Your job contains 1 sequence.
>015100
MVTTVAPPLSLPPSAGSRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLK
KIPQVSRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPITK
VIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQ
NWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAV
PDLKLKIEGVKENEGEGQDKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEVL
DEDELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKKVAKVKKD
ELSSDMKNEDVGKQKKQKKVGLSLKNDEEKSSGKEKKKSMLGKVKKEKKKLVA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 015100
(413 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2098979 - symbol:AT3G58660 species:3702 "Arabi... 635 4.1e-75 2
TAIR|locus:2041554 - symbol:AT2G42650 species:3702 "Arabi... 614 6.4e-60 1
TAIR|locus:2202260 - symbol:AT1G06380 species:3702 "Arabi... 500 7.7e-48 1
UNIPROTKB|F1N8V1 - symbol:RSL1D1 "Uncharacterized protein... 230 7.2e-21 2
UNIPROTKB|J3QSV6 - symbol:RSL1D1 "Ribosomal L1 domain-con... 229 1.4e-18 1
UNIPROTKB|O76021 - symbol:RSL1D1 "Ribosomal L1 domain-con... 222 1.2e-17 1
UNIPROTKB|I3LG73 - symbol:RSL1D1 "Uncharacterized protein... 197 4.5e-14 1
UNIPROTKB|Q1PG84 - symbol:Rsl1d1 "PBK1" species:10092 "Mu... 192 2.8e-13 1
UNIPROTKB|A4FV97 - symbol:RSL1D1 "Ribosomal L1 domain-con... 192 3.1e-13 1
UNIPROTKB|E2R7S5 - symbol:RSL1D1 "Uncharacterized protein... 192 3.2e-13 1
ASPGD|ASPL0000008098 - symbol:AN6698 species:162425 "Emer... 126 7.3e-11 3
UNIPROTKB|I3L3U9 - symbol:RSL1D1 "Ribosomal L1 domain-con... 142 1.1e-10 2
UNIPROTKB|I3L3C4 - symbol:RSL1D1 "Ribosomal L1 domain-con... 141 2.1e-09 1
RGD|1359295 - symbol:Rsl1d1 "ribosomal L1 domain containi... 152 3.9e-08 1
POMBASE|SPAC8F11.04 - symbol:SPAC8F11.04 "U3 snoRNP-assoc... 135 1.9e-06 1
UNIPROTKB|I3L234 - symbol:RSL1D1 "Ribosomal L1 domain-con... 106 1.7e-05 1
POMBASE|SPCC306.07c - symbol:SPCC306.07c "U3 snoRNP-assoc... 121 4.4e-05 1
FB|FBgn0032050 - symbol:CG13096 species:7227 "Drosophila ... 111 0.00039 2
>TAIR|locus:2098979 [details] [associations]
symbol:AT3G58660 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0015934 "large ribosomal subunit" evidence=IEA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] [GO:0001510 "RNA methylation"
evidence=RCA] [GO:0006164 "purine nucleotide biosynthetic process"
evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] InterPro:IPR002143 InterPro:IPR016094
InterPro:IPR023674 Pfam:PF00687 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0016020 GO:GO:0006412
GO:GO:0003723 GO:GO:0003735 GO:GO:0015934 SUPFAM:SSF56808
EMBL:AL353032 Gene3D:3.30.190.20 eggNOG:NOG247516 KO:K14775
OMA:IEKACGS ProtClustDB:CLSN2683932 EMBL:AY070404 IPI:IPI00521804
PIR:T49149 RefSeq:NP_191425.1 ProteinModelPortal:Q9LXT5 SMR:Q9LXT5
STRING:Q9LXT5 PaxDb:Q9LXT5 PRIDE:Q9LXT5 EnsemblPlants:AT3G58660.1
GeneID:825035 KEGG:ath:AT3G58660 TAIR:At3g58660
HOGENOM:HOG000091059 InParanoid:Q9LXT5 PhylomeDB:Q9LXT5
ArrayExpress:Q9LXT5 Genevestigator:Q9LXT5 Uniprot:Q9LXT5
Length = 446
Score = 635 (228.6 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 124/231 (53%), Positives = 159/231 (68%)
Query: 17 SRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLP 76
SRVSPKTVE A+ L+ W S+T+KPQLLE+D+ VYL +TLKKIPQ +RTNA++IPLP
Sbjct: 22 SRVSPKTVESALNGLINWRSDKSKTEKPQLLEEDELVYLFVTLKKIPQKTRTNAYRIPLP 81
Query: 77 HSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPXXXXXXXXXXXXDYRPFEA 136
H L+ N + + PEICLI+DDRPKS LTKD MKKIK++N+P DY+ FEA
Sbjct: 82 HPLI-NPTVDSPEICLIIDDRPKSGLTKDDAMKKIKSENIPITKVIKLSKLKSDYKAFEA 140
Query: 137 KRKLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWKEQIEKVCGSALLY 196
KRKLCDSYD+F D+R++ +DLKH+NWK QIEK CGSA+ +
Sbjct: 141 KRKLCDSYDMFFTDRRIIPLLPRVIGKKFFTSKKIPVALDLKHRNWKHQIEKACGSAMFF 200
Query: 197 LRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKI 247
+RTGTCSV+KVGK+SM +I ENV+A +NGL+E L + V L LK+
Sbjct: 201 IRTGTCSVIKVGKLSMDICEITENVMATLNGLVEFLPNK-WTYVRSLHLKL 250
