Query 015101
Match_columns 413
No_of_seqs 363 out of 2351
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 06:42:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gke_A DDMC; rieske cluster, n 100.0 1.8E-54 6.2E-59 431.7 20.9 308 89-407 2-342 (349)
2 3n0q_A Putative aromatic-ring 100.0 8.8E-46 3E-50 375.2 23.9 311 54-401 17-398 (409)
3 3vca_A Ring-hydroxylating diox 100.0 1.9E-45 6.4E-50 373.1 22.0 310 55-401 20-401 (412)
4 1z01_A 2-OXO-1,2-dihydroquinol 100.0 1.3E-44 4.6E-49 371.5 25.3 308 62-404 25-408 (446)
5 2zyl_A Possible oxidoreductase 100.0 1.5E-44 5.2E-49 364.6 24.6 300 89-403 19-339 (386)
6 2de6_A Terminal oxygenase comp 100.0 2.8E-44 9.5E-49 363.6 21.4 298 89-405 22-377 (392)
7 3gcf_A Terminal oxygenase comp 100.0 2.6E-40 9.1E-45 329.8 23.8 301 89-408 28-384 (394)
8 3gkq_A Terminal oxygenase comp 100.0 4.4E-40 1.5E-44 327.4 24.3 299 90-406 26-379 (389)
9 2gbw_A Biphenyl 2,3-dioxygenas 100.0 8.2E-40 2.8E-44 336.8 16.8 180 54-252 13-217 (454)
10 2bmo_A Oxygenase-alpha NBDO; n 100.0 8.7E-40 3E-44 336.0 17.0 180 55-253 12-217 (447)
11 2b1x_A Naphthalene dioxygenase 100.0 3.5E-39 1.2E-43 333.4 17.6 181 53-252 20-226 (470)
12 3gzx_A Biphenyl dioxygenase su 100.0 9.3E-39 3.2E-43 327.5 11.8 180 54-252 33-244 (457)
13 1uli_A Biphenyl dioxygenase la 100.0 1.1E-37 3.7E-42 321.3 14.5 179 54-251 31-234 (460)
14 2qpz_A Naphthalene 1,2-dioxyge 99.9 1E-27 3.6E-32 197.4 12.5 100 95-199 3-103 (103)
15 1fqt_A Rieske-type ferredoxin 99.9 2.6E-27 9E-32 198.0 13.6 102 95-201 5-108 (112)
16 2i7f_A Ferredoxin component of 99.9 7.1E-28 2.4E-32 200.2 10.0 102 95-201 3-106 (108)
17 1vm9_A Toluene-4-monooxygenase 99.9 1.8E-27 6.2E-32 198.7 12.4 104 95-203 1-106 (111)
18 2de6_D Ferredoxin component of 99.9 7.4E-28 2.5E-32 202.4 9.7 104 93-201 2-107 (115)
19 3dqy_A Toluene 1,2-dioxygenase 99.9 1.8E-27 6.3E-32 197.0 9.6 101 95-200 1-102 (106)
20 3gce_A Ferredoxin component of 99.9 1.2E-26 4E-31 196.9 12.4 102 95-201 10-114 (121)
21 3c0d_A Putative nitrite reduct 99.9 8E-27 2.7E-31 197.2 10.3 103 94-201 4-112 (119)
22 2jo6_A Nitrite reductase [NAD( 99.9 1.3E-26 4.6E-31 194.0 11.5 100 95-199 6-112 (113)
23 2jza_A Nitrite reductase [NAD( 99.9 3.7E-26 1.2E-30 196.2 13.3 104 95-203 3-113 (130)
24 4aiv_A Probable nitrite reduct 99.9 6E-26 2.1E-30 191.7 9.2 101 94-199 8-116 (119)
25 3d89_A Rieske domain-containin 99.9 2.4E-26 8.2E-31 203.6 6.9 110 92-202 13-137 (157)
26 4aay_B AROB; oxidoreductase, r 99.9 1E-23 3.6E-28 189.2 9.3 144 32-197 3-161 (175)
27 1rie_A Rieske iron-sulfur prot 99.9 3.8E-22 1.3E-26 170.8 11.7 97 95-196 5-128 (129)
28 1rfs_A Rieske protein; iron-su 99.9 3.7E-22 1.3E-26 173.0 6.6 102 93-199 19-124 (139)
29 1g8k_B Arsenite oxidase; molyb 99.9 1.6E-21 5.4E-26 167.8 10.2 97 96-197 8-119 (133)
30 3azc_A Cytochrome B6-F complex 99.7 1.3E-21 4.4E-26 167.8 0.0 97 100-201 21-121 (133)
31 3cx5_E Cytochrome B-C1 complex 99.8 2.4E-19 8.3E-24 162.4 11.7 98 94-196 61-184 (185)
32 2qjy_C Ubiquinol-cytochrome C 99.8 5.9E-19 2E-23 160.2 11.8 96 96-196 49-186 (187)
33 1pp9_E Ubiquinol-cytochrome C 99.8 5.8E-19 2E-23 161.1 10.8 95 98-196 74-195 (196)
34 2nwf_A Ubiquinol-cytochrome C 99.8 7.5E-19 2.6E-23 152.3 11.0 93 100-196 6-140 (141)
35 1nyk_A Rieske iron-sulfur prot 99.8 8.2E-19 2.8E-23 156.0 9.2 98 101-203 26-151 (165)
36 1vf5_D Rieske iron-sulfur prot 99.7 3.2E-19 1.1E-23 161.1 2.8 92 102-198 70-164 (179)
37 1jm1_A Rieske iron-sulfur prot 99.6 1.6E-17 5.4E-22 152.5 0.6 84 111-198 56-166 (204)
38 3twe_A Alpha4H; unknown functi 52.5 9.9 0.00034 21.7 2.2 18 2-19 7-24 (27)
39 3pp5_A BRK1, protein brick1; t 36.3 36 0.0012 25.2 3.7 27 2-28 44-70 (73)
40 2q0o_C Probable transcriptiona 34.9 28 0.00095 27.5 3.1 34 4-37 66-99 (107)
41 2yy0_A C-MYC-binding protein; 31.7 36 0.0012 23.5 2.9 23 2-24 25-47 (53)
42 3p8c_E Probable protein brick1 29.6 40 0.0014 25.1 3.0 27 2-28 44-70 (75)
43 3he5_B Synzip2; heterodimeric 29.0 1.2E+02 0.0042 19.7 5.0 37 1-37 8-44 (52)
44 2w6b_A RHO guanine nucleotide 28.9 75 0.0025 22.0 4.0 33 1-33 15-50 (56)
45 3u1c_A Tropomyosin alpha-1 cha 27.1 98 0.0034 24.1 5.2 32 3-34 51-82 (101)
46 4g3b_A Alpha4F3D; alpha helix, 24.2 71 0.0024 18.0 2.6 17 3-19 8-24 (26)
47 2rjz_A PILO protein; structura 24.2 85 0.0029 26.2 4.6 34 1-35 20-53 (147)
48 1fmh_A General control protein 24.2 84 0.0029 18.7 3.1 24 4-27 2-25 (33)
49 3m91_A Proteasome-associated A 23.1 1.8E+02 0.0062 19.8 5.6 36 3-38 9-44 (51)
50 3u59_A Tropomyosin beta chain; 22.3 1.4E+02 0.0047 23.1 5.2 33 2-34 50-82 (101)
51 3sjb_C Golgi to ER traffic pro 21.3 59 0.002 25.2 2.7 33 1-33 54-86 (93)
52 4i0x_B ESAT-6-like protein MAB 20.4 1.1E+02 0.0039 23.3 4.4 25 11-35 57-81 (103)
53 3u1c_A Tropomyosin alpha-1 cha 20.3 1.2E+02 0.0043 23.5 4.5 25 3-27 58-82 (101)
No 1
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=100.00 E-value=1.8e-54 Score=431.69 Aligned_cols=308 Identities=24% Similarity=0.430 Sum_probs=236.3
Q ss_pred cccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEecCCC
Q 015101 89 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 168 (413)
Q Consensus 89 ~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~~G~ 168 (413)
..++++.|++||+++|| +|+++.++++|++|+|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.||+
T Consensus 2 ~~~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~~~G~v~a~~n~CpHrg~~L~~G~~~~~~i~CpyHgw~fd~~G~ 80 (349)
T 3gke_A 2 ATFVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVNGHLQCPYHGLEFDGGGQ 80 (349)
T ss_dssp CCCCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCGGGCEEETTEEECTTTCCEECTTCC
T ss_pred CcccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEcCCCcEEEEeCcCCCCCcCCccCCccceEEEECCCCCEEcCCCC
Confidence 35678999999999999 89999999999999999999999999999999999999999998999999999999999999
Q ss_pred ccccCC-cc--cccccccccceeeeCCeEEEcCCCCC-CC-CCCCCCC--CCCCceEeEEEEEEeecChhhhhhccCCCc
Q 015101 169 CEKMPS-TQ--LRNVKIKSLPCFEQEGMIWIWPGDEP-PT-ATIPCLL--PPSGFEIHAEIVMELPIEHGLLLDNLLDLA 241 (413)
Q Consensus 169 ~~~~P~-~~--~~~~~l~~~~v~~~~G~I~v~~~~~~-~~-~~~p~~~--~~~~~~~~~~~~~~~~~nwk~~~EN~~D~~ 241 (413)
|+.+|+ .. ....+|++|||++++|+||||+++++ +. ..+|++. +..++.+. ...++++||||+++||++|+|
T Consensus 81 ~~~~P~~~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D~~ 159 (349)
T 3gke_A 81 CVHNPHGNGARPASLNVRSFPVVERDALIWIWPGDPALADPGAIPDFGCRVDPAYRTV-GGYGHVDCNYKLLVDNLMDLG 159 (349)
T ss_dssp EEECCSTTCCCCGGGCCCBCCEEEETTEEEECCSCGGGCCGGGSCCCGGGGCTTSEEE-EEEEEESSCHHHHHHHHHCGG
T ss_pred ccccCccccccccccccceeeEEEECCEEEEeeCCCCCCcccccCCccccCCCCCEEE-eEEEEEecCHHhHHHhccccc
Confidence 999995 22 13578999999999999999998754 21 1245442 23567655 456789999999999999999
