Query 015101
Match_columns 413
No_of_seqs 363 out of 2351
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:07:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02281 chlorophyllide a oxyg 100.0 2.1E-84 4.5E-89 660.2 40.0 410 1-411 126-536 (536)
2 PLN00095 chlorophyllide a oxyg 100.0 1.5E-50 3.2E-55 396.3 25.3 272 89-368 66-371 (394)
3 PLN02518 pheophorbide a oxygen 100.0 6.5E-50 1.4E-54 414.6 31.1 307 89-403 84-432 (539)
4 COG4638 HcaE Phenylpropionate 100.0 3.2E-42 6.9E-47 347.1 22.8 315 55-403 4-358 (367)
5 TIGR03228 anthran_1_2_A anthra 100.0 1.2E-39 2.7E-44 331.2 21.4 181 54-252 14-218 (438)
6 TIGR03229 benzo_1_2_benA benzo 100.0 5.9E-40 1.3E-44 333.8 18.2 179 55-252 15-220 (433)
7 cd04337 Rieske_RO_Alpha_Cao Ca 100.0 1.3E-31 2.8E-36 230.8 12.9 123 81-203 3-125 (129)
8 cd03545 Rieske_RO_Alpha_OHBDO_ 100.0 2E-31 4.3E-36 235.3 11.3 132 56-203 2-148 (150)
9 cd03479 Rieske_RO_Alpha_PhDO_l 100.0 5.9E-31 1.3E-35 231.1 12.8 132 79-210 5-142 (144)
10 cd03537 Rieske_RO_Alpha_PrnD T 100.0 9.1E-31 2E-35 223.2 12.2 109 94-203 2-119 (123)
11 cd04338 Rieske_RO_Alpha_Tic55 100.0 1.9E-30 4.2E-35 225.1 12.8 115 89-203 11-130 (134)
12 cd03531 Rieske_RO_Alpha_KSH Th 100.0 2.1E-29 4.5E-34 213.0 12.2 109 95-203 1-111 (115)
13 cd03480 Rieske_RO_Alpha_PaO Ri 100.0 3.7E-29 8E-34 218.0 11.3 113 91-203 13-134 (138)
14 cd03532 Rieske_RO_Alpha_VanA_D 100.0 6.4E-29 1.4E-33 210.4 11.9 110 92-202 2-113 (116)
15 cd03538 Rieske_RO_Alpha_AntDO 100.0 5E-29 1.1E-33 219.2 11.2 128 59-203 3-144 (146)
16 cd03541 Rieske_RO_Alpha_CMO Ri 100.0 1.1E-28 2.4E-33 209.1 11.4 108 95-202 1-115 (118)
17 cd03539 Rieske_RO_Alpha_S5H Th 100.0 1.6E-28 3.4E-33 211.6 10.6 108 96-203 1-127 (129)
18 cd03548 Rieske_RO_Alpha_OMO_CA 100.0 3.8E-28 8.3E-33 211.3 12.7 111 91-202 10-127 (136)
19 cd03472 Rieske_RO_Alpha_BPDO_l 99.9 7.3E-28 1.6E-32 207.2 11.2 113 91-203 4-126 (128)
20 cd03469 Rieske_RO_Alpha_N Ries 99.9 2.1E-27 4.6E-32 201.4 10.2 107 96-202 1-115 (118)
21 cd03535 Rieske_RO_Alpha_NDO Ri 99.9 1.1E-26 2.3E-31 198.8 11.3 110 94-203 1-121 (123)
22 cd03536 Rieske_RO_Alpha_DTDO T 99.9 1.3E-26 2.8E-31 198.2 11.0 108 96-203 1-119 (123)
23 cd03542 Rieske_RO_Alpha_HBDO R 99.9 1.3E-25 2.9E-30 191.7 11.3 108 96-203 1-121 (123)
24 cd03528 Rieske_RO_ferredoxin R 99.9 2.8E-25 6E-30 182.3 11.2 96 96-196 1-97 (98)
25 cd03474 Rieske_T4moC Toluene-4 99.9 1.5E-24 3.3E-29 181.3 12.3 102 96-202 1-103 (108)
26 cd03530 Rieske_NirD_small_Baci 99.9 1.4E-24 3E-29 178.3 11.3 97 96-197 1-98 (98)
27 TIGR02377 MocE_fam_FeS Rieske 99.9 4.7E-24 1E-28 176.2 11.4 100 95-198 1-101 (101)
28 cd03529 Rieske_NirD Assimilato 99.9 7.7E-24 1.7E-28 175.5 10.7 96 96-196 1-102 (103)
29 TIGR02378 nirD_assim_sml nitri 99.9 1.3E-23 2.7E-28 174.8 10.4 99 95-198 1-105 (105)
30 cd03478 Rieske_AIFL_N AIFL (ap 99.9 1.3E-23 2.8E-28 171.5 9.9 93 98-195 2-95 (95)
31 PRK09965 3-phenylpropionate di 99.9 2.3E-23 5E-28 173.6 10.7 99 96-200 3-103 (106)
32 PF00355 Rieske: Rieske [2Fe-2 99.9 7.2E-22 1.6E-26 161.6 8.9 93 95-192 1-97 (97)
33 PF13806 Rieske_2: Rieske-like 99.9 1.6E-21 3.5E-26 161.6 10.5 98 95-197 1-104 (104)
34 cd03467 Rieske Rieske domain; 99.9 3.2E-21 6.9E-26 158.2 10.6 95 96-194 1-97 (98)
35 PRK09511 nirD nitrite reductas 99.8 5.3E-21 1.1E-25 159.7 11.0 98 95-197 3-107 (108)
36 cd03477 Rieske_YhfW_C YhfW fam 99.8 4.8E-21 1E-25 155.0 9.3 87 99-190 2-88 (91)
37 COG2146 {NirD} Ferredoxin subu 99.8 8.3E-21 1.8E-25 157.8 10.9 101 94-198 3-105 (106)
38 cd03476 Rieske_ArOX_small Smal 99.8 4.2E-19 9.1E-24 152.0 10.2 95 98-197 5-114 (126)
39 cd08878 RHO_alpha_C_DMO-like C 99.8 5.9E-18 1.3E-22 154.0 13.5 171 223-400 5-195 (196)
40 cd03471 Rieske_cytochrome_b6f 99.8 3.2E-18 7E-23 145.6 10.6 91 106-201 21-114 (126)
41 TIGR02694 arsenite_ox_S arseni 99.7 4.7E-17 1E-21 139.7 9.8 94 98-196 8-115 (129)
42 cd03470 Rieske_cytochrome_bc1 99.7 1.2E-16 2.5E-21 136.9 10.3 92 101-196 5-125 (126)
43 cd03473 Rieske_CMP_Neu5Ac_hydr 99.7 7.9E-17 1.7E-21 132.2 8.1 72 102-174 14-89 (107)
44 cd00680 RHO_alpha_C C-terminal 99.7 8.2E-16 1.8E-20 138.9 14.4 161 222-400 3-186 (188)
45 cd08885 RHO_alpha_C_1 C-termin 99.6 2.8E-14 6.1E-19 130.6 15.7 162 221-399 3-187 (190)
46 PRK13474 cytochrome b6-f compl 99.6 8.4E-15 1.8E-19 132.8 10.1 88 106-198 73-163 (178)
47 cd08887 RHO_alpha_C_3 C-termin 99.6 5.3E-14 1.2E-18 127.9 13.1 161 222-400 4-183 (185)
48 cd08883 RHO_alpha_C_CMO-like C 99.5 1.2E-13 2.6E-18 125.1 14.5 160 221-400 3-173 (175)
49 cd08884 RHO_alpha_C_GbcA-like 99.5 4.2E-13 9.2E-18 124.7 14.7 167 215-399 7-202 (205)
50 cd08886 RHO_alpha_C_2 C-termin 99.5 2.2E-13 4.8E-18 124.3 12.3 160 221-399 3-181 (182)
51 TIGR01416 Rieske_proteo ubiqui 99.4 4.4E-13 9.4E-18 121.2 10.6 93 95-192 40-168 (174)
52 PF00848 Ring_hydroxyl_A: Ring 99.4 1.6E-12 3.5E-17 118.8 8.3 159 223-400 11-206 (209)
53 cd03475 Rieske_SoxF_SoxL SoxF 99.2 4.4E-11 9.5E-16 106.6 10.5 68 125-196 72-158 (171)
54 cd08880 RHO_alpha_C_ahdA1c-lik 99.0 1.5E-09 3.2E-14 102.3 8.6 138 221-379 3-187 (222)
55 PF08417 PaO: Pheophorbide a o 99.0 2.7E-09 5.8E-14 86.5 8.3 87 283-380 1-90 (92)
56 COG0723 QcrA Rieske Fe-S prote 98.9 2E-09 4.4E-14 97.8 6.4 75 117-195 83-163 (177)
57 cd08882 RHO_alpha_C_MupW-like 98.8 1.5E-08 3.3E-13 96.7 10.4 85 315-400 146-241 (243)
58 cd08879 RHO_alpha_C_AntDO-like 98.7 5.2E-08 1.1E-12 92.6 8.7 32 221-252 3-34 (237)
59 TIGR03171 soxL2 Rieske iron-su 98.6 6.9E-08 1.5E-12 93.4 7.1 69 125-197 173-276 (321)
60 cd08881 RHO_alpha_C_NDO-like C 98.6 1.3E-07 2.8E-12 88.0 8.6 131 221-375 8-156 (206)
61 KOG1671 Ubiquinol cytochrome c 98.6 6.8E-08 1.5E-12 86.8 4.8 75 101-175 91-191 (210)
62 PF11723 Aromatic_hydrox: Homo 98.4 1.3E-06 2.8E-11 81.1 8.6 186 214-404 21-239 (240)
63 KOG1336 Monodehydroascorbate/f 94.2 0.027 5.9E-07 57.9 2.2 38 139-176 1-39 (478)
64 PRK00888 ftsB cell division pr 61.1 16 0.00035 30.1 4.6 46 1-46 32-77 (105)
65 PRK14127 cell division protein 60.9 13 0.00029 30.9 4.0 24 3-26 44-67 (109)
66 PF04977 DivIC: Septum formati 56.6 21 0.00045 27.2 4.3 46 1-46 22-67 (80)
67 PF10080 DUF2318: Predicted me 52.7 89 0.0019 25.7 7.6 78 105-198 2-92 (102)
68 PF09740 DUF2043: Uncharacteri 51.4 9 0.00019 31.9 1.5 36 128-166 63-100 (110)
69 PF11572 DUF3234: Protein of u 48.4 4.5 9.8E-05 32.4 -0.6 52 90-145 3-54 (103)
70 TIGR02209 ftsL_broad cell divi 46.4 39 0.00084 26.2 4.5 44 2-46 30-73 (85)
71 PF08537 NBP1: Fungal Nap bind 46.3 37 0.00079 33.7 5.1 44 1-44 180-223 (323)
72 PRK06342 transcription elongat 45.6 35 0.00076 30.4 4.5 39 1-39 39-79 (160)
73 TIGR02449 conserved hypothetic 43.8 45 0.00098 25.1 4.1 37 1-37 26-62 (65)
74 PF12958 DUF3847: Protein of u 37.4 38 0.00082 27.0 3.0 67 3-69 1-71 (86)
75 PF12761 End3: Actin cytoskele 35.5 28 0.0006 32.1 2.3 21 1-21 101-121 (195)
76 KOG3132 m3G-cap-specific nucle 33.0 47 0.001 31.7 3.3 75 74-160 96-177 (325)
77 PF04698 Rab_eff_C: Rab effect 32.7 66 0.0014 35.3 4.8 35 3-37 587-621 (714)
78 KOG2270 Serine/threonine prote 32.1 1.1E+02 0.0023 31.8 5.8 38 107-144 167-208 (520)
79 PRK14549 50S ribosomal protein 31.9 1.1E+02 0.0024 23.2 4.7 41 1-41 17-62 (69)
80 PF05278 PEARLI-4: Arabidopsis 31.1 93 0.002 30.2 5.1 36 2-37 206-241 (269)
81 smart00352 POU Found in Pit-Oc 31.1 1E+02 0.0022 24.0 4.3 30 3-32 7-36 (75)
82 PF08606 Prp19: Prp19/Pso4-lik 30.7 1.4E+02 0.0031 22.8 5.0 29 1-30 27-55 (70)
83 cd00427 Ribosomal_L29_HIP Ribo 30.1 1.1E+02 0.0024 22.1 4.3 23 1-23 11-33 (57)
84 PF05265 DUF723: Protein of un 29.0 30 0.00066 25.6 1.1 16 151-166 30-45 (60)
85 PF14920 MTBP_C: MDM2-binding 25.3 29 0.00062 32.8 0.6 16 152-167 15-30 (251)
86 PRK14147 heat shock protein Gr 24.2 1.3E+02 0.0028 27.1 4.6 35 1-35 30-64 (172)
87 COG1645 Uncharacterized Zn-fin 23.7 62 0.0013 27.9 2.2 29 133-164 27-55 (131)
88 PF04420 CHD5: CHD5-like prote 23.4 93 0.002 27.6 3.5 17 4-20 41-57 (161)
89 COG3027 zapA Cell division pro 23.1 1.5E+02 0.0033 24.4 4.4 34 3-36 61-98 (105)
90 PRK09039 hypothetical protein; 22.5 1.5E+02 0.0032 29.8 5.1 35 3-37 123-157 (343)
91 PF04380 BMFP: Membrane fusoge 22.4 1.3E+02 0.0029 23.3 3.8 27 2-28 49-75 (79)
92 PRK10884 SH3 domain-containing 22.3 1.3E+02 0.0028 28.0 4.3 35 1-35 98-132 (206)
93 TIGR02497 yscI_hrpB_dom type I 22.2 2.1E+02 0.0046 19.3 4.1 34 3-36 2-38 (39)
94 PF15567 Imm19: Immunity prote 21.9 49 0.0011 26.4 1.2 46 92-138 31-77 (88)
95 PRK14139 heat shock protein Gr 21.0 1.6E+02 0.0035 26.9 4.6 35 1-35 44-78 (185)
96 PRK09039 hypothetical protein; 20.1 1.6E+02 0.0035 29.6 4.8 35 2-36 143-177 (343)
97 PRK14164 heat shock protein Gr 20.1 1.7E+02 0.0037 27.5 4.6 34 1-34 82-115 (218)
98 PRK14155 heat shock protein Gr 20.0 1.7E+02 0.0037 27.3 4.6 35 1-35 25-59 (208)
No 1
>PLN02281 chlorophyllide a oxygenase
Probab=100.00 E-value=2.1e-84 Score=660.22 Aligned_cols=410 Identities=77% Similarity=1.348 Sum_probs=351.9
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHhhhhhhhcCCCCCCc-ccccCCCCCCchhhhhhhccCCcccc
Q 015101 1 MKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGT-DQTCASPSTSKQSLDIVKGKLPRKSL 79 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~ 79 (413)
||||||+|||||+|||+|||+||||||++|+||++||+|+|++||+|++.++. .|+|+.++++ ...+.+.++..++++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 204 (536)
T PLN02281 126 VKKELAGLQEELSKAHQQVHISEARVSTALDKLAHMEELVNDRLLPGRVVTELDKPSSSTTASA-VELDREKTNTGAKSL 204 (536)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhccCCCccccccccccCCcCcc-hhhhhhhcccccccc
Confidence 68999999999999999999999999999999999999999999998877755 6776666655 456677777888999
Q ss_pred cccCCCCCccccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecCCC
Q 015101 80 NVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYH 159 (413)
Q Consensus 80 ~~~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyH 159 (413)
+++++++++..++++.||+||.++||++|+++.++++|++|+|||+.+|+++|+.|+|||||++|+.|.++++.|+||||
T Consensus 205 ~~~~p~~P~~~~lrn~Wy~Va~s~EL~~g~~~~v~llG~~IVL~R~~dG~v~A~~D~CPHRgaPLs~G~v~g~~L~CPYH 284 (536)
T PLN02281 205 NVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYH 284 (536)
T ss_pred cccCCCCCcchhhhcccEEEEEHHHCCCCCeEEEEECCEEEEEEECCCCeEEEEeCcCcCCCCccccceeeCCEEEeCCC
Confidence 99999999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCccccCCcccccccccccceeeeCCeEEEcCCCCCCCCCCCCCCCCCCceEeEEEEEEeecChhhhhhccCC
Q 015101 160 GWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLD 239 (413)
Q Consensus 160 gw~fd~~G~~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D 239 (413)
||+||.+|+|+.+|+.+..+.++++|||+|++|+||||++++++.+.+|.+..+.++.......+++++||++++||++|
T Consensus 285 GW~FD~dG~cv~iP~~~~~~~~l~sYPV~e~~GlVwV~lgd~~~aP~~p~ld~p~~~~~~~~~~~~~~~nwkllvENllD 364 (536)
T PLN02281 285 GWEYSTDGECKKMPSTKLLKVKIKSLPCLEQEGMIWIWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLD 364 (536)
T ss_pred CCEECCCCCEeeCCCCccccCCcceEeEEEECCEEEEEeCCCCCCCCCccccCcccceEEEEEEEEecCCHHHHHHhccc
Confidence 99999999999999876556889999999999999999987654445565554446665555678899999999999999
Q ss_pred CcccCccCccccccCCCCCceeeeecCCCCCCccccCCCccceecCCeEEEEEeeeeCCCCcCCCCcccccceeEEEEEe
Q 015101 240 LAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVC 319 (413)
Q Consensus 240 ~~H~~~~H~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 319 (413)
+||++|+|.++++..+..+..+....+...+.++|...+..++|.+||++...+++..+|...+......+.++..++.|
T Consensus 365 ~~H~~fvH~~t~g~~~~~p~~v~~~~~~~~~~p~~~~~pv~~~f~aP~~v~l~i~~~~~G~~~~~~~~~~~~~~~~~h~~ 444 (536)
T PLN02281 365 LAHAPFTHTSTFAKGWSVPSLVKFLTPTSGLQGYWDPYPIDMEFKPPCIVLSTIGISKPGKLEGKSTQQCATHLHQLHVC 444 (536)
T ss_pred cccccccCcccccCcccCCceeEEecccCCCCcccccCCceEEEECcEEEEEeeccccCCccccccccccccceEEEEEE
Confidence 99999999999998766665555444444445566554556889999999888888777764433333444567789999
Q ss_pred ecCCCCcEEEEeeeecchhhhccCchhHHHHHHHHHhHHHhhHHHHHHHHhhhccCCCCccccccCCCHHHHHHHHHHHH
Q 015101 320 LPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDA 399 (413)
Q Consensus 320 ~P~s~~~tr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~V~~ED~~ile~qq~~l~~~~~~~~~~~~~D~~~v~yRrwl~~ 399 (413)
||+++++||+||.+.+||..+.+..++...++..+...+|.||+.|+|+||+++......+++++++|+++++||||+++
T Consensus 445 TPeT~~sTryF~~~~Rnf~~~~~d~~~~~~~l~~~~~~vF~ED~~iLEaQQ~~i~~~~~~~~l~l~aD~~~v~~RRWl~~ 524 (536)
T PLN02281 445 LPSSKNKTRLLYRMSLDFAPILKNLPFMEHLWRHFAEQVLNEDLRLVLGQQERMLNGANIWNLPVAYDKLGVRYRLWRNA 524 (536)
T ss_pred EECCCCeEEEEEEecccCccccccccchHHHHHHHhhHhhHhHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHH
Confidence 99999999999999999977643444444546667889999999999999999998777888999999999999999999
Q ss_pred HHcCCCCCCCCC
Q 015101 400 LEKGAKQLPFMK 411 (413)
Q Consensus 400 l~~g~~~~p~~~ 411 (413)
+++|.+++||+.
