Query 015099
Match_columns 413
No_of_seqs 181 out of 428
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 03:06:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015099.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015099hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1348 Asparaginyl peptidases 100.0 1E-131 2E-136 971.2 32.1 406 5-412 48-477 (477)
2 PF01650 Peptidase_C13: Peptid 100.0 2.6E-72 5.7E-77 544.8 19.5 230 5-249 3-256 (256)
3 KOG1349 Gpi-anchor transamidas 100.0 5.3E-63 1.1E-67 467.6 13.7 231 6-251 32-292 (309)
4 COG5206 GPI8 Glycosylphosphati 100.0 2.8E-54 6E-59 410.6 13.2 230 6-250 32-291 (382)
5 PF00656 Peptidase_C14: Caspas 98.9 4.5E-09 9.9E-14 99.3 7.1 164 21-221 22-230 (248)
6 KOG1546 Metacaspase involved i 97.3 0.0013 2.8E-08 66.1 9.0 108 22-146 86-211 (362)
7 smart00115 CASc Caspase, inter 96.5 0.014 3.1E-07 56.4 9.1 163 22-222 31-214 (241)
8 cd00032 CASc Caspase, interleu 96.1 0.037 7.9E-07 53.6 9.6 163 21-222 32-218 (243)
9 PF14538 Raptor_N: Raptor N-te 89.9 0.42 9.2E-06 43.6 4.2 73 56-147 70-152 (154)
10 PF12770 CHAT: CHAT domain 86.1 0.63 1.4E-05 45.0 3.1 45 91-142 145-201 (287)
11 PF01364 Peptidase_C25: Peptid 71.8 4.5 9.8E-05 41.4 4.1 104 88-221 238-351 (378)
12 COG4249 Uncharacterized protei 59.1 7.1 0.00015 40.7 2.6 60 86-149 132-207 (380)
13 TIGR02855 spore_yabG sporulati 52.2 12 0.00027 37.3 2.9 60 92-155 157-222 (283)
14 TIGR00109 hemH ferrochelatase. 50.4 87 0.0019 31.7 8.8 108 7-135 155-266 (322)
15 PF05582 Peptidase_U57: YabG p 46.2 18 0.00038 36.4 2.9 60 92-155 158-223 (287)
16 PF13848 Thioredoxin_6: Thiore 45.6 75 0.0016 28.1 6.8 107 29-146 33-143 (184)
17 PF12554 MOZART1: Mitotic-spin 42.4 40 0.00086 25.0 3.6 26 369-394 21-46 (48)
18 KOG1803 DNA helicase [Replicat 33.4 32 0.0007 38.0 2.7 47 2-48 475-535 (649)
19 PF07912 ERp29_N: ERp29, N-ter 29.1 84 0.0018 27.9 4.1 44 28-71 72-119 (126)
20 PRK00035 hemH ferrochelatase; 25.4 3.4E+02 0.0074 27.2 8.4 109 6-135 154-268 (333)
21 TIGR02094 more_P_ylases alpha- 25.1 1.7E+02 0.0037 32.4 6.6 68 90-167 425-492 (601)
22 PRK12435 ferrochelatase; Provi 24.9 5.6E+02 0.012 25.9 9.8 109 7-135 139-253 (311)
23 PRK10649 hypothetical protein; 24.2 46 0.00099 36.6 2.0 18 83-100 448-465 (577)
24 COG4566 TtrR Response regulato 24.1 75 0.0016 30.4 3.1 36 89-125 77-121 (202)
25 TIGR00376 DNA helicase, putati 21.5 2.1E+02 0.0046 31.9 6.4 46 3-48 481-538 (637)
26 PF13709 DUF4159: Domain of un 21.3 1.8E+02 0.004 27.6 5.2 65 60-139 21-90 (207)
27 PF10655 DUF2482: Hypothetical 21.0 59 0.0013 27.5 1.5 35 4-38 63-97 (100)
28 COG2194 Predicted membrane-ass 20.9 55 0.0012 36.0 1.7 16 84-99 441-456 (555)
29 cd03007 PDI_a_ERp29_N PDIa fam 20.8 1.8E+02 0.004 25.2 4.6 40 29-68 70-113 (116)
No 1
>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-131 Score=971.21 Aligned_cols=406 Identities=58% Similarity=0.987 Sum_probs=393.6
Q ss_pred CceeeecccccccchhhhhhhhhHHHHhcCCCCCcEEEEee------------------------cCCccccCCCCCCCH
Q 015099 5 FVWVELYRSLYSYSHYCIKDQPSEYVIKFFITTTTIIFFMV------------------------SSFMWQDYTGEDVTV 60 (413)
Q Consensus 5 ~~~v~~sr~~~nyrH~~n~~~~y~~l~~~gi~d~~Iil~~~------------------------~~~v~iDY~g~~vt~ 60 (413)
-|+|--|-.||||||+|++-..||+||+.|||++||++||+ |.|||+||+|++|||
T Consensus 48 aVLVAGSngyyNYRHQADvcHAYqiLrkgGikeEnIvv~MYDDIA~~~~NPrpG~iiN~P~G~DvY~GvpkDYtg~~Vt~ 127 (477)
T KOG1348|consen 48 AVLVAGSNGYYNYRHQADVCHAYQILRKGGIKEENIVVMMYDDIANNEENPRPGVIINRPNGKDVYQGVPKDYTGEDVTP 127 (477)
T ss_pred EEEEecCCcccchhhhhhHHHHHHHHHhcCCCchhEEEEEehhhhcCCCCCCCceeecCCCchhhhcCCCCcccCCcCCH
Confidence 47899999999999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCceEEEeeeccc
Q 015099 61 ENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACE 140 (413)
Q Consensus 61 ~nfl~vL~G~~~~~~~~s~kvl~s~~~D~VFiY~t~HG~~g~l~fp~~~~l~a~dL~~~l~~m~~~~~y~~~v~~iEaC~ 140 (413)
+||++||.|++++++|||||||+|+|||||||||+||||||+|+||+++.|+++||+++|++||+.++|++||||+||||
T Consensus 128 ~Nf~aVllGd~savkGGsGKV~~SgpnDhiFiYytDHG~pGvl~mP~~~~l~akdlnevL~kmhk~k~Y~~mvfYlEACE 207 (477)
T KOG1348|consen 128 QNFLAVLLGDASAVKGGSGKVLKSGPNDHIFIYYTDHGGPGVLGMPTSPDLYAKDLNEVLKKMHKSKTYKKMVFYLEACE 207 (477)
T ss_pred HHHHHHHhcccccccCCCceeeccCCCceEEEEEecCCCCceEecCCCcchhHHHHHHHHHHHHhccchheEEEEeeecc
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred ccccccccCCCCCcEEEEeccCCCCccccccCCCCCCCCCCCcccchhhhhhhhhccccccccCccccHHHHHHHHHhhh
Q 015099 141 SGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRT 220 (413)
Q Consensus 141 SgSm~~~~l~~~~nv~~~tAs~~~EsSy~~~~~~~~~~~~~~~~t~lgD~fs~~wme~~~~~~~~~~Tl~~~f~~v~~~t 220 (413)
|||||+++||+|+||||+||||+.||||++|||+++|.|+.++.|||||+||++||||||.+|+.+|||.|||+.||++|
T Consensus 208 SGSmfegiLp~~lnIYatTAaNa~ESSwgtycp~~~psppse~~tcLGDlySV~WmeDSd~hdL~kETL~qQYhlVK~rt 287 (477)
T KOG1348|consen 208 SGSMFEGILPKNLNIYATTAANARESSWGTYCPGEYPSPPSEYSTCLGDLYSVNWMEDSDVHDLKKETLHQQYHLVKKRT 287 (477)
T ss_pred CcchhhhhccCCCcEEEeecCCccccccceeCCCCCCCChhhcccccccceeeeeeccCccccchHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCceeecCCccccccceeecccCCCCCCccccCCCCCCcCCccccccchhHHHHHHHHHcCCCCcHHHHHHHH
Q 015099 221 ASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLLHFWDKYRKAPEGTPRKAEAQK 300 (413)
Q Consensus 221 ~~~~t~~Shv~~yGd~~~~~~~v~~f~g~~~~~~~~~~~~~~~l~~~~~~v~sRDa~L~~L~~k~~~a~~~~~ek~~a~~ 300 (413)
+.....|||||||||..|++++|..|||.+|+++++++. +.+..++++.|||||+||++||+|++++++++.++.++++
T Consensus 288 ~~s~s~gsHVmqyGd~~iske~l~lfqG~~pa~~nf~l~-~~s~~~~s~~~n~rD~~L~~l~~k~rka~dgs~~s~e~~k 366 (477)
T KOG1348|consen 288 NTSYSYGSHVMQYGDKTISKEKLMLFQGMKPANENFTLP-ASSHKSPSGLTNQRDAPLLHLWRKYRKANDGSAESRELQK 366 (477)
T ss_pred CCCCCCcceeeecCcchhhHHHHHHHcCCCcccCCCCCC-ccCcCCccccCCCCCccHHHHHHHHhcCcccchhhHHHHH
Confidence 998789999999999999999999999999999999887 4455567889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccCCCCCCCcCCcchHHHHHHHHhhhcCCCchhhhhHHHHHHHHhc
Q 015099 301 QFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICN 380 (413)
Q Consensus 301 eL~~~l~~R~~id~~v~~I~~ll~g~~~~~~~l~~~r~~g~plv~d~dCyk~~V~~Fe~~Cg~l~eY~lk~~~~laNLC~ 380 (413)
+|.++++||++||+++..|+.++||. +...+|+.+|+.|+||++||+|+|.+|++|++|||+++||||||||+|+||||
