.3 18 77-94 3-20 (192)
274 3kb2_A SPBC2 prophage-derived 83.6 0.49 1.7E-05 37.1 2.1 17 79-95 3-19 (173)
275 2ehv_A Hypothetical protein PH 83.5 0.83 2.9E-05 38.3 3.7 25 73-97 26-50 (251)
276 2ze6_A Isopentenyl transferase 83.5 0.59 2E-05 39.7 2.7 17 79-95 3-19 (253)
277 3cm0_A Adenylate kinase; ATP-b 83.4 0.39 1.3E-05 38.3 1.5 20 76-95 3-22 (186)
278 3jvv_A Twitching mobility prot 83.1 0.59 2E-05 41.9 2.6 19 76-94 122-140 (356)
279 1z6g_A Guanylate kinase; struc 82.8 0.61 2.1E-05 38.5 2.5 21 74-94 20-40 (218)
280 3ney_A 55 kDa erythrocyte memb 82.8 0.79 2.7E-05 37.1 3.0 19 76-94 18-36 (197)
281 2c9o_A RUVB-like 1; hexameric 82.8 0.73 2.5E-05 43.0 3.2 19 77-95 63-81 (456)
282 1knq_A Gluconate kinase; ALFA/ 82.7 0.52 1.8E-05 37.2 1.9 18 77-94 8-25 (175)
283 1s2m_A Putative ATP-dependent 82.6 4.6 0.00016 36.4 8.6 73 108-190 258-334 (400)
284 1yks_A Genome polyprotein [con 82.5 1.8 6.2E-05 40.0 5.8 68 109-187 178-245 (440)
285 4eun_A Thermoresistant glucoki 82.5 0.62 2.1E-05 37.8 2.4 19 76-94 28-46 (200)
286 3a00_A Guanylate kinase, GMP k 82.3 0.67 2.3E-05 37.1 2.4 17 78-94 2-18 (186)
287 1zuh_A Shikimate kinase; alpha 82.3 0.6 2.1E-05 36.5 2.1 18 78-95 8-25 (168)
288 1nlf_A Regulatory protein REPA 82.1 1.7 5.9E-05 37.3 5.2 28 72-99 25-52 (279)
289 1cr0_A DNA primase/helicase; R 82.1 1.1 3.6E-05 39.0 3.8 41 74-116 32-72 (296)
290 3crm_A TRNA delta(2)-isopenten 81.9 0.82 2.8E-05 40.2 3.0 19 79-97 7-25 (323)
291 1um8_A ATP-dependent CLP prote 81.9 0.88 3E-05 41.1 3.4 19 77-95 72-90 (376)
292 4fcw_A Chaperone protein CLPB; 81.7 1 3.5E-05 39.3 3.7 18 78-95 48-65 (311)
293 1vma_A Cell division protein F 81.7 1.2 4E-05 39.0 3.9 21 77-97 104-124 (306)
294 2c95_A Adenylate kinase 1; tra 81.7 0.64 2.2E-05 37.4 2.1 21 75-95 7-27 (196)
295 2v54_A DTMP kinase, thymidylat 81.7 0.64 2.2E-05 37.7 2.2 20 76-95 3-22 (204)
296 3d8b_A Fidgetin-like protein 1 81.5 0.93 3.2E-05 40.7 3.3 19 77-95 117-135 (357)
297 2rhm_A Putative kinase; P-loop 81.4 0.53 1.8E-05 37.8 1.5 19 77-95 5-23 (193)
298 2d7d_A Uvrabc system protein B 81.4 9 0.00031 37.5 10.5 77 108-194 445-525 (661)
299 3nwn_A Kinesin-like protein KI 81.4 0.81 2.8E-05 40.9 2.8 25 70-94 96-122 (359)
300 2r62_A Cell division protease 81.4 0.45 1.5E-05 40.7 1.2 19 77-95 44-62 (268)
301 2qt1_A Nicotinamide riboside k 81.3 0.6 2E-05 38.1 1.8 25 70-94 14-38 (207)
302 2j0s_A ATP-dependent RNA helic 81.2 5 0.00017 36.4 8.3 72 109-190 277-352 (410)
303 3d3q_A TRNA delta(2)-isopenten 81.0 0.92 3.1E-05 40.2 3.0 18 79-96 9-26 (340)
304 1s96_A Guanylate kinase, GMP k 81.0 0.75 2.6E-05 38.0 2.4 21 74-94 13-33 (219)
305 3umf_A Adenylate kinase; rossm 81.0 0.88 3E-05 37.5 2.7 22 74-95 26-47 (217)
306 2pl3_A Probable ATP-dependent 80.9 7.5 0.00026 32.1 8.7 74 278-356 96-180 (236)
307 1f9v_A Kinesin-like protein KA 80.7 1 3.5E-05 40.1 3.2 26 70-95 76-103 (347)
308 1znw_A Guanylate kinase, GMP k 80.7 0.79 2.7E-05 37.4 2.4 22 73-94 16-37 (207)
309 1bg2_A Kinesin; motor protein, 80.6 1 3.4E-05 39.7 3.1 23 72-94 71-95 (325)
310 3t0q_A AGR253WP; kinesin, alph 80.5 1.1 3.8E-05 39.9 3.4 26 70-95 77-104 (349)
311 1g8p_A Magnesium-chelatase 38 80.3 0.59 2E-05 41.7 1.6 19 77-95 45-63 (350)
312 1aky_A Adenylate kinase; ATP:A 80.3 0.81 2.8E-05 37.7 2.4 19 77-95 4-22 (220)
313 2yvu_A Probable adenylyl-sulfa 80.3 1.5 5.1E-05 34.9 3.9 20 76-95 12-31 (186)
314 3dc4_A Kinesin-like protein NO 80.2 0.94 3.2E-05 40.2 2.8 22 73-94 89-112 (344)
315 1ex7_A Guanylate kinase; subst 80.2 0.86 2.9E-05 36.5 2.4 17 78-94 2-18 (186)
316 3cmw_A Protein RECA, recombina 80.1 0.87 3E-05 49.2 3.0 90 77-196 1431-1523(1706)
317 1tev_A UMP-CMP kinase; ploop, 80.1 0.71 2.4E-05 37.0 1.9 18 77-94 3-20 (196)
318 1gvn_B Zeta; postsegregational 79.9 0.75 2.6E-05 39.8 2.1 18 77-94 33-50 (287)
319 2l82_A Designed protein OR32; 79.9 11 0.00038 26.3 7.5 51 282-332 5-55 (162)
320 3fb4_A Adenylate kinase; psych 79.9 0.76 2.6E-05 37.7 2.0 17 79-95 2-18 (216)
321 1c9k_A COBU, adenosylcobinamid 79.9 0.81 2.8E-05 36.4 2.1 44 80-130 2-45 (180)
322 1ixz_A ATP-dependent metallopr 79.8 1 3.6E-05 38.0 2.9 18 77-94 49-66 (254)
323 1zu4_A FTSY; GTPase, signal re 79.8 1.5 5E-05 38.7 3.9 36 77-115 105-140 (320)
324 1via_A Shikimate kinase; struc 79.6 0.86 2.9E-05 35.9 2.2 17 79-95 6-22 (175)
325 3t61_A Gluconokinase; PSI-biol 79.6 0.79 2.7E-05 37.1 2.0 18 77-94 18-35 (202)
326 1zd8_A GTP:AMP phosphotransfer 79.6 0.77 2.6E-05 38.1 2.0 19 76-94 6-24 (227)
327 3dl0_A Adenylate kinase; phosp 79.6 0.78 2.7E-05 37.6 2.0 17 79-95 2-18 (216)
328 4etp_A Kinesin-like protein KA 79.5 1.1 3.6E-05 40.9 3.0 26 70-95 132-159 (403)
329 2iyv_A Shikimate kinase, SK; t 79.4 0.94 3.2E-05 36.0 2.4 18 78-95 3-20 (184)
330 1q57_A DNA primase/helicase; d 79.3 1.1 3.7E-05 42.4 3.1 52 74-128 239-290 (503)
331 2zan_A Vacuolar protein sortin 79.3 1 3.6E-05 41.7 3.0 19 77-95 167-185 (444)
332 1goj_A Kinesin, kinesin heavy 79.3 1.2 4E-05 39.9 3.1 22 73-94 75-98 (355)
333 2vvg_A Kinesin-2; motor protei 79.3 1.2 4E-05 39.7 3.1 21 74-94 85-107 (350)
334 2zfi_A Kinesin-like protein KI 79.2 1.1 3.8E-05 40.2 3.0 24 71-94 82-107 (366)
335 2bdt_A BH3686; alpha-beta prot 79.1 0.66 2.3E-05 37.1 1.4 17 78-94 3-19 (189)
336 1v8k_A Kinesin-like protein KI 79.1 1.1 3.7E-05 40.8 2.9 23 73-95 149-173 (410)
337 3cmu_A Protein RECA, recombina 79.1 1.4 4.8E-05 48.4 4.2 40 76-118 1426-1465(2050)
338 4a14_A Kinesin, kinesin-like p 79.1 1.2 4.1E-05 39.6 3.1 23 72-94 77-101 (344)
339 2h58_A Kinesin-like protein KI 79.1 1.2 4.2E-05 39.3 3.1 25 70-94 72-98 (330)
340 1zak_A Adenylate kinase; ATP:A 78.9 0.85 2.9E-05 37.6 2.1 19 77-95 5-23 (222)
341 2y65_A Kinesin, kinesin heavy 78.9 1.2 4.1E-05 39.9 3.1 22 73-94 79-102 (365)
342 1qde_A EIF4A, translation init 78.8 2.7 9.1E-05 34.5 5.1 96 256-356 54-164 (224)
343 2j37_W Signal recognition part 78.8 7.8 0.00027 36.4 8.7 36 78-116 102-137 (504)
344 3lre_A Kinesin-like protein KI 78.8 1.2 4.2E-05 39.7 3.1 21 74-94 101-123 (355)
345 2cdn_A Adenylate kinase; phosp 78.8 0.98 3.4E-05 36.5 2.4 19 77-95 20-38 (201)
346 2bwj_A Adenylate kinase 5; pho 78.7 0.82 2.8E-05 36.8 1.9 19 76-94 11-29 (199)
347 3ice_A Transcription terminati 78.7 1.6 5.3E-05 39.4 3.7 28 68-95 162-192 (422)
348 3uie_A Adenylyl-sulfate kinase 78.7 1.1 3.8E-05 36.2 2.7 20 75-94 23-42 (200)
349 2vli_A Antibiotic resistance p 78.7 0.83 2.8E-05 36.2 1.8 19 77-95 5-23 (183)
350 3eph_A TRNA isopentenyltransfe 78.6 1.1 3.7E-05 40.6 2.7 18 79-96 4-21 (409)
351 3b6u_A Kinesin-like protein KI 78.6 1.1 3.9E-05 40.1 2.8 22 73-94 96-119 (372)
352 1e6c_A Shikimate kinase; phosp 78.6 0.98 3.3E-05 35.4 2.2 18 78-95 3-20 (173)
353 2plr_A DTMP kinase, probable t 78.5 0.87 3E-05 37.1 2.0 20 76-95 3-22 (213)
354 3lnc_A Guanylate kinase, GMP k 78.5 0.9 3.1E-05 37.8 2.1 21 74-94 24-44 (231)
355 3gbj_A KIF13B protein; kinesin 78.5 1.1 3.7E-05 40.1 2.6 25 70-94 84-110 (354)
356 2yjt_D ATP-dependent RNA helic 79.9 0.42 1.4E-05 37.7 0.0 73 108-190 30-106 (170)
357 3c8u_A Fructokinase; YP_612366 78.4 0.92 3.2E-05 37.0 2.1 19 76-94 21-39 (208)
358 3nwj_A ATSK2; P loop, shikimat 78.4 1.5 5.1E-05 37.0 3.4 19 76-94 47-65 (250)
359 1c4o_A DNA nucleotide excision 78.3 13 0.00046 36.3 10.6 75 109-193 440-518 (664)
360 2v3c_C SRP54, signal recogniti 78.3 1.6 5.4E-05 40.3 3.8 36 78-116 100-135 (432)
361 1pzn_A RAD51, DNA repair and r 78.3 1.5 5.2E-05 39.1 3.6 40 77-116 131-173 (349)
362 1q0u_A Bstdead; DEAD protein, 78.2 3.5 0.00012 33.7 5.7 95 257-355 45-158 (219)
363 3bfn_A Kinesin-like protein KI 78.1 1.2 4.2E-05 40.1 2.9 31 64-94 76-116 (388)
364 1m7g_A Adenylylsulfate kinase; 78.1 1.1 3.8E-05 36.6 2.5 29 65-94 14-42 (211)
365 1t5c_A CENP-E protein, centrom 78.0 1.2 4.2E-05 39.6 2.8 23 72-94 71-95 (349)
366 2pez_A Bifunctional 3'-phospho 78.0 0.94 3.2E-05 35.8 2.0 19 76-94 4-22 (179)
367 1nks_A Adenylate kinase; therm 78.0 0.85 2.9E-05 36.5 1.7 17 79-95 3-19 (194)
368 2db3_A ATP-dependent RNA helic 77.9 8.4 0.00029 35.4 8.7 69 110-188 302-374 (434)
369 1in4_A RUVB, holliday junction 77.9 1.2 4.2E-05 39.4 2.9 17 78-94 52-68 (334)
370 2wbe_C Bipolar kinesin KRP-130 77.9 1.1 3.9E-05 40.2 2.6 22 73-94 95-118 (373)
371 3sr0_A Adenylate kinase; phosp 77.8 1.4 4.7E-05 36.0 2.9 17 79-95 2-18 (206)
372 3cob_A Kinesin heavy chain-lik 77.8 1 3.4E-05 40.5 2.3 25 70-94 71-97 (369)
373 1x88_A Kinesin-like protein KI 77.8 1.2 4.1E-05 39.9 2.7 24 71-94 81-106 (359)
374 2v9p_A Replication protein E1; 77.7 1.4 4.6E-05 38.5 3.0 21 74-94 123-143 (305)
375 2heh_A KIF2C protein; kinesin, 77.7 1.3 4.6E-05 39.9 3.0 23 73-95 129-153 (387)
376 2nr8_A Kinesin-like protein KI 77.7 1.3 4.3E-05 39.7 2.8 25 70-94 95-121 (358)
377 1rj9_A FTSY, signal recognitio 77.7 2.2 7.5E-05 37.2 4.4 19 76-94 101-119 (304)
378 1gku_B Reverse gyrase, TOP-RG; 77.5 5.3 0.00018 41.6 7.8 96 258-355 76-183 (1054)
379 3cf2_A TER ATPase, transitiona 77.4 1.7 6E-05 43.3 4.0 56 38-94 472-528 (806)
380 3u06_A Protein claret segregat 77.4 1.3 4.4E-05 40.5 2.8 25 70-94 130-156 (412)
381 2v6i_A RNA helicase; membrane, 77.4 3.6 0.00012 37.9 6.0 67 109-186 172-238 (431)
382 2wwf_A Thymidilate kinase, put 77.3 1 3.5E-05 36.7 2.0 20 76-95 9-28 (212)
383 3tlx_A Adenylate kinase 2; str 77.1 1.1 3.8E-05 37.6 2.3 20 76-95 28-47 (243)
384 2vhj_A Ntpase P4, P4; non- hyd 77.1 1.2 4.1E-05 39.1 2.4 25 75-99 121-145 (331)
385 3b9q_A Chloroplast SRP recepto 77.0 1.9 6.4E-05 37.6 3.8 19 76-94 99-117 (302)
386 2owm_A Nckin3-434, related to 77.0 1.4 4.7E-05 40.7 3.0 21 74-94 132-154 (443)
387 1nn5_A Similar to deoxythymidy 76.9 1.1 3.7E-05 36.6 2.1 20 76-95 8-27 (215)
388 2rep_A Kinesin-like protein KI 76.8 1.5 5E-05 39.5 3.0 25 70-94 107-133 (376)
389 3bs4_A Uncharacterized protein 76.7 3 0.0001 35.4 4.7 52 76-131 20-71 (260)
390 4a74_A DNA repair and recombin 76.6 1.1 3.6E-05 37.1 2.0 24 74-97 22-45 (231)
391 1qf9_A UMP/CMP kinase, protein 76.6 0.99 3.4E-05 36.0 1.8 17 78-94 7-23 (194)
392 3pxg_A Negative regulator of g 76.6 1.9 6.7E-05 40.2 4.0 19 77-95 201-219 (468)
393 1iy2_A ATP-dependent metallopr 76.5 1.5 5E-05 37.7 2.9 54 38-94 35-90 (278)
394 1ak2_A Adenylate kinase isoenz 76.5 1.6 5.4E-05 36.4 3.0 20 76-95 15-34 (233)
395 2pt5_A Shikimate kinase, SK; a 76.5 1.1 3.9E-05 34.8 2.0 16 79-94 2-17 (168)
396 3be4_A Adenylate kinase; malar 76.2 1.2 4.1E-05 36.6 2.2 19 77-95 5-23 (217)
397 1ukz_A Uridylate kinase; trans 76.2 1.1 3.9E-05 36.2 2.0 17 78-94 16-32 (203)
398 1cke_A CK, MSSA, protein (cyti 76.1 1.2 4.2E-05 36.7 2.2 17 78-94 6-22 (227)
399 3ly5_A ATP-dependent RNA helic 76.0 11 0.00037 31.8 8.3 74 278-355 125-209 (262)
400 2p5t_B PEZT; postsegregational 76.0 0.95 3.2E-05 38.3 1.5 18 77-94 32-49 (253)
401 1e4v_A Adenylate kinase; trans 75.9 1 3.6E-05 36.9 1.7 17 79-95 2-18 (214)
402 1hv8_A Putative ATP-dependent 75.9 6.4 0.00022 34.8 7.2 73 108-190 238-314 (367)
403 2wv9_A Flavivirin protease NS2 75.8 3.9 0.00013 40.1 5.9 69 108-187 410-478 (673)
404 3a4m_A L-seryl-tRNA(SEC) kinas 75.7 1.1 3.9E-05 38.0 2.0 19 77-95 4-22 (260)
405 2jaq_A Deoxyguanosine kinase; 75.6 1.2 4.1E-05 36.0 2.0 17 79-95 2-18 (205)
406 2ce7_A Cell division protein F 75.5 1.2 4.2E-05 41.5 2.3 18 77-94 49-66 (476)
407 3p32_A Probable GTPase RV1496/ 75.4 23 0.00078 31.5 10.6 20 78-97 80-99 (355)
408 3fmo_B ATP-dependent RNA helic 75.4 3.7 0.00013 35.7 5.2 94 256-356 134-244 (300)
409 2pbr_A DTMP kinase, thymidylat 75.3 1.2 4.3E-05 35.5 2.0 17 79-95 2-18 (195)
410 3asz_A Uridine kinase; cytidin 75.3 1.1 3.8E-05 36.5 1.7 19 76-94 5-23 (211)
411 1jjv_A Dephospho-COA kinase; P 75.2 1.3 4.3E-05 36.0 2.0 16 79-94 4-19 (206)
412 1xjc_A MOBB protein homolog; s 75.0 2.9 9.8E-05 32.8 3.9 16 79-94 6-21 (169)
413 1j8m_F SRP54, signal recogniti 75.0 2.4 8.3E-05 36.8 3.9 37 77-116 98-134 (297)
414 3tif_A Uncharacterized ABC tra 75.0 1.3 4.4E-05 37.0 2.1 19 75-93 29-47 (235)
415 3f9v_A Minichromosome maintena 74.6 1.5 5.2E-05 42.3 2.7 16 79-94 329-344 (595)
416 2z0h_A DTMP kinase, thymidylat 74.5 1.3 4.6E-05 35.4 2.0 16 80-95 3-18 (197)
417 1ye8_A Protein THEP1, hypothet 74.4 1.8 6.3E-05 34.3 2.8 16 79-94 2-17 (178)
418 2jlq_A Serine protease subunit 74.4 4.5 0.00015 37.5 5.8 68 109-187 189-256 (451)
419 1f2t_A RAD50 ABC-ATPase; DNA d 74.4 1.4 4.9E-05 33.7 2.0 16 79-94 25-40 (149)
420 3lda_A DNA repair protein RAD5 74.3 2.5 8.5E-05 38.5 3.9 41 77-117 178-221 (400)
421 1ry6_A Internal kinesin; kines 74.2 1.8 6.1E-05 38.7 2.9 18 77-94 83-102 (360)
422 1g41_A Heat shock protein HSLU 74.1 1.8 6.3E-05 39.8 3.0 18 77-94 50-67 (444)
423 2xb4_A Adenylate kinase; ATP-b 73.9 1.4 4.8E-05 36.4 2.0 17 79-95 2-18 (223)
424 2xxa_A Signal recognition part 73.9 2.5 8.6E-05 38.9 3.9 37 78-116 101-137 (433)
425 2bbw_A Adenylate kinase 4, AK4 73.9 1.5 5.2E-05 36.8 2.3 18 77-94 27-44 (246)
426 2cbz_A Multidrug resistance-as 73.8 1.4 4.9E-05 36.8 2.1 21 74-94 28-48 (237)
427 3l0o_A Transcription terminati 73.6 2.2 7.6E-05 38.4 3.3 27 68-94 163-192 (427)
428 2if2_A Dephospho-COA kinase; a 73.5 1.4 4.6E-05 35.8 1.8 16 79-94 3-18 (204)
429 2i3b_A HCR-ntpase, human cance 73.5 2.2 7.6E-05 34.2 3.0 18 77-94 1-18 (189)
430 3cmu_A Protein RECA, recombina 73.4 2.4 8.3E-05 46.7 4.1 41 74-117 1078-1118(2050)
431 2og2_A Putative signal recogni 73.4 2.6 8.8E-05 37.7 3.7 19 76-94 156-174 (359)
432 3nh6_A ATP-binding cassette SU 72.9 1.9 6.5E-05 37.6 2.7 20 75-94 78-97 (306)
433 3e70_C DPA, signal recognition 72.8 2.9 9.8E-05 36.9 3.8 19 76-94 128-146 (328)
434 1htw_A HI0065; nucleotide-bind 72.7 1.5 5.2E-05 34.0 1.8 20 75-94 31-50 (158)
435 3cmw_A Protein RECA, recombina 72.5 2.6 8.8E-05 45.7 4.0 43 74-119 31-73 (1706)
436 3tqf_A HPR(Ser) kinase; transf 72.5 1.9 6.6E-05 33.9 2.3 21 76-96 15-35 (181)
437 1sgw_A Putative ABC transporte 72.5 1.7 5.7E-05 35.8 2.1 21 74-94 32-52 (214)
438 3k1j_A LON protease, ATP-depen 71.9 2.7 9.2E-05 40.7 3.8 22 73-94 56-77 (604)
439 4f4c_A Multidrug resistance pr 71.7 2.8 9.5E-05 44.8 4.1 135 74-220 441-610 (1321)
440 1fuu_A Yeast initiation factor 71.6 27 0.00093 31.1 10.4 96 256-356 61-171 (394)
441 3cf2_A TER ATPase, transitiona 71.4 2.3 7.9E-05 42.4 3.2 18 77-94 238-255 (806)
442 2pze_A Cystic fibrosis transme 71.2 1.8 6E-05 36.0 2.0 20 75-94 32-51 (229)
443 2grj_A Dephospho-COA kinase; T 71.2 1.8 6.3E-05 34.8 2.0 17 79-95 14-30 (192)
444 2whx_A Serine protease/ntpase/ 71.1 11 0.00038 36.5 7.9 68 109-187 356-423 (618)
445 2ghi_A Transport protein; mult 71.1 1.8 6.2E-05 36.8 2.1 21 74-94 43-63 (260)
446 3gfo_A Cobalt import ATP-bindi 71.1 1.8 6E-05 37.2 2.0 20 75-94 32-51 (275)
447 2ff7_A Alpha-hemolysin translo 70.9 1.8 6.1E-05 36.5 2.0 20 75-94 33-52 (247)
448 4e22_A Cytidylate kinase; P-lo 70.6 2.6 8.8E-05 35.6 3.0 19 76-94 26-44 (252)
449 3m6a_A ATP-dependent protease 70.5 2.4 8.3E-05 40.4 3.0 19 76-94 107-125 (543)
450 1uf9_A TT1252 protein; P-loop, 70.4 1.7 5.8E-05 35.0 1.7 17 78-94 9-25 (203)
451 2ffh_A Protein (FFH); SRP54, s 70.0 3.6 0.00012 37.7 4.0 37 76-115 97-133 (425)
452 4akg_A Glutathione S-transfera 70.0 1.8 6.1E-05 49.3 2.2 21 74-94 1264-1284(2695)
453 1mv5_A LMRA, multidrug resista 69.8 1.7 6E-05 36.4 1.7 21 74-94 25-45 (243)
454 4g1u_C Hemin import ATP-bindin 69.6 2 6.7E-05 36.7 2.0 20 75-94 35-54 (266)
455 2pcj_A ABC transporter, lipopr 69.5 1.8 6.2E-05 35.8 1.7 20 75-94 28-47 (224)
456 3pxi_A Negative regulator of g 69.5 3.4 0.00012 41.2 4.0 17 79-95 523-539 (758)
457 1vht_A Dephospho-COA kinase; s 69.5 2 6.9E-05 35.2 2.0 17 78-94 5-21 (218)
458 1g6h_A High-affinity branched- 69.4 2 6.9E-05 36.4 2.0 20 75-94 31-50 (257)
459 2dhr_A FTSH; AAA+ protein, hex 69.4 2.1 7.4E-05 40.2 2.4 18 77-94 64-81 (499)
460 3qf7_A RAD50; ABC-ATPase, ATPa 69.3 2 6.7E-05 38.7 2.0 16 79-94 25-40 (365)
461 1tf7_A KAIC; homohexamer, hexa 69.2 3.5 0.00012 39.1 3.9 42 74-118 278-319 (525)
462 1ji0_A ABC transporter; ATP bi 69.0 2.1 7.2E-05 35.9 2.0 20 75-94 30-49 (240)
463 2yhs_A FTSY, cell division pro 68.7 3.6 0.00012 38.4 3.7 18 77-94 293-310 (503)
464 3tqc_A Pantothenate kinase; bi 68.7 6.5 0.00022 34.5 5.2 16 79-94 94-109 (321)
465 2jeo_A Uridine-cytidine kinase 68.6 2 7E-05 36.0 1.9 19 76-94 24-42 (245)
466 1vpl_A ABC transporter, ATP-bi 68.4 2.2 7.6E-05 36.1 2.1 20 75-94 39-58 (256)
467 1b0u_A Histidine permease; ABC 68.2 2.2 7.7E-05 36.2 2.1 20 75-94 30-49 (262)
468 2qi9_C Vitamin B12 import ATP- 68.2 2.2 7.6E-05 36.0 2.0 20 75-94 24-43 (249)
469 2nq2_C Hypothetical ABC transp 68.0 2.3 7.8E-05 36.0 2.0 20 75-94 29-48 (253)
470 2ixe_A Antigen peptide transpo 68.0 2.3 7.8E-05 36.4 2.1 21 74-94 42-62 (271)
471 3pxi_A Negative regulator of g 67.8 3.2 0.00011 41.5 3.4 20 77-96 201-220 (758)
472 2yz2_A Putative ABC transporte 67.8 2.3 7.9E-05 36.2 2.1 20 75-94 31-50 (266)
473 3kta_A Chromosome segregation 67.8 2.9 9.9E-05 33.0 2.6 16 79-94 28-43 (182)
474 2d2e_A SUFC protein; ABC-ATPas 67.6 2.3 8E-05 35.8 2.0 20 75-94 27-46 (250)
475 2olj_A Amino acid ABC transpor 67.6 2.4 8.1E-05 36.1 2.1 20 75-94 48-67 (263)
476 1ltq_A Polynucleotide kinase; 67.4 2.3 7.8E-05 36.9 2.0 16 79-94 4-19 (301)
477 1np6_A Molybdopterin-guanine d 67.4 6.3 0.00022 31.0 4.4 17 78-94 7-23 (174)
478 1svm_A Large T antigen; AAA+ f 67.3 3.2 0.00011 37.4 2.9 19 76-94 168-186 (377)
479 1nij_A Hypothetical protein YJ 67.3 3.7 0.00013 36.0 3.3 16 79-94 6-21 (318)
480 2ck3_D ATP synthase subunit be 67.2 8.8 0.0003 35.6 5.8 32 69-100 142-176 (482)
481 4eaq_A DTMP kinase, thymidylat 67.1 2.4 8.2E-05 35.2 2.0 20 75-94 24-43 (229)
482 1uj2_A Uridine-cytidine kinase 66.9 2.5 8.4E-05 35.7 2.0 17 79-95 24-40 (252)
483 1rz3_A Hypothetical protein rb 66.8 2.2 7.5E-05 34.5 1.6 18 77-94 22-39 (201)
484 2ihy_A ABC transporter, ATP-bi 66.7 2.4 8.3E-05 36.4 2.0 20 75-94 45-64 (279)
485 2xau_A PRE-mRNA-splicing facto 66.5 21 0.00071 35.7 8.9 75 108-188 303-393 (773)
486 2oca_A DAR protein, ATP-depend 66.5 50 0.0017 30.8 11.3 74 110-192 349-426 (510)
487 3eiq_A Eukaryotic initiation f 65.8 33 0.0011 30.7 9.7 97 257-356 81-192 (414)
488 3auy_A DNA double-strand break 65.7 2.3 7.9E-05 38.3 1.7 17 78-94 26-42 (371)
489 1qvr_A CLPB protein; coiled co 65.7 4.3 0.00015 41.2 3.9 18 78-95 589-606 (854)
490 2zu0_C Probable ATP-dependent 65.6 3.4 0.00012 35.2 2.7 20 75-94 44-63 (267)
491 2f1r_A Molybdopterin-guanine d 65.5 1.8 6.3E-05 34.0 0.9 16 79-94 4-19 (171)
492 1ypw_A Transitional endoplasmi 65.5 2.9 9.9E-05 42.0 2.5 20 75-94 236-255 (806)
493 3tbk_A RIG-I helicase domain; 65.2 11 0.00039 35.5 6.7 74 279-356 52-136 (555)
494 2f6r_A COA synthase, bifunctio 65.1 2.5 8.4E-05 36.4 1.7 18 78-95 76-93 (281)
495 1odf_A YGR205W, hypothetical 3 64.9 2.8 9.5E-05 36.3 2.0 18 77-94 31-48 (290)
496 1gtv_A TMK, thymidylate kinase 64.6 1.4 4.8E-05 35.9 0.1 15 80-94 3-17 (214)
497 3aez_A Pantothenate kinase; tr 64.3 2.8 9.7E-05 36.7 2.0 20 75-94 88-107 (312)
498 3qks_A DNA double-strand break 64.3 3 0.0001 33.8 2.0 17 78-94 24-40 (203)
499 3ake_A Cytidylate kinase; CMP 64.2 3 0.0001 33.6 2.0 17 79-95 4-20 (208)
500 1yrb_A ATP(GTP)binding protein 64.1 6.5 0.00022 33.0 4.2 34 78-115 15-48 (262)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1e-61 Score=458.25 Aligned_cols=375 Identities=31% Similarity=0.504 Sum_probs=340.1
Q ss_pred hhhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCC-----Ccee
Q 015098 36 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL-----VQCQ 110 (413)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~-----~~~~ 110 (413)
..+..+|+++++++.+.+.+++.|+..|+|+|.++++.+++|+++++++|||||||++|+++++..+.... .+++
T Consensus 52 p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~ 131 (434)
T 2db3_A 52 PQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQ 131 (434)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCS
T ss_pred CCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCcc
Confidence 34677899999999999999999999999999999999999999999999999999999999998875432 3569
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEecc
Q 015098 111 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDE 190 (413)
Q Consensus 111 ~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE 190 (413)
+||++|+++|+.|+.+.++++....++.+..++|+............+++|+|+||++|.+++.+....+.+++++|+||
T Consensus 132 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDE 211 (434)
T 2db3_A 132 VVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDE 211 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEET
T ss_pred EEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEcc
Confidence 99999999999999999999988888889999999988777777778899999999999999998888889999999999
Q ss_pred chHHhccCcHHHHHHHHhhC--CCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHH
Q 015098 191 ADEMLSRGFKDQIYDIFQLL--PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLE 268 (413)
Q Consensus 191 ~h~~~~~~~~~~~~~~~~~~--~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (413)
||++.+.++...+..++..+ +...|++++|||++.........++.++..+..........++.+.+..... ..+..
T Consensus 212 ah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~ 290 (434)
T 2db3_A 212 ADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNK-YAKRS 290 (434)
T ss_dssp HHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCG-GGHHH
T ss_pred HhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCc-HHHHH
Confidence 99999999999999998875 5678999999999999999999999988888877766667778887777665 44777
Q ss_pred HHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCC
Q 015098 269 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348 (413)
Q Consensus 269 ~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 348 (413)
.+.+++..... ++||||++++.++.+++.|...+..+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++
T Consensus 291 ~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v 369 (434)
T 2db3_A 291 KLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNI 369 (434)
T ss_dssp HHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTC
T ss_pred HHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccC
Confidence 78787776554 49999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccCCCChhhHHHhhhhccCCCCcceEEEEecc-CcHHHHHHHHHHhccccccCCchhhhc
Q 015098 349 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTR-DDERMLFDIQKFYNVVIEELPSNVADL 412 (413)
Q Consensus 349 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
++||+++.|.+..+|+||+||+||.|+.|.+++++++ .+......+.+.++....++|++|.++
T Consensus 370 ~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 370 KHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp CEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred CEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 9999999999999999999999999999999999994 577889999999999999999998764
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=5.3e-62 Score=459.21 Aligned_cols=377 Identities=67% Similarity=1.069 Sum_probs=350.9
Q ss_pred hhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcC
Q 015098 37 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 116 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P 116 (413)
+...+|+++++++.+.+.+.++|+..|+|+|.++++.+.+|+++++.+|||+|||+++++++++.+.....+.++||++|
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 113 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 113 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECS
T ss_pred cCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcC
Confidence 45678999999999999999999999999999999999999999999999999999999999998876556669999999
Q ss_pred cHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhc
Q 015098 117 TRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS 196 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~ 196 (413)
+++|+.|+.+.+.++....+..+..+.|+.....+......+++|+|+||+.+.+.+........++++||+||||++.+
T Consensus 114 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~ 193 (410)
T 2j0s_A 114 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLN 193 (410)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTS
T ss_pred cHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHh
Confidence 99999999999999988888999999999888777777777889999999999999988888888899999999999999
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHh
Q 015098 197 RGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET 276 (413)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (413)
.++...+..+...++...|++++|||++.........++..+..+.........+.+.+.+........+.+.+..++..
T Consensus 194 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~ 273 (410)
T 2j0s_A 194 KGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT 273 (410)
T ss_dssp TTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHh
Confidence 99999999999999889999999999999888888888888887777767777788888888888777788999999988
Q ss_pred hcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccC
Q 015098 277 LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 277 ~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 356 (413)
...+++||||++++.++.+++.|...+..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.
T Consensus 274 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~ 353 (410)
T 2j0s_A 274 LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDL 353 (410)
T ss_dssp HTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSC
T ss_pred cCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCCchhhhcC
Q 015098 357 PTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 413 (413)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (413)
|++...|+||+||+||.|+.|.+++++++.+...++.++++++...+++|.++.+++
T Consensus 354 p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (410)
T 2j0s_A 354 PNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 410 (410)
T ss_dssp CSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCCTTTC
T ss_pred CCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccchhhcC
Confidence 999999999999999999999999999999999999999999999999999887764
No 3
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=3.2e-61 Score=454.63 Aligned_cols=383 Identities=73% Similarity=1.142 Sum_probs=335.9
Q ss_pred CcCCchhhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCcee
Q 015098 31 FFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ 110 (413)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~ 110 (413)
....+.+...+|+++++++.+.+.+.++|+..|+++|.++++.+.+|+++++.+|||+|||+++++++++.+.....+.+
T Consensus 31 ~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~ 110 (414)
T 3eiq_A 31 IESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQ 110 (414)
T ss_dssp CCCCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCC
T ss_pred cCCCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCcee
Confidence 34456677889999999999999999999999999999999999999999999999999999999999988876656679
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHH-cCCcEEEEccHHHHHHHHcCCCCCCcceEEEec
Q 015098 111 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQ-AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLD 189 (413)
Q Consensus 111 ~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~D 189 (413)
++|++|+++|+.|+.+.++++....+..+....|+........... ..++|+|+||+.|.+.+........++++||+|
T Consensus 111 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViD 190 (414)
T 3eiq_A 111 ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLD 190 (414)
T ss_dssp EEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEEC
T ss_pred EEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEE
Confidence 9999999999999999999998888888888888887766555444 678999999999999998888888889999999
Q ss_pred cchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHH
Q 015098 190 EADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLET 269 (413)
Q Consensus 190 E~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (413)
|||++.+.++...+..++..++...|++++|||++.........++..+..+...........+.+.+........+...
T Consensus 191 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (414)
T 3eiq_A 191 EADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDT 270 (414)
T ss_dssp SHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHH
T ss_pred CHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHH
Confidence 99999999999999999999999999999999999999888889999988888777777788888888888887889999
Q ss_pred HHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCc
Q 015098 270 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 349 (413)
Q Consensus 270 l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~ 349 (413)
+..++.....+++||||++++.++.+++.|...+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 271 l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~ 350 (414)
T 3eiq_A 271 LCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVS 350 (414)
T ss_dssp HHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCS
T ss_pred HHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCC
Confidence 99999988888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCCchhhhcC
Q 015098 350 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 413 (413)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (413)
+||+++.|++...|.||+||+||.|+.|.|++++++.+...++.++++++..++++|.++.+||
T Consensus 351 ~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 414 (414)
T 3eiq_A 351 LVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 414 (414)
T ss_dssp CEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC------
T ss_pred EEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999886
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.6e-59 Score=441.94 Aligned_cols=376 Identities=35% Similarity=0.508 Sum_probs=334.2
Q ss_pred hhhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCC---------
Q 015098 36 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL--------- 106 (413)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~--------- 106 (413)
..+..+|+++++++.+.+.|...|+..|+|+|.++++.+.+|+++++.+|||+|||++++++++..+....
T Consensus 11 p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 90 (417)
T 2i4i_A 11 PPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMK 90 (417)
T ss_dssp CCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccc
Confidence 45567899999999999999999999999999999999999999999999999999999999988765322
Q ss_pred ---------CceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCC
Q 015098 107 ---------VQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS 177 (413)
Q Consensus 107 ---------~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~ 177 (413)
..+++||++|+++|+.|+.+.++++....++.+..++|+............+++|+|+||++|.+.+....
T Consensus 91 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~ 170 (417)
T 2i4i_A 91 ENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK 170 (417)
T ss_dssp HCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS
T ss_pred cccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCC
Confidence 22579999999999999999999998888889999999988877777777789999999999999998888
Q ss_pred CCCCcceEEEeccchHHhccCcHHHHHHHHhhC--CC--CceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCe
Q 015098 178 LRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL--PA--KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGI 253 (413)
Q Consensus 178 ~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~--~~--~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (413)
..+.++++||+||||++.+.++...+..+.... +. ..+++++|||++.........++..+............+++
T Consensus 171 ~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 250 (417)
T 2i4i_A 171 IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENI 250 (417)
T ss_dssp BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSE
T ss_pred cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCc
Confidence 888899999999999999999999999988743 22 57899999999998888888898888877776666666777
Q ss_pred EEEEEEeccccchHHHHHHHHHhh-cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcE
Q 015098 254 KQFYVNVEKEEWKLETLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 332 (413)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 332 (413)
.+.+..... ..+...+.++++.. .++++||||++++.++.+++.|...+..+..+||+++..+|.++++.|++|+.+|
T Consensus 251 ~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 329 (417)
T 2i4i_A 251 TQKVVWVEE-SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 329 (417)
T ss_dssp EEEEEECCG-GGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCE
T ss_pred eEEEEEecc-HhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCE
Confidence 777766654 45778888888776 4678999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCCchhhhc
Q 015098 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 412 (413)
Q Consensus 333 li~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
||||+++++|+|+|++++||+++.|.+...|+||+||+||.|+.|.+++++++.+...++.+.++++....+++.++.++
T Consensus 330 lvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 409 (417)
T 2i4i_A 330 LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 409 (417)
T ss_dssp EEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHHHHH
T ss_pred EEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888765
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=7.1e-59 Score=436.51 Aligned_cols=373 Identities=41% Similarity=0.674 Sum_probs=336.0
Q ss_pred hccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCc
Q 015098 38 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 117 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~ 117 (413)
...+|+++++++.+.+.|.+.|+..|+|+|.++++.+.+++++++.+|||+|||++++++++..+.....+.+++|++|+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 98 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT 98 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCC
Confidence 35689999999999999999999999999999999999999999999999999999999999888765556699999999
Q ss_pred HHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhcc
Q 015098 118 RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR 197 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~ 197 (413)
++|+.|+.+.++++....+..+....|+.............++|+|+||+.+.+.+......+.++++||+||||++.+.
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~ 178 (400)
T 1s2m_A 99 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSR 178 (400)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSH
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhh
Confidence 99999999999999888888999999988877666666678899999999999988887778888999999999999888
Q ss_pred CcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhh
Q 015098 198 GFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL 277 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (413)
++...+..+...++...+++++|||++.........++..+....... .....++.+.+..... ..+...+..++...
T Consensus 179 ~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~k~~~l~~~~~~~ 256 (400)
T 1s2m_A 179 DFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYYAFVEE-RQKLHCLNTLFSKL 256 (400)
T ss_dssp HHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEEEECCG-GGHHHHHHHHHHHS
T ss_pred chHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEEEEech-hhHHHHHHHHHhhc
Confidence 888889999998888999999999999988888888888776554433 2444566666655544 45778888888888
Q ss_pred cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCC
Q 015098 278 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 357 (413)
Q Consensus 278 ~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~ 357 (413)
..+++||||++++.++.+++.|+..+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p 336 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFP 336 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCC
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCCchhhhc
Q 015098 358 TQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 412 (413)
Q Consensus 358 ~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
++...|.||+||+||.|+.|.|++++++.|...++.+++.++..++++|.++.+.
T Consensus 337 ~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 391 (400)
T 1s2m_A 337 KTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDKS 391 (400)
T ss_dssp SSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCGG
T ss_pred CCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccccccc
Confidence 9999999999999999999999999999999999999999999999999887664
No 6
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.3e-60 Score=447.58 Aligned_cols=387 Identities=64% Similarity=0.975 Sum_probs=194.3
Q ss_pred cCCCCCcCCchhhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC
Q 015098 26 TDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG 105 (413)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~ 105 (413)
.....+...+++...+|+++++++.+.+.+.++|+..|+|+|.++++.+.+|+++++.+|||+|||++++++++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~ 86 (394)
T 1fuu_A 7 IEESQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS 86 (394)
T ss_dssp ----CEEESSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT
T ss_pred ccccchhhhcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc
Confidence 34445556688888899999999999999999999999999999999999999999999999999999999999888776
Q ss_pred CCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceE
Q 015098 106 LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKM 185 (413)
Q Consensus 106 ~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~ 185 (413)
..++++||++|+++|+.|+.+.+.++....+..+..+.|+........... +++|+|+||+++.+.+........++++
T Consensus 87 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 165 (394)
T 1fuu_A 87 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKM 165 (394)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCE
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcE
Confidence 666799999999999999999999998888899999999887665544443 5799999999999999887778888999
Q ss_pred EEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccc
Q 015098 186 FVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEW 265 (413)
Q Consensus 186 iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (413)
||+||||++.+.++...+..+...+++..+++++|||+++........++..+..+.........+.+.+.+........
T Consensus 166 vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (394)
T 1fuu_A 166 FILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEY 245 (394)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC--------------------
T ss_pred EEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhh
Confidence 99999999999999999999999999999999999999998888888899988888777766666677777666666555
Q ss_pred hHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCC
Q 015098 266 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDV 345 (413)
Q Consensus 266 ~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~ 345 (413)
+...+..+++....+++||||++++.++.+++.|+..+..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+
T Consensus 246 ~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi 325 (394)
T 1fuu_A 246 KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDV 325 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCc
Confidence 77777788777777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCCchhhhcC
Q 015098 346 QQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 413 (413)
Q Consensus 346 ~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (413)
|++++||+++.|++...|.||+||+||.|+.|.|++++++.+...++.++++++..+++++.++.++|
T Consensus 326 ~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 393 (394)
T 1fuu_A 326 QQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 393 (394)
T ss_dssp --------------------------------------------------------------------
T ss_pred ccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999998887764
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.7e-57 Score=425.93 Aligned_cols=369 Identities=40% Similarity=0.661 Sum_probs=327.4
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHH
Q 015098 40 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 119 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 119 (413)
.+|+++++++.+.+.|.++|+..|+|+|.++++.+.+|+++++.+|||+|||++++++++..+.....+.++||++|+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 57999999999999999999999999999999999999999999999999999999999988776666669999999999
Q ss_pred HHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHHH-cCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhc-
Q 015098 120 LAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQ-AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS- 196 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~- 196 (413)
|+.|+.+.+.++.... +..+..+.|+........... ..++|+|+||+++...+......+.++++||+||||++.+
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~ 167 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 167 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSS
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhc
Confidence 9999999999987765 788889998888766555443 4579999999999999988888888999999999999877
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCc-ccccCeEEEEEEeccccchHHHHHHHHH
Q 015098 197 RGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE-LTLEGIKQFYVNVEKEEWKLETLCDLYE 275 (413)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (413)
.++...+..++...+...|++++|||+++........++..+..+...... .....+.+.+..... ..+...+..++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~ 246 (391)
T 1xti_A 168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD-NEKNRKLFDLLD 246 (391)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCG-GGHHHHHHHHHH
T ss_pred cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCc-hhHHHHHHHHHH
Confidence 366778888888888899999999999998888888888888777655433 344556666655443 557788888888
Q ss_pred hhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEcc
Q 015098 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355 (413)
Q Consensus 276 ~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 355 (413)
....+++||||++++.++.+++.|...+..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 247 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~ 326 (391)
T 1xti_A 247 VLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 326 (391)
T ss_dssp HSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESS
T ss_pred hcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHhhhhccCCCCcceEEEEeccC-cHHHHHHHHHHhccccccCCchh
Q 015098 356 LPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYNVVIEELPSNV 409 (413)
Q Consensus 356 ~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 409 (413)
.|++...|.||+||+||.|+.|.+++++++. +...+..+++.++..++++|.++
T Consensus 327 ~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (391)
T 1xti_A 327 MPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 381 (391)
T ss_dssp CCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCC
T ss_pred CCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCccc
Confidence 9999999999999999999999999999876 55778999999999999988654
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=7.7e-57 Score=422.10 Aligned_cols=366 Identities=41% Similarity=0.712 Sum_probs=328.8
Q ss_pred hccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcC--CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEc
Q 015098 38 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 115 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~ 115 (413)
...+|+++++++.+.+.+.+.|+..|+|+|.++++.+.++ +++++.+|||+|||++++++++..+.....++++||++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 82 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA 82 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence 4679999999999999999999999999999999999998 89999999999999999999998887666667999999
Q ss_pred CcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHh
Q 015098 116 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML 195 (413)
Q Consensus 116 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~ 195 (413)
|+++|+.|+.+.++++....+..+....++...... ...++|+|+||+.+.+.+......+.++++||+||||++.
T Consensus 83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~ 158 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNML 158 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhc
Confidence 999999999999999987777877777766442221 2367999999999999998888888899999999999988
Q ss_pred c-cCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHH
Q 015098 196 S-RGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY 274 (413)
Q Consensus 196 ~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (413)
+ .++...+..+...++...|++++|||+++........++..+..............+.+.+........+...+..++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (395)
T 3pey_A 159 DQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELY 238 (395)
T ss_dssp HSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHH
Confidence 7 677888888999998899999999999998888888998888888777777777888888888877777888888888
Q ss_pred HhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEc
Q 015098 275 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 354 (413)
Q Consensus 275 ~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~ 354 (413)
.....+++||||++++.++.+++.|+..+..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 239 ~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~ 318 (395)
T 3pey_A 239 GLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNY 318 (395)
T ss_dssp TTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEES
T ss_pred HhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEc
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC------ChhhHHHhhhhccCCCCcceEEEEeccC-cHHHHHHHHHHhc-cccccCCc
Q 015098 355 DLPT------QPENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYN-VVIEELPS 407 (413)
Q Consensus 355 ~~~~------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~ 407 (413)
+.|+ +...|+||+||+||.|+.|.+++++... +...+..++++++ ..+..++.
T Consensus 319 ~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 379 (395)
T 3pey_A 319 DLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPT 379 (395)
T ss_dssp SCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCS
T ss_pred CCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCCh
Confidence 9998 9999999999999999999999999874 5577788888888 67666664
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.4e-56 Score=422.74 Aligned_cols=369 Identities=40% Similarity=0.685 Sum_probs=327.9
Q ss_pred hccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcC--CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEc
Q 015098 38 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 115 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~ 115 (413)
...+|+++++++.+.+.+.+.|+..|+++|.++++.+.++ +++++.+|||+|||++++++++..+.....+++++|++
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 102 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 102 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEEC
Confidence 4678999999999999999999999999999999999987 99999999999999999999999888777777999999
Q ss_pred CcHHHHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHc-CCCCCCcceEEEeccchH
Q 015098 116 PTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADE 193 (413)
Q Consensus 116 P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~-~~~~~~~~~~iV~DE~h~ 193 (413)
|+++|+.|+.+.++++.... +..+....++....... ...++|+|+||+.+.+.+.. ....+.++++||+||||+
T Consensus 103 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~ 179 (412)
T 3fht_A 103 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 179 (412)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHH
Confidence 99999999999999987654 56677666665533221 24579999999999988865 556678899999999999
Q ss_pred Hhc-cCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHH
Q 015098 194 MLS-RGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCD 272 (413)
Q Consensus 194 ~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 272 (413)
+.+ ..+...+..+...++...|++++|||+++........++..+..+...........+.+.+........+...+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 259 (412)
T 3fht_A 180 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCN 259 (412)
T ss_dssp HHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHH
T ss_pred HhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHH
Confidence 886 6778888889999998999999999999999899999999988888777777778888888888877788899999
Q ss_pred HHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEE
Q 015098 273 LYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 (413)
Q Consensus 273 ~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi 352 (413)
++.....+++||||++++.++.+++.|...+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 260 ~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi 339 (412)
T 3fht_A 260 LYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI 339 (412)
T ss_dssp HHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEE
T ss_pred HHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEE
Confidence 99888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCC------ChhhHHHhhhhccCCCCcceEEEEeccCc-HHHHHHHHHHhccccccCCchh
Q 015098 353 NYDLPT------QPENYLHRIGRSGRFGRKGVAINFVTRDD-ERMLFDIQKFYNVVIEELPSNV 409 (413)
Q Consensus 353 ~~~~~~------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 409 (413)
+++.|+ +...|+||+||+||.|+.|.++++++..+ ...+..+++.++..+++++.+-
T Consensus 340 ~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 403 (412)
T 3fht_A 340 NFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDD 403 (412)
T ss_dssp ESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC----
T ss_pred EECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCcc
Confidence 999994 66899999999999999999999998764 7889999999999998887543
No 10
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-55 Score=410.28 Aligned_cols=361 Identities=36% Similarity=0.625 Sum_probs=320.0
Q ss_pred hccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcC-CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcC
Q 015098 38 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 116 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P 116 (413)
...+|+++++++.+.+.|++.|+..|+|+|.++++.+.++ +++++.+|||+|||++++++++..+... .+.+++|++|
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P 82 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTP 82 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECS
T ss_pred ccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcC
Confidence 3567999999999999999999999999999999999988 7999999999999999999988876543 3459999999
Q ss_pred cHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhc
Q 015098 117 TRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS 196 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~ 196 (413)
+++|+.|+.+.+.++....+..+....|+........... .++|+|+||+.+.+.+......+.++++||+||||++.+
T Consensus 83 ~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~ 161 (367)
T 1hv8_A 83 TRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLN 161 (367)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhh
Confidence 9999999999999998877888888888887666554444 689999999999999988878888899999999999999
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHh
Q 015098 197 RGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET 276 (413)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (413)
.++...+..++...+...+++++|||++.........++..+........ ..+.+.+..... ..+.+.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~l~~~l~- 235 (367)
T 1hv8_A 162 MGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN----ANIEQSYVEVNE-NERFEALCRLLK- 235 (367)
T ss_dssp TTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS----SSSEEEEEECCG-GGHHHHHHHHHC-
T ss_pred hchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC----CCceEEEEEeCh-HHHHHHHHHHHh-
Confidence 99999999999999889999999999999888888888776655443322 345555554443 457777777776
Q ss_pred hcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccC
Q 015098 277 LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 277 ~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 356 (413)
..++++||||++++.++.+++.|+..+..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.
T Consensus 236 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~ 315 (367)
T 1hv8_A 236 NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHL 315 (367)
T ss_dssp STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSC
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCC
Q 015098 357 PTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 406 (413)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (413)
|++...|.||+||+||.|+.|.+++++++.+...+..+++.++..+++++
T Consensus 316 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 316 PQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp CSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred CCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 99999999999999999999999999999999999999999999988764
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.7e-56 Score=427.87 Aligned_cols=367 Identities=40% Similarity=0.692 Sum_probs=175.3
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcC--CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcC
Q 015098 39 YDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 116 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P 116 (413)
..+|++++|++.+.+.+.++|+..|+|+|.++++.++++ +++++.+|||||||++|+++++..+.....++++||++|
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 170 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 170 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECS
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeC
Confidence 458999999999999999999999999999999999987 899999999999999999999999887777779999999
Q ss_pred cHHHHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHc-CCCCCCcceEEEeccchHH
Q 015098 117 TRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEM 194 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~-~~~~~~~~~~iV~DE~h~~ 194 (413)
+++|+.|+.+.++++.... +..+....++....... ...++|+|+||+.+.+++.+ ....+.++++||+||+|++
T Consensus 171 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~ 247 (479)
T 3fmp_B 171 TYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 247 (479)
T ss_dssp SHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHH
T ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHH
Confidence 9999999999999887653 45666666554432221 23568999999999988865 4556788999999999998
Q ss_pred hc-cCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHH
Q 015098 195 LS-RGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDL 273 (413)
Q Consensus 195 ~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (413)
.+ .++...+..+...++...|++++|||++.........++..+..+...........+.+.+........+...+..+
T Consensus 248 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 327 (479)
T 3fmp_B 248 IATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNL 327 (479)
T ss_dssp HTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------------
T ss_pred hhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHH
Confidence 86 67888888899999889999999999999998999999998888887777667777777777777666778888888
Q ss_pred HHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEE
Q 015098 274 YETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 353 (413)
Q Consensus 274 ~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~ 353 (413)
+.....+++||||++++.++.+++.|...+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 328 ~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~ 407 (479)
T 3fmp_B 328 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 407 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE
Confidence 87777789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC------ChhhHHHhhhhccCCCCcceEEEEeccCc-HHHHHHHHHHhccccccCCch
Q 015098 354 YDLPT------QPENYLHRIGRSGRFGRKGVAINFVTRDD-ERMLFDIQKFYNVVIEELPSN 408 (413)
Q Consensus 354 ~~~~~------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 408 (413)
++.|. +...|+||+||+||.|+.|.+++++.+.+ ...+..++++++..+++++.+
T Consensus 408 ~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 469 (479)
T 3fmp_B 408 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTD 469 (479)
T ss_dssp --------------------------------------------------------------
T ss_pred ecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCc
Confidence 99994 66899999999999999999999998765 788899999999988887754
No 12
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.7e-53 Score=388.52 Aligned_cols=336 Identities=31% Similarity=0.539 Sum_probs=290.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHH
Q 015098 47 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEK 126 (413)
Q Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~ 126 (413)
+++.+.+.++++|+..|+|+|.++++.+.+++++++.+|||+|||++++++++.. +.+++|++|+++|+.|+.+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999999888763 3489999999999999999
Q ss_pred HHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHH
Q 015098 127 VMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDI 206 (413)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~ 206 (413)
.++++....+..+..++|+........... .++|+|+||+.|.+.+......+.++++||+||||++.+.++...+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~ 153 (337)
T 2z0m_A 75 HIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKII 153 (337)
T ss_dssp HHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred HHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHH
Confidence 999998888888999998887665554443 4899999999999988887777888999999999999999999999999
Q ss_pred HhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhhcccceEEEE
Q 015098 207 FQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFV 286 (413)
Q Consensus 207 ~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~ 286 (413)
+...+...+++++|||+++........++..+..+... ....++.+.+....... ......+....++++||||
T Consensus 154 ~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~lvf~ 227 (337)
T 2z0m_A 154 LAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW---RSKVQALRENKDKGVIVFV 227 (337)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS---HHHHHHHHTCCCSSEEEEC
T ss_pred HhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH---HHHHHHHHhCCCCcEEEEE
Confidence 99999899999999999999888888888877655332 33445555555544422 2223555666778999999
Q ss_pred ccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHh
Q 015098 287 NTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHR 366 (413)
Q Consensus 287 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~ 366 (413)
++++.++.+++.|. .+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|++...|.||
T Consensus 228 ~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~ 303 (337)
T 2z0m_A 228 RTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHR 303 (337)
T ss_dssp SCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHH
T ss_pred cCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHh
Confidence 99999999998885 68899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCcceEEEEeccCcHHHHHHHHHHhcc
Q 015098 367 IGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNV 400 (413)
Q Consensus 367 ~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (413)
+||+||.|+.|.+++++. .+...++.+++.++.