Score = 141 (54.7 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 34/72 (47%), Positives = 42/72 (58%)
Query: 228 LLESLALPVYQAVPDLKLKIEGVKENEGEGQD-KDSEKEN--AEDVNDHGSXXXXXXXXG 284
L ESLALP+YQ+VPDLKLKI+ + Q+ K+ E E A D + G
Sbjct: 250 LSESLALPIYQSVPDLKLKIDAFGSGKSVVQEEKEGEVEEVVAVDGGEKSVTGKGKKKKG 309
Query: 285 RIHEVRYMDSTI 296
RIHEVRYMDS +
Sbjct: 310 RIHEVRYMDSNV 321
>TAIR|locus:2041554 [details] [associations]
symbol:AT2G42650 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006412 "translation" evidence=IEA] [GO:0015934
"large ribosomal subunit" evidence=IEA] InterPro:IPR002143
InterPro:IPR016094 InterPro:IPR023674 Pfam:PF00687 EMBL:CP002685
GO:GO:0006412 GO:GO:0003723 GO:GO:0003735 EMBL:AC007087
GO:GO:0015934 SUPFAM:SSF56808 Gene3D:3.30.190.20 KO:K14775
EMBL:AY954832 IPI:IPI00543256 PIR:E84856 RefSeq:NP_181793.1
UniGene:At.36987 ProteinModelPortal:Q8S8D2 SMR:Q8S8D2 PRIDE:Q8S8D2
EnsemblPlants:AT2G42650.1 GeneID:818865 KEGG:ath:AT2G42650
TAIR:At2g42650 InParanoid:Q8S8D2 OMA:AELCLIV PhylomeDB:Q8S8D2
ProtClustDB:CLSN2683932 Genevestigator:Q8S8D2 Uniprot:Q8S8D2
Length = 372
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 132/297 (44%), Positives = 184/297 (61%)
Query: 17 SRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLP 76
SRVSPKTV+ AVKAL+K S+T+KPQLLE+D F YL++ LKKIPQ + TNA++IPLP
Sbjct: 2 SRVSPKTVDDAVKALVKEGNEKSRTEKPQLLEEDGFFYLVVALKKIPQRNFTNAYRIPLP 61
Query: 77 HSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPXXXXXXXXXXXXDYRPFEA 136
H L+ N +++ PE+CLI+DDRP+S LT++ K IK++N+P DY FE+
Sbjct: 62 HPLI-NTTEDSPELCLIIDDRPESGLTEEDAKKNIKSENIPITKVVKLSKLKSDYGSFES 120
Query: 137 KRKLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWKEQIEKVCGSALLY 196
KRKLCDSYD+F +D+RV+ +DLKH NWKEQIEK CG+A+ +
Sbjct: 121 KRKLCDSYDMFFSDRRVIPMLPKLIGKKFFQSKKTPVAIDLKHMNWKEQIEKACGAAMFF 180
Query: 197 LRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPV-YQAVPDLKLKI-EGVK--- 251
+RTG+CS +KV K+SM ++DI ENV A +NG+++ LP ++ + L LK+ E +
Sbjct: 181 MRTGSCSAIKVAKLSMESDDIVENVTATLNGVVD--VLPSRWKYIRSLHLKLSESLSLPL 238
Query: 252 -----------ENEGEGQDKDSEKENAEDVNDHGSXXXXXXXX-GRIHEVRYMDSTI 296
+ G + K+ E DV+D S G+IHEVRYMDS +
Sbjct: 239 YQTVPYLQLKIDPLGVEEVKNGEGLAKSDVDDSSSKSVKTKKKNGKIHEVRYMDSNV 295
>TAIR|locus:2202260 [details] [associations]
symbol:AT1G06380 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006412 "translation" evidence=IEA] [GO:0015934
"large ribosomal subunit" evidence=IEA] [GO:0009941 "chloroplast
envelope" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
InterPro:IPR002143 InterPro:IPR016094 InterPro:IPR023674
Pfam:PF00687 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006412
GO:GO:0009941 GO:GO:0003723 EMBL:AC068143 GO:GO:0003735
GO:GO:0015934 SUPFAM:SSF56808 Gene3D:3.30.190.20 KO:K14775
IPI:IPI00547803 PIR:F86199 RefSeq:NP_172126.1 UniGene:At.42343
ProteinModelPortal:Q9LMI1 STRING:Q9LMI1 PRIDE:Q9LMI1
EnsemblPlants:AT1G06380.1 GeneID:837149 KEGG:ath:AT1G06380
TAIR:At1g06380 eggNOG:NOG306589 HOGENOM:HOG000264992
InParanoid:Q9LMI1 OMA:ACESALF PhylomeDB:Q9LMI1
ProtClustDB:CLSN2914142 Genevestigator:Q9LMI1 Uniprot:Q9LMI1
Length = 254
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 105/242 (43%), Positives = 151/242 (62%)
Query: 17 SRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLP 76
S+V P+ V RAVK+LLKW S S+T+ + LE D FVYLI+TLK+IPQ+ RTN IPLP
Sbjct: 16 SKVDPQNVNRAVKSLLKWWDSKSKTENSESLENDGFVYLIVTLKRIPQLDRTNPLMIPLP 75
Query: 77 HSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPXXXXXXXXXXXXDYRPFEA 136
H L+ +++PPE+CLI+DD+ K+ +TK+A +KKI+ + +P D R E
Sbjct: 76 HPLIDLVAEDPPELCLIIDDKHKNKITKEAALKKIEAEKIPITTVIKVSKLKSDLRKLEE 135
Query: 137 KRKLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWKEQIEKVCGSALLY 196
+++ ++++ A++R++ ++L+H +WKEQIEK C SAL +
Sbjct: 136 EKR----FELYFAERRLMPMLPKLLGKEFVKKNKTPIAINLRHGSWKEQIEKACESALFF 191
Query: 197 LRTGTCSVLKVGKVSMGAEDIAENVIAAING------------------LLESLALPVYQ 238
