Query 015100
Match_columns 413
No_of_seqs 155 out of 1200
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 06:41:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015100.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015100hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mzp_A 50S ribosomal protein L 100.0 2.1E-39 7E-44 306.6 16.3 205 18-249 2-209 (217)
2 2zkr_5 60S ribosomal protein L 100.0 9.8E-40 3.3E-44 307.8 13.4 202 19-249 1-205 (212)
3 1i2a_A 50S ribosomal protein L 100.0 9E-39 3.1E-43 302.6 17.2 201 20-249 2-205 (219)
4 3j21_A 50S ribosomal protein L 100.0 5.7E-40 1.9E-44 310.2 4.9 204 19-249 3-208 (216)
5 3o58_A L10A, 60S ribosomal pro 100.0 6.9E-42 2.4E-46 323.3 -9.3 209 16-249 1-210 (217)
6 3iz5_A 60S ribosomal protein L 100.0 4.1E-41 1.4E-45 317.9 -9.1 208 16-249 1-209 (216)
7 2wwq_5 50S ribosomal protein L 100.0 1.5E-32 5E-37 262.5 18.1 190 24-249 23-218 (234)
8 3qoy_A 50S ribosomal protein L 100.0 3.1E-32 1.1E-36 261.3 18.2 195 24-249 23-222 (242)
9 3bbo_D Ribosomal protein L1; l 100.0 4.6E-32 1.6E-36 270.4 14.2 190 24-249 137-332 (352)
10 3u42_A 50S ribosomal protein L 100.0 7.9E-28 2.7E-32 229.2 17.7 192 24-249 23-219 (229)
11 2ftc_A Mitochondrial ribosomal 99.9 1.4E-27 4.6E-32 221.5 15.4 172 52-249 2-177 (189)
12 2ov7_A 50S ribosomal protein L 99.4 4.8E-12 1.6E-16 112.0 13.7 58 191-249 68-127 (137)
No 1
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=100.00 E-value=2.1e-39 Score=306.58 Aligned_cols=205 Identities=20% Similarity=0.243 Sum_probs=178.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEEEEeccCCCC-C-cceeeeEeCCCCCCCCCCCCCCEEEEEec
Q 015100 18 RVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQV-S-RTNAFKIPLPHSLLGNDSDNPPEICLIMD 95 (413)
Q Consensus 18 ~Vd~eqV~kAVkALlk~~~k~~~~~K~~Lf~Ede~V~L~ItLKkIp~k-~-r~~p~~I~LPHpl~~~~~~~~~kICLIvk 95 (413)
.|+++++++||++|++| . ..+.+.|.| +|+|+|+|++++++ + +..++.|.|||+++. ..+||||++
T Consensus 2 ~v~~~~l~~Av~~ll~~-~----~~~~~kf~e--tvel~i~LK~~dp~~d~q~~rg~v~LPh~~~k-----~~~V~Vf~~ 69 (217)
T 1mzp_A 2 LADKESLIEALKLALST-E----YNVKRNFTQ--SVEIILTFKGIDMKKGDLKLREIVPLPKQPSK-----AKRVLVVPS 69 (217)
T ss_dssp CCCHHHHHHHHHHHHST-T----TCCCCSSCC--EEEEEEEESSCCGGGTTTCCEEEEECSSCCSS-----CCCEEEECC
T ss_pred ccCHHHHHHHHHHHHhh-c----cccccCCCc--cEEEEEEecCCCCcccccccceeecCCCCCCC-----CcEEEEEcC
Confidence 38999999999999998 2 134578987 99999999998665 5 567789999999864 789999999
Q ss_pred CCCCCchhHHHHHHhhhcCCCCcceeeechhHHhhcc-cHHHHHhhhhccCEEEEcCCchhhhhhhhcccccCCCCCCcc
Q 015100 96 DRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYR-PFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVP 174 (413)
Q Consensus 96 D~~~~~~t~~~ake~L~~~gi~i~kVI~lkkLkkeyK-sfEakRKL~~sYDlFLAD~rI~p~LpklLGK~F~kkkK~Pip 174 (413)
+++. ++| .+.|+ +.+++.++| ++++ .|+++|+|+.+||+|||++++|++||++||+.||+||+||+|
T Consensus 70 ~~~~-----~~A----~~aGa--d~~vg~~~L-~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LG~~LgprgkmP~p 137 (217)
T 1mzp_A 70 SEQL-----EYA----KKASP--KVVITREEL-QKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTP 137 (217)
T ss_dssp HHHH-----HHH----HHTCC--SEECCHHHH-HHHTTCHHHHHHHHHSCSEEEECGGGHHHHHHHTHHHHGGGTCCEEE
T ss_pred chhH-----HHH----HhcCC--CeeeCHHHH-HHHHhhHHhhhhchhhCCEEEECHHHHHHHHHHHhhhccccCCCCcc
Confidence 8732 344 34566 348999999 5664 478899999999999999999999999999999999999999
Q ss_pred ccCCcccHHHHHHHHHcccEEEccCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHhhccCCCeeecCcceeeecc
Q 015100 175 VDLKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIEG 249 (413)
Q Consensus 175 V~l~~~dLk~~Ieka~~st~f~l~~G~~~sVkVG~~sMs~eqIvENI~Avl~~L~~SlaLPiYqni~~v~iKi~~ 249 (413)
+.+ +.||...|+++++++.|+++++.|++++||+++|+++||+|||.+++++|...+. . |+++.++|||+|.
