RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015100
(413 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 6e-08
Identities = 45/230 (19%), Positives = 79/230 (34%), Gaps = 77/230 (33%)
Query: 22 KTVERAVKALLKWLKSNSQTQKPQL-LEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLL 80
+V +A+ L ++ P L I + S N +P P +L
Sbjct: 294 VSVRKAITVLF-FIGVRCYEAYPNTSLPP-----------SILEDSLENNEGVPSP--ML 339
Query: 81 GNDSDNPPEICLIMDDRPKSNLTKDAVMKKIK--NDNLPITKVIKITKLKTDYRPFEAKR 138
I SNLT++ V + N +LP K ++I+
Sbjct: 340 S-----------I------SNLTQEQVQDYVNKTNSHLPAGKQVEIS------------- 369
Query: 139 KLCDSYDIFLADKRVV--PLLPK-LLG-KHFFKKKKIPVPVDLKHQNWKEQI----EKVC 190
L + VV P P+ L G +K K P +D Q+ +I K+
Sbjct: 370 -LVNGAKNL-----VVSGP--PQSLYGLNLTLRKAKAPSGLD---QS---RIPFSERKLK 415
Query: 191 GSALLYLRTGT---CSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVY 237
S +L + +L + +D+ +N ++ N + + +PVY
Sbjct: 416 FS-NRFLPVASPFHSHLLV-PASDLINKDLVKNNVS-FNA--KDIQIPVY 460
Score = 51.6 bits (123), Expect = 4e-07
Identities = 58/278 (20%), Positives = 86/278 (30%), Gaps = 117/278 (42%)
Query: 5 VAPPLSLPPSA---------G--------SRVSPKTVERAVKALLKWLKSNSQTQ----- 42
P SLPPS G S ++ + V+ V L + Q +
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 43 KPQLLEQDDFV--------Y-LILTLKKIPQVSRTNAFKIP------------LP----- 76
+ V Y L LTL+K S + +IP LP
Sbjct: 373 GA-----KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 77 HS-LLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFE 135
HS LL SD LI D K+N++ +A +I P+ Y F+
Sbjct: 428 HSHLLVPASD------LINKDLVKNNVSFNAKDIQI-----PV------------YDTFD 464
Query: 136 AK--RKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEK----- 188
R L S +R+V + I +PV W+ +
Sbjct: 465 GSDLRVLSGS-----ISERIVDCI-------------IRLPVK-----WETTTQFKATHI 501
Query: 189 -VCG----SALLYL----RTGT-CSVLKVGKVSMGAED 216
G S L L + GT V+ G + + +D
Sbjct: 502 LDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDD 539
Score = 43.5 bits (102), Expect = 1e-04
Identities = 53/312 (16%), Positives = 92/312 (29%), Gaps = 127/312 (40%)
Query: 131 YRPFEAKRKLCDSYDIFLADK------RVVPLLPKLLGKHF--FKKKKIPVPVDLKHQNW 182
Y+ +A + + + D D +V P L HF K K+I +N+
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI-------RENY 1688
Query: 183 KEQIEKVCGSALLY--LRTGTCSVLKVGKVSMGAEDIAENVIAAI----NGLLE------ 230
SA+++ + G K+ K +I E+ + GLL
Sbjct: 1689 ---------SAMIFETIVDGKLKTEKIFK------EINEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 231 ------SLALPVYQAVPDLKLKIEGVKENE--------GEGQDKDSEKENA--------- 267
A ++ LK +G+ + GE A
Sbjct: 1734 PALTLMEKAA--FED-----LKSKGLIPADATFAGHSLGE--------YAALASLADVMS 1778
Query: 268 -EDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEVLDEDELGSDDDG-----EGDVGESEDG 321
E + ++ +G T+ + DELG + G G V S
Sbjct: 1779 IESL------VEVVFYRGM---------TMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 322 EDSED-----GKMSSGDIL---------------GKKRKKGDKERAQKLPK--KVAKVKK 359
E + GK +G ++ G R + + K+ K+
Sbjct: 1824 EALQYVVERVGK-RTGWLVEIVNYNVENQQYVAAGDLR---ALDTVTNVLNFIKLQKIDI 1879
Query: 360 DELSSDMKNEDV 371
EL + E+V
Sbjct: 1880 IELQKSLSLEEV 1891
Score = 34.6 bits (79), Expect = 0.078
Identities = 31/195 (15%), Positives = 63/195 (32%), Gaps = 68/195 (34%)
Query: 23 TVERAVKALLKWLKSNSQTQKPQLLEQDDFV-------Y--L-----ILTLK---KIPQV 65
+E KA + LKS L+ D Y L +++++ ++ V
Sbjct: 1738 LME---KAAFEDLKSK------GLIPADATFAGHSLGEYAALASLADVMSIESLVEV--V 1786
