BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015100
(413 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RCE6|RL1D1_PONAB Ribosomal L1 domain-containing protein 1 OS=Pongo abelii GN=RSL1D1
PE=2 SV=2
Length = 490
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 117/418 (27%), Positives = 200/418 (47%), Gaps = 44/418 (10%)
Query: 13 PSAGSRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFK 72
P+A ++ + V +AV ALL KS LL +++ ++L++ L KIP S+ +
Sbjct: 25 PTARKQLDKEQVRKAVDALLTHCKSRKNNYG-LLLNENESLFLMVVLWKIP--SKELRVR 81
Query: 73 IPLPHSLLGNDSDNPPEICLIMDDRPKSNLTK-DAVMKKIKNDN--LPITKVIKITKLKT 129
+ LPHS+ + D ICL D P S K + +K+ N + ++++I + LK
Sbjct: 82 LTLPHSIRSDSED----ICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKK 137
Query: 130 DYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKV 189
+Y+ +EAK +L S+D FL D R+ LLP L+G+HF+++KK+PV V+L +N +I
Sbjct: 138 EYKSYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDC 197
Query: 190 CGSALLYL-RTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIE 248
G +L + ++G+CS +++G V M E I EN++A GL E L +++V L +K E
Sbjct: 198 IGGTVLNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKLP-EKWESVKLLFVKTE 256
Query: 249 ---------GVKENEGEGQDKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEV 299
N E + + ++ ++ +K+K R + + T V
Sbjct: 257 KSAALPIFSSFVSNWDEATKRSLLNKKKKEARRKRRERNFEKQKERKKKRQQARKT-ASV 315
Query: 300 LDEDELGSDDDGEGDV--GESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKKV--- 354
L +D++ + G+ V ES+ + E GK G GK + K E ++P+ V
Sbjct: 316 LSKDDVA-PESGDTTVKKPESKKEQTPEHGKKKRGR--GKAQVKATNESEDEIPQLVPIG 372
Query: 355 --------------AKVKKDELSSDMKNEDVGKQKKQKKVGLSLKNDEEKSSGKEKKK 398
A KK S + GK++K + K E ++ GK +K
Sbjct: 373 KKTPANEKVEIQKHATGKKSPAKSPNPSTPRGKKRKALPASETPKAAESETPGKSPEK 430
>sp|O76021|RL1D1_HUMAN Ribosomal L1 domain-containing protein 1 OS=Homo sapiens GN=RSL1D1
PE=1 SV=3
Length = 490
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 117/418 (27%), Positives = 200/418 (47%), Gaps = 44/418 (10%)
Query: 13 PSAGSRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFK 72
P+A ++ + V +AV ALL KS LL +++ ++L++ L KIP S+ +
Sbjct: 25 PTARKQLDKEQVRKAVDALLTHCKSRKNNYG-LLLNENESLFLMVVLWKIP--SKELRVR 81
Query: 73 IPLPHSLLGNDSDNPPEICLIMDDRPKSNLTK-DAVMKKIKNDN--LPITKVIKITKLKT 129
+ LPHS+ + D ICL D P S K + +K+ N + ++++I + LK
Sbjct: 82 LTLPHSIRSDSED----ICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKK 137
Query: 130 DYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKV 189
+Y+ +EAK +L S+D FL D R+ LLP L+G+HF+++KK+PV V+L +N +I
Sbjct: 138 EYKSYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDC 197
Query: 190 CGSALLYL-RTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIE 248
G +L + ++G+CS +++G V M E I EN++A GL E L +++V L +K E
Sbjct: 198 IGGTVLNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKLP-EKWESVKLLFVKTE 256
Query: 249 ---------GVKENEGEGQDKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEV 299
N E + + ++ ++ +K+K R + + T V
Sbjct: 257 KSAALPIFSSFVSNWDEATKRSLLNKKKKEARRKRRERNFEKQKERKKKRQQARKT-ASV 315
Query: 300 LDEDELGSDDDGEGDV--GESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKKV--- 354