T Consensus 525 ~~~~~~~~pf~~ 536 (536)
T PLN02281 525 VDRGDDKLPFSG 536 (536)
T ss_pred hhcccCCCCCCC
Confidence 999999999984
No 2
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=100.00 E-value=1.5e-50 Score=396.31 Aligned_cols=272 Identities=37% Similarity=0.765 Sum_probs=224.6
Q ss_pred cccccCceEEeeecCCC-CCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEecCC
Q 015101 89 NTRLKNFWFPVAFSTDL-KDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDG 167 (413)
Q Consensus 89 ~~~~~~~W~~v~~~~el-~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~~G 167 (413)
.....+.||+||+++|| ++|+++.++++|++|+|||+.+|+++|+.|.|||||++|+.|.++++.|+||||||+||.+|
T Consensus 66 ~~~~r~~WypVa~ssdL~~~g~~~~f~L~GepIVL~Rd~dGqv~Af~N~CPHRGapLSeG~v~~g~L~CPYHGW~FD~~G 145 (394)
T PLN00095 66 TADARAHWFPVAFAAGLRDEDALIAFDLFNVPWVLFRDADGEAGCIKDECAHRACPLSLGKLVDGKAQCPYHGWEYETGG 145 (394)
T ss_pred CCchhcCeEEEEEHHHCCCCCceEEEEECCEEEEEEECCCCCEEEEeccCCCCCCccccCcccCCEEEecCCCcEECCCC
Confidence 44568999999999999 67999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCccc--ccccccccceeeeCCeEEEcCCCCCCCC------------------CCCC-CCCCCCceEeEEEEEEe
Q 015101 168 KCEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDEPPTA------------------TIPC-LLPPSGFEIHAEIVMEL 226 (413)
Q Consensus 168 ~~~~~P~~~~--~~~~l~~~~v~~~~G~I~v~~~~~~~~~------------------~~p~-~~~~~~~~~~~~~~~~~ 226 (413)
+|+.+|+.+. .+.++++|||++++|+||||+++..+.. ..|. +.+.++|..+.+...++
T Consensus 146 ~C~~iP~~~~~~~~~~v~tYPV~e~dGlVwVw~G~~~p~dflg~~~~~e~~~~~~~~~~~P~~~~~~~gf~~~aev~~Dl 225 (394)
T PLN00095 146 ECAKMPSCKKFLKGVFADAAPVIERDGFIFLWAGESDPADFVGPEAACESIDDDVLAANEPGMFAPGEGFTPMAEVIADI 225 (394)
T ss_pred CEeeCCCccccccccccceEEEEEECCEEEEEeCCcchhhhccccccccccccchhhccCCcccCCCCCceEEEEEEEec
Confidence 9999997532 3467899999999999999998644321 2333 34446888777777899
Q ss_pred ecChhhhhhccCCCcc-cCccCcccccc----C---CCCCceeeeecCCCCCCccccCCCccceecCCeEEEEEeeeeC-
Q 015101 227 PIEHGLLLDNLLDLAH-APFTHTSTFAK----G---WSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISK- 297 (413)
Q Consensus 227 ~~nwk~~~EN~~D~~H-~~~~H~~t~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~- 297 (413)
++.|.+++||++|++| .+|+|+.||.. . +..+.... .....++.+.|++++++|+|.+||++.+++++.+
T Consensus 226 p~d~~~L~ENllD~aH~a~~~~t~tf~~~~~~r~~~~~~~~~~~-~~~~~~l~g~~~~~p~~~~F~ppc~~~s~i~l~~~ 304 (394)
T PLN00095 226 KLDADEVLERLLAIGERARREATVSFDVSDAKRGRDALFPVDGT-KIIAKVLRGGRDAVPQSATFKPACVIASTIALEDG 304 (394)
T ss_pred cccHHHHHHhhcCccccCCccCceeeecccccccccCccchhhh-hhhhhhheeecccCCcceeEcCceeeeeeeccccc
Confidence 9999999999999999 69999988851 1 11121111 1224467788999999999999999999999865
Q ss_pred CCCcCCCCcccccceeEEEEEeecCCCCcEEEEeeeecchhh---hccCchhHHHHHHHHHhHHHhhHHHHHHH
Q 015101 298 PGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFAS---VLKHVPFMQYLWRHFAEQVLNEDLRLVLG 368 (413)
Q Consensus 298 ~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~---~~~~~p~~~~~~~~~~~~V~~ED~~ile~ 368 (413)
||+.. .|..+++++|+|.|.++++||++++|+++|.. +.+.+|. ..|..+..+|+.||++++.+
T Consensus 305 ~g~~~-----~~~~~l~qlhvclP~~~G~tRll~R~~~dF~~~~~~~~~~~~--~~w~~~a~~vl~e~l~~v~~ 371 (394)
T PLN00095 305 PGGGD-----GTDMNVEQLHVCLPAKPGLCRLLFRLAFDFVAVPEGAQAAAG--DVWANLAMMVLKEELEDVRA 371 (394)
T ss_pred CCCCc-----cccceeeeEEEEEecCCCceEEEEeecccccccHHHhHhchH--HHHHHHHHHHHHHHHHHHhc
Confidence 55532 34568999999999999999999999999975 4555554 78899999999999998753
No 3
>PLN02518 pheophorbide a oxygenase
Probab=100.00 E-value=6.5e-50 Score=414.64 Aligned_cols=307 Identities=22% Similarity=0.437 Sum_probs=223.8
Q ss_pred cccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEc-CCCcEEEEecCCCCCCCCCCCCccc-CCeEecCCCCeEEecC
Q 015101 89 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTD 166 (413)
Q Consensus 89 ~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~-~~G~i~a~~n~CpHrg~~L~~g~~~-~~~l~CpyHgw~fd~~ 166 (413)
...+++.||+||.++||++|+++.++++|++|||||+ .+|+++||.|+|||||++|+.|.++ ++.|+||||||+||.+
T Consensus 84 ~f~~~~~Wy~Va~~~dL~~g~p~~~~llG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~~~g~L~CpYHGW~Fd~~ 163 (539)
T PLN02518 84 KFSWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGC 163 (539)
T ss_pred hhhhhhhCEEEEEHHHCCCCCeEEEEECCEEEEEEEECCCCeEEEEcccCcCcCCCcccceecCCCEEEcCCCCCEEcCC
Confidence 4577999999999999988999999999999999998 8999999999999999999999985 6799999999999999
Q ss_pred CCccccCCccc----------ccccccccceeeeCCeEEEcCCCCC----CCCCCCCC---CCCCCceEeEEEEEEeecC
Q 015101 167 GKCEKMPSTQL----------RNVKIKSLPCFEQEGMIWIWPGDEP----PTATIPCL---LPPSGFEIHAEIVMELPIE 229 (413)
Q Consensus 167 G~~~~~P~~~~----------~~~~l~~~~v~~~~G~I~v~~~~~~----~~~~~p~~---~~~~~~~~~~~~~~~~~~n 229 (413)
|+|+.+|+... ...++++|||+|++|+||||++++. +...+|.+ .+..+|... ....+++++
T Consensus 164 G~c~~IP~~~~~~~~~~~~~~~~a~v~sypv~e~~GlIwV~~~~~~~~~a~~~~~P~~~~~~~~~~~~~~-~~~~~~~~~ 242 (539)
T PLN02518 164 GSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWERAQATKPPMLPDEFDDPEFSTV-TIQRDLFYG 242 (539)
T ss_pred CCeeecccccccccccccccCcccccceEeEEEECCEEEEEeCCccccccccccCCCCcccccCCCceeE-EEEEEEecC
Confidence 99999997421 2357999999999999999998642 11233333 223455432 234688999
Q ss_pred hhhhhhccCCCcccCccCccccccCCC-CCceeeeec-CCCCCCcccc-CCCccceecCCeEEEEEeeeeCCCCcCCCCc
Q 015101 230 HGLLLDNLLDLAHAPFTHTSTFAKGWS-VPSLVKFLT-PASGLQGYWD-PYPIDMEFRPPCMVLSTIGISKPGKLEGQNT 306 (413)
Q Consensus 230 wk~~~EN~~D~~H~~~~H~~t~~~~~~-~~~~~~~~~-~~~~~~~~~~-~~~~~~~f~~P~~~~~~~~~~~~g~~~~~~~ 306 (413)
|++++||++|++|++|+|.+++|.... .+...+... ...++.+.+. .......|.+||++...+++.. + .+..
T Consensus 243 ~~~l~EN~lD~sH~pfvH~~~~G~~~~~~~~~~~v~~~~~~Gf~g~~~~~~~~~~~F~~P~~~~~~~~~~~-~-~~~~-- 318 (539)
T PLN02518 243 YDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKVESSGPWGFAGANSDNPRITAKFVAPCYYINKIEIDT-K-LPIV-- 318 (539)
T ss_pred chhHHHhCCccchhceeccccccCccccccccceEEEcCCCcccccccCCCceEEEEECCeEEEEeeeeec-c-ccCC--
Confidence 999999999999999999999986421 121111111 1122323221 1224578999998776655431 1 0000
Q ss_pred ccccceeEEEEEeecCCCCcEEEEeeeecchhhh-------ccCchhHHHHHHH-HHhHHHhhHHHHHHHHhhhccCC-C
Q 015101 307 RQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASV-------LKHVPFMQYLWRH-FAEQVLNEDLRLVLGQQERMNNG-A 377 (413)
Q Consensus 307 ~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~-------~~~~p~~~~~~~~-~~~~V~~ED~~ile~qq~~l~~~-~ 377 (413)
......+..+++++|+++++||++|.+.+||... .+.+| .++.+ -..+|++||+.++++|++.+... .
T Consensus 319 ~~~~~~~~~~~~~tP~s~g~tr~f~~~~Rnf~~~~~~~~~~~k~~P---rW~~h~~~n~Vl~~D~~~lh~Qe~~~~~~~~ 395 (539)
T PLN02518 319 GDQKWVIWICSFNVPMAPGKTRSIVCSARNFFQFSMPGPAWWQLVP---RWYEHWTSNKVYDGDMIVLQGQEKIFLSKSG 395 (539)
T ss_pred CCcceEEEEEEEEEECCCCeEEEEEEecccchhccccchhhhhcCc---hHHHHhhhccchHhHHHHHHHHHHHHhhccc
Confidence 0011234456788999999999999998887322 22233 22222 25789999999999998876442 1
Q ss_pred -----------CccccccCCCHHHHHHHHHHHHHHcC
Q 015101 378 -----------NVWNLPVGYDKLGVRYRLWRDALEKG 403 (413)
Q Consensus 378 -----------~~~~~~~~~D~~~v~yRrwl~~l~~g 403 (413)
..+++|+++|+.+++||||+++++.|
T Consensus 396 e~~~~v~~~w~k~~~~Pt~aD~~viayR~Wl~~~g~g 432 (539)
T PLN02518 396 EGSADVNAQYTKLTFTPTQADRFVLAFRNWLRRHGNS 432 (539)
T ss_pred cccccchhhhhhhccCCCchhHHHHHHHHHHHHhCcC
Confidence 12368999999999999999998653
No 4
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]
Probab=100.00 E-value=3.2e-42 Score=347.13 Aligned_cols=315 Identities=24% Similarity=0.374 Sum_probs=219.2
Q ss_pred cccCCCCCCchhhhhhhccCCcccccccCCCCCccccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEe
Q 015101 55 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQ 134 (413)
Q Consensus 55 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~ 134 (413)
..+...++|+++|+.+...+|. +.||+||+++||+++++++++++|+++||+|+.||+++||.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-----------------~~Wy~v~~~~el~~~~~~~~~i~g~~lvi~R~~dg~~~al~ 66 (367)
T COG4638 4 RLPPPFYTDPELFQLELERIFY-----------------KHWYVVAHSSELPKPDPLTVRIGGEPLVVVRDKDGQVHALA 66 (367)
T ss_pred cCCCccccCHHHHHHHHHHhhh-----------------hCEEEEccHHHCCCCCceeEEEcCeEEEEEECCCCCEEEEe
Confidence 3566788999999999999885 47999999999998899999999999999999999999999
Q ss_pred cCCCCCCCCCCCCcccC-CeEecCCCCeEEecCCCccccCC--ccc----ccccccccceeeeCCeEEEcCCCCCCC---
Q 015101 135 NTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEKMPS--TQL----RNVKIKSLPCFEQEGMIWIWPGDEPPT--- 204 (413)
Q Consensus 135 n~CpHrg~~L~~g~~~~-~~l~CpyHgw~fd~~G~~~~~P~--~~~----~~~~l~~~~v~~~~G~I~v~~~~~~~~--- 204 (413)
|.|||||++|+.|++.+ +.|+||||||+||.+|+|+++|. ... ...++++||+++++|+||||+++++++
T Consensus 67 d~C~HRga~Ls~g~~~~~~~l~CpyHgW~y~~~G~~~~ip~~~~~~~~~~~~~~l~~~~~~~~~G~Iwi~~~~~~~~~~~ 146 (367)
T COG4638 67 DVCPHRGARLSEGRVGGKGRLTCPYHGWTYDLDGRLRGVPARGYPLDFDKSEHGLKRYPVEERYGFIWIWLGDPPPAAEA 146 (367)
T ss_pred ccCCCCCchhccccCCCCceEecCCCceEECCCCcEecCCccccCCCCCHhhCCccccceEEEccEEEEecCCCccChhH
Confidence 99999999999999887 89999999999999999999994 221 236899999999999999999987633
Q ss_pred CCCCCCC-CCCCceEe-EEEEEEeecChhhhhhccCC-CcccCccCccccccCCCCC---ceeee----------ecCCC
Q 015101 205 ATIPCLL-PPSGFEIH-AEIVMELPIEHGLLLDNLLD-LAHAPFTHTSTFAKGWSVP---SLVKF----------LTPAS 268 (413)
Q Consensus 205 ~~~p~~~-~~~~~~~~-~~~~~~~~~nwk~~~EN~~D-~~H~~~~H~~t~~~~~~~~---~~~~~----------~~~~~ 268 (413)
...|... ...++... +.....+++|||+++||++| +||++++|+++.+...... ..+.. ..|..
T Consensus 147 ~~~p~~~~~~~~~~~~~~~~~~~~~~nwk~~vEn~~d~~~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 226 (367)
T COG4638 147 FLPPAEPYEDDRSRLGGGSFTINVPGNWKLAVENNLDDPYHVPFVHPGLLGTEPHTEVGAYDVTAGGHWDVILATGNPFF 226 (367)
T ss_pred hcccccccccccccccCceEEEEecccceEEeeccCCccccccccCHHHhcccccccccccccccCCceeeeeccCCCcc
Confidence 1112222 22233333 45567889999999998888 9999999998776432100 00000 00000
Q ss_pred CCCccc-------cCC-----CccceecCCeE-EEEEeeeeCCCCcCCCCcccccceeEEEEEeecCCCCcEEEEeeeec
Q 015101 269 GLQGYW-------DPY-----PIDMEFRPPCM-VLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSL 335 (413)
Q Consensus 269 ~~~~~~-------~~~-----~~~~~f~~P~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~ 335 (413)
...+.. ... ...+.+..|+. +... ............|+++++|.+......
T Consensus 227 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----------------~~~~~~~~~~~~p~~~~~~~~~~~~~~ 290 (367)
T COG4638 227 QPLGSEASSYGFDGNYEVHVPGAYLLFLYPNSTVWNH----------------VTVDDVIVFFVQPIDEDETMVTLVWLV 290 (367)
T ss_pred CCcchhhhccccccccccccCceeEEEEcCCchheee----------------ecccceeEEEEEecCCceeEEEeeeee
Confidence 000000 000 00011222221 0000 011123455679999999998865432
Q ss_pred chhhhccCchhHHHHHHHHHhHHHhhHHHHHHHHhhhccCCCC-ccccccCCCHHHHHHHHHHHHHHcC
Q 015101 336 DFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKG 403 (413)
Q Consensus 336 ~~~~~~~~~p~~~~~~~~~~~~V~~ED~~ile~qq~~l~~~~~-~~~~~~~~D~~~v~yRrwl~~l~~g 403 (413)
... .......+...+..+...+++||..|+|.||.++.+... ....+...|...+++++|+.+....
T Consensus 291 ~~~-~~~~~~~~~~~~~~~~~~~~~qD~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (367)
T COG4638 291 LPD-LVEGVDYFDKLIRRFRQEILDQDREILENQQPGRLSPALERGPYPIREDAGSVQFRRWLAERLVL 358 (367)
T ss_pred ccc-hhhHHHHHHHHHHHHhccCcHHHHHHHHHHhcccccccccCCCccccccchhhHHHHHHHHHHhh
Confidence 111 111222334455567788999999999999997666544 3446788899999999998655433
No 5
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=100.00 E-value=1.2e-39 Score=331.16 Aligned_cols=181 Identities=19% Similarity=0.301 Sum_probs=155.2
Q ss_pred ccccCCCCCCchhhhhhhccCCcccccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEE
Q 015101 54 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 132 (413)
Q Consensus 54 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~i~a 132 (413)
..++.+.|||+++|+.|+++||. +.|++||++++|+ +|+++++.+++++|+|+|+.||+++|
T Consensus 14 ~~v~~~~ytd~~if~~E~~~IF~-----------------~~W~~v~h~selp~~GDy~t~~ig~~pviv~R~~dG~i~a 76 (438)
T TIGR03228 14 FRIARDMFTEPELFDLEMELIFE-----------------KNWIYACHESELPNNHDFVTVRAGRQPMIVTRDGKGELHA 76 (438)
T ss_pred eecChheECCHHHHHHHHHHHHh-----------------hCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEE
Confidence 35778899999999999999986 4599999999998 59999999999999999999999999
Q ss_pred EecCCCCCCCCCCC-CcccCCeEecCCCCeEEecCCCccccCCcc-------cccccccccceeeeCCeEEEcCCCCCCC
Q 015101 133 VQNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ-------LRNVKIKSLPCFEQEGMIWIWPGDEPPT 204 (413)
Q Consensus 133 ~~n~CpHrg~~L~~-g~~~~~~l~CpyHgw~fd~~G~~~~~P~~~-------~~~~~l~~~~v~~~~G~I~v~~~~~~~~ 204 (413)
|.|+|||||++|+. +.++.+.|+||||||+|+.||+|+++|... ....+|++++|.++.|+||++++++++
T Consensus 77 ~~N~C~HRGa~L~~~~~Gn~~~~~CPYHgW~y~~dG~L~~vp~~~~y~~~fd~~~~~L~~~rv~~y~GfIFv~l~~~a~- 155 (438)
T TIGR03228 77 LVNACQHRGATLTRVGKGNQSTFTCPFHAWCYKSDGRLVKVKAPGEYCEGFDKATRGLKKARIASYRGFVFVSLDVAAT- 155 (438)
T ss_pred EcccCCCCCCccccCCccccCEEEcCCCCCcccCCCceeecCcccccCCCCChhhCCCcceeEEEECCEEEEEeCCCCC-
Confidence 99999999999996 788888999999999999999999998542 135778899999999999999987642
Q ss_pred CCCCCCCCC--------------CCceEe-EEEEEEeecChhhhhhccCCCcccCccCccccc
Q 015101 205 ATIPCLLPP--------------SGFEIH-AEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 252 (413)
Q Consensus 205 ~~~p~~~~~--------------~~~~~~-~~~~~~~~~nwk~~~EN~~D~~H~~~~H~~t~~ 252 (413)
.++++++++ .++++. +...+.++||||+.+||++|+||++++|.++++
T Consensus 156 ~~l~e~lg~~~~~ld~~~~~~~~g~le~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~ 218 (438)
T TIGR03228 156 DSLEDFLGDARVFLDMMVAQSPTGELEVLPGKSAYTYAGNWKLQNENGLDGYHVSTVHYNYVA 218 (438)
T ss_pred CCHHHHhhhHHHHHHHHhhccCcCceEEecceEEEEeCCchHHHHHhccccccchhhChhhHh
Confidence 245555432 124433 345788999999999999999999999988754
No 6
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=100.00 E-value=5.9e-40 Score=333.82 Aligned_cols=179 Identities=20% Similarity=0.263 Sum_probs=151.7
Q ss_pred cccCCCCCCchhhhhhhccCCcccccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEE
Q 015101 55 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCV 133 (413)
Q Consensus 55 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~i~a~ 133 (413)
.++...|||+++|+.|+++||. +.|+.||++++|+ +|+++++.++|++|+|+|+.+|+++||
T Consensus 15 ~~~~~~Ytd~~~f~~E~~~IF~-----------------~~W~~v~~~selp~~gd~~t~~~~~~~vvv~R~~dG~i~af 77 (433)
T TIGR03229 15 RCKREMFTDPELFDLEMKHIFE-----------------GNWIYLAHESQIPNNNDYYTTYMGRQPIFIARNKDGELNAF 77 (433)
T ss_pred cCChhhcCCHHHHHHHHHHHhh-----------------hCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCcEEEE
Confidence 5788899999999999999996 4599999999998 689999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCc-ccCCeEecCCCCeEEecCCCccccCCccc----------ccccccccc-eeeeCCeEEEcCCCC
Q 015101 134 QNTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQL----------RNVKIKSLP-CFEQEGMIWIWPGDE 201 (413)
Q Consensus 134 ~n~CpHrg~~L~~g~-~~~~~l~CpyHgw~fd~~G~~~~~P~~~~----------~~~~l~~~~-v~~~~G~I~v~~~~~ 201 (413)
.|+|||||++|+.+. ++++.|+||||||+||.||+|+++|.... ...+|++++ ++.+.|||||+++++
T Consensus 78 ~N~C~HRga~L~~~~~g~~~~~~CPyHgW~f~~~G~l~~vP~~~~~~~~~~fd~~~~~~L~~v~rve~y~GfIFv~l~~~ 157 (433)
T TIGR03229 78 INACSHRGAMLCRHKRGNKTTYTCPFHGWTFNNSGKLLKVKDPEDAGYPECFNKDGSHDLKKVARFESYRGFLFGSLNPD 157 (433)
T ss_pred eCcCCCCCCCcccccccCCCEEEcCCCCCEecCCcceEeCCCcccccCccccCcHhhcCCccceEEEEECCEEEEEcCCC
Confidence 999999999999874 56779999999999999999999987321 135799996 566789999999876
Q ss_pred CCCCCCCCCCCC-------------CCceEe-EEEEEEeecChhhhhhccCCCcccCccCccccc
Q 015101 202 PPTATIPCLLPP-------------SGFEIH-AEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 252 (413)
Q Consensus 202 ~~~~~~p~~~~~-------------~~~~~~-~~~~~~~~~nwk~~~EN~~D~~H~~~~H~~t~~ 252 (413)
++ ++++++++ .++... +...++++||||+++||++|+||++++|.+++.
T Consensus 158 ~~--~l~e~Lg~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~ 220 (433)
T TIGR03229 158 VL--PLEEHLGETAKIIDMIVDQSPDGLEVLRGSSTYTYEGNWKLQAENGADGYHVSAVHWNYAA 220 (433)
T ss_pred CC--CHHHHhhhHHHHHHHHhhcCcCCCeEEeeeEEEEecCchhhhHHhccCcccchhhcccHHH
Confidence 54 45555432 233333 345788999999999999999999999987654
No 7
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=99.97 E-value=1.3e-31 Score=230.84 Aligned_cols=123 Identities=65% Similarity=1.381 Sum_probs=113.8
Q ss_pred ccCCCCCccccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecCCCC
Q 015101 81 VSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHG 160 (413)
Q Consensus 81 ~~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHg 160 (413)
+.|++.++...+++.|++|+++++|++|+++.++++|++++|+|+.+|+++|+.|.|||||++|+.|.++++.|+|||||
T Consensus 3 ~~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~v~g~~l~l~r~~~g~v~A~~n~CpH~g~~L~~G~~~~~~i~CP~Hg 82 (129)
T cd04337 3 VLGSSLELEPGLRNFWYPVEFSKDLKMDTMVPFELFGQPWVLFRDEDGTPGCIRDECAHRACPLSLGKVIEGRIQCPYHG 82 (129)
T ss_pred ccccCccccchhhCccEEEEEHHHCCCCCeEEEEECCcEEEEEECCCCcEEEEeCcCCCCcCCcccCcEeCCEEEeCCCC
Confidence 34677888999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred eEEecCCCccccCCcccccccccccceeeeCCeEEEcCCCCCC
Q 015101 161 WEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 203 (413)
Q Consensus 161 w~fd~~G~~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~~~~~~ 203 (413)
|+||.+|+|+.+|..+....+|++||+++++|+|||++++++|
T Consensus 83 w~Fd~tG~~~~~P~~~~~~~~l~~y~v~v~~g~V~V~~~~~~p 125 (129)
T cd04337 83 WEYDGDGECTKMPSTKCLNVGIAALPCMEQDGMIWVWPGDDPP 125 (129)
T ss_pred CEECCCCCEEeCCcCCCccCCcceEeEEEECCEEEEEcCCCCC
Confidence 9999999999999765445689999999999999999987654
No 8
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=99.97 E-value=2e-31 Score=235.34 Aligned_cols=132 Identities=21% Similarity=0.361 Sum_probs=117.3
Q ss_pred ccCCCCCCchhhhhhhccCCcccccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEEe
Q 015101 56 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQ 134 (413)
Q Consensus 56 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~i~a~~ 134 (413)
+++..|+|+++|+.|++++|+ .+.|++||++++|+ +|+++++.++|++|+|+|+.+|+++|+.