+ TGTCSV+KV K+SMG +IAENV+AA+NG LLESLALPVYQ
Sbjct: 192 VGTGTCSVVKVAKLSMGRNEIAENVVAAMNGIGDLVPGRWKNVKLFHLKLLESLALPVYQ 251
Query: 239 AV 240
+V
Sbjct: 252 SV 253
>UNIPROTKB|F1N8V1 [details] [associations]
symbol:RSL1D1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0015934 "large ribosomal subunit"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0032880
"regulation of protein localization" evidence=IEA]
InterPro:IPR002143 InterPro:IPR016094 InterPro:IPR023674
Pfam:PF00687 GO:GO:0005730 GO:GO:0006412 GO:GO:0032880
GO:GO:0003723 GO:GO:0003735 GO:GO:0015934 SUPFAM:SSF56808
Gene3D:3.30.190.20 GeneTree:ENSGT00440000038603 EMBL:AADN02023930
IPI:IPI00581244 Ensembl:ENSGALT00000004530 OMA:VTNKGCC
Uniprot:F1N8V1
Length = 430
Score = 230 (86.0 bits), Expect = 7.2e-21, Sum P(2) = 7.2e-21
Identities = 60/214 (28%), Positives = 110/214 (51%)
Query: 24 VERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLLGND 83
V +AV+ALL + +S ++ LL +++ V+L++T+ KIP+V++ KIPLPH +
Sbjct: 4 VRKAVEALLAFARSKAKGDA-LLLNENESVHLLVTVWKIPRVAQV--IKIPLPHGIRAET 60
Query: 84 SDNPPEICLIMDDRPKSNLTK-DAVMKKIKNDN--LPXXXXXXXXXXXXDYRPFEAKRKL 140
+ E+CL D P + + +++ +K+ N +Y+PFEAKR+L
Sbjct: 61 A----EVCLFTKDEPDLSAEQTESLYRKLLTQNGITSVSQVISYKTLKKEYKPFEAKRRL 116
Query: 141 CDSYDIFLADKRVVXXXXXXXXXXXXXXXXXX-XXVDLKHQNWKEQIEK-VCGSALLYLR 198
+ +D+FL+D R+ V+LK +N ++++K + G+ L
Sbjct: 117 LNRFDLFLSDDRIRRLLPSHLGKHFYEKKNRAPLSVNLKAKNLAKELQKHIQGTVLPVTN 176
Query: 199 TGTCSVLKVGKVSMGAEDIAENVIAAINGLLESL 232
G C ++G M A++I +N+IAA + + L
Sbjct: 177 KGCCYTTRIGHTGMKADEILDNIIAAAEVIAKKL 210
Score = 40 (19.1 bits), Expect = 7.2e-21, Sum P(2) = 7.2e-21
Identities = 16/64 (25%), Positives = 27/64 (42%)
Query: 229 LESLALPVYQAVPDLKLKIEGVKE--NEGEGQDKDSEKENAEDVND-HGSXXXXXXXXGR 285
L+S+ALP++ A +I + E E + K K+ A+ VN +
Sbjct: 225 LKSVALPIFTA------RISNLDELDKEPNKEKKKKPKKAAKKVNSSQNTTTAKSKAAAA 278
Query: 286 IHEV 289
HE+
Sbjct: 279 THEL 282
>UNIPROTKB|J3QSV6 [details] [associations]
symbol:RSL1D1 "Ribosomal L1 domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0015934 "large
ribosomal subunit" evidence=IEA] InterPro:IPR002143
InterPro:IPR016094 InterPro:IPR023674 Pfam:PF00687 GO:GO:0006412
GO:GO:0003723 GO:GO:0003735 GO:GO:0015934 SUPFAM:SSF56808
Gene3D:3.30.190.20 HGNC:HGNC:24534 EMBL:AC010654
Ensembl:ENST00000355674 Uniprot:J3QSV6
Length = 430
Score = 229 (85.7 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 68/235 (28%), Positives = 113/235 (48%)
Query: 18 RVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPH 77
++ + V +AV ALL KS LL +++ ++L++ L KIP S+ ++ LPH
Sbjct: 30 QLDKEQVRKAVDALLTHCKSRKNNYG-LLLNENESLFLMVVLWKIP--SKELRVRLTLPH 86
Query: 78 SLLGNDSDNPPEICLIMDDRPKSNLTK-DAVMKKIKNDN--LPXXXXXXXXXXXXDYRPF 134
S+ +DS+ +ICL D P S K + +K+ N + +Y+ +
Sbjct: 87 SIR-SDSE---DICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSY 142
Query: 135 EAKRKLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWKEQIEKVCGSAL 194
EAK +L S+D FL D R+ V+L +N +I G +
Sbjct: 143 EAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDCIGGTV 202
Query: 195 LYL-RTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIE 248
L + ++G+CS +++G V M E I EN++A GL E L P +++V L +K E
Sbjct: 203 LNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKL--PEWESVKLLFVKTE 255
>UNIPROTKB|O76021 [details] [associations]
symbol:RSL1D1 "Ribosomal L1 domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0015934 "large
ribosomal subunit" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IMP] InterPro:IPR002143 InterPro:IPR016094
InterPro:IPR023674 Pfam:PF00687 GO:GO:0005730 GO:GO:0006412
GO:GO:0032880 GO:GO:0003723 EMBL:CH471112 GO:GO:0003735
GO:GO:0015934 SUPFAM:SSF56808 Gene3D:3.30.190.20 eggNOG:NOG247516
HOVERGEN:HBG054786 OMA:VLWKIPS OrthoDB:EOG4V9TQR EMBL:AJ007398
EMBL:AY598331 EMBL:AY154473 EMBL:BC019069 EMBL:BC112228
EMBL:BC113699 EMBL:AL049999 EMBL:AF083127 IPI:IPI00008708
PIR:T08693 RefSeq:NP_056474.2 UniGene:Hs.401842