T Consensus 138 ~~g-t~dv~~~v~~~k~~v~~r~~k~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p-~-~~~ik~v~lksTm 209 (217)
T 1mzp_A 138 LPN-TADISEYINRFKRSVLVKTKDQPQVQVFIGTEDMKPEDLAENAIAVLNAIENKAK-V-ETNLRNIYVKTTM 209 (217)
T ss_dssp CCS-SSCCHHHHHHHHTEEEEECSSSSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCC-C-TTTEEEEEEEETT
T ss_pred cCC-CccHHHHHHHHhcceEEEecCCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc-c-chheEEEEEECCC
Confidence 999 5899999999999999999999999999999999999999999999999955553 4 8999999999886
No 2
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=9.8e-40 Score=307.81 Aligned_cols=202 Identities=20% Similarity=0.218 Sum_probs=176.7
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEEEEeccCCCC--CcceeeeEeCCCCCCCCCCCCCCEEEEEecC
Q 015100 19 VSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQV--SRTNAFKIPLPHSLLGNDSDNPPEICLIMDD 96 (413)
Q Consensus 19 Vd~eqV~kAVkALlk~~~k~~~~~K~~Lf~Ede~V~L~ItLKkIp~k--~r~~p~~I~LPHpl~~~~~~~~~kICLIvkD 96 (413)
++++++.+||++|+++. +.+.|.| +|+|+|+||+|+++ .+..++.|.|||+++. ..+||||+++
T Consensus 1 ~~~~~l~eAv~~llk~~-------~~~kf~e--tvel~i~Lk~~dp~k~d~~~rg~v~LPh~~~k-----~~~V~Vf~~~ 66 (212)
T 2zkr_5 1 MADQEIENAVSRALEDA-------PERNFRE--TVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQ-----ETTIVVFAEG 66 (212)
T ss_dssp -CCTTHHHHHHHHHHTS-------CCCSSCC--EEEEEEEESSCCTTTTTTCCCCEEECSSCCSS-----CCCEEEECCH
T ss_pred CCHHHHHHHHHHHHHhc-------ccCCCCc--eEEEEEEeCCCCCCcccccCceEEECCCCCCC-----CcEEEEEcCc
Confidence 36778999999998853 3456887 99999999998554 5666789999999864 7899999998
Q ss_pred CCCCchhHHHHHHhhhcCCCCcceeeechhHHhhcc-cHHHHHhhhhccCEEEEcCCchhhhhhhhcccccCCCCCCccc
Q 015100 97 RPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYR-PFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPV 175 (413)
Q Consensus 97 ~~~~~~t~~~ake~L~~~gi~i~kVI~lkkLkkeyK-sfEakRKL~~sYDlFLAD~rI~p~LpklLGK~F~kkkK~PipV 175 (413)
++. ++| .+.|+ .+++.++| ++++ .|+++|+|+.+||+|||++++|++||++||+.||+||+||+|+
T Consensus 67 ~~~-----~~A----~~aGa---~~vg~~~L-~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LGk~LgprgkmP~pk 133 (212)
T 2zkr_5 67 ETA-----LRA----EEVAD---DVLDEDEL-EELGGDDDAAKDLADDTDFFIAEKGLMQDIGRYLGTVLGPRGKMPEPL 133 (212)
T ss_dssp HHH-----HHH----HHHTS---CCCCHHHH-HHHTTCHHHHHHHHHHCSEEEECTTTHHHHHHHTHHHHHHHTCCEEEC
T ss_pred hhH-----HHH----HhcCC---CEeCHHHH-HHHHhhHHhhhcccccCCEEEECHHHHHHHHHHHhhhccccCCcCccc
Confidence 732 344 34566 58999999 7766 6999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHcccEEEccCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHhhccCCCeeecCcceeeecc
Q 015100 176 DLKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIEG 249 (413)
Q Consensus 176 ~l~~~dLk~~Ieka~~st~f~l~~G~~~sVkVG~~sMs~eqIvENI~Avl~~L~~SlaLPiYqni~~v~iKi~~ 249 (413)
.+ +.||...|+++++++.|++.++.|++++||+++|+++||+|||.+++++|. +.....|+++.++|||+|.
T Consensus 134 ~g-t~dv~~~i~~~k~~v~~r~~k~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~-~~~p~~~~~ik~v~lksTm 205 (212)
T 2zkr_5 134 DP-DDDVVEVIERMKNTVQLRSGERRTFHTRVGAEDMSAENIADNIDVILRRLH-ADLEKGPLNIDTVYVKTTM 205 (212)
T ss_dssp CS-SSCCHHHHHHHHTEEECCCSSSSEEEEEEEETTSCHHHHHHHHHHHHHHHH-TTTCCCTTTEEEEEEEESS
T ss_pred CC-CcCHHHHHHHHHcceEEEecCCCEEEEEEeCCCCCHHHHHHHHHHHHHHHH-HhCccccccEEEEEEECCC
Confidence 99 589999999999999999999999999999999999999999999999994 4455778999999999886
No 3
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=100.00 E-value=9e-39 Score=302.57 Aligned_cols=201 Identities=22% Similarity=0.285 Sum_probs=175.8
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEEEEeccCCCC-C-cceeeeEeCCCCCCCCCCCCCCEEEEEecCC
Q 015100 20 SPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQV-S-RTNAFKIPLPHSLLGNDSDNPPEICLIMDDR 97 (413)
Q Consensus 20 d~eqV~kAVkALlk~~~k~~~~~K~~Lf~Ede~V~L~ItLKkIp~k-~-r~~p~~I~LPHpl~~~~~~~~~kICLIvkD~ 97 (413)
++++|.+||++|+++. +.+.|.| +|+|+|+|++++++ + +..++.|.|||+++. +.+||||++++
T Consensus 2 ~~~~l~eAv~~llk~~-------~~~kf~e--tVel~i~LK~~dp~~d~q~vrg~v~LPh~~~k-----~~~V~Vf~~~~ 67 (219)
T 1i2a_A 2 DREALLQAVKEARELA-------KPRNFTQ--SFEFIATLKEIDMRKPENRIKTEVVLPHGRGK-----EAKIAVIGTGD 67 (219)
T ss_dssp CHHHHHHHHHHHHHHS-------CCCSSCC--EEEEEEEESSCCTTSGGGCCEEEEECTTCCSS-----CCCEEEECCHH
T ss_pred CHHHHHHHHHHHHHhc-------ccCCCCc--eEEEEEEecccCCcccccccceEEecCCCCCC-----CcEEEEEcCch
Confidence 5889999999998864 3456887 99999999998665 4 466789999999964 78999999987
Q ss_pred CCCchhHHHHHHhhhcCCCCcceeeechhHHhhcc-cHHHHHhhhhccCEEEEcCCchhhhhhhhcccccCCCCCCcccc
Q 015100 98 PKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYR-PFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVD 176 (413)
Q Consensus 98 ~~~~~t~~~ake~L~~~gi~i~kVI~lkkLkkeyK-sfEakRKL~~sYDlFLAD~rI~p~LpklLGK~F~kkkK~PipV~ 176 (413)
+. ++| .+.|+ .+++.++| .+|+ .++++|+|+.+||+|||++++|++||++||+.||+||+||+|+.