T Consensus 2 ~~~~~y~d~~~~~~E~~~if~----------------~~~W~~v~~~~el~~~g~~~~~~i~g~~iiv~r~~~g~v~A~~ 65 (150)
T cd03545 2 VPYKVFTDRAYFDREQERIFR----------------GKTWSYVGLEAEIPNAGDFKSTFVGDTPVVVTRAEDGSLHAWV 65 (150)
T ss_pred CChhhccCHHHHHHHHHhhhC----------------CCceEEEEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEc
Confidence 467789999999999999985 14599999999998 5999999999999999999899999999
Q ss_pred cCCCCCCCCCCCCc-ccCCeEecCCCCeEEecCCCccccCCcc-------------cccccccccceeeeCCeEEEcCCC
Q 015101 135 NTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQ-------------LRNVKIKSLPCFEQEGMIWIWPGD 200 (413)
Q Consensus 135 n~CpHrg~~L~~g~-~~~~~l~CpyHgw~fd~~G~~~~~P~~~-------------~~~~~l~~~~v~~~~G~I~v~~~~ 200 (413)
|+|||||++|+.|. ++++.|+||||||+||++|+|+.+|..+ ....+|++|+|.+++|+|||++++
T Consensus 66 n~CpHrg~~L~~g~~g~~~~i~CP~Hgw~Fdl~G~~~~ip~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~ifv~l~~ 145 (150)
T cd03545 66 NRCAHRGALVCRERRGNDGSLTCVYHQWAYDLKGNLKGVPFRRGLKGQGGMPKDFDMKQHGLEKLRVETVGGLVFASFSD 145 (150)
T ss_pred ccCcCCCCEecccccCCCCEEECCCCCCEECCCCCEEECccccccccccccccCcCHHHCCCcceeEeEECCEEEEEeCC
Confidence 99999999999874 4567999999999999999999999642 124689999999999999999987
Q ss_pred CCC
Q 015101 201 EPP 203 (413)
Q Consensus 201 ~~~ 203 (413)
+++
T Consensus 146 ~~~ 148 (150)
T cd03545 146 EVE 148 (150)
T ss_pred CCC
Confidence 643
No 9
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=99.97 E-value=5.9e-31 Score=231.13 Aligned_cols=132 Identities=33% Similarity=0.714 Sum_probs=117.6
Q ss_pred ccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecC
Q 015101 79 LNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCP 157 (413)
Q Consensus 79 ~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~Cp 157 (413)
+..+|+.+++...+.+.|++|+.+++|+ +|+++.+.++|.+++|+|+.+|+++|+.|+|||||++|+.|.+.++.|+||
T Consensus 5 ~~~~~~~~~~~~~~~~~W~~v~~~~eL~~~g~~~~~~~~g~~i~v~r~~~G~v~A~~n~CpHrG~~L~~G~~~~~~i~CP 84 (144)
T cd03479 5 LTRVGPGTPMGELLRRYWQPVALSSELTEDGQPVRVRLLGEDLVAFRDTSGRVGLLDEHCPHRGASLVFGRVEECGLRCC 84 (144)
T ss_pred eeecCCCCchhhHhhCceEEEEEHHHCCCCCCEEEEEECCcEEEEEEeCCCCEEEEcCcCCCCCCcccCCcccCCEEEcc
Confidence 3467899999999999999999999999 699999999999999999999999999999999999999999888999999
Q ss_pred CCCeEEecCCCccccCCccc-----ccccccccceeeeCCeEEEcCCCCCCCCCCCCC
Q 015101 158 YHGWEYSTDGKCEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCL 210 (413)
Q Consensus 158 yHgw~fd~~G~~~~~P~~~~-----~~~~l~~~~v~~~~G~I~v~~~~~~~~~~~p~~ 210 (413)
||||+||.+|+|+.+|+... ...+|++|+|++++|+|||++++..+.+++|++
T Consensus 85 ~Hgw~F~~~G~~~~~P~~~~~~~~~~~~~l~~~~v~~~~G~I~V~~~~~~~~p~~~~~ 142 (144)
T cd03479 85 YHGWKFDVDGQCLEMPSEPPDSQLKQKVRQPAYPVRERGGLVWAYMGPAEEAPEFPRY 142 (144)
T ss_pred CCCcEECCCCCEEECCCCccccCCccccCcceEeEEEECCEEEEECCCCCCCCCCCCC
Confidence 99999999999999997542 246799999999999999999864433345543
No 10
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.
Probab=99.97 E-value=9.1e-31 Score=223.15 Aligned_cols=109 Identities=33% Similarity=0.739 Sum_probs=99.8
Q ss_pred CceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEecCCCccccC
Q 015101 94 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 173 (413)
Q Consensus 94 ~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~~G~~~~~P 173 (413)
..||+|+.++||+ ++++.+++.|++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|
T Consensus 2 ~~W~~v~~~~~l~-~~~~~~~~~g~~ivl~r~~~g~v~a~~n~CpHrg~~Ls~G~v~~~~l~CpyHGw~Fd~~G~~~~iP 80 (123)
T cd03537 2 ASWYVAMRSDDLK-DKPTELTLFGRPCVAWRGATGRAVVMDRHCSHLGANLADGRVKDGCIQCPFHHWRYDEQGQCVHIP 80 (123)
T ss_pred CcEEEEEEHHHcC-CCcEEEEECCeEEEEEEccCCEEEEEcCCCCCCCCCccCCEEeCCEEECCCCCCEECCCCCEEECC
Confidence 4699999999996 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cccc---------ccccccccceeeeCCeEEEcCCCCCC
Q 015101 174 STQL---------RNVKIKSLPCFEQEGMIWIWPGDEPP 203 (413)
Q Consensus 174 ~~~~---------~~~~l~~~~v~~~~G~I~v~~~~~~~ 203 (413)
+... ...++++|||+|++|+||||++++.|
T Consensus 81 ~~~~~~~~~~~~p~~~~~~~~pv~e~~G~Vwv~~g~~~~ 119 (123)
T cd03537 81 GHSTAVRRLEPVPRGARQPTLVTAERYGYVWVWYGSPQP 119 (123)
T ss_pred CCcccccccccCCcccccccEeEEEECCEEEEEcCCCCc
Confidence 7431 24689999999999999999987654
No 11
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=99.97 E-value=1.9e-30 Score=225.07 Aligned_cols=115 Identities=30% Similarity=0.839 Sum_probs=104.8
Q ss_pred cccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEecCCC
Q 015101 89 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 168 (413)
Q Consensus 89 ~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~~G~ 168 (413)
...+++.|++|+.++||++|..+.++++|++|+|+|+.+|+++||.|+|||||++|+.|.+.++.|+||||||+||.+|+
T Consensus 11 ~~~~~~~W~~v~~~~el~~~~~~~~~v~g~~ivl~r~~~G~v~A~~n~CpHrga~L~~G~~~~~~i~CP~Hgw~Fd~~G~ 90 (134)
T cd04338 11 EYDWREEWYPLYLLKDVPTDAPLGLSVYDEPFVLFRDQNGQLRCLEDRCPHRLAKLSEGQLIDGKLECLYHGWQFGGEGK 90 (134)
T ss_pred ccccccCcEEEEEHHHCCCCCCEEEEECCceEEEEEcCCCCEEEEcCcCCCCcCcccCCeecCCEEEccCCCCEECCCCC
Confidence 45678999999999999988889999999999999998999999999999999999999998899999999999999999
Q ss_pred ccccCCccc-----ccccccccceeeeCCeEEEcCCCCCC
Q 015101 169 CEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPP 203 (413)
Q Consensus 169 ~~~~P~~~~-----~~~~l~~~~v~~~~G~I~v~~~~~~~ 203 (413)
|+.+|.... ...+|++|||++++|+|||++++.++
T Consensus 91 ~~~~P~~~~~~~~~~~~~l~~y~v~~~~G~V~V~~~~~~~ 130 (134)
T cd04338 91 CVKIPQLPADAKIPKNACVKSYEVRDSQGVVWMWMSEATP 130 (134)
T ss_pred EEECCCCCccCCCCcccCcceEeEEEECCEEEEEcCCCCC
Confidence 999997531 24669999999999999999987654
No 12
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=99.96 E-value=2.1e-29 Score=213.04 Aligned_cols=109 Identities=25% Similarity=0.638 Sum_probs=101.1
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEecCCCccccCC
Q 015101 95 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPS 174 (413)
Q Consensus 95 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~~G~~~~~P~ 174 (413)
.|++|+.++||++|+++.+++.|++++|+|+.+|+++|+.|+|||||++|+.|.+.++.|+||||||+||.+|+|+.+|.
T Consensus 1 gW~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~ga~L~~G~~~~~~i~CP~Hg~~fd~~G~~~~~p~ 80 (115)
T cd03531 1 GWHCLGLARDFRDGKPHGVEAFGTKLVVFADSDGALNVLDAYCRHMGGDLSQGTVKGDEIACPFHDWRWGGDGRCKAIPY 80 (115)
T ss_pred CcEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCccCcccCCEEECCCCCCEECCCCCEEECCc
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccc--ccccccccceeeeCCeEEEcCCCCCC
Q 015101 175 TQL--RNVKIKSLPCFEQEGMIWIWPGDEPP 203 (413)
Q Consensus 175 ~~~--~~~~l~~~~v~~~~G~I~v~~~~~~~ 203 (413)
.+. ...++++||+++++|+|||+++++..
T Consensus 81 ~~~~p~~~~l~~ypv~~~~g~v~v~~~~~~~ 111 (115)
T cd03531 81 ARRVPPLARTRAWPTLERNGQLFVWHDPEGN 111 (115)
T ss_pred ccCCCcccccceEeEEEECCEEEEECCCCCC
Confidence 542 24678999999999999999987643
No 13
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=99.96 E-value=3.7e-29 Score=218.04 Aligned_cols=113 Identities=30% Similarity=0.797 Sum_probs=102.0
Q ss_pred cccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcC-CCcEEEEecCCCCCCCCCCCCccc-CCeEecCCCCeEEecCCC
Q 015101 91 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK-DGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGK 168 (413)
Q Consensus 91 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~-~G~i~a~~n~CpHrg~~L~~g~~~-~~~l~CpyHgw~fd~~G~ 168 (413)
.+++.|++|+.++||++|+++.+++.|++|+|+|+. +|+++|+.|+|||||++|+.|.+. ++.|+||||||+||.+|+
T Consensus 13 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~dG~~~A~~n~CpHrga~L~~G~~~~~~~i~CP~Hgw~Fd~tG~ 92 (138)
T cd03480 13 DWREVWYPVAYVEDLDPSRPTPFTLLGRDLVIWWDRNSQQWRAFDDQCPHRLAPLSEGRIDEEGCLECPYHGWSFDGSGS 92 (138)
T ss_pred CCccceEEEEEHHHCCCCCcEEEEECCeeEEEEEECCCCEEEEEcCCCcCCcCccccceEcCCCEEEeCCCCCEECCCCC
Confidence 457889999999999999999999999999999986 999999999999999999999875 469999999999999999
Q ss_pred ccccCCccc-------ccccccccceeeeCCeEEEcCCCCCC
Q 015101 169 CEKMPSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEPP 203 (413)
Q Consensus 169 ~~~~P~~~~-------~~~~l~~~~v~~~~G~I~v~~~~~~~ 203 (413)
|+.+|.... ...+|++|||++++|+|||++++.++
T Consensus 93 ~~~~P~~~~~g~~~~~~~~~l~~ypv~v~~g~V~V~~~~~~~ 134 (138)
T cd03480 93 CQRIPQAAEGGKAHTSPRACVASLPTAVRQGLLFVWPGEPEN 134 (138)
T ss_pred EEECCCCccccccCCCcccccceEeEEEECCEEEEecCChHh
Confidence 999997532 24679999999999999999987543
No 14
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=99.96 E-value=6.4e-29 Score=210.44 Aligned_cols=110 Identities=35% Similarity=0.819 Sum_probs=101.7
Q ss_pred ccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEecCCCccc
Q 015101 92 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEK 171 (413)
Q Consensus 92 ~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~~G~~~~ 171 (413)
+++.|+++|.++||+ |+++.+.+.|.+++|+|+.+|+++|++|+|||||++|+.|.+.++.|+||||||+||.+|+|+.
T Consensus 2 ~~~~W~~v~~~~el~-~~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~g~~L~~G~~~~~~i~Cp~Hg~~fd~~G~~~~ 80 (116)
T cd03532 2 PRNAWYVAAWADELG-DKPLARTLLGEPVVLYRTQDGRVAALEDRCPHRSAPLSKGSVEGGGLVCGYHGLEFDSDGRCVH 80 (116)
T ss_pred cCCcEEEEEEHHHcC-CCcEEEEECCceEEEEECCCCCEEEeCCcCCCCCCCccCCcccCCEEEeCCCCcEEcCCCCEEe
Confidence 567899999999998 8999999999999999998999999999999999999999998899999999999999999999
Q ss_pred cCCcc--cccccccccceeeeCCeEEEcCCCCC
Q 015101 172 MPSTQ--LRNVKIKSLPCFEQEGMIWIWPGDEP 202 (413)
Q Consensus 172 ~P~~~--~~~~~l~~~~v~~~~G~I~v~~~~~~ 202 (413)
+|... ....+|++|||++++|+|||++++++
T Consensus 81 ~p~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~ 113 (116)
T cd03532 81 MPGQERVPAKACVRSYPVVERDALIWIWMGDAA 113 (116)
T ss_pred CCCCCCCCCccccccCCEEEECCEEEEEcCCcc
Confidence 99864 23568999999999999999998653
No 15
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=99.96 E-value=5e-29 Score=219.20 Aligned_cols=128 Identities=20% Similarity=0.369 Sum_probs=112.6
Q ss_pred CCCCCchhhhhhhccCCcccccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEEecCC
Q 015101 59 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTC 137 (413)
Q Consensus 59 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~C 137 (413)
..|+|+++|+.|++++|. +.|++|++.++|+ +|++++++++|++|+|+|+.+|+++|+.|+|
T Consensus 3 ~~y~~~~~~~~e~~~i~~-----------------~~W~~v~~~~elp~~G~~~~~~i~g~~i~v~r~~~g~v~A~~n~C 65 (146)
T cd03538 3 DVYTDPEIFALEMERLFG-----------------NAWIYVGHESQVPNPGDYITTRIGDQPVVMVRHTDGSVHVLYNRC 65 (146)
T ss_pred ceEcCHHHHHHHHHHHhh-----------------cCCEEEEEHHHCCCCCCEEEEEECCeeEEEEECCCCCEEEEeccC
Confidence 458999999999999985 5599999999998 6999999999999999999999999999999
Q ss_pred CCCCCCCCCC-ccc-CCeEecCCCCeEEecCCCccccCCccc----------cccccccc-ceeeeCCeEEEcCCCCCC
Q 015101 138 AHRACPLHLG-SVN-EGRIQCPYHGWEYSTDGKCEKMPSTQL----------RNVKIKSL-PCFEQEGMIWIWPGDEPP 203 (413)
Q Consensus 138 pHrg~~L~~g-~~~-~~~l~CpyHgw~fd~~G~~~~~P~~~~----------~~~~l~~~-~v~~~~G~I~v~~~~~~~ 203 (413)
||||++|+.+ .++ ++.|+||||||+||.||+|+.+|..+. ...+|+++ .|++++|||||++++++|
T Consensus 66 pHrg~~L~~~~~g~~~~~i~CP~Hgw~Fd~~G~~~~~p~~~~~~~~~~~~~~~~~~L~~~~~v~~~~g~ifv~~~~~~~ 144 (146)
T cd03538 66 PHKGTKIVSDGCGNTGKFFRCPYHAWSFKTDGSLLAIPLKKGYEGTGFDPSHADKGMQRVGAVDIYRGFVFARLSPSGP 144 (146)
T ss_pred cCCCCEeecccccccCCEEECCCCCCEECCCCCEEECCchhcCCcccCCcchhhCCCCcceeEEEECCEEEEEcCCCCC
Confidence 9999999754 343 568999999999999999999997541 24689999 689999999999987643
No 16
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).
Probab=99.96 E-value=1.1e-28 Score=209.10 Aligned_cols=108 Identities=25% Similarity=0.410 Sum_probs=99.8
Q ss_pred ceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEecCCCccccC
Q 015101 95 FWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 173 (413)
Q Consensus 95 ~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~~G~~~~~P 173 (413)
.|++||+++||+ +|++++++++|.+|+|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|
T Consensus 1 ~W~~v~~~~el~~~g~~~~~~~~g~~i~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~i~CP~Hgw~f~l~G~l~~~P 80 (118)
T cd03541 1 GWQVAGYSDQVKEKNQYFTGRLGNVEYVVCRDGNGKLHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGLDGSLTKAT 80 (118)
T ss_pred CCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEeCCCCCCcCCccCCccccCEEEeCCCCCEEcCCCeEEeCC
Confidence 499999999998 5889999999999999999999999999999999999999999889999999999999999999999
Q ss_pred Cccc------ccccccccceeeeCCeEEEcCCCCC
Q 015101 174 STQL------RNVKIKSLPCFEQEGMIWIWPGDEP 202 (413)
Q Consensus 174 ~~~~------~~~~l~~~~v~~~~G~I~v~~~~~~ 202 (413)
.... ...+|++++|.+++|||||+++++.
T Consensus 81 ~~~~~~~~~~~~~~L~~~~~~~~~g~vfv~~~~~~ 115 (118)
T cd03541 81 QATGIQNFNPKELGLVPLKVAEWGPFVLISVDRSL 115 (118)
T ss_pred CcccccCCCHHHCCCceEeEEEECCEEEEEeCCCc
Confidence 8642 3578999999999999999997643
No 17
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H). S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.
Probab=99.95 E-value=1.6e-28 Score=211.60 Aligned_cols=108 Identities=22% Similarity=0.413 Sum_probs=97.3
Q ss_pred eEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCc-ccCCeEecCCCCeEEecCCCccccC
Q 015101 96 WFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMP 173 (413)
Q Consensus 96 W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~-~~~~~l~CpyHgw~fd~~G~~~~~P 173 (413)
|++||+++||+ +|++.++.+++.+|+|+|+.||+++||.|+|||||++|+.|. ++++.|+||||||+||++|+|+.+|
T Consensus 1 W~~v~~~~~l~~~g~~~~~~~~~~~v~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~~l~CPyHgw~fdl~G~l~~~p 80 (129)
T cd03539 1 WCYVGLEAEIPNPGDFKRTLIGERSVIMTRDPDGGINVVENVCAHRGMRFCRERNGNAKDFVCPYHQWNYSLKGDLQGVP 80 (129)
T ss_pred CEEEEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEeccCcCCCCEeeeeccCccCEEECCCCCCEECCCCCEeecc
Confidence 99999999998 599999999999999999999999999999999999999875 4557899999999999999999999
Q ss_pred Ccc-----------------cccccccccceeeeCCeEEEcCCCCCC
Q 015101 174 STQ-----------------LRNVKIKSLPCFEQEGMIWIWPGDEPP 203 (413)
Q Consensus 174 ~~~-----------------~~~~~l~~~~v~~~~G~I~v~~~~~~~ 203 (413)
..+ ....+|++++|++++|+|||+++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~ 127 (129)
T cd03539 81 FRRGVKKDGKVNGGMPKDFKTKDHGLTKLKVATRGGVVFASFDHDVE 127 (129)
T ss_pred ccccccccccccccccCCcChHHCCCceeeEeEECCEEEEEeCCCCC
Confidence 742 124679999999999999999987654
No 18
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=99.95 E-value=3.8e-28 Score=211.31 Aligned_cols=111 Identities=32% Similarity=0.644 Sum_probs=98.8
Q ss_pred cccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCc--ccCCeEecCCCCeEEec-CC
Q 015101 91 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-DG 167 (413)
Q Consensus 91 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~--~~~~~l~CpyHgw~fd~-~G 167 (413)
.+++.|++|++++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|. +.++.|+||||||+||+ +|
T Consensus 10 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~l~r-~~g~v~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~Fdl~tG 88 (136)
T cd03548 10 GFRNHWYPALFSHELEEGEPKGIQLCGEPILLRR-VDGKVYALKDRCLHRGVPLSKKPECFTKGTITCWYHGWTYRLDDG 88 (136)
T ss_pred CcccCcEEEEEHHHCCCCCeEEEEECCcEEEEEe-cCCEEEEEeCcCcCCCCccccCcccccCCEEEecCCccEEeCCCc
Confidence 5678999999999999999999999999999999 69999999999999999999885 45689999999999996 89
Q ss_pred CccccCCccc----ccccccccceeeeCCeEEEcCCCCC
Q 015101 168 KCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEP 202 (413)
Q Consensus 168 ~~~~~P~~~~----~~~~l~~~~v~~~~G~I~v~~~~~~ 202 (413)
+|+.+|..+. ...+|++|||++++|+|||++++..
T Consensus 89 ~~~~~~~~p~~~~~~~~~L~~ypv~~~~g~V~v~~~~~~ 127 (136)
T cd03548 89 KLVTILANPDDPLIGRTGLKTYPVEEAKGMIFVFVGDGD 127 (136)
T ss_pred cEEEcccCCCccccccCCCceEeEEEECCEEEEEeCCcc
Confidence 9998775432 1467999999999999999997643
No 19
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=99.95 E-value=7.3e-28 Score=207.18 Aligned_cols=113 Identities=23% Similarity=0.409 Sum_probs=99.5
Q ss_pred cccCceEEeeecCCCCC-CCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcc-cCCeEecCCCCeEEecCCC
Q 015101 91 RLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGK 168 (413)
Q Consensus 91 ~~~~~W~~v~~~~el~~-g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~-~~~~l~CpyHgw~fd~~G~ 168 (413)
.+.+.|+.||+++||++ |++..+.+++.+|+|+|+.+|+++|+.|+|||||++|+.|.. +++.|+||||||+||.||+
T Consensus 4 i~~~~W~~v~~~~el~~~g~~~~~~~~~~~i~l~r~~~g~i~A~~n~C~Hrg~~L~~g~~g~~~~i~CP~Hgw~fd~~G~ 83 (128)
T cd03472 4 VFARSWLLLGHETHIPKAGDYLTTYMGEDPVIVVRQKDGSIRVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDTAGN 83 (128)
T ss_pred hhhCCCeEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEhhhCcCCCCeeeccCCCCcCEEECCcCCeEECCCcC
Confidence 35678999999999985 777888999999999999999999999999999999998864 4468999999999999999
Q ss_pred ccccCCccc--------ccccccccceeeeCCeEEEcCCCCCC
Q 015101 169 CEKMPSTQL--------RNVKIKSLPCFEQEGMIWIWPGDEPP 203 (413)
Q Consensus 169 ~~~~P~~~~--------~~~~l~~~~v~~~~G~I~v~~~~~~~ 203 (413)
|+++|..+. ...+|+.++|.+++|+|||+++++++
T Consensus 84 ~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~g~vfv~~~~~~~ 126 (128)
T cd03472 84 LVNVPFEKEAFCDGLDKADWGPLQARVETYKGLIFANWDAEAP 126 (128)
T ss_pred EEeccCcccccccCCCHHHCCCcceeEeEECCEEEEEcCCCCC
Confidence 999998532 13568999999999999999987654
No 20
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=99.94 E-value=2.1e-27 Score=201.36 Aligned_cols=107 Identities=33% Similarity=0.669 Sum_probs=99.2
Q ss_pred eEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcc-cCCeEecCCCCeEEecCCCccccC
Q 015101 96 WFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 173 (413)
Q Consensus 96 W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~-~~~~l~CpyHgw~fd~~G~~~~~P 173 (413)
|++||.++||+ +|+.+.+.+.|.+++|+|+.+|+++|+.|+|||+|++|+.|.+ .++.|+||||||+||.+|+|+.+|
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~~~a~~n~CpH~g~~L~~g~~~~~~~i~Cp~Hg~~Fd~~G~~~~~P 80 (118)
T cd03469 1 WYFVGHSSELPEPGDYVTLELGGEPLVLVRDRDGEVRAFHNVCPHRGARLCEGRGGNAGRLVCPYHGWTYDLDGKLVGVP 80 (118)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCccEEEEECCCCCEEEEEEeCCCCCCEeeeccCCCCCEEECCCCCCEECCCCcEEeCC
Confidence 99999999999 9999999999999999998899999999999999999999988 788999999999999999999999
Q ss_pred Cccc------ccccccccceeeeCCeEEEcCCCCC
Q 015101 174 STQL------RNVKIKSLPCFEQEGMIWIWPGDEP 202 (413)
Q Consensus 174 ~~~~------~~~~l~~~~v~~~~G~I~v~~~~~~ 202 (413)
+... ...+|++|||++++|+|||++++..
T Consensus 81 ~~~~~~~~~~~~~~L~~~~v~~~~g~v~v~~~~~~ 115 (118)
T cd03469 81 REEGFPGFDKEKLGLRTVPVEEWGGLIFVNLDPDA 115 (118)
T ss_pred cccccCCCCHHHCCCeEEEEEEECCEEEEEcCCCC
Confidence 8642 2467999999999999999998754
No 21
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=99.94 E-value=1.1e-26 Score=198.81 Aligned_cols=110 Identities=21% Similarity=0.486 Sum_probs=96.0
Q ss_pred CceEEeeecCCCCC-CCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccC-CeEecCCCCeEEecCCCccc
Q 015101 94 NFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEK 171 (413)
Q Consensus 94 ~~W~~v~~~~el~~-g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~-~~l~CpyHgw~fd~~G~~~~ 171 (413)
+.|+.||+++||++ |++..+.+++.+++|+|+.+|+++|+.|+|||||++|+.|...+ +.|+||||||+||.||+|+.