T Consensus 304 ~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 304 IGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp HTTBCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred cCccccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 999999999999999999 888888888877654
No 13
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2.5e-53 Score=415.66 Aligned_cols=359 Identities=30% Similarity=0.470 Sum_probs=299.0
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhhhhhhh--cCCcEEEeCCCCCcchHHhHHHHHHccccCC----CceeEEEEcCcHH
Q 015098 46 GLQENLLRGIYAYGFEKPSAIQQRGIVPFC--KGLDVIQQAQSGTGKTATFCSGILQQLDYGL----VQCQALVLAPTRE 119 (413)
Q Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~--~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~liv~P~~~ 119 (413)
.+++.+.+++..+|+..|+|+|.++++.++ .++++++.+|||+|||++|+++++..+.... .++++||++|+++
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 27 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHH
Confidence 399999999999999999999999999999 6889999999999999999999998876542 2458999999999
Q ss_pred HHHHHHHHHHHhhcc----cCcEEEEEEcCcchHHHHHHH-HcCCcEEEEccHHHHHHHHcC-CCCCCcceEEEeccchH
Q 015098 120 LAQQIEKVMRALGDY----LGVKVHACVGGTSVREDQRIL-QAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEADE 193 (413)
Q Consensus 120 l~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~iii~T~~~l~~~~~~~-~~~~~~~~~iV~DE~h~ 193 (413)
|+.|+.+.+.++... ....+..+.|+.........+ ..+++|+|+||++|.+++... ...+..+++||+||||+
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH
Confidence 999999999987532 345677778887766555444 457899999999998887653 33567789999999999
Q ss_pred HhccCcHHHHHHHHhhCC-------CCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecC----CcccccCeEEEEEEecc
Q 015098 194 MLSRGFKDQIYDIFQLLP-------AKVQVGVFSATMPPEALEITRKFMNKPVRILVKR----DELTLEGIKQFYVNVEK 262 (413)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~-------~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 262 (413)
+.+.++...+..+...++ ...|++++|||+++........++..+....... .......+.+.+.....
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 999998888887776543 3679999999999988888888888876655433 22233455555555544
Q ss_pred ccch----HHHHHHHHHh-hcccceEEEEccHHHHHHHHHHhhhC---CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 015098 263 EEWK----LETLCDLYET-LAITQSVIFVNTRRKVDWLTDKMRSR---DHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 334 (413)
Q Consensus 263 ~~~~----~~~l~~~~~~-~~~~~~lif~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli 334 (413)
.... ...+...+.. ..+.++||||+++..++.+++.|... +..+..+||++++.+|..+++.|++|+.+|||
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLV 346 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEE
Confidence 3222 2333333333 45679999999999999999999876 88999999999999999999999999999999
Q ss_pred EcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhcccccc
Q 015098 335 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 404 (413)
Q Consensus 335 ~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (413)
||+++++|+|+|++++||+++.|.++..|+||+||+||.|+.|.|++++.+.+...++.+++..+..+..
T Consensus 347 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~ 416 (579)
T 3sqw_A 347 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAK 416 (579)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCE
T ss_pred EcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999987766543
No 14
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=3.4e-53 Score=414.63 Aligned_cols=358 Identities=30% Similarity=0.471 Sum_probs=297.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhhhhhh--cCCcEEEeCCCCCcchHHhHHHHHHccccCC----CceeEEEEcCcHHH
Q 015098 47 LQENLLRGIYAYGFEKPSAIQQRGIVPFC--KGLDVIQQAQSGTGKTATFCSGILQQLDYGL----VQCQALVLAPTREL 120 (413)
Q Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~--~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~liv~P~~~l 120 (413)
+++.+.+.+..+|+..|+|+|.++++.++ .++++++.+|||||||++|++++++.+.... .++++||++|+++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 99999999999999999999999999999 6789999999999999999999998886543 23589999999999
Q ss_pred HHHHHHHHHHhhcc----cCcEEEEEEcCcchHHHHHHH-HcCCcEEEEccHHHHHHHHcC-CCCCCcceEEEeccchHH
Q 015098 121 AQQIEKVMRALGDY----LGVKVHACVGGTSVREDQRIL-QAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEADEM 194 (413)
Q Consensus 121 ~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~iii~T~~~l~~~~~~~-~~~~~~~~~iV~DE~h~~ 194 (413)
+.|+.+.++++... ....+..+.|+.......... ..+++|+|+||++|.+++.+. ...+..+++||+||||++
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 99999999987432 245677778887766554443 457899999999998887653 234667899999999999
Q ss_pred hccCcHHHHHHHHhhC-------CCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCC----cccccCeEEEEEEeccc
Q 015098 195 LSRGFKDQIYDIFQLL-------PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRD----ELTLEGIKQFYVNVEKE 263 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~-------~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 263 (413)
.+.++...+..+...+ ....|++++|||+++........++..+........ ......+.+.+......
T Consensus 239 ~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (563)
T 3i5x_A 239 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318 (563)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred hccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchh
Confidence 9999888887776554 237799999999999888888888887766554322 22334555555555443
Q ss_pred cchH----HHHHHHHHh-hcccceEEEEccHHHHHHHHHHhhhC---CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 015098 264 EWKL----ETLCDLYET-LAITQSVIFVNTRRKVDWLTDKMRSR---DHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 335 (413)
Q Consensus 264 ~~~~----~~l~~~~~~-~~~~~~lif~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~ 335 (413)
.... ..+...+.. ..++++||||++++.++.+++.|... +..+..+||++++.+|..+++.|++|+.+||||
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLva 398 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 398 (563)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 3222 223333332 45679999999999999999999876 889999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhcccccc
Q 015098 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 404 (413)
Q Consensus 336 t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (413)
|+++++|+|+|++++||+++.|.++..|+||+||+||.|+.|.+++++.+.+...++.+++..+..+++
T Consensus 399 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~ 467 (563)
T 3i5x_A 399 TDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAK 467 (563)
T ss_dssp CGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCE
T ss_pred cchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999887765543
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.8e-55 Score=418.15 Aligned_cols=367 Identities=38% Similarity=0.641 Sum_probs=272.7
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcC--CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcC
Q 015098 39 YDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 116 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P 116 (413)
...|...++++.+.+.+.+.|+..|+++|.++++.+.++ +++++.+|||||||++++++++..+.....++++||++|
T Consensus 118 l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P 197 (508)
T 3fho_A 118 XXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAP 197 (508)
T ss_dssp ---------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECS
T ss_pred cccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEEC
Confidence 334566788999999999999999999999999999998 999999999999999999999998877766779999999
Q ss_pred cHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhc
Q 015098 117 TRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS 196 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~ 196 (413)
+++|+.|+.+.++++....+..+....++..... ....++|+|+||+.+.+.+......+.++++||+||||++.+
T Consensus 198 ~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~ 273 (508)
T 3fho_A 198 SRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLD 273 (508)
T ss_dssp CHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcc
Confidence 9999999999999987766665555444433221 234689999999999999988888888999999999999887
Q ss_pred -cCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHH
Q 015098 197 -RGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYE 275 (413)
Q Consensus 197 -~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (413)
.++...+..+...++...|++++|||+++........+...+..+...........+.+.+........+...+..++.
T Consensus 274 ~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~ 353 (508)
T 3fho_A 274 QQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYG 353 (508)
T ss_dssp C--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHH
Confidence 5788889999999998999999999999888888888988888777776666667777777777666778888888888
Q ss_pred hhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEcc
Q 015098 276 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355 (413)
Q Consensus 276 ~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 355 (413)
....+++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 354 ~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~ 433 (508)
T 3fho_A 354 LLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYD 433 (508)
T ss_dssp ---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC--
T ss_pred hcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEEC
Confidence 87888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC------CChhhHHHhhhhccCCCCcceEEEEecc-CcHHHHHHHHHHhccccccCCchh
Q 015098 356 LP------TQPENYLHRIGRSGRFGRKGVAINFVTR-DDERMLFDIQKFYNVVIEELPSNV 409 (413)
Q Consensus 356 ~~------~s~~~~~Q~~GR~~R~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 409 (413)
.| .++..|+||+||+||.|+.|.+++++.+ .+...+..++++++..+++++.+-
T Consensus 434 ~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~ 494 (508)
T 3fho_A 434 MPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDD 494 (508)
T ss_dssp --CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC------
T ss_pred CCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCcc
Confidence 99 7899999999999999999999999985 567888999999999999888543
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=6.8e-51 Score=394.81 Aligned_cols=346 Identities=16% Similarity=0.213 Sum_probs=275.4
Q ss_pred hhhccCcc--cCCCCHHHHHHHHH-CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEE
Q 015098 36 DEVYDSFD--AMGLQENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQAL 112 (413)
Q Consensus 36 ~~~~~~~~--~~~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~l 112 (413)
+.....|. ++++++.+.+.|+. +|+..|+|+|.++++.+++|+++++.+|||+|||++|+++++.. .+++|
T Consensus 15 ~~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------~g~~l 88 (591)
T 2v1x_A 15 DSSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------DGFTL 88 (591)
T ss_dssp -CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------SSEEE
T ss_pred CcchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------CCcEE
Confidence 33334443 47889999999998 79999999999999999999999999999999999999998753 23999
Q ss_pred EEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHH------HcCCcEEEEccHHHH------HHHHcCCCCC
Q 015098 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL------QAGVHVVVGTPGRVF------DMLRRQSLRP 180 (413)
Q Consensus 113 iv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~iii~T~~~l~------~~~~~~~~~~ 180 (413)
|++|+++|+.|+.+.+.++ ++.+..+.++.......... ....+|+|+||++|. +.+.. ....
T Consensus 89 VisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~ 163 (591)
T 2v1x_A 89 VICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEA 163 (591)
T ss_dssp EECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHT
T ss_pred EEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhc
Confidence 9999999999999999986 67788888887755443322 357899999999874 22222 2335
Q ss_pred CcceEEEeccchHHhccC--cHHHHH---HHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEE
Q 015098 181 DYIKMFVLDEADEMLSRG--FKDQIY---DIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQ 255 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~--~~~~~~---~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (413)
.++++||+||||++.+++ |...+. .+...+ +..+++++|||+++.....+..++..+....... ....+++..
T Consensus 164 ~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~ 241 (591)
T 2v1x_A 164 RRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQF-PNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYY 241 (591)
T ss_dssp TCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHC-TTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEE
T ss_pred cCCcEEEEECcccccccccccHHHHHHHHHHHHhC-CCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEE
Confidence 668999999999988765 333322 333444 4688999999999988777777766543222222 233345544
Q ss_pred EEEEecc-ccchHHHHHHHHHh-hcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 015098 256 FYVNVEK-EEWKLETLCDLYET-LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333 (413)
Q Consensus 256 ~~~~~~~-~~~~~~~l~~~~~~-~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 333 (413)
.+..... .......+.+++.. ..++++||||++++.++.+++.|...|..+..+||+++..+|..+++.|.+|+.+||
T Consensus 242 ~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~Vl 321 (591)
T 2v1x_A 242 EVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVV 321 (591)
T ss_dssp EEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEE
T ss_pred EEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEE
Confidence 4333322 22345666666653 366799999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHH
Q 015098 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 394 (413)
Q Consensus 334 i~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~ 394 (413)
|||+++++|+|+|++++||+++.|.|...|.|++||+||.|++|.|++++...|...+..+
T Consensus 322 VAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 322 VATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp EECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred EEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998876655443
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.4e-50 Score=387.37 Aligned_cols=339 Identities=18% Similarity=0.267 Sum_probs=275.3
Q ss_pred cCcccCCCCHHHHHHHHH-CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcH
Q 015098 40 DSFDAMGLQENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR 118 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~ 118 (413)
.+|+++++++.+.+.|++ +|+..|+|+|.++++.+++|+++++.+|||+|||++|+++++.. .+.+||++|++
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~ 75 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLI 75 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChH
Confidence 579999999999999998 89999999999999999999999999999999999999988753 23899999999
Q ss_pred HHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHH----HHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHH
Q 015098 119 ELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ----RILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM 194 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~ 194 (413)
+|+.|+.+.+.++ ++.+..+.++....... .......+|+++||+++........+...++++||+||||++
T Consensus 76 aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i 151 (523)
T 1oyw_A 76 SLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCI 151 (523)
T ss_dssp HHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGG
T ss_pred HHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcccc
Confidence 9999999999875 67777888776654432 233457899999999985221111223466899999999999
Q ss_pred hccC--cHHH---HHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcC--CCEEEEecCCcccccCeEEEEEEeccccchH
Q 015098 195 LSRG--FKDQ---IYDIFQLLPAKVQVGVFSATMPPEALEITRKFMN--KPVRILVKRDELTLEGIKQFYVNVEKEEWKL 267 (413)
Q Consensus 195 ~~~~--~~~~---~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (413)
.+++ +... +..+...++ +.+++++|||+++.....+...++ .+..... ....+++...... ...+.
T Consensus 152 ~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~~l~~~v~~---~~~~~ 224 (523)
T 1oyw_A 152 SQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQIS---SFDRPNIRYMLME---KFKPL 224 (523)
T ss_dssp CTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC---CCCCTTEEEEEEE---CSSHH
T ss_pred CcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC---CCCCCceEEEEEe---CCCHH
Confidence 8765 3333 334455554 578999999999876655444443 3333222 2223444433332 24467
Q ss_pred HHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCC
Q 015098 268 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ 347 (413)
Q Consensus 268 ~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~ 347 (413)
+.+..++....++++||||++++.++.+++.|+..|..+..+||+++..+|.++++.|.+|+.+|||||+++++|+|+|+
T Consensus 225 ~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~ 304 (523)
T 1oyw_A 225 DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPN 304 (523)
T ss_dssp HHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTT
T ss_pred HHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccC
Confidence 77888888777789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHH
Q 015098 348 VSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 395 (413)
Q Consensus 348 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~ 395 (413)
+++||+++.|.|...|.|++||+||.|++|.+++++++.|....+.+.
T Consensus 305 v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~ 352 (523)
T 1oyw_A 305 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (523)
T ss_dssp CCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred ccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988776655443
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=5.2e-49 Score=370.67 Aligned_cols=325 Identities=21% Similarity=0.257 Sum_probs=259.4
Q ss_pred HHHHHHH-CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHH
Q 015098 51 LLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMR 129 (413)
Q Consensus 51 ~~~~l~~-~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~ 129 (413)
+.+.+++ +|+ +|+|+|.++++.+.+|+++++.+|||+|||++++++++.... .+++++|++|+++|+.|+.+.++
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~---~~~~~lil~Pt~~L~~q~~~~~~ 85 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLERLQ 85 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc---CCCEEEEEECCHHHHHHHHHHHH
Confidence 3444544 466 899999999999999999999999999999999888877653 34499999999999999999999
Q ss_pred HhhcccCcEEEEEEcCcchH---HHHHHHHc-CCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhc---------
Q 015098 130 ALGDYLGVKVHACVGGTSVR---EDQRILQA-GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS--------- 196 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~--------- 196 (413)
++.. .++++..++|+.... .....+.. .++|+|+||+.+.+.+.. ....++++||+||||++..
T Consensus 86 ~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l 162 (414)
T 3oiy_A 86 KLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLL 162 (414)
T ss_dssp HHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHH
T ss_pred HHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHH
Confidence 9877 788999999998863 33333334 489999999999877764 4566799999999998764
Q ss_pred --cCcHHH-HHHHHhhCC-----------CCceEEEEEee-CCHhHH-HHHHHhcCCCEEEEecCCcccccCeEEEEEEe
Q 015098 197 --RGFKDQ-IYDIFQLLP-----------AKVQVGVFSAT-MPPEAL-EITRKFMNKPVRILVKRDELTLEGIKQFYVNV 260 (413)
Q Consensus 197 --~~~~~~-~~~~~~~~~-----------~~~~~i~~SaT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (413)
.++... +..++..++ ...|++++||| ++.... .....+.. +..........++.+.+...
T Consensus 163 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~ 238 (414)
T 3oiy_A 163 MMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS 238 (414)
T ss_dssp HHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEEESS
T ss_pred hhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchheeecc
Confidence 455555 677777665 78899999999 443322 22223322 11222333445666666554
Q ss_pred ccccchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeE-EecCCCCHHHHHHHHHHHhcCCCcEEEE----
Q 015098 261 EKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVS-ATHGDMDQNTRDIIMREFRSGSSRVLIT---- 335 (413)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~vli~---- 335 (413)
.+.+.+..+++. .++++||||++++.++.+++.|+..|..+. .+||. +|. ++.|++|+++||||
T Consensus 239 ----~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~ 307 (414)
T 3oiy_A 239 ----RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAY 307 (414)
T ss_dssp ----CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCT
T ss_pred ----CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCc
Confidence 255566666666 448999999999999999999999999998 88884 344 99999999999999
Q ss_pred cCCCCCCCCCCC-CcEEEEccCC--CChhhHHHhhhhccCCC----CcceEEEEeccCcHHHHHHHHHHhc
Q 015098 336 TDLLARGIDVQQ-VSLVINYDLP--TQPENYLHRIGRSGRFG----RKGVAINFVTRDDERMLFDIQKFYN 399 (413)
Q Consensus 336 t~~~~~G~d~~~-~~~vi~~~~~--~s~~~~~Q~~GR~~R~g----~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (413)
|+++++|+|+|+ +++||+++.| .+...|+||+||+||.| ..|.+++++ .+...+..++++++
T Consensus 308 T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 308 YGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp TCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred CchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 999999999999 9999999999 99999999999999988 478899888 77788888888888
No 19
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.7e-47 Score=383.30 Aligned_cols=352 Identities=20% Similarity=0.259 Sum_probs=276.3
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhh-hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHH
Q 015098 41 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 119 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 119 (413)
+|+++++++.+.+.+++.|+..|+++|.++++. +.+++++++++|||||||+++.++++..+... +.+++|++|+++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~ra 79 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKA 79 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGG
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHH
Confidence 588999999999999999999999999999998 88899999999999999999999998776532 349999999999
Q ss_pred HHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCc
Q 015098 120 LAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF 199 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~ 199 (413)
|+.|+.+.++++.. .+.++..++|+....... ...++|+|+||+++...+......+.++++||+||+|.+.+..+
T Consensus 80 La~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r 155 (720)
T 2zj8_A 80 LAEEKFQEFQDWEK-IGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDR 155 (720)
T ss_dssp GHHHHHHHTGGGGG-GTCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTT
T ss_pred HHHHHHHHHHHHHh-cCCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcc
Confidence 99999999975543 488899998876543321 24689999999999988887766678899999999999988788
Q ss_pred HHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEE-----ecc-----ccchHHH
Q 015098 200 KDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVN-----VEK-----EEWKLET 269 (413)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~~~~ 269 (413)
...+..++..++...|++++|||+++ ... +..+++... +... ..+..+...+.. ... .......
T Consensus 156 ~~~~~~ll~~l~~~~~ii~lSATl~n-~~~-~~~~l~~~~-~~~~---~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T 2zj8_A 156 GATLEVILAHMLGKAQIIGLSATIGN-PEE-LAEWLNAEL-IVSD---WRPVKLRRGVFYQGFVTWEDGSIDRFSSWEEL 229 (720)
T ss_dssp HHHHHHHHHHHBTTBEEEEEECCCSC-HHH-HHHHTTEEE-EECC---CCSSEEEEEEEETTEEEETTSCEEECSSTTHH
T ss_pred cHHHHHHHHHhhcCCeEEEEcCCcCC-HHH-HHHHhCCcc-cCCC---CCCCcceEEEEeCCeeeccccchhhhhHHHHH
Confidence 88888888877768999999999975 223 334444221 1111 111111111110 000 1234455
Q ss_pred HHHHHHhhcccceEEEEccHHHHHHHHHHhhhC---------------------------------CCeeEEecCCCCHH
Q 015098 270 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR---------------------------------DHTVSATHGDMDQN 316 (413)
Q Consensus 270 l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~---------------------------------~~~~~~~~~~~~~~ 316 (413)
+.+.+. .++++||||++++.++.+++.|.+. ...+..+||+++..
T Consensus 230 ~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~ 307 (720)
T 2zj8_A 230 VYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRD 307 (720)
T ss_dssp HHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHH
T ss_pred HHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHH
Confidence 555544 4579999999999999999888753 12489999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEE----cc----CCCChhhHHHhhhhccCCC--CcceEEEEeccC
Q 015098 317 TRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD----LPTQPENYLHRIGRSGRFG--RKGVAINFVTRD 386 (413)
Q Consensus 317 ~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~----~~~s~~~~~Q~~GR~~R~g--~~~~~~~~~~~~ 386 (413)
+|..+++.|++|.++|||||+++++|+|+|++++||+ |+ .|.+..+|.||+||+||.| ..|.|+++++..
T Consensus 308 ~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 387 (720)
T 2zj8_A 308 ERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSD 387 (720)
T ss_dssp HHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSS
T ss_pred HHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCc
Confidence 9999999999999999999999999999999999998 55 5889999999999999998 468999999888
Q ss_pred cHHHHHHHHHHhccccccCCch
Q 015098 387 DERMLFDIQKFYNVVIEELPSN 408 (413)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~ 408 (413)
+.. ..+++++....+++...
T Consensus 388 ~~~--~~~~~~~~~~~~~i~s~ 407 (720)
T 2zj8_A 388 DPR--EVMNHYIFGKPEKLFSQ 407 (720)
T ss_dssp CHH--HHHHHHTTSCCCCCCCC
T ss_pred cHH--HHHHHHhcCCCCCcEee
Confidence 732 23456666666666544
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=9.4e-47 Score=378.18 Aligned_cols=354 Identities=18% Similarity=0.247 Sum_probs=271.1
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhh-hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcH
Q 015098 40 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR 118 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~ 118 (413)
-+|+++++++.+.+.+++.|+..|+++|.++++. +.+++++++++|||||||+++.++++..+... +.+++|++|++
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r 85 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLR 85 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcH
Confidence 3699999999999999999999999999999999 78899999999999999999999998776532 34999999999
Q ss_pred HHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccC
Q 015098 119 ELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG 198 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~ 198 (413)
+|+.|+.+.++.+ ...+..+...+|+....... ...++|+|+||++|...+......+.++++||+||+|.+.+..
T Consensus 86 ~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~ 161 (715)
T 2va8_A 86 ALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPE 161 (715)
T ss_dssp HHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTT
T ss_pred HHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcc
Confidence 9999999999644 34588888888876543321 1368999999999999888876667889999999999988777
Q ss_pred cHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEE------------EEec-----
Q 015098 199 FKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFY------------VNVE----- 261 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~----- 261 (413)
+...+..++..++ ..|++++|||+++ ...+. .+++.+. +..... +..+...+ ....
T Consensus 162 ~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~-~~l~~~~-~~~~~r---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (715)
T 2va8_A 162 RGPVVESVTIRAK-RRNLLALSATISN-YKQIA-KWLGAEP-VATNWR---PVPLIEGVIYPERKKKEYNVIFKDNTTKK 234 (715)
T ss_dssp THHHHHHHHHHHH-TSEEEEEESCCTT-HHHHH-HHHTCEE-EECCCC---SSCEEEEEEEECSSTTEEEEEETTSCEEE
T ss_pred cchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHH-HHhCCCc-cCCCCC---CCCceEEEEecCCcccceeeecCcchhhh
Confidence 8888888877765 7899999999974 23333 3444321 111111 11111111 0000
Q ss_pred --cccchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCC------------------------------------
Q 015098 262 --KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRD------------------------------------ 303 (413)
Q Consensus 262 --~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~------------------------------------ 303 (413)
........+.+.+. .++++||||++++.++.+++.|.+..
T Consensus 235 ~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 312 (715)
T 2va8_A 235 VHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLIS 312 (715)
T ss_dssp EESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHh
Confidence 01233444444443 45799999999999999999997642
Q ss_pred CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEE----cc-------CCCChhhHHHhhhhccC
Q 015098 304 HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD-------LPTQPENYLHRIGRSGR 372 (413)
Q Consensus 304 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~-------~~~s~~~~~Q~~GR~~R 372 (413)
..+..+||+++..+|..+++.|.+|..+|||||+++++|+|+|++++||+ |+ .|.|..+|.||+||+||
T Consensus 313 ~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR 392 (715)
T 2va8_A 313 KGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGR 392 (715)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCC
T ss_pred cCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCC
Confidence 24889999999999999999999999999999999999999999999998 88 78999999999999999
Q ss_pred CCC--cceEEEEeccCcHHHHHHHHHHhccccccCCchh
Q 015098 373 FGR--KGVAINFVTRDDERMLFDIQKFYNVVIEELPSNV 409 (413)
Q Consensus 373 ~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (413)
.|. .|.|++++...+. ....+++++....+++..++
T Consensus 393 ~g~~~~G~~~~l~~~~~~-~~~~~~~~l~~~~e~~~s~l 430 (715)
T 2va8_A 393 PGFDQIGESIVVVRDKED-VDRVFKKYVLSDVEPIESKL 430 (715)
T ss_dssp TTTCSCEEEEEECSCGGG-HHHHHHHTTSSCCCCCCCSC
T ss_pred CCCCCCceEEEEeCCchH-HHHHHHHHHcCCCCCceecC
Confidence 884 6899999887663 22234456655555555443
No 21
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2e-47 Score=381.81 Aligned_cols=352 Identities=16% Similarity=0.244 Sum_probs=268.3
Q ss_pred CcccCC--CCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcH
Q 015098 41 SFDAMG--LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR 118 (413)
Q Consensus 41 ~~~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~ 118 (413)
+|++++ +++.+.+.+++.|+..|+++|.++++.+.+++++++++|||||||+++.++++..+.. +++++|++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r 78 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLR 78 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcH
Confidence 477788 9999999999999999999999999999999999999999999999999999887654 34999999999
Q ss_pred HHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccC
Q 015098 119 ELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG 198 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~ 198 (413)
+|+.|+.+.++.+. ..+.++..++|+...... ....++|+|+||++|...+.+....+.++++||+||+|.+.+.+
T Consensus 79 ~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 79 ALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp HHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCC
Confidence 99999999996543 447888888887664332 12368999999999999888866667889999999999998877
Q ss_pred cHHHHHHHHhhC---CCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEE------Eec------cc
Q 015098 199 FKDQIYDIFQLL---PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYV------NVE------KE 263 (413)
Q Consensus 199 ~~~~~~~~~~~~---~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~------~~ 263 (413)
+...+..++..+ ++..|++++|||+++ ... +..+++.+. +..... +..+...+. ... ..
T Consensus 155 r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~-~~~~l~~~~-~~~~~r---~~~l~~~~~~~~~~~~~~~~~~~~~~ 228 (702)
T 2p6r_A 155 RGATLEILVTKMRRMNKALRVIGLSATAPN-VTE-IAEWLDADY-YVSDWR---PVPLVEGVLCEGTLELFDGAFSTSRR 228 (702)
T ss_dssp THHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHH-HHHHTTCEE-EECCCC---SSCEEEEEECSSEEEEEETTEEEEEE
T ss_pred cccHHHHHHHHHHhcCcCceEEEECCCcCC-HHH-HHHHhCCCc-ccCCCC---CccceEEEeeCCeeeccCcchhhhhh
Confidence 776666665544 568999999999975 333 334444322 111111 111111110 000 00
Q ss_pred cchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhC------------------------------CCeeEEecCCC
Q 015098 264 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR------------------------------DHTVSATHGDM 313 (413)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~------------------------------~~~~~~~~~~~ 313 (413)
......+.+.+. .++++||||++++.++.+++.|.+. +..+..+||++
T Consensus 229 ~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l 306 (702)
T 2p6r_A 229 VKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGL 306 (702)
T ss_dssp CCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTS
T ss_pred hhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCC
Confidence 114455555544 4679999999999999999888642 13578899999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEE----cc---CCCChhhHHHhhhhccCCC--CcceEEEEec
Q 015098 314 DQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD---LPTQPENYLHRIGRSGRFG--RKGVAINFVT 384 (413)
Q Consensus 314 ~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~---~~~s~~~~~Q~~GR~~R~g--~~~~~~~~~~ 384 (413)
+..+|..+++.|++|+++|||||+++++|+|+|++++||+ |+ .|.+..+|.||+||+||.| ..|.|++++.
T Consensus 307 ~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 386 (702)
T 2p6r_A 307 LNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVG 386 (702)
T ss_dssp CHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECC
T ss_pred CHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEec
Confidence 9999999999999999999999999999999999999998 54 6889999999999999998 4689999988
Q ss_pred cCcHHHHHHHHHHhccccccCCchh
Q 015098 385 RDDERMLFDIQKFYNVVIEELPSNV 409 (413)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (413)
..+.. ..+++++....+++..++
T Consensus 387 ~~~~~--~~~~~~l~~~~e~~~s~l 409 (702)
T 2p6r_A 387 KRDRE--IAVKRYIFGEPERITSKL 409 (702)
T ss_dssp GGGHH--HHHHTTTSSCCCCCCCCC
T ss_pred CccHH--HHHHHHhcCCCCCceeec
Confidence 87732 233345555555554433
No 22
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=6.1e-47 Score=370.56 Aligned_cols=329 Identities=18% Similarity=0.213 Sum_probs=200.6
Q ss_pred CCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCC--ceeEEEEcCcHHHHHHHHHHHHHhhcccC
Q 015098 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV--QCQALVLAPTRELAQQIEKVMRALGDYLG 136 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~liv~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
+..+|+|+|.++++.+++|+++++.+|||+|||+++++++++.+..... ++++||++|+++|+.||.+.+.++....+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 3458999999999999999999999999999999999999888765432 45999999999999999999999988888
Q ss_pred cEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCC-CCCcceEEEeccchHHhccCcHHHH-HHHHhh----C
Q 015098 137 VKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL-RPDYIKMFVLDEADEMLSRGFKDQI-YDIFQL----L 210 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~-~~~~~~~iV~DE~h~~~~~~~~~~~-~~~~~~----~ 210 (413)
+.+..++|+............+++|+|+||+.|.+.+..... .+.++++||+||||++.+.+....+ ...+.. .
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~ 163 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSA 163 (556)
T ss_dssp CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhccc
Confidence 999999998876655555556689999999999999988776 7888999999999998876543332 222221 1
Q ss_pred CCCceEEEEEeeCCHh-----------HHHHHHH------------------hcCCCEEEEecCCcccccC---------
Q 015098 211 PAKVQVGVFSATMPPE-----------ALEITRK------------------FMNKPVRILVKRDELTLEG--------- 252 (413)
Q Consensus 211 ~~~~~~i~~SaT~~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~~~~~~--------- 252 (413)
.+..+++++||||... ...+... +...+..............
T Consensus 164 ~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (556)
T 4a2p_A 164 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 243 (556)
T ss_dssp --CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHH
Confidence 3568899999999531 1111111 1111111111000000000
Q ss_pred ------------eEEEEEE-------------------------------------------------------------
Q 015098 253 ------------IKQFYVN------------------------------------------------------------- 259 (413)
Q Consensus 253 ------------~~~~~~~------------------------------------------------------------- 259 (413)
+......
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (556)
T 4a2p_A 244 SETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 323 (556)
T ss_dssp HHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 0000000
Q ss_pred -------------------------------------------eccccchHHHHHHHHHh----hcccceEEEEccHHHH
Q 015098 260 -------------------------------------------VEKEEWKLETLCDLYET----LAITQSVIFVNTRRKV 292 (413)
Q Consensus 260 -------------------------------------------~~~~~~~~~~l~~~~~~----~~~~~~lif~~~~~~~ 292 (413)
......+...+.+++.. ..+.++||||+++..+
T Consensus 324 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~ 403 (556)
T 4a2p_A 324 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 403 (556)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHH
Confidence 00012244445555543 3567999999999999
Q ss_pred HHHHHHhhhC------------CCeeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEcCCCCCCCCCCCCcEEEEccCCCC
Q 015098 293 DWLTDKMRSR------------DHTVSATHGDMDQNTRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 359 (413)
Q Consensus 293 ~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s 359 (413)
+.+++.|+.. |.....+||+++..+|.++++.|++ |+++|||||+++++|+|+|++++||++++|++
T Consensus 404 ~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s 483 (556)
T 4a2p_A 404 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGN 483 (556)
T ss_dssp HHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCCSC
T ss_pred HHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCC
Confidence 9999999876 5566677888999999999999999 99999999999999999999999999999999
Q ss_pred hhhHHHhhhhccCCCCcceEEEEeccCcHH
Q 015098 360 PENYLHRIGRSGRFGRKGVAINFVTRDDER 389 (413)
Q Consensus 360 ~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 389 (413)
+..|+||+|| ||. +.|.+++++++.+..
T Consensus 484 ~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 484 VTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp HHHHHHC----------CCEEEEESCHHHH
T ss_pred HHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 9999999999 998 789999999987653
No 23
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.3e-47 Score=381.52 Aligned_cols=354 Identities=22% Similarity=0.257 Sum_probs=230.3
Q ss_pred HHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCC--ceeEEEEcCcHHHHHHHHHHHH
Q 015098 52 LRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV--QCQALVLAPTRELAQQIEKVMR 129 (413)
Q Consensus 52 ~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~liv~P~~~l~~q~~~~~~ 129 (413)
...+..+|+..||++|.++++.+++|+++++++|||+|||++++++++..+..... ++++||++|+++|+.||.+.++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999887765432 2599999999999999999999
Q ss_pred HhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCC-CCCcceEEEeccchHHhccCc-HHHHHHHH
Q 015098 130 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL-RPDYIKMFVLDEADEMLSRGF-KDQIYDIF 207 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~-~~~~~~~iV~DE~h~~~~~~~-~~~~~~~~ 207 (413)
++....++.+..++|+............+++|+|+||+.|.+.+..... .+.++++||+||||++.+... ...+...+
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l 162 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYL 162 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred HHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHH
Confidence 9988778999999988765444444455789999999999999987766 678899999999999875542 22222222
Q ss_pred hh-----CCCCceEEEEEeeCC-------HhHHHHHHH----------------------hcCCCEEEEecCCcccc---
Q 015098 208 QL-----LPAKVQVGVFSATMP-------PEALEITRK----------------------FMNKPVRILVKRDELTL--- 250 (413)
Q Consensus 208 ~~-----~~~~~~~i~~SaT~~-------~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~--- 250 (413)
.. .+...+++++||||. .+....+.. +...|............
T Consensus 163 ~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~f 242 (696)
T 2ykg_A 163 DQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKF 242 (696)
T ss_dssp HHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHH
T ss_pred HHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChH
Confidence 22 245789999999997 221111111 11112111100000000
Q ss_pred --------------------------------------------------------------------------------
Q 015098 251 -------------------------------------------------------------------------------- 250 (413)
Q Consensus 251 -------------------------------------------------------------------------------- 250 (413)
T Consensus 243 s~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 322 (696)
T 2ykg_A 243 KYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDA 322 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHH
Confidence
Q ss_pred ----------------------------cCeEEEEE---------------EeccccchHHHHHHHHHhh----cccceE
Q 015098 251 ----------------------------EGIKQFYV---------------NVEKEEWKLETLCDLYETL----AITQSV 283 (413)
Q Consensus 251 ----------------------------~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~----~~~~~l 283 (413)
+.+.+.+. .......+...+..++... .++++|
T Consensus 323 ~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~I 402 (696)
T 2ykg_A 323 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITI 402 (696)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEE
T ss_pred HhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEE
Confidence 00000000 0001234566667777654 567999
Q ss_pred EEEccHHHHHHHHHHhhhCC----CeeEEe--------cCCCCHHHHHHHHHHHhc-CCCcEEEEcCCCCCCCCCCCCcE
Q 015098 284 IFVNTRRKVDWLTDKMRSRD----HTVSAT--------HGDMDQNTRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSL 350 (413)
Q Consensus 284 if~~~~~~~~~l~~~L~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~ 350 (413)
|||+++..++.+++.|+..+ +.+..+ ||+++..+|.++++.|++ |+.+|||||+++++|+|+|++++
T Consensus 403 IF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~ 482 (696)
T 2ykg_A 403 LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNL 482 (696)
T ss_dssp EECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSE
T ss_pred EEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCE
Confidence 99999999999999999987 788888 559999999999999998 99999999999999999999999
Q ss_pred EEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHH----HHHhccccccCCc
Q 015098 351 VINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI----QKFYNVVIEELPS 407 (413)
Q Consensus 351 vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 407 (413)
||++++|+++..|+||+|| ||. +.|.++.+++..+......+ ++.++....+++.
T Consensus 483 VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 541 (696)
T 2ykg_A 483 VILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQT 541 (696)
T ss_dssp EEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999 998 67999999998776555555 5555555555544
No 24
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=7.5e-46 Score=362.80 Aligned_cols=331 Identities=19% Similarity=0.215 Sum_probs=229.3
Q ss_pred CCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCC--ceeEEEEcCcHHHHHHHHHHHHHhhcccCcEE
Q 015098 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV--QCQALVLAPTRELAQQIEKVMRALGDYLGVKV 139 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~ 139 (413)
+|+|+|.++++.+++|+++++.+|||+|||+++++++++.+..... ++++||++|+++|+.||.+.+.++....++.+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 7999999999999999999999999999999999999888766432 55999999999999999999999988888999
Q ss_pred EEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCC-CCCcceEEEeccchHHhccCc-HHHHHHHHhhC-----CC
Q 015098 140 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL-RPDYIKMFVLDEADEMLSRGF-KDQIYDIFQLL-----PA 212 (413)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~-~~~~~~~iV~DE~h~~~~~~~-~~~~~~~~~~~-----~~ 212 (413)
..++|+............+++|+|+||+.+.+.+..... .+.++++||+||||++.+.+. ...+...+... .+
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDP 163 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSC
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCC
Confidence 999999876655555555689999999999999987766 678899999999999876642 23332333221 24
Q ss_pred CceEEEEEeeCCHhH-------HH---HHHHhcCCCEEEEecCC------cccccCeEEEEEE-----------------
Q 015098 213 KVQVGVFSATMPPEA-------LE---ITRKFMNKPVRILVKRD------ELTLEGIKQFYVN----------------- 259 (413)
Q Consensus 213 ~~~~i~~SaT~~~~~-------~~---~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~----------------- 259 (413)
..+++++||||.... .. .+...+........... ....+........
T Consensus 164 ~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (555)
T 3tbk_A 164 LPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKE 243 (555)
T ss_dssp CCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHH
T ss_pred CCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHHH
Confidence 578999999995421 11 11112221111111000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 015098 260 -------------------------------------------------------------------------------- 259 (413)
Q Consensus 260 -------------------------------------------------------------------------------- 259 (413)
T Consensus 244 ~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 323 (555)
T 3tbk_A 244 TEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMT 323 (555)
T ss_dssp HHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence
Q ss_pred ------------------------------------------eccccchHHHHHHHHHh----hcccceEEEEccHHHHH
Q 015098 260 ------------------------------------------VEKEEWKLETLCDLYET----LAITQSVIFVNTRRKVD 293 (413)
Q Consensus 260 ------------------------------------------~~~~~~~~~~l~~~~~~----~~~~~~lif~~~~~~~~ 293 (413)
......+...+.+++.. ...+++||||+++..++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~ 403 (555)
T 3tbk_A 324 DALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVD 403 (555)
T ss_dssp HHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHH
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHH
Confidence 00012244455555543 35579999999999999
Q ss_pred HHHHHhhhCC------------CeeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEcCCCCCCCCCCCCcEEEEccCCCCh
Q 015098 294 WLTDKMRSRD------------HTVSATHGDMDQNTRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360 (413)
Q Consensus 294 ~l~~~L~~~~------------~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~ 360 (413)
.+++.|...+ .....+||+++..+|.++++.|++ |+++|||||+++++|+|+|++++||++++|+++
T Consensus 404 ~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~ 483 (555)
T 3tbk_A 404 ALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNV 483 (555)
T ss_dssp HHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSC
T ss_pred HHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCH
Confidence 9999998763 345556679999999999999999 999999999999999999999999999999999
Q ss_pred hhHHHhhhhccCCCCcceEEEEeccCcHHHHHHH
Q 015098 361 ENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 394 (413)
Q Consensus 361 ~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~ 394 (413)
..|+||+|| ||. +.|.+++++++.+......+
T Consensus 484 ~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 484 IKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred HHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999 898 88999999998876655555
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-46 Score=381.31 Aligned_cols=348 Identities=19% Similarity=0.217 Sum_probs=267.7
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHH
Q 015098 41 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 120 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l 120 (413)
.|..+++++.+...+...+...|+++|.++++.+.+|++++++||||||||+++.++++..+..+. +++|++|+++|
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~---rvlvl~PtraL 239 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQ---RVIYTSPIKAL 239 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTC---EEEEEESSHHH
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCC---eEEEEcCcHHH
Confidence 566677777766666666666899999999999999999999999999999999999998875443 99999999999
Q ss_pred HHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcH
Q 015098 121 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFK 200 (413)
Q Consensus 121 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~ 200 (413)
+.|+++.+.++.. .+..++|+... ...++|+|+||+.|.+.+......+.++++||+||||++.+.++.
T Consensus 240 a~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg 308 (1108)
T 3l9o_A 240 SNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERG 308 (1108)
T ss_dssp HHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHH
T ss_pred HHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchH
Confidence 9999999999764 46667777663 245899999999999999887777788999999999999988888
Q ss_pred HHHHHHHhhCCCCceEEEEEeeCCHh--HHHHHHHhcCCCEEEEecCCcccccCeEEEEEEecc---------c------
Q 015098 201 DQIYDIFQLLPAKVQVGVFSATMPPE--ALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEK---------E------ 263 (413)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~SaT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~------ 263 (413)
..+..++..++...|++++|||+++. ....+......+..+...... +..+.+++..... .
T Consensus 309 ~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~vd~~~~~~~~ 386 (1108)
T 3l9o_A 309 VVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREE 386 (1108)
T ss_dssp HHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC--SSCEEEEEEETTSSCCEEEEETTTEECHH
T ss_pred HHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEeecCCcceeeeeccccchhhh
Confidence 99999999999999999999998754 334555555555544433221 1222222211100 0
Q ss_pred ---------------------------------------cchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCC
Q 015098 264 ---------------------------------------EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDH 304 (413)
Q Consensus 264 ---------------------------------------~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~ 304 (413)
...+..+...+.....+++||||+++..++.++..|...+.
T Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~ 466 (1108)
T 3l9o_A 387 NFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDF 466 (1108)
T ss_dssp HHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHH
T ss_pred hHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccC
Confidence 11222333444444567999999999999999999865322
Q ss_pred e---------------------------------------eEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCC
Q 015098 305 T---------------------------------------VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDV 345 (413)
Q Consensus 305 ~---------------------------------------~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~ 345 (413)
. +..+||++++.+|..+++.|.+|.++|||||+++++|+|+
T Consensus 467 ~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDi 546 (1108)
T 3l9o_A 467 NSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNM 546 (1108)
T ss_dssp HCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC
T ss_pred CCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCC
Confidence 1 7899999999999999999999999999999999999999
Q ss_pred CCCcEEEEccCC--------CChhhHHHhhhhccCCC--CcceEEEEeccCcHHHHHHHHHHhccccccCC
Q 015098 346 QQVSLVINYDLP--------TQPENYLHRIGRSGRFG--RKGVAINFVTRDDERMLFDIQKFYNVVIEELP 406 (413)
Q Consensus 346 ~~~~~vi~~~~~--------~s~~~~~Q~~GR~~R~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (413)
|++++||+++.+ .|..+|+||+||+||.| ..|.|++++.+.... ..+.+++.....++.
T Consensus 547 P~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~--~~~~~l~~~~~~~L~ 615 (1108)
T 3l9o_A 547 PAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEP--QVAKGMVKGQADRLD 615 (1108)
T ss_dssp --CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCH--HHHHHHHHCCCCCCC
T ss_pred CCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCH--HHHHHHhcCCCcccc
Confidence 999999976653 46778999999999999 568888888776332 234445555444443
No 26
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.2e-44 Score=348.81 Aligned_cols=323 Identities=20% Similarity=0.232 Sum_probs=248.7
Q ss_pred CCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEE
Q 015098 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
+|+|+|.++++.+.++ ++++.+|||+|||++++.++...+. ..+.++||++|+++|+.||.+++.++....+..+..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 7999999999999999 9999999999999999998887765 234499999999999999999999987544557888
Q ss_pred EEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEe
Q 015098 142 CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 221 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 221 (413)
++|+......... ...++|+|+||+.+...+........++++||+||||++.+......+...+.......+++++||
T Consensus 86 ~~g~~~~~~~~~~-~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTa 164 (494)
T 1wp9_A 86 LTGEKSPEERSKA-WARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTA 164 (494)
T ss_dssp ECSCSCHHHHHHH-HHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEES
T ss_pred eeCCcchhhhhhh-ccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEec
Confidence 8888776544333 335799999999999988887778888999999999998765444455555555556788999999
Q ss_pred eCCHh---HHHHHHHhcCCCEEEEecCCcc-----cccCeEEEEEEec--------------------------------
Q 015098 222 TMPPE---ALEITRKFMNKPVRILVKRDEL-----TLEGIKQFYVNVE-------------------------------- 261 (413)
Q Consensus 222 T~~~~---~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-------------------------------- 261 (413)
||..+ .......+.............. ............+
T Consensus 165 Tp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (494)
T 1wp9_A 165 SPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSP 244 (494)
T ss_dssp CSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCT
T ss_pred CCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 99743 3333332222211111110000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 015098 262 -------------------------------------------------------------------------------- 261 (413)
Q Consensus 262 -------------------------------------------------------------------------------- 261 (413)
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (494)
T 1wp9_A 245 DIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKR 324 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHH
T ss_pred CcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHH
Confidence
Q ss_pred ---------------cccchHHHHHHHHHh----hcccceEEEEccHHHHHHHHHHhhhCCCeeEEecC--------CCC
Q 015098 262 ---------------KEEWKLETLCDLYET----LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHG--------DMD 314 (413)
Q Consensus 262 ---------------~~~~~~~~l~~~~~~----~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~--------~~~ 314 (413)
....+...+.+++.. ..++++||||+++..++.+++.|+..|..+..+|| +++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~ 404 (494)
T 1wp9_A 325 MKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLS 404 (494)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCC
Confidence 122345556666655 35789999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHH
Q 015098 315 QNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 389 (413)
Q Consensus 315 ~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 389 (413)
..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|+++..|.||+||+||.|+ |.++.++++.+.+
T Consensus 405 ~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 405 QREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred HHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 9999999987543
No 27
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-44 Score=364.70 Aligned_cols=321 Identities=20% Similarity=0.266 Sum_probs=255.5
Q ss_pred HHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhccc
Q 015098 56 YAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL 135 (413)
Q Consensus 56 ~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~ 135 (413)
..++| .|+++|.++++.+.+|+++++++|||+|||+++.++++..+..+ .+++|++|+++|+.|+++.+.++..
T Consensus 81 ~~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g---~rvL~l~PtkaLa~Q~~~~l~~~~~-- 154 (1010)
T 2xgj_A 81 RTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK---QRVIYTSPIKALSNQKYRELLAEFG-- 154 (1010)
T ss_dssp CCCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHHHHS--
T ss_pred HhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccC---CeEEEECChHHHHHHHHHHHHHHhC--
Confidence 34566 59999999999999999999999999999999998888776543 4999999999999999999998764
Q ss_pred CcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCce
Q 015098 136 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 215 (413)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~ 215 (413)
.+..++|+.... ..++|+|+||+.|.+.+.++...+.++++||+||+|.+.+..+...+..++..++...+
T Consensus 155 --~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~ 225 (1010)
T 2xgj_A 155 --DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVR 225 (1010)
T ss_dssp --CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCE
T ss_pred --CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCe
Confidence 567777776643 35799999999999988887778889999999999999998888899999999999999
Q ss_pred EEEEEeeCCHhHH--HHHHHhcCCCEEEEecCCcccccCeEEEEEEec---------cc---------------------
Q 015098 216 VGVFSATMPPEAL--EITRKFMNKPVRILVKRDELTLEGIKQFYVNVE---------KE--------------------- 263 (413)
Q Consensus 216 ~i~~SaT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--------------------- 263 (413)
++++|||+++... ..+....+.+..+..... .+..+.+++.... ..
T Consensus 226 il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~--rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (1010)
T 2xgj_A 226 YVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF--RPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGD 303 (1010)
T ss_dssp EEEEECCCTTHHHHHHHHHHHHTSCEEEEEECC--CSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-----
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC--CcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcc
Confidence 9999999876422 223333344544433322 1222333332211 00
Q ss_pred ------------------------cchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCC---------------
Q 015098 264 ------------------------EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDH--------------- 304 (413)
Q Consensus 264 ------------------------~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~--------------- 304 (413)
...+..+...+......++||||+++..++.+++.|...+.
T Consensus 304 ~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~ 383 (1010)
T 2xgj_A 304 DPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNN 383 (1010)
T ss_dssp -------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 11223344444444556999999999999999999977443
Q ss_pred ------------------------eeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEE----ccC
Q 015098 305 ------------------------TVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YDL 356 (413)
Q Consensus 305 ------------------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~~ 356 (413)
.+..+||++++.+|..+++.|++|.++|||||+++++|+|+|++++||+ |+.
T Consensus 384 ~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~ 463 (1010)
T 2xgj_A 384 AIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDG 463 (1010)
T ss_dssp HHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECS
T ss_pred HHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCC
Confidence 2788999999999999999999999999999999999999999999998 888
Q ss_pred ----CCChhhHHHhhhhccCCCCc--ceEEEEeccC-cHHHHHH
Q 015098 357 ----PTQPENYLHRIGRSGRFGRK--GVAINFVTRD-DERMLFD 393 (413)
Q Consensus 357 ----~~s~~~~~Q~~GR~~R~g~~--~~~~~~~~~~-~~~~~~~ 393 (413)
|.++.+|.||+||+||.|.+ |.|++++.+. +...+..
T Consensus 464 ~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~ 507 (1010)
T 2xgj_A 464 QQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKG 507 (1010)
T ss_dssp SCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHH
T ss_pred cCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHH
Confidence 88999999999999999974 9999999876 4444433
No 28
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4.6e-45 Score=369.11 Aligned_cols=331 Identities=18% Similarity=0.217 Sum_probs=208.4
Q ss_pred HCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCC--ceeEEEEcCcHHHHHHHHHHHHHhhcc
Q 015098 57 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV--QCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~liv~P~~~l~~q~~~~~~~~~~~ 134 (413)
.+|+..|+|+|.++++.+.+|+++++++|||+|||++++++++..+..... ++++||++|+++|+.|+.+.++++...
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 357889999999999999999999999999999999999999988776432 559999999999999999999999888
Q ss_pred cCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCC-CCCcceEEEeccchHHhccCcH-HHHHHHHhh---
Q 015098 135 LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL-RPDYIKMFVLDEADEMLSRGFK-DQIYDIFQL--- 209 (413)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~-~~~~~~~iV~DE~h~~~~~~~~-~~~~~~~~~--- 209 (413)
.++.+..++|+............+++|+|+||+.|.+.+..... .+.++++||+||||++.+.... ..+..+...
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~ 402 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 402 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhc
Confidence 88999999999876665556667899999999999999987766 6788999999999998765432 222233222
Q ss_pred -CCCCceEEEEEeeCCH-----------hHHHHHH------------------HhcCCCEEEEecCCcccccC-------
Q 015098 210 -LPAKVQVGVFSATMPP-----------EALEITR------------------KFMNKPVRILVKRDELTLEG------- 252 (413)
Q Consensus 210 -~~~~~~~i~~SaT~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~------- 252 (413)
..+..+++++||||.. ....+.. .+...+..............
T Consensus 403 ~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (797)
T 4a2q_A 403 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 482 (797)
T ss_dssp TCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHH
T ss_pred cCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHH
Confidence 1456899999999952 1111111 11111111110000000000
Q ss_pred -----------------eEEE-EEEe------------------------------------------------------
Q 015098 253 -----------------IKQF-YVNV------------------------------------------------------ 260 (413)
Q Consensus 253 -----------------~~~~-~~~~------------------------------------------------------ 260 (413)
+... ....
T Consensus 483 l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 562 (797)
T 4a2q_A 483 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 562 (797)
T ss_dssp HHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 0000 0000
Q ss_pred ----------------------------------------------ccccchHHHHHHHHHh----hcccceEEEEccHH
Q 015098 261 ----------------------------------------------EKEEWKLETLCDLYET----LAITQSVIFVNTRR 290 (413)
Q Consensus 261 ----------------------------------------------~~~~~~~~~l~~~~~~----~~~~~~lif~~~~~ 290 (413)
.....+...+..++.. ..+.++||||+++.
T Consensus 563 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~ 642 (797)
T 4a2q_A 563 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 642 (797)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHH
T ss_pred cHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHH
Confidence 0012244445555543 45579999999999
Q ss_pred HHHHHHHHhhhC------------CCeeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEcCCCCCCCCCCCCcEEEEccCC
Q 015098 291 KVDWLTDKMRSR------------DHTVSATHGDMDQNTRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVINYDLP 357 (413)
Q Consensus 291 ~~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~~~~~ 357 (413)
.++.+.+.|+.. |..+..+||+++..+|.++++.|++ |+++|||||+++++|+|+|++++||++++|
T Consensus 643 ~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p 722 (797)
T 4a2q_A 643 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 722 (797)
T ss_dssp HHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESCC
T ss_pred HHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCC
Confidence 999999999873 5566777899999999999999999 999999999999999999999999999999
Q ss_pred CChhhHHHhhhhccCCCCcceEEEEeccCcHH
Q 015098 358 TQPENYLHRIGRSGRFGRKGVAINFVTRDDER 389 (413)
Q Consensus 358 ~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 389 (413)
+++..|+||+|| ||. +.|.++++++..+..
T Consensus 723 ~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 723 GNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp SCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 999999999999 999 789999999887553
No 29
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=7.3e-44 Score=363.81 Aligned_cols=331 Identities=18% Similarity=0.214 Sum_probs=207.8
Q ss_pred HCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCC--ceeEEEEcCcHHHHHHHHHHHHHhhcc
Q 015098 57 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV--QCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~liv~P~~~l~~q~~~~~~~~~~~ 134 (413)
-.|+..|+++|.++++.+++|+++++.+|||+|||++++++++..+..... ++++||++|+++|+.||.+.++++...
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 346779999999999999999999999999999999999999888766431 458999999999999999999999887
Q ss_pred cCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCC-CCCcceEEEeccchHHhccCc-HHHHHHHHhh---
Q 015098 135 LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL-RPDYIKMFVLDEADEMLSRGF-KDQIYDIFQL--- 209 (413)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~-~~~~~~~iV~DE~h~~~~~~~-~~~~~~~~~~--- 209 (413)
.++.+..++|+............+++|+|+||++|.+.+..... .+.++++||+||||++..... ...+..+...
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~ 402 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 402 (936)
T ss_dssp TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHT
T ss_pred cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhc
Confidence 78999999998866554444455689999999999999987666 677899999999999876542 2223233322
Q ss_pred -CCCCceEEEEEeeCCH-----------hHHHHH------------------HHhcCCCEEEEecCCcccccC-------
Q 015098 210 -LPAKVQVGVFSATMPP-----------EALEIT------------------RKFMNKPVRILVKRDELTLEG------- 252 (413)
Q Consensus 210 -~~~~~~~i~~SaT~~~-----------~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~------- 252 (413)
..+..+++++||||.. .+..+. ..+...+..............
T Consensus 403 ~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~ 482 (936)
T 4a2w_A 403 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 482 (936)
T ss_dssp TCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred cCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHH
Confidence 2456889999999952 111111 112222221111110000000
Q ss_pred --------------------eEEEEEEe----------------------------------------------------
Q 015098 253 --------------------IKQFYVNV---------------------------------------------------- 260 (413)
Q Consensus 253 --------------------~~~~~~~~---------------------------------------------------- 260 (413)
+.......