T Consensus 367 ~i~~~~~hR~~id~sV~~I~~llf~~-~~~~~l~~vr~~g~Plvddw~C~k~~v~~F~~hCg~~~~YglKh~~~~aN~Cn 445 (477)
T KOG1348|consen 367 EILRHKDHRKHIDKSVRLIVSLLFGS-EGEAVLNQVRSEGQPLVDDWDCLKSAVRHFETHCGSTYEYGLKHMRVLANMCN 445 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc-chHHHHHHhhcCCCCccchHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999988 34468888999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHhhhcCCCCCCCCCcccCCC
Q 015099 381 TGIGKEKMAEASAQACENIPSGPWSSLDKGFS 412 (413)
Q Consensus 381 ~g~~~~~i~~Ai~~vC~~~~~~~~~~~~~~~~ 412 (413)
.|++.++|.+|+.++|...+..+|.++..|||
T Consensus 446 ~g~~~e~~~~A~~~aC~~~~~~~~~~~~~gfs 477 (477)
T KOG1348|consen 446 KGVPLEQIELAMDQACLGIYTEPWSSLRRGFS 477 (477)
T ss_pred cCccHHHHHHHHHhHhcCCccccchhhcccCC
Confidence 99999999999999999999999999999997
No 2
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=100.00 E-value=2.6e-72 Score=544.85 Aligned_cols=230 Identities=44% Similarity=0.702 Sum_probs=220.4
Q ss_pred CceeeecccccccchhhhhhhhhHHHHhcCCCCCcEEEEee------------------------cCCccccCCCCCCCH
Q 015099 5 FVWVELYRSLYSYSHYCIKDQPSEYVIKFFITTTTIIFFMV------------------------SSFMWQDYTGEDVTV 60 (413)
Q Consensus 5 ~~~v~~sr~~~nyrH~~n~~~~y~~l~~~gi~d~~Iil~~~------------------------~~~v~iDY~g~~vt~ 60 (413)
.|+|.+||+||||||+||++.+|++||++||||+|||||++ |+|++|||+|.+||+
T Consensus 3 AvlvagS~~~~NYRh~ad~~~~Y~~l~~~G~~~~~Iil~~~dd~a~~~~Np~~g~i~~~~~~~n~y~~~~iDY~g~~v~~ 82 (256)
T PF01650_consen 3 AVLVAGSNGWFNYRHQADVCHAYQLLKRNGIPDENIILMMYDDIACNPRNPFPGKIFNDPDGTNVYKGVEIDYRGEDVTP 82 (256)
T ss_pred EEEEeccCCceeeeEehHHHHHHHHHHHcCCCCceEEEEecCCccchhhCCCCceEEeCCCcccccCCccccccccccCH
Confidence 58999999999999999999999999999999999999998 678999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCceEEEeeeccc
Q 015099 61 ENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACE 140 (413)
Q Consensus 61 ~nfl~vL~G~~~~~~~~s~kvl~s~~~D~VFiY~t~HG~~g~l~fp~~~~l~a~dL~~~l~~m~~~~~y~~~v~~iEaC~ 140 (413)
+||++||+|+++ + +++|||+|+++|+|||||+||||+|+|+||+.+.|+++||+++|++|+++++||||||++|||+
T Consensus 83 ~~fl~vL~G~~~-~--~~~kvl~s~~~D~vfiy~~~HG~~~~l~~~~~~~l~~~~L~~~L~~m~~~~~y~~lv~~veaC~ 159 (256)
T PF01650_consen 83 ENFLNVLTGDKS-V--PSGKVLNSTENDNVFIYFTGHGGPGFLKFPDGEELTADDLADALDKMHEKKRYKKLVFVVEACY 159 (256)
T ss_pred HHHHHHhcCCCC-C--CccccccCCCCCeEEEEEeccCCCCcccCCCcccccHHHHHHHHHHHHhhCCcceEEEEEeccc
Confidence 999999999998 4 5689999999999999999999999999998888999999999999999999999999999999
Q ss_pred ccccccccCCCCCcEEEEeccCCCCccccccCCCCCCCCCCCcccchhhhhhhhhccccccccCccccHHHHHHHHHhhh
Q 015099 141 SGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRT 220 (413)
Q Consensus 141 SgSm~~~~l~~~~nv~~~tAs~~~EsSy~~~~~~~~~~~~~~~~t~lgD~fs~~wme~~~~~~~~~~Tl~~~f~~v~~~t 220 (413)
|||||+. |++++||++||||+++|+||+|+|++ ++++|||||+||.+||++++.++++++||.+||+.|+++|
T Consensus 160 SGs~~~~-L~~~~nv~~iTAa~~~e~Sy~~~~~~------~~~~~~l~d~fs~~~m~~~~~~~~~~~Tl~~~f~~v~~~~ 232 (256)
T PF01650_consen 160 SGSFFEG-LLKSPNVYVITAANADESSYGCYCSD------DSIGTYLGDAFSYNWMEDSDSHPLSEETLDDQFEYVKRKT 232 (256)
T ss_pred ccchhhc-cCCCCCEEEEecCCcccccccccccc------cccccEeHHHHHHHhhhhhccCCccccCHHHHHHHHHHhc
Confidence 9999999 67889999999999999999999932 4899999999999999999998899999999999999998
Q ss_pred cccCCCCCCceeecCCccccccceeeccc
Q 015099 221 ASYNSYGSHVMQYGDIGLSKNNLFTYLGT 249 (413)
Q Consensus 221 ~~~~t~~Shv~~yGd~~~~~~~v~~f~g~ 249 (413)
.. |||++|||.++.+++|++|+|.
T Consensus 233 ~~-----shv~~~gd~s~~~~~v~~f~g~ 256 (256)
T PF01650_consen 233 TG-----SHVQQYGDPSIPQLPVSEFQGT 256 (256)
T ss_pred cc-----chHHhcCCCCccccCHHHhcCC
Confidence 87 9999999999999999999984
No 3
>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-63 Score=467.64 Aligned_cols=231 Identities=22% Similarity=0.345 Sum_probs=210.4
Q ss_pred ceeeecccccccchhhhhhhhhHHHHhcCCCCCcEEEEee--------------------------cCCccccCCCCCCC
Q 015099 6 VWVELYRSLYSYSHYCIKDQPSEYVIKFFITTTTIIFFMV--------------------------SSFMWQDYTGEDVT 59 (413)
Q Consensus 6 ~~v~~sr~~~nyrH~~n~~~~y~~l~~~gi~d~~Iil~~~--------------------------~~~v~iDY~g~~vt 59 (413)
|.|+|||+||||||+||+|++|+.+||+||||+|||||++ .+.|++||+|.+||
T Consensus 32 VLv~tSRfwfNYRH~aNvl~~YrsvKrlGipDsqIilmladd~acn~RN~~pg~Vy~n~~~~~nlygd~vevdyrgyevt 111 (309)
T KOG1349|consen 32 VLVCTSRFWFNYRHVANVLSVYRSVKRLGIPDSQIILMLADDMACNSRNPRPGTVYNNENHALNLYGDDVEVDYRGYEVT 111 (309)
T ss_pred EEEecchhhhhHHHHHHHHHHHHHHHHcCCCcccEEEEeccccccccCCCCCcceeccccccccccCCcceeecccchhH
Confidence 7899999999999999999999999999999999999999 25689999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCceEEEeeecc
Q 015099 60 VENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEAC 139 (413)
Q Consensus 60 ~~nfl~vL~G~~~~~~~~s~kvl~s~~~D~VFiY~t~HG~~g~l~fp~~~~l~a~dL~~~l~~m~~~~~y~~~v~~iEaC 139 (413)
+|||+++|+|+.+..+|+|+| |.+++.+|||||+|||||+|||||||.++|+.+||++++++|++++||++|+|+||+|
T Consensus 112 vEnflr~LTgR~~~~tprSKr-lltDe~SNIlIYmtGHGgd~FlKFqd~eelts~dLadai~qm~e~~Ryneil~miDTC 190 (309)
T KOG1349|consen 112 VENFLRVLTGRHPNNTPRSKR-LLTDEGSNILIYLTGHGGDGFLKFQDAEELTSDDLADAIQQMWEKKRYNEILFMIDTC 190 (309)
T ss_pred HHHHHHHHcCCCCCCCchhhh-hcccCCCcEEEEEccCCCccceecccHHHhhhHHHHHHHHHHHHhhhhceEEEEeecc
Confidence 999999999999999999876 7899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCcEEEEeccCCCCccccccCCCCCCCCCCCcccchhhhhhhhhccccccc-cCccccHHHHHHHHHh
Q 015099 140 ESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIH-NLRTETLHQQYELVKT 218 (413)
Q Consensus 140 ~SgSm~~~~l~~~~nv~~~tAs~~~EsSy~~~~~~~~~~~~~~~~t~lgD~fs~~wme~~~~~-~~~~~Tl~~~f~~v~~ 218 (413)
+|.||++.+.+ |||+|+++|..+|+||+++.|+ +||+++.|.|++..++..++. +-...||+++|+.+.+
T Consensus 191 Qaasly~~~~s--PNVLav~SS~~ge~SySh~~d~-------~Igv~vIDrftyy~l~flek~~~~~~~~l~dl~~s~~~ 261 (309)
T KOG1349|consen 191 QAASLYERFYS--PNVLAVASSLVGEPSYSHHSDS-------DIGVYVIDRFTYYTLEFLEKGIGAKNRTLQDLFDSCPK 261 (309)
T ss_pred chHHHHHhhcC--CCeEEEeecccCCcccccCCCc-------ccceeeeccchHHHHHHHHhcccchhhhHHHHHHhCCh
Confidence 99999999855 6999999999999999999987 889999999999888776653 3344589999999999
Q ss_pred hhcccCCCCCCceeecCC---ccccccceeecccCC
Q 015099 219 RTASYNSYGSHVMQYGDI---GLSKNNLFTYLGTNP 251 (413)
Q Consensus 219 ~t~~~~t~~Shv~~yGd~---~~~~~~v~~f~g~~~ 251 (413)
+... |+|-..-|+ ...+.++++|||...