L +D++ + G+ V ES+ + E GK G GK + K E ++P+ V
Sbjct: 316 LSKDDVA-PESGDTTVKKPESKKEQTPEHGKKKRGR--GKAQVKATNESEDEIPQLVPIG 372
Query: 355 --------------AKVKKDELSSDMKNEDVGKQKKQKKVGLSLKNDEEKSSGKEKKK 398
A KK S + GK++K + K E ++ GK +K
Sbjct: 373 KKTPANEKVEIQKHATGKKSPAKSPNPSTPRGKKRKALPASETPKAAESETPGKSPEK 430
>sp|A4FV97|RL1D1_BOVIN Ribosomal L1 domain-containing protein 1 OS=Bos taurus GN=RSL1D1
PE=2 SV=1
Length = 482
Score = 118 bits (296), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 120/213 (56%), Gaps = 11/213 (5%)
Query: 24 VERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLLGND 83
V++AV+ALL +S L E ++F +L++ L KIP S+ ++ LPH + +
Sbjct: 34 VKKAVEALLAHSRSRKNANGLLLNENENF-FLMVVLWKIP--SKELRVRLSLPHGIRSDL 90
Query: 84 SDNPPEICLIMDDRPK-SNLTKDAVMKKIKNDN--LPITKVIKITKLKTDYRPFEAKRKL 140
+D +CL D P S+ + KK+ N++ I+++I LK +Y+ +EAK +L
Sbjct: 91 AD----VCLFTKDEPNLSSEQTERYYKKLLNNHGIKTISQIIPFRTLKKEYKAYEAKLRL 146
Query: 141 CDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYL-RT 199
S+D F+ D R+ LLP LG+HF+ +KK+PV V+L+ + +I G +L + ++
Sbjct: 147 LGSFDFFITDARIRRLLPSHLGRHFYNRKKVPVSVNLQSKTLSREINDCIGGTVLNISKS 206
Query: 200 GTCSVLKVGKVSMGAEDIAENVIAAINGLLESL 232
G+CS +++G M + I ENV+A L + L
Sbjct: 207 GSCSTIRIGHTGMPIQHIVENVVAVAKSLSQKL 239
>sp|Q9UT32|RL1DB_SCHPO Putative ribosome biogenesis protein C8F11.04
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC8F11.04 PE=3 SV=1
Length = 373
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 132/237 (55%), Gaps = 42/237 (17%)
Query: 38 NSQTQKPQLLE--QDDF--VYLIL-TLKKIPQVSRTNAFKIPLPHSLLGNDSDNPPEICL 92
+S+++K LLE QDD V+L L TLK I + +KI + + ++ + S E CL
Sbjct: 34 DSESKKTNLLEDEQDDIEPVWLQLATLKFIGNNRKLIPYKIAIKNPVIPSSS----EACL 89
Query: 93 IMDD--RPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLAD 150
I+ D R +L +A + K+ +T+VI ++KLK + +E KR+L D +DIFLAD
Sbjct: 90 IVKDPQRVYKDLVNEAGLSKV------VTRVIGLSKLKAKWNSYEQKRQLRDQFDIFLAD 143
Query: 151 KRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQI--EKVCGSALLYLRTGTCS--VLK 206
RV+P+LP++LGK F++K K+PVPV + + EQ+ E V Y + CS ++K
Sbjct: 144 DRVIPMLPRILGKTFYQKSKVPVPVKI-SKGTAEQLKREVVSAYGATYFNSAPCSSFMIK 202
Query: 207 VGKVSMGAEDIAENV------------------IAAIN-GLLESLALPVYQAVPDLK 244
G VS + ++AENV IA+I+ +S+A+P++ P+LK
Sbjct: 203 CGHVSNTSTELAENVESILQFVSKHIVPDGAKGIASIHLKTSQSIAIPLWNN-PNLK 258
>sp|Q9Y7R7|RL1DA_SCHPO Putative ribosome biogenesis protein C306.07c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC306.07c PE=3 SV=1
Length = 284
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 119/231 (51%), Gaps = 16/231 (6%)
Query: 18 RVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPH 77
++ K +E+ ++ALL+ ++S + KP +E++ + T + + + S K+ LPH
Sbjct: 16 KIDIKLLEKTIRALLQHIRS---SDKP--IEKEKVYIQVNTFQPVEKESLRRPSKVFLPH 70
Query: 78 SLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAK 137
++ + + CLI+ D S T ++++ D + ITKV+ I +LK Y+ K
Sbjct: 71 RIM-----HVTDACLIVKD---SQQTYQDLVEQQGLDEV-ITKVLSIPRLKLKYKTIREK 121
Query: 138 RKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDL--KHQNWKEQIEKVCGSALL 195
+L DS+++FL D RV+ +P L+GK F +KK P P+ + K + + Q+ + S L