T Consensus 483 l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~ 562 (936)
T 4a2w_A 483 LMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 562 (936)
T ss_dssp HHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 00000000
Q ss_pred ----------------------------------------------ccccchHHHHHHHHHh----hcccceEEEEccHH
Q 015098 261 ----------------------------------------------EKEEWKLETLCDLYET----LAITQSVIFVNTRR 290 (413)
Q Consensus 261 ----------------------------------------------~~~~~~~~~l~~~~~~----~~~~~~lif~~~~~ 290 (413)
.....+...+.+++.. ..+.++||||+++.
T Consensus 563 ~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~ 642 (936)
T 4a2w_A 563 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 642 (936)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHH
Confidence 0012234445555544 34579999999999
Q ss_pred HHHHHHHHhhhC------------CCeeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEcCCCCCCCCCCCCcEEEEccCC
Q 015098 291 KVDWLTDKMRSR------------DHTVSATHGDMDQNTRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVINYDLP 357 (413)
Q Consensus 291 ~~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~~~~~ 357 (413)
.++.+.+.|... |.....+||+++..+|.++++.|++ |+++|||||+++++|+|+|++++||++++|
T Consensus 643 ~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p 722 (936)
T 4a2w_A 643 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 722 (936)
T ss_dssp HHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESCC
T ss_pred HHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCC
Confidence 999999999976 5566677899999999999999999 999999999999999999999999999999
Q ss_pred CChhhHHHhhhhccCCCCcceEEEEeccCcHH
Q 015098 358 TQPENYLHRIGRSGRFGRKGVAINFVTRDDER 389 (413)
Q Consensus 358 ~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 389 (413)
+|+..|+||+|| ||. ..|.++.+++..+..
T Consensus 723 ~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 723 GNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp SCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred CCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 999999999999 998 679999998886543
No 30
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=8.6e-44 Score=365.72 Aligned_cols=321 Identities=20% Similarity=0.237 Sum_probs=257.8
Q ss_pred HCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccC
Q 015098 57 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG 136 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
..|+ +|+++|.++++.+++|++++++||||||||++++++++..+. .++++||++|+++|+.|+.+.++++. ..+
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~---~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~ 148 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLERLQKLA-DEK 148 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHHHHTTS-CTT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh---cCCeEEEEechHHHHHHHHHHHHHhh-CCC
Confidence 4677 799999999999999999999999999999998888877663 34499999999999999999999977 668
Q ss_pred cEEEEEEcCcch---HHHHHHHHc-CCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhc-----------cCcHH
Q 015098 137 VKVHACVGGTSV---REDQRILQA-GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-----------RGFKD 201 (413)
Q Consensus 137 ~~~~~~~~~~~~---~~~~~~~~~-~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~-----------~~~~~ 201 (413)
+++..++|+.+. ......+.. .++|+|+||+.|.+++.. ..+.++++||+||||++.. .++..
T Consensus 149 i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~ 226 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPE 226 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCH
T ss_pred CeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCH
Confidence 899999999886 444444544 489999999999877664 4566799999999997664 55565
Q ss_pred H-HHHHHhhCC-----------CCceEEEEEeeC-CHhHH-HHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchH
Q 015098 202 Q-IYDIFQLLP-----------AKVQVGVFSATM-PPEAL-EITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKL 267 (413)
Q Consensus 202 ~-~~~~~~~~~-----------~~~~~i~~SaT~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (413)
. +..++..++ ...|++++|||+ +.... ......+. +..........++.+.+... .+.
T Consensus 227 ~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~----~k~ 298 (1104)
T 4ddu_A 227 EIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS----RSK 298 (1104)
T ss_dssp HHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC----CCH
T ss_pred HHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec----CHH
Confidence 6 777777665 788999999994 43322 22333332 22233344556677776655 255
Q ss_pred HHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeE-EecCCCCHHHHHHHHHHHhcCCCcEEEE----cCCCCCC
Q 015098 268 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVS-ATHGDMDQNTRDIIMREFRSGSSRVLIT----TDLLARG 342 (413)
Q Consensus 268 ~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~vli~----t~~~~~G 342 (413)
..+..++.. .++++||||++++.++.+++.|+..|+.+. .+||. |.+ ++.|++|+.+|||| |+++++|
T Consensus 299 ~~L~~ll~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarG 371 (1104)
T 4ddu_A 299 EKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRG 371 (1104)
T ss_dssp HHHHHHHHH-HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCS
T ss_pred HHHHHHHHh-cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEec
Confidence 666666666 348999999999999999999999999998 99982 455 99999999999999 9999999
Q ss_pred CCCCC-CcEEEEccCCC---------------------------------------------------------------
Q 015098 343 IDVQQ-VSLVINYDLPT--------------------------------------------------------------- 358 (413)
Q Consensus 343 ~d~~~-~~~vi~~~~~~--------------------------------------------------------------- 358 (413)
+|+|+ +++||++|.|.
T Consensus 372 IDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~ 451 (1104)
T 4ddu_A 372 VDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVK 451 (1104)
T ss_dssp CCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEE
T ss_pred CcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEec
Confidence 99999 99999999998
Q ss_pred ---------ChhhHHHhhhhccCCCCcc--eEEEEeccCcHHHHHHHHHHhc
Q 015098 359 ---------QPENYLHRIGRSGRFGRKG--VAINFVTRDDERMLFDIQKFYN 399 (413)
Q Consensus 359 ---------s~~~~~Q~~GR~~R~g~~~--~~~~~~~~~~~~~~~~~~~~~~ 399 (413)
+..+|+||.||+||.|..| .++.++..+|.+.+..+++.++
T Consensus 452 ~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 452 DEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp TTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred CCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 7779999999999976543 4566666688899999988886
No 31
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.7e-43 Score=363.88 Aligned_cols=321 Identities=19% Similarity=0.274 Sum_probs=253.0
Q ss_pred HHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhccc
Q 015098 56 YAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL 135 (413)
Q Consensus 56 ~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~ 135 (413)
+.+|+. | ++|.++++.+++|+++++.+|||||||+ +.++++..+.. .++++||++|+++|+.|+.+.+++++...
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--~~~~~lil~PtreLa~Q~~~~l~~l~~~~ 126 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--KGKRCYVIFPTSLLVIQAAETIRKYAEKA 126 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--TSCCEEEEESCHHHHHHHHHHHHHHHTTT
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--cCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 457998 9 9999999999999999999999999998 66666655543 24599999999999999999999998877
Q ss_pred Cc----EEEEEEcCcchHHHH---HHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHh
Q 015098 136 GV----KVHACVGGTSVREDQ---RILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ 208 (413)
Q Consensus 136 ~~----~~~~~~~~~~~~~~~---~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~ 208 (413)
++ .+..++|+....... ..+.. ++|+|+||+.|.+++.+ +.++++||+||||++.+ +...+..+..
T Consensus 127 ~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~~i~~ 199 (1054)
T 1gku_B 127 GVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVDKLLH 199 (1054)
T ss_dssp CCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHHHHHH
T ss_pred CCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHHHHHH
Confidence 77 889999988776532 22334 89999999999887665 55789999999999987 4577777777
Q ss_pred hCC-----------CCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhh
Q 015098 209 LLP-----------AKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL 277 (413)
Q Consensus 209 ~~~-----------~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (413)
.++ ...|++++|||+++. ......++..+..+..........++.+.+.. ..+...+..+++..
T Consensus 200 ~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~----~~k~~~L~~ll~~~ 274 (1054)
T 1gku_B 200 LLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVN----DESISTLSSILEKL 274 (1054)
T ss_dssp HTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEES----CCCTTTTHHHHTTS
T ss_pred HhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEec----hhHHHHHHHHHhhc
Confidence 663 467889999998876 32222222222222223333444566666552 33555566666654
Q ss_pred cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEE----cCCCCCCCCCCCC-cEEE
Q 015098 278 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT----TDLLARGIDVQQV-SLVI 352 (413)
Q Consensus 278 ~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~----t~~~~~G~d~~~~-~~vi 352 (413)
++++||||++++.++.+++.|+.. ..+..+||++ ..+++.|++|+.+|||| |+++++|+|+|++ ++||
T Consensus 275 -~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI 347 (1054)
T 1gku_B 275 -GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAV 347 (1054)
T ss_dssp -CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEE
T ss_pred -CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEE
Confidence 578999999999999999999988 8999999998 47889999999999999 8999999999995 9999
Q ss_pred EccCC-----------------------------------------------------------------------CChh
Q 015098 353 NYDLP-----------------------------------------------------------------------TQPE 361 (413)
Q Consensus 353 ~~~~~-----------------------------------------------------------------------~s~~ 361 (413)
+++.| .+..
T Consensus 348 ~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 427 (1054)
T 1gku_B 348 FVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLR 427 (1054)
T ss_dssp EESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHH
T ss_pred EeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHH
Confidence 99999 7899
Q ss_pred hHHHhhhhccCCCCcc--eEEEEeccCcHHHHHHHHHHhcc
Q 015098 362 NYLHRIGRSGRFGRKG--VAINFVTRDDERMLFDIQKFYNV 400 (413)
Q Consensus 362 ~~~Q~~GR~~R~g~~~--~~~~~~~~~~~~~~~~~~~~~~~ 400 (413)
.|+||+||+||.|..| .+++++..++...+..+++.++.
T Consensus 428 ~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 428 TYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 9999999999987775 58888888899999999988884
No 32
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.6e-42 Score=351.95 Aligned_cols=310 Identities=17% Similarity=0.247 Sum_probs=243.6
Q ss_pred CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015098 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
++| .|+++|.++++.+.+|+++++.+|||||||+++++++......+ .+++|++|+++|+.|+++.+.++.. +.
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g---~~vlvl~PtraLa~Q~~~~l~~~~~--~~ 109 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNM---TKTIYTSPIKALSNQKFRDFKETFD--DV 109 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTT---CEEEEEESCGGGHHHHHHHHHTTC----C
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHHcC--CC
Confidence 455 68999999999999999999999999999999988887765433 4899999999999999999998653 57
Q ss_pred EEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEE
Q 015098 138 KVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVG 217 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i 217 (413)
.+..++|+.... ..++|+|+||+.|.+.+......+.++++||+||+|++.+.++...+..++..++...+++
T Consensus 110 ~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iI 182 (997)
T 4a4z_A 110 NIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFI 182 (997)
T ss_dssp CEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEE
T ss_pred eEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEE
Confidence 788888876533 3479999999999998887777788899999999999998888888999999999999999
Q ss_pred EEEeeCCHhHHHHHHHhc---CCCEEEEecCCcccccCeEEEEE------------------------------------
Q 015098 218 VFSATMPPEALEITRKFM---NKPVRILVKRDELTLEGIKQFYV------------------------------------ 258 (413)
Q Consensus 218 ~~SaT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 258 (413)
++|||+++.. ++..++. .....+..... .+..+.+.+.
T Consensus 183 lLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~--r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 259 (997)
T 4a4z_A 183 LLSATVPNTY-EFANWIGRTKQKNIYVISTPK--RPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAP 259 (997)
T ss_dssp EEECCCTTHH-HHHHHHHHHHTCCEEEEECSS--CSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--------
T ss_pred EEcCCCCChH-HHHHHHhcccCCceEEEecCC--CCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccc
Confidence 9999987543 3333222 12222222111 1111111110
Q ss_pred --------------------------------------------------------EeccccchHHHHHHHHHhhcccce
Q 015098 259 --------------------------------------------------------NVEKEEWKLETLCDLYETLAITQS 282 (413)
Q Consensus 259 --------------------------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~ 282 (413)
...........+...+......++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~ 339 (997)
T 4a4z_A 260 SKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPM 339 (997)
T ss_dssp ---------------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCE
Confidence 000112235566667777677899
Q ss_pred EEEEccHHHHHHHHHHhhhCCC---------------------------------------eeEEecCCCCHHHHHHHHH
Q 015098 283 VIFVNTRRKVDWLTDKMRSRDH---------------------------------------TVSATHGDMDQNTRDIIMR 323 (413)
Q Consensus 283 lif~~~~~~~~~l~~~L~~~~~---------------------------------------~~~~~~~~~~~~~r~~~~~ 323 (413)
||||++++.++.++..|...+. .+..+||++++.+|..+++
T Consensus 340 IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~ 419 (997)
T 4a4z_A 340 VVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 419 (997)
T ss_dssp EEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHH
Confidence 9999999999999999977655 5789999999999999999
Q ss_pred HHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCC---------ChhhHHHhhhhccCCCC--cceEEEEec
Q 015098 324 EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT---------QPENYLHRIGRSGRFGR--KGVAINFVT 384 (413)
Q Consensus 324 ~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~---------s~~~~~Q~~GR~~R~g~--~~~~~~~~~ 384 (413)
.|.+|.++|||||+++++|+|+|+ ..||+.+.+. |..+|.||+||+||.|. .|.|++++.
T Consensus 420 ~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 420 LFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 999999999999999999999999 6666655554 99999999999999984 577777773
No 33
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.2e-43 Score=353.96 Aligned_cols=322 Identities=17% Similarity=0.219 Sum_probs=221.5
Q ss_pred CCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCC---ceeEEEEcCcHHHHHHH-HHHHHHhhcccCc
Q 015098 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV---QCQALVLAPTRELAQQI-EKVMRALGDYLGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~liv~P~~~l~~q~-~~~~~~~~~~~~~ 137 (413)
.|+++|.++++.+++|+++++.+|||+|||++++++++..+..... ++++||++|+++|+.|| .+.++++... ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 7999999999999999999999999999999999999887755422 24899999999999999 9999998764 47
Q ss_pred EEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHH------HcCCCCCCcceEEEeccchHHhccC-cHHHHHHHHhh-
Q 015098 138 KVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDML------RRQSLRPDYIKMFVLDEADEMLSRG-FKDQIYDIFQL- 209 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~------~~~~~~~~~~~~iV~DE~h~~~~~~-~~~~~~~~~~~- 209 (413)
.+..++|+.............++|+|+||+.|.+.+ ......+.++++||+||||++.... +...+...+..
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~ 165 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 165 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHH
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhh
Confidence 888888887655444445567899999999999888 4445667889999999999875432 33333222221
Q ss_pred ---C---------CCCceEEEEEeeCCHh-----------HHHHHHHhc------------------CCCEEEEecCCcc
Q 015098 210 ---L---------PAKVQVGVFSATMPPE-----------ALEITRKFM------------------NKPVRILVKRDEL 248 (413)
Q Consensus 210 ---~---------~~~~~~i~~SaT~~~~-----------~~~~~~~~~------------------~~~~~~~~~~~~~ 248 (413)
. .+.++++++||||... .......+. ..+..........
T Consensus 166 ~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~ 245 (699)
T 4gl2_A 166 LKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADAT 245 (699)
T ss_dssp HHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC--
T ss_pred hcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccc
Confidence 1 1467899999999862 111111111 1111111000000
Q ss_pred ccc-----------------Ce---EE-----------------------------------------------------
Q 015098 249 TLE-----------------GI---KQ----------------------------------------------------- 255 (413)
Q Consensus 249 ~~~-----------------~~---~~----------------------------------------------------- 255 (413)
... .+ ..
T Consensus 246 ~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (699)
T 4gl2_A 246 REDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTH 325 (699)
T ss_dssp ---CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00 00
Q ss_pred ---------------------EEEEecc-------------------------ccchHHHHHHHHH----hhc-ccceEE
Q 015098 256 ---------------------FYVNVEK-------------------------EEWKLETLCDLYE----TLA-ITQSVI 284 (413)
Q Consensus 256 ---------------------~~~~~~~-------------------------~~~~~~~l~~~~~----~~~-~~~~li 284 (413)
....... ...+...+..++. ... ++++||
T Consensus 326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IV 405 (699)
T 4gl2_A 326 LETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGII 405 (699)
T ss_dssp HHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEE
T ss_pred HHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 0000000 0011111222222 223 689999
Q ss_pred EEccHHHHHHHHHHhhhC------CCeeEEecCC--------CCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcE
Q 015098 285 FVNTRRKVDWLTDKMRSR------DHTVSATHGD--------MDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 350 (413)
Q Consensus 285 f~~~~~~~~~l~~~L~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~ 350 (413)
||+++..++.+++.|+.. |..+..+||+ ++..+|.++++.|++|+.+|||||+++++|+|+|++++
T Consensus 406 F~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~ 485 (699)
T 4gl2_A 406 FTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNI 485 (699)
T ss_dssp ECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCC
T ss_pred EECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCE
Confidence 999999999999999987 8999999999 99999999999999999999999999999999999999
Q ss_pred EEEccCCCChhhHHHhhhhccCCCCcceEEEEeccC
Q 015098 351 VINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 351 vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 386 (413)
||++++|+|+..|.||+||+||.| +.++++....
T Consensus 486 VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~ 519 (699)
T 4gl2_A 486 VIRYGLVTNEIAMVQARGRARADE--STYVLVAHSG 519 (699)
T ss_dssp CEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESS
T ss_pred EEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCC
Confidence 999999999999999999987654 3344343333
No 34
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.5e-43 Score=345.72 Aligned_cols=321 Identities=19% Similarity=0.258 Sum_probs=240.5
Q ss_pred HHHHHHHHHCCCCCCcHHHHhhhhhhhcC------CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHH
Q 015098 49 ENLLRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQ 122 (413)
Q Consensus 49 ~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~ 122 (413)
+.+.+.++.++| .|+++|.++++.+.++ .++++.+|||||||++++++++..+..+. +++|++|+++|+.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~---qvlvlaPtr~La~ 431 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGF---QTAFMVPTSILAI 431 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTS---CEEEECSCHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCC---eEEEEeCcHHHHH
Confidence 455666788999 9999999999998875 58999999999999999999998876543 9999999999999
Q ss_pred HHHHHHHHhhcccCcEEEEEEcCcchHHHHHH---H-HcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccC
Q 015098 123 QIEKVMRALGDYLGVKVHACVGGTSVREDQRI---L-QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG 198 (413)
Q Consensus 123 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~ 198 (413)
|+++.+.++....++++..++|+......... + ...++|+|+||+.+.+ ...+.++++||+||+|++....
T Consensus 432 Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~q 506 (780)
T 1gm5_A 432 QHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQ 506 (780)
T ss_dssp HHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----
T ss_pred HHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHH
Confidence 99999999988888999999998876554322 2 3458999999987743 3557789999999999863221
Q ss_pred cHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHh--
Q 015098 199 FKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET-- 276 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 276 (413)
...+.......++++|||||.+...... .++................+...+. . ....+.+...+..
T Consensus 507 -----r~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~r~~i~~~~~---~-~~~~~~l~~~i~~~l 575 (780)
T 1gm5_A 507 -----REALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPGRKEVQTMLV---P-MDRVNEVYEFVRQEV 575 (780)
T ss_dssp ------CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSSCCCCEECCC---C-SSTHHHHHHHHHHHT
T ss_pred -----HHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCCCcceEEEEe---c-cchHHHHHHHHHHHH
Confidence 1112222346889999999987654433 2332211111111111112222211 1 1223333333332
Q ss_pred hcccceEEEEccH--------HHHHHHHHHhhh---CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCC
Q 015098 277 LAITQSVIFVNTR--------RKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDV 345 (413)
Q Consensus 277 ~~~~~~lif~~~~--------~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~ 345 (413)
..+++++|||+.. ..++.+++.|.. .+..+..+||+|+..+|..+++.|++|+++|||||+++++|+|+
T Consensus 576 ~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDi 655 (780)
T 1gm5_A 576 MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDV 655 (780)
T ss_dssp TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCC
T ss_pred hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccC
Confidence 2457899999965 457788888887 46789999999999999999999999999999999999999999
Q ss_pred CCCcEEEEccCCC-ChhhHHHhhhhccCCCCcceEEEEeccCcHH
Q 015098 346 QQVSLVINYDLPT-QPENYLHRIGRSGRFGRKGVAINFVTRDDER 389 (413)
Q Consensus 346 ~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 389 (413)
|++++||+++.|. +...+.|++||+||.|+.|.|++++.+.+..
T Consensus 656 P~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 656 PRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE 700 (780)
T ss_dssp TTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH
T ss_pred CCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH
Confidence 9999999999985 7889999999999999999999998854443
No 35
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.5e-40 Score=343.81 Aligned_cols=323 Identities=18% Similarity=0.225 Sum_probs=248.9
Q ss_pred cCCCCHHHHHHH-HHCCCCCCcHHHHhhhhhhhc----CC--cEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcC
Q 015098 44 AMGLQENLLRGI-YAYGFEKPSAIQQRGIVPFCK----GL--DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 116 (413)
Q Consensus 44 ~~~l~~~~~~~l-~~~~~~~~~~~Q~~~~~~i~~----~~--~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P 116 (413)
.++.+....+.+ ..+++ .+||+|.++++.+.+ |+ ++++++|||+|||++++.+++.....+ .+++|++|
T Consensus 585 ~~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g---~~vlvlvP 660 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH---KQVAVLVP 660 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT---CEEEEECS
T ss_pred CCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC---CeEEEEec
Confidence 345666666666 45677 579999999999886 65 899999999999999988887765543 39999999
Q ss_pred cHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH---H-HcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccch
Q 015098 117 TRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI---L-QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 192 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h 192 (413)
|++|+.|+++.+.++....+.++..+++.......... + ...++|+|+||+.+. ....+.++++||+||+|
T Consensus 661 t~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH 735 (1151)
T 2eyq_A 661 TTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEH 735 (1151)
T ss_dssp SHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGG
T ss_pred hHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechH
Confidence 99999999999999887778888888876554443222 2 346899999997653 34567889999999999
Q ss_pred HHhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHH
Q 015098 193 EMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCD 272 (413)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 272 (413)
++ .......+..++...+++++||||.+.........+.... ...........+...+..... ......
T Consensus 736 ~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~--~i~~~~~~r~~i~~~~~~~~~----~~i~~~ 804 (1151)
T 2eyq_A 736 RF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS--IIATPPARRLAVKTFVREYDS----MVVREA 804 (1151)
T ss_dssp GS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEE--ECCCCCCBCBCEEEEEEECCH----HHHHHH
T ss_pred hc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCce--EEecCCCCccccEEEEecCCH----HHHHHH
Confidence 95 2333444455556789999999998776655544433222 122222222334444333222 122222
Q ss_pred HHHh-hcccceEEEEccHHHHHHHHHHhhhC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCc
Q 015098 273 LYET-LAITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 349 (413)
Q Consensus 273 ~~~~-~~~~~~lif~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~ 349 (413)
++.. ..+++++|||++++.++.+++.|++. +..+..+||+++..+|.++++.|.+|+++|||||+++++|+|+|+++
T Consensus 805 il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~ 884 (1151)
T 2eyq_A 805 ILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN 884 (1151)
T ss_dssp HHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEE
T ss_pred HHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCc
Confidence 2222 24679999999999999999999887 78899999999999999999999999999999999999999999999
Q ss_pred EEEEccC-CCChhhHHHhhhhccCCCCcceEEEEeccC
Q 015098 350 LVINYDL-PTQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 350 ~vi~~~~-~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 386 (413)
+||+++. +++..+|.|++||+||.|+.|.|++++.+.
T Consensus 885 ~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 885 TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp EEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred EEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 9999988 578999999999999999999999998765
No 36
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=6.1e-41 Score=355.99 Aligned_cols=340 Identities=16% Similarity=0.194 Sum_probs=254.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhhhhhhc-CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHH
Q 015098 47 LQENLLRGIYAYGFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIE 125 (413)
Q Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~ 125 (413)
+.....+.+...+|..++|+|.++++.+.. +++++++||||||||+++.+++++.+..... .+++|++|+++|+.|.+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~-~kavyi~P~raLa~q~~ 989 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSE-GRCVYITPMEALAEQVY 989 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTT-CCEEEECSCHHHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCC-CEEEEEcChHHHHHHHH
Confidence 555667777778899999999999999875 6789999999999999999999998876543 48999999999999999
Q ss_pred HHHHH-hhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCC--CCCcceEEEeccchHHhccCcHHH
Q 015098 126 KVMRA-LGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL--RPDYIKMFVLDEADEMLSRGFKDQ 202 (413)
Q Consensus 126 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~--~~~~~~~iV~DE~h~~~~~~~~~~ 202 (413)
+.+.+ +....+.++..++|+....... ..+++|+||||++|..++++... .+.++++||+||+|.+.+. .+..
T Consensus 990 ~~~~~~f~~~~g~~V~~ltGd~~~~~~~---~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg~~ 1065 (1724)
T 4f92_B 990 MDWYEKFQDRLNKKVVLLTGETSTDLKL---LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGPV 1065 (1724)
T ss_dssp HHHHHHHTTTSCCCEEECCSCHHHHHHH---HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-THHH
T ss_pred HHHHHHhchhcCCEEEEEECCCCcchhh---cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CCcc
Confidence 99876 5556789999999886643321 23579999999999877765332 2567899999999988764 4544
Q ss_pred HHHHH-------hhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccch------HHH
Q 015098 203 IYDIF-------QLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWK------LET 269 (413)
Q Consensus 203 ~~~~~-------~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 269 (413)
+..++ ...+.+.|++++|||.++ ..++..++..............++..+...+......... ...
T Consensus 1066 le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~ 1144 (1724)
T 4f92_B 1066 LEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKP 1144 (1724)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcch
Confidence 44333 345678999999999974 4455555544332233333334444455544443332211 122
Q ss_pred HHHHHH-hhcccceEEEEccHHHHHHHHHHhhhC----------------------------------CCeeEEecCCCC
Q 015098 270 LCDLYE-TLAITQSVIFVNTRRKVDWLTDKMRSR----------------------------------DHTVSATHGDMD 314 (413)
Q Consensus 270 l~~~~~-~~~~~~~lif~~~~~~~~~l~~~L~~~----------------------------------~~~~~~~~~~~~ 314 (413)
+...+. ...++++||||+++..++.++..|... ..++..+|++++
T Consensus 1145 ~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~ 1224 (1724)
T 4f92_B 1145 VYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLS 1224 (1724)
T ss_dssp HHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSC
T ss_pred HHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCC
Confidence 223333 335679999999999998877665321 245889999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEE----c------cCCCChhhHHHhhhhccCCCC--cceEEEE
Q 015098 315 QNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----Y------DLPTQPENYLHRIGRSGRFGR--KGVAINF 382 (413)
Q Consensus 315 ~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~------~~~~s~~~~~Q~~GR~~R~g~--~~~~~~~ 382 (413)
+.+|..+++.|++|.++|||||++++.|+|+|...+||. + ..|.+..+|.||+||+||.|. .|.++++
T Consensus 1225 ~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll 1304 (1724)
T 4f92_B 1225 PMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIM 1304 (1724)
T ss_dssp HHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEE
Confidence 999999999999999999999999999999999888873 2 235689999999999999987 5889988
Q ss_pred eccCcHHHHH
Q 015098 383 VTRDDERMLF 392 (413)
Q Consensus 383 ~~~~~~~~~~ 392 (413)
....+...++
T Consensus 1305 ~~~~~~~~~~ 1314 (1724)
T 4f92_B 1305 CQGSKKDFFK 1314 (1724)
T ss_dssp EEGGGHHHHH
T ss_pred ecchHHHHHH
Confidence 8777665543
No 37
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=9.7e-41 Score=323.96 Aligned_cols=322 Identities=19% Similarity=0.221 Sum_probs=242.3
Q ss_pred HCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccC
Q 015098 57 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG 136 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
..|+ +|+|.|..+++.+++|+ +..++||+|||+++.+|++..... +..++|++||++||.|.++++..+...+|
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---g~~vlVltptreLA~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---GKGVHVVTVNEYLASRDAEQMGKIFEFLG 152 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 4799 99999999999999999 999999999999999999743332 34899999999999999999999999999
Q ss_pred cEEEEEEcCcchHHHHHHHHcCCcEEEEccHHH-HHHHHcC------CCCCCcceEEEeccchHHh-ccC----------
Q 015098 137 VKVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQ------SLRPDYIKMFVLDEADEML-SRG---------- 198 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~~------~~~~~~~~~iV~DE~h~~~-~~~---------- 198 (413)
+++..+.|+.+...... ..+++|+|+||+.| ++++... ...+..+.++|+||||+++ +.+
T Consensus 153 l~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~ 230 (844)
T 1tf5_A 153 LTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQA 230 (844)
T ss_dssp CCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEE
T ss_pred CeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCc
Confidence 99999999987544332 34589999999999 6666543 3456778999999999987 553
Q ss_pred -----cHHHHHHHHhhCCC---------CceEE-----------------EEEeeCCH---hHHHHHH--HhcCCC--EE
Q 015098 199 -----FKDQIYDIFQLLPA---------KVQVG-----------------VFSATMPP---EALEITR--KFMNKP--VR 240 (413)
Q Consensus 199 -----~~~~~~~~~~~~~~---------~~~~i-----------------~~SaT~~~---~~~~~~~--~~~~~~--~~ 240 (413)
+...+..+...++. ..|+. ++|||.+. .+...++ .++... ..
T Consensus 231 ~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYi 310 (844)
T 1tf5_A 231 AKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYV 310 (844)
T ss_dssp ECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEE
T ss_pred ccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceE
Confidence 45667777777752 45555 66777542 1111111 111100 00
Q ss_pred E------Eec----------------------------------------------------------------------
Q 015098 241 I------LVK---------------------------------------------------------------------- 244 (413)
Q Consensus 241 ~------~~~---------------------------------------------------------------------- 244 (413)
+ .+.
T Consensus 311 v~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l 390 (844)
T 1tf5_A 311 VEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNM 390 (844)
T ss_dssp EETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred EecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCC
Confidence 0 000
Q ss_pred -----CCcccccCeEEEEEEeccccchHHHHHHHHHh--hcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHH
Q 015098 245 -----RDELTLEGIKQFYVNVEKEEWKLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNT 317 (413)
Q Consensus 245 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 317 (413)
+.........+......+...+...+...+.. ..+.++||||++++.++.+++.|...|+.+..+||++.+.+
T Consensus 391 ~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rE 470 (844)
T 1tf5_A 391 QVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHERE 470 (844)
T ss_dssp CEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHH
T ss_pred ceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHH
Confidence 00000000000001122345577778777754 24568999999999999999999999999999999998888
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCCCCCCCC--------CCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcH
Q 015098 318 RDIIMREFRSGSSRVLITTDLLARGIDVQ--------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 388 (413)
Q Consensus 318 r~~~~~~f~~~~~~vli~t~~~~~G~d~~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 388 (413)
+..+.+.++.| .|+|||+++++|+|++ ++.+||+++.|.+...|.||+||+||.|.+|.+++|++..|.
T Consensus 471 r~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 471 AQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp HHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred HHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 77666555544 6999999999999999 788999999999999999999999999999999999998764
No 38
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=7.3e-42 Score=330.46 Aligned_cols=310 Identities=17% Similarity=0.142 Sum_probs=230.2
Q ss_pred CCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEE
Q 015098 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVH 140 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
.+|+++|.++++.+.+++++++++|||+|||++++.++...+.... +++||++|+++|+.||.+.+.++....+..+.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~--~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~ 189 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE--GKILIIVPTTALTTQMADDFVDYRLFSHAMIK 189 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCS--SEEEEEESSHHHHHHHHHHHHHTTSSCGGGEE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCC--CeEEEEECcHHHHHHHHHHHHHhhcCCccceE
Confidence 3899999999999999999999999999999999888877665332 39999999999999999999998665566777
Q ss_pred EEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015098 141 ACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
.++++...... .....+|+|+||+.+... ....+.++++||+||||++.. ..+..++..++...+++++|
T Consensus 190 ~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lS 259 (510)
T 2oca_A 190 KIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLS 259 (510)
T ss_dssp ECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEE
T ss_pred EEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEE
Confidence 77777654332 235689999999976532 234466789999999999754 45667778887788999999
Q ss_pred eeCCHhHHHHH--HHhcCCCEEEEecCC------cccccCeEEEEEEeccc--------------------cchHHHHHH
Q 015098 221 ATMPPEALEIT--RKFMNKPVRILVKRD------ELTLEGIKQFYVNVEKE--------------------EWKLETLCD 272 (413)
Q Consensus 221 aT~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~ 272 (413)
|||+....... ..+.+ +........ ...+..+.......+.. ..+...+.+
T Consensus 260 ATp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (510)
T 2oca_A 260 GSLRDGKANIMQYVGMFG-EIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAK 338 (510)
T ss_dssp SCGGGCSSCHHHHHHHHC-SEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHH
T ss_pred eCCCCCcccHHHhHHhhC-CeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHH
Confidence 99976532211 11222 211111111 01111111111111110 112333444
Q ss_pred HHHhh---cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-CCCCCCCCCCCC
Q 015098 273 LYETL---AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITT-DLLARGIDVQQV 348 (413)
Q Consensus 273 ~~~~~---~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t-~~~~~G~d~~~~ 348 (413)
++... .+++++||++ .+.++.+++.|.+.+..+..+||+++..+|.++++.|++|+.+||||| +++++|+|+|++
T Consensus 339 ~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v 417 (510)
T 2oca_A 339 LAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNL 417 (510)
T ss_dssp HHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSE
T ss_pred HHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccC
Confidence 44443 3345555555 889999999999988899999999999999999999999999999999 999999999999
Q ss_pred cEEEEccCCCChhhHHHhhhhccCCCCcceEEEEec
Q 015098 349 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT 384 (413)
Q Consensus 349 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~ 384 (413)
++||+++.|++...|.|++||+||.|+.+.++++++
T Consensus 418 ~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 418 HHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999998764444444
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.1e-41 Score=359.48 Aligned_cols=330 Identities=18% Similarity=0.287 Sum_probs=245.4
Q ss_pred CCCCCcHHHHhhhhhhhc-CCcEEEeCCCCCcchHHhHHHHHHccccC--------CCceeEEEEcCcHHHHHHHHHHHH
Q 015098 59 GFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYG--------LVQCQALVLAPTRELAQQIEKVMR 129 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~i~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~--------~~~~~~liv~P~~~l~~q~~~~~~ 129 (413)
||..++++|+++++.++. ++|++++||||||||+++.+++++.+... ..+.++||++|+++|+.|..+.++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 788999999999998764 88999999999999999999999888642 235589999999999999999999
Q ss_pred HhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCC--CCCcceEEEeccchHHhccCcHHHHHHHH
Q 015098 130 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL--RPDYIKMFVLDEADEMLSRGFKDQIYDIF 207 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~--~~~~~~~iV~DE~h~~~~~~~~~~~~~~~ 207 (413)
+.....|+++..++|+....... ..+++|+|||||++..++++... .+..+++||+||+|.+.+ ..+..++.++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 98888899999999987643221 24589999999999766654322 256799999999997765 4555555443
Q ss_pred h-------hCCCCceEEEEEeeCCHhHHHHHHHhcCCC-EEEEecCCcccccCeEEEEEEecccc--chHHHH----HHH
Q 015098 208 Q-------LLPAKVQVGVFSATMPPEALEITRKFMNKP-VRILVKRDELTLEGIKQFYVNVEKEE--WKLETL----CDL 273 (413)
Q Consensus 208 ~-------~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l----~~~ 273 (413)
. ..+...|+|++|||.++ ..+...++...+ ..........+|-.+.+.+....... ...+.+ ...
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEK 310 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHH
Confidence 3 34678899999999874 334444332221 11222223334444555443333221 112222 222
Q ss_pred HHh-hcccceEEEEccHHHHHHHHHHhhhC-------------------------------------CCeeEEecCCCCH
Q 015098 274 YET-LAITQSVIFVNTRRKVDWLTDKMRSR-------------------------------------DHTVSATHGDMDQ 315 (413)
Q Consensus 274 ~~~-~~~~~~lif~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~~~~~~ 315 (413)
+.. ..++++||||++++.++.+++.|.+. ..+++++||+++.
T Consensus 311 v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~ 390 (1724)
T 4f92_B 311 IMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTR 390 (1724)
T ss_dssp HTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCT
T ss_pred HHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCH
Confidence 222 24568999999998888887776431 2358899999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEE----cc------CCCChhhHHHhhhhccCCCC--cceEEEEe
Q 015098 316 NTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD------LPTQPENYLHRIGRSGRFGR--KGVAINFV 383 (413)
Q Consensus 316 ~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~------~~~s~~~~~Q~~GR~~R~g~--~~~~~~~~ 383 (413)
.+|..+++.|++|.++||+||++++.|+|+|..++||. ++ .|.+..+|.||+|||||.|. .|.++++.
T Consensus 391 ~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~ 470 (1724)
T 4f92_B 391 VDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILIT 470 (1724)
T ss_dssp HHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEe
Confidence 99999999999999999999999999999999999884 33 35689999999999999875 58899888
Q ss_pred ccCcHHHHHH
Q 015098 384 TRDDERMLFD 393 (413)
Q Consensus 384 ~~~~~~~~~~ 393 (413)
.+++...+..
T Consensus 471 ~~~~~~~~~~ 480 (1724)
T 4f92_B 471 SHGELQYYLS 480 (1724)
T ss_dssp ESTTCCHHHH
T ss_pred cchhHHHHHH
Confidence 8876554443
No 40
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.1e-40 Score=318.99 Aligned_cols=293 Identities=19% Similarity=0.257 Sum_probs=221.5
Q ss_pred CCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcE-EE
Q 015098 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVK-VH 140 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~-~~ 140 (413)
.|+|+|.++++.+.+++++++++|||+|||++++.++... +.++||+||+++|+.||.+.+.++ +.. +.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~ 162 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC----CCcceE
Confidence 7999999999999999999999999999999998887764 349999999999999999999884 667 77
Q ss_pred EEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015098 141 ACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
.++|+.. ...+|+|+||+.+....... ..++++||+||+|++.+..+.. +...+ ...+++++|
T Consensus 163 ~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~l~lS 225 (472)
T 2fwr_A 163 EFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLT 225 (472)
T ss_dssp EBSSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEEEEEE
T ss_pred EECCCcC---------CcCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeEEEEe
Confidence 7777665 24789999999987665421 2348999999999998877654 44444 367899999
Q ss_pred eeCCHh-------------------HHHHHHHhcCCCEE--EEecCCcc------------------------cccCeEE
Q 015098 221 ATMPPE-------------------ALEITRKFMNKPVR--ILVKRDEL------------------------TLEGIKQ 255 (413)
Q Consensus 221 aT~~~~-------------------~~~~~~~~~~~~~~--~~~~~~~~------------------------~~~~~~~ 255 (413)
|||... ..++...++..+.. +....... ....+..
T Consensus 226 ATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 305 (472)
T 2fwr_A 226 ATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNK 305 (472)
T ss_dssp SCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTT
T ss_pred cCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHH
Confidence 999731 11111111111111 00000000 0000000
Q ss_pred EEE--------------------EeccccchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCH
Q 015098 256 FYV--------------------NVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQ 315 (413)
Q Consensus 256 ~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 315 (413)
.+. .......+...+.+++....++++||||++.+.++.+++.|. +..+||+++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~ 380 (472)
T 2fwr_A 306 IVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSR 380 (472)
T ss_dssp TTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCS
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCH
Confidence 000 000122356778888888778899999999999999999983 6678999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCc---ceEEEEeccC
Q 015098 316 NTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK---GVAINFVTRD 386 (413)
Q Consensus 316 ~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~---~~~~~~~~~~ 386 (413)
.+|.++++.|++|+++|||||+++++|+|+|++++||+++.|+++..|.|++||+||.|+. ..++.+++.+
T Consensus 381 ~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 381 EEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp HHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred HHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999854 3455566654
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=4.5e-41 Score=326.95 Aligned_cols=322 Identities=17% Similarity=0.123 Sum_probs=232.8
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHH
Q 015098 45 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQI 124 (413)
Q Consensus 45 ~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~ 124 (413)
+++++.+.+.+... ...++|.|..+++.+.+|+++++.+|||||||+++++++++.+.. .+.++||++|+++|+.|+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--~~~~vLvl~PtreLa~Qi 231 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEM 231 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEcChHHHHHHH
Confidence 45666655555443 367888888899999999999999999999999998888877654 235999999999999999
Q ss_pred HHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHH
Q 015098 125 EKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIY 204 (413)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~ 204 (413)
.+.+.. ..+. ..+... . .....+..+.++|.+.+.+.+... ..+.++++||+||||++ +.++...+.
T Consensus 232 ~~~l~~------~~v~-~~~~~l-~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~ 298 (618)
T 2whx_A 232 EEALRG------LPIR-YQTPAV-K---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARG 298 (618)
T ss_dssp HHHTTT------SCEE-ECCTTS-S---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHH
T ss_pred HHHhcC------Ccee-Eecccc-e---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHH
Confidence 988763 2232 111110 0 011223467788888887666554 45778999999999997 555556666
Q ss_pred HHHhhCC-CCceEEEEEeeCCHhHHHHHHHhcC-CCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhhcccce
Q 015098 205 DIFQLLP-AKVQVGVFSATMPPEALEITRKFMN-KPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQS 282 (413)
Q Consensus 205 ~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 282 (413)
.+...++ ...|++++|||++..... +.. .+..+...... +.. ....+...+.. ..+++
T Consensus 299 ~i~~~l~~~~~q~il~SAT~~~~~~~----~~~~~~~~~~v~~~~-------------~~~--~~~~ll~~l~~-~~~~~ 358 (618)
T 2whx_A 299 YISTRVEMGEAAAIFMTATPPGSTDP----FPQSNSPIEDIEREI-------------PER--SWNTGFDWITD-YQGKT 358 (618)
T ss_dssp HHHHHHHHTSCEEEEECSSCTTCCCS----SCCCSSCEEEEECCC-------------CSS--CCSSSCHHHHH-CCSCE
T ss_pred HHHHHhcccCccEEEEECCCchhhhh----hhccCCceeeecccC-------------CHH--HHHHHHHHHHh-CCCCE
Confidence 6666554 578999999999865322 221 22222211110 000 00111222222 35799
Q ss_pred EEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEE-----------
Q 015098 283 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV----------- 351 (413)
Q Consensus 283 lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~v----------- 351 (413)
||||++++.++.+++.|+..+..+..+||+ +|.++++.|++|+.+|||||+++++|+|++ +++|
T Consensus 359 LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~ 433 (618)
T 2whx_A 359 VWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVI 433 (618)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEE
T ss_pred EEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceeccee
Confidence 999999999999999999999999999985 688899999999999999999999999997 8888
Q ss_pred ---------EEccCCCChhhHHHhhhhccCCCC-cceEEEEec---cCcHHHHHHHHHHhccccccCCc
Q 015098 352 ---------INYDLPTQPENYLHRIGRSGRFGR-KGVAINFVT---RDDERMLFDIQKFYNVVIEELPS 407 (413)
Q Consensus 352 ---------i~~~~~~s~~~~~Q~~GR~~R~g~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 407 (413)
++++.|.+..+|+||+||+||.|. .|.++++++ +.|...+..+++.+.....++++
T Consensus 434 ~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~ 502 (618)
T 2whx_A 434 LTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPE 502 (618)
T ss_dssp ECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTT
T ss_pred cccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCc
Confidence 666779999999999999999975 899999998 77878888888877665444443
No 42
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=7.2e-39 Score=309.99 Aligned_cols=321 Identities=18% Similarity=0.200 Sum_probs=226.0
Q ss_pred CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015098 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|. +|++.|..+++.+++|+ +..++||+|||+++.+|++..... +..++|++||++||.|.++++..+...+++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---g~~vlVltPTreLA~Q~~e~~~~l~~~lgl 144 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAENNRPLFEFLGL 144 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---SSCCEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---CCcEEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 465 89999999999999998 999999999999999999854433 348999999999999999999999999999
Q ss_pred EEEEEEcCcchHHHHHHHHcCCcEEEEccHHH-HHHHHcCC------CCCCcceEEEeccchHHh-ccC-----------
Q 015098 138 KVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQS------LRPDYIKMFVLDEADEML-SRG----------- 198 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~~~------~~~~~~~~iV~DE~h~~~-~~~----------- 198 (413)
++..+.|+.+.... ....+++|+|+||+.| +++++.+. .....+.++|+||||+++ +.+
T Consensus 145 ~v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~ 222 (853)
T 2fsf_A 145 TVGINLPGMPAPAK--REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAE 222 (853)
T ss_dssp CEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC--
T ss_pred eEEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCc
Confidence 99999999875432 2334689999999999 78877542 456789999999999988 432
Q ss_pred ----cHHHHHHHHhhCCC--------------------CceEE------------------------EEEeeCCH---hH
Q 015098 199 ----FKDQIYDIFQLLPA--------------------KVQVG------------------------VFSATMPP---EA 227 (413)
Q Consensus 199 ----~~~~~~~~~~~~~~--------------------~~~~i------------------------~~SaT~~~---~~ 227 (413)
+...+..++..++. ..|+. ++|||.+. .+
T Consensus 223 ~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i 302 (853)
T 2fsf_A 223 DSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHV 302 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHH
Confidence 33455555555542 23332 67777542 11
Q ss_pred HHHH--HHhcC---------------------------------CC----EEEEecCCcccccCeE--------------
Q 015098 228 LEIT--RKFMN---------------------------------KP----VRILVKRDELTLEGIK-------------- 254 (413)
Q Consensus 228 ~~~~--~~~~~---------------------------------~~----~~~~~~~~~~~~~~~~-------------- 254 (413)
...+ ..++. .+ ..+.+.....+...+.
T Consensus 303 ~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~Gm 382 (853)
T 2fsf_A 303 TAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGM 382 (853)
T ss_dssp ------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcC
Confidence 1000 00000 00 0011111111111111
Q ss_pred --------------------------------EEEEEeccccchHHHHHHHHHhh--cccceEEEEccHHHHHHHHHHhh
Q 015098 255 --------------------------------QFYVNVEKEEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMR 300 (413)
Q Consensus 255 --------------------------------~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~L~ 300 (413)
+......+...|...+...+... .+.++||||+|++.++.+++.|+
T Consensus 383 TGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~ 462 (853)
T 2fsf_A 383 TGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELT 462 (853)
T ss_dssp ECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHH
Confidence 00012233456888888877543 45689999999999999999999
Q ss_pred hCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCC--------------------------------
Q 015098 301 SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV-------------------------------- 348 (413)
Q Consensus 301 ~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~-------------------------------- 348 (413)
..|+.+.++||+....++..+.+.|+.| .|+|||+++++|+|++..
T Consensus 463 ~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 540 (853)
T 2fsf_A 463 KAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAV 540 (853)
T ss_dssp HTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHH
T ss_pred HCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHH
Confidence 9999999999999888888888888877 699999999999999863
Q ss_pred -----cEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcH
Q 015098 349 -----SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 388 (413)
Q Consensus 349 -----~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 388 (413)
.+||+++.|.|...|.|++||+||.|.+|.+++|++..|.
T Consensus 541 ~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 541 LEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 6999999999999999999999999999999999988764
No 43
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=4e-38 Score=305.16 Aligned_cols=322 Identities=20% Similarity=0.260 Sum_probs=246.3
Q ss_pred HCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccC
Q 015098 57 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG 136 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
..|+ +|++.|..+++.+.+|+ +..++||+|||+++.+|++.....+ ..++|++||+.||.|.++++..+...+|
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g---~~v~VvTpTreLA~Qdae~m~~l~~~lG 180 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAG---NGVHIVTVNDYLAKRDSEWMGRVHRFLG 180 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTT---SCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 3688 99999999999999998 9999999999999999996433333 3899999999999999999999999999
Q ss_pred cEEEEEEcCcchHHHHHHHHcCCcEEEEccHHH-HHHHHcC------CCCCCcceEEEeccchHHh-cc-----------
Q 015098 137 VKVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQ------SLRPDYIKMFVLDEADEML-SR----------- 197 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~~------~~~~~~~~~iV~DE~h~~~-~~----------- 197 (413)
+++.++.|+.+...... ..+++|+|+||+.| +++++.. ......+.++|+||||+++ +.
T Consensus 181 Lsv~~i~gg~~~~~r~~--~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~ 258 (922)
T 1nkt_A 181 LQVGVILATMTPDERRV--AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPA 258 (922)
T ss_dssp CCEEECCTTCCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEEC
T ss_pred CeEEEEeCCCCHHHHHH--hcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCC
Confidence 99999999887543332 33589999999999 7777653 3556778999999999988 32
Q ss_pred ----CcHHHHHHHHhhCC---------CCceEE-----------------EEEeeCCH---hHHHHHH--HhcCCC----
Q 015098 198 ----GFKDQIYDIFQLLP---------AKVQVG-----------------VFSATMPP---EALEITR--KFMNKP---- 238 (413)
Q Consensus 198 ----~~~~~~~~~~~~~~---------~~~~~i-----------------~~SaT~~~---~~~~~~~--~~~~~~---- 238 (413)
++...+..+...++ ...|+. ++|||.+. .+...++ .++...
T Consensus 259 ~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYi 338 (922)
T 1nkt_A 259 DGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYI 338 (922)
T ss_dssp CCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEE
T ss_pred CcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhccccee
Confidence 35577888888887 567777 77888653 2211111 111110
Q ss_pred ----EEEEecC-----------------------------Ccccc-----------------------------------
Q 015098 239 ----VRILVKR-----------------------------DELTL----------------------------------- 250 (413)
Q Consensus 239 ----~~~~~~~-----------------------------~~~~~----------------------------------- 250 (413)
..+.+.. ...+.
T Consensus 339 V~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l 418 (922)
T 1nkt_A 339 VRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKL 418 (922)
T ss_dssp ECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred eecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCC
Confidence 0000000 00000
Q ss_pred ---------cCeE--EEEEEeccccchHHHHHHHHHhh--cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHH
Q 015098 251 ---------EGIK--QFYVNVEKEEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNT 317 (413)
Q Consensus 251 ---------~~~~--~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 317 (413)
+..+ +......+...+...+...+... .+.++||||+|++.++.+++.|+..|+.+.++||+....+
T Consensus 419 ~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rE 498 (922)
T 1nkt_A 419 GVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQE 498 (922)
T ss_dssp EEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHH
T ss_pred CeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHH
Confidence 0000 00011223445777777766543 4568999999999999999999999999999999988777
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCCCCCCCCCC-------------------------------------------------
Q 015098 318 RDIIMREFRSGSSRVLITTDLLARGIDVQQV------------------------------------------------- 348 (413)
Q Consensus 318 r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~------------------------------------------------- 348 (413)
+..+.+.|+.| .|+|||+++++|+|++..
T Consensus 499 a~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 576 (922)
T 1nkt_A 499 ATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIE 576 (922)
T ss_dssp HHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 77777777776 699999999999999964
Q ss_pred ---cEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcH
Q 015098 349 ---SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 388 (413)
Q Consensus 349 ---~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 388 (413)
.+||+++.|.|...|.|++||+||.|.+|.+.+|++..|.
T Consensus 577 ~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 577 AGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp TTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred cCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999998775
No 44
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=3.2e-39 Score=321.57 Aligned_cols=337 Identities=16% Similarity=0.206 Sum_probs=245.8
Q ss_pred hhhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhc-CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEE
Q 015098 36 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVL 114 (413)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv 114 (413)
+.+..+|+++++++.+.+.+...+ ..|.+.|..++..+.. +++++++||||||||+..-..+.........+.+++++
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl 146 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACT 146 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEE
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEec
Confidence 345778999999999999999888 6889999998888765 67899999999999984322222211111124479999
Q ss_pred cCcHHHHHHHHHHHHHhh-cccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchH
Q 015098 115 APTRELAQQIEKVMRALG-DYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 193 (413)
Q Consensus 115 ~P~~~l~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~ 193 (413)
+|+++++.|+.+.+.... ...+..+......... .....+|+++||+.+.+.+... ..+.++++||+||+|.
T Consensus 147 ~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~------~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 147 QPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK------TSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHE 219 (773)
T ss_dssp ESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE------CCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGG
T ss_pred CchHHHHHHHHHHHHHHhCCchhheecceeccccc------cCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccc
Confidence 999999999988775543 2223333222111110 1135789999999998877654 4578899999999996
Q ss_pred -HhccC-cHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccch---HH
Q 015098 194 -MLSRG-FKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWK---LE 268 (413)
Q Consensus 194 -~~~~~-~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 268 (413)
..+.. ....+..+.... +..+++++|||++.+ .+..++.....+...... ..+...+......... +.
T Consensus 220 R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~---~l~~~~~~~~vi~v~gr~---~pv~~~~~~~~~~~~~~~~l~ 292 (773)
T 2xau_A 220 RTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAE---KFQRYFNDAPLLAVPGRT---YPVELYYTPEFQRDYLDSAIR 292 (773)
T ss_dssp CCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH---HHHHHTTSCCEEECCCCC---CCEEEECCSSCCSCHHHHHHH
T ss_pred cccchHHHHHHHHHHHHhC-CCceEEEEeccccHH---HHHHHhcCCCcccccCcc---cceEEEEecCCchhHHHHHHH
Confidence 33322 223444454444 478999999999653 334455544334333222 2344444333332222 23
Q ss_pred HHHHHHHhhcccceEEEEccHHHHHHHHHHhhh-----------CCCeeEEecCCCCHHHHHHHHHHHh-----cCCCcE
Q 015098 269 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS-----------RDHTVSATHGDMDQNTRDIIMREFR-----SGSSRV 332 (413)
Q Consensus 269 ~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~-----~~~~~v 332 (413)
.+..+......+++||||++++.++.+++.|.+ .+..+..+||+++..+|.++++.|. +|..+|
T Consensus 293 ~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kV 372 (773)
T 2xau_A 293 TVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKV 372 (773)
T ss_dssp HHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEE
T ss_pred HHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEE
Confidence 344444444678999999999999999999975 5778999999999999999999999 999999
Q ss_pred EEEcCCCCCCCCCCCCcEEEEccC------------------CCChhhHHHhhhhccCCCCcceEEEEeccCcH
Q 015098 333 LITTDLLARGIDVQQVSLVINYDL------------------PTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 388 (413)
Q Consensus 333 li~t~~~~~G~d~~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 388 (413)
||||+++++|+|+|++++||+++. |.|...|.||+||+||. ..|.|+.++++.+.
T Consensus 373 lVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 373 VISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 999999999999999999999887 88999999999999999 78999999976544
No 45
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=4.5e-39 Score=304.26 Aligned_cols=288 Identities=17% Similarity=0.133 Sum_probs=209.2
Q ss_pred CCCCCcHHHHhhhhhhhcCCcE-EEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015098 59 GFEKPSAIQQRGIVPFCKGLDV-IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~i~~~~~~-li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
|+.+++|.|. +++.+++++++ ++.+|||||||++++++++..+.. .+.+++|++|+++|+.|+.+.+.. .
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~g------~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--RRLRTLILAPTRVVAAEMEEALRG------L 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTT------S
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--cCCcEEEECCCHHHHHHHHHHhcC------c
Confidence 6778999985 79999988777 999999999999988888765543 235999999999999999988752 3
Q ss_pred EEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHh-hCCCCceE
Q 015098 138 KVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ-LLPAKVQV 216 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~-~~~~~~~~ 216 (413)
.+....+.... ....+..+.++|++.+.+.+... ..+.++++||+||||++ +..+......+.. ..++..|+
T Consensus 72 ~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~ 144 (451)
T 2jlq_A 72 PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAA 144 (451)
T ss_dssp CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEE
T ss_pred eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceE
Confidence 33222111110 11234578899999988777654 45778999999999976 3222222222222 23457899
Q ss_pred EEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhhcccceEEEEccHHHHHHHH
Q 015098 217 GVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLT 296 (413)
Q Consensus 217 i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~ 296 (413)
+++|||++...... +...+........ ...... ... ...+.. ..+++||||++++.++.++
T Consensus 145 i~~SAT~~~~~~~~---~~~~~~~~~~~~~-~p~~~~----------~~~----~~~l~~-~~~~~lVF~~s~~~a~~l~ 205 (451)
T 2jlq_A 145 IFMTATPPGSTDPF---PQSNSPIEDIERE-IPERSW----------NTG----FDWITD-YQGKTVWFVPSIKAGNDIA 205 (451)
T ss_dssp EEECSSCTTCCCSS---CCCSSCEEEEECC-CCSSCC----------SSS----CHHHHH-CCSCEEEECSSHHHHHHHH
T ss_pred EEEccCCCccchhh---hcCCCceEecCcc-CCchhh----------HHH----HHHHHh-CCCCEEEEcCCHHHHHHHH
Confidence 99999997643221 2222222222110 000000 001 122222 3569999999999999999
Q ss_pred HHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEcc--------------------C
Q 015098 297 DKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD--------------------L 356 (413)
Q Consensus 297 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~--------------------~ 356 (413)
+.|+..+..+..+|+++. .++++.|++|+.+|||||+++++|+|+|+ ++||+++ .