Q ss_pred ccCccCccccccCCC--CCceeeeec----------CCCCCCcccc------CCC----ccceecCCeEEEEEeeeeCCC
Q 015101 242 HAPFTHTSTFAKGWS--VPSLVKFLT----------PASGLQGYWD------PYP----IDMEFRPPCMVLSTIGISKPG 299 (413)
Q Consensus 242 H~~~~H~~t~~~~~~--~~~~~~~~~----------~~~~~~~~~~------~~~----~~~~f~~P~~~~~~~~~~~~g 299 (413)
|++++|+++++.... ++..++... ... ...+|. ... ..++|.+|+++...+++..+|
T Consensus 160 H~~~~H~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~P~~~~~~~~~~~~g 238 (349)
T 3gke_A 160 HAQYVHRANAQTDAFDRLEREVIVGDGEIQALMKIPGGT-PSVLMAKFLRGANTPVDAWNDIRWNKVSAMLNFIAVAPEG 238 (349)
T ss_dssp GHHHHTHHHHCCTTGGGCEEEEEECSSEEEEEEEEEEEC-CCHHHHHHTTTCCSCEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred cchhccchhhcCccccCCCCEEEEcCCEEEEEEEecCCC-CChHHHhhcccCCCCceeEEEEEEECCEEEEEEEecccCC
Confidence 999999999986532 122111100 000 001111 001 246788999987777776655
Q ss_pred CcCCCCcccccceeEEEEEeecCCCCcEEEEeeeecchhhhccCchhHHHHHHHHHhHHH-hhHHHHHHHHhhhccCCC-
Q 015101 300 KLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVL-NEDLRLVLGQQERMNNGA- 377 (413)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~V~-~ED~~ile~qq~~l~~~~- 377 (413)
.. ...+.++..+++|+|+++++||++|.+++||..++ +.+...+..+..+|| +||+.|||+||+++.+.+
T Consensus 239 ~p-----~~~~~~~~~~~~~tP~s~~~tr~~~~~~rn~~~~d---~~~~~~~~~~~~~if~~ED~~ile~Qq~~l~~~~~ 310 (349)
T 3gke_A 239 TP-----KEQSIHSRGTHILTPETEASCHYFFGSSRNFGIDD---PEMDGVLRSWQAQALVKEDKVVVEAIERRRAYVEA 310 (349)
T ss_dssp SC-----GGGSEEEEEEEEEEEEETTEEEEEEEEEESSSTTC---HHHHHHHHHHHHHHTTTHHHHHHHHHHHTHHHHHH
T ss_pred CC-----CCCceEEEEEEEEecCCCCeEEEEEEEEecCccCc---hhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhcCCc
Confidence 31 12234567789999999999999999999987543 233445566788898 999999999999987632
Q ss_pred -CccccccCCCHHHHHHHHHHHHH-HcCCCCC
Q 015101 378 -NVWNLPVGYDKLGVRYRLWRDAL-EKGAKQL 407 (413)
Q Consensus 378 -~~~~~~~~~D~~~v~yRrwl~~l-~~g~~~~ 407 (413)
...++++++|+++++||||++++ +++..++
T Consensus 311 ~~~~~~~~~~D~~~v~~Rr~l~~l~~~e~~~~ 342 (349)
T 3gke_A 311 NGIRPAMLSCDEAAVRVSREIEKLEQLEAARL 342 (349)
T ss_dssp TTCCCCCCGGGHHHHHHHHHHHHHHHHHHTC-
T ss_pred cccccccccccHHHHHHHHHHHHHHHHHHHhh
Confidence 22358999999999999999877 4444443
No 2
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=100.00 E-value=8.8e-46 Score=375.16 Aligned_cols=311 Identities=18% Similarity=0.180 Sum_probs=227.8
Q ss_pred ccccCCCCCCchhhhhhhccCCcccccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEE
Q 015101 54 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 132 (413)
Q Consensus 54 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~i~a 132 (413)
..++.+.|+|+++|+.|+++||+ +.|++||+++||+ +|++++++++|++|+|+|+.+|+++|
T Consensus 17 ~~lp~~~Y~d~~~~~~E~~~if~-----------------~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A 79 (409)
T 3n0q_A 17 HALDQAFYTDAEVFQTDLQEIFY-----------------KEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGADNVIRA 79 (409)
T ss_dssp BCCCHHHHHCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred ccCCHHHcCCHHHHHHHHHHHHh-----------------cCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEe
Confidence 45677789999999999999985 5699999999998 59999999999999999999999999
Q ss_pred EecCCCCCCCCCCC-CcccCCeEecCCCCeEEecCCCccccCCcc----cccccccccceeeeCCeEEEcCCCCCCCCCC
Q 015101 133 VQNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPTATI 207 (413)
Q Consensus 133 ~~n~CpHrg~~L~~-g~~~~~~l~CpyHgw~fd~~G~~~~~P~~~----~~~~~l~~~~v~~~~G~I~v~~~~~~~~~~~ 207 (413)
|.|+|||||++|+. |.++++.|+||||||+||.||+|+++|+.. ....+|++|||++++|+|||+++++++ ++
T Consensus 80 ~~n~C~Hrga~L~~~g~~~~~~i~CpyHgw~fd~dG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~Vfv~~~~~~~--~l 157 (409)
T 3n0q_A 80 FHNACRHRGSVICKAKKGNNPKLVCPYHQWTYELDGRLLWARDMGPDFEPSRHGLKTVHCRELAGLIYICLADEAP--DF 157 (409)
T ss_dssp EESCCTTTCCCSCCSSEEECSSEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEECSSSCC--CC
T ss_pred ecCcCCcCcCCccCcCccCCCEEEECCCCCEEeCCCCcccCCcCCcccCcccCCCceEEEEEECCEEEEEeCCCCC--Ch
Confidence 99999999999996 888889999999999999999999999753 246789999999999999999987654 34
Q ss_pred CCCCC----------CCCceEeEEEEEEeecChhhhhhccCCCcccCccCccccccCCCC--------------------
Q 015101 208 PCLLP----------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV-------------------- 257 (413)
Q Consensus 208 p~~~~----------~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~~H~~t~~~~~~~-------------------- 257 (413)
+++++ ...+.+.....++++||||+++||++|+||++++|+++++.-...
T Consensus 158 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (409)
T 3n0q_A 158 ERFAEVARPYLEVHDLSNAKVAHESSIVERGNWKLVWENNRECYHCGGNHPALCRTFPDDPSVTGIEGGETPSNLQAHFD 237 (409)
T ss_dssp HHHHHHHHHHHHTTCGGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCTTGGGTSCCCHHHHSCCCSCCCHHHHHHHH
T ss_pred HHhhhhhhhhhccccCCCeEEeeEEEEEEecchHhhhhhccccccccccCcchhhccccccccccccccccccchhhhhh
Confidence 44321 123455556678899999999999999999999999876531100
Q ss_pred -------Cc-ee-----ee---ecCCC------CCCc---c---ccC-----CCccceecCCeEEEEEeeeeCCCCcCCC
Q 015101 258 -------PS-LV-----KF---LTPAS------GLQG---Y---WDP-----YPIDMEFRPPCMVLSTIGISKPGKLEGQ 304 (413)
Q Consensus 258 -------~~-~~-----~~---~~~~~------~~~~---~---~~~-----~~~~~~f~~P~~~~~~~~~~~~g~~~~~ 304 (413)
+. .. .+ ..+.. ...+ + .+. ......+..||+++...
T Consensus 238 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~----------- 306 (409)
T 3n0q_A 238 RCEQAGMPSGFHLSGDGQFRVARMPLKEGAESYTMDGKTAVRRWLGRAAFADAGSLLKFHYPTTWNHFL----------- 306 (409)
T ss_dssp HHHHTTCCCCCEECTTSSEEEEEECCSTTCCSSSTTSSCSCSSCSSCCSSSCCCEEEEEETTTEEEEEC-----------
T ss_pred hhhccCCcceeecccccceeeeeecccccccccccCCccccccccCCCcccCCceEEEEECCeEEEEEC-----------
Confidence 00 00 00 00000 0000 0 000 00112345677665442
Q ss_pred CcccccceeEEEEEeecCCCCcEEEEeeeecchhhhccCchhHHHHHHHHHhHHHhhHHHHHHHHhhhccCCCCc-cccc
Q 015101 305 NTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANV-WNLP 383 (413)
Q Consensus 305 ~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~V~~ED~~ile~qq~~l~~~~~~-~~~~ 383 (413)
.+.+.++.+.|+++++|++.+.++.........--.+ ..+..+.+.|..||..|+|..|+++.++... ..++
T Consensus 307 ------pd~~~~~~~~P~~p~~t~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~ED~~l~e~~Q~G~~s~~y~~G~~s 379 (409)
T 3n0q_A 307 ------SDHSIVFRVTPISPTETEVTTKWLVHKDAVEGVDYDL-QRLTEVWIATNDEDREVVEFNQMGINSPAYEPGPYS 379 (409)
T ss_dssp ------SSCEEEEEEEEEETTEEEEEEEEEEETTCCBTTTBCH-HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCBCC
T ss_pred ------CCEEEEEEEEECCCCeEEEEEEEEEcCcccccchhhH-HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCC
Confidence 1245567789999999999988876432111000112 2334566889999999999999999987542 2244
Q ss_pred cCCCHHHHHHHHHHH-HHH
Q 015101 384 VGYDKLGVRYRLWRD-ALE 401 (413)
Q Consensus 384 ~~~D~~~v~yRrwl~-~l~ 401 (413)
...+.++..|.+|+. ++.