T Consensus 1 ~~w~~v~~~~el~~~g~~~~~~~~~~~iiv~r~~~g~~~A~~n~CpHrg~~L~~g~~~~~~~i~Cp~Hgw~Fd~tG~~~~ 80 (123)
T cd03535 1 RAWVFLGHESEIPNAGDYVVRYIGDDSFIVCRDEDGEIRAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYRNTGRLVG 80 (123)
T ss_pred CCCEEEEEHHHCCCCCCEEEEEECCeEEEEEECCCCCEEEEcccCccCCCEeeccccCCCCEEECCcCCCEECCCcCEee
Confidence 36999999999986 88888889999999999999999999999999999999987653 68999999999999999999
Q ss_pred cCCccc--------ccccccccce-eeeCCeEEEcCCCCCC
Q 015101 172 MPSTQL--------RNVKIKSLPC-FEQEGMIWIWPGDEPP 203 (413)
Q Consensus 172 ~P~~~~--------~~~~l~~~~v-~~~~G~I~v~~~~~~~ 203 (413)
+|.... ...+|+++++ ++++|+|||+++++++
T Consensus 81 ~p~~~~~~~~~~~~~~~~L~~~~~~e~~~g~vfv~l~~~~~ 121 (123)
T cd03535 81 VPAQQEAYGGGFDKSQWGLRPAPNLDSYNGLIFGSLDPKAP 121 (123)
T ss_pred CCCcccccccCcCHHHCCCccceeEEEECCEEEEEeCCCCC
Confidence 997432 2367999986 5589999999987543
No 22
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=99.94 E-value=1.3e-26 Score=198.23 Aligned_cols=108 Identities=19% Similarity=0.358 Sum_probs=96.0
Q ss_pred eEEeeecCCCCC-CCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCccc-CCeEecCCCCeEEecCCCccccC
Q 015101 96 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGKCEKMP 173 (413)
Q Consensus 96 W~~v~~~~el~~-g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~-~~~l~CpyHgw~fd~~G~~~~~P 173 (413)
|+.||+++||++ |++..+.++|.+++|+|+.+|+++|+.|+|||||++|+.+... ...|+||||||+||.+|+|+.+|
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~v~A~~n~CpH~g~~L~~~~~~~~~~i~Cp~Hgw~fd~~G~~~~~p 80 (123)
T cd03536 1 WVLLGHESEIPNKGDFMVRDMGSDSVIVARDKDGEIHVSLNVCPHRGMRISTTDGGNTQIHVCIYHGWAFRPNGDFIGAP 80 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEeeeCCCCCCCcccccCCCcCEEECCcCCCEECCCCcEEECC
Confidence 899999999986 8888889999999999988999999999999999999987653 35799999999999999999999
Q ss_pred Cccc---------ccccccccceeeeCCeEEEcCCCCCC
Q 015101 174 STQL---------RNVKIKSLPCFEQEGMIWIWPGDEPP 203 (413)
Q Consensus 174 ~~~~---------~~~~l~~~~v~~~~G~I~v~~~~~~~ 203 (413)
..+. ...+|++|+|++++|+|||+++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~ 119 (123)
T cd03536 81 VEKECMHGKMRTKAELGLHKARVTLYGGLIFATWNIDGP 119 (123)
T ss_pred ccccccccCCCCHHHCCCcceeEEEECCEEEEEeCCCCC
Confidence 7531 23679999999999999999987643
No 23
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=99.93 E-value=1.3e-25 Score=191.74 Aligned_cols=108 Identities=24% Similarity=0.468 Sum_probs=94.0
Q ss_pred eEEeeecCCCCC-CCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcc-cCCeEecCCCCeEEecCCCccccC
Q 015101 96 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 173 (413)
Q Consensus 96 W~~v~~~~el~~-g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~-~~~~l~CpyHgw~fd~~G~~~~~P 173 (413)
|+.||+.+||++ |+++.+.+.|.+++|+|+.+|+++|+.|+|||||++|+.|.. +++.|+||||||+||.||+|+.+|
T Consensus 1 w~~v~~~~elp~~g~~~~~~~~~~~i~l~r~~~g~v~A~~n~C~Hrg~~L~~g~~~~~~~i~CP~Hg~~Fd~~G~~~~~p 80 (123)
T cd03542 1 WVYLAHESQIPNNNDYFTTTIGRQPVVITRDKDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFSNTGKLLKVK 80 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEcccCcCCCCccccccccCCCEEECcCCCCEecCCccEEECC
Confidence 899999999985 889999999999999999999999999999999999998753 456999999999999999999999
Q ss_pred Cccc----------ccccccccc-eeeeCCeEEEcCCCCCC
Q 015101 174 STQL----------RNVKIKSLP-CFEQEGMIWIWPGDEPP 203 (413)
Q Consensus 174 ~~~~----------~~~~l~~~~-v~~~~G~I~v~~~~~~~ 203 (413)
.... ...+|+.++ +++++|||||+++++++
T Consensus 81 ~~~~~~y~~~~~~~~~~~L~~~~~~~~~~g~v~~~~~~~~~ 121 (123)
T cd03542 81 DPKTAGYPEGFNCDGSHDLTKVARFESYRGFLFGSLNADVA 121 (123)
T ss_pred cccccCcCcccChhhcCCCccceeEEEECCEEEEEcCCCCC
Confidence 6321 135788886 56678999999987654
No 24
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=99.92 E-value=2.8e-25 Score=182.28 Aligned_cols=96 Identities=27% Similarity=0.530 Sum_probs=90.6
Q ss_pred eEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEec-CCCccccCC
Q 015101 96 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 174 (413)
Q Consensus 96 W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~-~G~~~~~P~ 174 (413)
|++++.++||++|+.+.+.+.|.+++|+|+ +|+++||.|+|||+|++|+.|.+.++.|+||||||+||. +|+|+.+|.
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~~~v~r~-~~~~~a~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~fd~~~G~~~~~p~ 79 (98)
T cd03528 1 WVRVCAVDELPEGEPKRVDVGGRPIAVYRV-DGEFYATDDLCTHGDASLSEGYVEGGVIECPLHGGRFDLRTGKALSLPA 79 (98)
T ss_pred CeEEEEhhhcCCCCEEEEEECCeEEEEEEE-CCEEEEECCcCCCCCCCCCCCeEeCCEEEeCCcCCEEECCCCcccCCCC
Confidence 899999999999999999999999999997 669999999999999999999888889999999999997 999999987
Q ss_pred cccccccccccceeeeCCeEEE
Q 015101 175 TQLRNVKIKSLPCFEQEGMIWI 196 (413)
Q Consensus 175 ~~~~~~~l~~~~v~~~~G~I~v 196 (413)
. ..|++||+++++|.|||
T Consensus 80 ~----~~L~~~~v~~~~g~v~v 97 (98)
T cd03528 80 T----EPLKTYPVKVEDGDVYV 97 (98)
T ss_pred C----CCcceEeEEEECCEEEE
Confidence 3 47999999999999998
No 25
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=99.92 E-value=1.5e-24 Score=181.26 Aligned_cols=102 Identities=21% Similarity=0.352 Sum_probs=91.8
Q ss_pred eEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEec-CCCccccCC
Q 015101 96 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 174 (413)
Q Consensus 96 W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~-~G~~~~~P~ 174 (413)
|+.|+.++||++|+.+.+++.|.+++++|..+|+++|+.|+|||+|++|+.|..+++.|+||||||+||. +|.|.. |.
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~g~~~g~~i~CP~Hg~~Fdl~~G~~~~-~~ 79 (108)
T cd03474 1 FTKVCSLDDVWEGEMELVDVDGEEVLLVAPEGGEFRAFQGICPHQEIPLAEGGFDGGVLTCRAHLWQFDADTGEGLN-PR 79 (108)
T ss_pred CeEeeehhccCCCceEEEEECCeEEEEEEccCCeEEEEcCcCCCCCCCcccCcccCCEEEeCCcCCEEECCCccccC-CC
Confidence 8899999999999999999999999999989999999999999999999999888889999999999996 676654 32
Q ss_pred cccccccccccceeeeCCeEEEcCCCCC
Q 015101 175 TQLRNVKIKSLPCFEQEGMIWIWPGDEP 202 (413)
Q Consensus 175 ~~~~~~~l~~~~v~~~~G~I~v~~~~~~ 202 (413)
..+|++|||++++|.|||++...+
T Consensus 80 ----~~~L~~~~v~v~~g~v~v~~~~~~ 103 (108)
T cd03474 80 ----DCRLARYPVKVEGGDILVDTEGVL 103 (108)
T ss_pred ----CCccceEeEEEECCEEEEeCCCcC
Confidence 357999999999999999987544
No 26
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=99.92 E-value=1.4e-24 Score=178.26 Aligned_cols=97 Identities=21% Similarity=0.463 Sum_probs=89.1
Q ss_pred eEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEec-CCCccccCC
Q 015101 96 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 174 (413)
Q Consensus 96 W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~-~G~~~~~P~ 174 (413)
|+.++.++||++|+.+.+.+.|++++|+|+.+|+++|+.|.|||+|++|+.|.++++.|+||||||+||. +|.+.. |.
T Consensus 1 w~~v~~~~~l~~~~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~-p~ 79 (98)
T cd03530 1 WIDIGALEDIPPRGARKVQTGGGEIAVFRTADDEVFALENRCPHKGGPLSEGIVHGEYVTCPLHNWVIDLETGEAQG-PD 79 (98)
T ss_pred CEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCCEEEEcCcCCCCCCCccCCEEcCCEEECCCCCCEEECCCCCCCC-CC
Confidence 8999999999999999999999999999998899999999999999999999988899999999999996 888764 43
Q ss_pred cccccccccccceeeeCCeEEEc
Q 015101 175 TQLRNVKIKSLPCFEQEGMIWIW 197 (413)
Q Consensus 175 ~~~~~~~l~~~~v~~~~G~I~v~ 197 (413)
..+|++||+++++|.|||.
T Consensus 80 ----~~~l~~y~v~v~~g~v~v~ 98 (98)
T cd03530 80 ----EGCVRTFPVKVEDGRVYLG 98 (98)
T ss_pred ----CCccceEeEEEECCEEEEC
Confidence 2479999999999999984
No 27
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=99.91 E-value=4.7e-24 Score=176.21 Aligned_cols=100 Identities=21% Similarity=0.391 Sum_probs=92.9
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEe-cCCCccccC
Q 015101 95 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS-TDGKCEKMP 173 (413)
Q Consensus 95 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd-~~G~~~~~P 173 (413)
.|+.+|..+||++|..+.+.+.|.+++|+|..+|+++|++|+|||+|++|+.|.+.++.|.||+|||+|| .||+|+..|
T Consensus 1 ~w~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~G~~~~~~i~CP~Hg~~Fdl~tG~~~~~p 80 (101)
T TIGR02377 1 NWVKACDADDIGREDVARFDHGGRTFAIYRTPDDQYYATDGLCTHEYAHLADGLVMDTTVECPKHAGCFDYRTGEALNPP 80 (101)
T ss_pred CcEEEEEHHHcCCCCEEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCCCCCCCEEcCCEEECCccCCEEECCCCcccCCC
Confidence 3999999999999999999999999999998799999999999999999999999889999999999999 599999988
Q ss_pred CcccccccccccceeeeCCeEEEcC
Q 015101 174 STQLRNVKIKSLPCFEQEGMIWIWP 198 (413)
Q Consensus 174 ~~~~~~~~l~~~~v~~~~G~I~v~~ 198 (413)
.. ..|++||+++.+|.|||.+
T Consensus 81 ~~----~~l~~y~v~v~~g~v~V~~ 101 (101)
T TIGR02377 81 VC----VNLKTYPVKVVDGAVYVDI 101 (101)
T ss_pred cc----CCcceEeEEEECCEEEEeC
Confidence 63 3699999999999999853
No 28
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=99.90 E-value=7.7e-24 Score=175.53 Aligned_cols=96 Identities=24% Similarity=0.324 Sum_probs=87.5
Q ss_pred eEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCC-CCCCccc----CCeEecCCCCeEEe-cCCCc
Q 015101 96 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACP-LHLGSVN----EGRIQCPYHGWEYS-TDGKC 169 (413)
Q Consensus 96 W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~-L~~g~~~----~~~l~CpyHgw~fd-~~G~~ 169 (413)
|++||.++||++|+.+.+.+.|++++|+|..+|+++|+.|+|||+|++ |+.|... +..|+||||||+|| .+|+|
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~ 80 (103)
T cd03529 1 WQTVCALDDLPPGSGVAALVGDTQIAIFRLPGREVYAVQNMDPHSRANVLSRGIVGDIGGEPVVASPLYKQHFSLKTGRC 80 (103)
T ss_pred CEEEeEHHHCCCCCcEEEEECCEEEEEEEeCCCeEEEEeCcCCCCCCcccCCceEcccCCCeEEECCCCCCEEEcCCCCc
Confidence 899999999999999999999999999998777999999999999997 7777653 34899999999999 69999
Q ss_pred cccCCcccccccccccceeeeCCeEEE
Q 015101 170 EKMPSTQLRNVKIKSLPCFEQEGMIWI 196 (413)
Q Consensus 170 ~~~P~~~~~~~~l~~~~v~~~~G~I~v 196 (413)
+..|. .+|++|||++++|.|||
T Consensus 81 ~~~p~-----~~l~~y~v~~~~g~v~v 102 (103)
T cd03529 81 LEDED-----VSVATFPVRVEDGEVYV 102 (103)
T ss_pred cCCCC-----ccEeeEeEEEECCEEEE
Confidence 99875 47999999999999998
No 29
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=99.90 E-value=1.3e-23 Score=174.82 Aligned_cols=99 Identities=23% Similarity=0.412 Sum_probs=89.7
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCC-CCCCCCCcccCCe----EecCCCCeEEec-CCC
Q 015101 95 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHR-ACPLHLGSVNEGR----IQCPYHGWEYST-DGK 168 (413)
Q Consensus 95 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHr-g~~L~~g~~~~~~----l~CpyHgw~fd~-~G~ 168 (413)
.|++|+.++||++|..+.+.+.|.+++|+|..+|+++|+.|+|||+ +.+|+.|.+.++. |+||||||+||. +|+
T Consensus 1 ~w~~v~~~~el~~g~~~~~~v~g~~l~v~r~~~~~~~a~~~~CpH~g~~~L~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~ 80 (105)
T TIGR02378 1 TWQDICAIDDIPEETGVCVLLGDTQIAIFRVPGDQVFAIQNMCPHKRAFVLSRGIVGDAQGELWVACPLHKRNFRLEDGR 80 (105)
T ss_pred CcEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCcEEEEeCcCCCCCCccccceEEccCCCcEEEECCcCCCEEEcCCcc
Confidence 4999999999999999999999999999998789999999999999 8999988765554 999999999995 899
Q ss_pred ccccCCcccccccccccceeeeCCeEEEcC
Q 015101 169 CEKMPSTQLRNVKIKSLPCFEQEGMIWIWP 198 (413)
Q Consensus 169 ~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~ 198 (413)
|+..|. ..|++||+++++|.|||.+
T Consensus 81 ~~~~~~-----~~L~~y~v~v~~g~v~v~~ 105 (105)
T TIGR02378 81 CLEDDS-----GSVRTYEVRVEDGRVYVAL 105 (105)
T ss_pred ccCCCC-----ccEeeEeEEEECCEEEEeC
Confidence 998764 4799999999999999954
No 30
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=99.90 E-value=1.3e-23 Score=171.53 Aligned_cols=93 Identities=26% Similarity=0.489 Sum_probs=86.9
Q ss_pred EeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEec-CCCccccCCcc
Q 015101 98 PVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPSTQ 176 (413)
Q Consensus 98 ~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~-~G~~~~~P~~~ 176 (413)
.||.++||++|+.+.+.++|.+++|+|. +|+++|++|+|||+|++|+.|.+.++.|+||||||+||. +|+|+..|..
T Consensus 2 ~v~~~~~l~~g~~~~~~~~~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~- 79 (95)
T cd03478 2 VVCRLSDLGDGEMKEVDVGDGKVLLVRQ-GGEVHAIGAKCPHYGAPLAKGVLTDGRIRCPWHGACFNLRTGDIEDAPAL- 79 (95)
T ss_pred ceeehhhCCCCCEEEEEeCCcEEEEEEE-CCEEEEEcCcCcCCCCccCCCeEeCCEEEcCCCCCEEECCCCcCcCCCcc-
Confidence 3789999999999999999999999997 999999999999999999999988899999999999996 9999999874
Q ss_pred cccccccccceeeeCCeEE
Q 015101 177 LRNVKIKSLPCFEQEGMIW 195 (413)
Q Consensus 177 ~~~~~l~~~~v~~~~G~I~ 195 (413)
..|++||+++++|.||
T Consensus 80 ---~~l~~~~v~~~~g~i~ 95 (95)
T cd03478 80 ---DSLPCYEVEVEDGRVY 95 (95)
T ss_pred ---CCcceEEEEEECCEEC
Confidence 3699999999999997
No 31
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=99.90 E-value=2.3e-23 Score=173.61 Aligned_cols=99 Identities=19% Similarity=0.361 Sum_probs=90.2
Q ss_pred eEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccC-CeEecCCCCeEEec-CCCccccC
Q 015101 96 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYST-DGKCEKMP 173 (413)
Q Consensus 96 W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~-~~l~CpyHgw~fd~-~G~~~~~P 173 (413)
|+.+|..+||++|..+.+.+. .+++|+|. +|+++|++|+|||+|++|+.|.+++ +.|+||+|||+||. +|+|+..|
T Consensus 3 ~~~v~~~~~l~~g~~~~~~~~-~~i~v~~~-~g~~~A~~~~CpH~g~~L~~G~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~p 80 (106)
T PRK09965 3 RIYACPVADLPEGEALRVDTS-PVIALFNV-GGEFYAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALCLP 80 (106)
T ss_pred cEEeeeHHHcCCCCeEEEeCC-CeEEEEEE-CCEEEEEeCcCCCCCCCCCceEECCCCEEEcCCCCCEEEcCCCCeeCCC
Confidence 899999999999998888877 88999995 9999999999999999999998877 79999999999995 99999887
Q ss_pred CcccccccccccceeeeCCeEEEcCCC
Q 015101 174 STQLRNVKIKSLPCFEQEGMIWIWPGD 200 (413)
Q Consensus 174 ~~~~~~~~l~~~~v~~~~G~I~v~~~~ 200 (413)
. ..+|++|++++.+|.|||.+..
T Consensus 81 ~----~~~l~~y~v~v~~g~v~v~~~~ 103 (106)
T PRK09965 81 A----TDPLRTYPVHVEGGDIFIDLPE 103 (106)
T ss_pred C----CCCcceEeEEEECCEEEEEccC
Confidence 6 3579999999999999998754
No 32
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=99.86 E-value=7.2e-22 Score=161.58 Aligned_cols=93 Identities=31% Similarity=0.646 Sum_probs=79.1
Q ss_pred ceEEeeecCCCCC-CCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCc--ccCCeEecCCCCeEEecC-CCcc
Q 015101 95 FWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYSTD-GKCE 170 (413)
Q Consensus 95 ~W~~v~~~~el~~-g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~--~~~~~l~CpyHgw~fd~~-G~~~ 170 (413)
.|++|+.++||++ |+.+.+.+.+.. ++++..+|+++|+.|+|||+|++|+.|. .+++.|+||||||+||.+ |+|+
T Consensus 1 ~W~~v~~~~el~~~~~~~~~~~~~~~-v~~~~~~g~~~A~~~~CpH~g~~l~~~~~~~~~~~i~Cp~Hg~~Fd~~tG~~~ 79 (97)
T PF00355_consen 1 QWVPVCRSSELPEPGDVKRVDVGGKL-VLVRRSDGEIYAFSNRCPHQGCPLSEGPFSEDGGVIVCPCHGWRFDLDTGECV 79 (97)
T ss_dssp SEEEEEEGGGSHSTTEEEEEEETTEE-EEEEETTTEEEEEESB-TTTSBBGGCSSEETTTTEEEETTTTEEEETTTSBEE
T ss_pred CEEEeeEHHHCCCCCCEEEEEcCCcE-EEEEeCCCCEEEEEccCCccceeEcceecccccCEEEeCCcCCEEeCCCceEe
Confidence 4999999999998 888899995545 5555689999999999999999999994 456799999999999975 9999
Q ss_pred ccCCcccccccccccceeeeCC
Q 015101 171 KMPSTQLRNVKIKSLPCFEQEG 192 (413)
Q Consensus 171 ~~P~~~~~~~~l~~~~v~~~~G 192 (413)
.+|+.. .++.||++++++
T Consensus 80 ~~p~~~----~l~~~~v~ve~~ 97 (97)
T PF00355_consen 80 GGPAPR----PLPLYPVKVEGD 97 (97)
T ss_dssp ESTTCS----BSTEEEEEEETT
T ss_pred cCCCCC----CcCCCCeEEeCC
Confidence 999853 789999988763
No 33
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=99.86 E-value=1.6e-21 Score=161.62 Aligned_cols=98 Identities=28% Similarity=0.612 Sum_probs=91.0
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCC-CCCCCCCCcccCC----eEecCCCCeEEec-CCC
Q 015101 95 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAH-RACPLHLGSVNEG----RIQCPYHGWEYST-DGK 168 (413)
Q Consensus 95 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpH-rg~~L~~g~~~~~----~l~CpyHgw~fd~-~G~ 168 (413)
.|+.||..+||++|..+.+.+.|.+|+|||..+|++||++|+||| ++++|+.|.+.+. .|.||.|+|+||+ +|+
T Consensus 1 ~W~~v~~~~~L~~~~~~~~~v~g~~Ialf~~~~~~vyAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~~~f~L~tG~ 80 (104)
T PF13806_consen 1 SWVPVCPLDDLPPGEGRAVEVDGRQIALFRVRDGEVYAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHKWRFDLRTGE 80 (104)
T ss_dssp SEEEEEETTTSCTTSEEEEEETTEEEEEEEESTTEEEEEESBETTTTSSCGCGSEEEECTTEEEEEETTTTEEEETTTTE
T ss_pred CeeEeccHHHCCCCCcEEEEECCeEEEEEEeCCCCEEEEeccCCccCCcccceeEEccCCCCEEEECCCCCCeEECCCcC
Confidence 499999999999999999999999999999889999999999999 8999999988765 8999999999995 999
Q ss_pred ccccCCcccccccccccceeeeCCeEEEc
Q 015101 169 CEKMPSTQLRNVKIKSLPCFEQEGMIWIW 197 (413)
Q Consensus 169 ~~~~P~~~~~~~~l~~~~v~~~~G~I~v~ 197 (413)
|+..|. .++++|||++.+|.|||.
T Consensus 81 ~~~~~~-----~~l~~ypvrv~~g~V~V~ 104 (104)
T PF13806_consen 81 CLEDPD-----VSLRTYPVRVEDGQVYVE 104 (104)
T ss_dssp ESSECS-----EBSBEEEEEECTTEEEEE
T ss_pred cCCCCC-----CcEEeEEEEEECCEEEEC
Confidence 998664 579999999999999984
No 34
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=99.85 E-value=3.2e-21 Score=158.16 Aligned_cols=95 Identities=25% Similarity=0.468 Sum_probs=87.7
Q ss_pred eEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEec-CCCccccCC
Q 015101 96 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 174 (413)
Q Consensus 96 W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~-~G~~~~~P~ 174 (413)
|++++..++|++|+.+.+.+.+.+++|+|..+|+++|++|+|||+|++|..+..+++.|+||+|||+||. ||+|+..|.