T Consensus 68 ~~-----~~A----~~aGa---~~vg~~~L-~ki~~~kk~~r~l~~~fD~~lA~~~~m~~l~k~LGk~LgprgkmP~pk~ 134 (219)
T 1i2a_A 68 LA-----KQA----EELGL---TVIRKEEI-EELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVP 134 (219)
T ss_dssp HH-----HHH----HHTTC---EEECHHHH-HHHHHCHHHHHHHHHHCSEEEEEGGGHHHHHHHTHHHHGGGTCCCEEEC
T ss_pred hH-----HHH----HHCCC---CEEcHHHH-HHHHhhhhhhhhchhhCCEEEECHHHHHHHHHHHhhhhcccCCCCcccC
Confidence 32 344 34676 69999999 7775 36688999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHcccEEEccCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHhhccCCCeeecCcceeeecc
Q 015100 177 LKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIEG 249 (413)
Q Consensus 177 l~~~dLk~~Ieka~~st~f~l~~G~~~sVkVG~~sMs~eqIvENI~Avl~~L~~SlaLPiYqni~~v~iKi~~ 249 (413)
+ +.||...|+++++++.|+++++.|++++||+++|+++||+|||.+++++|... ....|+++.++|||+|.
T Consensus 135 g-t~dv~~~v~~~k~~v~~r~~k~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~-~p~~~~~ik~v~lksTm 205 (219)
T 1i2a_A 135 A-NANIKPLVERLKKTVVINTRDKPYFQVLVGNEKMTDEQIVDNIEAVLNVVAKK-YEKGLYHIKDAYVKLTM 205 (219)
T ss_dssp T-TCCCHHHHHHHHTEEEEECTTSSEEEEEEEETTSCHHHHHHHHHHHHHHHHHH-STTGGGGEEEEEEEETT
T ss_pred C-CccHHHHHHHHhcceEEEecCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHh-CCccccceEEEEEECCC
Confidence 9 58999999999999999999999999999999999999999999999999544 44678999999999887
No 4
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=5.7e-40 Score=310.20 Aligned_cols=204 Identities=25% Similarity=0.317 Sum_probs=179.1
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEEEEeccCCCC--CcceeeeEeCCCCCCCCCCCCCCEEEEEecC
Q 015100 19 VSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQV--SRTNAFKIPLPHSLLGNDSDNPPEICLIMDD 96 (413)
Q Consensus 19 Vd~eqV~kAVkALlk~~~k~~~~~K~~Lf~Ede~V~L~ItLKkIp~k--~r~~p~~I~LPHpl~~~~~~~~~kICLIvkD 96 (413)
++++++.+||+.+++ ..+.+.|.| +|+|+|+|++|+++ ++...+.|.|||++++ +.+||||+++
T Consensus 3 ~~~~~~~eav~~~~~-------~~~~~kF~e--tvel~i~L~~~dp~k~d~~~rg~v~LPh~~~k-----~~kV~Vf~~~ 68 (216)
T 3j21_A 3 FDRQKIVKAVKEAKA-------RAKPRNFTQ--SVEVAVNLKDIDLKRPENRFKLEVVLPHGRGK-----DVKIAVIADG 68 (216)
T ss_dssp SSCSSCCCCTTTTCC-------CCCCSSSCC--EEEEEEEESSCCSSSGGGSCCEEEECSSCCSS-----CCCEEECCCS
T ss_pred CCHHHHHHHHHHHHH-------hCcccCCCc--eEEEEEEECCCCCCCcCceeeEEEeCCCCCCC-----CcEEEEECCH
Confidence 677888999998876 234577998 99999999989654 4667789999999976 6799999986
Q ss_pred CCCCchhHHHHHHhhhcCCCCcceeeechhHHhhcccHHHHHhhhhccCEEEEcCCchhhhhhhhcccccCCCCCCcccc
Q 015100 97 RPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVD 176 (413)
Q Consensus 97 ~~~~~~t~~~ake~L~~~gi~i~kVI~lkkLkkeyKsfEakRKL~~sYDlFLAD~rI~p~LpklLGK~F~kkkK~PipV~ 176 (413)
.+. ++| ++.|+ .+++.+.|++.|+.|+++|+|+.+||+||||+++|++||++||+.||+|++||+|+.