T Consensus 262 ~~~~-----St~gvr~dl~~r~~~~v~itDFFg~vr 292 (309)
T KOG1349|consen 262 RLLG-----STPGVRTDLYQRDPKDVLITDFFGSVR 292 (309)
T ss_pred hhhc-----CCcCcccccccCCcccceeeeecccce
Confidence 9887 877655544 567789999999753
No 4
>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-54 Score=410.60 Aligned_cols=230 Identities=19% Similarity=0.270 Sum_probs=204.1
Q ss_pred ceeeecccccccchhhhhhhhhHHHHhcCCCCCcEEEEee--------------------------cCCccccCCCCCCC
Q 015099 6 VWVELYRSLYSYSHYCIKDQPSEYVIKFFITTTTIIFFMV--------------------------SSFMWQDYTGEDVT 59 (413)
Q Consensus 6 ~~v~~sr~~~nyrH~~n~~~~y~~l~~~gi~d~~Iil~~~--------------------------~~~v~iDY~g~~vt 59 (413)
|.++|||+||||||+||+|++|+.|||+||||+|||||++ .+.++|||+|.+||
T Consensus 32 vLlstSRfwfNYRHmANVl~~Yr~vkrlGipDsQIilm~~dd~acnsRnlfpgsvf~N~Dra~dlyge~~eidY~gyevT 111 (382)
T COG5206 32 VLLSTSRFWFNYRHMANVLVFYRVVKRLGIPDSQIILMSYDDQACNSRNLFPGSVFNNSDRAGDLYGEDSEIDYSGYEVT 111 (382)
T ss_pred EEEecccceeehhhhhhHHHHHHHHHHcCCCcceEEEEechhhhhhhcccCCcccccCcccccceeCcccccccccccch
Confidence 7899999999999999999999999999999999999998 25679999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCceEEEeeecc
Q 015099 60 VENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEAC 139 (413)
Q Consensus 60 ~~nfl~vL~G~~~~~~~~s~kvl~s~~~D~VFiY~t~HG~~g~l~fp~~~~l~a~dL~~~l~~m~~~~~y~~~v~~iEaC 139 (413)
+|+|.+.|+.+..+-+|.|++ |.+++++||||||+||||++||+|+|.++++.+||++++++|+++|||++++|+||+|
T Consensus 112 ve~firLLt~r~~en~p~sKr-lltdE~SNIfIYmtGHGgd~FlKFqdaeemtseDladai~ql~~~kRyNeIlfmiDTC 190 (382)
T COG5206 112 VEVFIRLLTARSGENHPKSKR-LLTDESSNIFIYMTGHGGDAFLKFQDAEEMTSEDLADAISQLAAKKRYNEILFMIDTC 190 (382)
T ss_pred HHHHHHHHHhhccCCChhhhh-hcccccCcEEEEEccCCCccceecccHHHhhhHHHHHHHHHHHHhhhhceEEEEeecc
Confidence 999999999998888887765 7899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCcEEEEeccCCCCccccccCCCCCCCCCCCcccchhhhhhhhhcccccc-ccCccccHHHHHHHHHh
Q 015099 140 ESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDI-HNLRTETLHQQYELVKT 218 (413)
Q Consensus 140 ~SgSm~~~~l~~~~nv~~~tAs~~~EsSy~~~~~~~~~~~~~~~~t~lgD~fs~~wme~~~~-~~~~~~Tl~~~f~~v~~ 218 (413)
|+.+|+++..+ |||+|+++|.-++|||+++.|. ++|.-+.|.|++.+++..++ .-.++.||++++...-.
T Consensus 191 QAnaly~k~ys--PNvLavgsSeig~ssyShhsd~-------~IgvaVIDrFty~~l~fle~id~~skltlqDL~~s~n~ 261 (382)
T COG5206 191 QANALYDKSYS--PNVLAVGSSEIGQSSYSHHSDS-------LIGVAVIDRFTYFFLKFLEKIDIGSKLTLQDLLASLNK 261 (382)
T ss_pred ccchhhhhccC--CceEEEeccccCCccccccchh-------hhhHHHhhcchHHHHHHHhhcCcCCeeEHHHHHHhcCc
Confidence 99999998765 5999999999999999999986 78888888888887776655 33578999999998876
Q ss_pred hhcccCCCCCCceeec---CCccccccceeecccC
Q 015099 219 RTASYNSYGSHVMQYG---DIGLSKNNLFTYLGTN 250 (413)
Q Consensus 219 ~t~~~~t~~Shv~~yG---d~~~~~~~v~~f~g~~ 250 (413)
+... |||-..- |..-++--+++|+|..
T Consensus 262 e~ih-----S~~gv~~~~fdr~p~d~litDFF~nV 291 (382)
T COG5206 262 EPIH-----SHVGVRELVFDRRPSDFLITDFFANV 291 (382)
T ss_pred cccc-----CCCCcccccccCCccceeehHhhhhh
Confidence 6655 9986532 3334455578999864
No 5
>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A ....
Probab=98.86 E-value=4.5e-09 Score=99.31 Aligned_cols=164 Identities=21% Similarity=0.262 Sum_probs=113.8
Q ss_pred hhhhhhhHHHHhcCCCCCcEEEEeecCCccccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCC
Q 015099 21 CIKDQPSEYVIKFFITTTTIIFFMVSSFMWQDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP 100 (413)
Q Consensus 21 ~n~~~~y~~l~~~gi~d~~Iil~~~~~~v~iDY~g~~vt~~nfl~vL~G~~~~~~~~s~kvl~s~~~D~VFiY~t~HG~~ 100 (413)
.++-.|...|+++|++..+| ++. ++|.+++++.|+--.. ...++|.|+|||+|||..
T Consensus 22 ~D~~~~~~~L~~~gf~~~~~-l~~------------~~t~~~i~~~l~~l~~----------~~~~~D~~~~yfsGHG~~ 78 (248)
T PF00656_consen 22 NDAEAMAEALEKLGFDVENI-LID------------NATRANILKALRELLQ----------RAQPGDSVVFYFSGHGIQ 78 (248)
T ss_dssp HHHHHHHHHHHHTTEEEEEE-EEE------------SSSHHHHHHHHHHHHT----------SGGTCSEEEEEEESEEET
T ss_pred HHHHHHHHHHHHcCCceeec-ccc------------chHHHHHHHHHhhhhc----------cCCCCCeeEEEEeccccc
Confidence 57889999999999999998 331 2999999999983211 124899999999999965
Q ss_pred --CC----cCCCCCCCCCHHH---HHHHHHHHHHcCC-Cc-eEEEeeecccccccccccC--------------------
Q 015099 101 --GV----LGMPTSRYIYADE---LIDVLKKKHASGN-YK-SLVFYLEACESGSIFEGLL-------------------- 149 (413)
Q Consensus 101 --g~----l~fp~~~~l~a~d---L~~~l~~m~~~~~-y~-~~v~~iEaC~SgSm~~~~l-------------------- 149 (413)
+. +.-.++..+..+. +.+.|..+..+.. -+ + +|++|+|+||.+.....