ProteinModelPortal:O76021 SMR:O76021 IntAct:O76021
MINT:MINT-1139726 STRING:O76021 PhosphoSite:O76021
SWISS-2DPAGE:O76021 PaxDb:O76021 PRIDE:O76021 DNASU:26156
Ensembl:ENST00000571133 GeneID:26156 KEGG:hsa:26156 UCSC:uc002dbp.1
CTD:26156 GeneCards:GC16M011930 HGNC:HGNC:24534 HPA:HPA043483
neXtProt:NX_O76021 PharmGKB:PA142670966 InParanoid:O76021 KO:K14775
ChEMBL:CHEMBL1075139 GenomeRNAi:26156 NextBio:48251
ArrayExpress:O76021 Bgee:O76021 CleanEx:HS_RSL1D1
Genevestigator:O76021 GermOnline:ENSG00000171490 Uniprot:O76021
Length = 490
Score = 222 (83.2 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 67/235 (28%), Positives = 112/235 (47%)
Query: 18 RVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPH 77
++ + V +AV ALL KS LL +++ ++L++ L KIP S+ ++ LPH
Sbjct: 30 QLDKEQVRKAVDALLTHCKSRKNNYG-LLLNENESLFLMVVLWKIP--SKELRVRLTLPH 86
Query: 78 SLLGNDSDNPPEICLIMDDRPKSNLTK-DAVMKKIKNDN--LPXXXXXXXXXXXXDYRPF 134
S+ +DS+ +ICL D P S K + +K+ N + +Y+ +
Sbjct: 87 SIR-SDSE---DICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSY 142
Query: 135 EAKRKLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWKEQIEKVCGSAL 194
EAK +L S+D FL D R+ V+L +N +I G +
Sbjct: 143 EAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDCIGGTV 202
Query: 195 LYL-RTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIE 248
L + ++G+CS +++G V M E I EN++A GL E L +++V L +K E
Sbjct: 203 LNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKLP-EKWESVKLLFVKTE 256
>UNIPROTKB|I3LG73 [details] [associations]
symbol:RSL1D1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015934 "large ribosomal subunit" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR002143 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 Pfam:PF00687 GO:GO:0006412
GO:GO:0003723 GO:GO:0003735 GO:GO:0015934 SUPFAM:SSF56808
Gene3D:3.30.190.20 Gene3D:3.40.50.790 GeneTree:ENSGT00440000038603
OMA:VLWKIPS Ensembl:ENSSSCT00000023591 Uniprot:I3LG73
Length = 487
Score = 197 (74.4 bits), Expect = 4.5e-14, P = 4.5e-14
Identities = 65/238 (27%), Positives = 112/238 (47%)
Query: 18 RVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPH 77
+++ + +++AV+ LL KS L E ++F +L++ L KIP S+ ++ LPH
Sbjct: 28 QLNEEQIKKAVETLLAHSKSRKNANGLLLNENENF-FLMVVLWKIP--SKELRVRLSLPH 84
Query: 78 SLLGNDSDNPPEICLIMDDRPKSNLTKDAV---MKKIKNDN--LPXXXXXXXXXXXXDYR 132
+ + +D ICL D P NLT + KK+ N + +Y+
Sbjct: 85 GIRSDLTD----ICLFTKDEP--NLTPEQTERFYKKLLNKHGVKNISQIIPFRTLKKEYK 138
Query: 133 PFEAKRKLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWKEQIEKVCGS 192
+EAK +L S+D F+ D R+ V+L+ +N +I G
Sbjct: 139 AYEAKLRLLGSFDFFITDSRIRRLLPSHLGRHFYNRKKVPVSVNLQAKNLSREISDCVGG 198
Query: 193 ALLYL-RTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPV-YQAVPDLKLKIE 248
+L + ++G+CS +++G M + I ENV+A L S ALP +++V L +K E
Sbjct: 199 TVLNISKSGSCSTIRIGHTGMQVQHIVENVLAVAKRL--SQALPEKWESVKLLYVKTE 254
>UNIPROTKB|Q1PG84 [details] [associations]
symbol:Rsl1d1 "PBK1" species:10092 "Mus musculus
domesticus" [GO:0005515 "protein binding" evidence=IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0032880 "regulation of protein
localization" evidence=ISO] InterPro:IPR002143 InterPro:IPR016094
InterPro:IPR023674 Pfam:PF00687 MGI:MGI:1913659 GO:GO:0005730
GO:GO:0006412 GO:GO:0032880 GO:GO:0003723 GO:GO:0003735
GO:GO:0015934 SUPFAM:SSF56808 Gene3D:3.30.190.20 HOVERGEN:HBG054786
EMBL:DQ445383 UniGene:Mm.28291 Uniprot:Q1PG84
Length = 465
Score = 192 (72.6 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 59/228 (25%), Positives = 103/228 (45%)
Query: 24 VERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLLGND 83
+ +AV+ + K + LL + ++L++ L KIP+ + K+PLPHS+L
Sbjct: 49 IRKAVEVISNRSKPKKNNNE-LLLSGSENLFLMVILWKIPE--KELRVKVPLPHSILSES 105
Query: 84 SDNPPEICLIMDDRPKSNLTKDAVMKKI-KNDNLPXXXXXX-XXXXXXDYRPFEAKRKLC 141
SD +CL D S + KK+ K + +Y+ +EAK +L
Sbjct: 106 SD----VCLFTKDEFDSPEQTEGFYKKLLKKHGVNTISQIIPFKTLKTEYKAYEAKLRLL 161