T Consensus 206 ~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~ 280 (451)
T 2jlq_A 206 NCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPI 280 (451)
T ss_dssp HHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEE
T ss_pred HHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccc
Confidence 999999999999999753 57899999999999999999999999999 9999998 8
Q ss_pred CCChhhHHHhhhhccCCCC-cceEEEEeccC
Q 015098 357 PTQPENYLHRIGRSGRFGR-KGVAINFVTRD 386 (413)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~g~-~~~~~~~~~~~ 386 (413)
|.+..+|+||+||+||.|. .|.+++++..+
T Consensus 281 p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 281 PVTPASAAQRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred cCCHHHHHHhccccCCCCCCCccEEEEeCCc
Confidence 9999999999999999998 78888887543
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.6e-40 Score=311.20 Aligned_cols=287 Identities=17% Similarity=0.182 Sum_probs=196.0
Q ss_pred hhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHH
Q 015098 73 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 152 (413)
Q Consensus 73 ~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (413)
.+.+|+++++.+|||||||+++++++++.+... +.+++|++||++|+.|+++.+..+ .+....+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~~----- 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAFS----- 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCCC-----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CCeEEEEcchHHHHHHHHHHHhcC------CeEEecccce-----
Confidence 467899999999999999999989888866543 349999999999999999988743 2221111100
Q ss_pred HHHHcCCcEEEEccH---------HHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhC-CCCceEEEEEee
Q 015098 153 RILQAGVHVVVGTPG---------RVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL-PAKVQVGVFSAT 222 (413)
Q Consensus 153 ~~~~~~~~iii~T~~---------~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SaT 222 (413)
.++||+ .+...+. ....+.++++||+||+|++ +..+...+..+.... +...|+++||||
T Consensus 71 ---------~v~Tp~~l~~~l~~~~l~~~~~-~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT 139 (440)
T 1yks_A 71 ---------AHGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTAT 139 (440)
T ss_dssp ---------CCCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSS
T ss_pred ---------eccCCccceeeecccchhHhhh-CcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCC
Confidence 244443 3332222 3345778999999999997 332222222222222 357899999999
Q ss_pred CCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhC
Q 015098 223 MPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR 302 (413)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~ 302 (413)
+++....+ .... ..+.......+.. .....+..+ .. .++++||||++++.++.+++.|+..
T Consensus 140 ~~~~~~~~----~~~~------------~~~~~~~~~~~~~-~~~~~~~~l-~~-~~~~~lVF~~s~~~a~~l~~~L~~~ 200 (440)
T 1yks_A 140 PPGTSDEF----PHSN------------GEIEDVQTDIPSE-PWNTGHDWI-LA-DKRPTAWFLPSIRAANVMAASLRKA 200 (440)
T ss_dssp CTTCCCSS----CCCS------------SCEEEEECCCCSS-CCSSSCHHH-HH-CCSCEEEECSCHHHHHHHHHHHHHT
T ss_pred CCchhhhh----hhcC------------CCeeEeeeccChH-HHHHHHHHH-Hh-cCCCEEEEeCCHHHHHHHHHHHHHc
Confidence 98653321 1110 0011110111110 011111122 22 3579999999999999999999999
Q ss_pred CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEE-------------------ccCCCChhhH
Q 015098 303 DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN-------------------YDLPTQPENY 363 (413)
Q Consensus 303 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~-------------------~~~~~s~~~~ 363 (413)
+..+..+|| .+|.++++.|++|+.+|||||+++++|+|+| +++||+ ++.|.+..+|
T Consensus 201 ~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~ 275 (440)
T 1yks_A 201 GKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSA 275 (440)
T ss_dssp TCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHH
T ss_pred CCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHH
Confidence 999999999 3588999999999999999999999999999 999986 7889999999
Q ss_pred HHhhhhccCC-CCcceEEEEe---ccCcHHHHHHHHHHhccccccCCc
Q 015098 364 LHRIGRSGRF-GRKGVAINFV---TRDDERMLFDIQKFYNVVIEELPS 407 (413)
Q Consensus 364 ~Q~~GR~~R~-g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 407 (413)
.||+||+||. |..|.|++++ ++.+...+..++..+.....+++.
T Consensus 276 ~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~ 323 (440)
T 1yks_A 276 AQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRG 323 (440)
T ss_dssp HHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGG
T ss_pred HHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhccccccccc
Confidence 9999999997 6889999996 567777888888877665555543
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=2.4e-39 Score=316.70 Aligned_cols=308 Identities=20% Similarity=0.194 Sum_probs=214.2
Q ss_pred HHHHCCCC-----CCcHHHH-----hhhhhhh------cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCc
Q 015098 54 GIYAYGFE-----KPSAIQQ-----RGIVPFC------KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 117 (413)
Q Consensus 54 ~l~~~~~~-----~~~~~Q~-----~~~~~i~------~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~ 117 (413)
.+...||. .|++.|. .+++.++ +++++++.+|||||||++|+++++..+... +.+++|++||
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--~~~~lilaPT 279 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--RLRTAVLAPT 279 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--TCCEEEEESS
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEccH
Confidence 34445655 8999999 9999888 899999999999999999999988775542 3499999999
Q ss_pred HHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhcc
Q 015098 118 RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR 197 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~ 197 (413)
++|+.|+.+.+..+ ++. ...+... .....+.-+-+.+...+.+.+... ..+.++++||+||+|++ +.
T Consensus 280 r~La~Q~~~~l~~~----~i~--~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~ 346 (673)
T 2wv9_A 280 RVVAAEMAEALRGL----PVR--YLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DP 346 (673)
T ss_dssp HHHHHHHHHHTTTS----CCE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CH
T ss_pred HHHHHHHHHHHhcC----Cee--eeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-Cc
Confidence 99999999888754 221 1111000 000112234455555555555443 56788999999999987 22
Q ss_pred CcHHHHHHHHhhC-CCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHh
Q 015098 198 GFKDQIYDIFQLL-PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET 276 (413)
Q Consensus 198 ~~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (413)
.+...+..+.... +...|+++||||+++.... +.... ..+.......+. ......+. .+..
T Consensus 347 ~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~----~~~~~------------~~i~~v~~~~~~-~~~~~~l~-~l~~ 408 (673)
T 2wv9_A 347 ASIAARGYIATRVEAGEAAAIFMTATPPGTSDP----FPDTN------------SPVHDVSSEIPD-RAWSSGFE-WITD 408 (673)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCS----SCCCS------------SCEEEEECCCCS-SCCSSCCH-HHHS
T ss_pred cHHHHHHHHHHhccccCCcEEEEcCCCChhhhh----hcccC------------CceEEEeeecCH-HHHHHHHH-HHHh
Confidence 2222333333333 2578999999999865321 11110 011111100111 00111111 2222
Q ss_pred hcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEE---
Q 015098 277 LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN--- 353 (413)
Q Consensus 277 ~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~--- 353 (413)
.++++||||++++.++.+++.|+..+..+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 409 -~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~ 482 (673)
T 2wv9_A 409 -YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRK 482 (673)
T ss_dssp -CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCE
T ss_pred -CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCC
Confidence 46799999999999999999999999999999994 789999999999999999999999999999 999997
Q ss_pred -----------------ccCCCChhhHHHhhhhccCC-CCcceEEEEe---ccCcHHHHHHHHHHhcc
Q 015098 354 -----------------YDLPTQPENYLHRIGRSGRF-GRKGVAINFV---TRDDERMLFDIQKFYNV 400 (413)
Q Consensus 354 -----------------~~~~~s~~~~~Q~~GR~~R~-g~~~~~~~~~---~~~~~~~~~~~~~~~~~ 400 (413)
++.|.+..+|.||+||+||. |+.|.|++++ .+.+...+..++..+..
T Consensus 483 ~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l 550 (673)
T 2wv9_A 483 SVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILL 550 (673)
T ss_dssp ECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHH
T ss_pred cccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhh
Confidence 55789999999999999999 7889999996 46666666666665533
No 48
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=2.8e-38 Score=310.17 Aligned_cols=299 Identities=16% Similarity=0.212 Sum_probs=188.7
Q ss_pred CCcHHHHhhhhhhhc----C-CcEEEeCCCCCcchHHhHHHHHHccccC------CCceeEEEEcCcHHHHHHHH-HHHH
Q 015098 62 KPSAIQQRGIVPFCK----G-LDVIQQAQSGTGKTATFCSGILQQLDYG------LVQCQALVLAPTRELAQQIE-KVMR 129 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~----~-~~~li~~~tGsGKT~~~~~~~~~~~~~~------~~~~~~liv~P~~~l~~q~~-~~~~ 129 (413)
.|+++|.++++.+.+ + +++++++|||+|||++++..+...+..+ ...+++||++|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 799999999999876 4 6689999999999999766655544332 14569999999999999998 7777
Q ss_pred HhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHH----cCCCCCCcceEEEeccchHHhccCcHHHHHH
Q 015098 130 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLR----RQSLRPDYIKMFVLDEADEMLSRGFKDQIYD 205 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~----~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~ 205 (413)
.+. ..+..+.++. .....+|+|+||++|..... ...+....+++||+||||++.... ...+..
T Consensus 258 ~~~----~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~ 324 (590)
T 3h1t_A 258 PFG----DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWRE 324 (590)
T ss_dssp TTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHH
T ss_pred hcc----hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHH
Confidence 653 2233332221 13467999999999987654 123445668999999999986542 245556
Q ss_pred HHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCC-----cccccCeEEE------------------------
Q 015098 206 IFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRD-----ELTLEGIKQF------------------------ 256 (413)
Q Consensus 206 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------------------------ 256 (413)
++..++ ..+++++||||..........+++.+........ ...+..+...
T Consensus 325 il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (590)
T 3h1t_A 325 ILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP 403 (590)
T ss_dssp HHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------------
T ss_pred HHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccc
Confidence 666665 4679999999985433333334443322211000 0000000000
Q ss_pred --EEEeccc------cchH----HHHHHHHHhh-cccceEEEEccHHHHHHHHHHhhhCCC--------eeEEecCCCCH
Q 015098 257 --YVNVEKE------EWKL----ETLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDH--------TVSATHGDMDQ 315 (413)
Q Consensus 257 --~~~~~~~------~~~~----~~l~~~~~~~-~~~~~lif~~~~~~~~~l~~~L~~~~~--------~~~~~~~~~~~ 315 (413)
....... ..+. +.+...+... ..+++||||++++.++.+++.|.+.+. .+..+||+++.
T Consensus 404 ~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~ 483 (590)
T 3h1t_A 404 DGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK 483 (590)
T ss_dssp -----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH
T ss_pred cccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH
Confidence 0000000 0011 2233333332 447999999999999999999976543 37788898753
Q ss_pred HHHHHHHHHHhcCCCc---EEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCC
Q 015098 316 NTRDIIMREFRSGSSR---VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGR 375 (413)
Q Consensus 316 ~~r~~~~~~f~~~~~~---vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~ 375 (413)
+|.++++.|++|+.+ ||+||+++++|+|+|++++||++++|++...|+||+||++|.|.
T Consensus 484 -~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 484 -IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp -HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred -HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 799999999998766 88899999999999999999999999999999999999999875
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.7e-38 Score=305.90 Aligned_cols=293 Identities=20% Similarity=0.217 Sum_probs=216.7
Q ss_pred CCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEE
Q 015098 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.++++|..+++.+.+++++++.||||||||+++.+++++. +.+++|++|+++|+.|+++.+.+.. +..+..
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~ 287 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKAH---GIDPNI 287 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHHH---SCCCEE
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------CCeEEEEcchHHHHHHHHHHHHHHh---CCCeeE
Confidence 4566788888888889999999999999999998887762 3389999999999999998876643 445555
Q ss_pred EEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCce--EEEE
Q 015098 142 CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ--VGVF 219 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~--~i~~ 219 (413)
..|+.. ...+.+|+|+||+.| +....+.+.++++||+||+|.+ +.++...+..++..++...+ ++++
T Consensus 288 ~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~~llil~ 356 (666)
T 3o8b_A 288 RTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGARLVVLA 356 (666)
T ss_dssp ECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTCSEEEEE
T ss_pred EECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcCCceEEEE
Confidence 566544 235689999999997 4556677888999999999864 55566778888888876555 7888
Q ss_pred EeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHh
Q 015098 220 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM 299 (413)
Q Consensus 220 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L 299 (413)
|||++.... ...+......... ...... ..... . ++....+++||||++++.++.+++.|
T Consensus 357 SAT~~~~i~------~~~p~i~~v~~~~---~~~i~~---~~~~~-~-------l~~~~~~~vLVFv~Tr~~ae~la~~L 416 (666)
T 3o8b_A 357 TATPPGSVT------VPHPNIEEVALSN---TGEIPF---YGKAI-P-------IEAIRGGRHLIFCHSKKKCDELAAKL 416 (666)
T ss_dssp ESSCTTCCC------CCCTTEEEEECBS---CSSEEE---TTEEE-C-------GGGSSSSEEEEECSCHHHHHHHHHHH
T ss_pred CCCCCcccc------cCCcceEEEeecc---cchhHH---HHhhh-h-------hhhccCCcEEEEeCCHHHHHHHHHHH
Confidence 999986311 1111111110000 000000 00000 0 12235679999999999999999999
Q ss_pred hhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEE----------Ecc-----------CCC
Q 015098 300 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI----------NYD-----------LPT 358 (413)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi----------~~~-----------~~~ 358 (413)
++.+..+..+||++++.+ |.++..+|||||+++++|+|++ +++|| +++ .|.
T Consensus 417 ~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~ 488 (666)
T 3o8b_A 417 SGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQ 488 (666)
T ss_dssp HTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEEC
T ss_pred HhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcC
Confidence 999999999999998875 4556679999999999999997 99998 455 789
Q ss_pred ChhhHHHhhhhccCCCCcceEEEEeccCcHHH--H--HHHHHHhcccccc
Q 015098 359 QPENYLHRIGRSGRFGRKGVAINFVTRDDERM--L--FDIQKFYNVVIEE 404 (413)
Q Consensus 359 s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~ 404 (413)
+..+|+||+||+|| |..|. +.++++.+... + ..+.+..+...+.
T Consensus 489 s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~ 536 (666)
T 3o8b_A 489 DAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAW 536 (666)
T ss_dssp BHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCccc
Confidence 99999999999999 89999 89998876544 3 5555555544433
No 50
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=7e-38 Score=320.09 Aligned_cols=333 Identities=17% Similarity=0.129 Sum_probs=229.0
Q ss_pred CCCcHHHHhhhhhhhc--CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcE
Q 015098 61 EKPSAIQQRGIVPFCK--GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVK 138 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~--~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~ 138 (413)
..|+|+|.+++..+.. +.++++.++||+|||++++..+...+..+.. .++|||||+ .|+.||.+++.++. +..
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~-~rvLIVvP~-sLl~Qw~~E~~~~f---~l~ 226 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAA-ERVLIIVPE-TLQHQWLVEMLRRF---NLR 226 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSC-CCEEEECCT-TTHHHHHHHHHHHS---CCC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCC-CeEEEEeCH-HHHHHHHHHHHHHh---CCC
Confidence 4799999999998876 4589999999999999988777766655443 389999999 99999999997754 555
Q ss_pred EEEEEcCcchHHHHH--HHHcCCcEEEEccHHHHHHHHc-CCCCCCcceEEEeccchHHhccCcH--HHHHHHHhhCCCC
Q 015098 139 VHACVGGTSVREDQR--ILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEMLSRGFK--DQIYDIFQLLPAK 213 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~--~~~~~~~iii~T~~~l~~~~~~-~~~~~~~~~~iV~DE~h~~~~~~~~--~~~~~~~~~~~~~ 213 (413)
+..++++........ ......+|+|+|++.+...... ..+...++++||+||||++.+.... .....+.......
T Consensus 227 v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~ 306 (968)
T 3dmq_A 227 FALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHV 306 (968)
T ss_dssp CEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTC
T ss_pred EEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcC
Confidence 555554332211110 0112468999999988532111 1122345899999999998754422 1122222222234
Q ss_pred ceEEEEEeeCCH----hHHHHHHHhcCC----------------------------------------------------
Q 015098 214 VQVGVFSATMPP----EALEITRKFMNK---------------------------------------------------- 237 (413)
Q Consensus 214 ~~~i~~SaT~~~----~~~~~~~~~~~~---------------------------------------------------- 237 (413)
.+++++||||.. +....+......
T Consensus 307 ~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~ 386 (968)
T 3dmq_A 307 PGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLL 386 (968)
T ss_dssp SSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTG
T ss_pred CcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHH
Confidence 569999999953 111111100000
Q ss_pred ----------------------------CEEEEecCCc---ccccCeEEEEE----------------------------
Q 015098 238 ----------------------------PVRILVKRDE---LTLEGIKQFYV---------------------------- 258 (413)
Q Consensus 238 ----------------------------~~~~~~~~~~---~~~~~~~~~~~---------------------------- 258 (413)
...+...... ...........
T Consensus 387 ~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (968)
T 3dmq_A 387 QAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARD 466 (968)
T ss_dssp GGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHH
T ss_pred hcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhh
Confidence 0000000000 00000000000
Q ss_pred ----------------EeccccchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhh-CCCeeEEecCCCCHHHHHHH
Q 015098 259 ----------------NVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS-RDHTVSATHGDMDQNTRDII 321 (413)
Q Consensus 259 ----------------~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~ 321 (413)
.......+...+..++....++++||||+++..++.+.+.|.. .|+.+..+||+++..+|..+
T Consensus 467 ~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~ 546 (968)
T 3dmq_A 467 MLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRA 546 (968)
T ss_dssp HHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHH
T ss_pred hcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHH
Confidence 0111234678888888887888999999999999999999995 59999999999999999999
Q ss_pred HHHHhcCC--CcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHh
Q 015098 322 MREFRSGS--SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFY 398 (413)
Q Consensus 322 ~~~f~~~~--~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~ 398 (413)
++.|++|+ ++|||||+++++|+|+|++++||++++|+++..|.|++||+||.|+.+.++++....+......+.+.+
T Consensus 547 l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 547 AAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp HHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred HHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 99999998 999999999999999999999999999999999999999999999988766665444333333444444
No 51
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=3e-36 Score=290.48 Aligned_cols=309 Identities=16% Similarity=0.177 Sum_probs=213.6
Q ss_pred CCcHHHHhhhhhhh----cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015098 62 KPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|+|+|.++++.+. .++++++.++||+|||++++..+..... .....++||||| ..|+.||.++++++.. +.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~-~~~~~~~LIv~P-~~l~~qw~~e~~~~~~--~~ 112 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK-ENELTPSLVICP-LSVLKNWEEELSKFAP--HL 112 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH-TTCCSSEEEEEC-STTHHHHHHHHHHHCT--TS
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHh-cCCCCCEEEEcc-HHHHHHHHHHHHHHCC--Cc
Confidence 79999999998763 5789999999999999997665554433 333448999999 4688999999999875 45
Q ss_pred EEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEE
Q 015098 138 KVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVG 217 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i 217 (413)
.+..++|+... .....++|+|+||+.+.+... +....+++||+||||++.+... .....+..++ ..+.+
T Consensus 113 ~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l~-~~~~l 181 (500)
T 1z63_A 113 RFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKELK-SKYRI 181 (500)
T ss_dssp CEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTSC-EEEEE
T ss_pred eEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhH--HHHHHHHhhc-cCcEE
Confidence 56666655421 112357899999999864432 2234589999999999876542 2333444443 45789
Q ss_pred EEEeeCCHh-HHH---HH---------------------------------HHhcCCCEEEEecCCc----ccccCeEEE
Q 015098 218 VFSATMPPE-ALE---IT---------------------------------RKFMNKPVRILVKRDE----LTLEGIKQF 256 (413)
Q Consensus 218 ~~SaT~~~~-~~~---~~---------------------------------~~~~~~~~~~~~~~~~----~~~~~~~~~ 256 (413)
++||||..+ ..+ ++ ...+. +......... ...+.....
T Consensus 182 ~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~-~~~lrr~k~~~~~~~~lp~~~~~ 260 (500)
T 1z63_A 182 ALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIIS-PFILRRTKYDKAIINDLPDKIET 260 (500)
T ss_dssp EECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHT-TTEECCCTTCHHHHTTSCSEEEE
T ss_pred EEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHh-hHeeeecccccchhhcCCCCeEE
Confidence 999999542 111 11 11111 1111111100 011111111
Q ss_pred EEEec--c------------------------------------------------------ccchHHHHHHHHHhh--c
Q 015098 257 YVNVE--K------------------------------------------------------EEWKLETLCDLYETL--A 278 (413)
Q Consensus 257 ~~~~~--~------------------------------------------------------~~~~~~~l~~~~~~~--~ 278 (413)
...+. . ...+...+.+++... .
T Consensus 261 ~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~ 340 (500)
T 1z63_A 261 NVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDE 340 (500)
T ss_dssp EEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTT
T ss_pred EEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHcc
Confidence 11111 0 122444455555543 5
Q ss_pred ccceEEEEccHHHHHHHHHHhhhC-CCeeEEecCCCCHHHHHHHHHHHhcC-CCc-EEEEcCCCCCCCCCCCCcEEEEcc
Q 015098 279 ITQSVIFVNTRRKVDWLTDKMRSR-DHTVSATHGDMDQNTRDIIMREFRSG-SSR-VLITTDLLARGIDVQQVSLVINYD 355 (413)
Q Consensus 279 ~~~~lif~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-vli~t~~~~~G~d~~~~~~vi~~~ 355 (413)
+.++||||++...++.+.+.|... |..+..+||+++..+|.++++.|+++ +.+ +|++|+++++|+|++.+++||+++
T Consensus 341 ~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d 420 (500)
T 1z63_A 341 GDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFD 420 (500)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESS
T ss_pred CCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeC
Confidence 679999999999999999999885 89999999999999999999999998 555 788999999999999999999999
Q ss_pred CCCChhhHHHhhhhccCCCCcceE--EEEeccC
Q 015098 356 LPTQPENYLHRIGRSGRFGRKGVA--INFVTRD 386 (413)
Q Consensus 356 ~~~s~~~~~Q~~GR~~R~g~~~~~--~~~~~~~ 386 (413)
+|+++..+.|++||++|.|+...+ +.++..+
T Consensus 421 ~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 421 RWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred CCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 999999999999999999987654 5555554
No 52
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=9.5e-36 Score=259.43 Aligned_cols=211 Identities=33% Similarity=0.506 Sum_probs=191.2
Q ss_pred CCchhhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEE
Q 015098 33 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQAL 112 (413)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~l 112 (413)
........+|+++++++.+.+.++.+|+..|+++|.++++.+.+|+++++.+|||+|||++++++++..+.....+.++|
T Consensus 36 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~l 115 (249)
T 3ber_A 36 IVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFAL 115 (249)
T ss_dssp CHHHHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEE
T ss_pred cCcccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEE
Confidence 34556688999999999999999999999999999999999999999999999999999999999998887666666899
Q ss_pred EEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHc-CCCCCCcceEEEeccc
Q 015098 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEA 191 (413)
Q Consensus 113 iv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~-~~~~~~~~~~iV~DE~ 191 (413)
|++|+++|+.|+.+.++++....+..+..+.|+............+++|+|+||+++.+.+.. ....+.++++||+|||
T Consensus 116 il~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEa 195 (249)
T 3ber_A 116 VLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEA 195 (249)
T ss_dssp EECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcCh
Confidence 999999999999999999988888999999998887776666778899999999999988876 4566788999999999
Q ss_pred hHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEe
Q 015098 192 DEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILV 243 (413)
Q Consensus 192 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~ 243 (413)
|++.+.++...+..++..++...|++++|||++.....+...++.+|..+.+
T Consensus 196 h~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 196 DRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999999889999999999999999999999998877654
No 53
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.7e-37 Score=293.84 Aligned_cols=274 Identities=20% Similarity=0.205 Sum_probs=192.8
Q ss_pred hhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchH
Q 015098 70 GIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR 149 (413)
Q Consensus 70 ~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (413)
....+.+++++++++|||||||++++++++..+... +.++||++|+++|+.|+.+.+.. ..+....+....
T Consensus 14 ~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~~~~~~~- 84 (459)
T 2z83_A 14 SPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--RLRTAVLAPTRVVAAEMAEALRG------LPVRYQTSAVQR- 84 (459)
T ss_dssp -CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--TCCEEEEECSHHHHHHHHHHTTT------SCEEECC------
T ss_pred HHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEECchHHHHHHHHHHhcC------ceEeEEeccccc-
Confidence 344566789999999999999999999988766532 34999999999999999998862 322221111110
Q ss_pred HHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHH-----hccCcHHHHHHHHhhCCCCceEEEEEeeCC
Q 015098 150 EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM-----LSRGFKDQIYDIFQLLPAKVQVGVFSATMP 224 (413)
Q Consensus 150 ~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~-----~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 224 (413)
....+..+.++|.+.+...+... ..+.++++||+||||+. ...++... .. .....|++++|||++
T Consensus 85 ----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~---~~--~~~~~~~il~SAT~~ 154 (459)
T 2z83_A 85 ----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIAT---KV--ELGEAAAIFMTATPP 154 (459)
T ss_dssp -------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHH---HH--HTTSCEEEEECSSCT
T ss_pred ----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHH---Hh--ccCCccEEEEEcCCC
Confidence 11234567788888887666553 45778999999999973 22222111 11 125789999999998
Q ss_pred HhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCC
Q 015098 225 PEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDH 304 (413)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~ 304 (413)
.....+.. ...++..... ..+.. ....+...+.. ..+++||||++++.++.+++.|+..+.
T Consensus 155 ~~~~~~~~--~~~pi~~~~~--------------~~~~~--~~~~~~~~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~g~ 215 (459)
T 2z83_A 155 GTTDPFPD--SNAPIHDLQD--------------EIPDR--AWSSGYEWITE-YAGKTVWFVASVKMGNEIAMCLQRAGK 215 (459)
T ss_dssp TCCCSSCC--CSSCEEEEEC--------------CCCSS--CCSSCCHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTC
T ss_pred cchhhhcc--CCCCeEEecc--------------cCCcc--hhHHHHHHHHh-cCCCEEEEeCChHHHHHHHHHHHhcCC
Confidence 64321110 0112111100 00000 00011122222 267999999999999999999999999
Q ss_pred eeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEE--------------------ccCCCChhhHH
Q 015098 305 TVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN--------------------YDLPTQPENYL 364 (413)
Q Consensus 305 ~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~--------------------~~~~~s~~~~~ 364 (413)
.+..+|++ +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ ++.|.|..+|+
T Consensus 216 ~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~ 290 (459)
T 2z83_A 216 KVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAA 290 (459)
T ss_dssp CEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHH
T ss_pred cEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHH
Confidence 99999995 6778999999999999999999999999999 99998 66999999999
Q ss_pred HhhhhccCCCC-cceEEEEeccC
Q 015098 365 HRIGRSGRFGR-KGVAINFVTRD 386 (413)
Q Consensus 365 Q~~GR~~R~g~-~~~~~~~~~~~ 386 (413)
||+||+||.|. .|.+++++...
T Consensus 291 QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 291 QRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHTTSSCCTTCCCEEEEECSCC
T ss_pred HhccccCCCCCCCCeEEEEEccc
Confidence 99999999997 89999999885
No 54
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=9.7e-37 Score=286.40 Aligned_cols=269 Identities=16% Similarity=0.142 Sum_probs=188.2
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHH
Q 015098 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 155 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (413)
+|+++++++|||||||+++++++++.+... +.+++|++||++|+.|+.+.+. +..+....++.. ...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~--g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~-----~~~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK--RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQ-----SER 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCcc-----ccC
Confidence 378999999999999999988888554332 3499999999999999888775 344544444321 111
Q ss_pred HcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhC-CCCceEEEEEeeCCHhHHHHHHHh
Q 015098 156 QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL-PAKVQVGVFSATMPPEALEITRKF 234 (413)
Q Consensus 156 ~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~~~~~~~~ 234 (413)
..+..+.+.|.+.+.+.+.. ...+.++++||+||+|++ +..+......+.... +...+++++|||+++.... +
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~----~ 141 (431)
T 2v6i_A 68 TGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA----F 141 (431)
T ss_dssp -CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS----S
T ss_pred CCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh----h
Confidence 23456777888888766665 456788999999999996 332233333333332 4578999999999864221 1
Q ss_pred cCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCC
Q 015098 235 MNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 314 (413)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 314 (413)
... ...+.......+. .....+...+.. .++++||||++++.++.+++.|+..+..+..+||+
T Consensus 142 ~~~------------~~~i~~~~~~~~~--~~~~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~-- 204 (431)
T 2v6i_A 142 PPS------------NSPIIDEETRIPD--KAWNSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK-- 204 (431)
T ss_dssp CCC------------SSCCEEEECCCCS--SCCSSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT--
T ss_pred cCC------------CCceeeccccCCH--HHHHHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc--
Confidence 100 0001100000111 111112223333 35689999999999999999999999999999997
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcE-----------------EEEccCCCChhhHHHhhhhccCCCCc-
Q 015098 315 QNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL-----------------VINYDLPTQPENYLHRIGRSGRFGRK- 376 (413)
Q Consensus 315 ~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~-----------------vi~~~~~~s~~~~~Q~~GR~~R~g~~- 376 (413)
+|.++++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+..+|.||+||+||.|..
T Consensus 205 --~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~ 281 (431)
T 2v6i_A 205 --TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKL 281 (431)
T ss_dssp --THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred --cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCC
Confidence 578899999999999999999999999999 555 56778899999999999999999864
Q ss_pred ceEEEEe
Q 015098 377 GVAINFV 383 (413)
Q Consensus 377 ~~~~~~~ 383 (413)
|.++++.
T Consensus 282 ~~~~~~~ 288 (431)
T 2v6i_A 282 GDIYAYS 288 (431)
T ss_dssp CCEEEEC
T ss_pred CeEEEEc
Confidence 4455554
No 55
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1e-35 Score=258.74 Aligned_cols=212 Identities=31% Similarity=0.412 Sum_probs=193.5
Q ss_pred chhhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC-----CCce
Q 015098 35 YDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-----LVQC 109 (413)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-----~~~~ 109 (413)
...+..+|+++++++.+.+.+.+.|+..|+++|.++++.+.+|+++++.+|||||||++|+++++..+... ..++
T Consensus 24 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 103 (242)
T 3fe2_A 24 CPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGP 103 (242)
T ss_dssp CCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCC
T ss_pred CCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCC
Confidence 45667899999999999999999999999999999999999999999999999999999999998877542 2456
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEec
Q 015098 110 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLD 189 (413)
Q Consensus 110 ~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~D 189 (413)
++||++|+++|+.|+.+.++++....++.+..++|+.........+..+++|+|+||+++.+.+......+.+++++|+|
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViD 183 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLD 183 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEET
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEe
Confidence 89999999999999999999998888999999999988887777777789999999999999998888888999999999
Q ss_pred cchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCC
Q 015098 190 EADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRD 246 (413)
Q Consensus 190 E~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~ 246 (413)
|||++.+.++...+..++..+++..|++++|||+++........++.++..+.....
T Consensus 184 Eah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 184 EADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp THHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred CHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999999999999999999999999999999999988776543
No 56
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.1e-35 Score=255.74 Aligned_cols=214 Identities=61% Similarity=0.930 Sum_probs=184.2
Q ss_pred CcCCchhhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCcee
Q 015098 31 FFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ 110 (413)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~ 110 (413)
....++....+|+++++++.+.+.+.++|+..|+++|.++++.+.+|+++++.+|||+|||+++++++++.+.....+++
T Consensus 5 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~ 84 (224)
T 1qde_A 5 IQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQ 84 (224)
T ss_dssp CCBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCC
T ss_pred cccccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCce
Confidence 44567777889999999999999999999999999999999999999999999999999999999999988876666679
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEecc
Q 015098 111 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDE 190 (413)
Q Consensus 111 ~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE 190 (413)
++|++|+++|+.|+.+.+.++....+..+..+.|+........... .++|+|+||+++.+.+......+.++++||+||
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDE 163 (224)
T 1qde_A 85 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 163 (224)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred EEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEcC
Confidence 9999999999999999999998877888888888876555443333 389999999999999988888888899999999
Q ss_pred chHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecC
Q 015098 191 ADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKR 245 (413)
Q Consensus 191 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 245 (413)
||++.+.++...+..+...++...|++++|||++++.......++.++..+....
T Consensus 164 ah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 164 ADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred hhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 9999999999999999999998999999999999999999999999887766544
No 57
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.8e-35 Score=249.15 Aligned_cols=202 Identities=38% Similarity=0.633 Sum_probs=184.2
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHH
Q 015098 40 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 119 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 119 (413)
.+|+++++++.+.+.+.++|+..|+++|.++++.+.+|+++++.+|||+|||++++++++..+.....+.+++|++|+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 46999999999999999999999999999999999999999999999999999999999988876666679999999999
Q ss_pred HHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccC
Q 015098 120 LAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG 198 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~ 198 (413)
|+.|+.+.+.++.... +..+....|+............+++|+|+||+++.+.+..+...+.+++++|+||||++.+.+
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 162 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD 162 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC
Confidence 9999999999988766 788888888888776666666788999999999999998887788899999999999999989
Q ss_pred cHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEE
Q 015098 199 FKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRI 241 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~ 241 (413)
+...+..+...++...|++++|||++++.......++.+|..+
T Consensus 163 ~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 163 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred cHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999998899999999999999999999999888643
No 58
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.4e-35 Score=256.87 Aligned_cols=215 Identities=67% Similarity=1.039 Sum_probs=178.6
Q ss_pred CCCcCCchhhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCc
Q 015098 29 QDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQ 108 (413)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~ 108 (413)
......+.++..+|+++++++.+.+.+.+.|+..|+++|.++++.+.+|+++++.+|||+|||++++++++..+.....+
T Consensus 19 ~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~ 98 (237)
T 3bor_A 19 GVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKE 98 (237)
T ss_dssp --------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCS
T ss_pred CcccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCC
Confidence 33444566778899999999999999999999999999999999999999999999999999999999999988766566
Q ss_pred eeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHc-CCcEEEEccHHHHHHHHcCCCCCCcceEEE
Q 015098 109 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA-GVHVVVGTPGRVFDMLRRQSLRPDYIKMFV 187 (413)
Q Consensus 109 ~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iii~T~~~l~~~~~~~~~~~~~~~~iV 187 (413)
.++||++|+++|+.|+.+.++++....+..+..+.|+............ .++|+|+||+.+.+.+......+.++++||
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lV 178 (237)
T 3bor_A 99 TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFV 178 (237)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEE
T ss_pred ceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEE
Confidence 6999999999999999999999988778888888887765555444433 489999999999999988777888899999
Q ss_pred eccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEe
Q 015098 188 LDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILV 243 (413)
Q Consensus 188 ~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~ 243 (413)
+||||++.+.++...+..++..++...|++++|||++++.......++.+|..+.+
T Consensus 179 iDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 179 LDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp EESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred ECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999989999999999999999999999988876543
No 59
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-35 Score=293.14 Aligned_cols=334 Identities=19% Similarity=0.218 Sum_probs=236.5
Q ss_pred CCCcHHHHhhhhhhh----cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccC
Q 015098 61 EKPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG 136 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
.+|+|+|.+++..+. .++++|+..+||+|||++++..+...+......+++||||| ..++.||.+++.++.. +
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p--~ 311 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAP--D 311 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHST--T
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCC--C
Confidence 379999999998765 68899999999999999987777655544444558999999 6778999999999874 5
Q ss_pred cEEEEEEcCcchHHHHHHH------------HcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHH
Q 015098 137 VKVHACVGGTSVREDQRIL------------QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIY 204 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~------------~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~ 204 (413)
.++...+|+.......... ...++|+|+|++.+...... +....+++||+||||++.+.. ....
T Consensus 312 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s~~~ 387 (800)
T 3mwy_W 312 LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--SSLY 387 (800)
T ss_dssp CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--SHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--hHHH
Confidence 6777777765544332221 23578999999998654322 122347999999999986544 2333
Q ss_pred HHHhhCCCCceEEEEEeeCCH----hHHHHHHHhcCC-----------------------------CEEEEecCCcc--c
Q 015098 205 DIFQLLPAKVQVGVFSATMPP----EALEITRKFMNK-----------------------------PVRILVKRDEL--T 249 (413)
Q Consensus 205 ~~~~~~~~~~~~i~~SaT~~~----~~~~~~~~~~~~-----------------------------~~~~~~~~~~~--~ 249 (413)
..+..++ ....+++||||.. ++..++..+... +.......... .
T Consensus 388 ~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~ 466 (800)
T 3mwy_W 388 ESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKS 466 (800)
T ss_dssp HHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTT
T ss_pred HHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhc
Confidence 4444453 4567899999942 222222221111 11111000000 0
Q ss_pred ccCeEEEEEEec--------------------------------------------------------------------
Q 015098 250 LEGIKQFYVNVE-------------------------------------------------------------------- 261 (413)
Q Consensus 250 ~~~~~~~~~~~~-------------------------------------------------------------------- 261 (413)
.+........+.
T Consensus 467 LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~ 546 (800)
T 3mwy_W 467 LPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTREN 546 (800)
T ss_dssp SCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHH
T ss_pred cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHH
Confidence 011111111100
Q ss_pred ------cccchHHHHHHHHHhh--cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCC---
Q 015098 262 ------KEEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSS--- 330 (413)
Q Consensus 262 ------~~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~--- 330 (413)
....++..+..++... .+.++|||++....++.+.+.|...|+.+..++|+++..+|..+++.|+++..
T Consensus 547 ~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~ 626 (800)
T 3mwy_W 547 VLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDF 626 (800)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCC
T ss_pred HHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCce
Confidence 0123555566666654 45699999999999999999999999999999999999999999999998654
Q ss_pred cEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcc--eEEEEeccC--cHHHHHHHHHHhcccc
Q 015098 331 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG--VAINFVTRD--DERMLFDIQKFYNVVI 402 (413)
Q Consensus 331 ~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~ 402 (413)
.+|++|.++++|+|++.+++||+++++|++..+.|++||++|.|+.. .++.+++.. +.+.+....+.+....
T Consensus 627 v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~ 702 (800)
T 3mwy_W 627 VFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEY 702 (800)
T ss_dssp CEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC
T ss_pred EEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999864 566677765 6666666666655443
No 60
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=2.3e-35 Score=252.75 Aligned_cols=207 Identities=32% Similarity=0.494 Sum_probs=183.8
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcH
Q 015098 39 YDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR 118 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~ 118 (413)
..+|+++++++.+.+.+.+.|+..|+++|.++++.+.+|+++++.+|||+|||++++++++..+.....+.+++|++|++
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTR 82 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcH
Confidence 35799999999999999999999999999999999999999999999999999999999999887666667999999999
Q ss_pred HHHHHHHHHHHHhhccc----CcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHH
Q 015098 119 ELAQQIEKVMRALGDYL----GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM 194 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~ 194 (413)
+|+.|+.+.++++.... +..+..+.|+............+++|+|+||+++.+.+......+.+++++|+||||++
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~ 162 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLM 162 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHH
Confidence 99999999999987665 67788888887655544334457899999999999999887777888999999999999
Q ss_pred hccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecC
Q 015098 195 LSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKR 245 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 245 (413)
.+.++...+..+...++...|++++|||++.+..+..+.++.+|..+....
T Consensus 163 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 163 LDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred hhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 999999999999999988999999999999999999999999998766544
No 61
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.4e-34 Score=249.61 Aligned_cols=206 Identities=39% Similarity=0.597 Sum_probs=181.2
Q ss_pred hhhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEc
Q 015098 36 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 115 (413)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~ 115 (413)
.....+|+++++++.+.+.+++.|+..|+++|.++++.+.+|+++++.+|||+|||++|+++++..+.....+.++||++
T Consensus 20 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~ 99 (230)
T 2oxc_A 20 LAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILA 99 (230)
T ss_dssp ----CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999998887666667999999
Q ss_pred CcHHHHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHH
Q 015098 116 PTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM 194 (413)
Q Consensus 116 P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~ 194 (413)
|+++|+.|+.+.++++.... ++.+..+.|+.....+.... .+++|+|+||+++.+.+......+.+++++|+||||++
T Consensus 100 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~ 178 (230)
T 2oxc_A 100 PTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKL 178 (230)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHh
Confidence 99999999999999987654 78888888888766554443 46899999999999998887777888999999999999
Q ss_pred hccC-cHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEE
Q 015098 195 LSRG-FKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRIL 242 (413)
Q Consensus 195 ~~~~-~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~ 242 (413)
.+.+ +...+..++..++...|++++|||++++.......++.++..+.
T Consensus 179 ~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 179 LEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp HSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred hcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 9886 89999999999998999999999999998888888888876554
No 62
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.6e-33 Score=273.95 Aligned_cols=332 Identities=16% Similarity=0.164 Sum_probs=225.7
Q ss_pred CCcHHHHhhhhhhh---------cCCcEEEeCCCCCcchHHhHHHHHHccccCC----CceeEEEEcCcHHHHHHHHHHH
Q 015098 62 KPSAIQQRGIVPFC---------KGLDVIQQAQSGTGKTATFCSGILQQLDYGL----VQCQALVLAPTRELAQQIEKVM 128 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~---------~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~liv~P~~~l~~q~~~~~ 128 (413)
.|+|||.+++..+. .+.++|+..+||+|||++++..+...+.... ...++|||||+ .|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 78999999998874 3567899999999999998777766554432 23479999996 8899999999
Q ss_pred HHhhcccCcEEEEEEcCcchHHHHHH---HH-----cCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcH
Q 015098 129 RALGDYLGVKVHACVGGTSVREDQRI---LQ-----AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFK 200 (413)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~ 200 (413)
.++... ...+..++++......... .. ...+|+|+|++.+..... .+....+++||+||||++.+.. .
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~-~ 209 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD-N 209 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC-H
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh-h
Confidence 998765 4555555555443222111 11 146899999999875432 3334568999999999986654 3
Q ss_pred HHHHHHHhhCCCCceEEEEEeeCCHhH----HHH---------------HHHhc--------------------------
Q 015098 201 DQIYDIFQLLPAKVQVGVFSATMPPEA----LEI---------------TRKFM-------------------------- 235 (413)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~SaT~~~~~----~~~---------------~~~~~-------------------------- 235 (413)
.....+. .++ ....+++||||..+. ..+ ...+.
T Consensus 210 ~~~~al~-~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L 287 (644)
T 1z3i_X 210 QTYLALN-SMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQEL 287 (644)
T ss_dssp HHHHHHH-HHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHH-hcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHH
Confidence 3333333 333 456899999995321 000 00000
Q ss_pred ---CCCEEEEecCCc---ccccCeEEEEE-Ee------------------------------------------------
Q 015098 236 ---NKPVRILVKRDE---LTLEGIKQFYV-NV------------------------------------------------ 260 (413)
Q Consensus 236 ---~~~~~~~~~~~~---~~~~~~~~~~~-~~------------------------------------------------ 260 (413)
..+......... ..++.....+. ..
T Consensus 288 ~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~ 367 (644)
T 1z3i_X 288 ISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIY 367 (644)
T ss_dssp HHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHH
Confidence 000000000000 00111111100 00
Q ss_pred ---------------------------ccccchHHHHHHHHHh---hcccceEEEEccHHHHHHHHHHhhhCCCeeEEec
Q 015098 261 ---------------------------EKEEWKLETLCDLYET---LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATH 310 (413)
Q Consensus 261 ---------------------------~~~~~~~~~l~~~~~~---~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~ 310 (413)
.....+...+..++.. ..+.++|||+++...++.+.+.|...|+.+..+|
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~ 447 (644)
T 1z3i_X 368 EKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLD 447 (644)
T ss_dssp HHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEe
Confidence 0112233444444443 3467999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCc---EEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcc--eEEEEecc
Q 015098 311 GDMDQNTRDIIMREFRSGSSR---VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG--VAINFVTR 385 (413)
Q Consensus 311 ~~~~~~~r~~~~~~f~~~~~~---vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~--~~~~~~~~ 385 (413)
|+++..+|.++++.|++++.. +|++|.++++|+|++.+++||++++||++..+.|++||++|.|+.. .++.+++.
T Consensus 448 G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~ 527 (644)
T 1z3i_X 448 GTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLST 527 (644)
T ss_dssp SSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEET
T ss_pred CCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEEC
Confidence 999999999999999998764 8899999999999999999999999999999999999999999875 45556666
Q ss_pred C--cHHHHHHHHHHhcc
Q 015098 386 D--DERMLFDIQKFYNV 400 (413)
Q Consensus 386 ~--~~~~~~~~~~~~~~ 400 (413)
. +++.+.........
T Consensus 528 ~tiEe~i~~~~~~K~~l 544 (644)
T 1z3i_X 528 GTIEEKILQRQAHKKAL 544 (644)
T ss_dssp TSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 5 44555555444433
No 63
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=5.4e-35 Score=256.16 Aligned_cols=218 Identities=33% Similarity=0.499 Sum_probs=185.9
Q ss_pred hccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCC---------Cc
Q 015098 38 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL---------VQ 108 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~---------~~ 108 (413)
+..+|+++++++.+.+.|...|+..|+++|.++++.+.+|+++++.+|||+|||++++++++..+.... .+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 567899999999999999999999999999999999999999999999999999999999988775432 33
Q ss_pred eeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEe
Q 015098 109 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVL 188 (413)
Q Consensus 109 ~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~ 188 (413)
+++||++|+++|+.|+.+.++++....+..+..+.|+............+++|+|+||+++.+.+......+.++++||+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 58999999999999999999999887788888899988877776666778999999999999999888888888999999
Q ss_pred ccchHHhccCcHHHHHHHHhhC--CC--CceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEE
Q 015098 189 DEADEMLSRGFKDQIYDIFQLL--PA--KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQ 255 (413)
Q Consensus 189 DE~h~~~~~~~~~~~~~~~~~~--~~--~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (413)
||||++.+.++...+..++..+ +. ..|++++|||++++...+...++.++..+.........+++++
T Consensus 181 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q 251 (253)
T 1wrb_A 181 DEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQ 251 (253)
T ss_dssp ETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-----------
T ss_pred eCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCcee
Confidence 9999999999999999998853 33 6799999999999999999999999988877666555555544
No 64
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=249.82 Aligned_cols=208 Identities=30% Similarity=0.411 Sum_probs=180.5
Q ss_pred CchhhccCccc-CCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC------C
Q 015098 34 SYDEVYDSFDA-MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG------L 106 (413)
Q Consensus 34 ~~~~~~~~~~~-~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~------~ 106 (413)
...++..+|++ +++++.+.+.+.+.|+..|+++|.++++.+.+|+++++.+|||+|||++|+++++..+... .
T Consensus 13 ~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~ 92 (228)
T 3iuy_A 13 LIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQR 92 (228)
T ss_dssp CCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------
T ss_pred cCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhcc
Confidence 35566778888 7999999999999999999999999999999999999999999999999999988876532 2
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEE
Q 015098 107 VQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMF 186 (413)
Q Consensus 107 ~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~i 186 (413)
.++++||++|+++|+.|+.+.++++. ..+..+..+.|+............+++|+|+||+++.+.+......+.++++|
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~l 171 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYL 171 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEE
Confidence 45689999999999999999999986 34778888888887777667777889999999999999998888888999999
Q ss_pred EeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEE
Q 015098 187 VLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRIL 242 (413)
Q Consensus 187 V~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~ 242 (413)
|+||||++.+.++...+..++..+++..|++++|||+++........++.+|..+.
T Consensus 172 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 172 VIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp EECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999999999999999999999999999999999999999999998887654
No 65
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.1e-34 Score=282.82 Aligned_cols=281 Identities=17% Similarity=0.212 Sum_probs=206.0
Q ss_pred hhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHH
Q 015098 73 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 152 (413)
Q Consensus 73 ~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (413)
..+++++++++||||||||+.++..+.. .. +.+|++|+++|+.|+++.+.+. +..+..++|+......
T Consensus 151 r~l~rk~vlv~apTGSGKT~~al~~l~~----~~---~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv~- 218 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTYHAIQKYFS----AK---SGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTVQ- 218 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHHHHHHHHHH----SS---SEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECCS-
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHHh----cC---CeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEec-
Confidence 3457899999999999999855444332 22 4599999999999999999875 6778888887654110
Q ss_pred HHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCC-CCceEEEEEeeCCHhHHHHH
Q 015098 153 RILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP-AKVQVGVFSATMPPEALEIT 231 (413)
Q Consensus 153 ~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~~SaT~~~~~~~~~ 231 (413)
.-....+++++|++.+. ....++++|+||+|++.+.++...+..++..++ ...+++++|||. +......
T Consensus 219 -TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~ 288 (677)
T 3rc3_A 219 -PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLVMELM 288 (677)
T ss_dssp -TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHHHHHH
T ss_pred -CCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH-HHHHHHH
Confidence 00012678999986542 235579999999999998889999988888887 678899999995 2333333
Q ss_pred HHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecC
Q 015098 232 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHG 311 (413)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~ 311 (413)
. ..+....+...... .... . ... .+ ..+... .+..+|||++++.++.+++.|++.+..+..+||
T Consensus 289 ~-~~~~~~~v~~~~r~---~~l~---~-~~~---~l----~~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG 352 (677)
T 3rc3_A 289 Y-TTGEEVEVRDYKRL---TPIS---V-LDH---AL----ESLDNL-RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYG 352 (677)
T ss_dssp H-HHTCCEEEEECCCS---SCEE---E-CSS---CC----CSGGGC-CTTEEEECSSHHHHHHHHHHHHHTTCCCEEECT
T ss_pred H-hcCCceEEEEeeec---chHH---H-HHH---HH----HHHHhc-CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeec
Confidence 3 23344333221111 0000 0 000 00 011111 245589999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhc--CCCcEEEEcCCCCCCCCCCCCcEEEEccC--------------CCChhhHHHhhhhccCCCC
Q 015098 312 DMDQNTRDIIMREFRS--GSSRVLITTDLLARGIDVQQVSLVINYDL--------------PTQPENYLHRIGRSGRFGR 375 (413)
Q Consensus 312 ~~~~~~r~~~~~~f~~--~~~~vli~t~~~~~G~d~~~~~~vi~~~~--------------~~s~~~~~Q~~GR~~R~g~ 375 (413)
++++.+|..+++.|++ |+.+|||||+++++|+|+ ++++||+++. |.+..+|.||+||+||.|.
T Consensus 353 ~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~ 431 (677)
T 3rc3_A 353 SLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSS 431 (677)
T ss_dssp TSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTS
T ss_pred cCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCC
Confidence 9999999999999999 889999999999999999 9999999998 7799999999999999996
Q ss_pred c---ceEEEEeccCcHHHHHH
Q 015098 376 K---GVAINFVTRDDERMLFD 393 (413)
Q Consensus 376 ~---~~~~~~~~~~~~~~~~~ 393 (413)
. |.|+.+ ...+...+..
T Consensus 432 ~g~~G~v~~l-~~~d~~~~~~ 451 (677)
T 3rc3_A 432 RFKEGEVTTM-NHEDLSLLKE 451 (677)
T ss_dssp SCSSEEEEES-STTHHHHHHH
T ss_pred CCCCEEEEEE-ecchHHHHHH
Confidence 5 555554 3344344333
No 66
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=6.8e-34 Score=241.63 Aligned_cols=201 Identities=37% Similarity=0.548 Sum_probs=180.4
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC---CCceeEEEEcCc
Q 015098 41 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAPT 117 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~liv~P~ 117 (413)
+|+++++++.+.+.+.+.|+..|+++|.++++.+.+|+++++.+|||+|||++++++++..+... ..+++++|++|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 58999999999999999999999999999999999999999999999999999999998887542 345689999999
Q ss_pred HHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhcc
Q 015098 118 RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR 197 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~ 197 (413)
++|+.|+.+.+.++... ..+..++|+............+++|+|+||+.+.+.+......+.+++++|+||||++.+.
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 159 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSM 159 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhcc
Confidence 99999999999998754 6677888888776666666678999999999999999888788889999999999999999
Q ss_pred CcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEe
Q 015098 198 GFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILV 243 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~ 243 (413)
++...+..++...+...|++++|||+++....+.+.++.+|..+..
T Consensus 160 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 160 GFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred chHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999999889999999999999999999999998876643
No 67
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=5.6e-34 Score=244.37 Aligned_cols=206 Identities=41% Similarity=0.624 Sum_probs=180.3
Q ss_pred hhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcC
Q 015098 37 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 116 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P 116 (413)
....+|+++++++.+.+.+.+.|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....+.+++|++|
T Consensus 11 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 90 (220)
T 1t6n_A 11 IHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCH 90 (220)
T ss_dssp ---CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECS
T ss_pred ccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeC
Confidence 33457999999999999999999999999999999999999999999999999999999999988776555569999999
Q ss_pred cHHHHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHHH-cCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHH
Q 015098 117 TRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQ-AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM 194 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~ 194 (413)
+++|+.|+.+.++++.... +..+..++|+.....+...+. ..++|+|+||+.+...+......+.+++++|+||||++
T Consensus 91 t~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~ 170 (220)
T 1t6n_A 91 TRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKM 170 (220)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHH
Confidence 9999999999999987765 788888888887666555443 45799999999999999888788889999999999999
Q ss_pred hc-cCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEE
Q 015098 195 LS-RGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRIL 242 (413)
Q Consensus 195 ~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~ 242 (413)
.+ .++...+..++...+...|++++|||++.+...+.+.++.+|..+.
T Consensus 171 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 171 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred hcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 86 4677888889888888999999999999999899999998886553
No 68
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=243.64 Aligned_cols=207 Identities=29% Similarity=0.458 Sum_probs=181.0
Q ss_pred hhccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC----CCceeEE
Q 015098 37 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG----LVQCQAL 112 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~----~~~~~~l 112 (413)
....+|+++++++.+.+.+.+.|+..|+++|.++++.+.+|+++++.+|||+|||++++++++..+... ..+.++|
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~l 101 (236)
T 2pl3_A 22 NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVL 101 (236)
T ss_dssp GGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEE
Confidence 456789999999999999999999999999999999999999999999999999999999998876432 2345899
Q ss_pred EEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcC-CCCCCcceEEEeccc
Q 015098 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEA 191 (413)
Q Consensus 113 iv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~-~~~~~~~~~iV~DE~ 191 (413)
|++|+++|+.|+.+.++++....++.+..++|+.......... .+++|+|+||+++.+.+... ...+.++++||+|||
T Consensus 102 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 180 (236)
T 2pl3_A 102 IISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEA 180 (236)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTH
T ss_pred EEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeCh
Confidence 9999999999999999999887788898888887766554444 57899999999998888764 466778999999999
Q ss_pred hHHhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEec
Q 015098 192 DEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVK 244 (413)
Q Consensus 192 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 244 (413)
|++.+.++...+..++..++...|++++|||+++....+.+.++.+|..+...
T Consensus 181 h~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 181 DRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999888776543
No 69
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=246.06 Aligned_cols=199 Identities=30% Similarity=0.490 Sum_probs=175.2
Q ss_pred cCcccCC--CCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC----CCceeEEE
Q 015098 40 DSFDAMG--LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG----LVQCQALV 113 (413)
Q Consensus 40 ~~~~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~----~~~~~~li 113 (413)
.+|++++ +++.+.+.+.++|+..|+++|.++++.+..|+++++++|||||||++|++++++.+... ..+.+++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~li 131 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLI 131 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEE
Confidence 3566666 99999999999999999999999999999999999999999999999999999877542 23458999
Q ss_pred EcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcC-CCCCCcceEEEeccch
Q 015098 114 LAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 192 (413)
Q Consensus 114 v~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~-~~~~~~~~~iV~DE~h 192 (413)
++|+++|+.|+.+.++++....+..+..+.|+.........+..+++|+|+||+++...+... ...+.++++||+||||
T Consensus 132 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah 211 (262)
T 3ly5_A 132 LSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD 211 (262)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH
Confidence 999999999999999999888888999999998877777777778999999999999888764 3667889999999999
Q ss_pred HHhccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCC
Q 015098 193 EMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKP 238 (413)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~ 238 (413)
++.+.++...+..++..++...|++++|||++++...+.+.++.++
T Consensus 212 ~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 212 RILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp HHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred HHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999998888777654
No 70
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=251.25 Aligned_cols=204 Identities=37% Similarity=0.592 Sum_probs=180.0
Q ss_pred hccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcC--CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEc
Q 015098 38 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 115 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~ 115 (413)
...+|+++++++.+.+.|.++||..|+++|.++++.++.| +++++++|||||||++|+++++..+.....++++||++
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~ 169 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 169 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEc
Confidence 3568999999999999999999999999999999999987 99999999999999999999999988777777999999
Q ss_pred CcHHHHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHc-CCCCCCcceEEEeccchH
Q 015098 116 PTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADE 193 (413)
Q Consensus 116 P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~-~~~~~~~~~~iV~DE~h~ 193 (413)
|+++|+.|+.+.++.+.... ++.+....|+....... ..+++|+|+||++|.+++.+ +...+.++++||+||||+
T Consensus 170 PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~ 246 (300)
T 3fmo_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (300)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHH
T ss_pred CcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHH
Confidence 99999999999999987654 57777777766533221 34679999999999999865 556788899999999999
Q ss_pred Hhc-cCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEec
Q 015098 194 MLS-RGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVK 244 (413)
Q Consensus 194 ~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 244 (413)
+.+ .++...+..+...++...|++++|||++.....+...++.+|..+...