T Consensus 380 ~~~E~~v~~F~~w~~~~l~ 398 (409)
T 3n0q_A 380 PTQESGVLQFVEWYLSTLK 398 (409)
T ss_dssp TTTSHHHHHHHHHHHHHHH
T ss_pred CCccHhHHHHHHHHHHHHH
Confidence 446899999999955 444
No 3
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=100.00 E-value=1.9e-45 Score=373.08 Aligned_cols=310 Identities=17% Similarity=0.173 Sum_probs=226.1
Q ss_pred cccCCCCCCchhhhhhhccCCcccccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEE
Q 015101 55 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCV 133 (413)
Q Consensus 55 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~i~a~ 133 (413)
.++.+.|+|+++|+.|+++||+ +.|++||+++||+ +|++++++++|++|+|+|+.+|+++||
T Consensus 20 ~lp~~~Y~d~~~~~~E~~~if~-----------------~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~ 82 (412)
T 3vca_A 20 SLEQPFYTSPEVYALDLQHIFY-----------------KQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAF 82 (412)
T ss_dssp CCCHHHHHCHHHHHHHHHHTTT-----------------TSCEEEEEGGGGCSTTEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred cCCHHHcCCHHHHHHHHHHHHh-----------------ccCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEEe
Confidence 4567789999999999999985 5699999999998 699999999999999999999999999
Q ss_pred ecCCCCCCCCCC-CCcccCCeEecCCCCeEEecCCCccccCCcc----cccccccccceeeeCCeEEEcCCCCCCCCCCC
Q 015101 134 QNTCAHRACPLH-LGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIP 208 (413)
Q Consensus 134 ~n~CpHrg~~L~-~g~~~~~~l~CpyHgw~fd~~G~~~~~P~~~----~~~~~l~~~~v~~~~G~I~v~~~~~~~~~~~p 208 (413)
.|+|||||++|+ .|.++++.|+||||||+||.||+|+.+|+.. ..+.+|++|||++++|+|||+++++++ +++
T Consensus 83 ~n~CpHrga~L~~~g~~~~~~i~CPyHgw~fdldG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p--~l~ 160 (412)
T 3vca_A 83 HNSCRHRGSLICKARQGQVAKLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPVNLRNLDGLIYICLSDTPP--DFQ 160 (412)
T ss_dssp ESSCTTTCCCSCCSSEEECSSEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEECSSSCC--CCH
T ss_pred cccCCCCCCEeecccccCCCEEEcCCCCCEEcCCCccccCCccccccCcccCCCcEEEEEEECCEEEEEecCCCC--CHH
Confidence 999999999998 6888889999999999999999999999753 235789999999999999999987654 344
Q ss_pred CCCC----------CCCceEeEEEEEEeecChhhhhhccCCCcccCccCccccccCCCC---------------------
Q 015101 209 CLLP----------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV--------------------- 257 (413)
Q Consensus 209 ~~~~----------~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~~H~~t~~~~~~~--------------------- 257 (413)
++++ ...+.+.....++++||||+++||++|+||++++|+++++.-...
T Consensus 161 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (412)
T 3vca_A 161 TFAQLARPYLEVHDLKDAKVAFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRSFPLDPEVAGVQADGGVSKKLQAHFD 240 (412)
T ss_dssp HHHHHHHHHHHTTCGGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCHHHHTTSCCCHHHHCC----CCCHHHHHHHH
T ss_pred HHhhhhHHhhccccCCCeEEeEEEEEEEccCchhhHhhccccccCcccCcchhhcccccccccccccccccccchhhhhh
Confidence 4331 123455556678899999999999999999999999775421100
Q ss_pred -------Ccee------ee---ecCCC-C-----CCc---c---ccC-----CCccceecCCeEEEEEeeeeCCCCcCCC
Q 015101 258 -------PSLV------KF---LTPAS-G-----LQG---Y---WDP-----YPIDMEFRPPCMVLSTIGISKPGKLEGQ 304 (413)
Q Consensus 258 -------~~~~------~~---~~~~~-~-----~~~---~---~~~-----~~~~~~f~~P~~~~~~~~~~~~g~~~~~ 304 (413)
+... .+ ..+.. + ..+ . .+. ......+..||+++...
T Consensus 241 ~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~----------- 309 (412)
T 3vca_A 241 RCEAAGTPAQFVLAGDGQYRLARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPSTWNHFL----------- 309 (412)
T ss_dssp HHHHTTCCCSCEECTTSSEEEEEECCSTTCCSSSSSSSCSCSSCSSCCCSTTCCEEEEEETTTEEEEEC-----------
T ss_pred hhhccCCcccccccccCceeeeeecccccccccccCccccccccccCCcccCCceEEEEECCeEEEEEC-----------
Confidence 0000 00 00000 0 000 0 000 00112355777765442
Q ss_pred CcccccceeEEEEEeecCCCCcEEEEeeeecchhhhccCchhHHHHHHHHHhHHHhhHHHHHHHHhhhccCCCCc-cccc
Q 015101 305 NTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANV-WNLP 383 (413)
Q Consensus 305 ~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~V~~ED~~ile~qq~~l~~~~~~-~~~~ 383 (413)
.+.+.++.+.|+++++|++.+.+++........-..+ ..+..+.+.|..||+.|+|..|+++.++... ..++
T Consensus 310 ------pd~~~~~~~~P~~~~~t~v~~~~~~~~d~~~~~d~~~-~~~~~~~~~~~~ED~~l~e~~Q~G~~S~~y~~G~~s 382 (412)
T 3vca_A 310 ------PDHSLTFRVMPISPTETEVTTTWLVHKDAVEGVDYDL-KRLTEVWIATNDEDREIVETNQQGILSPAYVPGPYS 382 (412)
T ss_dssp ------SSCEEEEEEEEEETTEEEEEEEEEEETTCCBTTTBCH-HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCBCC
T ss_pred ------CCEEEEEEEEECCCCeEEEEEEEEEccccccCccHHH-HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCC
Confidence 1245567789999999999988776432111000112 2334566889999999999999999987542 2344
Q ss_pred cCCCHHHHHHHHHHH-HHH
Q 015101 384 VGYDKLGVRYRLWRD-ALE 401 (413)
Q Consensus 384 ~~~D~~~v~yRrwl~-~l~ 401 (413)
...+.++..|.+|+. ++.
T Consensus 383 p~~E~~v~~F~~w~~~~l~ 401 (412)
T 3vca_A 383 PGQESGVMQFVDWYAASLE 401 (412)
T ss_dssp TTTCHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHH
Confidence 445899999999965 443
No 4
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=100.00 E-value=1.3e-44 Score=371.53 Aligned_cols=308 Identities=17% Similarity=0.264 Sum_probs=215.2
Q ss_pred CCchhhh--hhhccCCcccccccCCCCCccccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCC
Q 015101 62 TSKQSLD--IVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAH 139 (413)
Q Consensus 62 ~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpH 139 (413)
+|+++|+ .|++.+|+ +.|++||++++|++|++++++++|++|+|+| .+|+++|+.|+|||
T Consensus 25 ~~~~~~~~~~e~~~if~-----------------~~W~~v~~~~el~~g~~~~~~~~g~~vvl~r-~~G~v~a~~n~CpH 86 (446)
T 1z01_A 25 KTQSQYQPYKDAAWGFI-----------------NHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALKDQCLH 86 (446)
T ss_dssp HHHGGGHHHHHCTTCBC-----------------SEEEEEEEGGGSCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTT
T ss_pred cCHHHhhhhhhhhhhhh-----------------hceEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCEEEEEeCcCCC
Confidence 8999999 89888874 6799999999999899999999999999999 79999999999999
Q ss_pred CCCCCCCCc--ccCCeEecCCCCeEEec-CCCccccCCccc----ccccccccceeeeCCeEEEcCCCCC----CCCCCC
Q 015101 140 RACPLHLGS--VNEGRIQCPYHGWEYST-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEP----PTATIP 208 (413)
Q Consensus 140 rg~~L~~g~--~~~~~l~CpyHgw~fd~-~G~~~~~P~~~~----~~~~l~~~~v~~~~G~I~v~~~~~~----~~~~~p 208 (413)
||++|+.|. ++++.|+||||||+||+ +|+|+.+|+.+. ...+|++|||.+++|+|||+++++. ...+++
T Consensus 87 rga~L~~g~~~~~~~~i~CpyHgw~fd~~~G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~p~~~~~~l~ 166 (446)
T 1z01_A 87 RGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYPVHEVNGMIFVFVREDDFPDEDVPPLA 166 (446)
T ss_dssp TCCCGGGSCCCSSTTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCEECEEEETTEEEEEECCTTCCGGGCCCGG
T ss_pred CcCCCCCCccCCCCCEEEeCCCCeEEeCCCCCccccCCCccccCcccCCCcEEEEEEECCEEEEEeCCccccccCCCChh
Confidence 999999996 46789999999999997 999999976431 2578999999999999999997642 111222
Q ss_pred CCCC----------------------CCCceEeEEEEEEeecChhhhhhccCCCcccCccCccccccC---CCCCce---
Q 015101 209 CLLP----------------------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKG---WSVPSL--- 260 (413)
Q Consensus 209 ~~~~----------------------~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~~H~~t~~~~---~~~~~~--- 260 (413)
+.++ ..++.+. ....+++||||+++||++|+||+ ++|+++++.. ...+..
T Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D~~H~-~vH~~~~~~~~~~~~~~~~~~~ 244 (446)
T 1z01_A 167 HDLPFRFPERSEQFPHPLWPSSPSVLDDNAVVH-GMHRTGFGNWRIACENGFDNAHI-LVHKDNTIVHAMDWVLPLGLLP 244 (446)
T ss_dssp GGSCCCTTTTTTTSCCTTSCCCCCTTSTTEEEE-EEEEEEESCHHHHHTTTTCTTGG-GGGTTCHHHHHTTCCCCSEEEE
T ss_pred HhccchhhhhhhccccccccccccccCCCeEEE-eEEEEEcCCHHHHHHhccchhhh-hhhhhhhhcccccccccccccc
Confidence 1111 1345543 34568999999999999999999 9999887531 111100
Q ss_pred -----eeeecCCCCCCcc------------cc--------C----CCccceecCCeEEEEEeeeeCCCCcCCCCcccccc
Q 015101 261 -----VKFLTPASGLQGY------------WD--------P----YPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCAT 311 (413)
Q Consensus 261 -----~~~~~~~~~~~~~------------~~--------~----~~~~~~f~~P~~~~~~~~~~~~g~~~~~~~~~~~~ 311 (413)
...+....+..+. +. . ....+.+.+|++++... .|. .
T Consensus 245 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~P~~~~~~~---~p~-----------~ 310 (446)
T 1z01_A 245 TSDDCIAVVEDDDGPKGMMQWLFTDKWAPVLENQELGLKVEGLKGRHYRTSVVLPGVLMVEN---WPE-----------E 310 (446)
T ss_dssp CSTTSEEEECCSSSCCEEEECTTSTTEEEECEETTTTEECCCCCCCCCEEEEETTTEEEEET---CSS-----------T
T ss_pred cCCCceeEEEecCCCCEEEEEecCccccchhhhhhhccccccCCceEEEeeeecCceEEEec---cCC-----------C
Confidence 0011000000010 00 0 00122344666654321 110 1
Q ss_pred eeEEEEEeecCCCCcEEEEeeeecchhhhccCchhHHHHH----HHH-HhHHHhhHHHHHHHHhhhccCCCC-ccccccC
Q 015101 312 HLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLW----RHF-AEQVLNEDLRLVLGQQERMNNGAN-VWNLPVG 385 (413)
Q Consensus 312 ~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p~~~~~~----~~~-~~~V~~ED~~ile~qq~~l~~~~~-~~~~~~~ 385 (413)
.+.+++.++|+++++|++++.+++++... .....+...+ ... ...|..||+.|+|+||+++..+.. ..++++.
T Consensus 311 ~~~~~~~~~Pi~~~~t~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~ED~~i~e~~q~~~~~~~~~~~~~l~~ 389 (446)
T 1z01_A 311 HVVQYEWYVPITDDTHEYWEILVRVCPTD-EDRKKFQYRYDHMYKPLCLHGFNDSDLYAREAMQNFYYDGTGWDDEQLVA 389 (446)
T ss_dssp TCEEEEEEEESSSSEEEEEEEEEEECCSH-HHHHHHHHHHHTTHHHHTTTTHHHHHHHHHHHHHHHHHTSHHHHHCCCCG
T ss_pred CeEEEEEEEECCCCcEEEEEEEecCCCCH-HHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHhccccccccccCch
Confidence 23557788999999999988777654311 1111011111 111 234679999999999999877543 3468889
Q ss_pred CCHHHHHHHHHHHHHHcCC
Q 015101 386 YDKLGVRYRLWRDALEKGA 404 (413)
Q Consensus 386 ~D~~~v~yRrwl~~l~~g~ 404 (413)
+|+++++||||++++..+.
T Consensus 390 ~D~~i~~~Rr~l~~~~~~~ 408 (446)
T 1z01_A 390 TDISPITWRKLASRWNRGI 408 (446)
T ss_dssp GGHHHHHHHHHHHHHCSCB
T ss_pred hhHHHHHHHHHHHHHHhhc
Confidence 9999999999999886554
No 5
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.5e-44 Score=364.61 Aligned_cols=300 Identities=16% Similarity=0.281 Sum_probs=211.8
Q ss_pred cccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEecCCC
Q 015101 89 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 168 (413)
Q Consensus 89 ~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~~G~ 168 (413)
...+.+.|++||++++|++|++++++++|++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+
T Consensus 19 ~~~f~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~~~G~v~a~~n~CpHrga~L~~g~~~~~~i~CpyHgw~f~~~G~ 98 (386)
T 2zyl_A 19 PTRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTVKGDEVACPFHDWRWGGDGR 98 (386)
T ss_dssp CSSCCSEEEEEEEGGGGCSSSCEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBGGGSEEETTEEECTTTCCEEETTSB
T ss_pred chhhhcceEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCCCCcccCCEEEeCCCCCEECCCCC
Confidence 34567789999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred ccccCCccc--ccccccccceeeeCCeEEEcCCCCC-CC---CCCCCCCC--CCCceEeEEEEEEee-cChhhhhhccCC
Q 015101 169 CEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDEP-PT---ATIPCLLP--PSGFEIHAEIVMELP-IEHGLLLDNLLD 239 (413)
Q Consensus 169 ~~~~P~~~~--~~~~l~~~~v~~~~G~I~v~~~~~~-~~---~~~p~~~~--~~~~~~~~~~~~~~~-~nwk~~~EN~~D 239 (413)
|+.+|+... ...++++|||++++|+||||++++. ++ ..+|++.. ..++.......++++ ||||+++||++|
T Consensus 99 ~~~~P~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D 178 (386)
T 2zyl_A 99 CKLVPYARRTPRMARTRSWTTDVRSGLLFVWHDHEGNPPDPAVRIPEIPEAASDEWTDWRWNRILIEGSNCRDIIDNVTD 178 (386)
T ss_dssp EEECTTCSSCCTTCBCCEECEEEETTEEEEEECTTCCCCCGGGCCCCCGGGGCTTBCCCEEEEEEEESSCGGGGGGGGGC
T ss_pred ccccCcccccCcccCcceEeEEEECCEEEEEECCccCCCcccccCcccccccCCCceEEEEEEEEEcCcCHHhHhhhccc
Confidence 999998642 2468999999999999999997542 11 12343321 234544445567889 999999999999
Q ss_pred CcccCccCccccccC---CCCCceeeee--cCCCCCC--c-cccC--CCccceecCCeEEEEEeeeeCCCCcCCCCcccc
Q 015101 240 LAHAPFTHTSTFAKG---WSVPSLVKFL--TPASGLQ--G-YWDP--YPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQC 309 (413)
Q Consensus 240 ~~H~~~~H~~t~~~~---~~~~~~~~~~--~~~~~~~--~-~~~~--~~~~~~f~~P~~~~~~~~~~~~g~~~~~~~~~~ 309 (413)
+||++++|+++.... .......... .+..... + .++. ......|..|++++..+....++.
T Consensus 179 ~~H~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~~g~--------- 249 (386)
T 2zyl_A 179 MAHFFYIHFGLPTYFKNVFEGHIASQYLHNVGRPDVDDLGTSYGEAHLDSEASYFGPSFMINWLHNRYGNY--------- 249 (386)
T ss_dssp STHHHHTTCEEEEEEEEEEETTEEEEEEEEEECTTSSSCCSSSCCEEEEEEEEEESSSEEEEEEEEEETTE---------
T ss_pred ccchhhhCcCccccccccccCceeEEEecCCCCCchhhcccccCcceeeEEEEEECCeEEEEEeeeccCCc---------
Confidence 999999999753210 0000000110 0000000 0 0000 011245667887765554333321
Q ss_pred cceeEEEEEeecCCCCcEEEEeeeecchhhhcc--CchhHHHHHHHHHhHHHhhHHHHHHHHhhhccCCCCccccccCCC
Q 015101 310 ATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLK--HVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYD 387 (413)
Q Consensus 310 ~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~V~~ED~~ile~qq~~l~~~~~~~~~~~~~D 387 (413)
......++.++|+++++|++++.+++++.+... ....+...+..+..+++.||+.|+|+||+... .++...|
T Consensus 250 ~~~~~~~~~~~Pv~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vf~ED~~I~e~q~~~~~------p~~~~~D 323 (386)
T 2zyl_A 250 KSESILINCHYPVTQNSFVLQWGVIVEKPKGMSEEMTDKLSRVFTEGVSKGFLQDVEIWKHKTRIDN------PLLVEED 323 (386)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEBCCCCCC--CTHHHHHHHHHHHHHHHHHHHHHHTTCCCCSS------CCCCGGG
T ss_pred ceeEEEEEEEEEccCCEEEEEEEEEEecCCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHhcccccC------CccCccc
Confidence 012345667799999999999988765532111 11122233345678899999999999875422 2567889
Q ss_pred HHHHHHHHHHHHHHcC
Q 015101 388 KLGVRYRLWRDALEKG 403 (413)
Q Consensus 388 ~~~v~yRrwl~~l~~g 403 (413)
+++++||+|++++-..