Query: 142 DSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWKEQIEK-VCGSALLYLRTG 200
S+++F+ D R+ V+L +N ++I + + G+ L + G
Sbjct: 162 GSFEVFITDARIRRHLPSHIGRHFYQRKKVPVSVNLLAKNLSKEINRCITGTVLNISKRG 221
Query: 201 TCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIE 248
+CS +++G M E I +N++A L E L +Q+V L LK E
Sbjct: 222 SCSTIRIGHTGMETEHIVDNILAVSEMLSEKLP-EKWQSVKLLFLKTE 268
>UNIPROTKB|A4FV97 [details] [associations]
symbol:RSL1D1 "Ribosomal L1 domain-containing protein 1"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0015934 "large ribosomal subunit" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002143 InterPro:IPR016094 InterPro:IPR016095
InterPro:IPR023674 Pfam:PF00687 GO:GO:0005730 GO:GO:0006412
GO:GO:0032880 GO:GO:0003723 GO:GO:0003735 GO:GO:0015934
SUPFAM:SSF56808 Gene3D:3.30.190.20 Gene3D:3.40.50.790 EMBL:BC123897
IPI:IPI00710197 UniGene:Bt.4815 ProteinModelPortal:A4FV97
STRING:A4FV97 Ensembl:ENSBTAT00000019422 eggNOG:NOG247516
GeneTree:ENSGT00440000038603 HOGENOM:HOG000133021
HOVERGEN:HBG054786 InParanoid:A4FV97 OMA:VLWKIPS OrthoDB:EOG4V9TQR
Uniprot:A4FV97
Length = 482
Score = 192 (72.6 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 59/235 (25%), Positives = 107/235 (45%)
Query: 18 RVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPH 77
++ + V++AV+ALL +S L E ++F +L++ L KIP S+ ++ LPH
Sbjct: 28 QLDEEQVKKAVEALLAHSRSRKNANGLLLNENENF-FLMVVLWKIP--SKELRVRLSLPH 84
Query: 78 SLLGNDSDNPPEICLIMDDRPK--SNLTKDAVMKKIKNDNLPXXXXXX-XXXXXXDYRPF 134
+ + +D +CL D P S T+ K + N + +Y+ +
Sbjct: 85 GIRSDLAD----VCLFTKDEPNLSSEQTERYYKKLLNNHGIKTISQIIPFRTLKKEYKAY 140
Query: 135 EAKRKLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWKEQIEKVCGSAL 194
EAK +L S+D F+ D R+ V+L+ + +I G +
Sbjct: 141 EAKLRLLGSFDFFITDARIRRLLPSHLGRHFYNRKKVPVSVNLQSKTLSREINDCIGGTV 200
Query: 195 LYL-RTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIE 248
L + ++G+CS +++G M + I ENV+A L + L +++V L +K E
Sbjct: 201 LNISKSGSCSTIRIGHTGMPIQHIVENVVAVAKSLSQKLP-EKWESVKLLFVKTE 254
>UNIPROTKB|E2R7S5 [details] [associations]
symbol:RSL1D1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015934 "large ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR002143 InterPro:IPR016094
InterPro:IPR023674 Pfam:PF00687 GO:GO:0006412 GO:GO:0003723
GO:GO:0003735 GO:GO:0015934 SUPFAM:SSF56808 Gene3D:3.30.190.20
GeneTree:ENSGT00440000038603 OMA:VLWKIPS CTD:26156 KO:K14775
EMBL:AAEX03004522 RefSeq:XP_536972.2 Ensembl:ENSCAFT00000029942
GeneID:479847 KEGG:cfa:479847 Uniprot:E2R7S5
Length = 490
Score = 192 (72.6 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 64/231 (27%), Positives = 107/231 (46%)
Query: 24 VERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLLGND 83
+ +AV+ALL +S L E ++F +L++ L KIP S+ ++ LPH + +
Sbjct: 34 IRKAVEALLAHSRSRKNANGLLLNENENF-FLMVILWKIP--SKELRVRLALPHGIRSDL 90
Query: 84 SDNPPEICLIMDDRPKSNLTKDAV---MKKIKNDN--LPXXXXXXXXXXXXDYRPFEAKR 138
+D ICL+ D P NLT + KK+ N + +Y+ +EAK
Sbjct: 91 TD----ICLLTKDEP--NLTPENTERFYKKLLNKHGIKTISQIIPLRTLKKEYKAYEAKL 144
Query: 139 KLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWKEQIEKVCGSALLYL- 197
+L S+D FL D R+ V+L +N +I + G +L +
Sbjct: 145 RLLGSFDFFLTDARIRRLLPSHLGRHFYHRKKVPVPVNLLAKNLSREINECIGGTVLNIS 204
Query: 198 RTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIE 248
++G+CS ++VG M E I +N+IA L + L +++V L +K E
Sbjct: 205 KSGSCSTIRVGHTGMEVEHIVDNIIAVAKRLSQKLP-EKWESVKLLYVKTE 254
>ASPGD|ASPL0000008098 [details] [associations]
symbol:AN6698 species:162425 "Emericella nidulans"
[GO:0015934 "large ribosomal subunit" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR002143
InterPro:IPR016094 InterPro:IPR023674 Pfam:PF00687 GO:GO:0006412
GO:GO:0003723 EMBL:BN001301 GO:GO:0003735 EMBL:AACD01000112
OrthoDB:EOG4Q2HQC GO:GO:0015934 SUPFAM:SSF56808 Gene3D:3.30.190.20
eggNOG:NOG247516 KO:K14775 RefSeq:XP_664302.1
ProteinModelPortal:Q5AYD2 EnsemblFungi:CADANIAT00007484