Sbjct: 122 CELRDSHNLFLVDDRVLKYIPLLMGKVFEQKKIKPFPISVLQKKETLRNQVARCLHSTYL 181
Query: 196 YLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLK 246
L GT + G + E + EN+ + LL + + A+ ++ +K
Sbjct: 182 KLSAGTSHTILCGLATQTNEQLLENITTVLKCLLTNFIPKGWSAIDNVAIK 232
>sp|Q9VLK2|Y3096_DROME Ribosomal L1 domain-containing protein CG13096 OS=Drosophila
melanogaster GN=CG13096 PE=1 SV=1
Length = 681
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 83/193 (43%), Gaps = 21/193 (10%)
Query: 51 DFVYLI-LTLKKIPQVSRTNAFKIPLPHSLLGNDSDNPPEICLIMDDR---------PKS 100
D+ Y++ + KIP + K+ L HSL+G D D + LI+ D P
Sbjct: 300 DYRYVLQVCSYKIPSCPK-RMVKLNLKHSLVGKDDD----VALIVPDLQRGAKFDYDPTK 354
Query: 101 NLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKL 160
+D + + L V+ +L+ + FEAKRK +SYD L D R+
Sbjct: 355 QHYEDMLREAGVKQRL---TVVPFNQLRNEMGSFEAKRKFLNSYDYLLCDGRLSGQATAF 411
Query: 161 LGKHFFKKKKIPVPVDLKHQNWK---EQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDI 217
LGK+ K + + + L N K E + +A L G + VG + AE +
Sbjct: 412 LGKNTQKPRNVLHSLRLSKDNDKLPQEVTRALTRTAFRQLSKGDLIAVPVGNHEITAEQL 471
Query: 218 AENVIAAINGLLE 230
AEN++ I L E
Sbjct: 472 AENILLVIKQLQE 484
>sp|Q9UWR8|RL1_PYRAB 50S ribosomal protein L1P OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rpl1p PE=3 SV=1
Length = 219
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%)
Query: 138 RKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYL 197
RKL YD F+A+ ++P + + LGK+ + K+PV V N + +EK+ + + L
Sbjct: 101 RKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQL 160
Query: 198 RTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESL 232
+ VG M E+IAEN+ +N ++ L
Sbjct: 161 KNNPVVHAPVGTEKMSDEEIAENIETVLNAIIGKL 195
>sp|O57782|RL1_PYRHO 50S ribosomal protein L1P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl1p PE=3 SV=1
Length = 219
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%)
Query: 138 RKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYL 197
RKL YD F+A+ ++P + + LG++ + K+PV V N + +EK+ + + L
Sbjct: 101 RKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTMTNIEPIVEKLKKTVRIQL 160
Query: 198 RTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESL 232
+ VG M E +AEN+ A +N ++ L
Sbjct: 161 KDNPVVHAPVGTEKMSDEQLAENIEAVLNAIIGKL 195
>sp|Q8TZJ9|RL1_PYRFU 50S ribosomal protein L1P OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rpl1p PE=1 SV=1
Length = 216
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%)
Query: 138 RKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYL 197
RKL YD F+A+ ++P + + LG++ + K+PV V + +EK+ + + L
Sbjct: 98 RKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTLTDLTPIVEKLKKTVRIQL 157
Query: 198 RTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESL 232
+ VG M E+IAEN+ A +N ++ L
Sbjct: 158 KNNPVVHAPVGTEKMSDEEIAENIEAVLNAIIGKL 192
>sp|P53028|RL10A_TRYBR 60S ribosomal protein L10a OS=Trypanosoma brucei rhodesiense
GN=RPL10A PE=2 SV=1
Length = 214
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 140 LCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRT 199
+C+ YD FL + ++ +P+L+G H + K P V ++++ +++ ++ + L+
Sbjct: 100 MCNQYDAFLCSESIIKTVPRLVGPHMHRVGKFPT-VCAQNESLPDKVLELQSTVKFQLKK 158