T Consensus 1 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~a~~~~CpH~g~~l~~~~~~~~~i~Cp~H~~~f~~~~G~~~~~p~ 80 (98)
T cd03467 1 WVVVGALSELPPGGGRVVVVGGGPVVVVRREGGEVYALSNRCTHQGCPLSEGEGEDGCIVCPCHGSRFDLRTGEVVSGPA 80 (98)
T ss_pred CEEeeeccccCCCceEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCccCCcCccCCCEEEeCCCCCEEeCCCccCcCCCC
Confidence 8899999999999999999999999999988899999999999999999999878899999999999997 999999987
Q ss_pred cccccccccccceeeeC-CeE
Q 015101 175 TQLRNVKIKSLPCFEQE-GMI 194 (413)
Q Consensus 175 ~~~~~~~l~~~~v~~~~-G~I 194 (413)
...|++|++++.+ +.|
T Consensus 81 ----~~~l~~~~v~~~~~~~~ 97 (98)
T cd03467 81 ----PRPLPKYPVKVEGDGVV 97 (98)
T ss_pred ----CCCcCEEEEEEeCCceE
Confidence 4679999999884 444
No 35
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=99.85 E-value=5.3e-21 Score=159.75 Aligned_cols=98 Identities=19% Similarity=0.238 Sum_probs=87.5
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEc-CCCcEEEEecCCCCCCCC-CCCCcccC---C-eEecCCCCeEEe-cCC
Q 015101 95 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACP-LHLGSVNE---G-RIQCPYHGWEYS-TDG 167 (413)
Q Consensus 95 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~-~~G~i~a~~n~CpHrg~~-L~~g~~~~---~-~l~CpyHgw~fd-~~G 167 (413)
.|..||..+||++|..+.+.+.|++|+|+|. .+|+++|++|+|||.|++ |+.|.+.+ + .++||+|||+|| .+|
T Consensus 3 ~~~~v~~~~dl~~g~~~~v~v~g~~i~l~~~~~~g~~~A~~n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~~~Fdl~TG 82 (108)
T PRK09511 3 QWKDICKIDDILPGTGVCALVGDEQVAIFRPYHDEQVFAISNIDPFFQASVLSRGLIAEHQGELWVASPLKKQRFRLSDG 82 (108)
T ss_pred cceEeeEHhHcCCCceEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCceEccCCCeEEEECCCCCCEEECCCc
Confidence 3999999999999999999999999999995 589999999999999985 99997632 2 599999999999 599
Q ss_pred CccccCCcccccccccccceeeeCCeEEEc
Q 015101 168 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIW 197 (413)
Q Consensus 168 ~~~~~P~~~~~~~~l~~~~v~~~~G~I~v~ 197 (413)
+|+..|. ..|++|||++.+|.|||.
T Consensus 83 ~~~~~~~-----~~l~typV~ve~g~V~v~ 107 (108)
T PRK09511 83 LCMEDEQ-----FSVKHYDARVKDGVVQLR 107 (108)
T ss_pred ccCCCCC-----ccEeeEeEEEECCEEEEe
Confidence 9997664 379999999999999984
No 36
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=99.84 E-value=4.8e-21 Score=155.03 Aligned_cols=87 Identities=24% Similarity=0.387 Sum_probs=78.8
Q ss_pred eeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEecCCCccccCCcccc
Q 015101 99 VAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 178 (413)
Q Consensus 99 v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~~G~~~~~P~~~~~ 178 (413)
+|..+||++|+.+.+.+.|++++|+|+.+|+++|+.|+|||+|++|+.|.. ++.|.||||||+||.||+|+..|+.
T Consensus 2 ~~~~~dl~~g~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~l~~g~~-~~~i~CP~Hg~~Fd~~G~~~~~Pa~--- 77 (91)
T cd03477 2 ITDIEDLAPGEGGVVNIGGKRLAVYRDEDGVLHTVSATCTHLGCIVHWNDA-EKSWDCPCHGSRFSYDGEVIEGPAV--- 77 (91)
T ss_pred ccchhhcCCCCeEEEEECCEEEEEEECCCCCEEEEcCcCCCCCCCCcccCC-CCEEECCCCCCEECCCCcEeeCCCC---
Confidence 477899999999999999999999999999999999999999999998865 4799999999999999999999973
Q ss_pred cccccccceeee
Q 015101 179 NVKIKSLPCFEQ 190 (413)
Q Consensus 179 ~~~l~~~~v~~~ 190 (413)
..|++|++...
T Consensus 78 -~~l~~y~v~~~ 88 (91)
T cd03477 78 -SGLKPADDAPI 88 (91)
T ss_pred -CCCCeeEeecc
Confidence 47888988654
No 37
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.84 E-value=8.3e-21 Score=157.82 Aligned_cols=101 Identities=23% Similarity=0.436 Sum_probs=89.6
Q ss_pred CceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCC-eEecCCCCeEEe-cCCCccc
Q 015101 94 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG-RIQCPYHGWEYS-TDGKCEK 171 (413)
Q Consensus 94 ~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~-~l~CpyHgw~fd-~~G~~~~ 171 (413)
..|+.+|..+||+++..+.+.+.+..+++++..+|+++|+.|+|||.|++|+.|.+.++ .++||+|+|.|| .||+|+.
T Consensus 3 ~~w~~~c~~~dl~~~~~~~v~~~~~~~~~~~~~~g~v~A~~n~CpH~~~~l~~g~v~~~~~i~Cp~H~a~Fdl~tG~~~~ 82 (106)
T COG2146 3 MNWIRICKVDDLPEGGGVRVLVGGGRFALVVRADGEVFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECLE 82 (106)
T ss_pred CceEEEEehHhcCCCCceEEEecCCEEEEEEecCCEEEEEeCcCCCCCCcccccEeCCCCEEECCccCCEEEcCCCceec
Confidence 46999999999999888898884426667777899999999999999999999999876 699999999999 5999999
Q ss_pred cCCcccccccccccceeeeCCeEEEcC
Q 015101 172 MPSTQLRNVKIKSLPCFEQEGMIWIWP 198 (413)
Q Consensus 172 ~P~~~~~~~~l~~~~v~~~~G~I~v~~ 198 (413)
.|+.. .|++||+++.+|.|||.+
T Consensus 83 ~p~~~----~l~~y~vrve~g~v~v~~ 105 (106)
T COG2146 83 PPAGK----TLKTYPVRVEGGRVFVDL 105 (106)
T ss_pred CCCCC----ceeEEeEEEECCEEEEec
Confidence 99853 299999999999999975
No 38
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.
Probab=99.79 E-value=4.2e-19 Score=151.99 Aligned_cols=95 Identities=20% Similarity=0.319 Sum_probs=85.3
Q ss_pred EeeecCCCCCCCeEEEEECC--eeEEEEEcC---------CCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEec-
Q 015101 98 PVAFSTDLKDDTMVPFDCFE--EPWVIFRGK---------DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST- 165 (413)
Q Consensus 98 ~v~~~~el~~g~~~~~~~~g--~~vvv~R~~---------~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~- 165 (413)
.+|..++|++|+.+.+.+.+ .+++|+|.. +|+++|++|+|||+|++|+.+. +++.|.||+|||+||.
T Consensus 5 ~v~~~~~l~~g~~~~~~~~~~~~~i~v~r~~~~~~~~~~~~g~~~A~~~~CpH~g~~L~~g~-~~~~v~CP~Hg~~Fdl~ 83 (126)
T cd03476 5 KVANLSQLSPGQPVTFNYPDESSPCVLVKLGVPVPGGVGPDNDIVAFSALCTHMGCPLTYDP-SNKTFVCPCHFSQFDPA 83 (126)
T ss_pred EEeeHHHCCCCCeEEEEcCCCCCcEEEEECCccccCccccCCEEEEEeCcCCCCCccccccc-cCCEEEccCcCCEEeCC
Confidence 68899999999999999887 899999974 7999999999999999999977 6689999999999996
Q ss_pred -CCCccccCCcccccccccccceeee--CCeEEEc
Q 015101 166 -DGKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIW 197 (413)
Q Consensus 166 -~G~~~~~P~~~~~~~~l~~~~v~~~--~G~I~v~ 197 (413)
+|+|+..|. ...|+.||+++. +|.|||.
T Consensus 84 tgG~~~~gPa----~~~L~~ypv~ve~~~g~V~~~ 114 (126)
T cd03476 84 RGGQMVSGQA----TQNLPQIVLEYDEASGDIYAV 114 (126)
T ss_pred CCCeEEcCCC----CCCCCeEEEEEECCCCEEEEE
Confidence 579998886 358999999999 9999983
No 39
>cd08878 RHO_alpha_C_DMO-like C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Stenotrophomonas maltophilia dicamba O-demethylase (DMO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.76 E-value=5.9e-18 Score=153.97 Aligned_cols=171 Identities=21% Similarity=0.214 Sum_probs=110.6
Q ss_pred EEEeecChhhhhhccCCCcccCccCccccccCCCC---CceeeeecCCCCC-----------C--ccccC--CCccceec
Q 015101 223 VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV---PSLVKFLTPASGL-----------Q--GYWDP--YPIDMEFR 284 (413)
Q Consensus 223 ~~~~~~nwk~~~EN~~D~~H~~~~H~~t~~~~~~~---~~~~~~~~~~~~~-----------~--~~~~~--~~~~~~f~ 284 (413)
.++++|||++++||++|++|++|||.++++..... +...++.....+. . ++-+. ......|.
T Consensus 5 ~~~~~~n~~~~~EN~~D~~H~~fvH~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (196)
T cd08878 5 YRHIDCNWLQVVENLMDPSHVSFVHRSSIGRDAADLPSGPPKEVEEVPRGVTYRRWREDEDPPPFGFEGPVDRWRVIEFL 84 (196)
T ss_pred cEEecCCcEEEehhCccccchhhhChhhhCccccccccCCCceEEEeCCEEEEEEEecCCCCCCCCCCCCccEEEEEEEE
Confidence 45789999999999999999999999998864321 1111111000000 0 00000 01124678
Q ss_pred CCeEEEEEeeeeCCCCcCCCCcccccceeEEEEEeecCCCCcEEEEeeeecchhhhc--cCchhHHHHHHHHHhHHHhhH
Q 015101 285 PPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVL--KHVPFMQYLWRHFAEQVLNED 362 (413)
Q Consensus 285 ~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~V~~ED 362 (413)
+|+++........+|. ......+..++.++|+++++|++++.+++++.... ...+.+...+..+...|+.||
T Consensus 85 ~P~~~~~~~~~~~~~~------~~~~~~~~~~~~~tPid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~eD 158 (196)
T cd08878 85 LPNVLLIDPGVAPAGT------REQGVRMRVTHWITPIDETTTHYFWFFVRNFAPDEEKKDDEELTETLRSGLSGAFNED 158 (196)
T ss_pred CCEEEEEecccccCCc------CCCcceEEEEEEEccCCCCeEEEEEEeccCCCCCccccCCHHHHHHHHHHhhhhchhH
Confidence 8987765544332221 11112456678899999999999998887764321 011233344445678899999
Q ss_pred HHHHHHHhhhccCCCCccccccCCCHHHHHHHHHHHHH
Q 015101 363 LRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL 400 (413)
Q Consensus 363 ~~ile~qq~~l~~~~~~~~~~~~~D~~~v~yRrwl~~l 400 (413)
+.|+|+||+++... ...+.+..+|+++++||||++++
T Consensus 159 ~~i~e~q~~~~~~~-~~~~~l~~~D~~~~~~Rr~l~~~ 195 (196)
T cd08878 159 KEAVEAQQRIIDRD-PTREHLGLSDKGIVRFRRLLRRL 195 (196)
T ss_pred HHHHHHHHHHHhcC-CcccccccccHHHHHHHHHHHHh
Confidence 99999999998764 23356677999999999999875
No 40
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.76 E-value=3.2e-18 Score=145.59 Aligned_cols=91 Identities=18% Similarity=0.351 Sum_probs=74.1
Q ss_pred CCCCeEEEE-ECCeeEEEEEcCCCcE--EEEecCCCCCCCCCCCCcccCCeEecCCCCeEEecCCCccccCCcccccccc
Q 015101 106 KDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKI 182 (413)
Q Consensus 106 ~~g~~~~~~-~~g~~vvv~R~~~G~i--~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~~G~~~~~P~~~~~~~~l 182 (413)
.+|++..+. ..+.+.++.+..+|++ +|++|+|||+|++|..+.. ++.|+||+|||+||.+|+++..|. ...|
T Consensus 21 ~~~~~~~~~~~~~~~~Ilv~~~dg~i~~~A~~~~CpH~G~~l~~~~~-~~~i~CP~Hg~~Fd~tG~~~~gPa----~~~L 95 (126)
T cd03471 21 NPGDRSLVQGLKGDPTYLIVEEDKTIANYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDATGKVVRGPA----PLSL 95 (126)
T ss_pred CCCCeEEEEEecCCeEEEEEeCCCeEEEEEecCCCcCCCCCcCccCC-CCEEEcCCCCCEECCCCCEecCCC----CCCC
Confidence 367777766 4444444445579977 8999999999999998765 479999999999999999998886 4579
Q ss_pred cccceeeeCCeEEEcCCCC
Q 015101 183 KSLPCFEQEGMIWIWPGDE 201 (413)
Q Consensus 183 ~~~~v~~~~G~I~v~~~~~ 201 (413)
+.|++++.+|.|||.+..+
T Consensus 96 ~~y~V~vedg~I~V~~~~~ 114 (126)
T cd03471 96 ALVHATVDDDKVVLSPWTE 114 (126)
T ss_pred ceEeEEEECCEEEEEECcc
Confidence 9999999999999975443
No 41
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit. This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
Probab=99.71 E-value=4.7e-17 Score=139.67 Aligned_cols=94 Identities=20% Similarity=0.348 Sum_probs=81.7
Q ss_pred EeeecCCCCCCCeEEEEECC--eeEEEEEc---------CCCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEecC
Q 015101 98 PVAFSTDLKDDTMVPFDCFE--EPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD 166 (413)
Q Consensus 98 ~v~~~~el~~g~~~~~~~~g--~~vvv~R~---------~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~~ 166 (413)
.+|..+||++|+.+.+.+.+ .+++++|. .+|+++|++|+|||.|++|+++. ++..|.||+|||+||.+
T Consensus 8 ~v~~~~dl~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~~~A~~~~CpH~g~~L~~~~-~~~~i~CP~Hga~Fdl~ 86 (129)
T TIGR02694 8 RVANISELKLNEPLDFNYPDASSPGVLLKLGTPVEGGVGPDGDIVAFSTLCTHMGCPVSYSA-DNKTFNCPCHFSVFDPE 86 (129)
T ss_pred EEEeHHHCCCCCCEEEecCCCCCCEEEEecCCcccCccccCCEEEEEeCcCCCCCccccccc-CCCEEEcCCCCCEECCC
Confidence 68999999999999999865 47888883 58999999999999999999876 56899999999999964
Q ss_pred --CCccccCCcccccccccccceeee-CCeEEE
Q 015101 167 --GKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWI 196 (413)
Q Consensus 167 --G~~~~~P~~~~~~~~l~~~~v~~~-~G~I~v 196 (413)
|+|+..|. ...|++||+++. +|.||.
T Consensus 87 tgG~~~~gP~----~~~L~~y~v~v~~~G~V~~ 115 (129)
T TIGR02694 87 KGGQQVWGQA----TQNLPQIVLRVADNGDIFA 115 (129)
T ss_pred CCCcEECCCC----CCCCCeeEEEEECCCeEEE
Confidence 69998776 357999999997 599994
No 42
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.69 E-value=1.2e-16 Score=136.89 Aligned_cols=92 Identities=21% Similarity=0.321 Sum_probs=81.3
Q ss_pred ecCCCCCCCeEEEEECCeeEEEEEcC----------------------------CCcEEEEecCCCCCCCCCCCCcccCC
Q 015101 101 FSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------DGIPGCVQNTCAHRACPLHLGSVNEG 152 (413)
Q Consensus 101 ~~~el~~g~~~~~~~~g~~vvv~R~~----------------------------~G~i~a~~n~CpHrg~~L~~g~~~~~ 152 (413)
..++|++|+.+.+.+.|++|+|+|.. +|+++|+.+.|||.||.+.++.+.++
T Consensus 5 dl~~l~~G~~~~v~w~Gkpv~I~~rt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~CtH~gc~~~~~~~~~~ 84 (126)
T cd03470 5 DLSKIEEGQLITVEWRGKPVFIRRRTPEEIAEAKAVDLSLLDDPDPAANRVRSGKPEWLVVIGICTHLGCVPTYRAGDYG 84 (126)
T ss_pred EhhhCCCCCEEEEEECCeEEEEEECCHHHHhhhhhcchhhcCCccccccccccCCCcEEEEeCcCCCCCCeeccccCCCC
Confidence 46889999999999999999999952 67999999999999999988766678
Q ss_pred eEecCCCCeEEecCCCccccCCcccccccccccceeeeC-CeEEE
Q 015101 153 RIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQE-GMIWI 196 (413)
Q Consensus 153 ~l~CpyHgw~fd~~G~~~~~P~~~~~~~~l~~~~v~~~~-G~I~v 196 (413)
.|.||||||+||.+|+.+..|+ +..|+.||++..+ +.|+|
T Consensus 85 ~~~CPcHgs~Fdl~G~~~~gPa----~~~L~~~p~~~~~~~~l~i 125 (126)
T cd03470 85 GFFCPCHGSHYDASGRIRKGPA----PLNLEVPPYKFLSDTTIVI 125 (126)
T ss_pred EEEecCcCCEECCCCeEecCCC----CCCCCeeeEEEecCCEEEe
Confidence 9999999999999999998887 4589999998766 67765
No 43
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=99.68 E-value=7.9e-17 Score=132.21 Aligned_cols=72 Identities=15% Similarity=0.342 Sum_probs=65.8
Q ss_pred cCCCCCCCeEEEEE-CCeeEEEEEcCCCcEEEEecCCCCCCCCCCCC--cccCCeEecCCCCeEEe-cCCCccccCC
Q 015101 102 STDLKDDTMVPFDC-FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SVNEGRIQCPYHGWEYS-TDGKCEKMPS 174 (413)
Q Consensus 102 ~~el~~g~~~~~~~-~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g--~~~~~~l~CpyHgw~fd-~~G~~~~~P~ 174 (413)
..+|++|..+.+.+ .|..|+|+|. +|+++|+.|+|||+|++|+.| .++++.|+||+|||+|| .+|+++..|.
T Consensus 14 l~eL~~G~~~~v~v~~g~~I~V~~~-~G~~~A~~n~CpH~g~pL~~g~g~~~g~~V~CP~Hg~~FDLrTG~~~~~p~ 89 (107)
T cd03473 14 VANLKEGINFFRNKEDGKKYIIYKS-KSELKACKNQCKHQGGLFIKDIEDLDGRTVRCTKHNWKLDVSTMKYVNPPD 89 (107)
T ss_pred HhcCCCCceEEEEecCCcEEEEEEE-CCEEEEEcCCCCCCCccccCCcceEeCCEEEeCCCCCEEEcCCCCCccCCc
Confidence 47899999999999 9999999995 999999999999999999994 57788999999999999 5999998765
No 44
>cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC), and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-te
Probab=99.67 E-value=8.2e-16 Score=138.86 Aligned_cols=161 Identities=19% Similarity=0.181 Sum_probs=99.6
Q ss_pred EEEEeecChhhhhhccCCCcccCccCccccccCC-----CCCceeeeecC----CCCCCccccC-------------CCc
Q 015101 222 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGW-----SVPSLVKFLTP----ASGLQGYWDP-------------YPI 279 (413)
Q Consensus 222 ~~~~~~~nwk~~~EN~~D~~H~~~~H~~t~~~~~-----~~~~~~~~~~~----~~~~~~~~~~-------------~~~ 279 (413)
..++++||||+++||++|+||++++|+++++... ..... ....+ .......|.. ...
T Consensus 3 ~~~~~~~NWK~~~En~~E~YH~~~~H~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (188)
T cd00680 3 YEYEVDCNWKLAVENFLECYHVPTVHPDTLATGLPLPLLFGDHY-RVDDTGEGPGEGLSRHWGDGKGPQSALPGLKPGGY 81 (188)
T ss_pred eEEEeccCceEehhhccccccccccChhhhccccccCcccCCce-EEEeccCCCCChhhcccchhhhcccccccccccCe
Confidence 4578999999999999999999999999987421 11111 11110 0000000100 011
Q ss_pred cceecCCeEEEEEeeeeCCCCcCCCCcccccceeEEEEEeecCCCCcEEEEeeeecchhhh-ccCchhHHHHHHHHHhHH
Q 015101 280 DMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASV-LKHVPFMQYLWRHFAEQV 358 (413)
Q Consensus 280 ~~~f~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~V 358 (413)
...+.+||+++... .....++.++|+++++|++.+.++...... ..........+..+...|
T Consensus 82 ~~~~~fPn~~~~~~-----------------~~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 144 (188)
T cd00680 82 LYLYLFPNLMIGLY-----------------PDSLQVQQFVPIGPNKTRLEVRLYRPKDEDAREEFDAELESLAGILRQV 144 (188)
T ss_pred EEEEECCcEeeeec-----------------CCEEEEEEEEecCCCcEEEEEEEEEecccccchhhHHHHHHhHHHHHHH
Confidence 24456788775432 123456778999999999999887654321 111111111122346889
Q ss_pred HhhHHHHHHHHhhhccCCCCccccccCCCHHHHHHHHHHHHH
Q 015101 359 LNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL 400 (413)
Q Consensus 359 ~~ED~~ile~qq~~l~~~~~~~~~~~~~D~~~v~yRrwl~~l 400 (413)
+.||+.++|+||+++.++.............+..|++|+++.
T Consensus 145 ~~ED~~~~e~~Q~gl~s~~~~~~~l~~~E~~i~~f~~~~~~~ 186 (188)
T cd00680 145 LDEDIELCERIQRGLRSGAFRGGPLSPLEEGIRHFHRWLRRA 186 (188)
T ss_pred HHHHHHHHHHHhccccCCcCCCCCCCcccccHHHHHHHHHHh
Confidence 999999999999999987544333334456888888987754
No 45
>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.60 E-value=2.8e-14 Score=130.64 Aligned_cols=162 Identities=12% Similarity=0.071 Sum_probs=97.0
Q ss_pred EEEEEeecChhhhhhccCCCcccCccCccccccCCCC---------Cc-eeeeecCCC---CCCccccC---------CC
Q 015101 221 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV---------PS-LVKFLTPAS---GLQGYWDP---------YP 278 (413)
Q Consensus 221 ~~~~~~~~nwk~~~EN~~D~~H~~~~H~~t~~~~~~~---------~~-~~~~~~~~~---~~~~~~~~---------~~ 278 (413)
...++++||||+++||++|+||++++|++|++..... .. ......+.. ........ ..