T Consensus 324 ~~~~~fRrw~~~~~~~ 339 (386)
T 2zyl_A 324 GAVYQLRRWYEQFYVD 339 (386)
T ss_dssp CSHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHhCCc
Confidence 9999999999876443
No 6
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=100.00 E-value=2.8e-44 Score=363.62 Aligned_cols=298 Identities=19% Similarity=0.314 Sum_probs=205.4
Q ss_pred cccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcc--cCCeEecCCCCeEEec-
Q 015101 89 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV--NEGRIQCPYHGWEYST- 165 (413)
Q Consensus 89 ~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~--~~~~l~CpyHgw~fd~- 165 (413)
...+.+.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|.+ +++.|+||||||+||.
T Consensus 22 ~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R-~~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~f~~~ 100 (392)
T 2de6_A 22 KLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNR-IDGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWE 100 (392)
T ss_dssp TTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEETT
T ss_pred hhhhccccEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCEEEEEeCcCCCCCCCCcCCcccCCCCEEEeCCCCCEEcCC
Confidence 345678899999999999999999999999999999 499999999999999999999874 4689999999999997
Q ss_pred CCCccccCCccc----ccccccccceeeeCCeEEEcCCCCCCCCCCCCCC----CCCCceEeEEEEEEeecChhhhhhcc
Q 015101 166 DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLL----PPSGFEIHAEIVMELPIEHGLLLDNL 237 (413)
Q Consensus 166 ~G~~~~~P~~~~----~~~~l~~~~v~~~~G~I~v~~~~~~~~~~~p~~~----~~~~~~~~~~~~~~~~~nwk~~~EN~ 237 (413)
+|+|+.+|+.+. ...+|++|||++++|+|||++++++++ ++++.+ ...++.+. ....+++||||+++||+
T Consensus 101 ~G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~-~l~~~l~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~ 178 (392)
T 2de6_A 101 DGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPP-PLARDTPPNFLDDDMEIL-GKNQIIKSNWRLAVENG 178 (392)
T ss_dssp TCBEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSSCC-CGGGGSCTTTTCTTEEEE-EEEEEESSCHHHHHHHH
T ss_pred CCccccccCCccccccccCCCceEeEEEECCEEEEEeCCCCCC-ChhHhccccccCCCeEEE-EEEEEEecChHhhhHhc
Confidence 999999976432 357899999999999999999764322 233211 12456654 34678999999999999
Q ss_pred CCCcccCccCccccccCCC---CCc---------eeeeecCCCC--CCcc---ccC------------------------
Q 015101 238 LDLAHAPFTHTSTFAKGWS---VPS---------LVKFLTPASG--LQGY---WDP------------------------ 276 (413)
Q Consensus 238 ~D~~H~~~~H~~t~~~~~~---~~~---------~~~~~~~~~~--~~~~---~~~------------------------ 276 (413)
+|+||+ ++|.++++.... .+. .......... ..++ +..
T Consensus 179 ~D~~H~-~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~ 257 (392)
T 2de6_A 179 FDPSHI-YIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDLIGEHGVPVFEGTIGGEVVREGAYGEKI 257 (392)
T ss_dssp HCGGGG-GGGTTCHHHHHTTBEECSEEECCSCGGGGEEEECCCTTCCCEEEECGGGTCEEECEEEETTEEEEECEECSBC
T ss_pred chhhhh-hhhcchhccccccccccccccccccccceEEeccCCccCCcceeeecCCccccccccccccceeeccccCCcc
Confidence 999999 999988653110 000 0000000000 0010 000
Q ss_pred CCccceecCCeEEEEEeeeeCCCCcCCCCcccccceeEEEEEeecCCCCcEEEEeeeecchhhhccCch-hHHH---HHH
Q 015101 277 YPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVP-FMQY---LWR 352 (413)
Q Consensus 277 ~~~~~~f~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p-~~~~---~~~ 352 (413)
......+..|+.+... ..|. ..+.++..++|+++++|++++.+++++... .... +... .+.
T Consensus 258 ~~~~~~~~~P~~~~~~---~~p~-----------~~~~~~~~~~Pi~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 322 (392)
T 2de6_A 258 VANDISIWLPGVLKVN---PFPN-----------PDMMQFEWYVPIDENTHYYFQTLGKPCAND-EERKKYEQEFESKWK 322 (392)
T ss_dssp CCCEEEEETTTEEEEE---SCSS-----------TTCEEEEEEEEEETTEEEEEEEEEEECSSH-HHHHHHHHHHHHTHH
T ss_pred cceeEEEecccceecc---ccCC-----------CCEEEEEEEeecCCCcEEEEEEEecCCCCH-HHHHHHHHHHHHHHH
Confidence 0111223345443211 0111 123456778999999999988777655321 1111 1111 111
Q ss_pred H-HHhHHHhhHHHHHHHHhhhccCCCC-ccccccCCCHHHHHHHHHHHHHHcCCC
Q 015101 353 H-FAEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKGAK 405 (413)
Q Consensus 353 ~-~~~~V~~ED~~ile~qq~~l~~~~~-~~~~~~~~D~~~v~yRrwl~~l~~g~~ 405 (413)
. ....|+.||+.|+|+||+.+..+.. ..+++.++|+++++||||++++..+..
T Consensus 323 ~~~~~~~~~qD~~i~e~qq~~~~~~~~~~~e~~~~~D~~~~~~Rr~l~~~~~~~~ 377 (392)
T 2de6_A 323 PMALEGFNNDDIWAREAMVDFYADDKGWVNEILFESDEAIVAWRKLASEHNQGIQ 377 (392)
T ss_dssp HHTTTTTTHHHHHHHHHTHHHHHTSTHHHHCCCCGGGHHHHHHHHHHHHHCSCBC
T ss_pred HhhccCCChhhHHHHHhhhhhhhccccCccceecchhHHHHHHHHHHHHHhhhhc
Confidence 1 1234688999999999998876543 456888999999999999999876653
No 7
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=100.00 E-value=2.6e-40 Score=329.83 Aligned_cols=301 Identities=20% Similarity=0.326 Sum_probs=211.2
Q ss_pred cccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCc--ccCCeEecCCCCeEEec-
Q 015101 89 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST- 165 (413)
Q Consensus 89 ~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~--~~~~~l~CpyHgw~fd~- 165 (413)
...+++.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|. ++++.|+||||||+||+
T Consensus 28 ~~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fdl~ 106 (394)
T 3gcf_A 28 TLGFDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTR-AKGEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTYDLD 106 (394)
T ss_dssp TTCEESEEEEEEEGGGCCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGSCBCSSTTEEECTTTCEEEETT
T ss_pred hhhhcccCEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeeCcCCCCCCCCcCCcccCcCCEEECCCCCcEEECC
Confidence 345678899999999999999999999999999999 79999999999999999999986 46789999999999998
Q ss_pred CCCccccCCccc----ccccccccceeeeCCeEEEcCCCCCCCCCCCCCCC----CCCceEeEEEEEEeecChhhhhhcc
Q 015101 166 DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP----PSGFEIHAEIVMELPIEHGLLLDNL 237 (413)
Q Consensus 166 ~G~~~~~P~~~~----~~~~l~~~~v~~~~G~I~v~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~nwk~~~EN~ 237 (413)
+|+|+.+|+.+. ...+|++|||++++|+|||+++++++ +++++.++ ..++.+.+ ...+++||||+++||+
T Consensus 107 dG~cv~iP~~p~~~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-ppL~e~L~~~~~d~~~~~~~-~~~~i~~NWK~~~EN~ 184 (394)
T 3gcf_A 107 DGRLVDVLTSPGSPVIGKIGIKVYPVQVAQGVVFVFIGDEEP-HALSEDLPPGFLDEDTHLLG-IRRTVQSNWRLGVENG 184 (394)
T ss_dssp TCBEEEETTSTTCTTTTSCBCCEECEEEETTEEEEEESSSCC-CCGGGGSCTTTTCTTEEEEE-EEEEESSCHHHHHHHH
T ss_pred CCceeccCCCcccccccccCceEEEEEEECCcEEEecCCCCC-CCchhhcchhhcCCceEEEe-EEEEEecCchhhHhhc
Confidence 899999987532 35789999999999999999976432 23333222 24555443 4678999999999999
Q ss_pred CCCcccCccCccccccC---CCCCcee--------eeecCCCCCCccccC-----------------------------C
Q 015101 238 LDLAHAPFTHTSTFAKG---WSVPSLV--------KFLTPASGLQGYWDP-----------------------------Y 277 (413)
Q Consensus 238 ~D~~H~~~~H~~t~~~~---~~~~~~~--------~~~~~~~~~~~~~~~-----------------------------~ 277 (413)
+|+||+ ++|.++++.. ...+..+ ... +.....|.++. .