Query: 200 GTCSVLKVGKVSMGAEDIAENVIAAINGLLESL 232
C VG V M + + +NV+ AIN L+ L
Sbjct: 159 VLCLGTCVGHVDMTEDQVRQNVVMAINFLVSLL 191
>sp|A2STT9|RL1_METLZ 50S ribosomal protein L1P OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=rpl1p PE=3 SV=1
Length = 213
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 133 PFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGS 192
P EA RK+ YD FLA+ V+PL+ + LG+ + K+P P+ Q+ +E++ S
Sbjct: 93 PREA-RKMAGQYDFFLAETAVMPLVGRWLGQRLGPRGKMPQPIP-PTQDITPIVERLRNS 150
Query: 193 ALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAIN---GLLES 231
+ + +KVG M E+++EN+ A + G LES
Sbjct: 151 VKIRSKDRLNMSVKVGNTGMTVEEVSENIDAVVKRVVGRLES 192
>sp|A0B922|RL1_METTP 50S ribosomal protein L1P OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rpl1p PE=3 SV=1
Length = 212
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 138 RKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYL 197
RKL D YD F+A+ + +P++ K LG K+ K+P P+ + + + I ++ +
Sbjct: 96 RKLADEYDFFIAETQFMPVIGKTLGPILGKRGKMPTPLP-PNADVAQMISRLKNIVRIRS 154
Query: 198 RTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESL 232
R + VG+ M A +AEN+ + I L ++L
Sbjct: 155 RDRPTFHIAVGRRDMDARQLAENIESVITKLEQTL 189
>sp|Q5JH35|RL1_PYRKO 50S ribosomal protein L1P OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rpl1p PE=3 SV=1
Length = 216
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%)
Query: 138 RKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYL 197
RKL YD F+A ++P + + LG++ + K+PV V N + +EK+ + + L
Sbjct: 98 RKLAKKYDFFIAAAPLMPKIGRYLGRYLGPRNKMPVVVPPTMTNLEPIVEKLKKTVRIQL 157
Query: 198 RTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESL 232
+ +G M E +AEN A +N ++ L
Sbjct: 158 KNNPVVHAPIGTEDMDDEKLAENAEAVLNAIINKL 192
>sp|Q9VTP4|R10AB_DROME 60S ribosomal protein L10a-2 OS=Drosophila melanogaster GN=RpL10Ab
PE=2 SV=2
Length = 217
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 143 SYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQ-NWKEQIEKVCGSALLYLRTGT 201
SYD FLA + ++ +P+LLG K K P L HQ + +IE+V + ++
Sbjct: 106 SYDAFLASESLIKQIPRLLGPGLNKAGKFPAL--LSHQESMIGKIEEVKSTIKFQMKKVL 163
Query: 202 CSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLK 246
C + VG V M ++++A+NV +IN L SL +Q V L +K
Sbjct: 164 CLSVAVGHVGMKSDELAQNVNLSIN-FLVSLLKKNWQNVRSLHVK 207
>sp|Q2FQ32|RL1_METHJ 50S ribosomal protein L1P OS=Methanospirillum hungatei (strain JF-1
/ DSM 864) GN=rpl1p PE=3 SV=1
Length = 215
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 133 PFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGS 192
P EA RK+ + FLA+ +V+ L+ + LG + ++P P+ + + +E++ S
Sbjct: 94 PREA-RKIASEHQFFLAETQVMSLVGRWLGPRLGPRGRMPQPIP-AGTDIRPIVERLRKS 151
Query: 193 ALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQA 239
+ + LKVG +M E+IAEN+ A + +L L + +Q
Sbjct: 152 VKIRTKDKMSFSLKVGTTAMSEEEIAENIDAVLKRILSKLEMGDFQV 198
>sp|Q7RZS0|RL10A_NEUCR 60S ribosomal protein L10a OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rpl-10a PE=3 SV=1
Length = 217
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
YD F+A + ++ +P+LLG K K P PV + ++ +V + L+ C