T Consensus 79 ~~~~~~~~~~~~d~~~~~~d~~~~~~~~l~~~~~~~~~~~~k-~~ilD~C~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (248)
T PF00656_consen 79 VDGEGGDEDSGYDGYLLPLDANLILDDELRDLLCKSLPKKPK-LFILDCCRSGGFIDGLSSSSGESSKREERKLSSSIPP 157 (248)
T ss_dssp ETTCCSTEEEETSSEEEEHHHHEEHHHHTSTTTTGGGTTS-E-EEEEESESSSBTBCEEEEEESSSTSS-EECHCCCCCC
T ss_pred cCCccCcccccccceeeecchhhhHHHHHhhhhhhhccCCcc-EEeeccccCCccCCccccccccccccccccccccccc
Confidence 21 1111333344444 6777777766522 22 4 99999999999866311
Q ss_pred --------CCCCcEEEEeccCCCCccccccCCCCCCCCCCCcccchhhhhhhhhccccccc------cCccccHHHHHHH
Q 015099 150 --------PEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIH------NLRTETLHQQYEL 215 (413)
Q Consensus 150 --------~~~~nv~~~tAs~~~EsSy~~~~~~~~~~~~~~~~t~lgD~fs~~wme~~~~~------~~~~~Tl~~~f~~ 215 (413)
+...++++++|+.++|.||.. ++ ..- -+|+..+++-.... .....+|.+++..
T Consensus 158 ~~~~~~~~~~~~~~~~~~as~~~~~s~e~--~~------~~~-----g~ft~~L~~~L~~~~~~~~~~~~~~~l~~~~~~ 224 (248)
T PF00656_consen 158 EDPNRSDVPSPSGFIVLSASRPGQTSYED--SP------GSG-----GLFTYALLEALKGNAADDPNQSWDELLEELLTE 224 (248)
T ss_dssp SSCCSEEEETTTSEEEEESSSTTBCEEEE--CT------TTE-----EHHHHHHHHHHHHHTTTSTTCCTTSBHHHHHHH
T ss_pred cccccccccCCCCcEEEEeccccceeecc--cC------ccC-----HHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 122489999999999999998 21 122 26888888765321 2235799999999
Q ss_pred HHhhhc
Q 015099 216 VKTRTA 221 (413)
Q Consensus 216 v~~~t~ 221 (413)
+.+++.
T Consensus 225 v~~~~~ 230 (248)
T PF00656_consen 225 VNQKVA 230 (248)
T ss_dssp HHHHHH
T ss_pred HHhHCC
Confidence 998873
No 6
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0013 Score=66.09 Aligned_cols=108 Identities=18% Similarity=0.179 Sum_probs=70.2
Q ss_pred hhhhhhHH-HHhcCCCCCcEEEEeecCCccccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCC
Q 015099 22 IKDQPSEY-VIKFFITTTTIIFFMVSSFMWQDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP 100 (413)
Q Consensus 22 n~~~~y~~-l~~~gi~d~~Iil~~~~~~v~iDY~g~~vt~~nfl~vL~G~~~~~~~~s~kvl~s~~~D~VFiY~t~HG~~ 100 (413)
+|..|++. +.++|++.++|+++.=-+. |. -.--|.+|+.+.|.-- |....++|-+|+=|||||+.
T Consensus 86 Dv~~M~~~Lv~rfGFs~ddI~~LtDt~~---s~-~~~PT~~Nir~Al~wL----------V~~aq~gD~LvfHYSGHGtr 151 (362)
T KOG1546|consen 86 DVHRMRKLLVERFGFSEDDILMLTDTDE---SP-VRIPTGKNIRRALRWL----------VESAQPGDSLVFHYSGHGTR 151 (362)
T ss_pred HHHHHHHHHHHhhCCChhheEEEecCCC---cc-cccCcHHHHHHHHHHH----------HhcCCCCCEEEEEecCCCCc
Confidence 35567765 5789999999877743221 11 1235779999999822 33346789999999999983
Q ss_pred -------CCcCCCC----------CCCCCHHHHHHHHHHHHHcCCCceEEEeeeccccccccc
Q 015099 101 -------GVLGMPT----------SRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFE 146 (413)
Q Consensus 101 -------g~l~fp~----------~~~l~a~dL~~~l~~m~~~~~y~~~v~~iEaC~SgSm~~ 146 (413)
..-+|.+ |..|..++.....+.+- .=-++-.++|+|+||++.+
T Consensus 152 ~~~~~gDe~dG~DE~I~P~D~~t~G~iIdDe~~r~lV~plp---~G~~lt~I~DSCHSGgliD 211 (362)
T KOG1546|consen 152 QPDTNGDEVDGYDETIVPCDHNTQGPIIDDEIFRILVRPLP---KGCKLTAISDSCHSGGLID 211 (362)
T ss_pred CCCCCCCCCCCCcceeecccccccccccchHHHHHHHhccC---CCceEEEEeecccCCCccc
Confidence 1222211 11344555555555442 2357889999999999988
No 7
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=96.48 E-value=0.014 Score=56.43 Aligned_cols=163 Identities=15% Similarity=0.206 Sum_probs=99.8
Q ss_pred hhhhhhHHHHhcCCCCCcEEEEeecCCccccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCC
Q 015099 22 IKDQPSEYVIKFFITTTTIIFFMVSSFMWQDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPG 101 (413)
Q Consensus 22 n~~~~y~~l~~~gi~d~~Iil~~~~~~v~iDY~g~~vt~~nfl~vL~G~~~~~~~~s~kvl~s~~~D~VFiY~t~HG~~g 101 (413)
++-.+-++++++|+. +. ...+.|.+.+.++|.--. .+ .+-...|-+++||.+||+.|
T Consensus 31 D~~~l~~~f~~lgF~---V~------------~~~dlt~~em~~~l~~~~-------~~-~~~~~~d~~v~~~~sHG~~~ 87 (241)
T smart00115 31 DAENLTELFQSLGYE---VH------------VKNNLTAEEMLEELKEFA-------ER-PEHSDSDSFVCVLLSHGEEG 87 (241)
T ss_pred HHHHHHHHHHHCCCE---EE------------EecCCCHHHHHHHHHHHH-------hc-cccCCCCEEEEEEcCCCCCC
Confidence 677788888888882 11 134678888888887321 11 12245678899999999999
Q ss_pred CcCCCCCCCCCHHHHHHHHHHHH-HcCCCceEEEeeecccccccccc--------------------cCCCCCcEEEEec
Q 015099 102 VLGMPTSRYIYADELIDVLKKKH-ASGNYKSLVFYLEACESGSIFEG--------------------LLPEGLNIYATTA 160 (413)
Q Consensus 102 ~l~fp~~~~l~a~dL~~~l~~m~-~~~~y~~~v~~iEaC~SgSm~~~--------------------~l~~~~nv~~~tA 160 (413)
.|.-.|+..+.-++|.+.|..-. ..-+-|=-+|+|+||...-+-.+ .+|...++++.=|
T Consensus 88 ~l~~~D~~~v~l~~i~~~f~~~~c~~L~~kPKlffiqACRg~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~D~li~ys 167 (241)
T smart00115 88 GIYGTDHSPLPLDEIFSLFNGDNCPSLAGKPKLFFIQACRGDELDGGVPVEDDVDDPPTEFEDDAIYKIPVEADFLAAYS 167 (241)
T ss_pred eEEEecCCEEEHHHHHHhccccCChhhcCCCcEEEEeCCCCCCCCCCeecccccccccccccccccccCCCcCcEEEEEe
Confidence 88877776677788777773211 01122445889999975422111 1233346777777
Q ss_pred cCCCCccccccCCCCCCCCCCCcccchhhhhhhhhccccccccCccccHHHHHHHHHhhhcc
Q 015099 161 SNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTAS 222 (413)
Q Consensus 161 s~~~EsSy~~~~~~~~~~~~~~~~t~lgD~fs~~wme~~~~~~~~~~Tl~~~f~~v~~~t~~ 222 (413)
+.++.-||-. +..|+. |.-...+-...+ -..+.|.++|..|.+++..
T Consensus 168 T~pG~va~r~----------~~~gS~----fi~~L~~~l~~~-~~~~~l~~ilt~V~~~V~~ 214 (241)
T smart00115 168 TTPGYVSWRN----------PTRGSW----FIQSLCQVLKEY-ARSLDLLDILTEVNRKVAV 214 (241)
T ss_pred CCCCeEeecC----------CCCCch----HHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhh
Confidence 7777666643 122332 222222222111 2467899999999998875
No 8
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=96.08 E-value=0.037 Score=53.56 Aligned_cols=163 Identities=13% Similarity=0.177 Sum_probs=101.2
Q ss_pred hhhhhhhHHHHhcCCCCCcEEEEeecCCccccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCC
Q 015099 21 CIKDQPSEYVIKFFITTTTIIFFMVSSFMWQDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP 100 (413)
Q Consensus 21 ~n~~~~y~~l~~~gi~d~~Iil~~~~~~v~iDY~g~~vt~~nfl~vL~G~~~~~~~~s~kvl~s~~~D~VFiY~t~HG~~ 100 (413)
-++-.+-++++++|+. +. ...++|.+.+.+.|.--.. + +....|-+++||.+||..