Query: 66 S-RTNAFKIPLPHSLLGNDSD-----NPPEICLIMDDRPKSNLTKDAVMKK-----IKND 114
R ++ +P LG + NP + + + + I N
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY 1846
Query: 115 NLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLA-DKRVVPLLPKLLGKHFFKKKKIPV 173
N+ + + A D R + + +L +F K +KI +
Sbjct: 1847 NVENQQYV-------------------------AAGDLRALDTVTNVL--NFIKLQKIDI 1879
Query: 174 PVDLKHQNWKEQIEK 188
++L+ E++E
Sbjct: 1880 -IELQKSLSLEEVEG 1893
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins,
ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A
3izs_A 1s1i_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B
3jyw_A
Length = 217
Score = 50.5 bits (121), Expect = 2e-07
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 127 LKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQI 186
LK + + +KL Y+ F+A + ++ +P+LLG K K P PV + ++
Sbjct: 90 LKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHN-DDLYGKV 148
Query: 187 EKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESL 232
V + L+ C + VG V M + + ++ ++N + L
Sbjct: 149 TDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLL 194
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_A
Length = 216
Score = 49.7 bits (119), Expect = 4e-07
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 138 RKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYL 197
+KL Y FLA + ++ +P+LLG K K P V ++ + ++ + + L
Sbjct: 100 KKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLV-SHQESLEAKVNETKATVKFQL 158
Query: 198 RTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESL 232
+ C + VG +SM + I +N+ ++N L+ L
Sbjct: 159 KKVLCMGVAVGNLSMDEKQIQQNIQMSVNFLVSLL 193
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 2e-06
Identities = 72/463 (15%), Positives = 125/463 (26%), Gaps = 163/463 (35%)
Query: 57 LTLKKIPQVSRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNL 116
K I V +AF ++ D C + D PKS L+K + I
Sbjct: 16 YQYKDILSVFE-DAFV---------DNFD-----CKDVQDMPKSILSK-EEIDHIIMSKD 59
Query: 117 PITKVIKI-----TKLKTDYRPFEAKRKLCDSYDIFLADK-RVVPLLPKLLGKHFFKKKK 170
++ +++ +K + + F + L +Y FL + P ++ + + +++
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKF-VEEVLRINYK-FLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 171 IP---VPVDLKHQNWKEQIEKVCGSALLYLR------------TG-TCSVLKV------- 207
V K+ + Q ALL LR +G T L V
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 208 ----GKV---SMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIEGVKENEGEGQDK 260
K+ ++ + E V+ + LL YQ P+ + +
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLL-------YQIDPNWTSRSDH----------S 220
Query: 261 DSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEVLDE------------------ 302
+ K + ++L K K Y + + VL
Sbjct: 221 SNIKLRIHSIQAE--LRRLLKSK------PYENCLL--VLLNVQNAKAWNAFNLSCKILL 270
Query: 303 --------DELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKKV 354
D L + + ++ K +L K R Q LP++V
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK----SLLLKYLD----CRPQDLPREV 322
Query: 355 AKVKKDELS------SDMKN-----EDVGKQKKQKKVGLSLKN----------------- 386
LS D + V K + SL
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 387 --------------------DEEKSSGKEKKKSMLGKVKKEKK 409
D K K S++ K KE
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Score = 42.5 bits (99), Expect = 3e-04
Identities = 47/306 (15%), Positives = 92/306 (30%), Gaps = 80/306 (26%)