T Consensus 247 l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 987 688899999999999999999999999999999999999999877654
No 71
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=2.1e-31 Score=252.89 Aligned_cols=318 Identities=18% Similarity=0.220 Sum_probs=231.0
Q ss_pred CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015098 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|+ .|++.|.-+.-.+.+|+ |..+.||+|||+++.+|++-....+. .+.|++|+..||.|-++++..+...+|+
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~---~vhVvT~ndyLA~rdae~m~~l~~~Lgl 145 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGK---GVHLVTVNDYLARRDALWMGPVYLFLGL 145 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSS---CEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCC---ceEEEeccHHHHHhHHHHHHHHHHHhCC
Confidence 466 79999999888888888 99999999999999988864433333 8999999999999999999999999999
Q ss_pred EEEEEEcC--------------------------------------------------cchHHHHHHHHcCCcEEEEccH
Q 015098 138 KVHACVGG--------------------------------------------------TSVREDQRILQAGVHVVVGTPG 167 (413)
Q Consensus 138 ~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~iii~T~~ 167 (413)
++.++... .+........ .|||+++|..
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~DItYgTn~ 223 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LCDVTYGTNN 223 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HSSEEEEEHH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cCCCEEccCc
Confidence 99998872 1111122222 3799999998
Q ss_pred HH-HHHHHcC------CCCCCcceEEEeccchHHh-ccC------------cH---HH----------------------
Q 015098 168 RV-FDMLRRQ------SLRPDYIKMFVLDEADEML-SRG------------FK---DQ---------------------- 202 (413)
Q Consensus 168 ~l-~~~~~~~------~~~~~~~~~iV~DE~h~~~-~~~------------~~---~~---------------------- 202 (413)
-| ++.++.+ ..-...+.+.|+||++.++ +.. .. ..
T Consensus 224 EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~ 303 (822)
T 3jux_A 224 EFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKART 303 (822)
T ss_dssp HHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSC
T ss_pred chhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCe
Confidence 77 5555532 1223457899999999754 100 00 00
Q ss_pred ----------HHHHH------------------------hhCC-------------------------------------
Q 015098 203 ----------IYDIF------------------------QLLP------------------------------------- 211 (413)
Q Consensus 203 ----------~~~~~------------------------~~~~------------------------------------- 211 (413)
++.++ ..+.
T Consensus 304 v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiE 383 (822)
T 3jux_A 304 IILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIE 383 (822)
T ss_dssp EEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHH
T ss_pred EEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHH
Confidence 00000 0000
Q ss_pred ------------------------CCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchH
Q 015098 212 ------------------------AKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKL 267 (413)
Q Consensus 212 ------------------------~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (413)
--.++.+||||...+...+.. .++..+.. ++.. .......+......+...+.
T Consensus 384 aKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~-iY~l~vv~-IPtn-kp~~R~d~~d~vy~t~~eK~ 460 (822)
T 3jux_A 384 AKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQ-VYGMEVVV-IPTH-KPMIRKDHDDLVFRTQKEKY 460 (822)
T ss_dssp HHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHH-HSCCCEEE-CCCS-SCCCCEECCCEEESSHHHHH
T ss_pred HHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHH-HhCCeEEE-ECCC-CCcceeecCcEEEecHHHHH
Confidence 006799999999887765544 44433332 2221 11112222112223445677
Q ss_pred HHHHHHHHhh--cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCC
Q 015098 268 ETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDV 345 (413)
Q Consensus 268 ~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~ 345 (413)
..+...+... .+.++||||++++.++.+++.|...|+.+..+||+....++..+.+.++.| .|+|||+++++|+|+
T Consensus 461 ~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI 538 (822)
T 3jux_A 461 EKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDI 538 (822)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCC
T ss_pred HHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCc
Confidence 7887777653 567999999999999999999999999999999996655555555555555 699999999999999
Q ss_pred C--------CCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcH
Q 015098 346 Q--------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 388 (413)
Q Consensus 346 ~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 388 (413)
+ +..+||+++.|.+...|.|++||+||.|.+|.+++|++..|.
T Consensus 539 ~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 539 KLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp CCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred cCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 8 667999999999999999999999999999999999998874
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=1.2e-32 Score=279.31 Aligned_cols=311 Identities=13% Similarity=0.112 Sum_probs=206.0
Q ss_pred CCCcHHHHhhhhhhhc--------------CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHH
Q 015098 61 EKPSAIQQRGIVPFCK--------------GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEK 126 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~--------------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~ 126 (413)
..|||+|..|++.+.+ +++++++++||||||+++ ++++..+.......++||+||+++|+.|+.+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 3599999999999865 368999999999999997 4444544433333599999999999999999
Q ss_pred HHHHhhcccCcEEEEEEcCcchHHHHHHH-HcCCcEEEEccHHHHHHHHcCC--CCCCcceEEEeccchHHhccCcHHHH
Q 015098 127 VMRALGDYLGVKVHACVGGTSVREDQRIL-QAGVHVVVGTPGRVFDMLRRQS--LRPDYIKMFVLDEADEMLSRGFKDQI 203 (413)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iii~T~~~l~~~~~~~~--~~~~~~~~iV~DE~h~~~~~~~~~~~ 203 (413)
.+..+.... ..++.+.......+ ..+.+|+|+|+++|...+.... ..+..+.+||+||||+... ....
T Consensus 349 ~f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~~~~ 419 (1038)
T 2w00_A 349 EYQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---GEAQ 419 (1038)
T ss_dssp HHHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---HHHH
T ss_pred HHHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---hHHH
Confidence 999876421 12333333333333 3568999999999988776432 1244678999999999653 2345
Q ss_pred HHHHhhCCCCceEEEEEeeCCHhHH----HHHHHhcCCCEEEEecCC----cccccCeEEEEEEe-----------c---
Q 015098 204 YDIFQLLPAKVQVGVFSATMPPEAL----EITRKFMNKPVRILVKRD----ELTLEGIKQFYVNV-----------E--- 261 (413)
Q Consensus 204 ~~~~~~~~~~~~~i~~SaT~~~~~~----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-----------~--- 261 (413)
..+...++ +.+++++||||..... .....+++.+.....-.. ....+ +...+... .
T Consensus 420 ~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p-~~v~y~~v~~~~~~~~~e~d~~~ 497 (1038)
T 2w00_A 420 KNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLK-FKVDYNDVRPQFKSLETETDEKK 497 (1038)
T ss_dssp HHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCC-EEEEECCCCGGGHHHHTCCCHHH
T ss_pred HHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCC-eEEEEEeccchhhhccccccHHH
Confidence 56667775 5789999999974211 011122232221111000 00000 00000000 0
Q ss_pred ----------cccchHHHHHH-HHHhh-----------cccceEEEEccHHHHHHHHHHhhhCC------------Cee-
Q 015098 262 ----------KEEWKLETLCD-LYETL-----------AITQSVIFVNTRRKVDWLTDKMRSRD------------HTV- 306 (413)
Q Consensus 262 ----------~~~~~~~~l~~-~~~~~-----------~~~~~lif~~~~~~~~~l~~~L~~~~------------~~~- 306 (413)
....++..+.. ++... .+.++||||++++.|..+++.|.+.+ ..+
T Consensus 498 ~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~a 577 (1038)
T 2w00_A 498 LSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIA 577 (1038)
T ss_dssp HHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEE
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEE
Confidence 01112223222 22211 23589999999999999999997653 344
Q ss_pred EEecCC----------C----------CH-----------------------------HHHHHHHHHHhcCCCcEEEEcC
Q 015098 307 SATHGD----------M----------DQ-----------------------------NTRDIIMREFRSGSSRVLITTD 337 (413)
Q Consensus 307 ~~~~~~----------~----------~~-----------------------------~~r~~~~~~f~~~~~~vli~t~ 337 (413)
.++|++ + ++ ..|..++++|++|+++|||+|+
T Consensus 578 vv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd 657 (1038)
T 2w00_A 578 TIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVG 657 (1038)
T ss_dssp EECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESS
T ss_pred EEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcc
Confidence 345542 1 22 1377889999999999999999
Q ss_pred CCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCc----ceEEEEec
Q 015098 338 LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK----GVAINFVT 384 (413)
Q Consensus 338 ~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~----~~~~~~~~ 384 (413)
++.+|+|+|.+ +++.++.|.+...|+|++||++|.+.. |.++.|..
T Consensus 658 ~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 658 MFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp TTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred hHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 99999999999 677889999999999999999998753 55555443
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=238.52 Aligned_cols=211 Identities=26% Similarity=0.439 Sum_probs=175.1
Q ss_pred chhhccCcccC----CCCHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC-CCce
Q 015098 35 YDEVYDSFDAM----GLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-LVQC 109 (413)
Q Consensus 35 ~~~~~~~~~~~----~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-~~~~ 109 (413)
...+..+|+++ ++++.+.+.+.+.|+..|+++|.++++.+.+|+++++.+|||+|||++|+++++..+... ..+.
T Consensus 20 ~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~ 99 (245)
T 3dkp_A 20 LPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGF 99 (245)
T ss_dssp CCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSC
T ss_pred CCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCc
Confidence 34455667766 899999999999999999999999999999999999999999999999999998877643 3455
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHH-HHHHcCCcEEEEccHHHHHHHHcC--CCCCCcceEE
Q 015098 110 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ-RILQAGVHVVVGTPGRVFDMLRRQ--SLRPDYIKMF 186 (413)
Q Consensus 110 ~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iii~T~~~l~~~~~~~--~~~~~~~~~i 186 (413)
+++|++|+++|+.|+.+.+.++....+..+..+.|+....... .....+++|+|+||+++...+... ...+.++++|
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~l 179 (245)
T 3dkp_A 100 RALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWL 179 (245)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEE
Confidence 8999999999999999999999887788777766554322211 112346799999999999988775 4667889999
Q ss_pred EeccchHHhc---cCcHHHHHHHHhhC-CCCceEEEEEeeCCHhHHHHHHHhcCCCEEEEecC
Q 015098 187 VLDEADEMLS---RGFKDQIYDIFQLL-PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKR 245 (413)
Q Consensus 187 V~DE~h~~~~---~~~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 245 (413)
|+||||++.+ .++...+..++..+ +...|++++|||++.+.......++.++..+....
T Consensus 180 ViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 180 VVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp EESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred EEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 9999999987 46778888887665 45789999999999999999999999998877654
No 74
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.96 E-value=9.2e-29 Score=201.37 Aligned_cols=163 Identities=68% Similarity=1.050 Sum_probs=148.2
Q ss_pred cCeEEEEEEeccccchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCC
Q 015098 251 EGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSS 330 (413)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 330 (413)
+++.+.+..++....+.+.+..+++....+++||||++.+.++.+++.|...+..+..+||+++..+|..+++.|++|+.
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 46778888887766699999999998888999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCCchhh
Q 015098 331 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVA 410 (413)
Q Consensus 331 ~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (413)
+|||||+++++|+|+|++++||+++.|++...|.||+||+||.|+.|.+++++.+.+...+..++++++..+++++.++.
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 161 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCT
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred hcC
Q 015098 411 DLL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+++
T Consensus 162 ~~~ 164 (165)
T 1fuk_A 162 TLL 164 (165)
T ss_dssp TTT
T ss_pred hhc
Confidence 653
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=3.1e-27 Score=228.61 Aligned_cols=130 Identities=22% Similarity=0.226 Sum_probs=110.5
Q ss_pred CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015098 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|+ +|++.|..+++.+.+|+ +..+.||+|||+++.++++.....+ ..++|++||+.||.|.++++..+...+|+
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G---~qv~VvTPTreLA~Qdae~m~~l~~~lGL 149 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTG---KGVHVVTVNDYLARRDAEWMGPVYRGLGL 149 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTC---SCCEEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhC---CCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 688 99999999999999998 9999999999999999985433333 38999999999999999999999999999
Q ss_pred EEEEEEcCcchHHHHHHHHcCCcEEEEccHHH-HHHHHcCC------CCCC---cceEEEeccchHHh
Q 015098 138 KVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQS------LRPD---YIKMFVLDEADEML 195 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~~~------~~~~---~~~~iV~DE~h~~~ 195 (413)
++..+.|+.+..... ....++|+|+||..| +++++.+. ..+. .+.++|+||+|.++
T Consensus 150 sv~~i~Gg~~~~~r~--~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 150 SVGVIQHASTPAERR--KAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp CEEECCTTCCHHHHH--HHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred eEEEEeCCCCHHHHH--HHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 999999988744332 334689999999999 78887642 4466 78999999999876
No 76
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=6.8e-28 Score=195.70 Aligned_cols=158 Identities=41% Similarity=0.635 Sum_probs=147.8
Q ss_pred ccccCeEEEEEEeccccchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhc
Q 015098 248 LTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS 327 (413)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 327 (413)
..++++.+.+..++. ..+...+..++....++++||||+++..++.+++.|...|..+..+||++++.+|..+++.|++
T Consensus 5 ~~~~~i~~~~~~~~~-~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 5 LTTRNIEHAVIQVRE-ENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp -CCCCEEEEEEECCG-GGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCcccceEEEEECCh-HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 345678888887765 5689999999988888899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCC
Q 015098 328 GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 406 (413)
Q Consensus 328 ~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (413)
|+.+|||||+++++|+|+|++++||+++.|+++..|.||+||+||.|+.|.+++++.+.+...++.+++.++..+++++
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998887664
No 77
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=4.4e-28 Score=199.38 Aligned_cols=163 Identities=45% Similarity=0.800 Sum_probs=148.9
Q ss_pred ccccCeEEEEEEeccccchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhc
Q 015098 248 LTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS 327 (413)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 327 (413)
..++++.+.+..++....+...+..+++....+++||||+++..++.+++.|...|..+..+||+++..+|..+++.|++
T Consensus 3 ~~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CCBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred CccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 34678999999888777799999999988888899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCCCCCCCCCcEEEEccCC------CChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccc
Q 015098 328 GSSRVLITTDLLARGIDVQQVSLVINYDLP------TQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVV 401 (413)
Q Consensus 328 ~~~~vli~t~~~~~G~d~~~~~~vi~~~~~------~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (413)
|+.+|||||+++++|+|+|++++||+++.| .+...|+||+||+||.|+.|.+++++.+.+...+..+++.++..
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred cccCCchhh
Q 015098 402 IEELPSNVA 410 (413)
Q Consensus 402 ~~~~~~~~~ 410 (413)
+++++..-.
T Consensus 163 ~~~~~~~~~ 171 (175)
T 2rb4_A 163 IKQLNAEDM 171 (175)
T ss_dssp CEEECSSCC
T ss_pred ccccCCchh
Confidence 988875543
No 78
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=2.7e-27 Score=232.63 Aligned_cols=172 Identities=25% Similarity=0.282 Sum_probs=129.4
Q ss_pred CceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhh--cccceEEEEccHH
Q 015098 213 KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL--AITQSVIFVNTRR 290 (413)
Q Consensus 213 ~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lif~~~~~ 290 (413)
..|++++|||+++..... ................+. ..+.....+.+.+...+... .+.++||||+++.
T Consensus 380 ~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p~-----i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 450 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLLDPL-----VRVKPTENQILDLMEGIRERAARGERTLVTVLTVR 450 (664)
T ss_dssp CSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCCCCE-----EEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred cCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCCCCe-----EEEecccchHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 578999999998643211 111111111111111111 11222223444444444332 4679999999999
Q ss_pred HHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccC-----CCChhhHHH
Q 015098 291 KVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL-----PTQPENYLH 365 (413)
Q Consensus 291 ~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~-----~~s~~~~~Q 365 (413)
.++.+++.|...|+.+..+||++++.+|.++++.|++|+++|||||+++++|+|+|++++||+++. |.+...|+|
T Consensus 451 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQ 530 (664)
T 1c4o_A 451 MAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 530 (664)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHH
T ss_pred HHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 889999999
Q ss_pred hhhhccCCCCcceEEEEeccCcHHHHHHH
Q 015098 366 RIGRSGRFGRKGVAINFVTRDDERMLFDI 394 (413)
Q Consensus 366 ~~GR~~R~g~~~~~~~~~~~~~~~~~~~~ 394 (413)
|+||+||.| .|.++++++..+....+.+
T Consensus 531 r~GRagR~~-~G~~i~~~~~~~~~~~~~i 558 (664)
T 1c4o_A 531 TIGRAARNA-RGEVWLYADRVSEAMQRAI 558 (664)
T ss_dssp HHGGGTTST-TCEEEEECSSCCHHHHHHH
T ss_pred HHCccCcCC-CCEEEEEEcCCCHHHHHHH
Confidence 999999995 7999999988765444333
No 79
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=1.1e-27 Score=196.01 Aligned_cols=160 Identities=36% Similarity=0.682 Sum_probs=145.5
Q ss_pred ccCeEEEEEEeccccchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCC
Q 015098 250 LEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS 329 (413)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 329 (413)
++++.+.+..++. ..+...+..+++....+++||||++...++.+++.|...+..+..+||++++.+|..+++.|++|+
T Consensus 3 ~~~i~q~~~~~~~-~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLKD-NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECCG-GGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECCh-HHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 4567888887765 568999999999888889999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccC-cHHHHHHHHHHhccccccCCch
Q 015098 330 SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYNVVIEELPSN 408 (413)
Q Consensus 330 ~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 408 (413)
.+|||||+++++|+|+|++++||+++.|+++..|.||+||+||.|+.|.+++++.+. +...++.+++.++..+++++.+
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 161 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC--
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChh
Confidence 999999999999999999999999999999999999999999999999999999875 5688999999999999999876
Q ss_pred hh
Q 015098 409 VA 410 (413)
Q Consensus 409 ~~ 410 (413)
+.
T Consensus 162 ~~ 163 (172)
T 1t5i_A 162 ID 163 (172)
T ss_dssp --
T ss_pred hc
Confidence 53
No 80
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=6.4e-28 Score=200.35 Aligned_cols=179 Identities=27% Similarity=0.443 Sum_probs=146.0
Q ss_pred HHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecC
Q 015098 232 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHG 311 (413)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~ 311 (413)
..++.+|..+.+.......+++.+.+..++. ..+...+.+++... ++++||||+++..++.+++.|...+..+..+||
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg 86 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKE-EAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHG 86 (191)
T ss_dssp -------------------CCSEEEEEECCG-GGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcCh-HHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 3456667666666666677888998887765 46888888888764 468999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccC-cHHH
Q 015098 312 DMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DERM 390 (413)
Q Consensus 312 ~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~-~~~~ 390 (413)
++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+++..|.||+||+||.|+.|.+++++++. +...
T Consensus 87 ~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~ 166 (191)
T 2p6n_A 87 GKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESV 166 (191)
T ss_dssp TSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986 7889
Q ss_pred HHHHHHHhccccccCCchhhhc
Q 015098 391 LFDIQKFYNVVIEELPSNVADL 412 (413)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
++.+++.++....++|+.|.++
T Consensus 167 ~~~l~~~l~~~~~~~p~~l~~~ 188 (191)
T 2p6n_A 167 LMDLKALLLEAKQKVPPVLQVL 188 (191)
T ss_dssp HHHHHHHHHHTTCCCCHHHHST
T ss_pred HHHHHHHHHHccCcCCHHHHhh
Confidence 9999999999999999988765
No 81
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=198.01 Aligned_cols=165 Identities=35% Similarity=0.537 Sum_probs=139.0
Q ss_pred cccccCeEEEEEEeccccchHHHHHHHHHhh-cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHH
Q 015098 247 ELTLEGIKQFYVNVEKEEWKLETLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREF 325 (413)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 325 (413)
...++++.+.+..++. ..+...+.++++.. .++++||||+++..++.+++.|...|..+..+||+++..+|..+++.|
T Consensus 14 ~~~~~~i~q~~~~v~~-~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 14 GSTSENITQKVVWVEE-SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp --CCTTEEEEEEECCG-GGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred CCCCCCceEEEEEeCc-HHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 3456788999888765 46888999988876 567999999999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccC
Q 015098 326 RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEEL 405 (413)
Q Consensus 326 ~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (413)
++|+.+|||||+++++|+|+|++++||++++|+++..|.||+||+||.|+.|.+++++++.+...++.+.+.++....++
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 172 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEV 172 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCC
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cchhhhc
Q 015098 406 PSNVADL 412 (413)
Q Consensus 406 ~~~~~~~ 412 (413)
|+++.++
T Consensus 173 ~~~l~~~ 179 (185)
T 2jgn_A 173 PSWLENM 179 (185)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 9988764
No 82
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=2.7e-26 Score=225.39 Aligned_cols=170 Identities=23% Similarity=0.296 Sum_probs=129.5
Q ss_pred CceEEEEEeeCCHhHHHHHHHhcCCCEEEEecCCcccccCeEEEEEEeccccchHHHHHHHHHhh--cccceEEEEccHH
Q 015098 213 KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL--AITQSVIFVNTRR 290 (413)
Q Consensus 213 ~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lif~~~~~ 290 (413)
..|++++|||+++..... ................+. ..+.........+...+... .+.++||||+++.
T Consensus 386 ~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p~-----i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 456 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDPL-----IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKK 456 (661)
T ss_dssp CSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCCE-----EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred CCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCCe-----EEEecccchHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 578999999997543221 122222221111111111 11122223444444434332 4569999999999
Q ss_pred HHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCcEEEEccC-----CCChhhHHH
Q 015098 291 KVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL-----PTQPENYLH 365 (413)
Q Consensus 291 ~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~-----~~s~~~~~Q 365 (413)
.++.+++.|...|+.+..+||++++.+|.++++.|++|+++|||||+++++|+|+|++++||+++. |.+...|+|
T Consensus 457 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQ 536 (661)
T 2d7d_A 457 MSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 536 (661)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 899999999
Q ss_pred hhhhccCCCCcceEEEEeccCcHHHHH
Q 015098 366 RIGRSGRFGRKGVAINFVTRDDERMLF 392 (413)
Q Consensus 366 ~~GR~~R~g~~~~~~~~~~~~~~~~~~ 392 (413)
|+||+||. ..|.+++++++.+.....
T Consensus 537 r~GRagR~-~~G~~i~~~~~~~~~~~~ 562 (661)
T 2d7d_A 537 TIGRAARN-AEGRVIMYADKITKSMEI 562 (661)
T ss_dssp HHHTTTTS-TTCEEEEECSSCCHHHHH
T ss_pred HhCcccCC-CCCEEEEEEeCCCHHHHH
Confidence 99999998 679999999987654443
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=3.2e-26 Score=193.81 Aligned_cols=145 Identities=31% Similarity=0.549 Sum_probs=136.8
Q ss_pred ccchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCC
Q 015098 263 EEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 342 (413)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 342 (413)
...+.+.+.+++....++++||||+++..++.+++.|...|..+..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 15 ~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 94 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94 (212)
T ss_dssp TTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCS
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcC
Confidence 35699999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCCc
Q 015098 343 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 407 (413)
Q Consensus 343 ~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (413)
+|+|++++||+++.|++...|.||+||+||.|+.|.|++++++.+...+..+++.++..++.++.
T Consensus 95 idi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 159 (212)
T 3eaq_A 95 LDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNP 159 (212)
T ss_dssp SSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCC
T ss_pred CCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCC
Confidence 99999999999999999999999999999999999999999999999999999999988877663
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.94 E-value=2.2e-25 Score=197.26 Aligned_cols=154 Identities=31% Similarity=0.517 Sum_probs=139.1
Q ss_pred eEEEEEEeccccchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcE
Q 015098 253 IKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 332 (413)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 332 (413)
+.+.+..... ..+.+.+.++++...++++||||++++.++.+++.|...+..+..+||++++.+|..+++.|++|+.+|
T Consensus 3 v~~~~i~~~~-~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPV-RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCS-SSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCH-HHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 4556665555 569999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCCc
Q 015098 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 407 (413)
Q Consensus 333 li~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (413)
||||+++++|+|+|++++||+++.|++...|.||+||+||.|+.|.|++++++.+...+..+++.++..++.++.
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~ 156 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNP 156 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877663
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.87 E-value=2e-27 Score=194.29 Aligned_cols=156 Identities=34% Similarity=0.550 Sum_probs=142.8
Q ss_pred CeEEEEEEeccccchHHHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCc
Q 015098 252 GIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSR 331 (413)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 331 (413)
++.+.+...+....+...+..+++....+++||||+++..++.+++.|+..+..+..+||+++..+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 45566666555466888888888877778999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcceEEEEeccCcHHHHHHHHHHhccccccCCc
Q 015098 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 407 (413)
Q Consensus 332 vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (413)
|||||+++++|+|+|++++||+++.|++...|+||+||+||.|+.|.+++++...+...+..++++++..++..+.
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVI 158 (170)
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888876553
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=5.6e-25 Score=187.82 Aligned_cols=164 Identities=15% Similarity=0.109 Sum_probs=117.4
Q ss_pred CCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC---CCceeEEEEcCcHHHHHH-HHHHHHHhhc
Q 015098 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAPTRELAQQ-IEKVMRALGD 133 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~liv~P~~~l~~q-~~~~~~~~~~ 133 (413)
.+...|+++|.++++.+.+++++++.+|||+|||++++.++...+... ..+.+++|++|+++|+.| +.+.+..+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 344589999999999999999999999999999999998888766432 224599999999999999 7888888765
Q ss_pred ccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCC------CCCCcceEEEeccchHHhccCcHHHH-HHH
Q 015098 134 YLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS------LRPDYIKMFVLDEADEMLSRGFKDQI-YDI 206 (413)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~------~~~~~~~~iV~DE~h~~~~~~~~~~~-~~~ 206 (413)
. +..+..+.|+.............++|+|+||+.|...+.... ..+.++++||+||||++.+.++...+ ..+
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~ 187 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 187 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHH
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHH
Confidence 4 677777777655433333333468999999999998887643 45677899999999998766444333 333
Q ss_pred HhhC-------------CCCceEEEEEee
Q 015098 207 FQLL-------------PAKVQVGVFSAT 222 (413)
Q Consensus 207 ~~~~-------------~~~~~~i~~SaT 222 (413)
.... .+..+++++|||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 188 LMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHhcccccccccccCCCCcceEEEeecC
Confidence 2211 157899999998
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.91 E-value=1.6e-23 Score=201.90 Aligned_cols=102 Identities=11% Similarity=0.176 Sum_probs=66.2
Q ss_pred cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEE--EcCCCCCCCCCCC----CcEE
Q 015098 278 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI--TTDLLARGIDVQQ----VSLV 351 (413)
Q Consensus 278 ~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli--~t~~~~~G~d~~~----~~~v 351 (413)
.++.+|||++|...++.+++.|.. .. ...++.. ..+.++++.|+++. .||+ +|..+.+|+|+|+ +++|
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~V 456 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESL 456 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEE
Confidence 457899999999999999998865 22 3444443 46788999999865 5777 7799999999997 8899
Q ss_pred EEccCCCCh------------------------------hhHHHhhhhccCCCCcceEEEEecc
Q 015098 352 INYDLPTQP------------------------------ENYLHRIGRSGRFGRKGVAINFVTR 385 (413)
Q Consensus 352 i~~~~~~s~------------------------------~~~~Q~~GR~~R~g~~~~~~~~~~~ 385 (413)
|+++.|... ..+.|.+||+.|..++--++++++.
T Consensus 457 ii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 457 VLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp EEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 999988421 3357999999998655334445544
No 88
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.90 E-value=3.7e-21 Score=186.24 Aligned_cols=309 Identities=17% Similarity=0.129 Sum_probs=194.8
Q ss_pred CCcHHHHhhhhhh----hcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015098 62 KPSAIQQRGIVPF----CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~i----~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
++||+|.+++..+ ..|+++++.+|||+|||++++++++. .+.+++|++||++|+.|+.+++..+....++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~ 76 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRNI 76 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCc
Confidence 7899999977754 46899999999999999999999987 2349999999999999999999888766677
Q ss_pred EEEEEEcCcch---------------------------------HHHH------------------HHHHcCCcEEEEcc
Q 015098 138 KVHACVGGTSV---------------------------------REDQ------------------RILQAGVHVVVGTP 166 (413)
Q Consensus 138 ~~~~~~~~~~~---------------------------------~~~~------------------~~~~~~~~iii~T~ 166 (413)
++..+.|..+. .... +.....++|+|+||
T Consensus 77 ~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~ 156 (551)
T 3crv_A 77 TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTY 156 (551)
T ss_dssp CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEET
T ss_pred cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCc
Confidence 77776653221 0100 12234689999999
Q ss_pred HHHHHHHHcCCCCC-CcceEEEeccchHHhccCc----------------------------------------------
Q 015098 167 GRVFDMLRRQSLRP-DYIKMFVLDEADEMLSRGF---------------------------------------------- 199 (413)
Q Consensus 167 ~~l~~~~~~~~~~~-~~~~~iV~DE~h~~~~~~~---------------------------------------------- 199 (413)
..|++......+.. ....++|+||||++.+ ..
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~ 235 (551)
T 3crv_A 157 PYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYI 235 (551)
T ss_dssp HHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCE
T ss_pred hHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99987654433322 3568999999998765 20
Q ss_pred ---------HHHHH----------------------------HHH----------------------------hhCCCC-
Q 015098 200 ---------KDQIY----------------------------DIF----------------------------QLLPAK- 213 (413)
Q Consensus 200 ---------~~~~~----------------------------~~~----------------------------~~~~~~- 213 (413)
...+. .++ ..+...
T Consensus 236 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~ 315 (551)
T 3crv_A 236 KVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNE 315 (551)
T ss_dssp ECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTT
T ss_pred ccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccC
Confidence 00000 000 001122
Q ss_pred ceEEEEEeeCCHhHHHHHHHhcCCC--EEE---EecCCcccccCeEEEEEEe--cc--c---cchHHHHHHHHH---hhc
Q 015098 214 VQVGVFSATMPPEALEITRKFMNKP--VRI---LVKRDELTLEGIKQFYVNV--EK--E---EWKLETLCDLYE---TLA 278 (413)
Q Consensus 214 ~~~i~~SaT~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~--~~--~---~~~~~~l~~~~~---~~~ 278 (413)
..+|++|||+.+ ...+...++.. ... .........++. ..+... +. . ....+.+.+.+. ...
T Consensus 316 ~svIltSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf~~~~-~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~ 392 (551)
T 3crv_A 316 LSIILMSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRVSGSY-ECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQA 392 (551)
T ss_dssp CEEEEEESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCCSCEE-EEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEeeCCCc--HHHHHHHhCCCCccccccceeecCCcCCCce-EEEEeCCCCCccccCCHHHHHHHHHHHHHHHHhC
Confidence 578999999976 34444444433 211 011111112222 222221 11 0 111233333332 224
Q ss_pred ccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc--CCCCCCCCCC-----CCcEE
Q 015098 279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITT--DLLARGIDVQ-----QVSLV 351 (413)
Q Consensus 279 ~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t--~~~~~G~d~~-----~~~~v 351 (413)
++.++||++|....+.+++. .+..+..-..+++ +...++.|+.+.-.||+++ ..+.+|+|+| .+++|
T Consensus 393 ~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~v 466 (551)
T 3crv_A 393 KANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDV 466 (551)
T ss_dssp SSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEE
T ss_pred CCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEE
Confidence 57899999999999988863 3444443333444 3557777754334799998 5999999999 37889
Q ss_pred EEccCCCC------------------------------hhhHHHhhhhccCCCCcceEEEEeccC
Q 015098 352 INYDLPTQ------------------------------PENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 352 i~~~~~~s------------------------------~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 386 (413)
|+.+.|.. +..+.|.+||+.|..++--++++++..
T Consensus 467 iI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 467 VIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp EEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 98887641 112369999999986664455555554
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=7.6e-23 Score=181.66 Aligned_cols=153 Identities=17% Similarity=0.111 Sum_probs=120.5
Q ss_pred CCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEE
Q 015098 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.|+++|.++++.+.++++.++++|||+|||.+++.++...+..+ ..++||++|+++|+.||.+.+.++....+..+..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhcccccceEEE
Confidence 79999999999999888899999999999999988777655432 2389999999999999999999987655566666
Q ss_pred EEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEe
Q 015098 142 CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 221 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 221 (413)
+.++..... ......+|+|+||+.+.+. ......++++||+||||++.+ ..+..++..+....+++++||
T Consensus 191 ~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~lSA 260 (282)
T 1rif_A 191 IGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSG 260 (282)
T ss_dssp CSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECS
T ss_pred EeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEEEeC
Confidence 666654321 1113579999999987533 223456789999999999853 466777788877899999999
Q ss_pred eCCHh
Q 015098 222 TMPPE 226 (413)
Q Consensus 222 T~~~~ 226 (413)
||++.
T Consensus 261 Tp~~~ 265 (282)
T 1rif_A 261 SLRDG 265 (282)
T ss_dssp SCCTT
T ss_pred CCCCc
Confidence 99764
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.85 E-value=7.1e-21 Score=164.07 Aligned_cols=171 Identities=18% Similarity=0.187 Sum_probs=123.3
Q ss_pred CHHHHHHHHHCCCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCC--CceeEEEEcCcHHHHHHHH
Q 015098 48 QENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL--VQCQALVLAPTRELAQQIE 125 (413)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~--~~~~~liv~P~~~l~~q~~ 125 (413)
++.+.+.+...+.-.++++|.++++.+.+|+++++.||||||||.++..+++....... ...++++++|+++++.|+.
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~ 126 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVA 126 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHH
Confidence 44444444444444679999999999999999999999999999888777776554332 2458999999999999998
Q ss_pred HHHHHhhc-ccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHH-hccCcH-HH
Q 015098 126 KVMRALGD-YLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM-LSRGFK-DQ 202 (413)
Q Consensus 126 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~-~~~~~~-~~ 202 (413)
+.+..... ..+..+......... .....++|+|+||+.+.+.+.. .+.++++||+||+|+. .+.++. ..
T Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~ 198 (235)
T 3llm_A 127 ERVAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVV 198 (235)
T ss_dssp HHHHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHH
T ss_pred HHHHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHH
Confidence 88876433 223333332221110 0013478999999999988876 4778999999999984 444444 45
Q ss_pred HHHHHhhCCCCceEEEEEeeCCHhH
Q 015098 203 IYDIFQLLPAKVQVGVFSATMPPEA 227 (413)
Q Consensus 203 ~~~~~~~~~~~~~~i~~SaT~~~~~ 227 (413)
+..+.... ++.|++++|||++.+.
T Consensus 199 l~~i~~~~-~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 199 LRDVVQAY-PEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHHHHC-TTSEEEEEECSSCCHH
T ss_pred HHHHHhhC-CCCeEEEEecCCCHHH
Confidence 56666665 4789999999998765
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.84 E-value=2.6e-20 Score=160.23 Aligned_cols=139 Identities=17% Similarity=0.180 Sum_probs=110.1
Q ss_pred CCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcE-E
Q 015098 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVK-V 139 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~-~ 139 (413)
..|+++|.++++.+.+++++++++|||+|||.+++.++... +.+++|++|+++|+.||.+.+.++ +.. +
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~----~~~~v 161 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYV 161 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG----CGGGE
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC----CCCeE
Confidence 37999999999999999999999999999999988776653 348999999999999999998874 566 6
Q ss_pred EEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEE
Q 015098 140 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVF 219 (413)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 219 (413)
..+.|+.. ...+|+|+|++.+....... ...+++||+||+|++.+..+. .+...++ ..+++++
T Consensus 162 ~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~~~l~L 224 (237)
T 2fz4_A 162 GEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYV----QIAQMSI-APFRLGL 224 (237)
T ss_dssp EEESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTHH----HHHHTCC-CSEEEEE
T ss_pred EEEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHHH----HHHHhcc-CCEEEEE
Confidence 77776654 25789999999987655431 234799999999998766544 3445554 6789999
Q ss_pred EeeCCHh
Q 015098 220 SATMPPE 226 (413)
Q Consensus 220 SaT~~~~ 226 (413)
||||...
T Consensus 225 SATp~r~ 231 (237)
T 2fz4_A 225 TATFERE 231 (237)
T ss_dssp EESCC--
T ss_pred ecCCCCC
Confidence 9999754
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.84 E-value=6.6e-19 Score=171.67 Aligned_cols=81 Identities=22% Similarity=0.242 Sum_probs=64.9
Q ss_pred CCcHHHHhhhhhh----hcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCc
Q 015098 62 KPSAIQQRGIVPF----CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~i----~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
+|||.|.+.+..+ .+|+++++.||||+|||++++++++..+... +.+++|++||++++.|+.+.+..+....++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 6899999988654 5699999999999999999999998876542 349999999999999999999887665555
Q ss_pred EEEEEEc
Q 015098 138 KVHACVG 144 (413)
Q Consensus 138 ~~~~~~~ 144 (413)
++..+.|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 5554443
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.79 E-value=4.7e-19 Score=154.86 Aligned_cols=134 Identities=16% Similarity=0.213 Sum_probs=102.8
Q ss_pred ccchHHHHHHHHHhh--cccceEEEEccHHHHHHHHHHhhhC-CCeeEEecCCCCHHHHHHHHHHHhcC-CCc-EEEEcC
Q 015098 263 EEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSR-DHTVSATHGDMDQNTRDIIMREFRSG-SSR-VLITTD 337 (413)
Q Consensus 263 ~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-vli~t~ 337 (413)
...|+..+.+++... .+.++||||++...++.+.+.|... |..+..+||+++..+|.++++.|+++ +.+ +|++|.
T Consensus 94 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 173 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 173 (271)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh
Confidence 456888888888765 6789999999999999999999885 89999999999999999999999998 777 788999
Q ss_pred CCCCCCCCCCCcEEEEccCCCChhhHHHhhhhccCCCCcce--EEEEeccC--cHHHHHHHHH
Q 015098 338 LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGV--AINFVTRD--DERMLFDIQK 396 (413)
Q Consensus 338 ~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~--~~~~~~~~--~~~~~~~~~~ 396 (413)
++++|+|++.+++||++++||++..+.|++||++|.|+.+. ++.+++.+ |++.+..+.+
T Consensus 174 ~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~ 236 (271)
T 1z5z_A 174 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAF 236 (271)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHH
T ss_pred hhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998765 46666665 4444444433
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.84 E-value=6.4e-09 Score=101.37 Aligned_cols=146 Identities=20% Similarity=0.193 Sum_probs=87.9
Q ss_pred cHHHHhhhhhhhcCCcEEEeCCCCCcchHH--hHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEE
Q 015098 64 SAIQQRGIVPFCKGLDVIQQAQSGTGKTAT--FCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 141 (413)
Q Consensus 64 ~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~--~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.+.|..+++.++.++.+++.|++|+|||.+ +++..+..+.. ..+.++++++||...+.++.+.+.......++....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~ 229 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 229 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHH
Confidence 688999999999999999999999999944 44444443321 234489999999999999988877654433321100
Q ss_pred EEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEe
Q 015098 142 CVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 221 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 221 (413)
.. ... ... ..-..++-.+|... .+.........++++|+||++.+ + ...+..++..++...|++++.-
T Consensus 230 ~~-~~~--~~~---~Tih~ll~~~~~~~--~~~~~~~~~l~~d~lIIDEAsml-~---~~~~~~Ll~~l~~~~~liLvGD 297 (608)
T 1w36_D 230 KK-RIP--EDA---STLHRLLGAQPGSQ--RLRHHAGNPLHLDVLVVDEASMI-D---LPMMSRLIDALPDHARVIFLGD 297 (608)
T ss_dssp CC-SCS--CCC---BTTTSCC-------------CTTSCCSCSEEEECSGGGC-B---HHHHHHHHHTCCTTCEEEEEEC
T ss_pred Hh-ccc--hhh---hhhHhhhccCCCch--HHHhccCCCCCCCEEEEechhhC-C---HHHHHHHHHhCCCCCEEEEEcc
Confidence 00 000 000 00011111222211 01111122235899999999955 2 4567788888888888888765
Q ss_pred e
Q 015098 222 T 222 (413)
Q Consensus 222 T 222 (413)
.
T Consensus 298 ~ 298 (608)
T 1w36_D 298 R 298 (608)
T ss_dssp T
T ss_pred h
Confidence 4
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.59 E-value=9.7e-08 Score=94.12 Aligned_cols=67 Identities=22% Similarity=0.218 Sum_probs=54.7
Q ss_pred CCcHHHHhhhhhhhcCC-cEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015098 62 KPSAIQQRGIVPFCKGL-DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~~-~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
.+.+.|.+|+..++..+ -.+|.||+|||||.+..-.+.+.+..+ .++|+++||..-+.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~---~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQG---LKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEcCchHHHHHHHHHHHhc
Confidence 57899999999987655 569999999999988766666555443 39999999999999988887654
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.57 E-value=3.8e-07 Score=87.97 Aligned_cols=123 Identities=20% Similarity=0.234 Sum_probs=80.7
Q ss_pred CCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEE
Q 015098 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.+++.|..++..+..++.+++.|++|+|||.+.. .++..+.. .+.++++++||...+..+.+... ...
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~--~g~~Vl~~ApT~~Aa~~L~e~~~-------~~a-- 256 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAES--LGLEVGLCAPTGKAARRLGEVTG-------RTA-- 256 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHH--TTCCEEEEESSHHHHHHHHHHHT-------SCE--
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHh--cCCeEEEecCcHHHHHHhHhhhc-------ccH--
Confidence 6899999999999999999999999999997743 33333332 23489999999988876655331 111
Q ss_pred EEcCcchHHHHHHHHcCCcEEEEccHHHHH----HHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEE
Q 015098 142 CVGGTSVREDQRILQAGVHVVVGTPGRVFD----MLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVG 217 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~----~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i 217 (413)
.|..++.. .+.........+++||+||++.+ ....+..++..++...+++
T Consensus 257 ----------------------~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml----~~~~~~~Ll~~~~~~~~li 310 (574)
T 3e1s_A 257 ----------------------STVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMM----GDALMLSLLAAVPPGARVL 310 (574)
T ss_dssp ----------------------EEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGC----CHHHHHHHHTTSCTTCEEE
T ss_pred ----------------------HHHHHHHcCCcchhhhhhcccccCCEEEEcCccCC----CHHHHHHHHHhCcCCCEEE
Confidence 11111100 00111122335789999999976 2456677788887777777
Q ss_pred EEEee
Q 015098 218 VFSAT 222 (413)
Q Consensus 218 ~~SaT 222 (413)
++.-+
T Consensus 311 lvGD~ 315 (574)
T 3e1s_A 311 LVGDT 315 (574)
T ss_dssp EEECT
T ss_pred EEecc
Confidence 66443
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.54 E-value=6.7e-07 Score=87.63 Aligned_cols=70 Identities=20% Similarity=0.173 Sum_probs=55.0
Q ss_pred CCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015098 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 60 ~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
...+++.|..|+..++.+...+|.||+|+|||.+....+. .+... .+.++++++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~-~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVY-HLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHH-HHHTS-SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHH-HHHHc-CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4568999999999988888899999999999988544433 33321 3349999999999999988887653
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.53 E-value=4.4e-07 Score=85.68 Aligned_cols=134 Identities=15% Similarity=0.127 Sum_probs=79.2
Q ss_pred CCCCCCcHHHHhhhhhhhc----C-CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhh
Q 015098 58 YGFEKPSAIQQRGIVPFCK----G-LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~i~~----~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~ 132 (413)
..+..+++-|.+++..+.. + ..+++.|++|||||.+.. .++..+..... ..+++++||...+..+.+.+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~~~-~~il~~a~T~~Aa~~l~~~~~--- 95 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALISTGE-TGIILAAPTHAAKKILSKLSG--- 95 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHTTC-CCEEEEESSHHHHHHHHHHHS---
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhcCC-ceEEEecCcHHHHHHHHhhhc---
Confidence 3566899999999998754 2 389999999999997754 34434433222 379999999987766655441
Q ss_pred cccCcEEEEEEcCcchHHHHHHHHc-----CCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHH
Q 015098 133 DYLGVKVHACVGGTSVREDQRILQA-----GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIF 207 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~ 207 (413)
.....++ +.+.. .....+.. ........+++||+||+|.+. ...+..+.
T Consensus 96 ----~~~~T~h---------~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~iiiDE~~~~~----~~~~~~l~ 149 (459)
T 3upu_A 96 ----KEASTIH---------SILKINPVTYEENVLFEQ---------KEVPDLAKCRVLICDEVSMYD----RKLFKILL 149 (459)
T ss_dssp ----SCEEEHH---------HHHTEEEEECSSCEEEEE---------CSCCCCSSCSEEEESCGGGCC----HHHHHHHH
T ss_pred ----cchhhHH---------HHhccCcccccccchhcc---------cccccccCCCEEEEECchhCC----HHHHHHHH
Confidence 1111100 00000 00000100 112334557999999999752 44555666
Q ss_pred hhCCCCceEEEEEee
Q 015098 208 QLLPAKVQVGVFSAT 222 (413)
Q Consensus 208 ~~~~~~~~~i~~SaT 222 (413)
..++...+++++.-+
T Consensus 150 ~~~~~~~~~~~vGD~ 164 (459)
T 3upu_A 150 STIPPWCTIIGIGDN 164 (459)
T ss_dssp HHSCTTCEEEEEECT
T ss_pred HhccCCCEEEEECCH
Confidence 666656666665433
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.53 E-value=8.3e-07 Score=88.93 Aligned_cols=70 Identities=21% Similarity=0.249 Sum_probs=55.7
Q ss_pred CCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015098 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 60 ~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
+..+++.|..|+..++.+...+|.||+|||||.+....+...+.. .+.++++++||...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 346889999999999888788999999999998865444333321 2349999999999999999888764
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.45 E-value=1.4e-06 Score=87.13 Aligned_cols=70 Identities=20% Similarity=0.165 Sum_probs=54.6
Q ss_pred CCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015098 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 60 ~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
...+++.|..|+..++.+...+|.||+|+|||.+....+ ..+... .+.++++++||..-+.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i-~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV-YHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHH-HHHHTT-CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHH-HHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 346899999999998888888999999999998754433 333321 2349999999999999888877653
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.37 E-value=4.3e-05 Score=75.51 Aligned_cols=71 Identities=14% Similarity=0.182 Sum_probs=57.7
Q ss_pred CCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccC-CCceeEEEEcCcHHHHHHHHHHHHHhhc
Q 015098 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-LVQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~liv~P~~~l~~q~~~~~~~~~~ 133 (413)
..+++-|.+++.. .+..++|.|++|||||.+.+--+.+.+... ....+++++++|+..+.++.+.+.+...
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 3789999999974 467899999999999999877776666543 2334899999999999999999987643
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.18 E-value=2.6e-05 Score=68.28 Aligned_cols=122 Identities=14% Similarity=0.101 Sum_probs=90.1
Q ss_pred ccchHHHHHHHHHhh--cccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCC
Q 015098 263 EEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 340 (413)
Q Consensus 263 ~~~~~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~ 340 (413)
.+.|...+..++... .+.+++||++..+..+-+.+.+..++..+..+.|.....++ + -.+++..+.+.|...+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-A----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-h----cccCCceEEEEECCCC
Confidence 466888888888654 45699999999999999999999999999999998554321 1 1245556666677777
Q ss_pred CCCC-----CCCCcEEEEccCCCChhh-HHHhhhhccCCC----CcceEEEEeccCcHH
Q 015098 341 RGID-----VQQVSLVINYDLPTQPEN-YLHRIGRSGRFG----RKGVAINFVTRDDER 389 (413)
Q Consensus 341 ~G~d-----~~~~~~vi~~~~~~s~~~-~~Q~~GR~~R~g----~~~~~~~~~~~~~~~ 389 (413)
-|+| +..++.||.+|..|++.. .+|++-|++|.| +...++.+++..-.+
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 7776 678999999999999987 499999999973 346788888876443
No 103
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.63 E-value=8.8e-05 Score=60.51 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=29.0
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcH
Q 015098 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR 118 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~ 118 (413)
.|+-.++.||+|+|||..++-.+.+....+. +++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~---kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQ---KIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCC---EEEEEEecc
Confidence 3566789999999999887655555443333 899999874
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.56 E-value=0.00019 Score=65.98 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=65.0
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHc
Q 015098 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 157 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
+-.++.|++|+|||....- .+. . .+.+|++||++++.++.+.+.+. +.. .
T Consensus 162 ~v~~I~G~aGsGKTt~I~~----~~~-~---~~~lVlTpT~~aa~~l~~kl~~~----~~~------------------~ 211 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILS----RVN-F---EEDLILVPGRQAAEMIRRRANAS----GII------------------V 211 (446)
T ss_dssp EEEEEEECTTSCHHHHHHH----HCC-T---TTCEEEESCHHHHHHHHHHHTTT----SCC------------------C
T ss_pred cEEEEEcCCCCCHHHHHHH----Hhc-c---CCeEEEeCCHHHHHHHHHHhhhc----Ccc------------------c
Confidence 4468999999999987432 111 1 26799999999998888776432 100 0
Q ss_pred CCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEee
Q 015098 158 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 222 (413)
Q Consensus 158 ~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 222 (413)
....-+.|.++++. .........++++|+||+-.+ ....+..++...+. .+++++.-+
T Consensus 212 ~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~----~~~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 212 ATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML----HTGCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp CCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS----CHHHHHHHHHHTTC-SEEEEEECT
T ss_pred cccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC----CHHHHHHHHHhCCC-CEEEEecCc
Confidence 11234788777542 222222223789999999854 23444445555543 555555444
No 105
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.55 E-value=0.00088 Score=60.80 Aligned_cols=72 Identities=8% Similarity=0.004 Sum_probs=56.3
Q ss_pred CCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcc
Q 015098 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~ 134 (413)
.++|+|...+..+...+.+++..+-+.|||.+....++..+.. .++..++++.|+...+..+.+.+..+...
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 7899999999877555678999999999998876665553333 34458999999999998888888776543
No 106
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.53 E-value=0.00011 Score=61.43 Aligned_cols=90 Identities=19% Similarity=0.206 Sum_probs=53.2
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHH
Q 015098 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQ 156 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
|.-.++.|++|+|||..++-.+......+. +++++.|...-. . ........|+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~---kVli~~~~~d~r---~--~~~i~srlG~~~----------------- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADV---KYLVFKPKIDTR---S--IRNIQSRTGTSL----------------- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC---CEEEEEECCCGG---G--CSSCCCCCCCSS-----------------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCC---EEEEEEeccCch---H--HHHHHHhcCCCc-----------------
Confidence 566789999999999887665555544433 888888765310 0 001111112110
Q ss_pred cCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHH
Q 015098 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM 194 (413)
Q Consensus 157 ~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~ 194 (413)
..+-+.+.+.+...+.... ....+++||+||++.+
T Consensus 67 --~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 --PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFF 101 (223)
T ss_dssp --CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGS
T ss_pred --cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccC
Confidence 1233556666666665432 2334799999999975
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.45 E-value=0.00052 Score=55.72 Aligned_cols=39 Identities=18% Similarity=0.018 Sum_probs=27.6
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcH
Q 015098 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR 118 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~ 118 (413)
|+-.++.||+|+|||..++-.+......+ .+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g---~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGK---KKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT---CEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeecc
Confidence 55678999999999988655544443333 3888888874
No 108
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.43 E-value=0.00018 Score=71.36 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=57.2
Q ss_pred CCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHcccc-CCCceeEEEEcCcHHHHHHHHHHHHHhhc
Q 015098 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~liv~P~~~l~~q~~~~~~~~~~ 133 (413)
.+++-|.+++.. .+.+++|.|++|||||.+..--+.+.+.. +....++++++.|+..+.++.+++.+...
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478999999986 36789999999999999877667666654 33344899999999999999999987654
No 109
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.40 E-value=0.0002 Score=58.98 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=29.5
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHH
Q 015098 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 119 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 119 (413)
|+-.++.+++|+|||..++-.+.++...+. +++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~---kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQ---HAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC---CEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCC---EEEEEEeccC
Confidence 455678999999999887766666554444 8999999764
No 110
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.30 E-value=0.00065 Score=54.94 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=17.1
Q ss_pred cCCcEEEeCCCCCcchHHhH
Q 015098 76 KGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~ 95 (413)
.|+.+++.||+|+|||..+-
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 37889999999999997753
No 111
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.30 E-value=0.00048 Score=61.90 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=27.0
Q ss_pred CcHHHHhhhhhhhc----C---CcEEEeCCCCCcchHHhHHHHH
Q 015098 63 PSAIQQRGIVPFCK----G---LDVIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 63 ~~~~Q~~~~~~i~~----~---~~~li~~~tGsGKT~~~~~~~~ 99 (413)
++|+|.+++..+.+ | +.+++.||+|+|||..+...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHH
Confidence 46888888776653 3 3489999999999987654443
No 112
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.30 E-value=0.0026 Score=61.82 Aligned_cols=73 Identities=10% Similarity=0.038 Sum_probs=57.4
Q ss_pred CCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhccc
Q 015098 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL 135 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~ 135 (413)
.|+|+|...+..+...+..++..+-|+|||.+....++..+... ++.+++++.|+...+....+.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 58999999998875567799999999999987665555444433 34589999999999999888888776544
No 113
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.25 E-value=0.00056 Score=68.21 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=57.2
Q ss_pred CCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHcccc-CCCceeEEEEcCcHHHHHHHHHHHHHhh
Q 015098 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 61 ~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~liv~P~~~l~~q~~~~~~~~~ 132 (413)
..+++-|.+++.. .+..++|.|+.|||||.+..--+.+.+.. +....++|+++.|+..+.++.+++.+..
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 3689999999986 35789999999999999887777766653 3334489999999999999999888764
No 114
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.19 E-value=0.00057 Score=56.78 Aligned_cols=40 Identities=13% Similarity=0.103 Sum_probs=30.4
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHH
Q 015098 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 119 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 119 (413)
|+-.++.|++|+|||..++-.+.++...+. +++++-|...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~---kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQY---KCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTC---CEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCC---eEEEEeecCC
Confidence 566789999999999887766665544444 8999988754
No 115
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.14 E-value=0.00067 Score=71.71 Aligned_cols=104 Identities=18% Similarity=0.121 Sum_probs=72.1
Q ss_pred CCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCC---CceeEEEEcCcHHHHHHHHHHHHHhhcccCcE
Q 015098 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL---VQCQALVLAPTRELAQQIEKVMRALGDYLGVK 138 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~ 138 (413)
.+++-|.+++..- +++++|.|+.|||||.+.+--++..+..+. ...+++++++|++.+.++.+++..........
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~~~~ 87 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKELVQ 87 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHHHhhc
Confidence 6899999999764 889999999999999998877777776643 44589999999999999999887743211000
Q ss_pred EEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHH
Q 015098 139 VHACVGGTSVREDQRILQAGVHVVVGTPGRVFDML 173 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~ 173 (413)
........+....-..+-|+|..+|...+
T Consensus 88 ------~~~~~~~~~~~~~~~~~~i~T~hsf~~~~ 116 (1232)
T 3u4q_A 88 ------RPGSLHIRRQLSLLNRASISTLHSFCLQV 116 (1232)
T ss_dssp ------STTCHHHHHHHHHTTTSEEECHHHHHHHH
T ss_pred ------CcchHHHHHHHhccCCCeEEeHHHHHHHH
Confidence 00001112222222456789988875444
No 116
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.12 E-value=0.00076 Score=54.57 Aligned_cols=38 Identities=13% Similarity=0.057 Sum_probs=28.7
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCc
Q 015098 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 117 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~ 117 (413)
|+-.++.||+|+|||.-.+-.+-.....+ .+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~---~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQ---YKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEccc
Confidence 56679999999999976665555554444 389999886
No 117
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.11 E-value=0.00061 Score=55.94 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=28.2
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHH
Q 015098 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 119 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 119 (413)
.|.-.++.+|+|+|||..++-.+......+ .+++++.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g---~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAK---QKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcC---CceEEEEeccC
Confidence 355679999999999987665554443333 38899999754
No 118
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.11 E-value=0.004 Score=51.84 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=25.8
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEee
Q 015098 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 222 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 222 (413)
....+||+||+|.+.... ...+..++...+.+..+++.|..