T Consensus 32 ~D~~~l~~~f~~lgF~---V~------------~~~nlt~~~~~~~l~~f~~-------~--~~~~~d~~v~~~~sHG~~ 87 (243)
T cd00032 32 VDAENLTKLFESLGYE---VE------------VKNNLTAEEILEELKEFAS-------P--DHSDSDSFVCVILSHGEE 87 (243)
T ss_pred HHHHHHHHHHHHCCCE---EE------------EeCCCCHHHHHHHHHHHHh-------c--cCCCCCeeEEEECCCCCC
Confidence 3566778888888882 11 1357788888888873211 1 234567788999999999
Q ss_pred CCcCCCCCCCCCHHHHHHHHHHHH-HcCCCceEEEeeecccccccccc-----------------------cCCCCCcEE
Q 015099 101 GVLGMPTSRYIYADELIDVLKKKH-ASGNYKSLVFYLEACESGSIFEG-----------------------LLPEGLNIY 156 (413)
Q Consensus 101 g~l~fp~~~~l~a~dL~~~l~~m~-~~~~y~~~v~~iEaC~SgSm~~~-----------------------~l~~~~nv~ 156 (413)
|.|.-.|+..+.-++|.+.|..-. ..-+-|=-+|+|+||...-.-.+ ..|...+++
T Consensus 88 ~~l~~~D~~~v~l~~i~~~f~~~~~~sl~~kPKl~~iqACRg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~l 167 (243)
T cd00032 88 GGIYGTDGDVVPIDEITSLFNGDNCPSLAGKPKLFFIQACRGDELDLGVEVDSGADEPPDVETEAEDDAVQTIPVEADFL 167 (243)
T ss_pred CEEEEecCcEEEHHHHHHhhccCCCccccCCCcEEEEECCCCCcCCCceeccCccccccccccccccccccCCCCcccEE
Confidence 988776766677778777765211 11223556899999997654221 123334777
Q ss_pred EEeccCCCCccccccCCCCCCCCCCCcccchhhhhhhhhccccccccCccccHHHHHHHHHhhhcc
Q 015099 157 ATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTAS 222 (413)
Q Consensus 157 ~~tAs~~~EsSy~~~~~~~~~~~~~~~~t~lgD~fs~~wme~~~~~~~~~~Tl~~~f~~v~~~t~~ 222 (413)
+.=|+.++.-||-.- ..|+. |.-.+.+-.. +.-..+.|.+++..|.+++..
T Consensus 168 v~ysT~pG~~a~r~~----------~~gS~----fi~~l~~~l~-~~~~~~~l~~il~~V~~~V~~ 218 (243)
T cd00032 168 VAYSTVPGYVSWRNT----------KKGSW----FIQSLCQVLR-KYAHSLDLLDILTKVNRKVAE 218 (243)
T ss_pred EEecCCCCeEeecCC----------CCCCE----eHHHHHHHHH-HhCCCCcHHHHHHHHHHHHhh
Confidence 777777777766431 12322 2222222211 112357899999999998865
No 9
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=89.86 E-value=0.42 Score=43.58 Aligned_cols=73 Identities=18% Similarity=0.337 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCC------CcCCCCCC----CCCHHHHHHHHHHHHH
Q 015099 56 EDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPG------VLGMPTSR----YIYADELIDVLKKKHA 125 (413)
Q Consensus 56 ~~vt~~nfl~vL~G~~~~~~~~s~kvl~s~~~D~VFiY~t~HG~~g------~l~fp~~~----~l~a~dL~~~l~~m~~ 125 (413)
-|.|++.+.+.+..-. ...+++.|.+.|.|||-|- +-.|.+.. .++-.||.+.+.
T Consensus 70 ~dpt~e~~~~~~~~~R-----------~~a~~~RvLFHYnGhGvP~Pt~~GeIw~f~~~~tqyip~si~dL~~~lg---- 134 (154)
T PF14538_consen 70 LDPTVEDLKRLCQSLR-----------RNAKDERVLFHYNGHGVPRPTENGEIWVFNKNYTQYIPLSIYDLQSWLG---- 134 (154)
T ss_pred cCCCHHHHHHHHHHHH-----------hhCCCceEEEEECCCCCCCCCCCCeEEEEcCCCCcceEEEHHHHHHhcC----
Confidence 4789999999887431 1344588999999999984 55554432 478888888877
Q ss_pred cCCCceEEEeeecccccccccc
Q 015099 126 SGNYKSLVFYLEACESGSIFEG 147 (413)
Q Consensus 126 ~~~y~~~v~~iEaC~SgSm~~~ 147 (413)
.-.+|+.|...||++++.
T Consensus 135 ----~Psi~V~DC~~AG~il~~ 152 (154)
T PF14538_consen 135 ----SPSIYVFDCSNAGSILNA 152 (154)
T ss_pred ----CCEEEEEECCcHHHHHHh
Confidence 568999999999998764
No 10
>PF12770 CHAT: CHAT domain
Probab=86.06 E-value=0.63 Score=45.00 Aligned_cols=45 Identities=29% Similarity=0.480 Sum_probs=32.9
Q ss_pred EEEeecCCCCC-------CcCCC-----CCCCCCHHHHHHHHHHHHHcCCCceEEEeeeccccc
Q 015099 91 FIFYSDHGGPG-------VLGMP-----TSRYIYADELIDVLKKKHASGNYKSLVFYLEACESG 142 (413)
Q Consensus 91 FiY~t~HG~~g-------~l~fp-----~~~~l~a~dL~~~l~~m~~~~~y~~~v~~iEaC~Sg 142 (413)
.|.|++||... .|.+. ++..|++.+|.+ ++- .+ -+ ++++-||+||
T Consensus 145 ilH~a~Hg~~~~~~~~~~~l~l~~~~~~~~~~l~~~~l~~-l~l---~~--~~-lVvLsaC~s~ 201 (287)
T PF12770_consen 145 ILHFAGHGTFDPDPPDQSGLVLSDESGQEDGLLSAEELAQ-LDL---RG--PR-LVVLSACESA 201 (287)
T ss_pred EEEEEcccccCCCCCCCCEEEEeccCCCCCcccCHHHHHh-hcC---CC--CC-EEEecCcCCc
Confidence 68999999876 66675 345699999988 321 11 33 6689999999
No 11
>PF01364 Peptidase_C25: Peptidase family C25 This family belongs to family C25 of the peptidase classification.; InterPro: IPR001769 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C25 (gingipain, clan CD). The protein fold of the peptidase domain for members of this entry resembles that of caspase 1, the type example for clan CD. This is a protein family found only in the bacteria. Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=71.83 E-value=4.5 Score=41.44 Aligned_cols=104 Identities=22% Similarity=0.233 Sum_probs=49.3
Q ss_pred CeEEEEeecCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCceEEEeeeccccccc-ccc-------c--CCCCCcEEE
Q 015099 88 DHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSI-FEG-------L--LPEGLNIYA 157 (413)
Q Consensus 88 D~VFiY~t~HG~~g~l~fp~~~~l~a~dL~~~l~~m~~~~~y~~~v~~iEaC~SgSm-~~~-------~--l~~~~nv~~ 157 (413)
...||.|.|||++... ..+.++.+|+. .|. ...|--|++.-||..|.+ ... + .|++--|-.
T Consensus 238 G~~~v~y~GHG~~~~w---~~~~~~~~d~~-~l~-----N~~~~p~~~s~~C~~g~fd~~~~~sl~E~~v~~~~gGAia~ 308 (378)
T PF01364_consen 238 GAGFVNYFGHGSPTSW---ADEDFTSSDIS-NLN-----NKNKLPVVISAACYTGNFDDPDNPSLGEALVLNPNGGAIAF 308 (378)
T ss_dssp --SEEEEES-B-SSBB---TTT--BTTTGG-G--------TT---EEEEESSSTT-TTSSS---HHHHHHTTEE-S-SEE
T ss_pred CCeEEEEecCCchhhc---ccCcccHhHHH-Hhc-----CCCCceEEEEeECCCcCCCCCCCCcHHHHheECCCCcEEEE
Confidence 3468899999999855 22224444432 222 223556778889999988 333 1 233223555
Q ss_pred EeccCCCCccccccCCCCCCCCCCCcccchhhhhhhhhccccccccCccccHHHHHHHHHhhhc
Q 015099 158 TTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTA 221 (413)
Q Consensus 158 ~tAs~~~EsSy~~~~~~~~~~~~~~~~t~lgD~fs~~wme~~~~~~~~~~Tl~~~f~~v~~~t~ 221 (413)
++++. .+|... .+.|...|++...... ..+|.+.+...|....