Query: 34 WLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLLGNDSD----NPPE 89
WL + +LE + + + ++ K+ + HS+ P E
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKPYE 244
Query: 90 ICL-IMDD--RPKS----NL-------TKDA-VMKKIKNDNLPITKVIKITKLKTDYRPF 134
CL ++ + K+ NL T+ V + T I + P
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT---TTHISLDHHSMTLTPD 301
Query: 135 EAKRKL-----CDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKH-QNWKE-QIE 187
E K L C D+ P ++ + + L NWK +
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES--------IRDGLATWDNWKHVNCD 353
Query: 188 KVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLA-LPVYQAVPDLKLK 246
K+ + + S+ + AE + + L+ P +P + L
Sbjct: 354 KL---------------TTIIESSLNVLEPAE-----YRKMFDRLSVFPPSAHIPTILLS 393
Query: 247 I--EGVKENEGEGQDKDSEKENAEDVNDHGSKKKLKKKKG-----RIHEVRYMDSTIGEV 299
+ D K + V + K L +K+ I + Y++ + ++
Sbjct: 394 LIWF------------DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-YLELKV-KL 439
Query: 300 LDEDEL 305
+E L
Sbjct: 440 ENEYAL 445
Score = 37.9 bits (87), Expect = 0.006
Identities = 48/335 (14%), Positives = 89/335 (26%), Gaps = 111/335 (33%)
Query: 1 MVTT--------VAPPLSLPPSAGSRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDF 52
++TT ++ + S T + LLK+L +PQ L
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-----CRPQDLP---- 319
Query: 53 VYLILTLKKIPQVSRTNAFKIPLPHSLLG-NDSDNPPEICLIMDDRPK--SNLTKDAVMK 109
+V TN P S++ + D ++ D +
Sbjct: 320 ----------REVLTTN----PRRLSIIAESIRDGL--------ATWDNWKHVNCDKLTT 357
Query: 110 KIK---------------------NDNLPIT-KVIKITKLKTDYRPFE------AKRKLC 141
I+ + I ++ + K L
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 142 DS---------YDIFLADKRVVPLLPKL---------LGKHFFKKKKIPVPVDL------ 177
+ I+L K + L + K F IP +D
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 178 -KHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLAL-- 234
H E E++ +++L L+ K+ + A N +I L+ L
Sbjct: 478 GHHLKNIEHPERMTLFRMVFL---DFRFLE-QKIR--HDSTAWNASGSILNTLQQLKFYK 531
Query: 235 -------PVYQA-VPDLKLKIEGVKENEGEGQDKD 261
P Y+ V + + ++EN + D
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Score = 37.5 bits (86), Expect = 0.009
Identities = 49/327 (14%), Positives = 104/327 (31%), Gaps = 75/327 (22%)
Query: 22 KTVERAVKALLK----WLKSNSQTQKPQ-LLEQDDFVYLILTLKKIPQ------VSRTNA 70
+ V++ V+ +L+ +L S +T++ Q + ++ L Q VSR
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 71 FKIPLPHSLLGNDSDNPPEICLI--MDDRPKSNLTKDAVMKKIKNDNLPITKV--IKITK 126
+ L +LL P + LI + K+ + D + + K+ + +
Sbjct: 137 YL-KLRQALL---ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD-FKIFWLNLKN 191
Query: 127 LKTDYRPFEAKRKLC---DSYDIFLADKRVVPLLP----KLLGKHFFKKKKIPVPVDLKH 179
+ E +KL D +D L + + K K +
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK--------PY 243
Query: 180 QN--------WKEQIEKV----C--------GSALLYLRTGTCSVLKVGKVSMG-AEDIA 218
+N + C +L T + + + SM D
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 219 ENVIAAINGLLESLALPVYQAVPDLKLKIEGVKENEGEGQDKDSEKENAEDVNDHGSKKK 278
++++ LP + + ++ + E+ +D + +N + VN K
Sbjct: 304 KSLLLKYLDCRPQ-DLPR-EVLTTNPRRLSIIAESI---RDGLATWDNWKHVN----CDK 354
Query: 279 LKKKKGRIHEVRYMDSTIGEVLDEDEL 305
L ++S++ VL+ E
Sbjct: 355 LTTI---------IESSL-NVLEPAEY 371
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A
{Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5
1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Length = 217