T Consensus 101 ~~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTADA-QAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHHH-HHHHHHHHHhcCCCCeEEEEeCC
Confidence 446799999999874332 44555566665556656555433
No 119
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.08 E-value=0.002 Score=49.85 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=17.2
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
..+.++++.||+|+|||..+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 45788999999999999765
No 120
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.05 E-value=0.0021 Score=57.44 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=16.3
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
+..+++.||+|+|||..+-
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4689999999999997753
No 121
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.00 E-value=0.00026 Score=55.31 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=17.4
Q ss_pred cCCcEEEeCCCCCcchHHhH
Q 015098 76 KGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~ 95 (413)
.|..+++.||+|+|||..+-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 68889999999999997653
No 122
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.0025 Score=56.26 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=18.9
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHcc
Q 015098 77 GLDVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~ 102 (413)
+.++++.||+|+|||.+.- .++..+
T Consensus 45 ~~~lli~GpPGTGKT~~v~-~v~~~L 69 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN-DVMDEL 69 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH-HHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHH
Confidence 5789999999999998753 333344
No 123
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.87 E-value=0.0036 Score=57.27 Aligned_cols=20 Identities=35% Similarity=0.351 Sum_probs=16.8
Q ss_pred cCCcEEEeCCCCCcchHHhH
Q 015098 76 KGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~ 95 (413)
.+.++++.||+|+|||..+-
T Consensus 43 ~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHH
Confidence 35789999999999997753
No 124
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.85 E-value=0.0019 Score=62.48 Aligned_cols=113 Identities=18% Similarity=0.197 Sum_probs=74.8
Q ss_pred CCcHHHHhhhhhhhc--CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEE
Q 015098 62 KPSAIQQRGIVPFCK--GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKV 139 (413)
Q Consensus 62 ~~~~~Q~~~~~~i~~--~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~ 139 (413)
.++.-|.+++..+.+ ....++.|+-|.|||.+.-+.+.... . .++|.+|+..-+....+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~---~---~~~vtAP~~~a~~~l~~~~~~--------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA---G---RAIVTAPAKASTDVLAQFAGE--------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS---S---CEEEECSSCCSCHHHHHHHGG---------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH---h---CcEEECCCHHHHHHHHHHhhC---------
Confidence 678899999998876 44579999999999966544444332 1 569999998765543332211
Q ss_pred EEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEE
Q 015098 140 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVF 219 (413)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 219 (413)
.+-+..|+.+.. .....+++|||||=.+ ....+..++...+ .+++
T Consensus 240 --------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaI----p~pll~~ll~~~~----~v~~ 284 (671)
T 2zpa_A 240 --------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAI----PAPLLHQLVSRFP----RTLL 284 (671)
T ss_dssp --------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGS----CHHHHHHHHTTSS----EEEE
T ss_pred --------------------CeEEeCchhhhh-------CcccCCEEEEEchhcC----CHHHHHHHHhhCC----eEEE
Confidence 133446655431 1223789999999865 4566667766443 5777
Q ss_pred EeeCC
Q 015098 220 SATMP 224 (413)
Q Consensus 220 SaT~~ 224 (413)
|.|..
T Consensus 285 ~tTv~ 289 (671)
T 2zpa_A 285 TTTVQ 289 (671)
T ss_dssp EEEBS
T ss_pred EecCC
Confidence 88864
No 125
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.85 E-value=0.017 Score=49.92 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=16.2
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
..++++.||+|+|||..+-
T Consensus 64 ~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4679999999999998764
No 126
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.83 E-value=0.0027 Score=49.23 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=17.5
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
..+.++++.||+|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 35789999999999999875
No 127
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.76 E-value=0.0038 Score=58.22 Aligned_cols=39 Identities=13% Similarity=0.033 Sum_probs=23.8
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcC
Q 015098 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 116 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P 116 (413)
+..+++.||+|+|||..+- ++...+....++.+++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~-aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH-HHHHHHHHHCCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEeeH
Confidence 3679999999999997753 33333322222335555543
No 128
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.62 E-value=0.0023 Score=54.18 Aligned_cols=20 Identities=10% Similarity=0.018 Sum_probs=17.1
Q ss_pred cCCcEEEeCCCCCcchHHhH
Q 015098 76 KGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~ 95 (413)
.+..+++.||+|+|||..+-
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 46789999999999997753
No 129
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.62 E-value=0.011 Score=52.75 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=24.6
Q ss_pred cceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015098 182 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 182 ~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
..+++++||+|.+........+..++...+...++|+.|
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 568999999998862223445555555555556666533
No 130
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.42 E-value=0.0078 Score=55.00 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=16.1
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
++.+++.||+|+|||..+-
T Consensus 45 ~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4579999999999997753
No 131
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.36 E-value=0.011 Score=51.52 Aligned_cols=53 Identities=15% Similarity=0.106 Sum_probs=30.2
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHH-HHhhhhh--hhcCCcEEEeCCCCCcchHHh
Q 015098 39 YDSFDAMGLQENLLRGIYAYGFEKPSAI-QQRGIVP--FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~-Q~~~~~~--i~~~~~~li~~~tGsGKT~~~ 94 (413)
..+|+++.-.+...+.+...-. .+. ..+.+.. +..++++++.||+|+|||..+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3456776655566555543210 000 1112222 234678999999999999775
No 132
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.36 E-value=0.0093 Score=48.98 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.9
Q ss_pred CcEEEeCCCCCcchHHhH
Q 015098 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~ 95 (413)
.++++.||+|+|||..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 789999999999998754
No 133
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.34 E-value=0.0022 Score=56.82 Aligned_cols=19 Identities=32% Similarity=0.358 Sum_probs=16.3
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
+.++++.||+|+|||..+-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999998764
No 134
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.31 E-value=0.0095 Score=52.99 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=24.9
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015098 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
....++|+||+|.+.... ...+...+...+....+++.|
T Consensus 109 ~~~~vliiDe~~~l~~~~-~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDA-QQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHHH-HHHHHHHHHhcCCCCeEEEEe
Confidence 346899999999874332 445555666655566665544
No 135
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.24 E-value=0.0076 Score=54.36 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=25.6
Q ss_pred cceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEee
Q 015098 182 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 222 (413)
Q Consensus 182 ~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 222 (413)
..++|++||+|.+.... ...+..++...+....+++.+..
T Consensus 133 ~~~vliiDE~~~l~~~~-~~~Ll~~le~~~~~~~~il~~~~ 172 (353)
T 1sxj_D 133 PYKIIILDEADSMTADA-QSALRRTMETYSGVTRFCLICNY 172 (353)
T ss_dssp SCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEECCCccCHHH-HHHHHHHHHhcCCCceEEEEeCc
Confidence 45899999999875432 34555666665556666655433
No 136
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.18 E-value=0.0052 Score=56.24 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=15.0
Q ss_pred cEEEeCCCCCcchHHhH
Q 015098 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~ 95 (413)
.+++.||+|+|||..+-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999997753
No 137
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.13 E-value=0.037 Score=49.45 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=16.1
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
..++++.||+|+|||..+-
T Consensus 55 ~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCCEEEECSTTSSHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 3589999999999998753
No 138
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.08 E-value=0.015 Score=46.74 Aligned_cols=19 Identities=32% Similarity=0.295 Sum_probs=16.3
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
..++++.||+|+|||..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 5679999999999997754
No 139
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.05 E-value=0.027 Score=51.95 Aligned_cols=132 Identities=16% Similarity=0.220 Sum_probs=66.9
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEc-C-cHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH
Q 015098 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA-P-TRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 154 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~-P-~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (413)
+.-++++|++|+|||.++...+...... +.+++++. + .+.-+ .+.+..+....+..+.....+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~-------- 162 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQ-------- 162 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCS--------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccC--------
Confidence 3467899999999998765444332222 23665554 3 22222 2233333333344332111111
Q ss_pred HHcCCcEEEEccHHHH-HHHHcCCCCCCcceEEEeccchHHh---ccCcHHHHHHHHhhCCCCceEEEEEeeCCHhHHHH
Q 015098 155 LQAGVHVVVGTPGRVF-DMLRRQSLRPDYIKMFVLDEADEML---SRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEI 230 (413)
Q Consensus 155 ~~~~~~iii~T~~~l~-~~~~~~~~~~~~~~~iV~DE~h~~~---~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~ 230 (413)
.|..+. ..+.. ....+++++|+|++-++. +......+..+.....+..-++.++|+...+....
T Consensus 163 ----------dp~~i~~~al~~--a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~ 230 (433)
T 3kl4_A 163 ----------NPIEIAKKGVDI--FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL 230 (433)
T ss_dssp ----------CHHHHHHHHHHH--TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH
T ss_pred ----------CHHHHHHHHHHH--HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH
Confidence 122111 12222 122457899999997543 22234555555555555666777888876554444
Q ss_pred HHHh
Q 015098 231 TRKF 234 (413)
Q Consensus 231 ~~~~ 234 (413)
...+
T Consensus 231 a~~f 234 (433)
T 3kl4_A 231 ASRF 234 (433)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 140
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.97 E-value=0.063 Score=45.03 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=15.0
Q ss_pred CcEEEeCCCCCcchHHhH
Q 015098 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~ 95 (413)
+.+++.||+|+|||..+-
T Consensus 46 ~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp SEEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 368999999999997653
No 141
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.93 E-value=0.022 Score=46.04 Aligned_cols=135 Identities=17% Similarity=0.161 Sum_probs=71.0
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHH-HHHHHHHHHHHhhcccCcEEEEEEcCcc----hHHH
Q 015098 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE-LAQQIEKVMRALGDYLGVKVHACVGGTS----VRED 151 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 151 (413)
...+++..++|.|||.+++..++.++..+. +++|+--.+. ....=.+.+..+ ++.......+.. ....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~---rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~~~~~ 100 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGK---NVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQNREA 100 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTC---CEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGGGHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCCCcHH
Confidence 357899999999999999988888877766 8888743221 000000112222 222222111111 0000
Q ss_pred HHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEEeccchHHhccC--cHHHHHHHHhhCCCCceEEEEEeeCCHhHHH
Q 015098 152 QRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG--FKDQIYDIFQLLPAKVQVGVFSATMPPEALE 229 (413)
Q Consensus 152 ~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 229 (413)
.... --..|. .... .+.-..+++||+||+-.....+ ....+..++...+...-+|+.+--+++++.+
T Consensus 101 ~~~~---------a~~~l~-~a~~-~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 101 DTAA---------CMAVWQ-HGKR-MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILD 169 (196)
T ss_dssp HHHH---------HHHHHH-HHHH-HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHH
T ss_pred HHHH---------HHHHHH-HHHH-HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHH
Confidence 0000 011222 2221 1223458999999997654443 2356666777766666666666666655544
No 142
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.88 E-value=0.032 Score=50.72 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=16.4
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
+..+++.||+|+|||..+-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5789999999999997753
No 143
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.83 E-value=0.026 Score=50.83 Aligned_cols=43 Identities=9% Similarity=0.267 Sum_probs=28.6
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEEeeCC
Q 015098 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 224 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 224 (413)
.+.+++|+||+|.+ +......+.+.+...+.+..+++.|..+.
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 34689999999984 44445666677776666666666655443
No 144
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.75 E-value=0.036 Score=49.23 Aligned_cols=55 Identities=9% Similarity=-0.037 Sum_probs=30.7
Q ss_pred hccCcccCCCCHHHHHHHHHCCCCCCcHHHH-hhhhh-hhcCCcEEEeCCCCCcchHHhH
Q 015098 38 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQ-RGIVP-FCKGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~-~~~~~-i~~~~~~li~~~tGsGKT~~~~ 95 (413)
+-.+|+++.-.+...+.+...-. .|... +.+.. ....+++++.||+|+|||..+-
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 34567777666666666644211 11110 01111 1124679999999999998753
No 145
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.73 E-value=0.027 Score=49.50 Aligned_cols=39 Identities=8% Similarity=0.154 Sum_probs=25.5
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015098 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
...+++|+||+|.+.... ...+.+.++.-++...+++.|
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 457899999999875433 344556666655566555554
No 146
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.67 E-value=0.022 Score=50.50 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=23.7
Q ss_pred ceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015098 183 IKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 183 ~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
..+||+||+|.+.... ...+...+...+....+++.|
T Consensus 108 ~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 108 HKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred ceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 6899999999875332 334455555555566666554
No 147
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.60 E-value=0.084 Score=48.67 Aligned_cols=58 Identities=21% Similarity=0.092 Sum_probs=32.6
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEc-C-cHHHHHHHHHHHHHhhcccCcEEE
Q 015098 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA-P-TRELAQQIEKVMRALGDYLGVKVH 140 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~-P-~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
+.-+++++++|+|||.++...+...... +.+++++. . .+.-+ .+.+..+....+..+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~---G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR---GYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVF 159 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEE
Confidence 3467999999999998865444333222 23665555 2 33322 3344555555566544
No 148
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.49 E-value=0.071 Score=53.24 Aligned_cols=102 Identities=17% Similarity=0.120 Sum_probs=75.4
Q ss_pred EEEEeccccchHHHHH-HHHHh-hcccceEEEEccHHHHHHHHHHhhh----CCCeeEEecCCCCHHHHHHHHHHHhcCC
Q 015098 256 FYVNVEKEEWKLETLC-DLYET-LAITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGS 329 (413)
Q Consensus 256 ~~~~~~~~~~~~~~l~-~~~~~-~~~~~~lif~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 329 (413)
.....++..+|..... .++.. ..+.+++|.+|++.-+...++.+.. .+..+..++|+++..++...++.+.+|+
T Consensus 392 ~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~ 471 (780)
T 1gm5_A 392 RLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQ 471 (780)
T ss_dssp CEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCC
Confidence 3444555555554332 22222 2456899999999888777666654 4789999999999999999999999999
Q ss_pred CcEEEEcC-CCCCCCCCCCCcEEEEccCC
Q 015098 330 SRVLITTD-LLARGIDVQQVSLVINYDLP 357 (413)
Q Consensus 330 ~~vli~t~-~~~~G~d~~~~~~vi~~~~~ 357 (413)
.+|+|+|. .+...+++.++..||.....
T Consensus 472 ~~IvVgT~~ll~~~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 472 IDVVIGTHALIQEDVHFKNLGLVIIDEQH 500 (780)
T ss_dssp CCEEEECTTHHHHCCCCSCCCEEEEESCC
T ss_pred CCEEEECHHHHhhhhhccCCceEEecccc
Confidence 99999997 34556778888888876543
No 149
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.25 E-value=0.0091 Score=55.65 Aligned_cols=18 Identities=33% Similarity=0.298 Sum_probs=15.5
Q ss_pred CcEEEeCCCCCcchHHhH
Q 015098 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~ 95 (413)
.++++.||+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 468999999999998753
No 150
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.20 E-value=0.067 Score=47.89 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=26.2
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015098 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
...+++|+||+|.+.... ...+.+.++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAA-QNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 347899999999875432 455666667666666666544
No 151
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.06 E-value=0.063 Score=49.08 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=16.6
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
.+++++.||+|+|||..+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999998753
No 152
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.04 E-value=0.049 Score=49.39 Aligned_cols=39 Identities=13% Similarity=0.274 Sum_probs=23.2
Q ss_pred CcceEEEeccchHHhccCcHHHHHHHHhhCCCCceEEEEE
Q 015098 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 181 ~~~~~iV~DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 220 (413)
....+||+||+|.+.... ...+.+.+...+....+|+.|
T Consensus 118 ~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHHH-HHHHHHHHhcCCCceEEEEEe
Confidence 345799999999874332 344445555544455444443
No 153
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.95 E-value=0.09 Score=47.35 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.3
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
.+++++.||+|+|||..+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4679999999999998763
No 154
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.85 E-value=0.055 Score=49.75 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=15.4
Q ss_pred CCcEEE--eCCCCCcchHHhH
Q 015098 77 GLDVIQ--QAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li--~~~tGsGKT~~~~ 95 (413)
+..+++ .||+|+|||..+-
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHH
Confidence 456788 9999999997753
No 155
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.82 E-value=0.013 Score=51.98 Aligned_cols=17 Identities=41% Similarity=0.515 Sum_probs=14.8
Q ss_pred cEEEeCCCCCcchHHhH
Q 015098 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~ 95 (413)
++++.||+|+|||..+-
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 59999999999997753
No 156
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.63 E-value=0.032 Score=53.19 Aligned_cols=41 Identities=12% Similarity=0.065 Sum_probs=25.3
Q ss_pred cceEEEeccchHHhccC--cHHHHHHHHhhCCCCceEEEEEeeCC
Q 015098 182 YIKMFVLDEADEMLSRG--FKDQIYDIFQLLPAKVQVGVFSATMP 224 (413)
Q Consensus 182 ~~~~iV~DE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~~SaT~~ 224 (413)
...+|++||+|.+.... ....+..++... ...+++++++..
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~ 190 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERN 190 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTT
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence 35799999999886533 124444454443 445777777643
No 157
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.61 E-value=0.088 Score=49.20 Aligned_cols=42 Identities=17% Similarity=0.069 Sum_probs=28.3
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCc
Q 015098 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 117 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~ 117 (413)
+..|.-+++.|++|+|||..++..+....... +.+++|+..-
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E 241 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLE 241 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECC
Confidence 44567899999999999977665554443321 2267777643
No 158
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.44 E-value=0.15 Score=47.92 Aligned_cols=43 Identities=23% Similarity=0.361 Sum_probs=26.9
Q ss_pred ceEEEeccchHHhccC----------cHHHHHHHHhhCCCCceEEEEEeeCCH
Q 015098 183 IKMFVLDEADEMLSRG----------FKDQIYDIFQLLPAKVQVGVFSATMPP 225 (413)
Q Consensus 183 ~~~iV~DE~h~~~~~~----------~~~~~~~~~~~~~~~~~~i~~SaT~~~ 225 (413)
..+|++||+|.+.... ....+..++........++++.||-.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 3689999999886421 113344444555555667777787654
No 159
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.37 E-value=0.2 Score=46.13 Aligned_cols=100 Identities=9% Similarity=0.061 Sum_probs=73.6
Q ss_pred EEEeccccchHHHHHHH-HHh-hcccceEEEEccHHHHHHHHHHhhh---CCCeeEEecCCCCHHHHHHHHHHHhcCCCc
Q 015098 257 YVNVEKEEWKLETLCDL-YET-LAITQSVIFVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSR 331 (413)
Q Consensus 257 ~~~~~~~~~~~~~l~~~-~~~-~~~~~~lif~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 331 (413)
....++..+|.....-. +.. ..+.++||.+|+++-+..+++.++. .+..+..++|+.+..++....+.+.+|+.+
T Consensus 40 lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~ 119 (414)
T 3oiy_A 40 TMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH 119 (414)
T ss_dssp ECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCS
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCC
Confidence 34445555555432222 222 3557899999999999999999888 578999999999999999999999999999
Q ss_pred EEEEcCC-C---CCCCCCCCCcEEEEccC
Q 015098 332 VLITTDL-L---ARGIDVQQVSLVINYDL 356 (413)
Q Consensus 332 vli~t~~-~---~~G~d~~~~~~vi~~~~ 356 (413)
|+|+|+- + -.-++...++++|....
T Consensus 120 Iiv~Tp~~l~~~l~~~~~~~~~~iViDEa 148 (414)
T 3oiy_A 120 ILVFSTQFVSKNREKLSQKRFDFVFVDDV 148 (414)
T ss_dssp EEEEEHHHHHHCHHHHTTCCCSEEEESCH
T ss_pred EEEECHHHHHHHHHHhccccccEEEEeCh
Confidence 9999972 2 11245567888886654
No 160
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=94.06 E-value=0.1 Score=48.86 Aligned_cols=74 Identities=14% Similarity=0.050 Sum_probs=51.8
Q ss_pred HHHHHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCC
Q 015098 268 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ 347 (413)
Q Consensus 268 ~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~ 347 (413)
+.+...++. .+.++++.+.+...++++.+.|.+.++.+...... . .+. .-.+.++...+..|+-+|.
T Consensus 372 ~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~-~---------~~~--~g~v~i~~g~L~~GF~~p~ 438 (483)
T 3hjh_A 372 DALRKFLET-FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL-D---------EAS--DRGRYLMIGAAEHGFVDTV 438 (483)
T ss_dssp HHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG-G---------GCC--TTCEEEEESCCCSCEEETT
T ss_pred HHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCch-h---------hcC--CCcEEEEEcccccCcccCC
Confidence 445555532 24689999999999999999999888766544321 0 112 3357777788899999988
Q ss_pred CcEEEEc
Q 015098 348 VSLVINY 354 (413)
Q Consensus 348 ~~~vi~~ 354 (413)
...+|+.
T Consensus 439 ~klaVIT 445 (483)
T 3hjh_A 439 RNLALIC 445 (483)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 8887764
No 161
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.04 E-value=0.084 Score=46.76 Aligned_cols=19 Identities=21% Similarity=0.136 Sum_probs=16.2
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
..++++.||+|+|||..+-
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4689999999999997753
No 162
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.91 E-value=0.33 Score=40.73 Aligned_cols=43 Identities=14% Similarity=-0.109 Sum_probs=27.1
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHccccC---CCceeEEEEcC
Q 015098 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAP 116 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~liv~P 116 (413)
+..|.-+.+.+|+|+|||..+...+...+... .....++++.-
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 34577899999999999987655554322211 01236666654
No 163
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.86 E-value=0.053 Score=50.57 Aligned_cols=52 Identities=19% Similarity=0.006 Sum_probs=31.9
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHH
Q 015098 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVM 128 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~ 128 (413)
+..|.-+++.|++|+|||..++-.+....... +.+++|+..--. ..|+..++
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~slE~~-~~~l~~R~ 248 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSLEMP-AAQLTLRM 248 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEESSSC-HHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEECCCC-HHHHHHHH
Confidence 34467789999999999977665555443321 237777765322 33444443
No 164
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.38 E-value=0.63 Score=38.31 Aligned_cols=98 Identities=8% Similarity=0.147 Sum_probs=64.0
Q ss_pred EEEEeccccchHHHH-HHHHHhh----cccceEEEEccHHHHHHHHHHhhhC-----CCeeEEecCCCCHHHHHHHHHHH
Q 015098 256 FYVNVEKEEWKLETL-CDLYETL----AITQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREF 325 (413)
Q Consensus 256 ~~~~~~~~~~~~~~l-~~~~~~~----~~~~~lif~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f 325 (413)
.....++..+|.-.. ..++... ...+++|.+++++-+..+.+.++.. +..+..++|+.+...+. +.+
T Consensus 54 ~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~ 130 (220)
T 1t6n_A 54 VLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVL 130 (220)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHH
T ss_pred EEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHH
Confidence 334445555554332 2233221 2348999999999988888777653 67889999998765544 334
Q ss_pred hcCCCcEEEEcCC------CCCCCCCCCCcEEEEccC
Q 015098 326 RSGSSRVLITTDL------LARGIDVQQVSLVINYDL 356 (413)
Q Consensus 326 ~~~~~~vli~t~~------~~~G~d~~~~~~vi~~~~ 356 (413)
.++..+|+|+|+- -...+++..++++|....
T Consensus 131 ~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa 167 (220)
T 1t6n_A 131 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 167 (220)
T ss_dssp HHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESH
T ss_pred hcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCH
Confidence 5567899999962 123466778888886544
No 165
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=93.18 E-value=0.44 Score=37.26 Aligned_cols=73 Identities=14% Similarity=0.259 Sum_probs=53.8
Q ss_pred eeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHH----HcCCcEEEEccHHHHHHHHcCCCCCCcce
Q 015098 109 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIK 184 (413)
Q Consensus 109 ~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iii~T~~~l~~~~~~~~~~~~~~~ 184 (413)
.++||.|+++..+..+.+.+... +..+..++|+.......... .....|+|+|. ....++++.+++
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gld~~~~~ 105 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD------VAARGIDIENIS 105 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTTTCCCSCCS
T ss_pred CcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC------hhhcCCchhcCC
Confidence 38999999999999988888774 67888999987765544332 34678999992 223567777788
Q ss_pred EEEeccc
Q 015098 185 MFVLDEA 191 (413)
Q Consensus 185 ~iV~DE~ 191 (413)
+||.-+.
T Consensus 106 ~Vi~~~~ 112 (163)
T 2hjv_A 106 LVINYDL 112 (163)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 8876443
No 166
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=93.13 E-value=0.47 Score=37.57 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=53.8
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHH----HcCCcEEEEccHHHHHHHHcCCCCCCcc
Q 015098 108 QCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
..++||.|+++..+..+.+.+.+. +..+..++|+.......... ....+|+|+|. ....++++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN------VCARGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC------SCCTTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec------chhcCCCcccC
Confidence 449999999999998888877764 67888899987766554332 34678999992 22456778888
Q ss_pred eEEEecc
Q 015098 184 KMFVLDE 190 (413)
Q Consensus 184 ~~iV~DE 190 (413)
++||.-+
T Consensus 104 ~~Vi~~d 110 (175)
T 2rb4_A 104 TIVVNFD 110 (175)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 8888533
No 167
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.85 E-value=0.058 Score=47.98 Aligned_cols=51 Identities=27% Similarity=0.262 Sum_probs=33.0
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHH
Q 015098 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVM 128 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~ 128 (413)
+..|.-+++.|++|+|||..++-.+..... .+.+++|+..-- -..|+..++
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlEm-s~~ql~~Rl 93 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLEM-SAEQLALRA 93 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESSS-CHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCCC-CHHHHHHHH
Confidence 445677899999999999876655554443 233788876532 244444444
No 168
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=92.83 E-value=0.64 Score=36.36 Aligned_cols=74 Identities=15% Similarity=0.248 Sum_probs=53.7
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHH----HcCCcEEEEccHHHHHHHHcCCCCCCcc
Q 015098 108 QCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
..++||.|+++..+..+.+.+... +..+..++|+.......... .....|+|+|. ....++++.++
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD------LLARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG------GGTTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC------hhhcCCCcccC
Confidence 348999999999998888888764 67788899887765544332 35678999992 23356677778
Q ss_pred eEEEeccc
Q 015098 184 KMFVLDEA 191 (413)
Q Consensus 184 ~~iV~DE~ 191 (413)
++||.-+.
T Consensus 100 ~~Vi~~~~ 107 (165)
T 1fuk_A 100 SLVINYDL 107 (165)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88776443
No 169
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.44 E-value=3.6 Score=36.34 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=29.7
Q ss_pred cHHHHHHHHcCCCCCCcceEEEeccchHHhc---cCcHHHHHHHHhhCCCCceEEEEEeeC
Q 015098 166 PGRVFDMLRRQSLRPDYIKMFVLDEADEMLS---RGFKDQIYDIFQLLPAKVQVGVFSATM 223 (413)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~~iV~DE~h~~~~---~~~~~~~~~~~~~~~~~~~~i~~SaT~ 223 (413)
.+.+...+..... ..-+||+||+|.+.. ..+...+..+....+ +.. ++++++.
T Consensus 124 ~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~-~i~~g~~ 179 (357)
T 2fna_A 124 FANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIK-FIMSGSE 179 (357)
T ss_dssp HHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEE-EEEEESS
T ss_pred HHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeE-EEEEcCc
Confidence 3445555544211 235899999999864 345556666655542 443 4445554
No 170
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.29 E-value=0.78 Score=48.13 Aligned_cols=102 Identities=18% Similarity=0.129 Sum_probs=75.9
Q ss_pred EEEEEeccccchHHHHH-HHHH-hhcccceEEEEccHHHHHHHHHHhhh----CCCeeEEecCCCCHHHHHHHHHHHhcC
Q 015098 255 QFYVNVEKEEWKLETLC-DLYE-TLAITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSG 328 (413)
Q Consensus 255 ~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~lif~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~ 328 (413)
......+...+|..... ..+. ...+.+++|.+|+..-+...++.+.+ .+..+..+++..+..++...++.+.+|
T Consensus 626 d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g 705 (1151)
T 2eyq_A 626 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG 705 (1151)
T ss_dssp EEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcC
Confidence 45555666666664432 2222 23456899999999888877777653 367889999999999999999999999
Q ss_pred CCcEEEEcC-CCCCCCCCCCCcEEEEccC
Q 015098 329 SSRVLITTD-LLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 329 ~~~vli~t~-~~~~G~d~~~~~~vi~~~~ 356 (413)
+.+|+|+|. .+...+.+.++..||....
T Consensus 706 ~~dIvV~T~~ll~~~~~~~~l~lvIiDEa 734 (1151)
T 2eyq_A 706 KIDILIGTHKLLQSDVKFKDLGLLIVDEE 734 (1151)
T ss_dssp CCSEEEECTHHHHSCCCCSSEEEEEEESG
T ss_pred CCCEEEECHHHHhCCccccccceEEEech
Confidence 999999996 5566677888888876543
No 171
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=92.13 E-value=0.54 Score=49.02 Aligned_cols=101 Identities=10% Similarity=0.079 Sum_probs=75.3
Q ss_pred EEEEeccccchHHHHHHHHHh--hcccceEEEEccHHHHHHHHHHhhh---CCCeeEEecCCCCHHHHHHHHHHHhcCCC
Q 015098 256 FYVNVEKEEWKLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSS 330 (413)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 330 (413)
.....++..+|.......+.. ..+.++||.+|+++-+..+++.++. .+..+..++|+.+..++...++.+.+|+.
T Consensus 96 vlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~ 175 (1104)
T 4ddu_A 96 FTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDY 175 (1104)
T ss_dssp EEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCC
T ss_pred EEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCC
Confidence 344555666665544332222 3556899999999999999999988 56789999999999888999999999999
Q ss_pred cEEEEcCC-CC---CCCCCCCCcEEEEccC
Q 015098 331 RVLITTDL-LA---RGIDVQQVSLVINYDL 356 (413)
Q Consensus 331 ~vli~t~~-~~---~G~d~~~~~~vi~~~~ 356 (413)
+|+|+|+- +. .-+++.+++++|....
T Consensus 176 ~IlV~Tp~rL~~~l~~l~~~~l~~lViDEa 205 (1104)
T 4ddu_A 176 HILVFSTQFVSKNREKLSQKRFDFVFVDDV 205 (1104)
T ss_dssp SEEEEEHHHHHHSHHHHHTSCCSEEEESCH
T ss_pred CEEEECHHHHHHHHHhhcccCcCEEEEeCC
Confidence 99999972 21 1144567888887654
No 172
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.13 E-value=0.12 Score=45.45 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=18.4
Q ss_pred CCcEEEeCCCCCcchHHhHHHHH
Q 015098 77 GLDVIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~ 99 (413)
+.++++.||+|+|||..+...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999987644333
No 173
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.05 E-value=0.098 Score=48.16 Aligned_cols=56 Identities=14% Similarity=0.261 Sum_probs=36.9
Q ss_pred hhhccCcccCCCCHHHHHHHHHC---CCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHh
Q 015098 36 DEVYDSFDAMGLQENLLRGIYAY---GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~ 94 (413)
..+-.+|++.+--+...+.|... .+..|-.++...+ ...+.+++.||+|+|||+.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 45667899998777777766542 2223333333322 22578999999999999875
No 174
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.02 E-value=0.095 Score=45.83 Aligned_cols=43 Identities=12% Similarity=-0.031 Sum_probs=29.7
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHH
Q 015098 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 120 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l 120 (413)
.| .+++.+|+|+|||..++-.+....... .+.+++|+..-..+
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g-~g~~vlyId~E~s~ 70 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQY-PDAVCLFYDSEFGI 70 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHHHHC-TTCEEEEEESSCCC
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHHhcC-CCceEEEEeccchh
Confidence 35 579999999999988766665544331 23488888775544
No 175
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=91.88 E-value=0.25 Score=52.15 Aligned_cols=54 Identities=26% Similarity=0.201 Sum_probs=43.5
Q ss_pred cEEEeCCCCCcchHHhHHHHHHccccC---------CCceeEEEEcCcHHHHHHHHHHHHHhh
Q 015098 79 DVIQQAQSGTGKTATFCSGILQQLDYG---------LVQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~~~~~~~~~~~---------~~~~~~liv~P~~~l~~q~~~~~~~~~ 132 (413)
..+|.|+.|||||.+...-++..+... ..-.++|+|+=|++-+.++.+++.+..
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 449999999999999888888777532 123489999999999999999887753
No 176
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=91.75 E-value=0.67 Score=38.09 Aligned_cols=70 Identities=27% Similarity=0.353 Sum_probs=52.8
Q ss_pred eeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHH----HcCCcEEEEccHHHHHHHHcCCCCCCcce
Q 015098 109 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIK 184 (413)
Q Consensus 109 ~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iii~T~~~l~~~~~~~~~~~~~~~ 184 (413)
.++||.|+++.-+..+.+.+... +..+..++|+.......... ....+|+|+|. ....+++..+++
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gidi~~v~ 101 (212)
T 3eaq_A 32 DRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD------VAARGLDIPQVD 101 (212)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT------TTTCSSSCCCBS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC------hhhcCCCCccCc
Confidence 49999999999998888888764 67888999988766554432 34678999992 234567788888
Q ss_pred EEEe
Q 015098 185 MFVL 188 (413)
Q Consensus 185 ~iV~ 188 (413)
+||.
T Consensus 102 ~Vi~ 105 (212)
T 3eaq_A 102 LVVH 105 (212)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 177
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=91.71 E-value=1.1 Score=35.26 Aligned_cols=74 Identities=9% Similarity=0.072 Sum_probs=53.8
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----HHcCCcEEEEccHHHHHHHHcCCCCCCcc
Q 015098 108 QCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
..++||.|+++..+..+.+.+... +..+..++|+......... ......|+|+|. ....++++.++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------LFGRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS------CCSTTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC------chhcCcchhhC
Confidence 348999999999999988888775 6788889988776554433 235678999993 22346677777
Q ss_pred eEEEeccc
Q 015098 184 KMFVLDEA 191 (413)
Q Consensus 184 ~~iV~DE~ 191 (413)
++||.-+.
T Consensus 101 ~~Vi~~d~ 108 (172)
T 1t5i_A 101 NIAFNYDM 108 (172)
T ss_dssp SEEEESSC
T ss_pred CEEEEECC
Confidence 88776444
No 178
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=91.57 E-value=1.3 Score=37.30 Aligned_cols=75 Identities=11% Similarity=0.254 Sum_probs=53.9
Q ss_pred cccceEEEEccHHHHHHHHHHhhhC----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCC-----C--CCCCCCC
Q 015098 278 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----L--ARGIDVQ 346 (413)
Q Consensus 278 ~~~~~lif~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-----~--~~G~d~~ 346 (413)
.+.++||.+++++-+..+.+.++.. +..+..++|+.+...+...+ .+..+|+|+|+- + ..++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 3457999999999888887777653 77888999988765543322 346889999962 1 2456778
Q ss_pred CCcEEEEccC
Q 015098 347 QVSLVINYDL 356 (413)
Q Consensus 347 ~~~~vi~~~~ 356 (413)
.++++|....
T Consensus 186 ~~~~lViDEa 195 (249)
T 3ber_A 186 ALKYLVMDEA 195 (249)
T ss_dssp TCCEEEECSH
T ss_pred ccCEEEEcCh
Confidence 8888886543
No 179
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=91.51 E-value=1.9 Score=34.62 Aligned_cols=72 Identities=21% Similarity=0.247 Sum_probs=53.2
Q ss_pred eeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----HHcCCcEEEEccHHHHHHHHcCCCCCCcce
Q 015098 109 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVGTPGRVFDMLRRQSLRPDYIK 184 (413)
Q Consensus 109 ~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~~ 184 (413)
.++||.|+++.-+..+.+.+... ++.+..++|+......... ......|+|+| +.+ ..++++.+++
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~-~~Gldi~~v~ 124 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVA-SKGLDFPAIQ 124 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHH-HTTCCCCCCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cch-hcCCCcccCC
Confidence 38999999999999988888765 6788889998776554433 23578899999 222 2466777788
Q ss_pred EEEecc
Q 015098 185 MFVLDE 190 (413)
Q Consensus 185 ~iV~DE 190 (413)
+||.-+
T Consensus 125 ~VI~~d 130 (191)
T 2p6n_A 125 HVINYD 130 (191)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 877643
No 180
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.23 E-value=0.14 Score=43.09 Aligned_cols=51 Identities=20% Similarity=0.125 Sum_probs=32.3
Q ss_pred hcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHH
Q 015098 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMR 129 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~ 129 (413)
..|.-+++.||+|+|||..++..+...... +.+++|+.-... ..+..+.+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~~-~~~~~~~~~ 71 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEEH-PVQVRQNMA 71 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSSC-HHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccCC-HHHHHHHHH
Confidence 457788999999999998765444443332 237777765432 344444444
No 181
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.97 E-value=0.53 Score=53.97 Aligned_cols=76 Identities=14% Similarity=0.049 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHh----hhhhhhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHH
Q 015098 47 LQENLLRGIYAYGFEKPSAIQQR----GIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQ 122 (413)
Q Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~----~~~~i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~ 122 (413)
|...+.+.+.+.|+ ++.+.+.. .++.+...+.++++||||+|||.++-..+...-..........++-|..--..
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPKait~~ 951 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAITKD 951 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTTTSCHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCCCCchh
Confidence 44566677778888 56666643 33334447789999999999998863322221111122235566777543333
Q ss_pred H
Q 015098 123 Q 123 (413)
Q Consensus 123 q 123 (413)
|
T Consensus 952 e 952 (3245)
T 3vkg_A 952 Q 952 (3245)
T ss_dssp H
T ss_pred h
Confidence 3
No 182
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.64 E-value=1.6 Score=37.87 Aligned_cols=22 Identities=23% Similarity=0.068 Sum_probs=16.8
Q ss_pred cCCcEEEeCCCCCcchHHhHHH
Q 015098 76 KGLDVIQQAQSGTGKTATFCSG 97 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~ 97 (413)
.++.+.+.++.|+|||..+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~l 118 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKL 118 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4566788899999999765433
No 183
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=90.36 E-value=0.74 Score=36.86 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=51.1
Q ss_pred CCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHH----HHHHcCCcEE
Q 015098 87 GTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ----RILQAGVHVV 162 (413)
Q Consensus 87 GsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ii 162 (413)
.+.|-.. +.-++... ..+.++||.|+++.-+..+.+.+... ++.+..++|+....... ........|+
T Consensus 29 ~~~K~~~-L~~ll~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 100 (185)
T 2jgn_A 29 ESDKRSF-LLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPIL 100 (185)
T ss_dssp GGGHHHH-HHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEE
T ss_pred cHHHHHH-HHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 4566543 34444332 23448999999999998888888764 67788888876544332 2234577899
Q ss_pred EEccHHHHHHHHcCCCCCCcceEEEec
Q 015098 163 VGTPGRVFDMLRRQSLRPDYIKMFVLD 189 (413)
Q Consensus 163 i~T~~~l~~~~~~~~~~~~~~~~iV~D 189 (413)
|+|. .+ ..++++.++++||.=
T Consensus 101 vaT~-----~~-~~Gldi~~~~~VI~~ 121 (185)
T 2jgn_A 101 VATA-----VA-ARGLDISNVKHVINF 121 (185)
T ss_dssp EEEC------------CCCSBSEEEES
T ss_pred EEcC-----hh-hcCCCcccCCEEEEe
Confidence 9993 22 245667778877753
No 184
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=90.33 E-value=2.5 Score=35.28 Aligned_cols=74 Identities=8% Similarity=0.064 Sum_probs=53.4
Q ss_pred ccceEEEEccHHHHHHHHHHhhh----CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCC-----C-CCCCCCCCC
Q 015098 279 ITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----L-ARGIDVQQV 348 (413)
Q Consensus 279 ~~~~lif~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-----~-~~G~d~~~~ 348 (413)
+.++||.+|+++-+..+.+.++. .+..+..++|+.+...+...+. + ..+|+|+|+- + ...+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45799999999988887766654 4788899999988766544443 2 5789999961 1 234567788
Q ss_pred cEEEEccC
Q 015098 349 SLVINYDL 356 (413)
Q Consensus 349 ~~vi~~~~ 356 (413)
+++|....
T Consensus 178 ~~lViDEa 185 (242)
T 3fe2_A 178 TYLVLDEA 185 (242)
T ss_dssp CEEEETTH
T ss_pred cEEEEeCH
Confidence 88886543
No 185
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=89.98 E-value=2.2 Score=40.86 Aligned_cols=90 Identities=10% Similarity=0.116 Sum_probs=62.5
Q ss_pred HHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----HHcCCcEEEEccHHHH
Q 015098 95 CSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVGTPGRVF 170 (413)
Q Consensus 95 ~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~ 170 (413)
+-.+...+.....+.++||.|+++.-+..+++.+.+... .+..+..++|+......... .....+|+|+|.
T Consensus 326 ~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~---- 400 (563)
T 3i5x_A 326 VEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD---- 400 (563)
T ss_dssp HHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG----
T ss_pred HHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc----
Confidence 333333333334455999999999999999998887643 26778888988776554433 345789999993
Q ss_pred HHHHcCCCCCCcceEEEeccc
Q 015098 171 DMLRRQSLRPDYIKMFVLDEA 191 (413)
Q Consensus 171 ~~~~~~~~~~~~~~~iV~DE~ 191 (413)
....++++.++++||.-..
T Consensus 401 --~~~~GiDip~v~~VI~~~~ 419 (563)
T 3i5x_A 401 --VGARGMDFPNVHEVLQIGV 419 (563)
T ss_dssp --GGTSSCCCTTCCEEEEESC
T ss_pred --hhhcCCCcccCCEEEEECC
Confidence 3346788888888875543
No 186
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.89 E-value=0.24 Score=46.82 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=24.0
Q ss_pred HHHHhhhhh-hhcCCcEEEeCCCCCcchHHhHHHHHHcc
Q 015098 65 AIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 65 ~~Q~~~~~~-i~~~~~~li~~~tGsGKT~~~~~~~~~~~ 102 (413)
+.+...+.. +..|..+++.||||||||... .+++..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL-~aL~~~i 284 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTL-NAIMMFI 284 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHH-HHHGGGS
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhC
Confidence 334333433 456889999999999999763 3344333
No 187
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=89.62 E-value=0.31 Score=45.26 Aligned_cols=44 Identities=14% Similarity=0.223 Sum_probs=30.1
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHH
Q 015098 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQ 122 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~ 122 (413)
...++++.|+||||||......+.+.+.. +..++|+=|..+...
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~---g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLR---GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHT---TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHC---CCcEEEEeCCCchhH
Confidence 46799999999999998753333333332 237888888777653
No 188
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=89.48 E-value=0.83 Score=43.44 Aligned_cols=80 Identities=13% Similarity=0.079 Sum_probs=63.6
Q ss_pred EEEEeccccchHHHH-HHHHHhhcccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 015098 256 FYVNVEKEEWKLETL-CDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 334 (413)
Q Consensus 256 ~~~~~~~~~~~~~~l-~~~~~~~~~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli 334 (413)
.+...++...|.-.. ...+ ...+++||.+|++.-+....+.|+..|..+..+++..+..++..+...+..|..++++
T Consensus 43 ~lv~apTGsGKTl~~~lp~l--~~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv 120 (523)
T 1oyw_A 43 CLVVMPTGGGKSLCYQIPAL--LLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLY 120 (523)
T ss_dssp EEEECSCHHHHHHHHHHHHH--HSSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEE
T ss_pred EEEECCCCcHHHHHHHHHHH--HhCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 344455555554322 2222 2347899999999999999999999999999999999999999999999999999999
Q ss_pred EcC
Q 015098 335 TTD 337 (413)
Q Consensus 335 ~t~ 337 (413)
+|+
T Consensus 121 ~Tp 123 (523)
T 1oyw_A 121 IAP 123 (523)
T ss_dssp ECH
T ss_pred ECH
Confidence 996
No 189
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.18 E-value=0.44 Score=39.10 Aligned_cols=31 Identities=19% Similarity=0.089 Sum_probs=26.0
Q ss_pred cHHHHhhhhhhhcCCcEEEeCCCCCcchHHh
Q 015098 64 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 64 ~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~ 94 (413)
+.-|..++..+..|..+.+.||.|+|||..+
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 4446778888888999999999999999764
No 190
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.93 E-value=0.7 Score=39.32 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=30.2
Q ss_pred HHHHHHHHHCCCCCCcHHH-HhhhhhhhcCC-----cEEEeCCCCCcchHHhH
Q 015098 49 ENLLRGIYAYGFEKPSAIQ-QRGIVPFCKGL-----DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 49 ~~~~~~l~~~~~~~~~~~Q-~~~~~~i~~~~-----~~li~~~tGsGKT~~~~ 95 (413)
..+.+.|+-.|+. +.+ ..++..+++++ .+++.||+|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3677777777763 444 23355555543 59999999999998764
No 191
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.93 E-value=0.2 Score=42.26 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=31.2
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015098 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~ 130 (413)
.|.-+++.|++|+|||..++-.+.+...... ..++|+.-.. -..+..+.+..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~--~~v~~~s~E~-~~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG--EPGVFVTLEE-RARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSS-CHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcC--CCceeecccC-CHHHHHHHHHH
Confidence 3567899999999999776554444333221 2677766432 24444444443
No 192
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.81 E-value=0.31 Score=40.52 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=25.7
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcC
Q 015098 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 116 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P 116 (413)
+..|.-+++.||+|+|||..+...+...... +.+++++..
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~ 59 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTT 59 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEES
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEc
Confidence 4457789999999999997654433332222 226666653
No 193
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=88.80 E-value=3.3 Score=33.34 Aligned_cols=97 Identities=10% Similarity=0.065 Sum_probs=62.1
Q ss_pred EEEEeccccchHHH-HHHHHHh-------hcccceEEEEccHHHHHHHHHHhhhC--CCeeEEecCCCCHHHHHHHHHHH
Q 015098 256 FYVNVEKEEWKLET-LCDLYET-------LAITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREF 325 (413)
Q Consensus 256 ~~~~~~~~~~~~~~-l~~~~~~-------~~~~~~lif~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f 325 (413)
.....++..+|.-. +..++.. ..+.+++|.+|+++.+..+.+.++.. +..+..++|+.+.......+.
T Consensus 41 ~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 118 (207)
T 2gxq_A 41 LIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL-- 118 (207)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH--
T ss_pred EEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh--
Confidence 44455565666544 3333333 23468999999999999998888765 356777888776544333222
Q ss_pred hcCCCcEEEEcCC------CCCCCCCCCCcEEEEccC
Q 015098 326 RSGSSRVLITTDL------LARGIDVQQVSLVINYDL 356 (413)
Q Consensus 326 ~~~~~~vli~t~~------~~~G~d~~~~~~vi~~~~ 356 (413)
...+|+|+|+- -...+++..++.+|....
T Consensus 119 --~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEa 153 (207)
T 2gxq_A 119 --RGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEA 153 (207)
T ss_dssp --HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESH
T ss_pred --CCCCEEEECHHHHHHHHHcCCcchhhceEEEEECh
Confidence 25789999961 123456777888886543
No 194
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=88.78 E-value=3.1 Score=40.07 Aligned_cols=79 Identities=9% Similarity=0.112 Sum_probs=58.5
Q ss_pred CCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----HHcCCcEEEEccHHHHHHHHcCCCCCC
Q 015098 106 LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVGTPGRVFDMLRRQSLRPD 181 (413)
Q Consensus 106 ~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~ 181 (413)
..+.++||.|+++.-+..+++.+.+... .+..+..++|+......... .....+|+|+|. ....++++.
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~------~~~~GiDip 358 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------VGARGMDFP 358 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------GGTSSCCCT
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc------hhhcCCCcc
Confidence 4455999999999999999998887643 26778888998776554333 345788999993 334577888
Q ss_pred cceEEEeccc
Q 015098 182 YIKMFVLDEA 191 (413)
Q Consensus 182 ~~~~iV~DE~ 191 (413)
++++||.-..
T Consensus 359 ~v~~VI~~~~ 368 (579)
T 3sqw_A 359 NVHEVLQIGV 368 (579)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEcCC
Confidence 8888886554
No 195
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.78 E-value=0.38 Score=42.40 Aligned_cols=53 Identities=15% Similarity=-0.034 Sum_probs=34.1
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015098 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~ 130 (413)
+..|.-+++.|++|+|||..++..+......+ .+++|+..- .-..|+..++..
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESS-SCHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECC-CCHHHHHHHHHH
Confidence 44577899999999999977665555544333 378887753 234444444443
No 196
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=88.70 E-value=2.8 Score=38.12 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=54.1
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----HHcCCcEEEEccHHHHHHHHcCCCCCCc
Q 015098 107 VQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVGTPGRVFDMLRRQSLRPDY 182 (413)
Q Consensus 107 ~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~ 182 (413)
.+.++||.|+++..+..+.+.+.+. +..+..++|+......... .....+|+|+|. .+ ..++++.+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VA-ARGLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HH-HTTSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hh-hcCCCccc
Confidence 3458999999999999888888774 6788889998876554433 235678999993 33 35678888
Q ss_pred ceEEEe
Q 015098 183 IKMFVL 188 (413)
Q Consensus 183 ~~~iV~ 188 (413)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888875
No 197
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=88.65 E-value=0.24 Score=52.23 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=31.5
Q ss_pred EEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHH
Q 015098 81 IQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 119 (413)
Q Consensus 81 li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 119 (413)
+|.|..|||||.+.+--+.+.+..+....+++++||...
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc
Confidence 788999999999988777777766554469999999764
No 198
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=88.47 E-value=0.63 Score=39.68 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=16.7
Q ss_pred cCCcEEEeCCCCCcchHHh
Q 015098 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~ 94 (413)
.+.++++.||+|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4688999999999999765
No 199
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.46 E-value=0.58 Score=42.95 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=26.8
Q ss_pred HHHhhhhhhh--cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEE
Q 015098 66 IQQRGIVPFC--KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVL 114 (413)
Q Consensus 66 ~Q~~~~~~i~--~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv 114 (413)
-+..++..+. .+..+++.||||||||... ..++..+... .++++++
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL-~allg~l~~~--~g~I~~~ 201 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQELNSS--ERNILTV 201 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHHCCT--TSCEEEE
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHhhcCCC--CCEEEEe
Confidence 3444555443 3556899999999999763 3344333222 2255554
No 200
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=88.45 E-value=0.34 Score=39.42 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=17.4
Q ss_pred cEEEeCCCCCcchHHhHHHHHHc
Q 015098 79 DVIQQAQSGTGKTATFCSGILQQ 101 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~~~~~~~ 101 (413)
-.++.|++|||||..+...+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 35899999999998865544443
No 201
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=88.40 E-value=0.19 Score=44.00 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=30.3
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHH-Hhhhhh--hhcCCcEEEeCCCCCcchHHhH
Q 015098 39 YDSFDAMGLQENLLRGIYAYGFEKPSAIQ-QRGIVP--FCKGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q-~~~~~~--i~~~~~~li~~~tGsGKT~~~~ 95 (413)
..+|++++=.+...+.+...-. ++.. .+.+.. +..++.+++.||+|+|||..+-
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 4567777655555555543200 0100 011111 2346789999999999998753
No 202
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.34 E-value=0.41 Score=39.62 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=20.6
Q ss_pred cEEEeCCCCCcchHHhHHHHHHccccC
Q 015098 79 DVIQQAQSGTGKTATFCSGILQQLDYG 105 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~~~~~~~~~~~ 105 (413)
++++.++.|.|||..++..+......+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G 34 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG 34 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 589999999999998766655554443
No 203
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.34 E-value=0.3 Score=39.02 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=16.2
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
+.++++.||+|+|||..+-
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4679999999999997753
No 204
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.24 E-value=0.31 Score=44.22 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=33.7
Q ss_pred hhhccCcccCCCCHHHHHHHHHC---CCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHh
Q 015098 36 DEVYDSFDAMGLQENLLRGIYAY---GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~ 94 (413)
..+-.+|++.+=-+...+.|... .+..|-.++...+ ...+.+++.||+|+|||+.+
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHH
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHH
Confidence 34567888886445555555432 2222222222222 23578999999999999875
No 205
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.21 E-value=0.32 Score=40.07 Aligned_cols=37 Identities=16% Similarity=0.048 Sum_probs=25.3
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcC
Q 015098 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 116 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P 116 (413)
+..|.-+++.||+|+|||..+...+. . .+.+++++.-
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~---~---~~~~v~~i~~ 53 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL---L---SGKKVAYVDT 53 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH---H---HCSEEEEEES
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH---H---cCCcEEEEEC
Confidence 34577889999999999977654443 1 2236777654
No 206
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.18 E-value=0.27 Score=45.37 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=34.9
Q ss_pred hhhccCcccCCCCHHHHHHHHHC---CCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHh
Q 015098 36 DEVYDSFDAMGLQENLLRGIYAY---GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~ 94 (413)
..+-.+|++.+=-+.+.+.|... .+..|-.++... +...+.+|+.||+|+|||+.+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 45567888887666666666542 111222222211 123688999999999999875
No 207
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=88.11 E-value=0.22 Score=40.71 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=18.7
Q ss_pred hhhcCCcEEEeCCCCCcchHHhH
Q 015098 73 PFCKGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 73 ~i~~~~~~li~~~tGsGKT~~~~ 95 (413)
++..|.-++++||+|+|||..+-
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHH
Confidence 35678889999999999997653
No 208
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.04 E-value=0.27 Score=39.80 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=16.6
Q ss_pred cCCcEEEeCCCCCcchHHhH
Q 015098 76 KGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~ 95 (413)
.|+.+++.||||+|||..++
T Consensus 33 ~g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 36778999999999997653
No 209
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=87.80 E-value=0.94 Score=43.77 Aligned_cols=59 Identities=3% Similarity=0.025 Sum_probs=54.0
Q ss_pred ccceEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHH--hcCCCcEEEEcC
Q 015098 279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREF--RSGSSRVLITTD 337 (413)
Q Consensus 279 ~~~~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f--~~~~~~vli~t~ 337 (413)
.+.+||.+|+++-+....+.|...|+.+..++|+.+..++..++..+ ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 56899999999999999999999999999999999999998888888 468899999998
No 210
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.68 E-value=0.23 Score=45.79 Aligned_cols=57 Identities=23% Similarity=0.327 Sum_probs=34.3
Q ss_pred chhhccCcccCCCCHHHHHHHHHC---CCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHh
Q 015098 35 YDEVYDSFDAMGLQENLLRGIYAY---GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~ 94 (413)
...+-.+|++.+=-+...+.+... .+..|-.++... +...+.+|+.||+|+|||+.+
T Consensus 173 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 173 FEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp EESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred ccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 345677888887555555555432 122222222222 123588999999999999875
No 211
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=87.59 E-value=0.33 Score=39.44 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=17.4
Q ss_pred hcCCcEEEeCCCCCcchHHhH
Q 015098 75 CKGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~~ 95 (413)
..++.+++.|++|||||..+-
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 357789999999999998763
No 212
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=87.51 E-value=1.2 Score=37.03 Aligned_cols=94 Identities=11% Similarity=0.031 Sum_probs=61.5
Q ss_pred EEEeccccchHHH-HHHHHHh----hcccceEEEEccHHHHHHHHHHhhhC-----CCeeEEecCCCCHHHHHHHHHHHh
Q 015098 257 YVNVEKEEWKLET-LCDLYET----LAITQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREFR 326 (413)
Q Consensus 257 ~~~~~~~~~~~~~-l~~~~~~----~~~~~~lif~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~ 326 (413)
....++..+|.-. +..++.. ..+.++||.+++++-+..+.+.++.. +..+..++|+.+..++...+
T Consensus 65 l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---- 140 (230)
T 2oxc_A 65 IVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---- 140 (230)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT----
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc----
Confidence 3444555555433 2223322 23468999999999998888887653 57788899988766554433
Q ss_pred cCCCcEEEEcCC-C-----CCCCCCCCCcEEEEcc
Q 015098 327 SGSSRVLITTDL-L-----ARGIDVQQVSLVINYD 355 (413)
Q Consensus 327 ~~~~~vli~t~~-~-----~~G~d~~~~~~vi~~~ 355 (413)
...+|+|+|+- + ...+++..++++|...
T Consensus 141 -~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDE 174 (230)
T 2oxc_A 141 -KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDE 174 (230)
T ss_dssp -TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESS
T ss_pred -cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCC
Confidence 36789999972 1 2345677788887654
No 213
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.48 E-value=0.29 Score=41.84 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=17.9
Q ss_pred hhcCCcEEEeCCCCCcchHHh
Q 015098 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~ 94 (413)
+..|..+++.||+|||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 456888999999999999764
No 214
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=87.31 E-value=0.61 Score=43.92 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=19.1
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHH
Q 015098 76 KGLDVIQQAQSGTGKTATFCSGILQ 100 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~ 100 (413)
++.+++|.|+||||||.+.-..+..