T Consensus 185 lD~yH~-~vH~~ti~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kg~~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~ 262 (394)
T 3gcf_A 185 FDTTHI-FMHRNSPWVSGNRLAFPYGFVPADRDAMQVY-DENWPKGVLDRLSENYMPVFEATLDGETVLSAELTGEEKKV 262 (394)
T ss_dssp SCSSGG-GGGTTCHHHHHTTBCCCSEEEECSTTSEEEE-CSSSSCEEEECHHHHEEEECEEEETTEEEEECCCCSSCBCC
T ss_pred cccchh-hCchhhhcccccccccCcceeEcCCceEEec-cCCCCcchhhhhhccccccccccccccccccccccCccccc
Confidence 999999 9999988642 1111110 011 11122221111 0
Q ss_pred CccceecCCeEEEEEeeeeCCCCcCCCCcccccceeEEEEEeecCCCCcEEEEeeeecchhhhccCchh---HHHHHHHH
Q 015101 278 PIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPF---MQYLWRHF 354 (413)
Q Consensus 278 ~~~~~f~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p~---~~~~~~~~ 354 (413)
+....+..|++.... .+.. .+++++...+|+++++++++-.+............+ ++..|...
T Consensus 263 ~~~~s~~lP~v~~v~-~~p~-------------~~~~~~~~~vPid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (394)
T 3gcf_A 263 AAQVSVWLPGVLKVD-PFPD-------------PTLIQYEFYVPISETQHEYFQVLQRKVEGPEDVKTFEVEFEERWRDD 328 (394)
T ss_dssp CSEEEEETTTEEEEE-SCSS-------------TTCEEEEEEEESSSSCEEEEEEEEEECSSHHHHHHHHHHHHHTHHHH
T ss_pred ceeEEEEecCeeEec-cCCC-------------CCeEEEEEEeeccCCeEEEEEEEEEECCCHHHHHHHHHHHHHHhHHH
Confidence 112334445444322 1111 146677778999999999997776544322111111 11122211
Q ss_pred -HhHHHhhHHHHHHHHhhhccCCCC-ccccccCCCHHHHHHHHHHHHHHcCCCCCC
Q 015101 355 -AEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKGAKQLP 408 (413)
Q Consensus 355 -~~~V~~ED~~ile~qq~~l~~~~~-~~~~~~~~D~~~v~yRrwl~~l~~g~~~~p 408 (413)
...+.+.|...-|+.|.=...+.. ..|.....|..+|.+||...+..+|...-|
T Consensus 329 ~~~~f~~~d~~ar~~~~~~y~~~~g~~~e~l~~~d~~~~~~r~~~~~~~~~~~~~~ 384 (394)
T 3gcf_A 329 ALHGFNDDDVWAREAQQEFYGERDGWSKEQLFPPDMCIVKWRTLASERGRGVRAAR 384 (394)
T ss_dssp TTTTTTHHHHHHHHHHHHHHHHSCHHHHCCCCGGGHHHHHHHHHHHHHCSEECC--
T ss_pred hhcccchhhHHHHHHHHHhhcccCCCChhhccCcchhHHHHHHHHHHhcccCCCCC
Confidence 356788999999999987665321 235778999999999999999988876544
No 8
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=100.00 E-value=4.4e-40 Score=327.36 Aligned_cols=299 Identities=19% Similarity=0.368 Sum_probs=212.3
Q ss_pred ccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCc--ccCCeEecCCCCeEEec-C
Q 015101 90 TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-D 166 (413)
Q Consensus 90 ~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~--~~~~~l~CpyHgw~fd~-~ 166 (413)
..+++.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|. ++++.|+||||||+||. +
T Consensus 26 ~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fdl~d 104 (389)
T 3gkq_A 26 LGFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNR-VDGVVHAIADRCLHRGVTLSDKVECYSKATISCWYHGWTYRWDN 104 (389)
T ss_dssp TCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGGCCCSBTTEEECTTTCEEEETTT
T ss_pred hhhcCccEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeCCcCCCCCCCccCCcccCcCCEEECCCCCCEEECCC
Confidence 34568899999999999999999999999999999 79999999999999999999986 46789999999999997 8
Q ss_pred CCccccCCccc----ccccccccceeeeCCeEEEcCCCCCCCCCCCCCCC----CCCceEeEEEEEEeecChhhhhhccC
Q 015101 167 GKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP----PSGFEIHAEIVMELPIEHGLLLDNLL 238 (413)
Q Consensus 167 G~~~~~P~~~~----~~~~l~~~~v~~~~G~I~v~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~nwk~~~EN~~ 238 (413)
|+|+.+|+.+. ...+|++|||++++|+|||+++++++ +++++.++ ..++.+.+ ..++++||||+++||++
T Consensus 105 G~cv~iP~~P~~~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-ppL~e~l~~~~~~~~~~~~~-~~~~i~~NWK~~~EN~l 182 (389)
T 3gkq_A 105 GKLVDILTNPTSVQIGRHALKTYPVREEKGLVFLFVGDQEP-HDLAEDVPPGFLDADLAVHG-QHRVVDANWRMGVENGF 182 (389)
T ss_dssp CBEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSCC-CCGGGGSCTTTTCTTEEEEE-EEEEESSCHHHHHHHHT
T ss_pred CCeecccCCcccccccccCCcEEEEEEECCeEEEecCCCCC-CCchhhcchhccCCceEEEe-EEEEEecCchhhHHhcc
Confidence 99999987532 35789999999999999999976432 23433222 24565544 46789999999999999
Q ss_pred CCcccCccCccccccC---CCCCc---------eeeeecCCCCCCccccCC---------------------------Cc
Q 015101 239 DLAHAPFTHTSTFAKG---WSVPS---------LVKFLTPASGLQGYWDPY---------------------------PI 279 (413)
Q Consensus 239 D~~H~~~~H~~t~~~~---~~~~~---------~~~~~~~~~~~~~~~~~~---------------------------~~ 279 (413)
|+||+ ++|+++++.. ...+. ..........+.|.++.+ ..
T Consensus 183 D~yH~-~vH~~si~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (389)
T 3gkq_A 183 DAGHV-FIHKSSILLDGNDIALPLGFAPGDPEQLTRSVTGEGAPKGVFDLLGEHSVPIFEATIEGQPAIQGHMGSKMVAI 261 (389)
T ss_dssp CSGGG-GGGTTCHHHHHTTBCBCSEEEECCGGGSEEEECCTTSCCEEEECSGGGEEEESEEEETTEEEEECBCCSBCCCC
T ss_pred hhchh-hCccccccccccccccccccccCCCcceEEEEcCCCCCccHHhhhhccccccccccccCcccccCCCCCcccce
Confidence 99999 9999987631 11111 111222223344433211 11
Q ss_pred cceecCCeEEEEEeeeeCCCCcCCCCcccccceeEEEEEeecCCCCcEEEEeeeecchhhhccCchh---HHHHHHHH-H
Q 015101 280 DMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPF---MQYLWRHF-A 355 (413)
Q Consensus 280 ~~~f~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p~---~~~~~~~~-~ 355 (413)
...+..|++.... .+.. .+++++...+|+++++++++-.+...+........+ ++..|... .
T Consensus 262 ~~s~~lP~v~~v~-~~~~-------------~~~~~~~~~vpi~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (389)
T 3gkq_A 262 SISVWLPGVLKVD-PFPD-------------PTLTQFEWYVPIDEGHHLYLQMLGRRVGSEEEARSFEAEFREKWVELAL 327 (389)
T ss_dssp EEEEETTTEEEEE-SCSS-------------TTCEEEEEEEEEETTEEEEEEEEEEECSSHHHHHHHHHHHHHTHHHHTT
T ss_pred eEEEEecCeeEec-cCCC-------------CCeEEEEEEeeccCCeEEEEEEEEEEcCCHHHHHHHHHHHHHHHHHHhh
Confidence 2334455544322 1111 246777778999999999997776544322111111 11222221 3
Q ss_pred hHHHhhHHHHHHHHhhhccCCCC-ccccccCCCHHHHHHHHHHHHHHcCCCC
Q 015101 356 EQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKGAKQ 406 (413)
Q Consensus 356 ~~V~~ED~~ile~qq~~l~~~~~-~~~~~~~~D~~~v~yRrwl~~l~~g~~~ 406 (413)
..+.+.|...-|+.|+=...+.. ..|.....|..+|+.||...+..+|...