T Consensus 69 ~~~-----~~A----k~aGa---d~vg~e~L~k~~k~~k~~kkl~~~fD~~lA~~~im~~l~k~LGk~LgprgkmP~pk~ 136 (216)
T 3j21_A 69 AVA-----EAA----RKLGL---DVISSAELEEIASSPRQARKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVP 136 (216)
T ss_dssp HHH-----HHH----HHHTC---CCCCTTHHHHHHHCCCSSSCCSSSCSEEEBCGGGHHHHHHHHHHHHTTSSSSCCTTT
T ss_pred HHH-----HHH----HhcCC---CccCHHHHHHHhcCHHHHhhhhhhCCEEEeCHHHHHHHHHHHHHHhccCCccCCCcC
Confidence 532 234 34576 389999998888888889999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHcccEEEccCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHhhccCCCeeecCcceeeecc
Q 015100 177 LKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIEG 249 (413)
Q Consensus 177 l~~~dLk~~Ieka~~st~f~l~~G~~~sVkVG~~sMs~eqIvENI~Avl~~L~~SlaLPiYqni~~v~iKi~~ 249 (413)
++..||..+|+++++++.|++++++|++++||+++|+++||+|||.+++++|.. .....|+++.++|||+|-
T Consensus 137 gtv~dv~~~v~~~k~~v~~r~~k~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~-~~p~~~k~Iksi~lksTm 208 (216)
T 3j21_A 137 PTLTDLTPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIEAVLNAIIG-KLERGESQVKSVYVKTTM 208 (216)
T ss_dssp TCBCSHHHHHHHHTCEEEEEEETTTEEECCCEESSSCHHHHHHHHHHHHHHHHH-SCCCSSCSEEEEEEEESS
T ss_pred CcHHHHHHHHHHHHhhceeecCCCCEEEEEecCCCCCHHHHHHHHHHHHHHHHH-hccccccceEEEEEECCC
Confidence 875799999999999999999999999999999999999999999999999955 444679999999999986
No 5
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A
Probab=100.00 E-value=6.9e-42 Score=323.33 Aligned_cols=209 Identities=22% Similarity=0.336 Sum_probs=183.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEEEEeccCCC-CCcceeeeEeCCCCCCCCCCCCCCEEEEEe
Q 015100 16 GSRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQ-VSRTNAFKIPLPHSLLGNDSDNPPEICLIM 94 (413)
Q Consensus 16 ~s~Vd~eqV~kAVkALlk~~~k~~~~~K~~Lf~Ede~V~L~ItLKkIp~-k~r~~p~~I~LPHpl~~~~~~~~~kICLIv 94 (413)
||.|++++|++||++|+++.++ .+.+.|.| +|+|+|+||+|++ +++..++.|.|||++++ +.+||||+
T Consensus 1 ~sk~~~~~~~~av~~~l~~~~~----~~~~kf~e--tVel~i~Lk~idp~kd~~~rg~v~LPh~~~k-----~~~V~Vf~ 69 (217)
T 3o58_A 1 MSKITSSQVREHVKELLKYSNE----TKKRNFLE--TVELQVGLKNYDPQRDKRFSGSLKLPNCPRP-----NMSICIFG 69 (217)
T ss_dssp ---CCSTTHHHHTTSSSSCCSS----SSCCSSCC--CCCCCCCSCCSCSSSSSCCSCCCSCCCCCSS-----CCCCCCCS
T ss_pred CCccCHHHHHHHHHHHHHhccc----ccccCCCc--cEEEEEEecccCCCCCCcCCeEEECCCCCCC-----CcEEEEEc
Confidence 6899999999999999985421 25677887 9999999999944 46777788999999876 68999999
Q ss_pred cCCCCCchhHHHHHHhhhcCCCCcceeeechhHHhhcccHHHHHhhhhccCEEEEcCCchhhhhhhhcccccCCCCCCcc
Q 015100 95 DDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVP 174 (413)
Q Consensus 95 kD~~~~~~t~~~ake~L~~~gi~i~kVI~lkkLkkeyKsfEakRKL~~sYDlFLAD~rI~p~LpklLGK~F~kkkK~Pip 174 (413)
+++... +| ++.|+ .+++.++|++.|+.|+.+|+|+.+||+||||+++|++||++||+.|++++|||+|
T Consensus 70 ~~~~~~-----~A----k~aGa---~~vg~~~L~~~~k~~k~~~~l~~~fD~~iA~~~im~~l~riLG~~l~p~gk~P~p 137 (217)
T 3o58_A 70 DAFDVD-----RA----KSCGV---DAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTP 137 (217)
T ss_dssp STTSSG-----GG----TTTTC---CCCCSTTTTTTSCSSSHHHHHHCSSSCCCCCCCCSSCCSSSSSSTTHHHHCSSCC
T ss_pred CcHhHH-----HH----HHcCC---CEeCHHHHHHHhhchhHhhhhhhhCCEEEECHHHHHHHHHHhhhhhcccCCcCCC
Confidence 997652 34 34566 3899999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccHHHHHHHHHcccEEEccCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHhhccCCCeeecCcceeeecc
Q 015100 175 VDLKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIEG 249 (413)
Q Consensus 175 V~l~~~dLk~~Ieka~~st~f~l~~G~~~sVkVG~~sMs~eqIvENI~Avl~~L~~SlaLPiYqni~~v~iKi~~ 249 (413)
++.+ .||..+|+++++++.|++.+++|++++||+++|+++||+|||.+++++|...+. ..|+++.++|||+|-
T Consensus 138 ~~vt-~dv~~~v~~~k~~v~~r~~k~~~i~v~IG~~~~~~e~l~eNi~avi~~l~~~~p-k~~~~iksi~lksTm 210 (217)
T 3o58_A 138 VSHN-DDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLK-KNWQNVGSLVVKSSM 210 (217)
T ss_dssp SCTT-TCSSSGGGGTTSCCSCCCCSSSCCCCCCCSSSCCSHHHHHHHHHTCSTTTCCSS-SCSCCCSCCCCCSSS
T ss_pred cCCc-hhHHHHHHHHhceEEEEeCCCCEEEEeeccCCCCHHHHHHHHHHHHHHHHHhcc-cCCceEEEEEEECCC
Confidence 9985 799999999999999999999999999999999999999999999999955544 469999999999886
No 6
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=100.00 E-value=4.1e-41 Score=317.87 Aligned_cols=208 Identities=22% Similarity=0.329 Sum_probs=183.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEEEEeccCCC-CCcceeeeEeCCCCCCCCCCCCCCEEEEEe
Q 015100 16 GSRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQ-VSRTNAFKIPLPHSLLGNDSDNPPEICLIM 94 (413)
Q Consensus 16 ~s~Vd~eqV~kAVkALlk~~~k~~~~~K~~Lf~Ede~V~L~ItLKkIp~-k~r~~p~~I~LPHpl~~~~~~~~~kICLIv 94 (413)