Score = 42.3 bits (100), Expect = 9e-05
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 12/118 (10%)
Query: 124 ITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVP----VDLKH 179
+ KL+ RP + KL + FL ++ + L ++LG + K P P D+
Sbjct: 90 LQKLQGQKRPVK---KLARQNEWFLINQESMALAGRILGPALGPRGKFPTPLPNTADIS- 145
Query: 180 QNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVY 237
E I + S L+ + + +G M ED+AEN IA +N + +
Sbjct: 146 ----EYINRFKRSVLVKTKDQPQVQVFIGTEDMKPEDLAENAIAVLNAIENKAKVETN 199
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 212
Score = 42.3 bits (100), Expect = 1e-04
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 127 LKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQI 186
L+ +A + L D D F+A+K ++ + + LG + K+P P+D + E I
Sbjct: 85 LEELGGDDDAAKDLADDTDFFIAEKGLMQDIGRYLGTVLGPRGKMPEPLDPD-DDVVEVI 143
Query: 187 EKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLA 233
E++ + L +VG M AE+IA+N+ + L L
Sbjct: 144 ERMKNTVQLRSGERRTFHTRVGAEDMSAENIADNIDVILRRLHADLE 190
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein,
translation repressor, ribosome; 1.85A
{Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB:
1cjs_A 1u63_A 1dwu_A
Length = 219
Score = 40.4 bits (95), Expect = 5e-04
Identities = 22/110 (20%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Query: 127 LKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVP----VDLKHQNW 182
++ + RK+ ++D F+A ++PL+ + +G + K+P P ++K
Sbjct: 85 IEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIK---- 140
Query: 183 KEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESL 232
+E++ + ++ R + VG M E I +N+ A +N + +
Sbjct: 141 -PLVERLKKTVVINTRDKPYFQVLVGNEKMTDEQIVDNIEAVLNVVAKKY 189
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 39.5 bits (92), Expect = 0.002
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Query: 251 KENEGEGQDKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEVLDEDELGSDDD 310
+ D D +E A + +KKK +KKK + + + +
Sbjct: 11 GSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDK--ESGASVDEVA 68
Query: 311 GEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKK 353
+ + ED E ED + GD G KK K++ ++ PK
Sbjct: 69 RQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 31.0 bits (70), Expect = 0.65
Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 12/115 (10%)
Query: 296 IGEVLDEDELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKKVA 355
+ V + GS +G+ D + E+G S + + KK+ KG ++ P K +
Sbjct: 1 MAGVEEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKES 60
Query: 356 KVKKDELSSDMKNEDVGKQKKQKKVGLSLKNDEEKSSGKEKKKSMLGKVKKEKKK 410
DE++ ++ + +++ + +++ G KK+KKK
Sbjct: 61 GASVDEVARQLERSALEDKERDED------DEDGDGDGDGATG------KKKKKK 103
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.31
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 19/48 (39%)
Query: 183 KEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLE 230
K+ ++K+ S LY A+D A + AI +E
Sbjct: 19 KQALKKLQASLKLY-----------------ADDSAPAL--AIKATME 47
>1rxt_A Myristoyl-, glycylpeptide N-tetradecanoyltransferase 1; alpha-beta
structure, unique N-myristoyltransferase fold; 3.00A
{Homo sapiens} SCOP: d.108.1.2 d.108.1.2
Length = 496
Score = 32.0 bits (72), Expect = 0.37
Identities = 13/108 (12%), Positives = 39/108 (36%)
Query: 292 MDSTIGEVLDEDELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLP 351
+ + E + E+E+ G +S + G K+KK +++ ++