Sbjct: 107 YDAFVASEALIKQIPRLLGPGLSKAGKFPTPVS-HSDDLTGKLNEVKSTIKFQLKKVLCM 165
Query: 204 VLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLK 246
+ VG V M E + N++ AIN L+ SL +Q V L +K
Sbjct: 166 GVAVGNVGMTQEQLVGNIMLAINYLV-SLLKKGWQNVGSLTIK 207
>sp|O14363|RL1A_SCHPO 60S ribosomal protein L1-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl1a PE=1 SV=1
Length = 216
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
YD F+A + ++ +P+LLG K K P PV + + IE V + L+ C
Sbjct: 106 YDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIE-VKSTIKFQLKKVLCL 164
Query: 204 VLKVGKVSMGAEDIAENVIAAINGLLESL 232
+ VG V M E +A N+ AIN L+ L
Sbjct: 165 GVAVGHVDMAEEQLAANLSLAINFLVSLL 193
>sp|Q963B6|RL10A_SPOFR 60S ribosomal protein L10a OS=Spodoptera frugiperda GN=RpL10A PE=2
SV=1
Length = 217
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQ-NWKEQIEKVCGSALLYLRTGTC 202
YD FLA + ++ +P+LLG K K P L HQ + ++I++V + ++ C
Sbjct: 107 YDAFLASESLIKQIPRLLGPGLNKAGKFPGL--LSHQESMTQKIDEVKATIKFQMKKVLC 164
Query: 203 SVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLK 246
+ VG V M +++A+NV +IN L+ SL +Q V L +K
Sbjct: 165 LSVAVGHVDMTPDELAQNVHLSINFLV-SLLKKHWQNVRSLHMK 207
>sp|Q9SW75|RL10A_CHLRE 60S ribosomal protein L10a OS=Chlamydomonas reinhardtii GN=RPL10A
PE=2 SV=1
Length = 213
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 143 SYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTC 202
+Y FLA V+ +P+LLG K K P P++ +N +E + S L+ C
Sbjct: 104 AYHAFLASDSVIKQIPRLLGPGLNKAGKFPAPIN---KNLEEMVLDTKCSIKFQLKKVLC 160
Query: 203 SVLKVGKVSMGAEDIAENVIAAINGLLESL 232
+ V V M +I N++ AIN L+ L
Sbjct: 161 MGVAVANVGMTEGEIRTNIMYAINFLVSLL 190
>sp|O52704|RL1_METTL 50S ribosomal protein L1P OS=Methanococcus thermolithotrophicus
GN=rpl1p PE=1 SV=1
Length = 213
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 138 RKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYL 197
+K+ + +D F+A ++PL+ K LG + K+P PV + N +E++ + L+
Sbjct: 96 KKIANEHDFFIAQADMMPLVGKTLGPVLGPRGKMPQPVP-ANANLTPLVERLKKTVLINT 154
Query: 198 RTGTCSVLKVGKVSMGAEDIAENVIAAIN 226
R + VG M E++AEN+ A +N
Sbjct: 155 RDKPLFHVLVGNEKMSDEELAENIEAILN 183
>sp|P38779|CIC1_YEAST Proteasome-interacting protein CIC1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CIC1 PE=1 SV=1
Length = 376
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 90 ICLIMDDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLA 149
+ LI+ D +++D + ++ ++ + + ++I LKT Y+ +EA+ + + LA
Sbjct: 123 VLLILKDSDIKKVSEDDLFDQLDSEGIKVDEIICGKDLKTVYKAYEARNAFISQFSLILA 182
Query: 150 DKRVVPLLPKLL-GKHFFKKKKIPVPV 175
D +V LPKL+ GK + K + P+ +
Sbjct: 183 DDSIVTSLPKLMGGKAYNKVETTPISI 209
>sp|Q4R5P3|RL10A_MACFA 60S ribosomal protein L10a OS=Macaca fascicularis GN=RPL10A PE=2
SV=3
Length = 217
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
YD FLA + ++ +P++LG K K P P+ ++N ++++V + ++ C
Sbjct: 107 YDAFLASESLIKQIPRILGPGLNKAGKFPSPLT-HNENMVAKVDEVKSTIKFQMKRVLCL 165
Query: 204 VLKVGKVSMGAEDIAENVIAAINGLLESL 232
+ VG V M +++ N+ A+N L+ L
Sbjct: 166 AVAVGHVKMTDDELVYNIHLAVNFLVSLL 194
>sp|O74836|RL1B_SCHPO 60S ribosomal protein L1-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl1b PE=1 SV=1
Length = 216