||.|+++++.+||+.++++.. .+.+.|.| +|+|+|+|++|++ +++..++.|.|||++++ +.+||||+
T Consensus 1 ~~k~~~~~l~eav~~~~~~~~-----~~~~kF~e--tvel~i~Lk~idp~kd~~~rg~v~LPh~~~k-----~~kV~Vf~ 68 (216)
T 3iz5_A 1 MSKLQSDAVKDAITQIVGEAR-----EKKRKFTE--TVELQIGLKNYDPQKDKRFSGSVKLPHIPRP-----KMRVCMLG 68 (216)
T ss_dssp CTGGGSCSSCEECTTTSSSST-----THHHHCCC--SSCCEEEEEEECCCCSSSTTCCEECCBCSSC-----CCCCCCEE
T ss_pred CCccCHHHHHHHHHHHHHhcc-----ccccCCCc--cEEEEEEecccCcccccccceeecCCCCCCC-----CcEEEEEc
Confidence 678999999999999987431 13567888 9999999998844 46777789999999976 68999999
Q ss_pred cCCCCCchhHHHHHHhhhcCCCCcceeeechhHHhhcccHHHHHhhhhccCEEEEcCCchhhhhhhhcccccCCCCCCcc
Q 015100 95 DDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVP 174 (413)
Q Consensus 95 kD~~~~~~t~~~ake~L~~~gi~i~kVI~lkkLkkeyKsfEakRKL~~sYDlFLAD~rI~p~LpklLGK~F~kkkK~Pip 174 (413)
++... ++|+ +.|+ .+++.++|++.|+.|+.+|+|+.+||+||||+++|++||++||+.|++++|||+|
T Consensus 69 ~~~~~-----~~A~----~aGa---~~vg~~~L~~~~k~~~~~rkl~~~fD~~lA~~~i~~~l~riLG~~l~p~gk~P~p 136 (216)
T 3iz5_A 69 DAQHV-----DQAE----KMGL---DYMDVESLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTL 136 (216)
T ss_dssp EECCT-----HHHH----HHHH---TCSEEECGGGHHHHHHTCCCCSEEEECTTTHHHHHHHHHHHHTTTCSCCTTTTCB
T ss_pred ChHhH-----HHHH----hccC---CEeCHHHHHHHhhchHHHHHHHhhCCEEEECHHHHHHHHHHhcccccccCCcCCC
Confidence 87654 3453 3455 3899999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccHHHHHHHHHcccEEEccCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHhhccCCCeeecCcceeeecc
Q 015100 175 VDLKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIEG 249 (413)
Q Consensus 175 V~l~~~dLk~~Ieka~~st~f~l~~G~~~sVkVG~~sMs~eqIvENI~Avl~~L~~SlaLPiYqni~~v~iKi~~ 249 (413)
++++ .|+...|+++++++.|+++++.|++++||+++|+++||+|||.+++++|...+. ..|+++.++|||+|-
T Consensus 137 ~~~t-~dv~~~v~~~k~~v~~r~~k~~~i~v~IG~~~~~~e~L~eNi~avi~~l~~~~p-~~~~~Iksv~iksTm 209 (216)
T 3iz5_A 137 VSHQ-ESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMDEKQIQQNIQMSVNFLVSLLK-KNWQNVRCLYVKSTM 209 (216)
T ss_dssp CSCH-HHHHHHHHHTBCCEEECTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCCSS-CCSCSCSEEEECCSS
T ss_pred cCCc-ccHHHHHHHHHhhhheeCCCccEEEEecCCCCCCHHHHHHHHHHHHHHHHHhcc-CCCceEEEEEEECCC
Confidence 9974 899999999999999999999999999999999999999999999999966554 489999999999876
No 7
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=100.00 E-value=1.5e-32 Score=262.48 Aligned_cols=190 Identities=14% Similarity=0.151 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEEEEeccCCCC--CcceeeeEeCCCCCCCCCCCCCCEEEEEecCCCCCc
Q 015100 24 VERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQV--SRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSN 101 (413)
Q Consensus 24 V~kAVkALlk~~~k~~~~~K~~Lf~Ede~V~L~ItLKkIp~k--~r~~p~~I~LPHpl~~~~~~~~~kICLIvkD~~~~~ 101 (413)
+.+||+.|.+ .+...|.| +|+|+|+| +|+++ ++...+.|.|||++++ +.+||||+++++.
T Consensus 23 ~~eAv~~lk~--------~~~~kF~e--tvel~i~L-~vdp~k~dq~vrg~V~LPh~~~k-----~~rV~Vfa~~~~~-- 84 (234)
T 2wwq_5 23 INEAIALLKE--------LATAKFVE--SVDVAVNL-GIDARKSDQNVRGATVLPHGTGR-----SVRVAVFTQGANA-- 84 (234)
T ss_dssp HHHHHHHHHH--------TCCCSSCC--EEEEEEEE-CSCCCSSTTSCCEEEECSSCCSS-----CCCEEEECSSSCH--
T ss_pred HHHHHHHHHH--------hccCCCCc--eEEEEEEE-CCCCcccCcccceEEeCCCCCCC-----CcEEEEEcCchhH--
Confidence 6788887642 13466887 99999999 88554 5667789999999965 6899999999853
Q ss_pred hhHHHHHHhhhcCCCCcceeeechhHHhhcccHHHHHhhhhccCEEEEcCCchhhhhhhhcccccCCCCCCccccCC-cc
Q 015100 102 LTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLK-HQ 180 (413)
Q Consensus 102 ~t~~~ake~L~~~gi~i~kVI~lkkLkkeyKsfEakRKL~~sYDlFLAD~rI~p~LpklLGK~F~kkkK~PipV~l~-~~ 180 (413)
++|+ +.|+ .++|.++|..+++. .+.+||+|||++++|++|++ ||+.||+||+||+|+.++ +.
T Consensus 85 ---~~Ak----~aGa---d~vg~edLi~kik~------~~~~fD~~iAtp~~m~~l~~-LGkiLgprGlmP~pk~gTvt~ 147 (234)
T 2wwq_5 85 ---EAAK----AAGA---ELVGMEDLADQIKK------GEMNFDVVIASPDAMRVVGQ-LGQVLGPRGLMPNPKVGTVTP 147 (234)
T ss_dssp ---HHHH----HHTC---SEECSHHHHHHHHH------TCCCSSEEEECHHHHHHTTS-SCSCCCSSCCSCCTTTTCBCS
T ss_pred ---HHHH----HcCC---CEEcHHHHHHHHHc------CcccCCEEEECHHHHHHHHH-HhhhhccCCCCCCccCCCccc
Confidence 3553 3566 58999999877752 24899999999999999999 999999999999999997 78
Q ss_pred cHHHHHHHHHcc-cEEEccCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHhhccCCCe--eecCcceeeecc
Q 015100 181 NWKEQIEKVCGS-ALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVY--QAVPDLKLKIEG 249 (413)
Q Consensus 181 dLk~~Ieka~~s-t~f~l~~G~~~sVkVG~~sMs~eqIvENI~Avl~~L~~SlaLPiY--qni~~v~iKi~~ 249 (413)
||...|++++++ +.|++.++.|++++||+++|+++||+|||.+++++|. +.....| +++.++||++|.