T Consensus 309 ig~s~---~~~~~~----------------~~~~~~~~~~~l~~~~--~~~lG~a~~~a~~~~~ 351 (378)
T PF01364_consen 309 IGSSR---VSYASP----------------NDRLNRGFYEALFNSN--MDTLGEALRQAKNYYL 351 (378)
T ss_dssp EEESS-----SSHH----------------HHHHHHHHTT-STT------BHHHHHHHHHHHHH
T ss_pred Eecce---eEecch----------------HHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHH
Confidence 55544 444331 4556666665443321 2289999888877554
No 12
>COG4249 Uncharacterized protein containing caspase domain [General function prediction only]
Probab=59.12 E-value=7.1 Score=40.74 Aligned_cols=60 Identities=27% Similarity=0.470 Sum_probs=38.0
Q ss_pred CCCeEEEEeecCCCCC-------CcCCCCC---------CCCCHHHHHHHHHHHHHcCCCceEEEeeecccccccccccC
Q 015099 86 PNDHIFIFYSDHGGPG-------VLGMPTS---------RYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLL 149 (413)
Q Consensus 86 ~~D~VFiY~t~HG~~g-------~l~fp~~---------~~l~a~dL~~~l~~m~~~~~y~~~v~~iEaC~SgSm~~~~l 149 (413)
+.|+++.||+|||... ++.|-.. .-+... ...+.++. ..-++-+.++++|.+|.+|....
T Consensus 132 ~~d~~~~~fsG~g~~~~~d~~~~lia~~t~p~~~a~~~~~~~s~~---~~~~~~~~-~~~~~ql~~~d~~~~~~~~~~~~ 207 (380)
T COG4249 132 PADTILFFFSGHGATPGADGRAYLIAFDTRPGAVAYDGEGGISPY---SVAQALHL-SEPGNQLVDLDACVRGDVFKATA 207 (380)
T ss_pred hhhhhhheeeccccccCCCCceeEEeecCChhhhcccCCCcccHH---HHHHHHHh-ccCCceeehhhhhcchhhhcccc
Confidence 3799999999999862 3333111 112222 23333333 34466788999999999998754
No 13
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=52.22 E-value=12 Score=37.34 Aligned_cols=60 Identities=20% Similarity=0.389 Sum_probs=43.5
Q ss_pred EEeecCCCCCCcC----CCC-CCCCCHHHHHHHHHHHHHcC-CCceEEEeeecccccccccccCCCCCcE
Q 015099 92 IFYSDHGGPGVLG----MPT-SRYIYADELIDVLKKKHASG-NYKSLVFYLEACESGSIFEGLLPEGLNI 155 (413)
Q Consensus 92 iY~t~HG~~g~l~----fp~-~~~l~a~dL~~~l~~m~~~~-~y~~~v~~iEaC~SgSm~~~~l~~~~nv 155 (413)
+-+|||-| +++ |.| ..+-.++-+.++.+..-+-. -+-++|++.-|||| -||.+|..+-|-
T Consensus 157 lViTGHD~--~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y~~~~D~LVIFAGACQS--~yEall~AGANF 222 (283)
T TIGR02855 157 LVITGHDA--YSKNKGNYMDLNAYRHSKYFVETVREARKYVPSLDQLVIFAGACQS--HFESLIRAGANF 222 (283)
T ss_pred EEEeCchh--hhcCCCChhhhhhhhhhHHHHHHHHHHHhcCCCcccEEEEcchhHH--HHHHHHHcCccc
Confidence 45799954 433 222 23678889999999876633 67899999999997 788887665554
No 14
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=50.36 E-value=87 Score=31.74 Aligned_cols=108 Identities=18% Similarity=0.166 Sum_probs=66.4
Q ss_pred eeeecccccccchhhhhh--hhhHHHHhcCCCCCcEEEEeecCCccccC--CCCCCCHHHHHHHHcCCCCCCCCCCCccc
Q 015099 7 WVELYRSLYSYSHYCIKD--QPSEYVIKFFITTTTIIFFMVSSFMWQDY--TGEDVTVENFFAVILGNKTALTGGSGKVV 82 (413)
Q Consensus 7 ~v~~sr~~~nyrH~~n~~--~~y~~l~~~gi~d~~Iil~~~~~~v~iDY--~g~~vt~~nfl~vL~G~~~~~~~~s~kvl 82 (413)
-+..-+.||+.-...+++ .+...+.+.+-+ +...|++++.|+|..| +|+. =++.+.+.-..-. +.+
T Consensus 155 ~~~~i~~~~~~p~yi~a~~~~I~~~l~~~~~~-~~~~llfSaHglP~~~~~~Gd~-Y~~~~~~ta~~l~--------~~l 224 (322)
T TIGR00109 155 TISVIESWYDNPKYIKALADSIKETLASFPEP-DNAVLLFSAHGLPQSYVDEGDP-YPAECEATTRLIA--------EKL 224 (322)
T ss_pred eEEEeCccccCcHHHHHHHHHHHHHHHhcCCc-CCcEEEEeCCCCchhHhhCCCC-hHHHHHHHHHHHH--------HHc
Confidence 466788999999998887 677777776544 4445666789999777 4543 2233332222110 012
Q ss_pred cCCCCCeEEEEeecCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCceEEEe
Q 015099 83 DSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFY 135 (413)
Q Consensus 83 ~s~~~D~VFiY~t~HG~~g~l~fp~~~~l~a~dL~~~l~~m~~~~~y~~~v~~ 135 (413)
. ...+..+.|.|+.|..-.++ | ++.++|+++.++ .+++++++
T Consensus 225 ~-~~~~~~~~fQS~~g~~~Wl~-P--------~~~~~l~~l~~~-G~k~V~vv 266 (322)
T TIGR00109 225 G-FPNEYRLTWQSRVGPEPWLG-P--------YTEELLEKLGEQ-GVQHIVVV 266 (322)
T ss_pred C-CCCCeEEEEeCCCCCCCcCC-C--------CHHHHHHHHHHc-CCceEEEE
Confidence 1 12457788999888533332 2 456678887765 56777764
No 15
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=46.24 E-value=18 Score=36.40 Aligned_cols=60 Identities=28% Similarity=0.522 Sum_probs=42.5
Q ss_pred EEeecCCCCCCcCC----CC-CCCCCHHHHHHHHHHHHH-cCCCceEEEeeecccccccccccCCCCCcE
Q 015099 92 IFYSDHGGPGVLGM----PT-SRYIYADELIDVLKKKHA-SGNYKSLVFYLEACESGSIFEGLLPEGLNI 155 (413)
Q Consensus 92 iY~t~HG~~g~l~f----p~-~~~l~a~dL~~~l~~m~~-~~~y~~~v~~iEaC~SgSm~~~~l~~~~nv 155 (413)
+-+|||-| +++= .| ..+=.++-+.++.+..-+ ..-+-++|++.-|||| -||.+|..+-|-
T Consensus 158 lViTGHD~--~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~~D~LVIfAGACQS--~fEall~AGANF 223 (287)
T PF05582_consen 158 LVITGHDG--YLKNKKDYSDLNNYRNSKYFVEAVKEARKYEPNLDDLVIFAGACQS--HFEALLEAGANF 223 (287)
T ss_pred EEEeCchh--hhcCCCChhhhhhhhccHHHHHHHHHHHhcCCCcccEEEEcchhHH--HHHHHHHcCccc
Confidence 45799965 3332 22 235577888899887755 4567899999999997 788887666554
No 16
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=45.62 E-value=75 Score=28.07 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=66.5
Q ss_pred HHHhcCCCCCcEEEEeecCCccccCCCCCCCHHHHHHHHcCCCCCCCC----CCCccccCCCCCeEEEEeecCCCCCCcC
Q 015099 29 YVIKFFITTTTIIFFMVSSFMWQDYTGEDVTVENFFAVILGNKTALTG----GSGKVVDSGPNDHIFIFYSDHGGPGVLG 104 (413)
Q Consensus 29 ~l~~~gi~d~~Iil~~~~~~v~iDY~g~~vt~~nfl~vL~G~~~~~~~----~s~kvl~s~~~D~VFiY~t~HG~~g~l~ 104 (413)
..+++|++...|+++=.+.+-+++|.|...+++.+.+-+.-..-+..+ .+-..+..++...+.++|...-
T Consensus 33 ~~~~~~~~~p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~------ 106 (184)
T PF13848_consen 33 LAKKYGIKEPTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPELTPENFEKLFSSPKPPVLILFDNKD------ 106 (184)
T ss_dssp HHHHCTCSSSEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEESTTHHHHHHSTSSEEEEEEEETTT------
T ss_pred HHHHhCCCCCcEEEeccCCCCceecccccCCHHHHHHHHHHhccccccccchhhHHHHhcCCCceEEEEEEcCC------
Confidence 567799999998888766677799999988999999998876554332 1222233444454555553211
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCceEEEeeeccccccccc
Q 015099 105 MPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFE 146 (413)
Q Consensus 105 fp~~~~l~a~dL~~~l~~m~~~~~y~~~v~~iEaC~SgSm~~ 146 (413)
.-..+.+.+.|+...++.+-+=.+.++++=.-..+.+
T Consensus 107 -----~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~ 143 (184)
T PF13848_consen 107 -----NESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLK 143 (184)
T ss_dssp -----HHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHH
T ss_pred -----chhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHH
Confidence 1223667777777766555443455556543444544
No 17
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=42.36 E-value=40 Score=25.04 Aligned_cols=26 Identities=15% Similarity=0.409 Sum_probs=21.4
Q ss_pred hhHHHHHHHHhccCCCHHHHHHHHHh
Q 015099 369 MKHMRSLANICNTGIGKEKMAEASAQ 394 (413)
Q Consensus 369 lk~~~~laNLC~~g~~~~~i~~Ai~~ 394 (413)
...+....+||+.|+.++..++.|..