T Consensus 3 ~~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (190)
T cd08885 3 REEEVWDTNWKVLAENFMEGYHLPGLHPGTLHPFMPAELSYFRPEDGRGFTRHKGTKHFNETIEPAHPPNPGLTEEWRRR 82 (190)
T ss_pred eeeeeccCCchhhHhhcCccccccccccchhhccCchhhcccccCCCcceeeeecccccccCccccCCCCCCCChhhhcc
Confidence 3467899999999999999999999999988642110 00 000011100 00000000 00
Q ss_pred ccceecCCeEEEEEeeeeCCCCcCCCCcccccceeEEEEEeecCCCCcEEEEeeeecchhhhc-cCchhHHHHHHHHHhH
Q 015101 279 IDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVL-KHVPFMQYLWRHFAEQ 357 (413)
Q Consensus 279 ~~~~f~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~ 357 (413)
....+.+||+++... + ....+..+.|+++++|++.+.++....... .........+..+...
T Consensus 83 ~~~~~iFPN~~i~~~----~-------------~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (190)
T cd08885 83 LVLFAIFPTHLLALT----P-------------DYVWWLSLLPEGAGRVRVRWGVLVAPEAADDPEAAEYIAELKALLDA 145 (190)
T ss_pred eEEEEECCcEEEEec----C-------------CeEEEEEEEecCCCeEEEEEEEEEcchhcccchhHHHHHHHHHHHHH
Confidence 112346788776432 1 123455678999999999887765322110 0111112222334578
Q ss_pred HHhhHHHHHHHHhhhccCCCCccccccCCCHHHHHHHHHHHH
Q 015101 358 VLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDA 399 (413)
Q Consensus 358 V~~ED~~ile~qq~~l~~~~~~~~~~~~~D~~~v~yRrwl~~ 399 (413)
|+.||+.++|.+|++|.++..........+.++..|.+|+.+
T Consensus 146 v~~ED~~~~e~~Q~Gl~S~~~~~g~l~~~E~~i~~fh~~l~~ 187 (190)
T cd08885 146 INDEDRLVVEGVQRGLGSRFAVPGRLSHLERPIWQFQRYLAS 187 (190)
T ss_pred HHHHHHHHHHHhcccccCCCCCCCCCCcccccHHHHHHHHHH
Confidence 999999999999999998654332223457888899999764
No 46
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=99.58 E-value=8.4e-15 Score=132.76 Aligned_cols=88 Identities=19% Similarity=0.374 Sum_probs=73.9
Q ss_pred CCCCeEEEE-ECCeeEEEEEcCCCcE--EEEecCCCCCCCCCCCCcccCCeEecCCCCeEEecCCCccccCCcccccccc
Q 015101 106 KDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKI 182 (413)
Q Consensus 106 ~~g~~~~~~-~~g~~vvv~R~~~G~i--~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~~G~~~~~P~~~~~~~~l 182 (413)
++|+...+. +.|.+.++++..+|++ +|++++|||.||+|.++..+ +.+.||+|||+||.+|..+..|. ...|
T Consensus 73 ~~g~~~~v~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~gc~l~~~~~~-~~~~CP~Hgs~Fd~tG~~~~gPa----~~~L 147 (178)
T PRK13474 73 PAGDRSLVQGLKGDPTYLVVEEDGTIASYGINAVCTHLGCVVPWNSGE-NKFQCPCHGSQYDATGKVVRGPA----PLSL 147 (178)
T ss_pred CCCCcEEEEEcCCCeEEEEEeCCCEEEEEEecCCCCCCCCccccccCC-CEEEecCcCCEECCCCCCccCCC----CCCC
Confidence 678777776 6777744444469999 67799999999999988754 69999999999999999998887 4589
Q ss_pred cccceeeeCCeEEEcC
Q 015101 183 KSLPCFEQEGMIWIWP 198 (413)
Q Consensus 183 ~~~~v~~~~G~I~v~~ 198 (413)
+.|++++.+|.|+|.+
T Consensus 148 ~~y~v~v~~g~v~v~~ 163 (178)
T PRK13474 148 ALVHVTVEDDKVLFSP 163 (178)
T ss_pred CeEeEEEECCEEEEEE
Confidence 9999999999999965
No 47
>cd08887 RHO_alpha_C_3 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.55 E-value=5.3e-14 Score=127.90 Aligned_cols=161 Identities=19% Similarity=0.223 Sum_probs=97.8
Q ss_pred EEEEeecChhhhhhccCCCcccCccCccccccCCCCC-ceeeeecCCC-------C-------CCccccCC-Cc-cceec
Q 015101 222 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVP-SLVKFLTPAS-------G-------LQGYWDPY-PI-DMEFR 284 (413)
Q Consensus 222 ~~~~~~~nwk~~~EN~~D~~H~~~~H~~t~~~~~~~~-~~~~~~~~~~-------~-------~~~~~~~~-~~-~~~f~ 284 (413)
..++++||||+++||++|+||++++|++|++...... ...+...+.. . ....|... .. ...+.
T Consensus 4 ~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~~~~~~~~g~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (185)
T cd08887 4 RRFDVAANWKLALDGFLEGYHFKVLHKNTIAPYFYDNLSVYDAFGPHSRIVFPRKSIESLRDLPEDEWDLRRHLTVIYTL 83 (185)
T ss_pred eeeecCCCceEehhhcccccccchhchhhhcccccCCceEEeccCCeeeeecchhhHHHHhcCChhHCCccCCeeEEEEE
Confidence 4678999999999999999999999999986421100 0001100000 0 00001100 00 12345
Q ss_pred CCeEEEEEeeeeCCCCcCCCCcccccceeEEEEEeecCCCCcEEEEeeeecchhhhccCc-hhHHHHHHHHH-hHHHhhH
Q 015101 285 PPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHV-PFMQYLWRHFA-EQVLNED 362 (413)
Q Consensus 285 ~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~-p~~~~~~~~~~-~~V~~ED 362 (413)
+||+++... + ....+..+.|.++++|.+.+.++.......... ......+ .+. ..|..||
T Consensus 84 FPN~~i~~~----~-------------~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~ED 145 (185)
T cd08887 84 FPNVSLLVQ----P-------------DHLEIIQIEPGSPDRTRVTVYLLIPPPPDTEEARAYWDKNW-DFLMAVVLDED 145 (185)
T ss_pred CCceEEEec----C-------------CeEEEEEEEcCCCCceEEEEEEEecCCCCcHHHHHHHHHHH-HHHHhhhHHHH
Confidence 787776432 1 134466679999999999887765432211111 1112222 233 6899999
Q ss_pred HHHHHHHhhhccCCCCccccccCCCHHHHHHHHHHHHH
Q 015101 363 LRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL 400 (413)
Q Consensus 363 ~~ile~qq~~l~~~~~~~~~~~~~D~~~v~yRrwl~~l 400 (413)
..++|.+|++|.++...+......+..+..|.+|+++.
T Consensus 146 ~~~~e~~Q~Gl~s~~~~~~~l~~~E~~i~~fh~~~~~~ 183 (185)
T cd08887 146 FEVAEEIQRGLASGANDHLTFGRNESALQHFHRWLERA 183 (185)
T ss_pred HHHHHHHhhhhhcCCCCceEeecCCHHHHHHHHHHHHH
Confidence 99999999999987654434446678888999997754
No 48
>cd08883 RHO_alpha_C_CMO-like C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of plant choline monooxygenase and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-
Probab=99.54 E-value=1.2e-13 Score=125.10 Aligned_cols=160 Identities=15% Similarity=0.163 Sum_probs=96.9
Q ss_pred EEEEEeecChhhhhhccCCCcccCccCccccccCCCCCceee-------eecCCCC-CCccccCCC--ccceecCCeEEE
Q 015101 221 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVK-------FLTPASG-LQGYWDPYP--IDMEFRPPCMVL 290 (413)
Q Consensus 221 ~~~~~~~~nwk~~~EN~~D~~H~~~~H~~t~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~--~~~~f~~P~~~~ 290 (413)
...+++++|||+++||++|+||++++|++|+........... ...+... ....++... ....+.+||+++
T Consensus 3 ~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN~~i 82 (175)
T cd08883 3 RREYVIECNWKVYVDNYLEGYHVPFAHPGLAAVLDYATYRTELFEYVSLQSAPARAEEGSFFYRLGNAALYAWIYPNLML 82 (175)
T ss_pred cEEeeeecCceEEehhcCCcccCcccchhHHhhcccCceEEEEcCcEEEEEecccCCCCccccccCcCeEEEEECCCEee
Confidence 346788999999999999999999999998854211000000 0011000 011121111 113456898876
Q ss_pred EEeeeeCCCCcCCCCcccccceeEEEEEeecCCCCcEEEEeeeecchhhhccCchhHHHHHHHHHhHHHhhHHHHHHHHh
Q 015101 291 STIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQ 370 (413)
Q Consensus 291 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~V~~ED~~ile~qq 370 (413)
... | ....++.+.|+++++|++.+.++..... ..........+. .+.|+.||..|+|.+|
T Consensus 83 ~~~----~-------------~~~~~~~~~P~~p~~t~~~~~~~~~~~~-~~~~~~~~~~~~--~~~v~~ED~~i~e~vQ 142 (175)
T cd08883 83 NRY----P-------------PGMDVNVVLPLGPERCKVVFDYFVDDSD-GSDEAFIAESIE--SDRVQKEDIEICESVQ 142 (175)
T ss_pred eec----C-------------CeEEEEEEEeCCCCcEEEEEEEEEeccc-cchhHHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 532 1 1233555789999999998887654221 111112222222 5789999999999999
Q ss_pred hhccCCCCc-cccccCCCHHHHHHHHHHHHH
Q 015101 371 ERMNNGANV-WNLPVGYDKLGVRYRLWRDAL 400 (413)
Q Consensus 371 ~~l~~~~~~-~~~~~~~D~~~v~yRrwl~~l 400 (413)
++|.++... ..+....+.++..|++|+++.
T Consensus 143 ~Gl~S~~~~~G~l~~~~E~~v~~Fh~~l~~~ 173 (175)
T cd08883 143 RGLESGAYDPGRFSPKRENGVHHFHRLLAQA 173 (175)
T ss_pred hhhcCCCCCCCCCCCccchHHHHHHHHHHHh
Confidence 999987542 223223477888899997754
No 49
>cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.50 E-value=4.2e-13 Score=124.70 Aligned_cols=167 Identities=14% Similarity=0.035 Sum_probs=99.2
Q ss_pred CceEeEEEEEEeecChhhhhhccCCCcccCccCcccccc-----CCCCCc-------eeeeecC---------CCC----
Q 015101 215 GFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK-----GWSVPS-------LVKFLTP---------ASG---- 269 (413)
Q Consensus 215 ~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~~H~~t~~~-----~~~~~~-------~~~~~~~---------~~~---- 269 (413)
.+++.+...++++||||+++||++|+||++++|+++... ....+. ......+ ..+
T Consensus 7 ~~~~~~~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (205)
T cd08884 7 NLKVAHRISYEVAANWKLVVENYRECYHCAGVHPELARSLSEFDDGGNPDPEAGGADFRGRRGPLRGGAESFTMDGKAVA 86 (205)
T ss_pred hcEEccceEEEEccCceehhHhCcccccCccccHHHHhhcccccccccccccccccceeeecccccCCceeecCCCCccc
Confidence 455666678899999999999999999999999976531 000000 0000000 000
Q ss_pred --CCcccc--CCCccceecCCeEEEEEeeeeCCCCcCCCCcccccceeEEEEEeecCCCCcEEEEeeeecchhhhccCch
Q 015101 270 --LQGYWD--PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVP 345 (413)
Q Consensus 270 --~~~~~~--~~~~~~~f~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p 345 (413)
..+..+ .......+.+||+++.... ....++.+.|+++++|++.+.++...........
T Consensus 87 p~~~~~~~~~~~~~~~~~lfPN~~~~~~~-----------------d~~~~~~~~P~~p~~t~~~~~~~~~~~~~~~~~~ 149 (205)
T cd08884 87 PPLPGLTEADDRGALYYTLYPNSFLHLHP-----------------DHVVTFRVLPLSPDETLVRCKWLVHPDAVEGVDY 149 (205)
T ss_pred CCCCCCCccccCceEEEEeCCcEEEEEcC-----------------CEEEEEEEEeCCCCceEEEEEEEECCchhccccc
Confidence 000000 0011233457877654321 2344666799999999999887654322111111
Q ss_pred hHHHHHHHHHhHHHhhHHHHHHHHhhhccCCCCccccccCCCHHHHHHHHHHHH
Q 015101 346 FMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDA 399 (413)
Q Consensus 346 ~~~~~~~~~~~~V~~ED~~ile~qq~~l~~~~~~~~~~~~~D~~~v~yRrwl~~ 399 (413)
..+ ....+.+.|..||..|+|.+|+++.++..........+.++..|.+|+.+
T Consensus 150 ~~~-~~~~~~~~v~~ED~~i~e~vQ~Gl~S~~~~~g~l~~~E~~v~~F~~~~~~ 202 (205)
T cd08884 150 DLD-DLVEVWDATNRQDWAICERNQRGVNSPAYRPGPYSPMEGGVLAFDRWYLE 202 (205)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHhcccccCCCcCCCCcCCccHHHHHHHHHHHH
Confidence 112 22345678999999999999999998754322222456788888888664
No 50
>cd08886 RHO_alpha_C_2 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.50 E-value=2.2e-13 Score=124.32 Aligned_cols=160 Identities=14% Similarity=0.040 Sum_probs=95.1
Q ss_pred EEEEEeecChhhhhhccCCCcccCccCccccccCCCCCceeeeecC-------CCCCC-cccc---CCCccceecCCeEE
Q 015101 221 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTP-------ASGLQ-GYWD---PYPIDMEFRPPCMV 289 (413)
Q Consensus 221 ~~~~~~~~nwk~~~EN~~D~~H~~~~H~~t~~~~~~~~~~~~~~~~-------~~~~~-~~~~---~~~~~~~f~~P~~~ 289 (413)
...++++||||+++||++|+||++++|+.+++.............. ..... .... .......+.+||++
T Consensus 3 ~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN~~ 82 (182)
T cd08886 3 RLTSEIKANWKNVVDNYLECYHCHTAHPDFVDSLDMDTYKHTTHGNYSSQMANYGSAENSEYSVKPDADFAFYWLWPNTM 82 (182)
T ss_pred eEEEEeecccEEEEecCCccccCcccChhHHhcccccccEEEecCcEEEEEeccccccccccccccCcceeEEEEeCCEE
Confidence 3567899999999999999999999999988542110110100000 00000 0000 01112345678887
Q ss_pred EEEeeeeCCCCcCCCCcccccceeEEEEEeecCCCCcEEEEeeeecchhhhccCchhHHHHHHHHHhHHH-hhHHHHHHH
Q 015101 290 LSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVL-NEDLRLVLG 368 (413)
Q Consensus 290 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~V~-~ED~~ile~ 368 (413)
++.. |+ .....++.+.|+++++|++.+.++..-. ..... ......+...|+ .||..++|.
T Consensus 83 i~~~----~~-----------~~~~~~~~~~P~~p~~t~~~~~~~~~~~--~~~~~--~~~~~~~~~~v~~~ED~~l~e~ 143 (182)
T cd08886 83 LNVY----PG-----------AGNMGVINIIPVDAETTLQHYDFYFRDE--ELTDE--EKELIEYYRQVLQPEDLELVES 143 (182)
T ss_pred EEee----CC-----------CCeEEEEEEEeCCCCeEEEEEEEEecCC--CccHH--HHHHHHHHHHhcchhhHHHHHH
Confidence 6542 11 0123456789999999999887664211 11111 111223567787 999999999
Q ss_pred HhhhccCCCCcc-ccc------cCCCHHHHHHHHHHHH
Q 015101 369 QQERMNNGANVW-NLP------VGYDKLGVRYRLWRDA 399 (413)
Q Consensus 369 qq~~l~~~~~~~-~~~------~~~D~~~v~yRrwl~~ 399 (413)
+|++|.++.... .+. ...+.++..|.+|+++
T Consensus 144 vQ~Gl~S~~~~~g~l~~~~~~~~~~E~~v~~fh~~l~~ 181 (182)
T cd08886 144 VQRGLKSRAFGQGRIVVDPSGSGISEHAVHHFHGLVLE 181 (182)
T ss_pred HhcccccCCCCCceeccCcccCCccchhHHHHHHHHhc
Confidence 999999865422 222 2457788899998763
No 51
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.
Probab=99.45 E-value=4.4e-13 Score=121.16 Aligned_cols=93 Identities=22% Similarity=0.290 Sum_probs=78.2
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcC----------------------------------CCcEEEEecCCCCC
Q 015101 95 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------------DGIPGCVQNTCAHR 140 (413)
Q Consensus 95 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~----------------------------------~G~i~a~~n~CpHr 140 (413)
.|+.| ..++|++|+.+.+.+.|.+++|+|.. +++++|++++|||.
T Consensus 40 ~~~~v-~l~eL~pG~~~~v~~~GkpI~I~~~t~~~~~~~~~~~~~~l~Dp~~~~~~~~~~~~~r~~~~~~~a~~~~CtH~ 118 (174)
T TIGR01416 40 APTEV-DVSKIQPGQQLTVEWRGKPVFIRRRTKKEIDALKALDLGALKDPNSEAQQPDYARVKRSGKPEWLVVIGICTHL 118 (174)
T ss_pred CcEEE-EHHHCCCCCeEEEEECCeEEEEEeCCHHHhhhhhccchhhcCCCcccccCcchhhhhhccCCcEEEEEeccCCC
Confidence 36677 78999999999999999999999851 48999999999999
Q ss_pred CCCCCCC-ccc-CCeEecCCCCeEEecCCCccccCCcccccccccccceeeeCC
Q 015101 141 ACPLHLG-SVN-EGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEG 192 (413)
Q Consensus 141 g~~L~~g-~~~-~~~l~CpyHgw~fd~~G~~~~~P~~~~~~~~l~~~~v~~~~G 192 (413)
||.+.+. ... .+.|.|||||++||.+|+.+..|+ +..|..||++..++
T Consensus 119 Gc~~~~~~~~~~~~~~~CPcHgs~Fd~~G~~~~gpa----~~~L~~~~~~~~~~ 168 (174)
T TIGR01416 119 GCIPTYGPEEGDKGGFFCPCHGSHYDTAGRVRKGPA----PLNLPVPPYKFLSD 168 (174)
T ss_pred CCccccccCCCCCCEEEeCCCCCEECCCCcEecCCC----CCCCCCCCEEEcCC
Confidence 9977643 322 468999999999999999998887 45799999976654
No 52
>PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols []. The complex has both hydroxylase and electron transfer components. The hydroxylase component is itself composed of two subunits: an alpha-subunit of about 50 kDa, and a beta-subunit of about 20 kDa. The electron transfer component is either composed of two subunits: a ferredoxin and a ferredoxin reductase or by a single bifunctional ferredoxin/reductase subunit. Sequence analysis of hydroxylase subunits of ring hydroxylating systems (including toluene, benzene and napthalene 1,2-dioxygenases) suggests they are derived from a common ancestor []. The alpha-subunit binds both a Rieske-like 2Fe-2S cluster and an iron atom: conserved Cys and His residues in the N-terminal region may provide 2Fe-2S ligands, while conserved His and Tyr residues may coordinate the iron. The beta subunit may be responsible for the substrate specificity of the dioxygenase system [].; GO: 0005506 iron ion binding, 0016708 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor, 0051537 2 iron, 2 sulfur cluster binding, 0019439 aromatic compound catabolic process, 0055114 oxidation-reduction process; PDB: 1WQL_A 3EN1_A 3EQQ_A 2CKF_A 2BMR_A 2BMQ_A 2BMO_A 2GBW_E 2GBX_C 2XRX_A ....
Probab=99.36 E-value=1.6e-12 Score=118.79 Aligned_cols=159 Identities=16% Similarity=0.129 Sum_probs=95.3
Q ss_pred EEEeecChhhhhhccCCCcccCccCccccccCCCCCc------eeeeecCCCCCC-------------cccc--------
Q 015101 223 VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPS------LVKFLTPASGLQ-------------GYWD-------- 275 (413)
Q Consensus 223 ~~~~~~nwk~~~EN~~D~~H~~~~H~~t~~~~~~~~~------~~~~~~~~~~~~-------------~~~~-------- 275 (413)
.++++||||+++||++|+||++++|+++++....... ......+..... ....
T Consensus 11 ~~~~~~NWK~~~EN~~e~YH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (209)
T PF00848_consen 11 RYEVDCNWKLAVENFLEGYHVPFLHPSTLGFFDPSNDEQAEIASVEFFGGHGSVWAGRMREEPQPEPSERRAWKGRPFPP 90 (209)
T ss_dssp HHHESS-HHHHHHHHHHCTTHHHHTHHHHHHHSCTTGGHHEEEEEEEESSTCEEETHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred EEEecccceEHHHhCcccccccccccchhhhhhccccccccccccccccccccccccccccccccccchhhhhhhhhccc
Confidence 4568999999999999999999999998653211111 111111111000 0000
Q ss_pred ------CCCccceecCCeEEEEEeeeeCCCCcCCCCcccccceeEEEEEeecCCCCcEEEEeeeecchhhhccCchhHHH
Q 015101 276 ------PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQY 349 (413)
Q Consensus 276 ------~~~~~~~f~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p~~~~ 349 (413)
.......+.+||+++... ++ ...+..+.|+++++|++.+..+...... .-+.+.+
T Consensus 91 ~~~~~~~~~~~~~~iFPn~~i~~~----~~-------------~~~~~~~~P~~p~~t~~~~~~~~~~~~~--~~~~~~~ 151 (209)
T PF00848_consen 91 GLPDDQRMGYRNYVIFPNLSIIVY----PD-------------HFTVRTIIPIGPDRTEVWSWWFVPKDEG--APPEFRE 151 (209)
T ss_dssp HHHHHHHTSEEEEEETTTEEEEE-----TT-------------TTEEEEEEEESTTEEEEEEEEEEETT----STHHHHH
T ss_pred cccccccccccceeeCCCEEEEec----cc-------------ccEEEEEEECCCCeEEEEEEEEEeCCcc--cchhhHH
Confidence 001123456888876532 11 1226677999999999998877643311 2222222
Q ss_pred HHHHHHhH---HHhhHHHHHHHHhhhccCCCC-ccccccCCCHHHHHHHHHHHHH
Q 015101 350 LWRHFAEQ---VLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDAL 400 (413)
Q Consensus 350 ~~~~~~~~---V~~ED~~ile~qq~~l~~~~~-~~~~~~~~D~~~v~yRrwl~~l 400 (413)
.+...... |+.||..++|++|+++.++.. ...+....|..+..|++|++++
T Consensus 152 ~~~~~~~~~~~~~~ED~~~~e~~Q~gl~s~~~~~~~~~~~~E~~v~~f~~~~~~~ 206 (209)
T PF00848_consen 152 ARIRNWDRFFGVFAEDIEIVERQQRGLRSRGFDPGRLSGTSERGVRHFHRWWRRY 206 (209)
T ss_dssp HHHHHHHHHHSTHHHHHHHHHHHHHHTTSSTSCTSEESSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 22222233 899999999999999988543 2224457889999999886643
No 53
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=99.25 E-value=4.4e-11 Score=106.62 Aligned_cols=68 Identities=16% Similarity=0.244 Sum_probs=53.8
Q ss_pred cCCCcEEEEecCCCCCCCCCCC---------------CcccCCeEecCCCCeEEec-CC-CccccCCcccccccccccce
Q 015101 125 GKDGIPGCVQNTCAHRACPLHL---------------GSVNEGRIQCPYHGWEYST-DG-KCEKMPSTQLRNVKIKSLPC 187 (413)
Q Consensus 125 ~~~G~i~a~~n~CpHrg~~L~~---------------g~~~~~~l~CpyHgw~fd~-~G-~~~~~P~~~~~~~~l~~~~v 187 (413)
+.+|+++|++++|||+||+|.. |...++.|.||+|||+||. +| ..+..|+. ..|..|.+
T Consensus 72 Gp~g~IvA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~~~~~i~CPcHgS~FD~~tGg~v~~GPA~----~pLp~~~L 147 (171)
T cd03475 72 GPNKSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLASKGAVIHCCCHGSTYDPYKGGVVLTGPAP----RPLPAVIL 147 (171)
T ss_pred CCCCEEEEEeCcCCCCCCcccccccccccccccccccccccCCEEEcCCCCCEEeCCCCCeEcCCCCC----CCcCEeEE
Confidence 3589999999999999998763 3345689999999999996 45 56656653 46888998
Q ss_pred eeeC--CeEEE
Q 015101 188 FEQE--GMIWI 196 (413)
Q Consensus 188 ~~~~--G~I~v 196 (413)
+..+ |.||+
T Consensus 148 ~~d~~~d~iyA 158 (171)
T cd03475 148 EYDSSTDDLYA 158 (171)
T ss_pred EEeCCCCcEEE
Confidence 7774 78886
No 54
>cd08880 RHO_alpha_C_ahdA1c-like C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp. strain P2 and related proteins. C-terminal catalytic domain of the large subunit (ahdA1c) of the AhdA3A4A2cA1c salicylate 1-hydroxylase complex from Sphingomonas sp. strain P2, and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). AhdA3A4A2cA1c is one of three known isofunctional salicylate 1-hydroxylase complexes in strain P2, involved in phenanthrene degradation, which catalyze the monooxygenation of salicylate, the metabolite of phenanthene degradation, to produce catechol. This complex prefers salicylate over other substituted salicylates; the other two salicylate 1-hydroxylases have different substrate preferences. RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative deg
Probab=98.98 E-value=1.5e-09 Score=102.27 Aligned_cols=138 Identities=17% Similarity=0.112 Sum_probs=78.0
Q ss_pred EEEEEeecChhhhhhccCCCcccCccCc--cccccCC-CCC--ceeee-------ecCCCCCC----c------------
Q 015101 221 EIVMELPIEHGLLLDNLLDLAHAPFTHT--STFAKGW-SVP--SLVKF-------LTPASGLQ----G------------ 272 (413)
Q Consensus 221 ~~~~~~~~nwk~~~EN~~D~~H~~~~H~--~t~~~~~-~~~--~~~~~-------~~~~~~~~----~------------ 272 (413)
..++.+++|||+.+||+.|.||++.+|. .||+... +.. ..+.. ..+..... +
T Consensus 3 ~~~~~~~~nwk~~~~~~~~~yh~~~~h~~~~t~g~~~~~~~~~~~~~~~g~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (222)
T cd08880 3 YYRQRIPGNWKLYAENVKDPYHASLLHLFFVTFGLWRADQKSSIIDDEHGRHSVMTSTKSGDDEAAEKDSEEIRSFRDDF 82 (222)
T ss_pred ceeeecCCCcHHHHHhccCcchHHHHhhhheeeecccCCCCCceEEecCCCceEEEEecCCCcccccchHHHHHHHhhcc
Confidence 3467889999999999999999999999 8886421 111 11110 00100000 0
Q ss_pred ------------cc-cCCCccceecCCeEEEEEeeeeCCCCcCCCCcccccceeEEEEEeecCCCCcEEEEeeeecchhh
Q 015101 273 ------------YW-DPYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFAS 339 (413)
Q Consensus 273 ------------~~-~~~~~~~~f~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~ 339 (413)
.| +.........+||+++... .....+..+.|+++++|++.+.++.. ..