T Consensus 328 ~~f~~~d~~ar~~~~~~y~~~~g~~~e~l~~~d~~~~~wr~~~~~~~~~~~~ 379 (389)
T 3gkq_A 328 NGFNDDDILARRSMEPFYADDRGWREEVLFESDRAIIEWRRLASQYNRGIQT 379 (389)
T ss_dssp TTTTHHHHHHHHHHHHHHHTSHHHHHCCCCGGGHHHHHHHHHHHHHCSCBCC
T ss_pred ccccchhHHHHHHHHHhhccCCCCChhhccCcchhHHHHHHHHHHhccccCC
Confidence 56788999999999987766421 2357789999999999999988877654
No 9
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=100.00 E-value=8.2e-40 Score=336.81 Aligned_cols=180 Identities=18% Similarity=0.302 Sum_probs=154.3
Q ss_pred ccccCCCCCCchhhhhhhccCCcccccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEE
Q 015101 54 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 132 (413)
Q Consensus 54 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~i~a 132 (413)
..++.+.|||+++|+.|++++|. +.|++||+++||+ +|+++++.++|.+|+|+|+.+|+++|
T Consensus 13 ~~~~~~~y~~~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a 75 (454)
T 2gbw_A 13 ASQSRQVFWDEDVYALEIERIFS-----------------RAWLMLGHESLVPKPGDFITTYMAEDKVILSHQSDGTFRA 75 (454)
T ss_dssp TEEEGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CccCHHHcCCHHHHHHHHHHHhh-----------------cCcEEEeEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEE
Confidence 35778899999999999999985 4699999999998 69999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCcc-cCCeEecCCCCeEEecCCCccccCCccc--------ccccccccceeeeCCeEEEcCCCCCC
Q 015101 133 VQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSLPCFEQEGMIWIWPGDEPP 203 (413)
Q Consensus 133 ~~n~CpHrg~~L~~g~~-~~~~l~CpyHgw~fd~~G~~~~~P~~~~--------~~~~l~~~~v~~~~G~I~v~~~~~~~ 203 (413)
|.|+|||||++|+.|.. +++.|+||||||+||.||+|+.+|+... ...+|++|+|++++|+|||++++++|
T Consensus 76 ~~n~CpHrga~L~~g~~g~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~p 155 (454)
T 2gbw_A 76 FINSCSHRGNQICHADSGNAKAFVCNYHGWVFGQDGSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDPEAP 155 (454)
T ss_dssp EESSCTTTCCCSCCCSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGCCCCEEEEEEETTEEEEECCTTCC
T ss_pred EeccCCCCCCCCcccccCCcCEEEeCCCCCEecCCCCcccCCcccccccccCCHhhCCCeeEEEEEECCEEEEEeCCCCC
Confidence 99999999999998764 6789999999999999999999997531 24679999999999999999987654
Q ss_pred CCCCCCCCC-------------CCCceEe-EEEEEEeecChhhhhhcc-CCCcccCccCccccc
Q 015101 204 TATIPCLLP-------------PSGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFA 252 (413)
Q Consensus 204 ~~~~p~~~~-------------~~~~~~~-~~~~~~~~~nwk~~~EN~-~D~~H~~~~H~~t~~ 252 (413)
+++++++ +.++.+. ....++++||||+++||+ +|+||++++|..+++
T Consensus 156 --~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~H~~~~~ 217 (454)
T 2gbw_A 156 --SLEDYLGEFRYYLDTIWEGAGGGMELLGPPMKSLLQCNWKVPAENFIGDGYHVGWTHAAALS 217 (454)
T ss_dssp --CHHHHHGGGHHHHHHHHTTTTTCEEEEEEEEEEEESSCTHHHHHHHHHBCTTHHHHTHHHHH
T ss_pred --CHHHHhhhhHHHHHHHHhcCCCceEEEeeEEEEEeCCCccchhhhcCCccCCCCcCCHhHHh
Confidence 3444322 1345554 356778999999999999 799999999976654
No 10
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=100.00 E-value=8.7e-40 Score=336.03 Aligned_cols=180 Identities=19% Similarity=0.291 Sum_probs=154.1
Q ss_pred ccc-CCCCCCchhhhhhhccCCcccccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEE
Q 015101 55 QTC-ASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 132 (413)
Q Consensus 55 ~~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~i~a 132 (413)
.++ .+.|+|+++|+.|++++|. +.|++||+++||+ +|+++++.++|++|+|+|+.+|+++|
T Consensus 12 ~~~~~~~y~~~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a 74 (447)
T 2bmo_A 12 LTQKLLIHGDKELFQHELKTIFA-----------------RNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRA 74 (447)
T ss_dssp CEEEGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CCCccceeCCHHHHHHHHHHhhc-----------------cCCeEEeEHHHCCCCCCeEEEEECCeeEEEEECCCCCEEE
Confidence 456 7889999999999999985 4699999999998 69999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCcc-cCCeEecCCCCeEEecCCCccccCCcc--------cccccccccc-eeeeCCeEEEcCCCCC
Q 015101 133 VQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQ--------LRNVKIKSLP-CFEQEGMIWIWPGDEP 202 (413)
Q Consensus 133 ~~n~CpHrg~~L~~g~~-~~~~l~CpyHgw~fd~~G~~~~~P~~~--------~~~~~l~~~~-v~~~~G~I~v~~~~~~ 202 (413)
|.|+|||||++|+.|.. +++.|+||||||+||.||+|+.+|+.. ....+|++|| |++++|+|||++++++
T Consensus 75 ~~n~CpHrga~L~~g~~g~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~v~~~~G~v~v~~~~~~ 154 (447)
T 2bmo_A 75 FLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEA 154 (447)
T ss_dssp EESBCTTTCCBCCCSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEESCTTC
T ss_pred EeccCcCCCCCccccccCCcCeEECCCCcchhcCCCcccccCcccccccccCCHhHCCCcccceEEEECCEEEEEcCCCC
Confidence 99999999999999865 578999999999999999999999743 2246899998 9999999999998765
Q ss_pred CCCCCCCCCC------------CCCceEe-EEEEEEeecChhhhhhcc-CCCcccCccCcccccc
Q 015101 203 PTATIPCLLP------------PSGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFAK 253 (413)
Q Consensus 203 ~~~~~p~~~~------------~~~~~~~-~~~~~~~~~nwk~~~EN~-~D~~H~~~~H~~t~~~ 253 (413)
| +++++++ ..++.+. +...++++||||+++||+ +|+||++++|..+++.
T Consensus 155 ~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~~D~yH~~~~H~~~l~~ 217 (447)
T 2bmo_A 155 P--PLIDYLGDAAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRA 217 (447)
T ss_dssp C--CHHHHHTTHHHHHHHHHTTTSCEEEEEEEEEEEESSCHHHHHHHHHHBCTTHHHHTHHHHHH
T ss_pred C--CHHHHhccHHHHHHHHhccCCCeEEeeeeEEEEECCCcchhhhcCCCCCCCCcccchhhhhc
Confidence 4 3444332 2345554 356788999999999999 7999999999776653
No 11
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=100.00 E-value=3.5e-39 Score=333.43 Aligned_cols=181 Identities=19% Similarity=0.333 Sum_probs=152.4
Q ss_pred cccccCCCCCCchhhhhhhccCCcccccccCCCCCccccccCceEEeeecCCCCC-CCeEEEEECCeeEEEEEcCCCcEE
Q 015101 53 TDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPG 131 (413)
Q Consensus 53 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~~-g~~~~~~~~g~~vvv~R~~~G~i~ 131 (413)
...++.+.|+|+++|++|++++|+ +.|++||+++||++ |++++++++|++|+|+|+.+|+++
T Consensus 20 ~~~lp~~~Ytd~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~g~~vvv~R~~~G~v~ 82 (470)
T 2b1x_A 20 DWTVPAAIINDPEVHDVERERIFG-----------------HAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIR 82 (470)
T ss_dssp TCEEEGGGSSCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEE
T ss_pred CCcCCHHHcCCHHHHHHHHHHHhh-----------------cCCeEeeeHHHCCCCCCeEEEEECCeEEEEEEcCCCCEE
Confidence 345778899999999999999985 56999999999984 899999999999999999999999
Q ss_pred EEecCCCCCCCCCCCCccc-CCeEecCCCCeEEecCCCccccCCccc--------ccccccccc-eeeeCCeEEEcCCCC
Q 015101 132 CVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSLP-CFEQEGMIWIWPGDE 201 (413)
Q Consensus 132 a~~n~CpHrg~~L~~g~~~-~~~l~CpyHgw~fd~~G~~~~~P~~~~--------~~~~l~~~~-v~~~~G~I~v~~~~~ 201 (413)
||.|+|||||++|+.|... ++.|+||||||+||.||+|+.+|+.+. ...+|.++| +++++|+|||+++++
T Consensus 83 a~~n~C~Hrga~L~~g~~~~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~p~ve~~~G~Vfv~~~~~ 162 (470)
T 2b1x_A 83 GHLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPH 162 (470)
T ss_dssp EEESSCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEEESCTT
T ss_pred EEecccCCCCCEeeccCcCCCCEEEECCCCCeecCCCceeecCcccccccccCCHhhCCCcccceEEEECCEEEEEeCCC
Confidence 9999999999999998654 479999999999999999999998531 246788884 566799999999876
Q ss_pred CCCCCCCCCCC-------------CCCceEeE-EEEEEeecChhhhhhcc-CCCcccCccCccccc
Q 015101 202 PPTATIPCLLP-------------PSGFEIHA-EIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFA 252 (413)
Q Consensus 202 ~~~~~~p~~~~-------------~~~~~~~~-~~~~~~~~nwk~~~EN~-~D~~H~~~~H~~t~~ 252 (413)
++ +++++++ ..++.+.+ ...++++||||+++||+ +|+||++++|++++.