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~s 190 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILS 190 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999875444433
No 215
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=87.29 E-value=0.3 Score=39.74 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=19.2
Q ss_pred HhhhhhhhcC----CcEEEeCCCCCcchHHh
Q 015098 68 QRGIVPFCKG----LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 68 ~~~~~~i~~~----~~~li~~~tGsGKT~~~ 94 (413)
...+..+.++ +.+++.||+|+|||..+
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 3344444443 46899999999999775
No 216
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=87.19 E-value=0.65 Score=41.01 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=32.5
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccC---------CCc----eeEEEEcCcHHH-HHHHHHHHHH
Q 015098 77 GLDVIQQAQSGTGKTATFCSGILQQLDYG---------LVQ----CQALVLAPTREL-AQQIEKVMRA 130 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~---------~~~----~~~liv~P~~~l-~~q~~~~~~~ 130 (413)
|.-+++.|++|+|||..++..+....... ..+ .+++|+.--..+ ..++.+.+..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~ 165 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEH 165 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999987765555432211 111 488888765432 3444444444
No 217
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=87.12 E-value=0.31 Score=43.11 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=16.3
Q ss_pred CCcEEEeCCCCCcchHHhHH
Q 015098 77 GLDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~ 96 (413)
++.++|.||||+|||..+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45689999999999987643
No 218
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=87.10 E-value=0.3 Score=46.03 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=20.7
Q ss_pred hhhhhhhcCCcEEEeCCCCCcchHHh
Q 015098 69 RGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 69 ~~~~~i~~~~~~li~~~tGsGKT~~~ 94 (413)
.+...+..+.++++.||+|+|||..+
T Consensus 33 ~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 33 LCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHhcCCeeEeecCchHHHHHHH
Confidence 34444566899999999999999765
No 219
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.06 E-value=0.57 Score=42.67 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=28.8
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHH
Q 015098 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 119 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 119 (413)
.+.++++.|+||+|||...-..+..... .+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~---~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM---QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH---CCCEEEEEeCCcC
Confidence 5678999999999999776544444332 2347888777654
No 220
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=87.06 E-value=0.68 Score=40.93 Aligned_cols=54 Identities=17% Similarity=0.086 Sum_probs=32.2
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHcccc---CCCceeEEEEcCcHHH-HHHHHHHHHH
Q 015098 77 GLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTREL-AQQIEKVMRA 130 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~---~~~~~~~liv~P~~~l-~~q~~~~~~~ 130 (413)
|.-+++.||+|+|||..++..+...... +..+.+++|+.--..+ ..++.+.+..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999998776555543322 1113477887654332 3344444443
No 221
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=86.97 E-value=0.49 Score=42.44 Aligned_cols=39 Identities=18% Similarity=0.064 Sum_probs=28.1
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCc
Q 015098 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 117 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~ 117 (413)
.|.-+++.+++|+|||..++..+......+ .+++|+..-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g---~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeCC
Confidence 567789999999999988766555544332 377777763
No 222
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=86.76 E-value=0.24 Score=44.02 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=18.5
Q ss_pred hhhcCCcEEEeCCCCCcchHHh
Q 015098 73 PFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 73 ~i~~~~~~li~~~tGsGKT~~~ 94 (413)
.+..++++++.||+|+|||..+
T Consensus 42 ~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHcCCeEEEECCCCCcHHHHH
Confidence 3445889999999999999765
No 223
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=86.66 E-value=0.31 Score=38.66 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=15.4
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015098 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
+..+++.|++|||||.++
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999875
No 224
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.63 E-value=0.57 Score=42.82 Aligned_cols=57 Identities=25% Similarity=0.279 Sum_probs=33.9
Q ss_pred chhhccCcccCCCCHHHHHHHHHC---CCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHh
Q 015098 35 YDEVYDSFDAMGLQENLLRGIYAY---GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~ 94 (413)
...+-.+|++.+=-+...+.|... .+..|--++...+ .-.+.+|+.||+|+|||+.+
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 345667888886444444444331 2223332332222 22578999999999999875
No 225
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.57 E-value=0.31 Score=44.77 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=32.6
Q ss_pred hhhccCcccCCCCHHHHHHHHHC---CCCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHh
Q 015098 36 DEVYDSFDAMGLQENLLRGIYAY---GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~ 94 (413)
..+-.+|++.+=-+.+.+.+... .+..|-.++...+ ...+.+++.||+|+|||+.+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHH
Confidence 34556888886445555555331 1112222222221 23578999999999999875
No 226
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=86.55 E-value=6 Score=35.51 Aligned_cols=98 Identities=8% Similarity=0.153 Sum_probs=65.0
Q ss_pred EEEEeccccchHHHH-HHHHHhh----cccceEEEEccHHHHHHHHHHhhhC-----CCeeEEecCCCCHHHHHHHHHHH
Q 015098 256 FYVNVEKEEWKLETL-CDLYETL----AITQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREF 325 (413)
Q Consensus 256 ~~~~~~~~~~~~~~l-~~~~~~~----~~~~~lif~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f 325 (413)
.....++..+|.-.. ..++... .+.++||.+|++.-+..+.+.++.. +..+..++|+.+...... .+
T Consensus 48 ~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~ 124 (391)
T 1xti_A 48 VLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VL 124 (391)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HH
T ss_pred EEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HH
Confidence 444555555565433 3333321 3458999999999988887777653 678899999987655443 34
Q ss_pred hcCCCcEEEEcCC-C-----CCCCCCCCCcEEEEccC
Q 015098 326 RSGSSRVLITTDL-L-----ARGIDVQQVSLVINYDL 356 (413)
Q Consensus 326 ~~~~~~vli~t~~-~-----~~G~d~~~~~~vi~~~~ 356 (413)
.++..+|+|+|.- + ...+++..+++||....
T Consensus 125 ~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEa 161 (391)
T 1xti_A 125 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 161 (391)
T ss_dssp HHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSH
T ss_pred hcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCH
Confidence 5577899999962 1 33456778888886543
No 227
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=86.54 E-value=0.4 Score=38.25 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=16.7
Q ss_pred CCcEEEeCCCCCcchHHhHH
Q 015098 77 GLDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~ 96 (413)
++.+++.|++|||||.++-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56789999999999987643
No 228
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=86.53 E-value=0.41 Score=38.17 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=16.3
Q ss_pred cCCcEEEeCCCCCcchHHh
Q 015098 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~ 94 (413)
.|+-++++||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999765
No 229
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=86.44 E-value=1.7 Score=37.80 Aligned_cols=74 Identities=24% Similarity=0.294 Sum_probs=53.8
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----HHcCCcEEEEccHHHHHHHHcCCCCCCcc
Q 015098 108 QCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
..++||.|+++.-+..+.+.+... ++.+..++|+......... .....+|+|+|. +...+++..++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~------va~~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD------VAARGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS------TTTCSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec------hhhcCccccce
Confidence 349999999999888877777653 7888999998776655433 245678999992 23356778888
Q ss_pred eEEEeccc
Q 015098 184 KMFVLDEA 191 (413)
Q Consensus 184 ~~iV~DE~ 191 (413)
++||.=+.
T Consensus 98 ~~VI~~d~ 105 (300)
T 3i32_A 98 DLVVHYRM 105 (300)
T ss_dssp SEEEESSC
T ss_pred eEEEEcCC
Confidence 88875343
No 230
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=86.40 E-value=0.48 Score=37.53 Aligned_cols=58 Identities=10% Similarity=0.054 Sum_probs=40.8
Q ss_pred cHHHHhhhhhhhc--CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHH
Q 015098 64 SAIQQRGIVPFCK--GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQ 123 (413)
Q Consensus 64 ~~~Q~~~~~~i~~--~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q 123 (413)
.+-|..++..++. ..-.++.++-|++||...+..++.... ..+.++.+++|+..-...
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~--~~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAR--EQGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHH--HTTCCEEEECSTTHHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHH--hcCeEEEEEcCchHHHHH
Confidence 3568889988865 345688999999999885444443322 233499999999775544
No 231
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=86.36 E-value=3.8 Score=36.84 Aligned_cols=76 Identities=14% Similarity=0.237 Sum_probs=56.6
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHH----HcCCcEEEEccHHHHHHHHcCCCCCCc
Q 015098 107 VQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDY 182 (413)
Q Consensus 107 ~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iii~T~~~l~~~~~~~~~~~~~ 182 (413)
...++||.|+++.-+..+++.+++. +..+..++|+.......... ....+|+|+|. ....++++.+
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~ 311 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPT 311 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCccc
Confidence 3458999999999999888888775 67788889887765544332 34678999993 3346788888
Q ss_pred ceEEEeccch
Q 015098 183 IKMFVLDEAD 192 (413)
Q Consensus 183 ~~~iV~DE~h 192 (413)
+++||.-+..
T Consensus 312 ~~~Vi~~~~p 321 (395)
T 3pey_A 312 VSMVVNYDLP 321 (395)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEcCCC
Confidence 9998875554
No 232
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=86.35 E-value=0.24 Score=39.87 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=17.6
Q ss_pred hhcCCcEEEeCCCCCcchHHh
Q 015098 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~ 94 (413)
+..|..+++.||+|||||..+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 445778999999999999764
No 233
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=86.35 E-value=0.5 Score=42.29 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=28.0
Q ss_pred hcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCc
Q 015098 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 117 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~ 117 (413)
..|.-+++.+|+|+|||..++..+...... +.+++|+.--
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E 98 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAE 98 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECC
Confidence 356779999999999998766555444333 2377777654
No 234
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=86.21 E-value=6.8 Score=31.40 Aligned_cols=96 Identities=19% Similarity=0.176 Sum_probs=60.1
Q ss_pred EEEEeccccchHHH-HHHHHHhh----cccceEEEEccHHHHHHHHHHhhhC-----CCeeEEecCCCCHHHHHHHHHHH
Q 015098 256 FYVNVEKEEWKLET-LCDLYETL----AITQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREF 325 (413)
Q Consensus 256 ~~~~~~~~~~~~~~-l~~~~~~~----~~~~~lif~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f 325 (413)
.....++..+|... +..++... .+.+++|.+++++.+..+.+.+... +..+..++|+.+..+.... +
T Consensus 43 ~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~ 119 (206)
T 1vec_A 43 ILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L 119 (206)
T ss_dssp EEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T
T ss_pred EEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c
Confidence 34445555555533 22333322 3457999999999888887777543 5678888888776543222 2
Q ss_pred hcCCCcEEEEcCC-----CC-CCCCCCCCcEEEEcc
Q 015098 326 RSGSSRVLITTDL-----LA-RGIDVQQVSLVINYD 355 (413)
Q Consensus 326 ~~~~~~vli~t~~-----~~-~G~d~~~~~~vi~~~ 355 (413)
.+..+|+|+|+- +. ..+++.+++++|...
T Consensus 120 -~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 154 (206)
T 1vec_A 120 -DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDE 154 (206)
T ss_dssp -TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEET
T ss_pred -CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEC
Confidence 356789999971 22 234567788887654
No 235
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=86.15 E-value=0.45 Score=37.83 Aligned_cols=21 Identities=19% Similarity=0.127 Sum_probs=17.6
Q ss_pred hcCCcEEEeCCCCCcchHHhH
Q 015098 75 CKGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~~ 95 (413)
..+..+++.|++|+|||.++-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 356789999999999998763
No 236
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=85.99 E-value=1.2 Score=50.61 Aligned_cols=48 Identities=23% Similarity=0.115 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHh----hhhhhhcCCcEEEeCCCCCcchHHhH
Q 015098 47 LQENLLRGIYAYGFEKPSAIQQR----GIVPFCKGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~----~~~~i~~~~~~li~~~tGsGKT~~~~ 95 (413)
+.+.+.+.+.+.|+ .+.+.+.. .++.+...+.++++||||+|||.++-
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 34456666677777 45665532 33334457889999999999998764
No 237
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=85.91 E-value=0.43 Score=40.56 Aligned_cols=19 Identities=21% Similarity=0.136 Sum_probs=16.3
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
.+.+++.||+|+|||..+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5679999999999997753
No 238
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=85.90 E-value=0.34 Score=39.35 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=15.2
Q ss_pred cCCcEEEeCCCCCcchHHh
Q 015098 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~ 94 (413)
.|+.+.++||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678899999999999764
No 239
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=85.83 E-value=4.6 Score=33.16 Aligned_cols=75 Identities=8% Similarity=0.108 Sum_probs=49.4
Q ss_pred cccceEEEEccHHHHHHHHHHhhh---CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCC------CCCCCCCCCC
Q 015098 278 AITQSVIFVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL------LARGIDVQQV 348 (413)
Q Consensus 278 ~~~~~lif~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~------~~~G~d~~~~ 348 (413)
.+.++||.+++++-+..+.+.++. .+..+..++|+.+...+... +. ...+|+|+|+- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 456899999999999988888876 36778888887665443322 22 35789999961 2335667788
Q ss_pred cEEEEccC
Q 015098 349 SLVINYDL 356 (413)
Q Consensus 349 ~~vi~~~~ 356 (413)
+++|....
T Consensus 169 ~~lViDEa 176 (228)
T 3iuy_A 169 TYLVIDEA 176 (228)
T ss_dssp CEEEECCH
T ss_pred eEEEEECH
Confidence 88886543
No 240
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=85.82 E-value=0.6 Score=43.32 Aligned_cols=51 Identities=16% Similarity=-0.013 Sum_probs=33.1
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHH
Q 015098 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVM 128 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~ 128 (413)
+..|.-+++.|++|+|||..++-.+...... +.+++|+..-- -..|+..++
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlEm-s~~ql~~R~ 244 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEM-GKKENIKRL 244 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSSS-CTTHHHHHH
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECCC-CHHHHHHHH
Confidence 3456779999999999998776666555444 33788876532 233444443
No 241
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=85.73 E-value=0.33 Score=38.19 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=14.3
Q ss_pred cEEEeCCCCCcchHHhH
Q 015098 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~ 95 (413)
.+++.|++|||||..+-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46899999999998753
No 242
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=85.70 E-value=0.36 Score=39.28 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=17.0
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
..|.-+.+.||+|||||..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45778899999999999765
No 243
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=85.68 E-value=0.38 Score=38.52 Aligned_cols=19 Identities=37% Similarity=0.690 Sum_probs=16.6
Q ss_pred cCCcEEEeCCCCCcchHHh
Q 015098 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~ 94 (413)
++..+++.|++|||||.++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677999999999999876
No 244
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=85.64 E-value=0.45 Score=42.84 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=18.0
Q ss_pred hhcCCcEEEeCCCCCcchHHh
Q 015098 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~ 94 (413)
+..|..++++||||||||...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 456899999999999999753
No 245
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=85.58 E-value=0.46 Score=41.33 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.6
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
++.+++.||+|+|||..+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 6789999999999998753
No 246
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=85.32 E-value=0.51 Score=38.64 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=16.4
Q ss_pred cCCcEEEeCCCCCcchHHh
Q 015098 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~ 94 (413)
.|.-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4677899999999999775
No 247
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=85.04 E-value=0.57 Score=41.41 Aligned_cols=54 Identities=11% Similarity=-0.034 Sum_probs=30.1
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHHH-hhhhh-hhcCCcEEEeCCCCCcchHHhH
Q 015098 39 YDSFDAMGLQENLLRGIYAYGFEKPSAIQQ-RGIVP-FCKGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~-~~~~~-i~~~~~~li~~~tGsGKT~~~~ 95 (413)
..+|++++=.+...+.|...-. .|.+. +.+.. ....+.+++.||+|+|||..+-
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHHhCHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 4567777655666665543210 01110 01111 1224789999999999998753
No 248
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=85.04 E-value=0.46 Score=41.48 Aligned_cols=19 Identities=26% Similarity=0.101 Sum_probs=15.3
Q ss_pred CcEEEeCCCCCcchHHhHH
Q 015098 78 LDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~ 96 (413)
.-++|.||||+|||..+..
T Consensus 4 ~~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHH
Confidence 3478999999999977643
No 249
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=84.97 E-value=0.27 Score=42.42 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=26.2
Q ss_pred hccCcccCCCCHHHHHHHHHCCCCCCcHHH-Hhhhhhh--hcCCcEEEeCCCCCcchHHh
Q 015098 38 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQ-QRGIVPF--CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q-~~~~~~i--~~~~~~li~~~tGsGKT~~~ 94 (413)
+..+|++.+-.+.+.+.+...-. .|+. ..++..+ .-.+.+++.||+|+|||..+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 34567777755666665543211 1111 1222222 11345999999999999765
No 250
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=84.97 E-value=0.81 Score=40.80 Aligned_cols=42 Identities=12% Similarity=-0.071 Sum_probs=27.4
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccC---CCceeEEEEcCcH
Q 015098 77 GLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAPTR 118 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~liv~P~~ 118 (413)
|.-+++.||+|+|||..++..+....... ..+.+++|+.-..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45689999999999987765555432211 1234788876644
No 251
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=84.95 E-value=0.64 Score=41.84 Aligned_cols=41 Identities=15% Similarity=0.055 Sum_probs=28.2
Q ss_pred hcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcH
Q 015098 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR 118 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~ 118 (413)
..|.-++|.+++|+|||..++..+......+ .+++|+..-.
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g---~~vlyi~~E~ 112 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAG---GTCAFIDAEH 112 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSC
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCC---CeEEEEECCC
Confidence 3467789999999999987765555443332 3777776543
No 252
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=84.90 E-value=0.4 Score=40.72 Aligned_cols=18 Identities=33% Similarity=0.324 Sum_probs=15.7
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015098 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
.+++++.||+|+|||..+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 457999999999999775
No 253
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=84.88 E-value=13 Score=30.99 Aligned_cols=73 Identities=12% Similarity=0.115 Sum_probs=50.3
Q ss_pred cceEEEEccHHHHHHHHHHhhhC----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCC-C-----CCCCCCCCCc
Q 015098 280 TQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-L-----ARGIDVQQVS 349 (413)
Q Consensus 280 ~~~lif~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~-----~~G~d~~~~~ 349 (413)
.++||.+++++-+..+.+.++.. +..+..++|+.+.......+ ....+|+|+|+- + ...+++..++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 58999999999888887777543 56777788887654433222 346789999972 1 2345677888
Q ss_pred EEEEccC
Q 015098 350 LVINYDL 356 (413)
Q Consensus 350 ~vi~~~~ 356 (413)
++|....
T Consensus 177 ~lViDEa 183 (253)
T 1wrb_A 177 YIVLDEA 183 (253)
T ss_dssp EEEEETH
T ss_pred EEEEeCH
Confidence 8886543
No 254
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=84.79 E-value=0.48 Score=42.37 Aligned_cols=41 Identities=20% Similarity=0.132 Sum_probs=27.5
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHH
Q 015098 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 119 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 119 (413)
.|.-++|.+|+|+|||..++..+...... +.+++|+..-..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E~s 100 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAEHA 100 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecccc
Confidence 45678999999999997765544433322 237888766443
No 255
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=84.74 E-value=0.76 Score=40.00 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=17.4
Q ss_pred CCcEEEeCCCCCcchHHhHHHH
Q 015098 77 GLDVIQQAQSGTGKTATFCSGI 98 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~ 98 (413)
++.+++.+++|+|||..+...+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999998764433
No 256
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=84.66 E-value=0.45 Score=37.42 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=15.6
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015098 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
+..+++.|++|||||..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467899999999999775
No 257
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=84.64 E-value=0.55 Score=40.90 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=15.3
Q ss_pred cEEEeCCCCCcchHHhHHH
Q 015098 79 DVIQQAQSGTGKTATFCSG 97 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~~~ 97 (413)
-++|+||||+|||..+...
T Consensus 12 ~i~i~GptgsGKt~la~~L 30 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIEL 30 (316)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHH
Confidence 4789999999999876433
No 258
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=84.53 E-value=3.9 Score=33.98 Aligned_cols=98 Identities=14% Similarity=0.202 Sum_probs=55.5
Q ss_pred EEEEeccccchHHH-HHHHHHhh----cccceEEEEccHHHHHHHHHHhhhC----CCeeEEecCCCCHHHHHHHHHHHh
Q 015098 256 FYVNVEKEEWKLET-LCDLYETL----AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFR 326 (413)
Q Consensus 256 ~~~~~~~~~~~~~~-l~~~~~~~----~~~~~lif~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~ 326 (413)
.+...++..+|.-. +..++... .+.++||.+++++.+..+.+.++.. +..+..++|+.+.. ...+.+.
T Consensus 70 ~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~ 146 (237)
T 3bor_A 70 VIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQ 146 (237)
T ss_dssp EEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC---------------
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHh
Confidence 34444555555533 33333332 3468999999999998888887653 45677777765432 2334455
Q ss_pred cCCCcEEEEcC-----CC-CCCCCCCCCcEEEEccC
Q 015098 327 SGSSRVLITTD-----LL-ARGIDVQQVSLVINYDL 356 (413)
Q Consensus 327 ~~~~~vli~t~-----~~-~~G~d~~~~~~vi~~~~ 356 (413)
.+..+|+|+|+ .+ ...+++..++++|....
T Consensus 147 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEa 182 (237)
T 3bor_A 147 AEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEA 182 (237)
T ss_dssp -CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESH
T ss_pred cCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCc
Confidence 67789999995 22 23356677888886543
No 259
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=84.48 E-value=0.53 Score=40.94 Aligned_cols=19 Identities=21% Similarity=0.050 Sum_probs=15.9
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
...+++.||+|+|||..+-
T Consensus 36 p~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp CSEEEEEECTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4678999999999998753
No 260
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=84.45 E-value=0.45 Score=38.68 Aligned_cols=20 Identities=40% Similarity=0.353 Sum_probs=16.8
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
..|.-+.+.||+|+|||..+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHH
Confidence 35777899999999999765
No 261
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=84.44 E-value=0.61 Score=41.98 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=17.0
Q ss_pred cCCcEEEeCCCCCcchHHhH
Q 015098 76 KGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~ 95 (413)
.+.++++.||+|+|||.++-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35789999999999998763
No 262
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=84.42 E-value=0.55 Score=40.98 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=16.6
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
+.++++.||+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 6789999999999997753
No 263
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=84.15 E-value=0.49 Score=42.58 Aligned_cols=20 Identities=45% Similarity=0.537 Sum_probs=16.7
Q ss_pred CCcEEEeCCCCCcchHHhHH
Q 015098 77 GLDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~ 96 (413)
++.+++.||+|+|||..+-.
T Consensus 70 ~~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 46899999999999987543
No 264
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=84.04 E-value=0.42 Score=42.44 Aligned_cols=20 Identities=35% Similarity=0.496 Sum_probs=17.3
Q ss_pred hhcCCcEEEeCCCCCcchHH
Q 015098 74 FCKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~ 93 (413)
+..|..+.+.||+|||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34589999999999999975
No 265
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=84.01 E-value=8.3 Score=35.74 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=21.0
Q ss_pred hhhhhcCCcEEEeCCCCCcchHHhHHHH
Q 015098 71 IVPFCKGLDVIQQAQSGTGKTATFCSGI 98 (413)
Q Consensus 71 ~~~i~~~~~~li~~~tGsGKT~~~~~~~ 98 (413)
+..+.+|+..++.++.|.|||..+...+
T Consensus 145 L~pi~kGq~~~i~G~sGvGKTtL~~~l~ 172 (473)
T 1sky_E 145 LAPYIKGGKIGLFGGAGVGKTVLIQELI 172 (473)
T ss_dssp HSCEETTCEEEEECCSSSCHHHHHHHHH
T ss_pred HhhhccCCEEEEECCCCCCccHHHHHHH
Confidence 3334568999999999999997754333
No 266
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=83.99 E-value=0.63 Score=40.72 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=16.7
Q ss_pred cCCcEEEeCCCCCcchHHh
Q 015098 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~ 94 (413)
.+.++++.||+|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4678999999999999775
No 267
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=83.98 E-value=0.38 Score=37.98 Aligned_cols=20 Identities=25% Similarity=0.152 Sum_probs=16.9
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
.+|.-+.+.||.|||||..+
T Consensus 7 ~~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHH
Confidence 45777899999999999765
No 268
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=83.96 E-value=1.1 Score=42.64 Aligned_cols=41 Identities=15% Similarity=0.258 Sum_probs=26.7
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCC-CceeEEEEcCc
Q 015098 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGL-VQCQALVLAPT 117 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~liv~P~ 117 (413)
.-+++|.|.||||||.+.-..++..+.... ...+++++=|.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 468999999999999876555554443332 23355555554
No 269
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=83.90 E-value=0.52 Score=42.60 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=17.3
Q ss_pred hhcCCcEEEeCCCCCcchHHh
Q 015098 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~ 94 (413)
+..|..++++||||||||...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 345778999999999999764
No 270
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=83.90 E-value=15 Score=33.75 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=64.0
Q ss_pred EEEEeccccchHHHHHHHHHh---hcccceEEEEccHHHHHHHHHHhhhC-CC---eeEEecCCCCHHHHHHHHHHHhcC
Q 015098 256 FYVNVEKEEWKLETLCDLYET---LAITQSVIFVNTRRKVDWLTDKMRSR-DH---TVSATHGDMDQNTRDIIMREFRSG 328 (413)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~~~~---~~~~~~lif~~~~~~~~~l~~~L~~~-~~---~~~~~~~~~~~~~r~~~~~~f~~~ 328 (413)
.+...++..+|.-....++.. ..++++||.+|++.-+..+.+.+.+. +. .+..++|+....++.....
T Consensus 26 ~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----- 100 (494)
T 1wp9_A 26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA----- 100 (494)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----
Confidence 344455555555443333322 35679999999999888888888765 44 7899999988776655443
Q ss_pred CCcEEEEcC-CC-----CCCCCCCCCcEEEEccC
Q 015098 329 SSRVLITTD-LL-----ARGIDVQQVSLVINYDL 356 (413)
Q Consensus 329 ~~~vli~t~-~~-----~~G~d~~~~~~vi~~~~ 356 (413)
..+|+|+|. .+ ...+....+++||....
T Consensus 101 ~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEa 134 (494)
T 1wp9_A 101 RAKVIVATPQTIENDLLAGRISLEDVSLIVFDEA 134 (494)
T ss_dssp HCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETG
T ss_pred CCCEEEecHHHHHHHHhcCCcchhhceEEEEECC
Confidence 467999996 21 12355667888886554
No 271
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=83.90 E-value=3.2 Score=37.61 Aligned_cols=72 Identities=17% Similarity=0.250 Sum_probs=54.5
Q ss_pred eeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHH----HcCCcEEEEccHHHHHHHHcCCCCCCcce
Q 015098 109 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIK 184 (413)
Q Consensus 109 ~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iii~T~~~l~~~~~~~~~~~~~~~ 184 (413)
.++||.|+++.-+..+++.+.+. +..+..++|+.......... ....+|+|+|. ....++++.+++
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~~ 336 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------VCARGIDVEQVS 336 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTSSCCCTTEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC------ccccCCCccCCC
Confidence 48999999999999988888775 67788889887766554332 34678999993 334677888899
Q ss_pred EEEecc
Q 015098 185 MFVLDE 190 (413)
Q Consensus 185 ~iV~DE 190 (413)
+||.-.
T Consensus 337 ~Vi~~~ 342 (412)
T 3fht_A 337 VVINFD 342 (412)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 888533
No 272
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=83.66 E-value=0.47 Score=37.57 Aligned_cols=16 Identities=19% Similarity=0.271 Sum_probs=14.0
Q ss_pred cEEEeCCCCCcchHHh
Q 015098 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~ 94 (413)
.+++.|++|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999875
No 273
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=83.58 E-value=0.51 Score=37.76 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=15.6
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015098 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
+..+++.|++|||||.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999875
No 274
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=83.58 E-value=0.49 Score=37.13 Aligned_cols=17 Identities=12% Similarity=-0.001 Sum_probs=14.4
Q ss_pred cEEEeCCCCCcchHHhH
Q 015098 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~ 95 (413)
.+++.|++|||||.++-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998753
No 275
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=83.55 E-value=0.83 Score=38.34 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=19.5
Q ss_pred hhhcCCcEEEeCCCCCcchHHhHHH
Q 015098 73 PFCKGLDVIQQAQSGTGKTATFCSG 97 (413)
Q Consensus 73 ~i~~~~~~li~~~tGsGKT~~~~~~ 97 (413)
-+..|.-+.+.||+|+|||..+...
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i 50 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHH
Confidence 3456888999999999999765433
No 276
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=83.52 E-value=0.59 Score=39.67 Aligned_cols=17 Identities=18% Similarity=0.051 Sum_probs=14.3
Q ss_pred cEEEeCCCCCcchHHhH
Q 015098 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~ 95 (413)
-+++.||+|||||..+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 36899999999998763
No 277
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=83.36 E-value=0.39 Score=38.33 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=16.4
Q ss_pred cCCcEEEeCCCCCcchHHhH
Q 015098 76 KGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~ 95 (413)
.|..+++.|++|||||..+-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35568999999999998763
No 278
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=83.09 E-value=0.59 Score=41.89 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=15.9
Q ss_pred cCCcEEEeCCCCCcchHHh
Q 015098 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~ 94 (413)
.+..+++.||||||||...
T Consensus 122 ~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567899999999999764
No 279
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=82.84 E-value=0.61 Score=38.50 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=16.8
Q ss_pred hhcCCcEEEeCCCCCcchHHh
Q 015098 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~ 94 (413)
+..|.-+.+.||+|+|||...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 346888999999999999764
No 280
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=82.78 E-value=0.79 Score=37.11 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=16.6
Q ss_pred cCCcEEEeCCCCCcchHHh
Q 015098 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~ 94 (413)
.|+-++++||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5778899999999999764
No 281
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=82.75 E-value=0.73 Score=42.98 Aligned_cols=19 Identities=42% Similarity=0.490 Sum_probs=16.5
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
++++++.||+|+|||..+-
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 4689999999999998764
No 282
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=82.74 E-value=0.52 Score=37.20 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.7
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015098 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
|..+++.|++|||||..+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 567899999999999765
No 283
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=82.60 E-value=4.6 Score=36.44 Aligned_cols=73 Identities=14% Similarity=0.210 Sum_probs=53.7
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHH----HcCCcEEEEccHHHHHHHHcCCCCCCcc
Q 015098 108 QCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
..++||.|+++.-+..+++.+... +..+..++|+.......... .....|+|+|. ....++++.++
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~------~~~~Gidip~~ 327 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD------LLTRGIDIQAV 327 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS------CSSSSCCCTTE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC------ccccCCCccCC
Confidence 348999999999999888888775 67788888887765544332 34678999993 23456778888
Q ss_pred eEEEecc
Q 015098 184 KMFVLDE 190 (413)
Q Consensus 184 ~~iV~DE 190 (413)
++||.-+
T Consensus 328 ~~Vi~~~ 334 (400)
T 1s2m_A 328 NVVINFD 334 (400)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 8887543
No 284
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=82.49 E-value=1.8 Score=40.04 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=47.0
Q ss_pred eeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEE
Q 015098 109 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFV 187 (413)
Q Consensus 109 ~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV 187 (413)
.+++|+||++.-+..+++.+++. +..+..++|...............+|+|+|. +...+++.. +++||
T Consensus 178 ~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~------v~e~GiDip-v~~VI 245 (440)
T 1yks_A 178 RPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD------IAEMGANLC-VERVL 245 (440)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS------STTCCTTCC-CSEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC------hhheeeccC-ceEEE
Confidence 48999999999999998888875 6788888885544444444556789999993 233566777 77776
No 285
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=82.48 E-value=0.62 Score=37.79 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=16.4
Q ss_pred cCCcEEEeCCCCCcchHHh
Q 015098 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~ 94 (413)
.|..+++.||.|||||..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678999999999999765
No 286
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=82.31 E-value=0.67 Score=37.10 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=14.4
Q ss_pred CcEEEeCCCCCcchHHh
Q 015098 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~ 94 (413)
+-+.+.||.|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999764
No 287
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=82.26 E-value=0.6 Score=36.54 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=15.8
Q ss_pred CcEEEeCCCCCcchHHhH
Q 015098 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~ 95 (413)
+++++.|++|||||.++-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 678999999999998763
No 288
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=82.08 E-value=1.7 Score=37.26 Aligned_cols=28 Identities=14% Similarity=0.020 Sum_probs=21.7
Q ss_pred hhhhcCCcEEEeCCCCCcchHHhHHHHH
Q 015098 72 VPFCKGLDVIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 72 ~~i~~~~~~li~~~tGsGKT~~~~~~~~ 99 (413)
.-+..|.-+++.||+|+|||..+...+.
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3456788999999999999977654443
No 289
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=82.06 E-value=1.1 Score=39.03 Aligned_cols=41 Identities=17% Similarity=0.032 Sum_probs=26.0
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcC
Q 015098 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 116 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P 116 (413)
+..|.-+++.||+|+|||..+...+...... .+.+++++..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~ 72 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAML 72 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeC
Confidence 4567889999999999997754433332222 1226666643
No 290
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=81.89 E-value=0.82 Score=40.20 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=15.6
Q ss_pred cEEEeCCCCCcchHHhHHH
Q 015098 79 DVIQQAQSGTGKTATFCSG 97 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~~~ 97 (413)
.+++.||||+|||..+...
T Consensus 7 ~i~i~GptGsGKTtla~~L 25 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMAL 25 (323)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999876433
No 291
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=81.87 E-value=0.88 Score=41.13 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=16.4
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
..++++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 5689999999999998753
No 292
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=81.68 E-value=1 Score=39.28 Aligned_cols=18 Identities=22% Similarity=0.171 Sum_probs=15.5
Q ss_pred CcEEEeCCCCCcchHHhH
Q 015098 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~ 95 (413)
..+++.||+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 468999999999998763
No 293
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=81.68 E-value=1.2 Score=39.02 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=16.3
Q ss_pred CCcEEEeCCCCCcchHHhHHH
Q 015098 77 GLDVIQQAQSGTGKTATFCSG 97 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~ 97 (413)
++-+++.+++|+|||..+...
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~L 124 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKL 124 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHH
Confidence 456789999999999765433
No 294
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=81.68 E-value=0.64 Score=37.37 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=17.4
Q ss_pred hcCCcEEEeCCCCCcchHHhH
Q 015098 75 CKGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~~ 95 (413)
..+..+++.|++|||||.++-
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 356778999999999998763
No 295
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=81.66 E-value=0.64 Score=37.68 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=16.8
Q ss_pred cCCcEEEeCCCCCcchHHhH
Q 015098 76 KGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~ 95 (413)
.|..+++.|++|||||..+-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 46678999999999998753
No 296
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=81.47 E-value=0.93 Score=40.67 Aligned_cols=19 Identities=26% Similarity=0.184 Sum_probs=16.6
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
.+.+++.||+|+|||..+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999998763
No 297
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=81.41 E-value=0.53 Score=37.76 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=15.8
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
+..+++.|++|||||..+-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999998753
No 298
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=81.40 E-value=9 Score=37.49 Aligned_cols=77 Identities=21% Similarity=0.306 Sum_probs=58.1
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----HHcCCcEEEEccHHHHHHHHcCCCCCCcc
Q 015098 108 QCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
+.++||.|+++..+..+.+.+.+. ++.+..++|+......... .....+|+|+|. +...++++.++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~------~l~~GlDip~v 514 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLDIPEV 514 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC------CCSTTCCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc------hhhCCcccCCC
Confidence 349999999999998888888775 6778888888765554433 235688999993 23467788889
Q ss_pred eEEEeccchHH
Q 015098 184 KMFVLDEADEM 194 (413)
Q Consensus 184 ~~iV~DE~h~~ 194 (413)
++||+-+++.+
T Consensus 515 ~lVi~~d~d~~ 525 (661)
T 2d7d_A 515 SLVAILDADKE 525 (661)
T ss_dssp EEEEETTTTCC
T ss_pred CEEEEeCcccc
Confidence 99999888653
No 299
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=81.39 E-value=0.81 Score=40.90 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=18.6
Q ss_pred hhhhhhcCCc--EEEeCCCCCcchHHh
Q 015098 70 GIVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 70 ~~~~i~~~~~--~li~~~tGsGKT~~~ 94 (413)
.++.+++|.| ++.-|.||||||+++
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 3344456765 678899999999985
No 300
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=81.36 E-value=0.45 Score=40.66 Aligned_cols=19 Identities=32% Similarity=0.247 Sum_probs=16.1
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
.+.+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4678999999999998763
No 301
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=81.29 E-value=0.6 Score=38.08 Aligned_cols=25 Identities=16% Similarity=-0.000 Sum_probs=20.1
Q ss_pred hhhhhhcCCcEEEeCCCCCcchHHh
Q 015098 70 GIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 70 ~~~~i~~~~~~li~~~tGsGKT~~~ 94 (413)
.++.+..+.-+.+.|++|||||..+
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHH
Confidence 4555666778899999999999765
No 302
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=81.16 E-value=5 Score=36.40 Aligned_cols=72 Identities=17% Similarity=0.272 Sum_probs=53.8
Q ss_pred eeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----HHcCCcEEEEccHHHHHHHHcCCCCCCcce
Q 015098 109 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVGTPGRVFDMLRRQSLRPDYIK 184 (413)
Q Consensus 109 ~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~~ 184 (413)
.++||.|+++.-+..+.+.+.+. +..+..++|+......... ......|+|+|. ....++++.+++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi~~v~ 346 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD------VWARGLDVPQVS 346 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG------GGSSSCCCTTEE
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhCcCCcccCC
Confidence 38999999999998888888764 6778888988776554433 235678999993 334577888888
Q ss_pred EEEecc
Q 015098 185 MFVLDE 190 (413)
Q Consensus 185 ~iV~DE 190 (413)
+||.-+
T Consensus 347 ~Vi~~~ 352 (410)
T 2j0s_A 347 LIINYD 352 (410)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 888543
No 303
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=81.02 E-value=0.92 Score=40.17 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=15.1
Q ss_pred cEEEeCCCCCcchHHhHH
Q 015098 79 DVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~~ 96 (413)
-++|.||||||||..+..
T Consensus 9 lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHH
Confidence 578999999999987643
No 304
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=81.00 E-value=0.75 Score=38.01 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=16.8
Q ss_pred hhcCCcEEEeCCCCCcchHHh
Q 015098 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~ 94 (413)
+..|.-+.+.||.|+|||...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 456888999999999999764
No 305
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=80.98 E-value=0.88 Score=37.51 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=17.3
Q ss_pred hhcCCcEEEeCCCCCcchHHhH
Q 015098 74 FCKGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~ 95 (413)
+.+.+-+++.||+||||+..+-
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHH
Confidence 3445667899999999998763
No 306
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=80.90 E-value=7.5 Score=32.05 Aligned_cols=74 Identities=14% Similarity=0.128 Sum_probs=50.3
Q ss_pred cccceEEEEccHHHHHHHHHHhhhC----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-CC----C--CCCCCC
Q 015098 278 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LL----A--RGIDVQ 346 (413)
Q Consensus 278 ~~~~~lif~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~----~--~G~d~~ 346 (413)
.+.++||.+|+++-+..+.+.++.. +..+..++|+.+.......+ +..+|+|+|+ .+ . ..+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 4568999999999988888877654 46788888887654433322 4688999996 21 1 236667
Q ss_pred CCcEEEEccC
Q 015098 347 QVSLVINYDL 356 (413)
Q Consensus 347 ~~~~vi~~~~ 356 (413)
+++++|....
T Consensus 171 ~~~~lViDEa 180 (236)
T 2pl3_A 171 DLQMLVLDEA 180 (236)
T ss_dssp TCCEEEETTH
T ss_pred cccEEEEeCh
Confidence 7888886543
No 307
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=80.67 E-value=1 Score=40.10 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=20.0
Q ss_pred hhhhhhcCCc--EEEeCCCCCcchHHhH
Q 015098 70 GIVPFCKGLD--VIQQAQSGTGKTATFC 95 (413)
Q Consensus 70 ~~~~i~~~~~--~li~~~tGsGKT~~~~ 95 (413)
.+..+++|.+ ++.-|.||||||+++.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 4555667776 5778999999999863
No 308
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=80.65 E-value=0.79 Score=37.39 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=17.1
Q ss_pred hhhcCCcEEEeCCCCCcchHHh
Q 015098 73 PFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 73 ~i~~~~~~li~~~tGsGKT~~~ 94 (413)
.+..|.-+.+.||.|+|||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 5667888999999999999764
No 309
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=80.60 E-value=1 Score=39.71 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=17.7
Q ss_pred hhhhcCCc--EEEeCCCCCcchHHh
Q 015098 72 VPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 72 ~~i~~~~~--~li~~~tGsGKT~~~ 94 (413)
..+++|.+ ++.-|.||||||+++
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 71 KDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCeEEEEEECCCCCCCceEe
Confidence 33456765 678999999999986
No 310
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=80.48 E-value=1.1 Score=39.89 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=20.2
Q ss_pred hhhhhhcCCc--EEEeCCCCCcchHHhH
Q 015098 70 GIVPFCKGLD--VIQQAQSGTGKTATFC 95 (413)
Q Consensus 70 ~~~~i~~~~~--~li~~~tGsGKT~~~~ 95 (413)
.+..+++|.+ ++.-|.||||||+++.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 5566677876 4778999999999863
No 311
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=80.33 E-value=0.59 Score=41.68 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=16.1
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
..++++.||+|+|||..+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4579999999999997753
No 312
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=80.32 E-value=0.81 Score=37.71 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=16.0
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
+..+++.|++|||||..+-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4578999999999998763
No 313
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=80.27 E-value=1.5 Score=34.90 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=16.6
Q ss_pred cCCcEEEeCCCCCcchHHhH
Q 015098 76 KGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~ 95 (413)
.+..+++.|++|||||..+-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 46678999999999998753
No 314
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=80.24 E-value=0.94 Score=40.22 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=17.0
Q ss_pred hhhcCCc--EEEeCCCCCcchHHh
Q 015098 73 PFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 73 ~i~~~~~--~li~~~tGsGKT~~~ 94 (413)
.+++|.+ ++.-|.||||||+++
T Consensus 89 ~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 89 KLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHTCCEEEEEESSTTSSHHHHH
T ss_pred HhhCCCceEEEEecCCCCCCCeEE
Confidence 3445665 578899999999985
No 315
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=80.20 E-value=0.86 Score=36.52 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=14.4
Q ss_pred CcEEEeCCCCCcchHHh
Q 015098 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~ 94 (413)
+-++++||.|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45899999999999764
No 316
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=80.13 E-value=0.87 Score=49.25 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=54.5
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHH
Q 015098 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQ 156 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
|+-+.+.+|.|||||..++..+.+....+. .++++.+--++.... ++++ |++.
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g~---~~~~i~~e~~~~~~~---~~~~----Gv~~----------------- 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAEHALDPIY---ARKL----GVDI----------------- 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEECTTSCCCHHH---HHHT----TCCG-----------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCC---eEEEEecCCCCCHHH---HHHc----CCCH-----------------
Confidence 467999999999999998777766544443 888888765554443 3443 3321
Q ss_pred cCCcEEEEccHHH---HHHHHcCCCCCCcceEEEeccchHHhc
Q 015098 157 AGVHVVVGTPGRV---FDMLRRQSLRPDYIKMFVLDEADEMLS 196 (413)
Q Consensus 157 ~~~~iii~T~~~l---~~~~~~~~~~~~~~~~iV~DE~h~~~~ 196 (413)
.+++++-|+.- +...+. ...-..+++||+|.+-.+..
T Consensus 1484 --~~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1484 --DNLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp --GGCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCCC
T ss_pred --HHeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCCc
Confidence 13666666432 222111 01112268999999887653
No 317
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=80.07 E-value=0.71 Score=37.00 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=15.3
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015098 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
+..+++.|++|||||..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 346899999999999876
No 318
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=79.93 E-value=0.75 Score=39.84 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=15.3
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015098 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
+.-++++||+|||||..+
T Consensus 33 ~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999775
No 319
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=79.93 E-value=11 Score=26.30 Aligned_cols=51 Identities=18% Similarity=0.250 Sum_probs=37.7
Q ss_pred eEEEEccHHHHHHHHHHhhhCCCeeEEecCCCCHHHHHHHHHHHhcCCCcE
Q 015098 282 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 332 (413)
Q Consensus 282 ~lif~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 332 (413)
.++|....+....+.+.++..|..+..++++.....|.+-++.|.....++
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 356666677777788888888888888888888888877777777654443
No 320
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=79.88 E-value=0.76 Score=37.71 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=14.4
Q ss_pred cEEEeCCCCCcchHHhH
Q 015098 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~ 95 (413)
.+++.|++|||||.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998763
No 321
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=79.87 E-value=0.81 Score=36.38 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=24.4
Q ss_pred EEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015098 80 VIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 80 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~ 130 (413)
++|.|++|||||..+.-.+ .. +.+++|+......-.++.+++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la-----~~--~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI-----GD--APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH-----CS--CSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHHHHH-----hc--CCCeEEEecCCCCCHHHHHHHHH
Confidence 5899999999997654322 11 23678888755443344444433
No 322
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=79.85 E-value=1 Score=37.99 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=15.1
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015098 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
.+.+++.||+|+|||..+
T Consensus 49 ~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 345999999999999765
No 323
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=79.80 E-value=1.5 Score=38.65 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=22.2
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEc
Q 015098 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 115 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~ 115 (413)
++-+.+.++.|+|||.++...+...... +.+++++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid 140 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAA 140 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 4568889999999997754333322222 23666653
No 324
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=79.65 E-value=0.86 Score=35.94 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=14.8
Q ss_pred cEEEeCCCCCcchHHhH
Q 015098 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~ 95 (413)
.+++.+++|||||.++-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58999999999998763
No 325
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=79.59 E-value=0.79 Score=37.15 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.5
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015098 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
...+++.|++|||||..+
T Consensus 18 ~~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SSCEEEECSTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356899999999999875
No 326
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=79.59 E-value=0.77 Score=38.10 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=15.8
Q ss_pred cCCcEEEeCCCCCcchHHh
Q 015098 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~ 94 (413)
.+..+++.|++|||||..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp -CCEEEEEECTTSSHHHHH
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 3467899999999999875
No 327
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=79.56 E-value=0.78 Score=37.63 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=14.4
Q ss_pred cEEEeCCCCCcchHHhH
Q 015098 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~ 95 (413)
.+++.|++|||||.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998763
No 328
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=79.52 E-value=1.1 Score=40.92 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=19.9
Q ss_pred hhhhhhcCCc--EEEeCCCCCcchHHhH
Q 015098 70 GIVPFCKGLD--VIQQAQSGTGKTATFC 95 (413)
Q Consensus 70 ~~~~i~~~~~--~li~~~tGsGKT~~~~ 95 (413)
.+..+++|.+ ++.-|.||||||+++.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 4555667776 5778999999999863
No 329
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=79.40 E-value=0.94 Score=36.02 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=15.1
Q ss_pred CcEEEeCCCCCcchHHhH
Q 015098 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~ 95 (413)
..+++.|++|||||.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358899999999998763
No 330
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=79.32 E-value=1.1 Score=42.43 Aligned_cols=52 Identities=10% Similarity=-0.085 Sum_probs=33.3
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHH
Q 015098 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVM 128 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~ 128 (413)
+..|.-++|.|++|+|||..++-.+....... +.+++|+.--- -..|+..++
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~--g~~vl~~s~E~-s~~~l~~r~ 290 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM--GKKVGLAMLEE-SVEETAEDL 290 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS--CCCEEEEESSS-CHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhc--CCcEEEEeccC-CHHHHHHHH
Confidence 44567789999999999988766655544331 23777776532 234554444
No 331
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=79.31 E-value=1 Score=41.73 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=16.5
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
.+.+++.||+|+|||..+-
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4789999999999998753
No 332
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=79.31 E-value=1.2 Score=39.86 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=17.2
Q ss_pred hhhcCCc--EEEeCCCCCcchHHh
Q 015098 73 PFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 73 ~i~~~~~--~li~~~tGsGKT~~~ 94 (413)
.+++|.+ ++.-|.||||||+++
T Consensus 75 ~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 75 DILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCcceEEEECCCCCCcceEe
Confidence 3456765 577899999999985
No 333
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=79.26 E-value=1.2 Score=39.72 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=16.7
Q ss_pred hhcCCc--EEEeCCCCCcchHHh
Q 015098 74 FCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 74 i~~~~~--~li~~~tGsGKT~~~ 94 (413)
+++|.+ ++.-|.||||||+++
T Consensus 85 ~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 85 VLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHTTCCEEEEEECSTTSSHHHHH
T ss_pred HhCCCceeEEeecCCCCCCCEEe
Confidence 445665 578899999999985
No 334
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=79.18 E-value=1.1 Score=40.20 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=18.0
Q ss_pred hhhhhcCCc--EEEeCCCCCcchHHh
Q 015098 71 IVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 71 ~~~i~~~~~--~li~~~tGsGKT~~~ 94 (413)
+..+++|.+ ++.-|.||||||+++
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 334456765 577899999999885
No 335
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=79.11 E-value=0.66 Score=37.13 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=14.2
Q ss_pred CcEEEeCCCCCcchHHh
Q 015098 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~ 94 (413)
.-+++.||+|+|||..+
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34689999999999765
No 336
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=79.09 E-value=1.1 Score=40.77 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=17.4
Q ss_pred hhhcCCc--EEEeCCCCCcchHHhH
Q 015098 73 PFCKGLD--VIQQAQSGTGKTATFC 95 (413)
Q Consensus 73 ~i~~~~~--~li~~~tGsGKT~~~~ 95 (413)
.+++|.+ ++.-|.||||||+++.
T Consensus 149 ~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 149 TIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHhcCCceeEEeecCCCCCCCeEee
Confidence 3456765 5778999999999863
No 337
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=79.09 E-value=1.4 Score=48.44 Aligned_cols=40 Identities=18% Similarity=0.067 Sum_probs=30.2
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcH
Q 015098 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR 118 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~ 118 (413)
+++++++.+|+|+|||..+...+.+....+ .+++|+..-.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G---~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAEH 1465 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEECTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEEEccc
Confidence 478999999999999988776666555433 3788887653
No 338
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=79.08 E-value=1.2 Score=39.61 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=17.5
Q ss_pred hhhhcCCc--EEEeCCCCCcchHHh
Q 015098 72 VPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 72 ~~i~~~~~--~li~~~tGsGKT~~~ 94 (413)
+.+++|.+ ++.-|.||||||+++
T Consensus 77 ~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 77 EAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCeeEEEecccCCCceEee
Confidence 33446765 577899999999985
No 339
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=79.07 E-value=1.2 Score=39.29 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=19.3
Q ss_pred hhhhhhcCCc--EEEeCCCCCcchHHh
Q 015098 70 GIVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 70 ~~~~i~~~~~--~li~~~tGsGKT~~~ 94 (413)
.+..+++|.+ ++.-|.||||||+++
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4445567766 577999999999885
No 340
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=78.93 E-value=0.85 Score=37.63 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=16.1
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
+..+++.|++|||||..+-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578999999999998763
No 341
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=78.92 E-value=1.2 Score=39.89 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=17.2
Q ss_pred hhhcCCc--EEEeCCCCCcchHHh
Q 015098 73 PFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 73 ~i~~~~~--~li~~~tGsGKT~~~ 94 (413)
.+++|.+ ++.-|.||||||+++
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 79 DVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCceEEEeecCCCCCCceEE
Confidence 3446765 577999999999985
No 342
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=78.85 E-value=2.7 Score=34.50 Aligned_cols=96 Identities=13% Similarity=0.094 Sum_probs=56.9
Q ss_pred EEEEeccccchHHH-HHHHHHh----hcccceEEEEccHHHHHHHHHHhhh----CCCeeEEecCCCCHHHHHHHHHHHh
Q 015098 256 FYVNVEKEEWKLET-LCDLYET----LAITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFR 326 (413)
Q Consensus 256 ~~~~~~~~~~~~~~-l~~~~~~----~~~~~~lif~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~ 326 (413)
.+...++..+|.-. +..++.. ..+.++||.+++++.+..+.+.+.. .+..+..++|+.+..++... +
T Consensus 54 ~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~- 129 (224)
T 1qde_A 54 VLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---L- 129 (224)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C-
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---C-
Confidence 44555666666644 3333332 2445899999999988888777764 36778888888655443322 1
Q ss_pred cCCCcEEEEcCC------CCCCCCCCCCcEEEEccC
Q 015098 327 SGSSRVLITTDL------LARGIDVQQVSLVINYDL 356 (413)
Q Consensus 327 ~~~~~vli~t~~------~~~G~d~~~~~~vi~~~~ 356 (413)
.+.+|+|+|+- ....+++..++++|....
T Consensus 130 -~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEa 164 (224)
T 1qde_A 130 -RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEA 164 (224)
T ss_dssp -TTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred -CCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcCh
Confidence 23789999962 134566777888886543
No 343
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=78.84 E-value=7.8 Score=36.41 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=22.7
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcC
Q 015098 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 116 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P 116 (413)
..+++++++|+|||..+...+...... +.+++++..
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~---G~kVllVd~ 137 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRK---GWKTCLICA 137 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEec
Confidence 357889999999998764444332222 226666654
No 344
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=78.80 E-value=1.2 Score=39.74 Aligned_cols=21 Identities=38% Similarity=0.699 Sum_probs=16.7
Q ss_pred hhcCCc--EEEeCCCCCcchHHh
Q 015098 74 FCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 74 i~~~~~--~li~~~tGsGKT~~~ 94 (413)
+++|.+ ++.-|.||||||+++
T Consensus 101 ~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 101 FLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HTTTCCEEEEEECCTTSSHHHHH
T ss_pred HhCCCceEEEEeCCCCCCceeee
Confidence 445665 578899999999985
No 345
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=78.79 E-value=0.98 Score=36.54 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=15.8
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
+..+++.|++|||||..+-
T Consensus 20 ~~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4468999999999998753
No 346
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=78.72 E-value=0.82 Score=36.81 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=16.3
Q ss_pred cCCcEEEeCCCCCcchHHh
Q 015098 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~ 94 (413)
.+..+++.|++|||||.++
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567899999999999875
No 347
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=78.69 E-value=1.6 Score=39.43 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=21.3
Q ss_pred Hhhhhh---hhcCCcEEEeCCCCCcchHHhH
Q 015098 68 QRGIVP---FCKGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 68 ~~~~~~---i~~~~~~li~~~tGsGKT~~~~ 95 (413)
.+++.. +.+|+.+.|.+|+|+|||..+.
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 344444 3459999999999999997753
No 348
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=78.67 E-value=1.1 Score=36.22 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=16.9
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
..|..+.+.||+|+|||..+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35778899999999999775
No 349
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=78.66 E-value=0.83 Score=36.23 Aligned_cols=19 Identities=26% Similarity=0.158 Sum_probs=12.0
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
+..+++.|++|||||.++-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999998763
No 350
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=78.62 E-value=1.1 Score=40.65 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=14.7
Q ss_pred cEEEeCCCCCcchHHhHH
Q 015098 79 DVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~~ 96 (413)
-++|.||||+|||..+..
T Consensus 4 ~i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEEECSSSSHHHHHHH
T ss_pred EEEEECcchhhHHHHHHH
Confidence 468999999999977643
No 351
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=78.62 E-value=1.1 Score=40.15 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=17.1
Q ss_pred hhhcCCc--EEEeCCCCCcchHHh
Q 015098 73 PFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 73 ~i~~~~~--~li~~~tGsGKT~~~ 94 (413)
.+++|.+ ++.-|.||||||+++
T Consensus 96 ~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 96 SVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHhCCCeeeEEeecCCCCCCCEeE
Confidence 3456765 577899999999985
No 352
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=78.56 E-value=0.98 Score=35.39 Aligned_cols=18 Identities=17% Similarity=0.098 Sum_probs=15.1
Q ss_pred CcEEEeCCCCCcchHHhH
Q 015098 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~ 95 (413)
..+++.|++|||||.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 357899999999998763
No 353
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=78.52 E-value=0.87 Score=37.07 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=16.4
Q ss_pred cCCcEEEeCCCCCcchHHhH
Q 015098 76 KGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~ 95 (413)
++..+++.|++|||||..+-
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 35568999999999998763
No 354
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=78.51 E-value=0.9 Score=37.79 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=13.6
Q ss_pred hhcCCcEEEeCCCCCcchHHh
Q 015098 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~ 94 (413)
+..|.-+.+.||+|+|||...