GeneID:2870481 KEGG:ani:AN6698.2 HOGENOM:HOG000180881 OMA:WLASELW
Uniprot:Q5AYD2
Length = 402
Score = 126 (49.4 bits), Expect = 7.3e-11, Sum P(3) = 7.3e-11
Identities = 39/139 (28%), Positives = 64/139 (46%)
Query: 19 VSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKK-IPQVSRTNAFKIPLPH 77
+ K ER A K L ++ + ++ V+L+LT KK + +R KI +PH
Sbjct: 35 IKSKQSEREATAAKKTLIGDNDSDAEDTPIHNEAVWLVLTTKKHVVDKNRLKPGKISIPH 94
Query: 78 SLLGNDSDNPPEICLIMDDRPKS--NLTKDAVMKKIKNDNLPXXXXXXXXXXXXDYRPFE 135
SL ++ ICLI D +S N+ D + + + Y+ FE
Sbjct: 95 SL---NASPALSICLITADPQRSVKNIVSDPSFPEHLSSRIEKVIGYSKLKDR--YKSFE 149
Query: 136 AKRKLCDSYDIFLADKRVV 154
++R+L +D+FLAD R+V
Sbjct: 150 SRRQLLSEHDVFLADDRIV 168
Score = 84 (34.6 bits), Expect = 7.3e-11, Sum P(3) = 7.3e-11
Identities = 17/63 (26%), Positives = 34/63 (53%)
Query: 184 EQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDL 243
++IEK SA ++L T + ++VG + E ++EN+ A + GL + ++ + L
Sbjct: 230 KEIEKALNSAPVHLAPATTAAIRVGSSNFTPEQLSENIEAVVKGLTDKFVTKGWRNIKAL 289
Query: 244 KLK 246
+K
Sbjct: 290 HIK 292
Score = 41 (19.5 bits), Expect = 7.3e-11, Sum P(3) = 7.3e-11
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 246 KIEGVKENEG-EGQDKDSEKENAEDVNDHGS 275
+IEG E + EG +K S K+ D ++ S
Sbjct: 332 QIEGEGEQKLLEGSNKKSRKQKTADDDEEAS 362
>UNIPROTKB|I3L3U9 [details] [associations]
symbol:RSL1D1 "Ribosomal L1 domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0015934 "large
ribosomal subunit" evidence=IEA] InterPro:IPR002143
InterPro:IPR016094 InterPro:IPR023674 Pfam:PF00687 GO:GO:0006412
GO:GO:0003723 GO:GO:0003735 GO:GO:0015934 SUPFAM:SSF56808
Gene3D:3.30.190.20 HGNC:HGNC:24534 EMBL:AC010654
Ensembl:ENST00000573251 Bgee:I3L3U9 Uniprot:I3L3U9
Length = 296
Score = 142 (55.0 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 42/139 (30%), Positives = 70/139 (50%)
Query: 18 RVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPH 77
++ + V +AV ALL KS LL +++ ++L++ L KIP S+ ++ LPH
Sbjct: 30 QLDKEQVRKAVDALLTHCKSRKNNYG-LLLNENESLFLMVVLWKIP--SKELRVRLTLPH 86
Query: 78 SLLGNDSDNPPEICLIMDDRPKSNLTK-DAVMKKIKNDN--LPXXXXXXXXXXXXDYRPF 134
S+ +DS+ +ICL D P S K + +K+ N + +Y+ +
Sbjct: 87 SIR-SDSE---DICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSY 142
Query: 135 EAKRKLCDSYDIFLADKRV 153
EAK +L S+D FL D R+
Sbjct: 143 EAKLRLLSSFDFFLTDARI 161
Score = 65 (27.9 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 203 SVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIE 248
+ +++G V M E I EN++A GL E L +++V L +K E
Sbjct: 178 NAIRIGHVGMQIEHIIENIVAVTKGLSEKLP-EKWESVKLLFVKTE 222
>UNIPROTKB|I3L3C4 [details] [associations]
symbol:RSL1D1 "Ribosomal L1 domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0015934 "large
ribosomal subunit" evidence=IEA] InterPro:IPR002143
InterPro:IPR016095 InterPro:IPR023674 Pfam:PF00687 GO:GO:0006412
GO:GO:0003723 GO:GO:0003735 GO:GO:0015934 SUPFAM:SSF56808
Gene3D:3.40.50.790 HGNC:HGNC:24534 EMBL:AC010654
Ensembl:ENST00000571988 Bgee:I3L3C4 Uniprot:I3L3C4
Length = 158
Score = 141 (54.7 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 42/133 (31%), Positives = 67/133 (50%)
Query: 24 VERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLLGND 83
V +AV ALL KS LL +++ ++L++ L KIP S+ ++ LPHS+ +D
Sbjct: 2 VRKAVDALLTHCKSRKNNYG-LLLNENESLFLMVVLWKIP--SKELRVRLTLPHSIR-SD 57
Query: 84 SDNPPEICLIMDDRPKSNLTK-DAVMKKIKNDN--LPXXXXXXXXXXXXDYRPFEAKRKL 140
S+ +ICL D P S K + +K+ N + +Y+ +EAK +L
Sbjct: 58 SE---DICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSYEAKLRL 114
Query: 141 CDSYDIFLADKRV 153
S+D FL D R+
Sbjct: 115 LSSFDFFLTDARI 127
>RGD|1359295 [details] [associations]
symbol:Rsl1d1 "ribosomal L1 domain containing 1" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0015934 "large
ribosomal subunit" evidence=IEA] InterPro:IPR002143
InterPro:IPR016094 InterPro:IPR023674 Pfam:PF00687
InterPro:IPR001921 RGD:1359295 GO:GO:0005730 GO:GO:0006412
GO:GO:0032880 GO:GO:0003723 GO:GO:0003735 GO:GO:0015934