T Consensus 148 dv~~~V~~~k~g~v~~r~~k~~~i~v~VG~~~f~~e~L~eNi~a~i~~l~-~~~p~~~kg~~Ik~v~lksTm 218 (234)
T 2wwq_5 148 NVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALK-KAKPTQAKGVYIKKVSISTTM 218 (234)
T ss_dssp CSHHHHHHHHHHEEEECCSSSCEEEEEEEETTSCHHHHHHHHHHHHHHHH-HSCCSSCCSCCEEEEEEEESS
T ss_pred cHHHHHHHHHcCeeEEEecCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHH-HhCcccccCCeEEEEEEECCC
Confidence 999999999988 6999999999999999999999999999999999994 5555678 699999999987
No 8
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=100.00 E-value=3.1e-32 Score=261.30 Aligned_cols=195 Identities=17% Similarity=0.244 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEEEEeccCCCC--CcceeeeEeCCCCCCCCCCCCCCEEEEEecCCCCCc
Q 015100 24 VERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQV--SRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSN 101 (413)
Q Consensus 24 V~kAVkALlk~~~k~~~~~K~~Lf~Ede~V~L~ItLKkIp~k--~r~~p~~I~LPHpl~~~~~~~~~kICLIvkD~~~~~ 101 (413)
+.+||+.++++... +.+.|.| +|+|+|+| +++++ ++...+.|.|||+++. ..+||||+++.+.
T Consensus 23 l~eAi~~~k~~~~~-----~~rkF~e--tVel~i~L-~vDp~k~d~~vrg~V~LPh~~gk-----~~kV~Vfa~~~~~-- 87 (242)
T 3qoy_A 23 LEEAVDLLKKMEEV-----LQRRFDE--TVELAMRL-NVDPRYADQMVRGSVVLPHGLGK-----PIKVVVFAEGEYA-- 87 (242)
T ss_dssp HHHHHHHHHHHHHH-----HCCSSCC--EEEEEEEE-SCCTTSGGGCCEEEEECSCCCSS-----CCCEEEECCHHHH--
T ss_pred HHHHHHHHHhhccc-----ccCCCCC--cEEEEEEe-ccCCCCCCCccceEecCCCCCCC-----CcEEEEEcCHHHH--
Confidence 68899998876532 3478988 99999999 67655 4667789999999976 6899999997532
Q ss_pred hhHHHHHHhhhcCCCCcceeeechhHHhhcccHHHHHhhhhccCEEEEcCCchhhhhhhhcccccCCCCCCccccCC-cc
Q 015100 102 LTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLK-HQ 180 (413)
Q Consensus 102 ~t~~~ake~L~~~gi~i~kVI~lkkLkkeyKsfEakRKL~~sYDlFLAD~rI~p~LpklLGK~F~kkkK~PipV~l~-~~ 180 (413)
++| ++.|+ .+++.++|..++- ++.+.+||+|||++++|++|++ ||+.|||||+||+|+.++ +.
T Consensus 88 ---~eA----k~aGa---d~vg~~dLi~ki~-----k~g~~~fD~~iAtpd~m~~l~~-LGriLGPrGlmP~pk~gTvt~ 151 (242)
T 3qoy_A 88 ---KKA----EEAGA---DYVGGDELINKIL-----KEEWTDFDVAIATPEMMPKVAK-LGRILGPRGLMPSPKTGTVTT 151 (242)
T ss_dssp ---HHH----HHTTC---SEEESHHHHHHHH-----HHTCCCCSEEEECTTTHHHHGG-GHHHHGGGTCSCCGGGTCBCS
T ss_pred ---HHH----HHcCC---CEECcHHHHHHHH-----hCCCccCCEEEECHHHHHHHHH-HhHHhccccCCCcccCCccch
Confidence 345 35677 4889999987551 3567899999999999999999 999999999999999997 68
Q ss_pred cHHHHHHHHHc-ccEEEccCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHhhccCC-CeeecCcceeeecc
Q 015100 181 NWKEQIEKVCG-SALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALP-VYQAVPDLKLKIEG 249 (413)
Q Consensus 181 dLk~~Ieka~~-st~f~l~~G~~~sVkVG~~sMs~eqIvENI~Avl~~L~~SlaLP-iYqni~~v~iKi~~ 249 (413)
||...|+++++ ++.|++.++.|++++||+++|+++||+|||.+++++|...+... -|+++.++||++|.
T Consensus 152 dv~~~V~~~k~G~v~fr~~k~~~i~v~VG~~~m~~e~L~eNi~a~i~~l~~~~p~~~kg~~Ik~v~lkSTm 222 (242)
T 3qoy_A 152 NVEQAIKDAKRGRVEFKVDKAGNVHMPVGKISFEKEKLIDNLYAAIDAVVRAKPPGAKGQYIKNMAVSLTM 222 (242)
T ss_dssp CHHHHHHHHHTTEEEEECCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHTCCTTCCSCSEEEEEEEETT
T ss_pred hHHHHHHHHhcCcEEEEecCCcEEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCcccCCceEEEEEEECCC
Confidence 99999999998 58999999999999999999999999999999999996544322 39999999999987
No 9
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.97 E-value=4.6e-32 Score=270.38 Aligned_cols=190 Identities=13% Similarity=0.136 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEEEEeccCCCC--CcceeeeEeCCCCCCCCCCCCCCEEEEEecCCCCCc
Q 015100 24 VERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQV--SRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSN 101 (413)
Q Consensus 24 V~kAVkALlk~~~k~~~~~K~~Lf~Ede~V~L~ItLKkIp~k--~r~~p~~I~LPHpl~~~~~~~~~kICLIvkD~~~~~ 101 (413)
+.+||+.|.+ .+...|.| +|+|+|+| +|+++ .+...+.|.|||+++. ..+||||+++++.