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EECCCEEEEECSCC----CHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 445788899999999999764
No 355
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=78.48 E-value=1.1 Score=40.07 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=18.7
Q ss_pred hhhhhhcCCc--EEEeCCCCCcchHHh
Q 015098 70 GIVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 70 ~~~~i~~~~~--~li~~~tGsGKT~~~ 94 (413)
.++.+++|.+ ++.-|.||||||+++
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3444556766 577899999999985
No 356
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=79.86 E-value=0.42 Score=37.66 Aligned_cols=73 Identities=14% Similarity=0.207 Sum_probs=47.7
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHH----HcCCcEEEEccHHHHHHHHcCCCCCCcc
Q 015098 108 QCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
+.++||.|+++..+..+.+.+... +..+..++|+.......... ....+|+|+|. .+ ..++++.++
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VA-ARGIDIPDV 99 (170)
Confidence 448999999999888888777664 66777778776544433222 34567999982 22 234556666
Q ss_pred eEEEecc
Q 015098 184 KMFVLDE 190 (413)
Q Consensus 184 ~~iV~DE 190 (413)
++||.-+
T Consensus 100 ~~Vi~~~ 106 (170)
T 2yjt_D 100 SHVFNFD 106 (170)
Confidence 7666533
No 357
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=78.42 E-value=0.92 Score=37.02 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=15.9
Q ss_pred cCCcEEEeCCCCCcchHHh
Q 015098 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~ 94 (413)
.|.-+.|.||+|||||..+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4667899999999999754
No 358
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=78.36 E-value=1.5 Score=37.05 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=17.2
Q ss_pred cCCcEEEeCCCCCcchHHh
Q 015098 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~ 94 (413)
.|..+++.|++|+|||.++
T Consensus 47 ~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TTCCEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4899999999999999875
No 359
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=78.33 E-value=13 Score=36.26 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=56.0
Q ss_pred eeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----HHcCCcEEEEccHHHHHHHHcCCCCCCcce
Q 015098 109 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVGTPGRVFDMLRRQSLRPDYIK 184 (413)
Q Consensus 109 ~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~~ 184 (413)
.++||.|+++..+..+.+.+.+. ++.+..++|+......... .....+|+|+|. . ...++++..++
T Consensus 440 ~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~-l~~GlDip~v~ 509 (664)
T 1c4o_A 440 ERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----L-LREGLDIPEVS 509 (664)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----C-CCTTCCCTTEE
T ss_pred CEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----h-hhcCccCCCCC
Confidence 49999999999999888888775 6777888888765554433 234678999982 2 24577888899
Q ss_pred EEEeccchH
Q 015098 185 MFVLDEADE 193 (413)
Q Consensus 185 ~iV~DE~h~ 193 (413)
+||+=+++.
T Consensus 510 lVI~~d~d~ 518 (664)
T 1c4o_A 510 LVAILDADK 518 (664)
T ss_dssp EEEETTTTS
T ss_pred EEEEeCCcc
Confidence 888877754
No 360
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=78.33 E-value=1.6 Score=40.29 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=23.5
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcC
Q 015098 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 116 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P 116 (413)
..+++++++|+|||..+...+...... +.+++++..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~---G~kVllv~~ 135 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR---GLKPALIAA 135 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH---HCCEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEec
Confidence 468899999999998765444433222 226666653
No 361
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=78.32 E-value=1.5 Score=39.14 Aligned_cols=40 Identities=13% Similarity=-0.042 Sum_probs=24.4
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHcccc---CCCceeEEEEcC
Q 015098 77 GLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAP 116 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~---~~~~~~~liv~P 116 (413)
|.-+.+.||+|+|||..+...+...... +..+.+++++.-
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 4568999999999997765444332111 111247677754
No 362
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=78.20 E-value=3.5 Score=33.66 Aligned_cols=95 Identities=16% Similarity=0.157 Sum_probs=57.9
Q ss_pred EEEeccccchHHH-HHHHHHhh----cccceEEEEccHHHHHHHHHHhhhC--------CCeeEEecCCCCHHHHHHHHH
Q 015098 257 YVNVEKEEWKLET-LCDLYETL----AITQSVIFVNTRRKVDWLTDKMRSR--------DHTVSATHGDMDQNTRDIIMR 323 (413)
Q Consensus 257 ~~~~~~~~~~~~~-l~~~~~~~----~~~~~lif~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~ 323 (413)
....++..+|... +..++... .+.+++|.+++++-+..+.+.++.. +..+..++|+.+..... +
T Consensus 45 lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~ 121 (219)
T 1q0u_A 45 VGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---E 121 (219)
T ss_dssp EEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---C
T ss_pred EEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---H
Confidence 4445555555543 33333332 3458999999999888887776543 56777888876433221 1
Q ss_pred HHhcCCCcEEEEcCC-----C-CCCCCCCCCcEEEEcc
Q 015098 324 EFRSGSSRVLITTDL-----L-ARGIDVQQVSLVINYD 355 (413)
Q Consensus 324 ~f~~~~~~vli~t~~-----~-~~G~d~~~~~~vi~~~ 355 (413)
.+ .+..+|+|+|+- + ...+++..++++|...
T Consensus 122 ~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDE 158 (219)
T 1q0u_A 122 KL-NVQPHIVIGTPGRINDFIREQALDVHTAHILVVDE 158 (219)
T ss_dssp CC-SSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECS
T ss_pred Hc-CCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcC
Confidence 11 246789999961 1 2245667788887654
No 363
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=78.13 E-value=1.2 Score=40.12 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=21.6
Q ss_pred cHHHHhhhhh--------hhcCCc--EEEeCCCCCcchHHh
Q 015098 64 SAIQQRGIVP--------FCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 64 ~~~Q~~~~~~--------i~~~~~--~li~~~tGsGKT~~~ 94 (413)
..-|.+.+.. +++|.+ ++.-|.||||||+++
T Consensus 76 ~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 76 RSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 3446655543 445665 577899999999885
No 364
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=78.13 E-value=1.1 Score=36.58 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=20.8
Q ss_pred HHHHhhhhhhhcCCcEEEeCCCCCcchHHh
Q 015098 65 AIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 65 ~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~ 94 (413)
+.++... .+..|..+++.|++|+|||..+
T Consensus 14 ~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 14 RSERTEL-RNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp HHHHHHH-HTSSCEEEEEECSTTSSHHHHH
T ss_pred HHHhhcc-cCCCCCEEEEECCCCCCHHHHH
Confidence 3444442 3455778899999999999775
No 365
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=78.01 E-value=1.2 Score=39.62 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=17.6
Q ss_pred hhhhcCCc--EEEeCCCCCcchHHh
Q 015098 72 VPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 72 ~~i~~~~~--~li~~~tGsGKT~~~ 94 (413)
..+++|.+ ++.-|.||||||+++
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 71 DSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHcCCccceeeecCCCCCCCeEE
Confidence 33456765 577899999999885
No 366
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=77.99 E-value=0.94 Score=35.84 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=15.9
Q ss_pred cCCcEEEeCCCCCcchHHh
Q 015098 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~ 94 (413)
+|..+++.|+.|||||.++
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567889999999999765
No 367
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=77.98 E-value=0.85 Score=36.46 Aligned_cols=17 Identities=24% Similarity=0.304 Sum_probs=14.3
Q ss_pred cEEEeCCCCCcchHHhH
Q 015098 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~ 95 (413)
.+++.|++|||||..+-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998753
No 368
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=77.90 E-value=8.4 Score=35.37 Aligned_cols=69 Identities=14% Similarity=0.216 Sum_probs=53.0
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHH----HcCCcEEEEccHHHHHHHHcCCCCCCcceE
Q 015098 110 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKM 185 (413)
Q Consensus 110 ~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iii~T~~~l~~~~~~~~~~~~~~~~ 185 (413)
++||.|+++.-+..+.+.+.+. +..+..++|+....+....+ .....|+|+|. +...++++.++++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~~ 371 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIKH 371 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCCE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCCE
Confidence 5999999999999888888764 67888999988766554432 34678999993 3345778888888
Q ss_pred EEe
Q 015098 186 FVL 188 (413)
Q Consensus 186 iV~ 188 (413)
||.
T Consensus 372 VI~ 374 (434)
T 2db3_A 372 VIN 374 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 369
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=77.87 E-value=1.2 Score=39.41 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=15.2
Q ss_pred CcEEEeCCCCCcchHHh
Q 015098 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~ 94 (413)
.++++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 67999999999999765
No 370
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=77.85 E-value=1.1 Score=40.20 Aligned_cols=22 Identities=41% Similarity=0.601 Sum_probs=17.1
Q ss_pred hhhcCCc--EEEeCCCCCcchHHh
Q 015098 73 PFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 73 ~i~~~~~--~li~~~tGsGKT~~~ 94 (413)
.+++|.+ ++.-|.||||||+++
T Consensus 95 ~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 95 EVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCceEEEEeecCCCCCcceec
Confidence 3445665 678899999999985
No 371
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=77.84 E-value=1.4 Score=36.03 Aligned_cols=17 Identities=18% Similarity=0.179 Sum_probs=14.1
Q ss_pred cEEEeCCCCCcchHHhH
Q 015098 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~ 95 (413)
.+++.||+||||+..+-
T Consensus 2 ~Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36889999999998763
No 372
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=77.84 E-value=1 Score=40.46 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=18.9
Q ss_pred hhhhhhcCCc--EEEeCCCCCcchHHh
Q 015098 70 GIVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 70 ~~~~i~~~~~--~li~~~tGsGKT~~~ 94 (413)
.+..+++|.+ ++.-|.||||||+++
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4445567776 577899999999985
No 373
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=77.81 E-value=1.2 Score=39.88 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=18.2
Q ss_pred hhhhhcCCc--EEEeCCCCCcchHHh
Q 015098 71 IVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 71 ~~~i~~~~~--~li~~~tGsGKT~~~ 94 (413)
+..+++|.+ ++.-|.||||||+++
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEE
Confidence 334456765 577899999999985
No 374
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=77.73 E-value=1.4 Score=38.51 Aligned_cols=21 Identities=19% Similarity=0.040 Sum_probs=17.5
Q ss_pred hhcCCcEEEeCCCCCcchHHh
Q 015098 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~ 94 (413)
+..|..+.|+||+|+|||...
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHH
Confidence 345889999999999999654
No 375
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=77.73 E-value=1.3 Score=39.88 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=17.6
Q ss_pred hhhcCCc--EEEeCCCCCcchHHhH
Q 015098 73 PFCKGLD--VIQQAQSGTGKTATFC 95 (413)
Q Consensus 73 ~i~~~~~--~li~~~tGsGKT~~~~ 95 (413)
.+++|.+ ++.-|.||||||+++.
T Consensus 129 ~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 129 TIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHhcCCceEEEEecCCCCCCCeEec
Confidence 3456765 5778999999999863
No 376
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=77.70 E-value=1.3 Score=39.67 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=18.4
Q ss_pred hhhhhhcCCc--EEEeCCCCCcchHHh
Q 015098 70 GIVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 70 ~~~~i~~~~~--~li~~~tGsGKT~~~ 94 (413)
.++.+++|.+ ++.-|.||||||+++
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 3444456766 577899999999985
No 377
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=77.67 E-value=2.2 Score=37.21 Aligned_cols=19 Identities=42% Similarity=0.541 Sum_probs=15.8
Q ss_pred cCCcEEEeCCCCCcchHHh
Q 015098 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~ 94 (413)
.|.-+.+.||+|+|||...
T Consensus 101 ~g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSSEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 3567889999999999764
No 378
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=77.51 E-value=5.3 Score=41.56 Aligned_cols=96 Identities=15% Similarity=0.184 Sum_probs=64.5
Q ss_pred EEeccccchHHHHHHHHHh--hcccceEEEEccHHHHHHHHHHhhh----CCC----eeEEecCCCCHHHHHHHHHHHhc
Q 015098 258 VNVEKEEWKLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRS----RDH----TVSATHGDMDQNTRDIIMREFRS 327 (413)
Q Consensus 258 ~~~~~~~~~~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~L~~----~~~----~~~~~~~~~~~~~r~~~~~~f~~ 327 (413)
...++..+|......++.. ..+.++||.+|+++-+..+.+.++. .+. .+..++|+.+...+....+.+.+
T Consensus 76 v~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~ 155 (1054)
T 1gku_B 76 ATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN 155 (1054)
T ss_dssp CCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG
T ss_pred EEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC
Confidence 3344545554333333322 2456899999999998888777764 355 78899999998888777777776
Q ss_pred CCCcEEEEcC-CCCCCC-CCCCCcEEEEcc
Q 015098 328 GSSRVLITTD-LLARGI-DVQQVSLVINYD 355 (413)
Q Consensus 328 ~~~~vli~t~-~~~~G~-d~~~~~~vi~~~ 355 (413)
.+|+|+|+ .+..-+ ++..++++|...
T Consensus 156 --~~IlV~TP~~L~~~l~~L~~l~~lViDE 183 (1054)
T 1gku_B 156 --FKIVITTTQFLSKHYRELGHFDFIFVDD 183 (1054)
T ss_dssp --CSEEEEEHHHHHHCSTTSCCCSEEEESC
T ss_pred --CCEEEEcHHHHHHHHHHhccCCEEEEeC
Confidence 89999997 211111 155788887654
No 379
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=77.45 E-value=1.7 Score=43.31 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=33.3
Q ss_pred hccCcccCCCCHHHHHHHHHCC-CCCCcHHHHhhhhhhhcCCcEEEeCCCCCcchHHh
Q 015098 38 VYDSFDAMGLQENLLRGIYAYG-FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~-~~~~~~~Q~~~~~~i~~~~~~li~~~tGsGKT~~~ 94 (413)
+..+|++.+--+...+.|...- ++..+|.+..-+ -+...+.+++.||+|+|||+.+
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHH
Confidence 4457888877777777776532 111111111100 1123578999999999999765
No 380
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=77.41 E-value=1.3 Score=40.45 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=19.1
Q ss_pred hhhhhhcCCc--EEEeCCCCCcchHHh
Q 015098 70 GIVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 70 ~~~~i~~~~~--~li~~~tGsGKT~~~ 94 (413)
.+..+++|.+ ++.-|.||||||+++
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4455567766 577899999999985
No 381
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=77.38 E-value=3.6 Score=37.89 Aligned_cols=67 Identities=12% Similarity=0.025 Sum_probs=48.2
Q ss_pred eeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEE
Q 015098 109 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMF 186 (413)
Q Consensus 109 ~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~i 186 (413)
++++|+||++.-++.+++.+++. +..+..++|+..............+|+|+|. .+ ..+++.. +..|
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~-----v~-e~GiDip-~~~V 238 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD-----IS-EMGANFK-ADRV 238 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG-----GG-GTSCCCC-CSEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc-----hH-HcCcccC-CcEE
Confidence 48999999999999988888875 6788888887544433444556789999993 33 3455665 4444
No 382
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=77.35 E-value=1 Score=36.73 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=16.9
Q ss_pred cCCcEEEeCCCCCcchHHhH
Q 015098 76 KGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~ 95 (413)
.+..+++.|++|||||.++-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 46778999999999998763
No 383
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=77.12 E-value=1.1 Score=37.63 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=16.6
Q ss_pred cCCcEEEeCCCCCcchHHhH
Q 015098 76 KGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~ 95 (413)
.+..+++.||+|||||.++-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678999999999998763
No 384
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=77.06 E-value=1.2 Score=39.08 Aligned_cols=25 Identities=20% Similarity=0.027 Sum_probs=19.0
Q ss_pred hcCCcEEEeCCCCCcchHHhHHHHH
Q 015098 75 CKGLDVIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~~~~~~ 99 (413)
..+..+++.||+|+|||..++..+.
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3456679999999999987655443
No 385
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=77.05 E-value=1.9 Score=37.61 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=16.0
Q ss_pred cCCcEEEeCCCCCcchHHh
Q 015098 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~ 94 (413)
.|.-+.+.||+|+|||...
T Consensus 99 ~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp SCEEEEEECCTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4667889999999999764
No 386
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=77.04 E-value=1.4 Score=40.67 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=16.8
Q ss_pred hhcCCc--EEEeCCCCCcchHHh
Q 015098 74 FCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 74 i~~~~~--~li~~~tGsGKT~~~ 94 (413)
+++|.+ ++.-|.||||||+++
T Consensus 132 ~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 132 NFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHTTCCEEEEEESSTTSSHHHHH
T ss_pred hhcCCceEEEEeCCCCCCCCEEe
Confidence 456765 577899999999986
No 387
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=76.90 E-value=1.1 Score=36.63 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=16.9
Q ss_pred cCCcEEEeCCCCCcchHHhH
Q 015098 76 KGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~ 95 (413)
++..+++.|+.|||||.++-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46678999999999998763
No 388
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=76.78 E-value=1.5 Score=39.51 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=18.7
Q ss_pred hhhhhhcCCc--EEEeCCCCCcchHHh
Q 015098 70 GIVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 70 ~~~~i~~~~~--~li~~~tGsGKT~~~ 94 (413)
.+..+++|.+ ++.-|.||||||+++
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 3444556765 577899999999985
No 389
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=76.72 E-value=3 Score=35.38 Aligned_cols=52 Identities=10% Similarity=0.084 Sum_probs=33.4
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015098 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~ 131 (413)
+|..+++.+++|+|||..++..+.+.+.++. +++|+.-. +-..++.+.++.+
T Consensus 20 ~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge---~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKDILFYILSRKLKSDN---LVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp TCEEEEEECSGGGCHHHHHHHHHHHHHHTTC---EEEEEECS-SCHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCccHHHHHHHHHHHHHHCCC---cEEEEEEe-CCHHHHHHHHHHc
Confidence 4567788888888888555555555555544 77776653 3355566666655
No 390
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=76.63 E-value=1.1 Score=37.10 Aligned_cols=24 Identities=17% Similarity=-0.038 Sum_probs=18.8
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHH
Q 015098 74 FCKGLDVIQQAQSGTGKTATFCSG 97 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~ 97 (413)
+..|.-+.+.+|+|+|||..+...
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l 45 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTL 45 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHH
Confidence 345778999999999999775443
No 391
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=76.58 E-value=0.99 Score=36.04 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=14.7
Q ss_pred CcEEEeCCCCCcchHHh
Q 015098 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~ 94 (413)
..+++.|++|||||.++
T Consensus 7 ~~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35789999999999875
No 392
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=76.55 E-value=1.9 Score=40.21 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=16.5
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
..++++.||+|+|||..+-
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 5689999999999998764
No 393
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=76.47 E-value=1.5 Score=37.68 Aligned_cols=54 Identities=13% Similarity=-0.029 Sum_probs=30.1
Q ss_pred hccCcccCCCCHHHHHHHHHCCCCCCcHHHHhhhhhhh--cCCcEEEeCCCCCcchHHh
Q 015098 38 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFC--KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~i~--~~~~~li~~~tGsGKT~~~ 94 (413)
+..+|+++.-.+.....+...-.. . -....+..+- -.+.+++.||+|+|||..+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 455677776666666655432110 0 0011222211 1345999999999999765
No 394
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=76.46 E-value=1.6 Score=36.36 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=16.6
Q ss_pred cCCcEEEeCCCCCcchHHhH
Q 015098 76 KGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~ 95 (413)
.+..+++.|++|||||..+-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34678999999999998764
No 395
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=76.45 E-value=1.1 Score=34.84 Aligned_cols=16 Identities=13% Similarity=0.030 Sum_probs=14.0
Q ss_pred cEEEeCCCCCcchHHh
Q 015098 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~ 94 (413)
.+++.|++|||||.++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999875
No 396
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=76.23 E-value=1.2 Score=36.63 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.8
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
+..+++.|++|||||..+-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999998763
No 397
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=76.17 E-value=1.1 Score=36.16 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=14.7
Q ss_pred CcEEEeCCCCCcchHHh
Q 015098 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~ 94 (413)
..+++.|++|||||.++
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45799999999999875
No 398
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=76.05 E-value=1.2 Score=36.71 Aligned_cols=17 Identities=24% Similarity=0.261 Sum_probs=14.8
Q ss_pred CcEEEeCCCCCcchHHh
Q 015098 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~ 94 (413)
..+.+.||+|||||..+
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999875
No 399
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=76.01 E-value=11 Score=31.82 Aligned_cols=74 Identities=14% Similarity=0.184 Sum_probs=51.8
Q ss_pred cccceEEEEccHHHHHHHHHHhhh----CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC------C-CCCCCCCC
Q 015098 278 AITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD------L-LARGIDVQ 346 (413)
Q Consensus 278 ~~~~~lif~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~------~-~~~G~d~~ 346 (413)
.+.++||.+|+++-+....+.++. .+..+..+.|+........ .+..+ .+|+|+|+ . ...++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 356899999999998888777765 3567778888876554433 23333 88999995 1 12356777
Q ss_pred CCcEEEEcc
Q 015098 347 QVSLVINYD 355 (413)
Q Consensus 347 ~~~~vi~~~ 355 (413)
+++++|...
T Consensus 201 ~l~~lViDE 209 (262)
T 3ly5_A 201 NLQCLVIDE 209 (262)
T ss_dssp TCCEEEECS
T ss_pred cCCEEEEcC
Confidence 888888654
No 400
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=75.97 E-value=0.95 Score=38.32 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.6
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015098 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
+..+++.|++|||||..+
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999875
No 401
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=75.94 E-value=1 Score=36.87 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=14.4
Q ss_pred cEEEeCCCCCcchHHhH
Q 015098 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~ 95 (413)
.+++.|++|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998763
No 402
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=75.87 E-value=6.4 Score=34.83 Aligned_cols=73 Identities=15% Similarity=0.327 Sum_probs=52.2
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----HHcCCcEEEEccHHHHHHHHcCCCCCCcc
Q 015098 108 QCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
+.++||.|+++.-+..+.+.+.+. +..+..++|+......... .....+|+|+|. .+. .++++.++
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~~~ 307 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMS-RGIDVNDL 307 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THH-HHCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh-cCCCcccC
Confidence 448999999999999888888775 6778888888776554433 234678999993 222 34567777
Q ss_pred eEEEecc
Q 015098 184 KMFVLDE 190 (413)
Q Consensus 184 ~~iV~DE 190 (413)
++||.-+
T Consensus 308 ~~Vi~~~ 314 (367)
T 1hv8_A 308 NCVINYH 314 (367)
T ss_dssp SEEEESS
T ss_pred CEEEEec
Confidence 8887544
No 403
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=75.77 E-value=3.9 Score=40.13 Aligned_cols=69 Identities=9% Similarity=0.102 Sum_probs=48.1
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEE
Q 015098 108 QCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFV 187 (413)
Q Consensus 108 ~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV 187 (413)
+.++||.||++.-++.+++.+++. +..+..++|...............+|+|+|. . ...+++.. +++||
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTd-----v-~e~GIDip-v~~VI 478 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITTD-----I-SEMGANFG-ASRVI 478 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEECG-----G-GGTTCCCC-CSEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEECc-----h-hhcceeeC-CcEEE
Confidence 348999999999998888887764 6788889985332222233345678999992 3 33456676 67665
No 404
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=75.72 E-value=1.1 Score=37.99 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=15.6
Q ss_pred CCcEEEeCCCCCcchHHhH
Q 015098 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~ 95 (413)
+..++++|++|||||..+-
T Consensus 4 ~~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 3458999999999998753
No 405
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=75.63 E-value=1.2 Score=35.96 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=14.2
Q ss_pred cEEEeCCCCCcchHHhH
Q 015098 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~ 95 (413)
.+++.|++|||||..+-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 46899999999998753
No 406
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=75.55 E-value=1.2 Score=41.50 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=15.7
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015098 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
.+.+++.||+|+|||..+
T Consensus 49 p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999875
No 407
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=75.43 E-value=23 Score=31.45 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=15.9
Q ss_pred CcEEEeCCCCCcchHHhHHH
Q 015098 78 LDVIQQAQSGTGKTATFCSG 97 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~ 97 (413)
..+.++|++|+|||..+...
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L 99 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEAL 99 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999775433
No 408
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=75.39 E-value=3.7 Score=35.66 Aligned_cols=94 Identities=9% Similarity=0.036 Sum_probs=58.3
Q ss_pred EEEEeccccchHHH-HHHHHHhh----cccceEEEEccHHHHHHHHHHhhhC-----CCeeEEecCCCCHHHHHHHHHHH
Q 015098 256 FYVNVEKEEWKLET-LCDLYETL----AITQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREF 325 (413)
Q Consensus 256 ~~~~~~~~~~~~~~-l~~~~~~~----~~~~~lif~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f 325 (413)
.+...++..+|... +..++... ...++||.+|+++-+..+++.++.. +..+....|+......
T Consensus 134 ~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------- 206 (300)
T 3fmo_B 134 LIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG------- 206 (300)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------
T ss_pred EEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------
Confidence 34444555555433 33444332 3347999999999999887777653 4566667666543221
Q ss_pred hcCCCcEEEEcCC-----C-C-CCCCCCCCcEEEEccC
Q 015098 326 RSGSSRVLITTDL-----L-A-RGIDVQQVSLVINYDL 356 (413)
Q Consensus 326 ~~~~~~vli~t~~-----~-~-~G~d~~~~~~vi~~~~ 356 (413)
.....+|+|+|+- + . ..+++..+.++|+...
T Consensus 207 ~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEa 244 (300)
T 3fmo_B 207 QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 244 (300)
T ss_dssp CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTH
T ss_pred hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCH
Confidence 1346789999972 1 2 3577888999887543
No 409
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=75.32 E-value=1.2 Score=35.50 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=14.1
Q ss_pred cEEEeCCCCCcchHHhH
Q 015098 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~ 95 (413)
.+++.|++|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36899999999998753
No 410
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=75.29 E-value=1.1 Score=36.53 Aligned_cols=19 Identities=21% Similarity=0.169 Sum_probs=15.6
Q ss_pred cCCcEEEeCCCCCcchHHh
Q 015098 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~ 94 (413)
.|.-+.+.||.|||||..+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 4556789999999999765
No 411
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=75.18 E-value=1.3 Score=36.03 Aligned_cols=16 Identities=31% Similarity=0.196 Sum_probs=13.8
Q ss_pred cEEEeCCCCCcchHHh
Q 015098 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~ 94 (413)
.+.+.|+.|||||.++
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999875
No 412
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=74.99 E-value=2.9 Score=32.82 Aligned_cols=16 Identities=19% Similarity=0.040 Sum_probs=13.4
Q ss_pred cEEEeCCCCCcchHHh
Q 015098 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~ 94 (413)
-+.+.++.|||||...
T Consensus 6 ~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4688999999999764
No 413
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=74.98 E-value=2.4 Score=36.79 Aligned_cols=37 Identities=16% Similarity=0.039 Sum_probs=22.4
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcC
Q 015098 77 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 116 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P 116 (413)
+.-+++.+++|+|||..+...+...... +.+++++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEec
Confidence 4567889999999997754433332222 225555543
No 414
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=74.97 E-value=1.3 Score=37.02 Aligned_cols=19 Identities=32% Similarity=0.323 Sum_probs=16.4
Q ss_pred hcCCcEEEeCCCCCcchHH
Q 015098 75 CKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~ 93 (413)
..|.-+.+.||.|+|||..
T Consensus 29 ~~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 4578899999999999965
No 415
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=74.57 E-value=1.5 Score=42.35 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=14.7
Q ss_pred cEEEeCCCCCcchHHh
Q 015098 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~ 94 (413)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999764
No 416
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=74.54 E-value=1.3 Score=35.43 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=13.8
Q ss_pred EEEeCCCCCcchHHhH
Q 015098 80 VIQQAQSGTGKTATFC 95 (413)
Q Consensus 80 ~li~~~tGsGKT~~~~ 95 (413)
+++.|+.|||||.++-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999998763
No 417
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=74.44 E-value=1.8 Score=34.27 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=13.6
Q ss_pred cEEEeCCCCCcchHHh
Q 015098 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~ 94 (413)
.+.+.||.|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4688999999999764
No 418
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=74.43 E-value=4.5 Score=37.52 Aligned_cols=68 Identities=15% Similarity=0.105 Sum_probs=47.9
Q ss_pred eeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEE
Q 015098 109 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFV 187 (413)
Q Consensus 109 ~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV 187 (413)
.++||.||++.-++++++.+.+. +..+..+++...............+|+|+|. . ...++++.. ++||
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~-----v-~~~GiDip~-~~VI 256 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----I-SEMGANFRA-GRVI 256 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEECG-----G-GGSSCCCCC-SEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEECC-----H-HHhCcCCCC-CEEE
Confidence 38999999999999888888764 6777888876553333333345779999992 3 345667776 6665
No 419
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=74.37 E-value=1.4 Score=33.73 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=13.5
Q ss_pred cEEEeCCCCCcchHHh
Q 015098 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~ 94 (413)
-.+|.||+|+|||...
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4689999999999763
No 420
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=74.34 E-value=2.5 Score=38.49 Aligned_cols=41 Identities=15% Similarity=-0.033 Sum_probs=25.7
Q ss_pred CCcEEEeCCCCCcchHHhHHHHHHcccc---CCCceeEEEEcCc
Q 015098 77 GLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPT 117 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~~~~~~~~~---~~~~~~~liv~P~ 117 (413)
|.-+.|.+|+|+|||..+...++..... +..+.+++|+.-.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 4568999999999997765433333321 1123467777643
No 421
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=74.19 E-value=1.8 Score=38.70 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=15.5
Q ss_pred CCc--EEEeCCCCCcchHHh
Q 015098 77 GLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~--~li~~~tGsGKT~~~ 94 (413)
|.+ ++.-|.||||||+++
T Consensus 83 G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 83 GCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp CCEEEEEEECCTTSSHHHHH
T ss_pred CceeEEEeeCCCCCCCCEEE
Confidence 666 588999999999986
No 422
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=74.10 E-value=1.8 Score=39.83 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=16.0
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015098 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
.+++++.||+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 478999999999999875
No 423
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=73.94 E-value=1.4 Score=36.42 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=14.3
Q ss_pred cEEEeCCCCCcchHHhH
Q 015098 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~ 95 (413)
.+++.|++|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36899999999998763
No 424
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=73.92 E-value=2.5 Score=38.93 Aligned_cols=37 Identities=19% Similarity=0.109 Sum_probs=23.2
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcC
Q 015098 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAP 116 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P 116 (413)
+.++++++.|+|||.++...+...... .+.+++++..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~--~G~kVllvd~ 137 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREK--HKKKVLVVSA 137 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT--SCCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh--cCCeEEEEec
Confidence 457888999999998865544433332 1226665543
No 425
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=73.88 E-value=1.5 Score=36.80 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.7
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015098 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
+..+++.||.|||||..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 567899999999999765
No 426
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=73.78 E-value=1.4 Score=36.79 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=17.3
Q ss_pred hhcCCcEEEeCCCCCcchHHh
Q 015098 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~ 94 (413)
+..|.-+.+.||.|+|||...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHH
Confidence 345888999999999999653
No 427
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=73.58 E-value=2.2 Score=38.42 Aligned_cols=27 Identities=33% Similarity=0.300 Sum_probs=21.3
Q ss_pred Hhhhhhh---hcCCcEEEeCCCCCcchHHh
Q 015098 68 QRGIVPF---CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 68 ~~~~~~i---~~~~~~li~~~tGsGKT~~~ 94 (413)
.+++..+ .+|+..+|.++.|+|||..+
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll 192 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTIL 192 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHH
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHH
Confidence 3455554 46999999999999999775
No 428
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=73.54 E-value=1.4 Score=35.75 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=14.0
Q ss_pred cEEEeCCCCCcchHHh
Q 015098 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~ 94 (413)
.+.+.|++|||||..+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999875
No 429
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=73.51 E-value=2.2 Score=34.19 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=14.9
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015098 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
|..+.+.+|.|+|||...
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 456789999999999754
No 430
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=73.38 E-value=2.4 Score=46.68 Aligned_cols=41 Identities=17% Similarity=0.058 Sum_probs=31.8
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCc
Q 015098 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPT 117 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~ 117 (413)
+..|.++++.+|+|+|||..+...+.+....+. +++|+.-.
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge---~~~Fit~e 1118 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAE 1118 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC---CEEEECTT
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCC---eEEEEEcc
Confidence 345789999999999999988777777665544 77887653
No 431
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=73.36 E-value=2.6 Score=37.72 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=15.7
Q ss_pred cCCcEEEeCCCCCcchHHh
Q 015098 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~ 94 (413)
.|.-+.+.||+|+|||...
T Consensus 156 ~g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCChHHHHH
Confidence 3556889999999999764
No 432
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=72.92 E-value=1.9 Score=37.62 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=17.1
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
..|..+.++||+|+|||...
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHH
T ss_pred cCCCEEEEECCCCchHHHHH
Confidence 35888999999999999764
No 433
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=72.79 E-value=2.9 Score=36.91 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=15.8
Q ss_pred cCCcEEEeCCCCCcchHHh
Q 015098 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~ 94 (413)
.|.-+.+.||+|+|||...
T Consensus 128 ~g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SSEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567899999999999764
No 434
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=72.73 E-value=1.5 Score=33.98 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=16.6
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
..|.-+.+.||.|+|||...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45777899999999999653
No 435
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=72.49 E-value=2.6 Score=45.75 Aligned_cols=43 Identities=16% Similarity=0.060 Sum_probs=31.6
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHH
Q 015098 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 119 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~ 119 (413)
+..|..+++.+|+|+|||..++..+...+..+. +++|+.-...
T Consensus 31 i~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~---~vlYI~te~~ 73 (1706)
T 3cmw_A 31 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAEHA 73 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEECTTSC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCC---ceEEEEecCc
Confidence 344788999999999999887766666554433 7888776543
No 436
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=72.47 E-value=1.9 Score=33.92 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=17.6
Q ss_pred cCCcEEEeCCCCCcchHHhHH
Q 015098 76 KGLDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~ 96 (413)
.|+.+++.++.|+|||..++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~ 35 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLA 35 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHH
Confidence 477899999999999977643
No 437
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=72.47 E-value=1.7 Score=35.76 Aligned_cols=21 Identities=33% Similarity=0.349 Sum_probs=17.4
Q ss_pred hhcCCcEEEeCCCCCcchHHh
Q 015098 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~ 94 (413)
+..|.-+.+.||.|+|||...
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 345888999999999999753
No 438
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=71.85 E-value=2.7 Score=40.72 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=18.7
Q ss_pred hhhcCCcEEEeCCCCCcchHHh
Q 015098 73 PFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 73 ~i~~~~~~li~~~tGsGKT~~~ 94 (413)
.+..|..+++.||+|+|||..+
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 3456889999999999999775
No 439
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=71.73 E-value=2.8 Score=44.78 Aligned_cols=135 Identities=13% Similarity=0.057 Sum_probs=0.0
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHH
Q 015098 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 153 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (413)
+..|+.+.++||+|||||. ++-++....... ..=|.+....+..--.+.+++......-....+.+. -..+
T Consensus 441 i~~G~~vaivG~sGsGKST--ll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~T----I~eN 511 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKST--IISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCT----IEEN 511 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHH--HHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEE----HHHH
T ss_pred ecCCcEEEEEecCCCcHHH--HHHHhccccccc---cCcccCCCccchhccHHHHhhcccccCCcceeeCCc----hhHH
Q ss_pred HHHcCCcEEEEccHHHHHHHHcCCCCC-----------------------------------CcceEEEeccchHHhccC
Q 015098 154 ILQAGVHVVVGTPGRVFDMLRRQSLRP-----------------------------------DYIKMFVLDEADEMLSRG 198 (413)
Q Consensus 154 ~~~~~~~iii~T~~~l~~~~~~~~~~~-----------------------------------~~~~~iV~DE~h~~~~~~ 198 (413)
..-...+ .|.+.+.+.++.....- .+.+++++||+=...|..
T Consensus 512 I~~g~~~---~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~ 588 (1321)
T 4f4c_A 512 ISLGKEG---ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAE 588 (1321)
T ss_dssp HHTTCTT---CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTT
T ss_pred Hhhhccc---chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHH
Q ss_pred cHHHHHHHHhhCCCCceEEEEE
Q 015098 199 FKDQIYDIFQLLPAKVQVGVFS 220 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~~S 220 (413)
....+.+.+..+..+.-+|+.|
T Consensus 589 te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 589 SEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp THHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHhCCCEEEEEc
No 440
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=71.56 E-value=27 Score=31.06 Aligned_cols=96 Identities=14% Similarity=0.116 Sum_probs=61.8
Q ss_pred EEEEeccccchHHH-HHHHHHh----hcccceEEEEccHHHHHHHHHHhhh----CCCeeEEecCCCCHHHHHHHHHHHh
Q 015098 256 FYVNVEKEEWKLET-LCDLYET----LAITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFR 326 (413)
Q Consensus 256 ~~~~~~~~~~~~~~-l~~~~~~----~~~~~~lif~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~ 326 (413)
.+...++..+|.-. +..++.. ..+.++||.+|++..+..+.+.+.. .+..+..++|+.+..+....+.
T Consensus 61 ~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--- 137 (394)
T 1fuu_A 61 VLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR--- 137 (394)
T ss_dssp EEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH---
T ss_pred EEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC---
Confidence 34445555556543 3333332 2456999999999988887777654 4678888999988766554443
Q ss_pred cCCCcEEEEcCC------CCCCCCCCCCcEEEEccC
Q 015098 327 SGSSRVLITTDL------LARGIDVQQVSLVINYDL 356 (413)
Q Consensus 327 ~~~~~vli~t~~------~~~G~d~~~~~~vi~~~~ 356 (413)
..+|+|+|.- ....++...+++||....
T Consensus 138 --~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEa 171 (394)
T 1fuu_A 138 --DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEA 171 (394)
T ss_dssp --HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred --CCCEEEECHHHHHHHHHhCCcchhhCcEEEEECh
Confidence 4679999951 123455667788876543
No 441
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=71.39 E-value=2.3 Score=42.45 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=16.0
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015098 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
.+.+++.||+|+|||+.+
T Consensus 238 p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 478999999999999875
No 442
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=71.21 E-value=1.8 Score=36.04 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=17.0
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
.+|..+.+.||.|+|||...
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45888999999999999653
No 443
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=71.18 E-value=1.8 Score=34.79 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=14.3
Q ss_pred cEEEeCCCCCcchHHhH
Q 015098 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~ 95 (413)
.+.+.|++|||||.++-
T Consensus 14 iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46889999999998763
No 444
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=71.13 E-value=11 Score=36.49 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=49.0
Q ss_pred eeEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHHHcCCcEEEEccHHHHHHHHcCCCCCCcceEEE
Q 015098 109 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFV 187 (413)
Q Consensus 109 ~~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iV 187 (413)
.++||.|+++.-+..+++.+.+. +..+..++|...............+|+|+|. .+ ..++++. ++.||
T Consensus 356 ~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd-----v~-~rGiDi~-v~~VI 423 (618)
T 2whx_A 356 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----IS-EMGANFR-AGRVI 423 (618)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG-----GG-GTTCCCC-CSEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc-----HH-HcCcccC-ceEEE
Confidence 48999999999999988888875 6778888886444433444556789999993 33 3455664 66664
No 445
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=71.10 E-value=1.8 Score=36.78 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=17.5
Q ss_pred hhcCCcEEEeCCCCCcchHHh
Q 015098 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~ 94 (413)
+..|..+.+.||.|+|||...
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHH
Confidence 345888999999999999753
No 446
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=71.08 E-value=1.8 Score=37.19 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=16.9
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
.+|.-+.+.||.|+|||...
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLF 51 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45888999999999999753
No 447
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=70.93 E-value=1.8 Score=36.47 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=17.0
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
..|.-+.+.||.|+|||...
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLT 52 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45888999999999999754
No 448
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=70.59 E-value=2.6 Score=35.57 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.4
Q ss_pred cCCcEEEeCCCCCcchHHh
Q 015098 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~ 94 (413)
.+..+.|.||+|||||.++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4677899999999999875
No 449
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=70.47 E-value=2.4 Score=40.40 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=16.7
Q ss_pred cCCcEEEeCCCCCcchHHh
Q 015098 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~ 94 (413)
.|..+++.||+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999775
No 450
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=70.39 E-value=1.7 Score=35.00 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=14.6
Q ss_pred CcEEEeCCCCCcchHHh
Q 015098 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~ 94 (413)
..+.|.+++|||||.++
T Consensus 9 ~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999876
No 451
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=70.05 E-value=3.6 Score=37.70 Aligned_cols=37 Identities=22% Similarity=0.080 Sum_probs=22.6
Q ss_pred cCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEc
Q 015098 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 115 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~ 115 (413)
.++.+.+.++.|+|||.++...+...... +.+++++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd 133 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVA 133 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEee
Confidence 34567888999999997764443332222 23565554
No 452
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=70.03 E-value=1.8 Score=49.29 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=17.9
Q ss_pred hhcCCcEEEeCCCCCcchHHh
Q 015098 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~ 94 (413)
+..+++++++||||+|||..+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 345899999999999999765
No 453
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=69.77 E-value=1.7 Score=36.43 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=17.2
Q ss_pred hhcCCcEEEeCCCCCcchHHh
Q 015098 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~ 94 (413)
+..|..+.+.||.|+|||...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIF 45 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 345788999999999999753
No 454
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=69.60 E-value=2 Score=36.69 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=16.9
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
..|.-+.+.||.|+|||...
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLL 54 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 35788999999999999753
No 455
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=69.49 E-value=1.8 Score=35.82 Aligned_cols=20 Identities=35% Similarity=0.346 Sum_probs=16.6
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
..|.-+.+.||.|+|||...
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLL 47 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35788899999999999653
No 456
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=69.47 E-value=3.4 Score=41.24 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=15.1
Q ss_pred cEEEeCCCCCcchHHhH
Q 015098 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~ 95 (413)
++++.||||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999998764
No 457
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=69.46 E-value=2 Score=35.15 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=14.6
Q ss_pred CcEEEeCCCCCcchHHh
Q 015098 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~ 94 (413)
..+.+.|+.|||||.++
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999875
No 458
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=69.40 E-value=2 Score=36.40 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=16.9
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
..|.-+.+.||.|+|||...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred eCCCEEEEECCCCCCHHHHH
Confidence 45788999999999999753
No 459
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=69.36 E-value=2.1 Score=40.16 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=15.4
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015098 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
.+.+++.||+|+|||..+
T Consensus 64 p~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CSEEEEECSSSSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356999999999999775
No 460
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=69.33 E-value=2 Score=38.67 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=13.7
Q ss_pred cEEEeCCCCCcchHHh
Q 015098 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~ 94 (413)
-.+|.||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5689999999999764
No 461
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=69.17 E-value=3.5 Score=39.10 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=27.2
Q ss_pred hhcCCcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEcCcH
Q 015098 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTR 118 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~P~~ 118 (413)
+..|.-+++.+|+|+|||......+-..... +.+++++++..
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~---G~~vi~~~~ee 319 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACAN---KERAILFAYEE 319 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTT---TCCEEEEESSS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC---CCCEEEEEEeC
Confidence 4457889999999999997654433222222 33677777643
No 462
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=68.98 E-value=2.1 Score=35.85 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=16.8
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
..|.-+.+.||.|+|||...
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35788999999999999753
No 463
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=68.74 E-value=3.6 Score=38.40 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=15.0
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015098 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
|.-+.+.|+.|+|||..+
T Consensus 293 GeVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTI 310 (503)
T ss_dssp TEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCcccHHHHH
Confidence 456889999999999764
No 464
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=68.67 E-value=6.5 Score=34.46 Aligned_cols=16 Identities=19% Similarity=0.096 Sum_probs=13.7
Q ss_pred cEEEeCCCCCcchHHh
Q 015098 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~ 94 (413)
-+.+.||+|||||..+
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999764
No 465
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=68.63 E-value=2 Score=35.99 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=15.9
Q ss_pred cCCcEEEeCCCCCcchHHh
Q 015098 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~ 94 (413)
+|.-+-+.||.|||||..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CSEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4566889999999999775
No 466
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=68.39 E-value=2.2 Score=36.11 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=16.8
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
..|.-+.+.||.|+|||...
T Consensus 39 ~~Gei~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTL 58 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHH
Confidence 35788999999999999753
No 467
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=68.22 E-value=2.2 Score=36.24 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=16.7
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
..|.-+.+.||.|+|||...
T Consensus 30 ~~Ge~~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFL 49 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35788899999999999753
No 468
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=68.19 E-value=2.2 Score=35.95 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=16.9
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
..|..+.+.||.|+|||...
T Consensus 24 ~~Ge~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLL 43 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 45788999999999999753
No 469
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=68.02 E-value=2.3 Score=35.99 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=16.8
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
..|.-+.+.||.|+|||...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLL 48 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45788899999999999753
No 470
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=67.99 E-value=2.3 Score=36.39 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=17.3
Q ss_pred hhcCCcEEEeCCCCCcchHHh
Q 015098 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 i~~~~~~li~~~tGsGKT~~~ 94 (413)
+..|..+.|.||.|+|||...
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLl 62 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVA 62 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHH
Confidence 345888999999999999653
No 471
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=67.82 E-value=3.2 Score=41.50 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=16.9
Q ss_pred CCcEEEeCCCCCcchHHhHH
Q 015098 77 GLDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~~~ 96 (413)
..++++.||+|+|||.++-.
T Consensus 201 ~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 56899999999999987643
No 472
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=67.81 E-value=2.3 Score=36.23 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=16.8
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
..|.-+.+.||.|+|||...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLL 50 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 35788899999999999753
No 473
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=67.78 E-value=2.9 Score=32.97 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=13.8
Q ss_pred cEEEeCCCCCcchHHh
Q 015098 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~ 94 (413)
-.+|.||+|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5689999999999764
No 474
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=67.56 E-value=2.3 Score=35.83 Aligned_cols=20 Identities=25% Similarity=0.159 Sum_probs=17.0
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
..|.-+.+.||.|+|||...
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLG 46 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45788999999999999754
No 475
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=67.56 E-value=2.4 Score=36.12 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=16.8
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
.+|.-+.+.||.|+|||...
T Consensus 48 ~~Gei~~liG~NGsGKSTLl 67 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFL 67 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEEcCCCCcHHHHH
Confidence 35788899999999999753
No 476
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=67.39 E-value=2.3 Score=36.88 Aligned_cols=16 Identities=19% Similarity=0.271 Sum_probs=14.1
Q ss_pred cEEEeCCCCCcchHHh
Q 015098 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~ 94 (413)
-+++.|++|||||..+
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999875
No 477
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=67.38 E-value=6.3 Score=30.99 Aligned_cols=17 Identities=41% Similarity=0.325 Sum_probs=13.8
Q ss_pred CcEEEeCCCCCcchHHh
Q 015098 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~ 94 (413)
.-+++.|+.|+|||...
T Consensus 7 ~~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLL 23 (174)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEEeCCCCCHHHHH
Confidence 34689999999999764
No 478
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=67.28 E-value=3.2 Score=37.42 Aligned_cols=19 Identities=21% Similarity=0.101 Sum_probs=16.4
Q ss_pred cCCcEEEeCCCCCcchHHh
Q 015098 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~li~~~tGsGKT~~~ 94 (413)
.|+.+++.||+|+|||..+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp TCCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999764
No 479
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=67.26 E-value=3.7 Score=36.03 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=13.5
Q ss_pred cEEEeCCCCCcchHHh
Q 015098 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~ 94 (413)
-+++.|+.|+|||...
T Consensus 6 v~~i~G~~GaGKTTll 21 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEEESSSSSCHHHH
T ss_pred EEEEEecCCCCHHHHH
Confidence 3689999999999764
No 480
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=67.24 E-value=8.8 Score=35.57 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=23.3
Q ss_pred hhhhhh---hcCCcEEEeCCCCCcchHHhHHHHHH
Q 015098 69 RGIVPF---CKGLDVIQQAQSGTGKTATFCSGILQ 100 (413)
Q Consensus 69 ~~~~~i---~~~~~~li~~~tGsGKT~~~~~~~~~ 100 (413)
+++..+ .+|+...|.++.|.|||..+...+.+
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~ 176 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 176 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHh
Confidence 445444 46999999999999999876544443
No 481
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=67.09 E-value=2.4 Score=35.20 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=16.9
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
..|.-+++.|+.|+|||..+
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~ 43 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVI 43 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHH
Confidence 35777899999999999875
No 482
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=66.86 E-value=2.5 Score=35.65 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=14.6
Q ss_pred cEEEeCCCCCcchHHhH
Q 015098 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~ 95 (413)
.+.|.|++|||||.++-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999998763
No 483
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=66.81 E-value=2.2 Score=34.52 Aligned_cols=18 Identities=28% Similarity=0.137 Sum_probs=15.2
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015098 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
+.-+.+.|+.|||||..+
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999765
No 484
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=66.73 E-value=2.4 Score=36.40 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=16.9
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
.+|.-+.+.||.|+|||...
T Consensus 45 ~~Ge~~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLL 64 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 35788999999999999753
No 485
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=66.53 E-value=21 Score=35.67 Aligned_cols=75 Identities=21% Similarity=0.227 Sum_probs=53.4
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhh-------cccCcEEEEEEcCcchHHHHHHHH---------cCCcEEEEccHHHHH
Q 015098 108 QCQALVLAPTRELAQQIEKVMRALG-------DYLGVKVHACVGGTSVREDQRILQ---------AGVHVVVGTPGRVFD 171 (413)
Q Consensus 108 ~~~~liv~P~~~l~~q~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~iii~T~~~l~~ 171 (413)
.+++||.+|++.-+....+.+.+.. ...++.+..++|+....++...+. ....|+|+|.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 4499999999999999988887632 224778899999988766554432 2457999993
Q ss_pred HHHcCCCCCCcceEEEe
Q 015098 172 MLRRQSLRPDYIKMFVL 188 (413)
Q Consensus 172 ~~~~~~~~~~~~~~iV~ 188 (413)
.+. .++++.++++||-
T Consensus 378 iae-~GidIp~v~~VId 393 (773)
T 2xau_A 378 IAE-TSLTIDGIVYVVD 393 (773)
T ss_dssp HHH-HTCCCTTEEEEEE
T ss_pred HHH-hCcCcCCeEEEEe
Confidence 333 3567777777663
No 486
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=66.45 E-value=50 Score=30.76 Aligned_cols=74 Identities=14% Similarity=0.101 Sum_probs=49.4
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----HHcCCcEEEEccHHHHHHHHcCCCCCCcceE
Q 015098 110 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKM 185 (413)
Q Consensus 110 ~~liv~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~ 185 (413)
+.++++.+..-+..+.+.+.+. +..+..++|+......... .....+|+|+|++.+. .++++.++++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~-----~GiDip~v~~ 419 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS-----TGISVKNLHH 419 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH-----HSCCCCSEEE
T ss_pred CeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh-----cccccccCcE
Confidence 5555555566555555555543 4478888888775544332 3456789999976654 3678888999
Q ss_pred EEeccch
Q 015098 186 FVLDEAD 192 (413)
Q Consensus 186 iV~DE~h 192 (413)
||+....
T Consensus 420 vi~~~~~ 426 (510)
T 2oca_A 420 VVLAHGV 426 (510)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9988776
No 487
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=65.80 E-value=33 Score=30.74 Aligned_cols=97 Identities=11% Similarity=0.177 Sum_probs=61.1
Q ss_pred EEEeccccchHHH-HHHHHHhh----cccceEEEEccHHHHHHHHHHhhhC----CCeeEEecCCCCHHHHHHHHHHHhc
Q 015098 257 YVNVEKEEWKLET-LCDLYETL----AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRS 327 (413)
Q Consensus 257 ~~~~~~~~~~~~~-l~~~~~~~----~~~~~lif~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~ 327 (413)
+...++..+|.-. +..++... .+.+++|.++++..+..+.+.++.. +..+....|+..... ..+.+..
T Consensus 81 lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 157 (414)
T 3eiq_A 81 IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQM 157 (414)
T ss_dssp EECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH---HHHHHTT
T ss_pred EEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHH---HHHHHhc
Confidence 4445555555543 33333322 4568999999999888887777653 567777777765433 3445566
Q ss_pred CCCcEEEEcCC-----C-CCCCCCCCCcEEEEccC
Q 015098 328 GSSRVLITTDL-----L-ARGIDVQQVSLVINYDL 356 (413)
Q Consensus 328 ~~~~vli~t~~-----~-~~G~d~~~~~~vi~~~~ 356 (413)
+..+|+|+|+- + ...++...+++||....
T Consensus 158 ~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEa 192 (414)
T 3eiq_A 158 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEA 192 (414)
T ss_dssp TCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSH
T ss_pred CCCCEEEECHHHHHHHHHcCCcccccCcEEEEECH
Confidence 78899999951 1 22345666788776543
No 488
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=65.73 E-value=2.3 Score=38.30 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.1
Q ss_pred CcEEEeCCCCCcchHHh
Q 015098 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~ 94 (413)
.-.++.|+||+|||.+.
T Consensus 26 gl~vi~G~NGaGKT~il 42 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 44689999999999764
No 489
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=65.69 E-value=4.3 Score=41.18 Aligned_cols=18 Identities=22% Similarity=0.171 Sum_probs=15.4
Q ss_pred CcEEEeCCCCCcchHHhH
Q 015098 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~ 95 (413)
.++++.||+|+|||..+-
T Consensus 589 ~~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAK 606 (854)
T ss_dssp EEEEEBSCSSSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 368999999999998753
No 490
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=65.58 E-value=3.4 Score=35.18 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=16.9
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
..|.-+.+.||.|+|||...
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLS 63 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35788999999999999754
No 491
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=65.52 E-value=1.8 Score=34.02 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=13.5
Q ss_pred cEEEeCCCCCcchHHh
Q 015098 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~ 94 (413)
.+.+++++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999765
No 492
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=65.52 E-value=2.9 Score=42.04 Aligned_cols=20 Identities=25% Similarity=0.227 Sum_probs=17.1
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
..+.++++.||+|+|||..+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHH
Confidence 34678999999999999765
No 493
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=65.16 E-value=11 Score=35.49 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=50.3
Q ss_pred ccceEEEEccHHHHHHHHHHhhhC----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCC-----CCCC-C-CCCC
Q 015098 279 ITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----LARG-I-DVQQ 347 (413)
Q Consensus 279 ~~~~lif~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-----~~~G-~-d~~~ 347 (413)
++++||++|+++-+..+.+.++.. +..+..++|+.+...+...+. +..+|+|+|+- +..+ + ++..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999998887777666654 889999999986544322221 24779999962 2222 3 5667
Q ss_pred CcEEEEccC
Q 015098 348 VSLVINYDL 356 (413)
Q Consensus 348 ~~~vi~~~~ 356 (413)
+++||....
T Consensus 128 ~~~vViDEa 136 (555)
T 3tbk_A 128 FTLMIFDEC 136 (555)
T ss_dssp CSEEEETTG
T ss_pred CCEEEEECc
Confidence 788886543
No 494
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=65.09 E-value=2.5 Score=36.40 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=15.1
Q ss_pred CcEEEeCCCCCcchHHhH
Q 015098 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~ 95 (413)
..+.+.|++|||||.++-
T Consensus 76 ~iI~I~G~~GSGKSTva~ 93 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQ 93 (281)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 358999999999998763
No 495
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=64.90 E-value=2.8 Score=36.26 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=14.6
Q ss_pred CCcEEEeCCCCCcchHHh
Q 015098 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~li~~~tGsGKT~~~ 94 (413)
+.-+.|.|++|||||..+
T Consensus 31 ~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345789999999999765
No 496
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=64.61 E-value=1.4 Score=35.90 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=13.2
Q ss_pred EEEeCCCCCcchHHh
Q 015098 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~li~~~tGsGKT~~~ 94 (413)
+++.|+.|||||..+
T Consensus 3 I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 688999999999765
No 497
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=64.29 E-value=2.8 Score=36.66 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=16.4
Q ss_pred hcCCcEEEeCCCCCcchHHh
Q 015098 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~li~~~tGsGKT~~~ 94 (413)
..|.-+.|.||.|||||..+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEECCCCchHHHHH
Confidence 44667889999999999764
No 498
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=64.27 E-value=3 Score=33.81 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=14.0
Q ss_pred CcEEEeCCCCCcchHHh
Q 015098 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~ 94 (413)
.-.+|.||+|+|||.+.
T Consensus 24 ~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 34688999999999764
No 499
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=64.18 E-value=3 Score=33.62 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=14.4
Q ss_pred cEEEeCCCCCcchHHhH
Q 015098 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~li~~~tGsGKT~~~~ 95 (413)
.+.|.+++|||||.++-
T Consensus 4 ~i~i~G~~GsGKst~~~ 20 (208)
T 3ake_A 4 IVTIDGPSASGKSSVAR 20 (208)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998763
No 500
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=64.12 E-value=6.5 Score=33.02 Aligned_cols=34 Identities=15% Similarity=0.043 Sum_probs=21.6
Q ss_pred CcEEEeCCCCCcchHHhHHHHHHccccCCCceeEEEEc
Q 015098 78 LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLA 115 (413)
Q Consensus 78 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~liv~ 115 (413)
.-+++.+..|+|||..+...+... ..+ .+++++-
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l-~~g---~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYL-EDN---YKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH-TTT---SCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH-HCC---CeEEEEe
Confidence 357889999999997754443332 222 2666554
Done!