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
YD F+A + ++ +P+LLG K K P PV + +I +V + L+ C
Sbjct: 106 YDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVS-HADDLYGKITEVKSTIKFQLKKVLCL 164
Query: 204 VLKVGKVSMGAEDIAENVIAAINGLLESL 232
+ VG V M E + N++ A+N L+ L
Sbjct: 165 GVAVGHVEMSEEQLIANIMLAVNFLVSLL 193
>sp|Q86L05|RL10A_DICDI 60S ribosomal protein L10a OS=Dictyostelium discoideum GN=rpl10a
PE=1 SV=1
Length = 217
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKH-QNWKEQIEKVCGSALLYLRTGTC 202
YD FLA + ++ +PKLLG K K P L H ++ +I V + L+ C
Sbjct: 107 YDAFLASESILRQVPKLLGPGLNKVGKFPTL--LTHSEDMASKINDVKSTVKFQLKKVLC 164
Query: 203 SVLKVGKVSMGAEDIAENVIAAINGLLESL 232
+ VG + + ++A N+I +IN L+ L
Sbjct: 165 LAVAVGHIELTEREVATNIIQSINFLVSLL 194
>sp|Q6PC69|RL10A_DANRE 60S ribosomal protein L10a OS=Danio rerio GN=rpl10a PE=2 SV=1
Length = 216
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
YD FLA + ++ +P++LG K K P + ++N ++++V + ++ C
Sbjct: 106 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLT-HNENLGTKVDEVKSTIKFQMKKVLCL 164
Query: 204 VLKVGKVSMGAEDIAENVIAAINGLLESL 232
+ VG V M E++ N+ A+N L+ L
Sbjct: 165 AVAVGHVKMSEEELVYNIHLAVNFLVSLL 193
>sp|P59230|R10A2_ARATH 60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB
PE=2 SV=1
Length = 216
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 143 SYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQ-NWKEQIEKVCGSALLYLRTGT 201
SY FLA + V+ +P+LLG K K P V HQ + + ++ + + L+
Sbjct: 105 SYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVS--HQESLEAKVNETKATVKFQLKKVL 162
Query: 202 CSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLK 246
C + VG +SM + + +NV ++N L+ SL +Q V L LK
Sbjct: 163 CMGVAVGNLSMEEKQLFQNVQMSVNFLV-SLLKKNWQNVRCLYLK 206
>sp|Q90YV8|RL10A_ICTPU 60S ribosomal protein L10a OS=Ictalurus punctatus GN=rpl10a PE=2
SV=1
Length = 216
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
YD FLA + ++ +P++LG K K P + ++N ++++V + ++ C
Sbjct: 106 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLT-HNENLNTKVDEVKSTIKFQMKKVLCL 164
Query: 204 VLKVGKVSMGAEDIAENVIAAINGLLESL 232
+ VG V M +++ N+ A+N L+ L
Sbjct: 165 AVAVGHVRMSEDELVYNIHLAVNFLVSLL 193
>sp|Q8VZB9|R10A1_ARATH 60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA
PE=2 SV=1
Length = 216
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQ-NWKEQIEKVCGSALLYLRTGTC 202
Y FLA + V+ +P+LLG K K P V HQ + + ++ + + L+ C
Sbjct: 106 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVS--HQESLESKVNETKATVKFQLKKVLC 163
Query: 203 SVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLK 246
+ VG +SM + I +NV ++N L+ SL +Q V L LK
Sbjct: 164 MGVAVGNLSMEEKQIFQNVQMSVNFLV-SLLKKNWQNVRCLYLK 206
>sp|Q9N4I4|RL10A_CAEEL 60S ribosomal protein L10a OS=Caenorhabditis elegans GN=rpl-10a
PE=2 SV=1
Length = 216
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 143 SYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTC 202
SYD F+A + ++ +P++LG K K P V ++ + + +++ + ++ C
Sbjct: 105 SYDAFIASESLIKQIPRILGPGLNKAGKFPSVVT-HGESLQSKSDEIRATVKFQMKKVLC 163
Query: 203 SVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLK 246
+ VG V + E++ N+ +IN L SL +Q V L +K