T Consensus 21 ~etL~ici~L~e~GVnPeaLA~vI~e 46 (48)
T PF12554_consen 21 RETLSICIELCENGVNPEALAAVIKE 46 (48)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 45677889999999999888877764
No 18
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=33.37 E-value=32 Score=38.02 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=38.6
Q ss_pred CCCCceeeecc--------------cccccchhhhhhhhhHHHHhcCCCCCcEEEEeecCC
Q 015099 2 SHPFVWVELYR--------------SLYSYSHYCIKDQPSEYVIKFFITTTTIIFFMVSSF 48 (413)
Q Consensus 2 ~~~~~~v~~sr--------------~~~nyrH~~n~~~~y~~l~~~gi~d~~Iil~~~~~~ 48 (413)
-+|+|||||+= +++|==-+.-+-.-|+.|...|++.+.|.+..+|.+
T Consensus 475 ~~PlvlvDT~~~~~~e~~~e~~~~~S~~N~gEa~Iv~~Hv~~L~~~gV~p~dIaVIsPY~a 535 (649)
T KOG1803|consen 475 KSPLVLVDTQGEKDEEKRGEEEELGSKYNEGEAKIVMEHVKRLLEAGVQPSDIAVISPYNA 535 (649)
T ss_pred CCcEEEEecccchhhhhccchhhccccCCHHHHHHHHHHHHHHHHcCCChhHeEEeccchH
Confidence 48999999973 445555566677889999999999999999999876
No 19
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=29.11 E-value=84 Score=27.94 Aligned_cols=44 Identities=23% Similarity=0.239 Sum_probs=30.8
Q ss_pred HHHHhcCCCCCc---EEEEeecCCccccCCC-CCCCHHHHHHHHcCCC
Q 015099 28 EYVIKFFITTTT---IIFFMVSSFMWQDYTG-EDVTVENFFAVILGNK 71 (413)
Q Consensus 28 ~~l~~~gi~d~~---Iil~~~~~~v~iDY~g-~~vt~~nfl~vL~G~~ 71 (413)
.+-+|+||++++ |+||.-...-+|.|.. .++|++++.+.++++.
T Consensus 72 ~Laery~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t 119 (126)
T PF07912_consen 72 ELAERYKIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNT 119 (126)
T ss_dssp HHHHHTT-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred HHHHHhCCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCC
Confidence 356789999997 6666545566899954 4699999999999763
No 20
>PRK00035 hemH ferrochelatase; Reviewed
Probab=25.36 E-value=3.4e+02 Score=27.25 Aligned_cols=109 Identities=17% Similarity=0.115 Sum_probs=62.2
Q ss_pred ceeeecccccccchhhhhh--hhhHHHHhcCCCCCcEEEEeecCCccccC--CCCCCCHHHHHHHHcCCCCCCCCCCCcc
Q 015099 6 VWVELYRSLYSYSHYCIKD--QPSEYVIKFFITTTTIIFFMVSSFMWQDY--TGEDVTVENFFAVILGNKTALTGGSGKV 81 (413)
Q Consensus 6 ~~v~~sr~~~nyrH~~n~~--~~y~~l~~~gi~d~~Iil~~~~~~v~iDY--~g~~vt~~nfl~vL~G~~~~~~~~s~kv 81 (413)
+-+...+.||+.-...+++ .+-..+.+.+-+++...|++++.|+|..+ +|+. -...+....+--.. +
T Consensus 154 ~~i~~i~~~~~~p~~i~~l~~~I~~~~~~~~~~~~~~~llfs~HG~P~~~~~~gd~-Y~~~~~~t~~~l~~-------~- 224 (333)
T PRK00035 154 PEIRFIRSYYDHPGYIEALAESIREALAKHGEDPEPDRLLFSAHGLPQRYIDKGDP-YQQQCEETARLLAE-------A- 224 (333)
T ss_pred CcEEEeCCccCCHHHHHHHHHHHHHHHHhcCcccCCcEEEEecCCCchHHhhcCCC-hHHHHHHHHHHHHH-------H-
Confidence 3456678899988887776 45556666666544455666789998887 3443 22222222110000 0
Q ss_pred ccCCCCCeEEEEeecCCCCCCcCC--CCCCCCCHHHHHHHHHHHHHcCCCceEEEe
Q 015099 82 VDSGPNDHIFIFYSDHGGPGVLGM--PTSRYIYADELIDVLKKKHASGNYKSLVFY 135 (413)
Q Consensus 82 l~s~~~D~VFiY~t~HG~~g~l~f--p~~~~l~a~dL~~~l~~m~~~~~y~~~v~~ 135 (413)
+.- +..++-+-|-.|-|++ .| | ++.++|+++.++ .+|+++++
T Consensus 225 l~~-~~~~~~~~fqs~~g~~--~Wl~P--------~~~~~l~~l~~~-g~k~V~v~ 268 (333)
T PRK00035 225 LGL-PDEDYDLTYQSRFGPE--PWLEP--------YTDDTLEELAEK-GVKKVVVV 268 (333)
T ss_pred hCC-CCCCeEEEeeCCCCCC--ccCCC--------CHHHHHHHHHHc-CCCeEEEE
Confidence 110 1223555555575555 55 3 456788888775 68888764
No 21
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=25.10 E-value=1.7e+02 Score=32.44 Aligned_cols=68 Identities=15% Similarity=0.278 Sum_probs=49.9
Q ss_pred EEEEeecCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCceEEEeeecccccccccccCCCCCcEEEEeccCCCCcc
Q 015099 90 IFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESS 167 (413)
Q Consensus 90 VFiY~t~HG~~g~l~fp~~~~l~a~dL~~~l~~m~~~~~y~~~v~~iEaC~SgSm~~~~l~~~~nv~~~tAs~~~EsS 167 (413)
+-+.|.|=|.|+ .-.++++.+.|..+.++..|+.-|++++ -+.-++.+.+.+ +-.|..+|.+.+-|.|
T Consensus 425 vq~V~~Gka~p~--------d~~gk~~i~~i~~la~~~~~~~kv~f~~-~Yd~~lA~~i~a-G~Dv~L~~Psr~~Eac 492 (601)
T TIGR02094 425 VQIVFAGKAHPA--------DGEGKEIIQRIVEFSKRPEFRGRIVFLE-NYDINLARYLVS-GVDVWLNNPRRPLEAS 492 (601)
T ss_pred eEEEEEEecCcc--------cchHHHHHHHHHHHHhcccCCCCEEEEc-CCCHHHHHHHhh-hheeEEeCCCCCcCCc
Confidence 556677888776 3569999999999987655765566666 356677777664 5689999888877765
No 22
>PRK12435 ferrochelatase; Provisional
Probab=24.87 E-value=5.6e+02 Score=25.90 Aligned_cols=109 Identities=11% Similarity=0.094 Sum_probs=62.4
Q ss_pred eeeecccccccchhhhhh--hhhHHHHhcCCCC-CcEEEEeecCCccccCC--CCCCCHHHHHHHHcCCCCCCCCCCCcc
Q 015099 7 WVELYRSLYSYSHYCIKD--QPSEYVIKFFITT-TTIIFFMVSSFMWQDYT--GEDVTVENFFAVILGNKTALTGGSGKV 81 (413)
Q Consensus 7 ~v~~sr~~~nyrH~~n~~--~~y~~l~~~gi~d-~~Iil~~~~~~v~iDY~--g~~vt~~nfl~vL~G~~~~~~~~s~kv 81 (413)
-+..-+.||+.-...+++ .+-..+.+.+-++ ++..|++++.|+|+.|. |+. =..........-.. +
T Consensus 139 ~~~~i~~~~~~p~yi~a~a~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i~~GDp-Y~~q~~~t~~~v~~-------~- 209 (311)
T PRK12435 139 TITSIESWYDEPKFIQYWADQIKETFAQIPEEEREKAVLIVSAHSLPEKIIAAGDP-YPDQLEETADLIAE-------Q- 209 (311)
T ss_pred eEEEeCCccCChHHHHHHHHHHHHHHHHcCcccccceEEEEecCCCchhHhhCCCC-HHHHHHHHHHHHHH-------H-
Confidence 456678899998888887 6777777775332 55667778899998884 542 22222111110000 0
Q ss_pred ccCCCCCeEEEEeecCC-CCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCceEEEe
Q 015099 82 VDSGPNDHIFIFYSDHG-GPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFY 135 (413)
Q Consensus 82 l~s~~~D~VFiY~t~HG-~~g~l~fp~~~~l~a~dL~~~l~~m~~~~~y~~~v~~ 135 (413)
| +-.+ +-+.|=.+| |++ .|=. =++.++|+++.+++..|+++++
T Consensus 210 l--~~~~-~~l~yQSr~~g~~--~WL~------P~t~d~l~~l~~~~G~k~v~vv 253 (311)
T PRK12435 210 A--NVEH-YAIGWQSEGNTPD--PWLG------PDVQDLTRDLYEEHGYKSFIYT 253 (311)
T ss_pred c--CCCC-CeEeeecCCCCCC--CCCC------CCHHHHHHHHHHhcCCceEEEE
Confidence 1 1113 344444575 454 3311 1456788888776567887654
No 23
>PRK10649 hypothetical protein; Provisional
Probab=24.23 E-value=46 Score=36.60 Aligned_cols=18 Identities=22% Similarity=0.634 Sum_probs=14.4
Q ss_pred cCCCCCeEEEEeecCCCC
Q 015099 83 DSGPNDHIFIFYSDHGGP 100 (413)
Q Consensus 83 ~s~~~D~VFiY~t~HG~~ 100 (413)
+...++.++||++|||..