Sbjct: 9 VKPPAPPLPQMMEGNGNGHEHCSDCENEEDNSYNRGGLSPANDTGAKKKKKKQKKKKEKG 68
Query: 352 KKVAKVKKDELSSDMKNEDVGKQKKQKKVGLSLKNDEEKSSGKEKKKS 399
+ + + + + ++ ++ S+ K+ + K+S
Sbjct: 69 SETDSAQDQPVKMNSLPAERIQEIQKAIELFSVGQGPAKTMEEASKRS 116
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 29.5 bits (65), Expect = 2.0
Identities = 10/57 (17%), Positives = 22/57 (38%)
Query: 289 VRYMDSTIGEVLDEDELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKE 345
V + E E++ D+ E + + + G + +DG+ + R + E
Sbjct: 357 VDWFTGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPE 413
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large
ribosomal subunit, ribosomal R ribosome; 12.10A {Bos
taurus}
Length = 189
Score = 29.1 bits (66), Expect = 2.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 206 KVGKVSMGAEDIAENVIAAINGLL 229
K+ + M ++ IA N+ A IN +
Sbjct: 134 KIATLDMSSDQIAANLQAVINEVC 157
>3fs3_A Nucleosome assembly protein 1, putative; protein localization,
histone recognition, structural analysis, CHA; 2.30A
{Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Length = 359
Score = 29.5 bits (65), Expect = 2.1
Identities = 5/65 (7%), Positives = 20/65 (30%)
Query: 297 GEVLDEDELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKKVAK 356
G +++ + D + SE+ + + ++ + E ++
Sbjct: 291 GIIIESESNSIVSDVDSSYSSSENNSNYNSYESNNSAYNDENSNVDTNEYDDNEEEEEGA 350
Query: 357 VKKDE 361
++
Sbjct: 351 KSNED 355
>3hqc_A Tensin-like C1 domain-containing phosphatase; TENC1,
phosphotyrosine binding domain, PTB, TNS2, KIAA1075,
struct genomics, PSI-2; 1.80A {Homo sapiens} PDB: 2dkq_A
Length = 157
Score = 28.1 bits (62), Expect = 3.3
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 197 LRTG-TCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIEGV 250
LR G CSVL + V + + V A + L P V K+ +G+
Sbjct: 10 LRQGAACSVLYLTSVETESLTGPQAVARASSAALSCSPRPTPAVV-HFKVSAQGI 63
>1wvh_A Tensin, tensin1; beta sandwich, cell adhesion; 1.50A {Gallus
gallus} SCOP: b.55.1.2 PDB: 2gjy_A
Length = 134
Score = 27.7 bits (61), Expect = 3.8
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 201 TCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIEGV 250
C+VL + V M + + + A+ L + P V K+ +G+
Sbjct: 3 ACNVLFINSVEMESLTGPQAISKAVAETLVADPTPTATIV-HFKVSAQGI 51
>2vqr_A Putative sulfatase; phosphonate monoester hydrolase, hydrolase,
plasmid, formylglycine, phosphodiesterase; 1.42A
{Rhizobium leguminosarum BV} PDB: 2w8s_A
Length = 543
Score = 28.6 bits (64), Expect = 5.0
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 230 ESLALPVYQAVPDLKLKIEGVKENEGEGQDKDSEKENAEDVNDHGSKKKLKK-KKGRIHE 288
E + P+ A PD++ + + + + S + AE + +L++ +
Sbjct: 263 EDMPAPIRAANPDIEAAQHPLMKFYVDSIRRGSFFQGAEGSGATLDEAELRQMRATYCGL 322
Query: 289 VRYMDSTIGEVLDE-DELGSDDD 310
+ +D +G V DE G DD
Sbjct: 323 ITEVDDCLGRVFSYLDETGQWDD 345
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease,
hydrolase, endonuclease; 1.50A {Enterobacteria phage T4}
PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Length = 305
Score = 28.2 bits (62), Expect = 5.3
Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 2/101 (1%)
Query: 44 PQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLLGNDSDNPPEICLIMD--DRPKSN 101
QL + + KK ++ +A + L G+ DN + + D
Sbjct: 159 TQLHKYPNVKQWSPMHKKWVKIKSGSAEIDCMTKILKGDKKDNVASVKVRSDFWFTRVEG 218
Query: 102 LTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCD 142