Sbjct: 164 LSVAVGHVGLTQEELVSNISLSIN-FLVSLLKKNWQNVRSLNIK 206
>sp|Q755D9|RL10A_ASHGO 60S ribosomal protein L10a OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPL10A PE=3
SV=1
Length = 217
Score = 39.7 bits (91), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
Y+ F+A + ++ +P+LLG K K P PV + + ++ V + L+ C
Sbjct: 107 YNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVS-HNDDLYSKVTDVRSTIKFQLKKVLCL 165
Query: 204 VLKVGKVSMGAEDIAENVIAAINGLLESL 232
+ VG V M + + ++ ++N L+ L
Sbjct: 166 AVAVGNVEMDEDTLVNQILMSVNFLVSLL 194
>sp|P36144|RL1D1_YEAST Ribosome biogenesis protein UTP30 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UTP30 PE=1 SV=1
Length = 274
Score = 39.7 bits (91), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 34/224 (15%)
Query: 25 ERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKI-PLPHSLLGND 83
E+A+KAL+ + N L+ D +++I+ K ++R N +I PL L
Sbjct: 14 EKALKALILQCEENPS------LKNDKDIHIIINTGKKMGINRDNIPRIIPLTKYKLFK- 66
Query: 84 SDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKR--KLC 141
P ++ +++ + S L ++ + K L ++I + L+ R F+ + +L
Sbjct: 67 ---PRDLNILLITKDPSALYRETLTKDEHTSEL-FKEIISVKNLR---RRFKGSKLTQLY 119
Query: 142 DSYDIFLADKRVVPLLPKLLGKHFFK-KKKIPV------PVDLKHQNWKE---------Q 185
+D+ +AD RV LLP++LG F+ KK+P V LK Q E Q
Sbjct: 120 KDFDLVVADYRVHHLLPEVLGSRFYHGSKKLPYMIRMSKEVKLKRQQMVEKCDPIYVRAQ 179
Query: 186 IEKVCGSALLYLRTGTCSVLKVGKVS-MGAEDIAENVIAAINGL 228
+ +C + C ++VG + +I +N+ IN L
Sbjct: 180 LRSICKNTSYIPNNDNCLSVRVGYIQKHSIPEILQNIQDTINFL 223
>sp|P53026|RL10A_MOUSE 60S ribosomal protein L10a OS=Mus musculus GN=Rpl10a PE=1 SV=3
Length = 217
Score = 39.7 bits (91), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
YD FLA + ++ +P++LG K K P + ++N ++++V + ++ C
Sbjct: 107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLT-HNENMVAKVDEVKSTIKFQMKKVLCL 165
Query: 204 VLKVGKVSMGAEDIAENVIAAINGLLESL 232
+ VG V M +++ N+ A+N L+ L
Sbjct: 166 AVAVGHVKMTDDELVYNIHLAVNFLVSLL 194
>sp|P62907|RL10A_RAT 60S ribosomal protein L10a OS=Rattus norvegicus GN=Rpl10a PE=1 SV=2
Length = 217
Score = 39.7 bits (91), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
YD FLA + ++ +P++LG K K P + ++N ++++V + ++ C
Sbjct: 107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLT-HNENMVAKVDEVKSTIKFQMKKVLCL 165
Query: 204 VLKVGKVSMGAEDIAENVIAAINGLLESL 232
+ VG V M +++ N+ A+N L+ L
Sbjct: 166 AVAVGHVKMTDDELVYNIHLAVNFLVSLL 194
>sp|P62906|RL10A_HUMAN 60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2
Length = 217
Score = 39.7 bits (91), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
YD FLA + ++ +P++LG K K P + ++N ++++V + ++ C
Sbjct: 107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLT-HNENMVAKVDEVKSTIKFQMKKVLCL 165
Query: 204 VLKVGKVSMGAEDIAENVIAAINGLLESL 232
+ VG V M +++ N+ A+N L+ L
Sbjct: 166 AVAVGHVKMTDDELVYNIHLAVNFLVSLL 194
>sp|Q5E9E6|RL10A_BOVIN 60S ribosomal protein L10a OS=Bos taurus GN=RPL10A PE=2 SV=3
Length = 217
Score = 39.7 bits (91), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
YD FLA + ++ +P++LG K K P + ++N ++++V + ++ C
Sbjct: 107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLT-HNENMVAKVDEVKSTIKFQMKKVLCL 165
Query: 204 VLKVGKVSMGAEDIAENVIAAINGLLESL 232