T Consensus 83 ~l~d~~~~~~~~e~~~~~~~~~~~iFPNl~l~~~-----------------~~~l~v~~~~P~gpd~t~~~~~~~~~-~~ 144 (222)
T cd08880 83 TLLDPSLLDGRAEFDDDITLVIQSIFPSLVVQQI-----------------QNTLAVRHIIPKGPDSFELVWTYFGY-ED 144 (222)
T ss_pred ccCCHHHHhhhHhhcCCCceEEEEECCCEEEecc-----------------CCcEEEEEEEecCCCeEEEEEEEEEe-cC
Confidence 00 0000112335676665321 11234566789999999988766532 11
Q ss_pred hccCchhHHHH-HH--HHH---hHHHhhHHHHHHHHhhhccCCCCc
Q 015101 340 VLKHVPFMQYL-WR--HFA---EQVLNEDLRLVLGQQERMNNGANV 379 (413)
Q Consensus 340 ~~~~~p~~~~~-~~--~~~---~~V~~ED~~ile~qq~~l~~~~~~ 379 (413)
. .+..... .. .+. ..|..||..++|.+|+++.++...
T Consensus 145 ~---~~e~~~~~~~~~~~~gp~g~v~~ED~ei~e~vQ~Gl~s~~~~ 187 (222)
T cd08880 145 D---DEEMTRLRLRQANLVGPAGFVSMEDGEAIEFVQRGVEGDGGD 187 (222)
T ss_pred C---CHHHHHHHHHHhcccCCcCCCccchHHHHHHhCchhcCCCcc
Confidence 1 1111111 11 111 357889999999999999876543
No 55
>PF08417 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 This domain is found in bacterial and plant proteins to the C terminus of a Rieske 2Fe-2S domain (IPR005806 from INTERPRO). One of the proteins the domain is found in is Pheophorbide a oxygenase (PaO) which seems to be a key regulator of chlorophyll catabolism. Arabidopsis PaO (AtPaO) is a Rieske-type 2Fe-2S enzyme that is identical to Arabidopsis accelerated cell death 1 and homologous to lethal leaf spot 1 (LLS1) of maize [], in which the domain described here is also found. ; GO: 0010277 chlorophyllide a oxygenase [overall] activity, 0055114 oxidation-reduction process
Probab=98.96 E-value=2.7e-09 Score=86.52 Aligned_cols=87 Identities=37% Similarity=0.776 Sum_probs=64.8
Q ss_pred ecCCeEEEEEeeeeCCCCcCCCCcccccceeEEEEEeecCCCCcEEEEeeeecch-hhhccCchhHHHHHHHHH-hHHHh
Q 015101 283 FRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDF-ASVLKHVPFMQYLWRHFA-EQVLN 360 (413)
Q Consensus 283 f~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~-~~~~~~~p~~~~~~~~~~-~~V~~ 360 (413)
|.+||++.+..... ....++.+++++++|+|+++|+||+++++.++| ....+.+| .++.++. .+|++
T Consensus 1 F~pPc~v~~~~~~~--------~~~~~~~~~~~~~~~vP~~pG~~Rli~r~~~~f~~~~~k~~P---~wl~H~~~n~VLd 69 (92)
T PF08417_consen 1 FIPPCLVRSTEEGP--------KKKSCGKRLHQVFYCVPTGPGRCRLIWRFPRNFPAWIFKLIP---RWLSHLTSNKVLD 69 (92)
T ss_pred CCCCEEEEEecccc--------ccCCCCCEEEEEEEEEECCCCeEEEEEEehhhhhhHHhhcCC---HHHHHHhhCcccH
Confidence 67899987661110 112334567889999999999999999999998 34445566 4444444 89999
Q ss_pred hHHHHHHHHhhhccC-CCCcc
Q 015101 361 EDLRLVLGQQERMNN-GANVW 380 (413)
Q Consensus 361 ED~~ile~qq~~l~~-~~~~~ 380 (413)
||..+|..||+.+.. |.+.|
T Consensus 70 ~Dl~lLh~Qe~~l~~~g~~~W 90 (92)
T PF08417_consen 70 QDLYLLHGQERRLAREGADNW 90 (92)
T ss_pred HHHHHHHHHHHHHHHhccCcC
Confidence 999999999999987 66666
No 56
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=98.91 E-value=2e-09 Score=97.82 Aligned_cols=75 Identities=24% Similarity=0.369 Sum_probs=59.1
Q ss_pred CeeEEEEEcCCCc-----EEEEecCCCCCCCCCCC-CcccCCeEecCCCCeEEecCCCccccCCcccccccccccceeee
Q 015101 117 EEPWVIFRGKDGI-----PGCVQNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQ 190 (413)
Q Consensus 117 g~~vvv~R~~~G~-----i~a~~n~CpHrg~~L~~-g~~~~~~l~CpyHgw~fd~~G~~~~~P~~~~~~~~l~~~~v~~~ 190 (413)
+.+...+++.+|. +.|+...|+|.||.+.+ +....+.|.|||||++||.+|+.+..|+ ...|+.+++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~a~~~iCtHlGC~~~~~~~~~~~~~~CPCHGS~yd~~g~vv~GPA----~~~L~~~~~~~~ 158 (177)
T COG0723 83 GPKGGVTRDGDGGVGNKEIVAYSAICTHLGCTVPWNNAGAEGGFFCPCHGSRYDPDGGVVKGPA----PRPLPIPPLEYD 158 (177)
T ss_pred cccccceecccCCCCCccEEEEeeeccCCCCccCcccCCCCCeEEccCCCCeEcCCCCeeCCCC----CCCcCCceEEEe
Confidence 4445555555554 44999999999999999 5556789999999999999999999988 457888888666
Q ss_pred CCeEE
Q 015101 191 EGMIW 195 (413)
Q Consensus 191 ~G~I~ 195 (413)
.+-++
T Consensus 159 ~d~~~ 163 (177)
T COG0723 159 SDKLY 163 (177)
T ss_pred CCceE
Confidence 66333
No 57
>cd08882 RHO_alpha_C_MupW-like C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas fluorescens MupW and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-l
Probab=98.85 E-value=1.5e-08 Score=96.70 Aligned_cols=85 Identities=9% Similarity=-0.036 Sum_probs=53.3
Q ss_pred EEEEeec--CCCCcEEEEeeeecchhhhccCc------hhHHHHHHHH--HhHHHhhHHHHHHHHhhhccCCCCcccccc
Q 015101 315 QLHVCLP--SSRKKTRLLYRMSLDFASVLKHV------PFMQYLWRHF--AEQVLNEDLRLVLGQQERMNNGANVWNLPV 384 (413)
Q Consensus 315 ~~~~~~P--~s~~~tr~~~~~~~~~~~~~~~~------p~~~~~~~~~--~~~V~~ED~~ile~qq~~l~~~~~~~~~~~ 384 (413)
.++.+.| .++++|.+...++....+..... ..+... ..+ ...|++||..+++.+|++|.++........
T Consensus 146 ~~~r~~P~~~dpd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~~ED~~~~e~vQ~Gl~S~~~~~~~l~ 224 (243)
T cd08882 146 LVYRFRPHGDDPEKCIFDIWSLERYPEGAEPPEPPEEHEVFSDA-PELGGLGLVLDQDFSNLPAVQKGMHSRGFGGLVLA 224 (243)
T ss_pred EEEEeecCCCCCCeEEEEEEEEEECCCCCCCCCCCccccccccc-cccccccchhHhHHHHHHHHHHHhccCCCCCcccC
Confidence 3455677 59999998877664432211110 111111 122 368999999999999999998765432222
Q ss_pred CCC-HHHHHHHHHHHHH
Q 015101 385 GYD-KLGVRYRLWRDAL 400 (413)
Q Consensus 385 ~~D-~~~v~yRrwl~~l 400 (413)
... ..+..|.+|+++.
T Consensus 225 ~~EE~~I~~FH~~l~~~ 241 (243)
T cd08882 225 NQEESRIRHFHEVLDDY 241 (243)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 334 7888888987754
No 58
>cd08879 RHO_alpha_C_AntDO-like C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of anthranilate 1,2-dioxygenase (AntDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are
Probab=98.70 E-value=5.2e-08 Score=92.64 Aligned_cols=32 Identities=31% Similarity=0.263 Sum_probs=28.6
Q ss_pred EEEEEeecChhhhhhccCCCcccCccCccccc
Q 015101 221 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 252 (413)
Q Consensus 221 ~~~~~~~~nwk~~~EN~~D~~H~~~~H~~t~~ 252 (413)
..++.++||||+.+||+.|.||++++|.+++.
T Consensus 3 ~~~~~~~~nWK~~~en~~d~yH~~~~H~~~~~ 34 (237)
T cd08879 3 THRYRYRGNWKLQLENGTDGYHPPFVHASYVA 34 (237)
T ss_pred eeEEEeeceEEEEeeecCccccCccccHHHHH
Confidence 34678999999999999999999999998774
No 59
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=98.62 E-value=6.9e-08 Score=93.41 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=52.4
Q ss_pred cCCCcEEEEecCCCCCCCCCCCC----------------------------ccc---CCeEecCCCCeEEecC--CCccc
Q 015101 125 GKDGIPGCVQNTCAHRACPLHLG----------------------------SVN---EGRIQCPYHGWEYSTD--GKCEK 171 (413)
Q Consensus 125 ~~~G~i~a~~n~CpHrg~~L~~g----------------------------~~~---~~~l~CpyHgw~fd~~--G~~~~ 171 (413)
++++.|.||+.+|+|+||++..- .-. .+.|.|||||++||.+ |+.+.
T Consensus 173 Gp~~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~ 252 (321)
T TIGR03171 173 GPNKSIVAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEPDQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLT 252 (321)
T ss_pred CCCCCEEEEecccCcCCCCcchhhccCcccccccccccccccccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeC
Confidence 46789999999999999998331 001 2489999999999963 57999
Q ss_pred cCCcccccccccccceeee--CCeEEEc
Q 015101 172 MPSTQLRNVKIKSLPCFEQ--EGMIWIW 197 (413)
Q Consensus 172 ~P~~~~~~~~l~~~~v~~~--~G~I~v~ 197 (413)
+|+. ..|..++++.. .|.|++-
T Consensus 253 GPA~----rpLp~i~l~~d~~~~~l~Av 276 (321)
T TIGR03171 253 GPTV----RPLPAVILEWDSSTDYLYAI 276 (321)
T ss_pred CCCC----CCCCcceEEEeCCCCeEEEE
Confidence 9885 46788888665 4677763
No 60
>cd08881 RHO_alpha_C_NDO-like C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). This domain binds non-heme Fe(II). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents form the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are th
Probab=98.61 E-value=1.3e-07 Score=88.01 Aligned_cols=131 Identities=15% Similarity=0.057 Sum_probs=71.5
Q ss_pred EEEEEeecChhhhhhccC-CCcccCccCccccccCCCCCceeeeecCCCCCCccccC-C---------CccceecCCeEE
Q 015101 221 EIVMELPIEHGLLLDNLL-DLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDP-Y---------PIDMEFRPPCMV 289 (413)
Q Consensus 221 ~~~~~~~~nwk~~~EN~~-D~~H~~~~H~~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~f~~P~~~ 289 (413)
..++.++||||+++||++ |.||++++|.+++........ ........+.. +... . .....+.+||++
T Consensus 8 ~~~~~~~~NWK~~~en~~~d~yH~~~~H~~~~~~~~~~~~-~~~~~~~~g~~-~~~~~~GHg~~~~~~~~~~~~iFPN~~ 85 (206)
T cd08881 8 PQKWVIKANWKLAAENFAGDGYHTGTTHASALEAGLPPDA-ADLPPIDLGLQ-FTAPWHGHGLGFFLDSPQHGTIFPNLS 85 (206)
T ss_pred cEEEEecCcceehhhccccccccchhhhHHHHHhhCCccc-ccCCCCCCCcE-EEeCCCCeEEEEeccCcceeeECCcch
Confidence 467889999999999998 999999999988753211000 00000000000 0000 0 001122345443
Q ss_pred EEEeeeeCCCCcCCCCcccccceeEEEEEeecCCCCcEEEEeeeecchhhhccCchhHHHHHHHHHhH-------HHhhH
Q 015101 290 LSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQ-------VLNED 362 (413)
Q Consensus 290 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-------V~~ED 362 (413)
+... . ...+....|+++++|.+.+.++... ... +..+..+...... +-.||
T Consensus 86 ~~~~-----------------~-~~~~r~~~P~gp~~tev~~~~~~~k--da~--e~~~~~~~~~~~~~~gpaG~~~~DD 143 (206)
T cd08881 86 FLPG-----------------Y-FNTLRVWHPRGPDETEVWTWTLVDK--DAP--EEVKDRVRRQYTRTFGPAGTFEQDD 143 (206)
T ss_pred hhhc-----------------c-CceEEEEEeCCCCeEEEEEEEEecC--CCC--HHHHHHHHHHHHhccCCcCCCcCch
Confidence 3211 0 2345556899999999876655432 111 1122222222233 23499
Q ss_pred HHHHHHHhhhccC
Q 015101 363 LRLVLGQQERMNN 375 (413)
Q Consensus 363 ~~ile~qq~~l~~ 375 (413)
..++|.+|+++..
T Consensus 144 ~e~~e~~Q~g~~~ 156 (206)
T cd08881 144 GENWEEITRVARG 156 (206)
T ss_pred HHHHHHHHHhhcc
Confidence 9999999999874
No 61
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=98.56 E-value=6.8e-08 Score=86.75 Aligned_cols=75 Identities=27% Similarity=0.392 Sum_probs=63.8
Q ss_pred ecCCCCCCCeEEEEECCeeEEEE--------------------------EcCCCcEEEEecCCCCCCCCCCCCcccCCeE
Q 015101 101 FSTDLKDDTMVPFDCFEEPWVIF--------------------------RGKDGIPGCVQNTCAHRACPLHLGSVNEGRI 154 (413)
Q Consensus 101 ~~~el~~g~~~~~~~~g~~vvv~--------------------------R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l 154 (413)
..++||+|+-+++.-.|+|+++- |.++=++.++..+|+|.||-.....++-+.+
T Consensus 91 ~l~~IPeGk~~~~kwrGkpvfirhrt~~ei~~~r~V~~s~lrDPq~d~~rvk~~ewl~~igVCThLGCVp~~~AGd~gg~ 170 (210)
T KOG1671|consen 91 KLSDIPEGKTVAFKWRGKPVFIRHRTKAEIEGERNVPQSTLRDPQDDVDRVKKPEWLVVIGVCTHLGCVPIANAGDYGGY 170 (210)
T ss_pred eeecCCCCCCcceeccCCceEEeeccccccccccccchhhccCchhhhhhccCcceEEEEeeeccccccccccccccCce
Confidence 45778888888888889998883 3334567899999999999999888887889
Q ss_pred ecCCCCeEEecCCCccccCCc
Q 015101 155 QCPYHGWEYSTDGKCEKMPST 175 (413)
Q Consensus 155 ~CpyHgw~fd~~G~~~~~P~~ 175 (413)
.|||||+.||..|+...+|+.
T Consensus 171 ~CPCHGSHYdasGRIrkGPAP 191 (210)
T KOG1671|consen 171 YCPCHGSHYDASGRIRKGPAP 191 (210)
T ss_pred ecccccccccccCceecCCCC
Confidence 999999999999999999873
No 62
>PF11723 Aromatic_hydrox: Homotrimeric ring hydroxylase; InterPro: IPR021028 This entry represents the catalytic domain from a family of homotrimeric enzymes that hydroxylate aromatic compounds, including 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida and carbazole 1,9a-dioxygenase from Janthinobacterium. The catalytic domain is found C-termnial to the iron-sulphur-binding Rieske domain and is composed of antiparallel beta sheets and alpha helices []. It is part of a much larger superfamily of lipid binding domains which form a common fold that works as a versatile scaffold for binding bulky ligands [].; PDB: 1Z03_D 1Z01_E 1Z02_F 2DE6_A 2DE7_C 1WW9_A 2DE5_C 3GKQ_F 3GCF_L.
Probab=98.38 E-value=1.3e-06 Score=81.07 Aligned_cols=186 Identities=17% Similarity=0.216 Sum_probs=95.4
Q ss_pred CCceEeEEEEEEeecChhhhhhccCCCcccCccCccccc---cCCCCC---------ceeeeecCCCCCCccccCCCcc-
Q 015101 214 SGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA---KGWSVP---------SLVKFLTPASGLQGYWDPYPID- 280 (413)
Q Consensus 214 ~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~~H~~t~~---~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~- 280 (413)
.+..+. .....+.+||.+.+||.+|+.|+ |+|..+.- ..+..| ..++......++.|..+.+...
T Consensus 21 ~~~~~~-g~~~~~~~NWR~a~ENGfD~~H~-fiHk~s~~v~~~D~~lplG~~p~d~~~~t~~v~d~~gPKG~~~~~~~~~ 98 (240)
T PF11723_consen 21 DDIVIF-GMHREINANWRLAAENGFDPGHI-FIHKDSIWVHANDWALPLGFRPTDSDGMTKVVEDEDGPKGVMDRLTEHY 98 (240)
T ss_dssp TTEEEE-EEEEEESS-HHHHHHHHT-TTGG-GGGTT-HHHHHTTBEE-SEEEESSCCCEEEEEC-STSS-EEEE-CHHHE
T ss_pred CcceEE-eeeeeccccchhhhhhCcCcceE-EEecCcceEEecceecccccccCCcccceEEEecCCCCceeeecccccc
Confidence 345444 45678999999999999999998 99995421 111111 1112222223444433221000
Q ss_pred ------------ce--ecCCeEEEEEeeeeCCCCcCCCCcccccceeEEEEEeecCCCCcEEEEeeeecchhhhccCchh
Q 015101 281 ------------ME--FRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPF 346 (413)
Q Consensus 281 ------------~~--f~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p~ 346 (413)
.. -..|..+...+++--||-+...+.+ ..++.++-..+|+++++.+++..+...-. ..++...
T Consensus 99 ~pi~e~~i~g~~~~~~~~~~~~~~~~iSiwlPgVL~V~~~P--~p~~~qyEwYVPID~~~h~Y~q~l~~~~~-t~ee~~~ 175 (240)
T PF11723_consen 99 EPIFENEIDGEKVRNGNTNPVAVAMRISIWLPGVLMVENWP--YPDFTQYEWYVPIDEDTHRYFQLLGKVCP-TEEERKA 175 (240)
T ss_dssp EEESEEEETTEEEEE-BESSBE--SEEEEETTTEEEEES-S--STTEEEEEEEEEEETTEEEEEEEEEEE-S-SHHHHHH
T ss_pred eEEEecccCCceeecCCCCCceeEEEeeEeccceeecccCC--CCCeeEEEEEEEecccceeeEeEEeeecC-CHHHHHH
Confidence 00 0002222222223233321111000 14577787789999999999876654211 1111111
Q ss_pred ----HHHHHH-HHHhHHHhhHHHHHHHHhhhccCCCC-ccccccCCCHHHHHHHHHHHHHHcCC
Q 015101 347 ----MQYLWR-HFAEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKGA 404 (413)
Q Consensus 347 ----~~~~~~-~~~~~V~~ED~~ile~qq~~l~~~~~-~~~~~~~~D~~~v~yRrwl~~l~~g~ 404 (413)
++..|. .....+.+.|....|+.|+=...+.. ..|.....|+.++++||...+..+|.