T Consensus 448 k~~~~nt~iiy~SDHGe~ 465 (577)
T PRK10649 448 KATDPNGFLVYFSDHGEE 465 (577)
T ss_pred hcCCCCeEEEEECCCCcc
Confidence 344578999999999975
No 24
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=24.06 E-value=75 Score=30.38 Aligned_cols=36 Identities=22% Similarity=0.428 Sum_probs=26.6
Q ss_pred eEEEEeecCCC---------CCCcCCCCCCCCCHHHHHHHHHHHHH
Q 015099 89 HIFIFYSDHGG---------PGVLGMPTSRYIYADELIDVLKKKHA 125 (413)
Q Consensus 89 ~VFiY~t~HG~---------~g~l~fp~~~~l~a~dL~~~l~~m~~ 125 (413)
-=-||+||||- .|-+-|=.. .+..++|.++++...+
T Consensus 77 ~PVIfiTGhgDIpmaV~AmK~GAvDFLeK-P~~~q~Lldav~~Al~ 121 (202)
T COG4566 77 LPVIFLTGHGDIPMAVQAMKAGAVDFLEK-PFSEQDLLDAVERALA 121 (202)
T ss_pred CCEEEEeCCCChHHHHHHHHcchhhHHhC-CCchHHHHHHHHHHHH
Confidence 34589999997 355555444 4889999999998765
No 25
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=21.47 E-value=2.1e+02 Score=31.91 Aligned_cols=46 Identities=11% Similarity=0.128 Sum_probs=38.1
Q ss_pred CCCceeeecc------------cccccchhhhhhhhhHHHHhcCCCCCcEEEEeecCC
Q 015099 3 HPFVWVELYR------------SLYSYSHYCIKDQPSEYVIKFFITTTTIIFFMVSSF 48 (413)
Q Consensus 3 ~~~~~v~~sr------------~~~nyrH~~n~~~~y~~l~~~gi~d~~Iil~~~~~~ 48 (413)
.|++|+||+- +++|--.+.-++.+.+.|.+.|++.+.|-++.+|..
T Consensus 481 ~p~~fidt~g~~~~e~~~~~~~S~~N~~EA~~V~~~v~~l~~~g~~~~~IgVItPY~a 538 (637)
T TIGR00376 481 IPLLFIDTSGCELFELKEADSTSKYNPGEAELVSEIIQALVKMGVPANDIGVITPYDA 538 (637)
T ss_pred CCEEEEECCCccccccccCCCCCcCCHHHHHHHHHHHHHHHhcCCCcceEEEEcccHH
Confidence 5899999873 577777777788888888889999999999988754
No 26
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=21.25 E-value=1.8e+02 Score=27.56 Aligned_cols=65 Identities=15% Similarity=0.274 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCCCCCCCC--CCccccCCC---CCeEEEEeecCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCceEEE
Q 015099 60 VENFFAVILGNKTALTGG--SGKVVDSGP---NDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVF 134 (413)
Q Consensus 60 ~~nfl~vL~G~~~~~~~~--s~kvl~s~~---~D~VFiY~t~HG~~g~l~fp~~~~l~a~dL~~~l~~m~~~~~y~~~v~ 134 (413)
..||++.|+-+-+ +.++ ....+.-+. -+.=||||+|||... ++..++...=+.|.. +. ++
T Consensus 21 l~~L~~~l~~~t~-~~~~~~~~~~v~~~~~~L~~yP~ly~~g~~~~~---------~s~~e~~~Lr~Yl~~-GG----fl 85 (207)
T PF13709_consen 21 LRNLSRFLNQRTS-LEVGPEEPQAVDLDDDELFFYPFLYWPGHGDFP---------LSDEEIANLRRYLEN-GG----FL 85 (207)
T ss_pred HHHHHHHHHHHhC-CCccCCCCcccCCCchhHHhCCEEEEeCCCCCC---------CCHHHHHHHHHHHHc-CC----EE
Confidence 3677777764433 2222 112232222 245589999999652 455665555455543 32 55
Q ss_pred eeecc
Q 015099 135 YLEAC 139 (413)
Q Consensus 135 ~iEaC 139 (413)
++|+|
T Consensus 86 ~~D~~ 90 (207)
T PF13709_consen 86 LFDDR 90 (207)
T ss_pred EEECC
Confidence 66776
No 27
>PF10655 DUF2482: Hypothetical protein of unknown function (DUF2482); InterPro: IPR018917 This entry is represented by Bacteriophage 80, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. All the members of this very small, very short family are derived from bacteriophages, of the SA bacteriophages 11, Mu50B, system, and from the Staphylococcal_phi-Mu50B-like_prophages subsystem. All members are hypothetical proteins.
Probab=21.04 E-value=59 Score=27.48 Aligned_cols=35 Identities=14% Similarity=0.054 Sum_probs=26.6
Q ss_pred CCceeeecccccccchhhhhhhhhHHHHhcCCCCC
Q 015099 4 PFVWVELYRSLYSYSHYCIKDQPSEYVIKFFITTT 38 (413)
Q Consensus 4 ~~~~v~~sr~~~nyrH~~n~~~~y~~l~~~gi~d~ 38 (413)
||=++....-==||+-.+|+..+|...|-+||.|+
T Consensus 63 ~~~lanlL~n~~~f~dI~nvi~~~Klqk~l~idd~ 97 (100)
T PF10655_consen 63 PFGLANLLDNADNFKDIVNVIQMRKLQKFLGIDDN 97 (100)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcccCc
Confidence 33333333334489999999999999999999986
No 28
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=20.93 E-value=55 Score=35.97 Aligned_cols=16 Identities=31% Similarity=0.750 Sum_probs=12.8
Q ss_pred CCCCCeEEEEeecCCC
Q 015099 84 SGPNDHIFIFYSDHGG 99 (413)
Q Consensus 84 s~~~D~VFiY~t~HG~ 99 (413)
....+.++||+||||-
T Consensus 441 ~~~~~~~liY~SDHGE 456 (555)
T COG2194 441 DKKDNTSLIYFSDHGE 456 (555)
T ss_pred hCCCCeEEEEEcCccH
Confidence 3334889999999996
No 29
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=20.78 E-value=1.8e+02 Score=25.22 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=28.4
Q ss_pred HHHhcCCCCC---cEEEEeecC-CccccCCCCCCCHHHHHHHHc
Q 015099 29 YVIKFFITTT---TIIFFMVSS-FMWQDYTGEDVTVENFFAVIL 68 (413)
Q Consensus 29 ~l~~~gi~d~---~Iil~~~~~-~v~iDY~g~~vt~~nfl~vL~ 68 (413)
+..++||.++ -|+|+.-.+ .-+++|.|.+.|.+.+++-++
T Consensus 70 L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~ 113 (116)
T cd03007 70 LGERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLK 113 (116)
T ss_pred HHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHH
Confidence 5578888754 455554321 146899998899999998776
Done!