+ VG V M +++ N+ A+N L+ L
Sbjct: 166 AVAVGHVKMTDDELVYNIHLAVNFLVSLL 194
>sp|P59231|R10A3_ARATH 60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC
PE=2 SV=1
Length = 217
Score = 38.9 bits (89), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQ-NWKEQIEKVCGSALLYLRTGTC 202
+ FLA + V+ +P+LLG K K P V HQ + + ++ + + L+ C
Sbjct: 107 FHAFLASESVIKQIPRLLGPGLNKAGKFPTLVS--HQESLESKVNETKATVKFQLKKVLC 164
Query: 203 SVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLK 246
+ VG +SM + I +NV ++N L+ SL +Q V L LK
Sbjct: 165 MGVAVGNLSMEEKQIFQNVQMSVNFLV-SLLKKNWQNVRCLYLK 207
>sp|Q9UVJ4|RL10A_CANAL 60S ribosomal protein L10a OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=RPL10A PE=3 SV=2
Length = 217
Score = 38.9 bits (89), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
Y+ F+A + ++ +P+LLG K K P PV + + ++ V + L+ C
Sbjct: 107 YNAFIASEVLIKQIPRLLGPTLSKAGKFPTPVS-HNDDLYSKVTDVKSTIKFQLKKVLCL 165
Query: 204 VLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLK 246
+ VG V M ED+ N I L SL +Q V L +K
Sbjct: 166 AVAVGNVDM-EEDVLVNQIMMAANFLVSLLKKNWQNVGSLVIK 207
>sp|Q6FRF5|RL10A_CANGA 60S ribosomal protein L10a OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPL10A
PE=3 SV=1
Length = 217
Score = 38.5 bits (88), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
Y+ F+A + ++ +P+LLG K K P PV + + ++ V + L+ C
Sbjct: 107 YNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVS-HNDDLYGKVTDVRSTIKFQLKKVLCL 165
Query: 204 VLKVGKVSMGAEDIAENVIAAINGLLESL 232
+ VG V M + + ++ ++N L+ L
Sbjct: 166 AVAVGNVEMDEDTLVNQILMSVNFLVSLL 194
>sp|P0CX44|RL1B_YEAST 60S ribosomal protein L1-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL1B PE=1 SV=1
Length = 217
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
Y+ F+A + ++ +P+LLG K K P PV + + ++ V + L+ C
Sbjct: 107 YNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVS-HNDDLYGKVTDVRSTIKFQLKKVLCL 165
Query: 204 VLKVGKVSMGAEDIAENVIAAINGLLESL 232
+ VG V M + + ++ ++N + L
Sbjct: 166 AVAVGNVEMEEDVLVNQILMSVNFFVSLL 194
>sp|P0CX43|RL1A_YEAST 60S ribosomal protein L1-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL1A PE=1 SV=1
Length = 217
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
Y+ F+A + ++ +P+LLG K K P PV + + ++ V + L+ C
Sbjct: 107 YNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVS-HNDDLYGKVTDVRSTIKFQLKKVLCL 165
Query: 204 VLKVGKVSMGAEDIAENVIAAINGLLESL 232
+ VG V M + + ++ ++N + L
Sbjct: 166 AVAVGNVEMEEDVLVNQILMSVNFFVSLL 194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.131 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,115,229
Number of Sequences: 539616
Number of extensions: 7882486
Number of successful extensions: 54016
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 1758
Number of HSP's that attempted gapping in prelim test: 36636
Number of HSP's gapped (non-prelim): 10335
length of query: 413
length of database: 191,569,459
effective HSP length: 120
effective length of query: 293
effective length of database: 126,815,539
effective search space: 37156952927
effective search space used: 37156952927
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)