SUPFAM:SSF56808 eggNOG:COG1358 Gene3D:3.30.190.20
GeneTree:ENSGT00440000038603 OrthoDB:EOG4V9TQR CTD:26156 KO:K14775
PRINTS:PR00882 EMBL:AY310144 IPI:IPI00368458 RefSeq:NP_001008876.1
UniGene:Rn.154542 Ensembl:ENSRNOT00000044593 GeneID:302898
KEGG:rno:302898 UCSC:RGD:1359295 InParanoid:Q7TQ86 NextBio:650292
Genevestigator:Q7TQ86 Uniprot:Q7TQ86
Length = 540
Score = 152 (58.6 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 42/161 (26%), Positives = 71/161 (44%)
Query: 75 LPHSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKI-KNDNLPXXXXXX-XXXXXXDYR 132
LPHS+L S E+CL D S + KK+ K + +Y+
Sbjct: 54 LPHSILSESS----EVCLFTKDECDSPEQTEGFYKKLLKKHGVNTISQIIPFKTLKTEYK 109
Query: 133 PFEAKRKLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWKEQIEK-VCG 191
+EAK +L S+D+F+AD+R+ V+L +N ++I + + G
Sbjct: 110 AYEAKLRLLGSFDVFIADERIRRHLPTHIGRHFYQRKKVPVSVNLLAKNLSKEINRTITG 169
Query: 192 SALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESL 232
+ L + G+CS +++G M + I EN++ L E L
Sbjct: 170 TVLNISKRGSCSTIRIGHTGMEIQHIIENILTVSEMLSEKL 210
>POMBASE|SPAC8F11.04 [details] [associations]
symbol:SPAC8F11.04 "U3 snoRNP-associated protein
Cic1/Utp30 family (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO;IDA]
[GO:0006412 "translation" evidence=IEA] [GO:0015934 "large
ribosomal subunit" evidence=IEA] [GO:0030490 "maturation of
SSU-rRNA" evidence=ISO] InterPro:IPR002143 InterPro:IPR016095
InterPro:IPR023674 Pfam:PF00687 PomBase:SPAC8F11.04 EMBL:CU329670
GO:GO:0005730 GO:GO:0006412 GO:GO:0003723 GO:GO:0003735
GO:GO:0030490 OrthoDB:EOG4Q2HQC GO:GO:0015934 SUPFAM:SSF56808
Gene3D:3.40.50.790 eggNOG:NOG247516 KO:K14775 PIR:T39179
RefSeq:NP_593953.1 ProteinModelPortal:Q9UT32
EnsemblFungi:SPAC8F11.04.1 GeneID:2543438 KEGG:spo:SPAC8F11.04
OMA:IEKACGS NextBio:20804451 Uniprot:Q9UT32
Length = 373
Score = 135 (52.6 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 65/245 (26%), Positives = 110/245 (44%)
Query: 20 SPKTVERAVKALLKW---LKSN----SQTQKPQLLE--QDDF--VYLIL-TLKKIPQVSR 67
S +E+ ALL++ KS+ S+++K LLE QDD V+L L TLK I +
Sbjct: 9 SDAPLEKVCSALLEYESKRKSSENIDSESKKTNLLEDEQDDIEPVWLQLATLKFIGNNRK 68
Query: 68 TNAFKIPLPHSLLGNDSDNPPEICLIMDD--RPKSNLTKDAVMKKIKNDNLPXXXXXXXX 125
+KI + + ++ + S E CLI+ D R +L +A + K+
Sbjct: 69 LIPYKIAIKNPVIPSSS----EACLIVKDPQRVYKDLVNEAGLSKV------VTRVIGLS 118
Query: 126 XXXXDYRPFEAKRKLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWKEQ 185
+ +E KR+L D +DIFLAD RV+ V + + EQ
Sbjct: 119 KLKAKWNSYEQKRQLRDQFDIFLADDRVIPMLPRILGKTFYQKSKVPVPVKIS-KGTAEQ 177
Query: 186 IEKVCGSAL--LYLRTGTCS--VLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVP 241
+++ SA Y + CS ++K G VS + ++AENV + + + + + + +
Sbjct: 178 LKREVVSAYGATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFVSKHIVPDGAKGIA 237
Query: 242 DLKLK 246
+ LK
Sbjct: 238 SIHLK 242
>UNIPROTKB|I3L234 [details] [associations]
symbol:RSL1D1 "Ribosomal L1 domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0015934 "large
ribosomal subunit" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR002143 InterPro:IPR023674 Pfam:PF00687
GO:GO:0005730 GO:GO:0006412 GO:GO:0003723 GO:GO:0003735
GO:GO:0015934 SUPFAM:SSF56808 HGNC:HGNC:24534 EMBL:AC010654
Ensembl:ENST00000573791 Bgee:I3L234 Uniprot:I3L234
Length = 98
Score = 106 (42.4 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 31/101 (30%), Positives = 50/101 (49%)
Query: 56 ILTLKKIPQVSRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSNLTK-DAVMKKIKND 114
++ L KIP S+ ++ LPHS+ +DS+ +ICL D P S K + +K+ N
Sbjct: 1 MVVLWKIP--SKELRVRLTLPHSIR-SDSE---DICLFTKDEPNSTPEKTEQFYRKLLNK 54
Query: 115 N--LPXXXXXXXXXXXXDYRPFEAKRKLCDSYDIFLADKRV 153
+ +Y+ +EAK +L S+D FL D R+
Sbjct: 55 HGIKTVSQIISLQTLKKEYKSYEAKLRLLSSFDFFLTDARI 95
>POMBASE|SPCC306.07c [details] [associations]
symbol:SPCC306.07c "U3 snoRNP-associated protein
Cic1/Utp30 family (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=ISO;IDA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0015934 "large ribosomal subunit"