T Consensus 176 f~~~f~~~~~~~~l~gFN~~D~wAREamq~fY~d~~Gw~~E~L~~~D~sIi~WRkLas~~nrgI 239 (240)
T PF11723_consen 176 FEYEFEEQWKPLALHGFNDDDIWAREAMQPFYADDTGWDREQLFEPDKSIIAWRKLASEHNRGI 239 (240)
T ss_dssp HHHHHHHTHHHHTTTTTTHHHHHHHHHHHHHHHTSHHHHH----GGGHHHHHHHHHHHHH-SEB
T ss_pred HHHHHHHHhHHhhccCCCchhHHHHHHhhhhhhccCCCCHHHhcCcchhHHHHHHHHHHhhccC
Confidence 112222 23456788999999999977665321 22567889999999999998887664
No 63
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=94.16 E-value=0.027 Score=57.88 Aligned_cols=38 Identities=34% Similarity=0.829 Sum_probs=34.0
Q ss_pred CCCCCCCCCcccCCeEecCCCCeEEe-cCCCccccCCcc
Q 015101 139 HRACPLHLGSVNEGRIQCPYHGWEYS-TDGKCEKMPSTQ 176 (413)
Q Consensus 139 Hrg~~L~~g~~~~~~l~CpyHgw~fd-~~G~~~~~P~~~ 176 (413)
|.|+||..|-...++++||+||..|+ .+|....-|+..
T Consensus 1 hygapl~~g~~s~g~v~cpwhgacfn~~~gdiedfP~~~ 39 (478)
T KOG1336|consen 1 HYGAPLAKGVLSRGRVRCPWHGACFNLSTGDIEDFPGLD 39 (478)
T ss_pred CCCcchhhccccCCcccccccceeecCCcCchhhCcCcc
Confidence 89999999977789999999999999 589998888754
No 64
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=61.07 E-value=16 Score=30.13 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHhhhhhhhc
Q 015101 1 MKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQ 46 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 46 (413)
+++|++++++++++..++..-.++.|..-=+...++|++.|.+|-.
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~ 77 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGM 77 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCC
Confidence 3567777888877777777777777763223357888888888744
No 65
>PRK14127 cell division protein GpsB; Provisional
Probab=60.92 E-value=13 Score=30.94 Aligned_cols=24 Identities=38% Similarity=0.419 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHH
Q 015101 3 KELAELQEDLAQAHRQVHISEARV 26 (413)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~ 26 (413)
+|+++|++++.+...++.-.++++
T Consensus 44 ~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 44 KEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444443333
No 66
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=56.58 E-value=21 Score=27.19 Aligned_cols=46 Identities=17% Similarity=0.369 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHhhhhhhhc
Q 015101 1 MKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQ 46 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 46 (413)
++.+++.|+.++.+...+....++.++.--+-..++|++.|+++-.
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm 67 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGM 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCC
Confidence 3577888888888888887777777754436677788888877643
No 67
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=52.71 E-value=89 Score=25.70 Aligned_cols=78 Identities=19% Similarity=0.355 Sum_probs=50.5
Q ss_pred CCCCCeEEEEE--CC--eeEEEEEcCCCcEEEEecCCCCCCCCCCCCc---ccCCeEecCCCCeEEec------CCCccc
Q 015101 105 LKDDTMVPFDC--FE--EPWVIFRGKDGIPGCVQNTCAHRACPLHLGS---VNEGRIQCPYHGWEYST------DGKCEK 171 (413)
Q Consensus 105 l~~g~~~~~~~--~g--~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~---~~~~~l~CpyHgw~fd~------~G~~~~ 171 (413)
|++|+...+.+ .| .++++++..+|.+.+..|.|- ++.+. .+++.++|-.=|-+|.. .|-|-.
T Consensus 2 v~Dgklh~y~y~~~G~~vrff~i~~~dg~~~va~daCe-----iC~~~GY~q~g~~lvC~~C~~~~~~~~ig~~~GGCNP 76 (102)
T PF10080_consen 2 VKDGKLHRYAYTDDGKEVRFFAIKKPDGSYRVAFDACE-----ICGPKGYYQEGDQLVCKNCGVRFNLPTIGGKSGGCNP 76 (102)
T ss_pred ccCCcEEEEEEcCCCEEEEEEEEECCCCCEEEEEEecc-----ccCCCceEEECCEEEEecCCCEEehhhcccccCCCCc
Confidence 45555555444 33 457888889999999999874 33322 25789999999999985 233332
Q ss_pred cCCcccccccccccceeeeCCeEEEcC
Q 015101 172 MPSTQLRNVKIKSLPCFEQEGMIWIWP 198 (413)
Q Consensus 172 ~P~~~~~~~~l~~~~v~~~~G~I~v~~ 198 (413)
+| ++-.+.+|.|-|..
T Consensus 77 ~P-----------~~~~~~~~~I~I~~ 92 (102)
T PF10080_consen 77 IP-----------LPYTVDGGNIIIDQ 92 (102)
T ss_pred cC-----------CceEecCCeEEEeH
Confidence 22 14466678887743
No 68
>PF09740 DUF2043: Uncharacterized conserved protein (DUF2043); InterPro: IPR018610 This entry consists of uncharacterised proteins of unknown function. They contain three conserved cysteines and a {CP}{y/l}{HG} motif.
Probab=51.35 E-value=9 Score=31.93 Aligned_cols=36 Identities=33% Similarity=0.616 Sum_probs=21.5
Q ss_pred CcEEEEecCCCCCCCCCCCCccc--CCeEecCCCCeEEecC
Q 015101 128 GIPGCVQNTCAHRACPLHLGSVN--EGRIQCPYHGWEYSTD 166 (413)
Q Consensus 128 G~i~a~~n~CpHrg~~L~~g~~~--~~~l~CpyHgw~fd~~ 166 (413)
|++--..-.|. +||-.|... -+.+.||+||=--+.|
T Consensus 63 g~~e~v~~~Cr---APL~~G~LC~RrD~~kCPfHG~IIpRD 100 (110)
T PF09740_consen 63 GEFEPVPHACR---APLPNGGLCPRRDRKKCPFHGKIIPRD 100 (110)
T ss_pred CccCcCchhhc---CCCCCCCcCCccCcccCCCCCcccCCC
Confidence 33333333453 566655432 3578999999887754
No 69
>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function. Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.
Probab=48.45 E-value=4.5 Score=32.39 Aligned_cols=52 Identities=4% Similarity=0.082 Sum_probs=39.2
Q ss_pred ccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCC
Q 015101 90 TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLH 145 (413)
Q Consensus 90 ~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~ 145 (413)
+.+...||.+.. ++|+-.+++..|+.+...-.......+|...-|++|+.++
T Consensus 3 ~dl~g~WYVLe~----~pGEHLvlealgqrls~iWtS~~~A~~F~~~~p~~GM~V~ 54 (103)
T PF11572_consen 3 PDLSGTWYVLED----EPGEHLVLEALGQRLSGIWTSRELAQAFLARHPELGMRVS 54 (103)
T ss_dssp --TSSSEEEEES----STT-BEEEEETTEEEEEEBSSHHHHHHHHHTSTSS--EEE
T ss_pred CCcccceEEecC----CCCceeeHHHHhhhHHhheecHHHHHHHHHhCcccCcEee
Confidence 445778999865 5899999999999998887777777788888999888765
No 70
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=46.40 E-value=39 Score=26.20 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHhhhhhhhc
Q 015101 2 KKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQ 46 (413)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 46 (413)
..+++.++.++.+...+....+..++ .|+...+++++.+++|-.
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~~ei~-~l~~~~rIe~~Ar~~lgM 73 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQLEVA-ELSRHERIEKIAKKQLGM 73 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHhcCC
Confidence 45777788888777777666666665 677788888898888743
No 71
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=46.27 E-value=37 Score=33.65 Aligned_cols=44 Identities=25% Similarity=0.457 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHhhhhhh
Q 015101 1 MKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 44 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (413)
|++++.+|+++|.+...+++++.+++.-+..|-+=+++|..+.=
T Consensus 180 Lqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddan 223 (323)
T PF08537_consen 180 LQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDAN 223 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 57899999999999999999999999988888777777666443
No 72
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=45.64 E-value=35 Score=30.43 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=29.9
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhHHHHHH--HHhHHHHHHHh
Q 015101 1 MKKELAELQEDLAQAHRQVHISEARVAT--ALDKLAYMEAL 39 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 39 (413)
|++||+.|+++++.|..+=-+|||+=.+ .-.|+.++++.
T Consensus 39 L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~~ 79 (160)
T PRK06342 39 LEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLAAR 79 (160)
T ss_pred HHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999998899866443 33567776643
No 73
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=43.81 E-value=45 Score=25.13 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHH
Q 015101 1 MKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 37 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (413)
|+.+++.+++|-++-..+......||+.-+++|--||
T Consensus 26 Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 26 LRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 4667777788877778888888888888888887665
No 74
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=37.42 E-value=38 Score=27.02 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHH---H-hhhhhhhcCCCCCCcccccCCCCCCchhhhh
Q 015101 3 KELAELQEDLAQAHRQVHISEARVATALDKLAYME---A-LVNDRLLQDRHTSGTDQTCASPSTSKQSLDI 69 (413)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 69 (413)
|.|++|++|+.++..++...+-+...--++...++ + -.+.+|..-++.-++.+.-+...|+.++|..
T Consensus 1 k~Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~eRK~RtHRLi~rGa~lEsi~~e~~~lT~~E~~~l 71 (86)
T PF12958_consen 1 KTLEELQAEIEKAEKKLEQAEHKIKQLENRKKKLEKKERKERTHRLIERGAILESIFPEPKDLTNDEFYEL 71 (86)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchhcCHHHHHHH
Confidence 45788888888888888777777777777777765 2 2334444333322444444555566665554
No 75
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=35.47 E-value=28 Score=32.08 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=19.2
Q ss_pred ChHHHHHHHHHHHHHHhhhhh
Q 015101 1 MKKELAELQEDLAQAHRQVHI 21 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (413)
||+||++|++++.++......
T Consensus 101 LkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 101 LKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999988776
No 76
>KOG3132 consensus m3G-cap-specific nuclear import receptor (Snurportin1) [RNA processing and modification]
Probab=32.97 E-value=47 Score=31.68 Aligned_cols=75 Identities=21% Similarity=0.183 Sum_probs=41.7
Q ss_pred CCcccccccCCCCCccccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcc----
Q 015101 74 LPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV---- 149 (413)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~---- 149 (413)
-+++.+-++.....++..+...|+.|+. |.|+ +.+.+.....-+.+.++| .|-||--.+..|..
T Consensus 96 ~yA~qlMLsEWliDvP~~LsqdW~vv~~----PvGK-R~lvVaSrG~Tvay~k~G-------~~v~rF~S~LPGGnrr~~ 163 (325)
T KOG3132|consen 96 WYAKQLMLSEWLIDVPDNLSQDWYVVAR----PVGK-RCLVVASRGTTVAYVKNG-------STVHRFPSALPGGNRRKG 163 (325)
T ss_pred HHHHHhhhHHHhccCccccCcceEEEEe----ecCc-eEEEEecCCceEEEecCC-------eeEeeccccCCCCCcCCC
Confidence 3455555566667778888888998864 4454 233333222223333344 67777655554421
Q ss_pred --cC-CeEecCCCC
Q 015101 150 --NE-GRIQCPYHG 160 (413)
Q Consensus 150 --~~-~~l~CpyHg 160 (413)
++ ..+.|-||-
T Consensus 164 ~a~~ytILDCIy~e 177 (325)
T KOG3132|consen 164 PANSYTILDCIYHE 177 (325)
T ss_pred Ccccceeeeeeecc
Confidence 11 257899986
No 77
>PF04698 Rab_eff_C: Rab effector MyRIP/melanophilin C-terminus; InterPro: IPR006788 MOBP is abundantly expressed in central nervous system myelin, and shares several characteristics with myelin basic protein (MBP), in terms of regional distribution and function. MOBP has been shown to be essential for normal arrangement of the radial component in central nervous system myelin [, ].
Probab=32.66 E-value=66 Score=35.27 Aligned_cols=35 Identities=31% Similarity=0.466 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHH
Q 015101 3 KELAELQEDLAQAHRQVHISEARVATALDKLAYME 37 (413)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (413)
.||.+|.++++-|-.|||.+|..||.+-+|++-+.
T Consensus 587 ~el~~le~~va~aaa~vq~~e~~~s~i~~ri~al~ 621 (714)
T PF04698_consen 587 SELSELEDQVASAAAQVQQAESEVSDIESRIAALS 621 (714)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 58999999999999999999999999999999865
No 78
>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=32.12 E-value=1.1e+02 Score=31.76 Aligned_cols=38 Identities=16% Similarity=0.402 Sum_probs=29.4
Q ss_pred CCCeEEEEECCeeEEEEEcCC----CcEEEEecCCCCCCCCC
Q 015101 107 DDTMVPFDCFEEPWVIFRGKD----GIPGCVQNTCAHRACPL 144 (413)
Q Consensus 107 ~g~~~~~~~~g~~vvv~R~~~----G~i~a~~n~CpHrg~~L 144 (413)
+|+-..+.|.-.+|++|+|.+ |+.+=-...|.|---.+
T Consensus 167 dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKM 208 (520)
T KOG2270|consen 167 DGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKM 208 (520)
T ss_pred CCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHH
Confidence 577789999999999999874 77776666888744333
No 79
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=31.94 E-value=1.1e+02 Score=23.21 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhH-----HHHHHHHhHHHHHHHhhh
Q 015101 1 MKKELAELQEDLAQAHRQVHISE-----ARVATALDKLAYMEALVN 41 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 41 (413)
|+++|.+|++||.+-.-|-...+ .++...-..+|.+..+.+
T Consensus 17 L~~~l~elk~eLf~LR~q~~~~~~l~n~~~ir~~Rk~IARi~Tvl~ 62 (69)
T PRK14549 17 REEKLEELKLELLKERAQAAMGGAPENPGRIREIRRTIARILTIQR 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHH
Confidence 46778888888887776655554 345555555555554443
No 80
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=31.13 E-value=93 Score=30.17 Aligned_cols=36 Identities=33% Similarity=0.515 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHH
Q 015101 2 KKELAELQEDLAQAHRQVHISEARVATALDKLAYME 37 (413)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (413)
++||..++|++.++...+.-...|+...-.||++++
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999876
No 81
>smart00352 POU Found in Pit-Oct-Unc transcription factors.
Probab=31.05 E-value=1e+02 Score=23.97 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHhH
Q 015101 3 KELAELQEDLAQAHRQVHISEARVATALDK 32 (413)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (413)
+||+.+-+.+.++..+..+||+-|...+..
T Consensus 7 ~ele~~~~~lk~~R~~lGLTQ~dvA~~lg~ 36 (75)
T smart00352 7 RELEAFAKTFKQRRIKLGFTQADVGLALGA 36 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 588899999999999999999999988874
No 82
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=30.71 E-value=1.4e+02 Score=22.80 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 015101 1 MKKELAELQEDLAQAHRQVHISEARVATAL 30 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (413)
||++|...+.||+.|=||-- ..-||-.-|
T Consensus 27 LRk~l~~~rqELs~aLYq~D-AA~RViArl 55 (70)
T PF08606_consen 27 LRKQLDQTRQELSHALYQHD-AACRVIARL 55 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHh-HHHHHHHHH
Confidence 68999999999999998854 445554333
No 83
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=30.08 E-value=1.1e+02 Score=22.13 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=16.1
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhH
Q 015101 1 MKKELAELQEDLAQAHRQVHISE 23 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (413)
|.++|.+|.+||.+.+-|-..++
T Consensus 11 L~~~l~~l~~elf~Lr~q~~~~~ 33 (57)
T cd00427 11 LQEKLDELKKELFNLRFQKATGQ 33 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC
Confidence 45678888888887776655554
No 84
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=29.00 E-value=30 Score=25.58 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=12.7
Q ss_pred CCeEecCCCCeEEecC
Q 015101 151 EGRIQCPYHGWEYSTD 166 (413)
Q Consensus 151 ~~~l~CpyHgw~fd~~ 166 (413)
.-+|.||-||-.....
T Consensus 30 PvtI~CP~HG~~~~s~ 45 (60)
T PF05265_consen 30 PVTIRCPKHGNFTCST 45 (60)
T ss_pred ceEEECCCCCcEEecc
Confidence 4589999999887654
No 85
>PF14920 MTBP_C: MDM2-binding
Probab=25.35 E-value=29 Score=32.81 Aligned_cols=16 Identities=44% Similarity=0.812 Sum_probs=14.3
Q ss_pred CeEecCCCCeEEecCC
Q 015101 152 GRIQCPYHGWEYSTDG 167 (413)
Q Consensus 152 ~~l~CpyHgw~fd~~G 167 (413)
+..+|-|||-.|.+|.
T Consensus 15 ka~~chYHgieycLD~ 30 (251)
T PF14920_consen 15 KASVCHYHGIEYCLDD 30 (251)
T ss_pred hhhccccCCceeeccc
Confidence 5789999999999877
No 86
>PRK14147 heat shock protein GrpE; Provisional
Probab=24.24 E-value=1.3e+02 Score=27.14 Aligned_cols=35 Identities=14% Similarity=0.297 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHH
Q 015101 1 MKKELAELQEDLAQAHRQVHISEARVATALDKLAY 35 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (413)
|++|+++|++.|.++.....+-+.|..........
T Consensus 30 l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~ 64 (172)
T PRK14147 30 LRSEIALVKADALRERADLENQRKRIARDVEQARK 64 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777888887777777777765555444
No 87
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=23.72 E-value=62 Score=27.89 Aligned_cols=29 Identities=24% Similarity=0.652 Sum_probs=24.1
Q ss_pred EecCCCCCCCCCCCCcccCCeEecCCCCeEEe
Q 015101 133 VQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS 164 (413)
Q Consensus 133 ~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd 164 (413)
+...||-=|+||-. .++.+.||-||-++.
T Consensus 27 L~~hCp~Cg~PLF~---KdG~v~CPvC~~~~~ 55 (131)
T COG1645 27 LAKHCPKCGTPLFR---KDGEVFCPVCGYREV 55 (131)
T ss_pred HHhhCcccCCccee---eCCeEECCCCCceEE
Confidence 34579999999997 468999999998776
No 88
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=23.36 E-value=93 Score=27.64 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhhhh
Q 015101 4 ELAELQEDLAQAHRQVH 20 (413)
Q Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (413)
+..+||.|+.+.+.+.+
T Consensus 41 ~~~~l~~Ei~~l~~E~~ 57 (161)
T PF04420_consen 41 EQRQLRKEILQLKRELN 57 (161)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555544444
No 89
>COG3027 zapA Cell division protein ZapA (stimulator of FtsZ polymerization and Z-ring component) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.10 E-value=1.5e+02 Score=24.44 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=28.3
Q ss_pred HHHHHHHHHHH----HHHhhhhhhHHHHHHHHhHHHHH
Q 015101 3 KELAELQEDLA----QAHRQVHISEARVATALDKLAYM 36 (413)
Q Consensus 3 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 36 (413)
-||..|++.+. ...++.+.++.++..+|.+.++-
T Consensus 61 ~eL~~l~~k~~~~~~~~~q~i~~~~~~~~~Al~~~a~~ 98 (105)
T COG3027 61 HELLKLKEKLRDIEASLEQRIRKLDQALENALTTLAQR 98 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888 67888888889999999888773
No 90
>PRK09039 hypothetical protein; Validated
Probab=22.49 E-value=1.5e+02 Score=29.81 Aligned_cols=35 Identities=29% Similarity=0.307 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHH
Q 015101 3 KELAELQEDLAQAHRQVHISEARVATALDKLAYME 37 (413)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (413)
++|++++.+++++|.++....+.++.--..++.++
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le 157 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALE 157 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555554444444443
No 91
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=22.37 E-value=1.3e+02 Score=23.30 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 015101 2 KKELAELQEDLAQAHRQVHISEARVAT 28 (413)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (413)
|.|...+++-++++..++...|+||..
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~ 75 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAA 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888888888888888764
No 92
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.30 E-value=1.3e+02 Score=28.00 Aligned_cols=35 Identities=9% Similarity=0.175 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHH
Q 015101 1 MKKELAELQEDLAQAHRQVHISEARVATALDKLAY 35 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (413)
|++||++|+++++.+++++....+.+.+.+....+
T Consensus 98 le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~ 132 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDS 132 (206)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
No 93
>TIGR02497 yscI_hrpB_dom type III secretion apparatus protein, YscI/HrpB, C-terminal domain. This model represents the conserved C-terminal domain of a protein conserved in across species in the bacterial type III secretion apparatus. This protein is designated YscI (Yop proteins translocation protein I) in Yersinia and HrpB (hypersensitivity response and pathogenicity protein B) in plant pathogens such as Pseudomonas syringae.
Probab=22.24 E-value=2.1e+02 Score=19.26 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhH---HHHHHHHhHHHHH
Q 015101 3 KELAELQEDLAQAHRQVHISE---ARVATALDKLAYM 36 (413)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 36 (413)
+++..+|..+.++--++-+.. .+++++++||.-|
T Consensus 2 ~~ll~~Q~~l~~~tv~~dL~AK~ag~~sQsvnKL~~m 38 (39)
T TIGR02497 2 EDLLQMQRALMQATVQVDLTAKVAGAMSQAVNKLVNM 38 (39)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHcc
Confidence 467778888888888877664 4566999998764
No 94
>PF15567 Imm19: Immunity protein 19
Probab=21.92 E-value=49 Score=26.43 Aligned_cols=46 Identities=9% Similarity=0.011 Sum_probs=32.9
Q ss_pred ccCceEEeeecCCC-CCCCeEEEEECCeeEEEEEcCCCcEEEEecCCC
Q 015101 92 LKNFWFPVAFSTDL-KDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCA 138 (413)
Q Consensus 92 ~~~~W~~v~~~~el-~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~Cp 138 (413)
...+|++-+.+.+. ..|++...-++.-+| |....+|.++.+.+.+|
T Consensus 31 ~~~GW~f~~~s~~fl~tgd~~~~L~gn~pv-vV~~~~g~~~~~~~~~p 77 (88)
T PF15567_consen 31 FPYGWVFPYQSVEFLETGDPRDMLAGNAPV-VVDKDGGEIHFLGTAPP 77 (88)
T ss_pred ecceeEEEeehHHHHhcCCHHHhccCCccE-EeeCCCCcEEecCCCCc
Confidence 45689999988884 568865554445554 44557999998888776
No 95
>PRK14139 heat shock protein GrpE; Provisional
Probab=21.01 E-value=1.6e+02 Score=26.88 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHH
Q 015101 1 MKKELAELQEDLAQAHRQVHISEARVATALDKLAY 35 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (413)
|++++++|++.|.++.....+...|+.........
T Consensus 44 le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~ 78 (185)
T PRK14139 44 AEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHK 78 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888888865555444
No 96
>PRK09039 hypothetical protein; Validated
Probab=20.11 E-value=1.6e+02 Score=29.59 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHH
Q 015101 2 KKELAELQEDLAQAHRQVHISEARVATALDKLAYM 36 (413)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (413)
+.|++.|.+++++....+..+|++-...=.++..+
T Consensus 143 ~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 143 NQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333333333
No 97
>PRK14164 heat shock protein GrpE; Provisional
Probab=20.08 E-value=1.7e+02 Score=27.51 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=27.5
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHH
Q 015101 1 MKKELAELQEDLAQAHRQVHISEARVATALDKLA 34 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (413)
|+++|++|.+.|.++.....+.+.|.........
T Consensus 82 le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~ 115 (218)
T PRK14164 82 VEAQLAERTEDLQRVTAEYANYRRRTERERQAII 115 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999875554443
No 98
>PRK14155 heat shock protein GrpE; Provisional
Probab=20.03 E-value=1.7e+02 Score=27.27 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHH
Q 015101 1 MKKELAELQEDLAQAHRQVHISEARVATALDKLAY 35 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (413)
|++++++|++.|.+++....+-+.|......+...
T Consensus 25 le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~ 59 (208)
T PRK14155 25 LKAEVAALKDQALRYAAEAENTKRRAEREMNDARA 59 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888888888766555443
Done!