++ I + K+ +++Y ++ L D
Sbjct: 219 ERTPSMKTSIVEAIANDREQAKVLLTESEYNRYKENLVLID 259
>1auk_A Arylsulfatase A; cerebroside-3-sulfate hydrolysis, lysosomal
enzyme, hydrolas; HET: NDG NAG; 2.10A {Homo sapiens}
SCOP: c.76.1.2 PDB: 1n2k_A* 1n2l_A* 1e1z_P* 1e2s_P*
1e3c_P* 1e33_P*
Length = 489
Score = 28.1 bits (63), Expect = 6.3
Identities = 4/23 (17%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 289 VRYMDSTIGEVLDE-DELGSDDD 310
+ +D+ +G ++ +LG ++
Sbjct: 233 LMELDAAVGTLMTAIGDLGLLEE 255
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA;
HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP:
b.56.1.1 PDB: 1ytf_C*
Length = 79
Score = 25.7 bits (56), Expect = 8.1
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 297 GEVLDEDELGSDDDGEGDVGESEDGEDSED 326
+LD DE+GS+ D D +GE+
Sbjct: 3 SALLDTDEVGSELDDSDDDYLISEGEEDGP 32
>4f9t_A 50S ribosomal protein L1; rossman fold, RNA; HET: MPD; 1.46A
{Thermus thermophilus} PDB: 3u4m_A 1eg0_N 1vsp_A 2hgj_C
2hgq_C 2hgu_C 1vsa_A 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C
1giy_C 2hw8_A 2j01_C 2j03_C 2jl6_C 2jl8_C 2om7_K* 2v47_C
...
Length = 229
Score = 27.3 bits (61), Expect = 9.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 207 VGKVSMGAEDIAENVIAAINGLL 229
VGK S E +A+N+ A I L
Sbjct: 176 VGKASFPPEKLADNIRAFIRALE 198
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A
2vpl_A
Length = 137
Score = 26.5 bits (59), Expect = 9.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 206 KVGKVSMGAEDIAENVIAAINGLL 229
VGK S E +A+N+ A I L
Sbjct: 83 PVGKASFPPEKLADNIRAFIRALE 106
>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG,
structural genomics, PSI-2, protein structure
initiative; 1.70A {Bacteroides fragilis}
Length = 491
Score = 27.7 bits (62), Expect = 9.6
Identities = 11/78 (14%), Positives = 30/78 (38%), Gaps = 11/78 (14%)
Query: 237 YQAVPDLKLKIEGVKENEGEGQDKDSEKENAEDVNDHGSKKKLKKKKGRIH---EVRYMD 293
Y+ VPD +I + D ++ + D+ G++ + + + +D
Sbjct: 235 YELVPDRYKEIY-------KDLDVEALCKGRPDIPAKGTEMGDYFRNNIRNYYACITGVD 287
Query: 294 STIGEVLDE-DELGSDDD 310
+G +++ + D+
Sbjct: 288 ENVGRIIEALKQNNLFDN 305
>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP
protein, ATA-box DNA, transcription/DNA complex; 2.50A
{Saccharomyces cerevisiae}
Length = 286
Score = 27.2 bits (58), Expect = 9.8
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 1/132 (0%)
Query: 212 MGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIEGVKENEGEGQDKDSEKENAEDVN 271
N + N + + P + P+++L I E D +SEK++ E+
Sbjct: 125 TNNSGATLNTNTSGNTNADVTSQPKIEVKPEIELTINNANITTVENIDDESEKKDDEEKE 184
Query: 272 DHGSKKKLKKKKGRIHEVRYMDSTIGEVLDEDELGSD-DDGEGDVGESEDGEDSEDGKMS 330
+ K + +K++ +++ +LD DE+GS+ DD + D SE ED D +
Sbjct: 185 EDVEKTRKEKEQIEQVKLQAKKEKRSALLDTDEVGSELDDSDDDYLISEGEEDGPDENLM 244
Query: 331 SGDILGKKRKKG 342
R K
Sbjct: 245 LCLYDKVTRTKA 256
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.131 0.360
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,056,879
Number of extensions: 373746
Number of successful extensions: 982
Number of sequences better than 10.0: 1
Number of HSP's gapped: 943
Number of HSP's successfully gapped: 75
Length of query: 413
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 317
Effective length of database: 4,021,377
Effective search space: 1274776509
Effective search space used: 1274776509
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.1 bits)