evidence=IEA] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=ISO] InterPro:IPR002143 InterPro:IPR016094
InterPro:IPR023674 Pfam:PF00687 PomBase:SPCC306.07c GO:GO:0005730
EMBL:CU329672 GO:GO:0006412 GO:GO:0003723 GO:GO:0003735
GO:GO:0042273 GO:GO:0006364 OrthoDB:EOG4Q2HQC GO:GO:0015934
SUPFAM:SSF56808 Gene3D:3.30.190.20 eggNOG:NOG247516 PIR:T41285
RefSeq:NP_587815.1 ProteinModelPortal:Q9Y7R7
EnsemblFungi:SPCC306.07c.1 GeneID:2538926 KEGG:spo:SPCC306.07c
NextBio:20800103 Uniprot:Q9Y7R7
Length = 284
Score = 121 (47.7 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 47/231 (20%), Positives = 98/231 (42%)
Query: 18 RVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPH 77
++ K +E+ ++ALL+ ++S+ KP +E++ + T + + + S K+ LPH
Sbjct: 16 KIDIKLLEKTIRALLQHIRSSD---KP--IEKEKVYIQVNTFQPVEKESLRRPSKVFLPH 70
Query: 78 SLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPXXXXXXXXXXXXDYRPFEAK 137
++ + + CLI+ D S T ++++ D + Y+ K
Sbjct: 71 RIM-----HVTDACLIVKD---SQQTYQDLVEQQGLDEV-ITKVLSIPRLKLKYKTIREK 121
Query: 138 RKLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDL--KHQNWKEQIEKVCGSALL 195
+L DS+++FL D RV+ + + K + + Q+ + S L
Sbjct: 122 CELRDSHNLFLVDDRVLKYIPLLMGKVFEQKKIKPFPISVLQKKETLRNQVARCLHSTYL 181
Query: 196 YLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLK 246
L GT + G + E + EN+ + LL + + A+ ++ +K
Sbjct: 182 KLSAGTSHTILCGLATQTNEQLLENITTVLKCLLTNFIPKGWSAIDNVAIK 232
>FB|FBgn0032050 [details] [associations]
symbol:CG13096 species:7227 "Drosophila melanogaster"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA]
InterPro:IPR002143 InterPro:IPR016094 InterPro:IPR023674
Pfam:PF00687 EMBL:AE014134 GO:GO:0006412 GO:GO:0003723
GO:GO:0003735 GO:GO:0015934 SUPFAM:SSF56808 Gene3D:3.30.190.20
eggNOG:NOG247516 GeneTree:ENSGT00440000038603 KO:K14775
EMBL:AY069795 RefSeq:NP_609236.2 UniGene:Dm.358
ProteinModelPortal:Q9VLK2 SMR:Q9VLK2 MINT:MINT-1333691
STRING:Q9VLK2 PaxDb:Q9VLK2 PRIDE:Q9VLK2 EnsemblMetazoa:FBtr0079698
GeneID:34183 KEGG:dme:Dmel_CG13096 UCSC:CG13096-RA
FlyBase:FBgn0032050 InParanoid:Q9VLK2 OMA:SYKIPSC OrthoDB:EOG4K98V4
PhylomeDB:Q9VLK2 ChiTaRS:CG13096 GenomeRNAi:34183 NextBio:787285
Bgee:Q9VLK2 Uniprot:Q9VLK2
Length = 681
Score = 111 (44.1 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 53/213 (24%), Positives = 79/213 (37%)
Query: 28 VKALLKWLKSNSQTQKPQLLEQDDFVYLILTLK-KIPQVSRTNAFKIPLPHSLLGNDSDN 86
V A LK + S +K D+ Y++ KIP + K+ L HSL+G D D
Sbjct: 277 VCAALKSVVSEEVEKKKNTSIFSDYRYVLQVCSYKIPSCPK-RMVKLNLKHSLVGKDDD- 334
Query: 87 PPEICLIMDDRPKS-----NLTKDAVMKKIKNDNLPXXXXXX-XXXXXXDYRPFEAKRKL 140
+ LI+ D + + TK ++ + + FEAKRK
Sbjct: 335 ---VALIVPDLQRGAKFDYDPTKQHYEDMLREAGVKQRLTVVPFNQLRNEMGSFEAKRKF 391
Query: 141 CDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWK---EQIEKVCGSALLYL 197
+SYD L D R+ + L N K E + +A L
Sbjct: 392 LNSYDYLLCDGRLSGQATAFLGKNTQKPRNVLHSLRLSKDNDKLPQEVTRALTRTAFRQL 451
Query: 198 RTGTCSVLKVGKVSMGAEDIAENVIAAINGLLE 230
G + VG + AE +AEN++ I L E
Sbjct: 452 SKGDLIAVPVGNHEITAEQLAENILLVIKQLQE 484
Score = 49 (22.3 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 239 AVPDLKLKIEGVKENEGEGQDKDSEKENAEDVND 272
A D + ++E +++ GE D+D E + +D ++
Sbjct: 610 AESDEEEEVEEAEDSAGESGDEDEEGHDGDDTDE 643
Score = 47 (21.6 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 239 AVPDLKLKIEGVKENEGEGQDKDSEKENAEDVND 272
AVP K + KE+ EG D+E + E+V +
Sbjct: 591 AVPAKKAR----KESSSEGAKADAESDEEEEVEE 620
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.132 0.371 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 413 275 0.00079 115 3 11 23 0.43 34
33 0.40 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 600 (64 KB)
Total size of DFA: 192 KB (2110 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.36u 0.10s 22.46t Elapsed: 00:00:01
Total cpu time: 22.37u 0.10s 22.47t Elapsed: 00:00:01
Start: Fri May 10 04:00:18 2013 End: Fri May 10 04:00:19 2013