T Consensus 137 l~EAi~llK~--------~~~~KFdE--TVEl~I~L-~vDpkk~dq~vRGtV~LPhgtgk-----~~kVcVfa~ge~~-- 198 (352)
T 3bbo_D 137 LKTALSLMKQ--------MSSTKFVE--TAEAHFRL-NIDPKYNDQQLRATVSLPKGTGK-----TVKIAVLAQGDKI-- 198 (352)
T ss_dssp TTTTHHHHST--------TCCSSSCC--EECCEEEE-CSCTTSSTTCCEEEECCTTTSSS-----SSCEEEECCTTTT--
T ss_pred HHHHHHHHHh--------ccccCCCc--eEEEEEEe-CCCCcccccccceeecCCCCCCC-----ccEEEEEeCchhH--
Confidence 4567766544 24567888 99999999 88765 5667789999999865 7899999998854
Q ss_pred hhHHHHHHhhhcCCCCcceeeechhHHhhcccHHHHHhhhhccCEEEEcCCchhhhhhhhcccccCCCCCCccccCC-cc
Q 015100 102 LTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLK-HQ 180 (413)
Q Consensus 102 ~t~~~ake~L~~~gi~i~kVI~lkkLkkeyKsfEakRKL~~sYDlFLAD~rI~p~LpklLGK~F~kkkK~PipV~l~-~~ 180 (413)
++| .+.|+ +++|.++|.+.++ +++.+||+|||++++|++|++ ||++||+||+||+|+.++ +.
T Consensus 199 ---eeA----k~AGA---dvVG~edLikkIK------kg~~dFD~fIAtpdmM~~lgr-LGkiLGPRGlMPnPk~GTVt~ 261 (352)
T 3bbo_D 199 ---DEA----KAAGA---DIVGGEELIEQIK------GGFMDFDKLIATSDMMAKVAS-LGRILGPRGLMPTPKAGTVTP 261 (352)
T ss_dssp ---HHH----HTTTC---SEEECTTTHHHHT------TTCCCCSEEEECSSSHHHHGG-GGGTTTTTTCSCCTTTTCBSS
T ss_pred ---HHH----HHcCC---CccCHHHHHHHHH------hchhhcCEEEECHHHHHHHHh-hcccccccCCCCCCcCCcccc
Confidence 355 34566 6999999988764 799999999999999999999 999999999999999997 68
Q ss_pred cHHHHHHHHHcc-cEEEccCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHhhccCCCe--eecCcceeeecc
Q 015100 181 NWKEQIEKVCGS-ALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVY--QAVPDLKLKIEG 249 (413)
Q Consensus 181 dLk~~Ieka~~s-t~f~l~~G~~~sVkVG~~sMs~eqIvENI~Avl~~L~~SlaLPiY--qni~~v~iKi~~ 249 (413)
||...|++++++ +.|++.++.|++++||+++|+++||+|||.+++++|. +.....| +++.++||++|.
T Consensus 262 Dva~aV~e~K~G~v~fR~dK~g~ihv~VGk~sfs~EqL~ENI~Avi~~L~-k~kP~~~KG~yIksv~LkSTM 332 (352)
T 3bbo_D 262 NVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVE-TNKPTGAKGVYWKSAHISSSM 332 (352)
T ss_dssp CHHHHHTTTTTCCEEEECCSSCEECCCCEETTSCHHHHHHHHHHHHHHHH-TTCCTTCCSCSEEEEECCBSS
T ss_pred cHHHHHHHHHcCeeEEEeCCCCEEEEEEeCCCCCHHHHHHHHHHHHHHHH-HhCcccccCceEEEEEEECCC
Confidence 999999999988 6999999999999999999999999999999999994 5555678 489999999886
No 10
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=99.95 E-value=7.9e-28 Score=229.16 Aligned_cols=192 Identities=15% Similarity=0.119 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEEEEeccCCCC-CcceeeeEeCCCCCCCCCCCCCCEEEEEecCCCCCch
Q 015100 24 VERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQV-SRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSNL 102 (413)
Q Consensus 24 V~kAVkALlk~~~k~~~~~K~~Lf~Ede~V~L~ItLKkIp~k-~r~~p~~I~LPHpl~~~~~~~~~kICLIvkD~~~~~~ 102 (413)
+.+||+.|.++ ....|.| +|+|+|+|...|.+ .+...+.|.|||++++ ..+||||+++...
T Consensus 23 ~~eAi~~lk~~--------~~~kF~e--tvel~i~L~vd~~k~dq~vrg~v~LP~g~gk-----~~kV~Vfa~~~~~--- 84 (229)
T 3u42_A 23 IDEAAHLVKEL--------ATAKFDE--TVEVHAKLGIDPRRSDQNVRGTVSLPHGLGK-----QVRVLAIAKGEKI--- 84 (229)
T ss_dssp HHHHHHHHHHH--------CCSSSCC--EEEEEEEESSCTTCGGGCCEEEEECSSSCST-----TSCEEEECCTHHH---
T ss_pred HHHHHHHHHHh--------CCCCCCc--cEEEEEEEccCCCCCCCceeEEEECCCCCCC-----ceEEEEecChHhH---
Confidence 77888766653 2345887 99999999433444 4566789999999986 6899999987532
Q ss_pred hHHHHHHhhhcCCCCcceeeechhHHhhcccHHHHHhhhhccCEEEEcCCchhhhhhhhcccccCCCCCCccccCC-ccc
Q 015100 103 TKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLK-HQN 181 (413)
Q Consensus 103 t~~~ake~L~~~gi~i~kVI~lkkLkkeyKsfEakRKL~~sYDlFLAD~rI~p~LpklLGK~F~kkkK~PipV~l~-~~d 181 (413)
++| .+.|+ .+++..+|..++ +....+||+|||++++|+.|++.||+.|+|||+||.|..++ ..|
T Consensus 85 --~eA----k~aGA---d~vG~~dLi~kI------k~g~~~fD~~iAtpd~m~~vg~~LG~iLGPrGlMPnpk~GTvt~d 149 (229)
T 3u42_A 85 --KEA----EEAGA---DYVGGEEIIQKI------LDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFN 149 (229)
T ss_dssp --HHH----HHTTC---SEEECTHHHHHH------HTTCCCCSEEEECGGGHHHHHHHHHHHHHHHTCCCCGGGTCBSSC
T ss_pred --HHH----HhcCC---ceeCcHHHHHHH------hcCCccccEEEEchHHHHHHHHhhccccccccccccCCCCCCCCC
Confidence 244 45677 488999887655 35677999999999999999988999999999999999987 579
Q ss_pred HHHHHHHHHcc-cEEEccCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHhhccCCCeee--cCcceeeecc
Q 015100 182 WKEQIEKVCGS-ALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQA--VPDLKLKIEG 249 (413)
Q Consensus 182 Lk~~Ieka~~s-t~f~l~~G~~~sVkVG~~sMs~eqIvENI~Avl~~L~~SlaLPiYqn--i~~v~iKi~~ 249 (413)
+...|+++..+ +.|+..+..|++++||+++|+++||+|||.+++++|. +.....|.+ +..+||++|-
T Consensus 150 v~~~v~~~K~g~v~~r~dk~g~i~~~IGk~~f~~e~L~eNi~a~i~~i~-~~kp~~~kg~~ik~v~lssTm 219 (229)
T 3u42_A 150 IGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALE-AHKPEGAKGTFLRSVYVTTVM 219 (229)
T ss_dssp HHHHHHHHHTTEEEEECCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHH-HTCCTTCCSCSEEEEEEECSS
T ss_pred HHHHHHHHhCceEEEEeCCCCeecccccCCCCCHHHHHHHHHHHHHHHH-HhCccccCCCeEEEEEEECCC
Confidence 99999999865 7899999999999999999999999999999999994 444345666 8999999876
No 11
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=99.95 E-value=1.4e-27 Score=221.50 Aligned_cols=172 Identities=16% Similarity=0.126 Sum_probs=141.5
Q ss_pred eEEEEEEeccCCCCCcceeeeEeCCCCCCCCCCCCCCEEEEEecCCCCCchhHHHHHHhhhcCCCCcceeeechhHHhhc
Q 015100 52 FVYLILTLKKIPQVSRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDY 131 (413)
Q Consensus 52 ~V~L~ItLKkIp~k~r~~p~~I~LPHpl~~~~~~~~~kICLIvkD~~~~~~t~~~ake~L~~~gi~i~kVI~lkkLkkey 131 (413)
.|+|+++|++ +.+...+.+.|.|||++.+. ..+||||+++++.. ++| ++.|+ .+++.++|.+++
T Consensus 2 ~ieL~m~l~~-~r~~~~~rg~V~LPhg~~k~----~~~V~Vfa~~~~~~----~~A----k~aGa---d~vg~~dLi~ki 65 (189)
T 2ftc_A 2 DLTLDMALGK-KKNVEPFTSVLSLPYPFASE----INKVAVFTENASEV----KIA----EENGA---AFAGGTSLIQKI 65 (189)
T ss_pred eEEEEEEecC-CccCcccceEEECCCCCCCC----CCEEEEEeCChhHH----HHH----HHcCC---CCcCHHHHHHHH
Confidence 5889999988 44433447899999998763 56999999985321 244 34676 578988887666
Q ss_pred ccHHHHHhhhhccCEEEEcCCchhhhhhhhcccccCCCCCCccccCC-cccHHHHHHHHHcccEEEccCCC--EEEEEEe
Q 015100 132 RPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLK-HQNWKEQIEKVCGSALLYLRTGT--CSVLKVG 208 (413)
Q Consensus 132 KsfEakRKL~~sYDlFLAD~rI~p~LpklLGK~F~kkkK~PipV~l~-~~dLk~~Ieka~~st~f~l~~G~--~~sVkVG 208 (413)
+. -..+||+|||++++|++|+++ |+.|++ |||+|+.++ +.||...|+++++++.|++.+.. |++++||
T Consensus 66 ~~------~~~~fD~~iAtp~~m~~l~~l-~~~Lg~--KmP~pk~gTvt~dv~~~v~~~k~g~~~r~~k~~~~~i~v~VG 136 (189)
T 2ftc_A 66 WD------DEIVADFYVAVPEIMPELNRL-RKKLNK--KYPKLSRNSIGRDIPKMLELFKNGHEIKVDEERENFLQTKIA 136 (189)
T ss_pred Hc------CCccCCEEEECHHHHHHHHHh-hccccC--CCCcccCCCccccHHHHHHHHhcceEEEeccCCCcEEEEEEE
Confidence 42 237899999999999999995 677874 599999997 78999999999999999999888 9999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhccCCCe-eecCcceeeecc
Q 015100 209 KVSMGAEDIAENVIAAINGLLESLALPVY-QAVPDLKLKIEG 249 (413)
Q Consensus 209 ~~sMs~eqIvENI~Avl~~L~~SlaLPiY-qni~~v~iKi~~ 249 (413)
+++|+++||+|||.|+++++. +.....| +++.+++|++|.
T Consensus 137 ~~~~~~e~L~eNi~a~i~~l~-~~~p~~~g~~ik~v~lssTm 177 (189)
T 2ftc_A 137 TLDMSSDQIAANLQAVINEVC-RHRPLNLGPFVVRAFLRSST 177 (189)
T ss_pred CCCCCHHHHHHHHHHHHHHHH-HhCchhcCccEEEEEEECCC
Confidence 999999999999999999995 4445667 789999999875
No 12
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A
Probab=99.38 E-value=4.8e-12 Score=111.98 Aligned_cols=58 Identities=19% Similarity=0.105 Sum_probs=52.3
Q ss_pred cccEEEccCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHhhccCCCe--eecCcceeeecc
Q 015100 191 GSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVY--QAVPDLKLKIEG 249 (413)
Q Consensus 191 ~st~f~l~~G~~~sVkVG~~sMs~eqIvENI~Avl~~L~~SlaLPiY--qni~~v~iKi~~ 249 (413)
+++.|++.+..|++++||+++|+++||+|||.|++++|. +.....| +++.++||++|-
T Consensus 68 g~v~fr~dk~~~ih~~VGk~sf~~e~L~eNi~a~i~~l~-~~kp~~~kg~~ik~v~issTM 127 (137)
T 2ov7_A 68 GRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALE-AHKPEGAKGTFLRSVYVTTTM 127 (137)
T ss_dssp CEEEEECCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHH-TTSCSSCCSCSEEEEEEEETT
T ss_pred CeEEEEECCCCEEEEEEecCCCCHHHHHHHHHHHHHHHH-HhCcccccCceEEEEEEECCC
Confidence 778999999999999999999999999999999999994 5554567 689999999886
Done!