T Consensus 163 ~~--~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~NWk~~~EN~~~D~yH~~~~H~~~~~ 226 (470)
T 2b1x_A 163 AD--SLEDYLGDLKFYLDIVLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVE 226 (470)
T ss_dssp CC--CHHHHHGGGHHHHHHHHCSSSSCEEECSCCEEEEESSCTHHHHHHHHHCCTTHHHHTHHHHH
T ss_pred CC--CHHHHhcchhHHHHHHhccCCCCeEEEeeeEEEEeccCHhhhhhccccccCcccccChhhhh
Confidence 54 3444322 23555544 56778999999999999 999999999998754
No 12
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=100.00 E-value=9.3e-39 Score=327.51 Aligned_cols=180 Identities=18% Similarity=0.274 Sum_probs=156.1
Q ss_pred ccccCCCCCCchhhhhhhccCCcccccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEE
Q 015101 54 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 132 (413)
Q Consensus 54 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~i~a 132 (413)
..++...|||+++|+.|+++||+ +.|++||+++||+ +|++++++++|++|+|+|+.+|+++|
T Consensus 33 ~~~~~~~Ytd~~~~~~E~~~if~-----------------~~W~~v~~~~elp~~G~~~~~~i~~~~vvv~R~~dG~v~A 95 (457)
T 3gzx_A 33 GKLDARIYADQDLYQLELERVFG-----------------RSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIKV 95 (457)
T ss_dssp TEEEGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CcCCHHHcCCHHHHHHHHHHHHh-----------------cCCEEEeEHHHcCCCCCeEEEEECCEEEEEEECCCCeEEE
Confidence 45778899999999999999985 5699999999997 69999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCc-ccCCeEecCCCCeEEecCCCccccCCcc--------------cccccccccceeeeCCeEEEc
Q 015101 133 VQNTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQ--------------LRNVKIKSLPCFEQEGMIWIW 197 (413)
Q Consensus 133 ~~n~CpHrg~~L~~g~-~~~~~l~CpyHgw~fd~~G~~~~~P~~~--------------~~~~~l~~~~v~~~~G~I~v~ 197 (413)
|.|+|||||++|+.|. ++++.|+||||||+||.+|+|+.+|+.+ +...+|++|+|.+++|+||||
T Consensus 96 ~~n~C~Hrga~L~~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv~ 175 (457)
T 3gzx_A 96 FLNQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFAN 175 (457)
T ss_dssp EESCCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEEE
T ss_pred EeCcCCCCCcCccCCCCCcCCEEEcCCCCCEecCCCcceecCccccccccccccccccChhhCCCceEeEEEECCEEEEe
Confidence 9999999999999985 6788999999999999999999999853 124678999999999999999
Q ss_pred CCCCCCCCCCCCCCCC-------------CCceEe-EEEEEEeecChhhhhhcc-CCCcccC-ccCccccc
Q 015101 198 PGDEPPTATIPCLLPP-------------SGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAP-FTHTSTFA 252 (413)
Q Consensus 198 ~~~~~~~~~~p~~~~~-------------~~~~~~-~~~~~~~~~nwk~~~EN~-~D~~H~~-~~H~~t~~ 252 (413)
+++++| ++++++++ .++++. +...+.++||||+++||+ +|+||++ ++|.++++
T Consensus 176 ~~~~ap--~l~e~lg~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~~D~yH~~~~~H~~~~~ 244 (457)
T 3gzx_A 176 WDPEAP--DLKTYLSDAMPYMDVMLDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVL 244 (457)
T ss_dssp SCTTSC--CHHHHTTTCHHHHHHHHSSSTTCEEECSCCEEEEESSCHHHHHHHHHHBCTTTTTTTTHHHHH
T ss_pred cCCCCC--ChHHHHhhhHHHHHHHhccCCCceEEEcceEEEEEccccchhhhccccccCCcccceehhhhh
Confidence 988654 45555432 245554 256788999999999999 8999999 99998765
No 13
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=100.00 E-value=1.1e-37 Score=321.33 Aligned_cols=179 Identities=19% Similarity=0.291 Sum_probs=151.4
Q ss_pred ccccCCCCCCchhhhhhhccCCcccccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEE
Q 015101 54 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 132 (413)
Q Consensus 54 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~i~a 132 (413)
..++.+.|+|+++|+.|++++|. +.|++||+++||+ +|+++++.++|.+|+|+|+.+|+++|
T Consensus 31 ~~~p~~~y~d~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~i~~~~vvv~R~~~G~v~a 93 (460)
T 1uli_A 31 GRLDPRIYTDEALYEQELERIFG-----------------RSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRV 93 (460)
T ss_dssp TEECGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CcCCHHHcCCHHHHHHHHHHhhh-----------------cCceEEEEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEE
Confidence 35677789999999999999985 5699999999998 58899999999999999999999999
Q ss_pred EecCCCCCCCCCCCCcc-cCCeEecCCCCeEEecCCCccccCCcc-------cccccccccceeeeCCeEEEcCCCCCCC
Q 015101 133 VQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQ-------LRNVKIKSLPCFEQEGMIWIWPGDEPPT 204 (413)
Q Consensus 133 ~~n~CpHrg~~L~~g~~-~~~~l~CpyHgw~fd~~G~~~~~P~~~-------~~~~~l~~~~v~~~~G~I~v~~~~~~~~ 204 (413)
|.|+|||||++|+.|.. +++.|+||||||+||.||+|+.+|+.. ....+|++|+|++++|+|||++++++|
T Consensus 94 ~~n~CpHrga~L~~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p- 172 (460)
T 1uli_A 94 FLNQCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDADAP- 172 (460)
T ss_dssp EESCCTTTCCCSCCSSEEECSCEECTTTCCEECTTCCEEECTTHHHHCTTCCGGGSSCCEEEEEEETTEEEEECCTTSC-
T ss_pred EeeeCCCCCCCCccccCCCCCEEEcCCCCCEEeCCCCEeeCCccccccCCCCHhHcCCceeeEEEECCEEEEEeCCCCC-
Confidence 99999999999998764 568999999999999999999999753 124679999999999999999987654
Q ss_pred CCCCCCCCC-------------CCceEe-EEEEEEeecChhhhhhcc-CCCccc-CccCcccc
Q 015101 205 ATIPCLLPP-------------SGFEIH-AEIVMELPIEHGLLLDNL-LDLAHA-PFTHTSTF 251 (413)
Q Consensus 205 ~~~p~~~~~-------------~~~~~~-~~~~~~~~~nwk~~~EN~-~D~~H~-~~~H~~t~ 251 (413)
++++++++ .++.+. ....++++||||+++||+ +|+||+ .++|..++
T Consensus 173 -~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~~H~~~~ 234 (460)
T 1uli_A 173 -DLDTYLGEAKFYMDHMLDRTEAGTEAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGI 234 (460)
T ss_dssp -CHHHHHTTHHHHHHHHHCSSTTCEEECSCCEEEEECSCHHHHHHHHHHBHHHHHTTTTHHHH
T ss_pred -CHHHHhcchHHHHHHHhhcCCCceEEEeeEEEEEeccCHHHHHhhcCCCCCCchhhhhhhcc
Confidence 34443221 234442 445678999999999999 799999 69998665
No 14
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.95 E-value=1e-27 Score=197.41 Aligned_cols=100 Identities=19% Similarity=0.325 Sum_probs=94.5
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEec-CCCccccC
Q 015101 95 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMP 173 (413)
Q Consensus 95 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~-~G~~~~~P 173 (413)
.|++|+.++||++|+++.+++.|++++|+| .+|+++|+.|+|||||++|+.|.++++.|+||||||+||. +|+|+.+|
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~~G~~~~~P 81 (103)
T 2qpz_A 3 KWIEAVALSDILEGDVLGVTVEGKELALYE-VEGEIYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCAP 81 (103)
T ss_dssp CEEEEEETTSCCTTCEEEEEETTEEEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTTCEEETTTCCEEETT
T ss_pred ccEEEEEHHHcCCCCEEEEEECCEEEEEEE-ECCEEEEECCcCCCCCCCCCCCeEeCCEEECCCCCCEEeCCCCCEeCCC
Confidence 599999999999999999999999999999 7999999999999999999999888899999999999997 99999999
Q ss_pred CcccccccccccceeeeCCeEEEcCC
Q 015101 174 STQLRNVKIKSLPCFEQEGMIWIWPG 199 (413)
Q Consensus 174 ~~~~~~~~l~~~~v~~~~G~I~v~~~ 199 (413)
+. .+|++||+++++|+|||+++
T Consensus 82 ~~----~~L~~~~v~~~~g~v~v~~~ 103 (103)
T 2qpz_A 82 VT----QNIKTYPVKIENLRVMIDLS 103 (103)
T ss_dssp CC----SCCCEECEEEETTEEEEECC
T ss_pred CC----CCCCEEeEEEECCEEEEEcC
Confidence 74 47999999999999999874
No 15
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.95 E-value=2.6e-27 Score=198.05 Aligned_cols=102 Identities=18% Similarity=0.243 Sum_probs=95.6
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCC-cccCCeEecCCCCeEEec-CCCcccc
Q 015101 95 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG-SVNEGRIQCPYHGWEYST-DGKCEKM 172 (413)
Q Consensus 95 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g-~~~~~~l~CpyHgw~fd~-~G~~~~~ 172 (413)
.|++|+.++||++|+++.+++.|++|+|+|. +|+++|+.|+|||||++|+.| .++++.|+||||||+||. ||+|+.+
T Consensus 5 ~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~~i~CP~Hg~~Fd~~tG~~~~~ 83 (112)
T 1fqt_A 5 KFTRVCDRRDVPEGEALKVESGGTSVAIFNV-DGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSP 83 (112)
T ss_dssp CCEEEEEGGGSCTTCEEEEEETTEEEEEEEE-TTEEEEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEEES
T ss_pred ceEEeEeHHHCCCCCeEEEEECCEEEEEEEE-CCEEEEEECCCCCCCcCCCCCCEEcCCEEECCCCCCEEeCCCCcEeCC
Confidence 5999999999999999999999999999998 999999999999999999998 777889999999999998 8999999
Q ss_pred CCcccccccccccceeeeCCeEEEcCCCC
Q 015101 173 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE 201 (413)
Q Consensus 173 P~~~~~~~~l~~~~v~~~~G~I~v~~~~~ 201 (413)
|+. ..|++|++++++|+|||+++++
T Consensus 84 P~~----~~L~~~~v~~~~g~v~v~~~~~ 108 (112)
T 1fqt_A 84 PPC----EALKIFPIRIEDNDVLVDFEAG 108 (112)
T ss_dssp SCC----SCCCBCCEEEETTEEEECTTCC
T ss_pred CCC----CCccEEEEEEECCEEEEEeccc
Confidence 973 5799999999999999998654
No 16
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.95 E-value=7.1e-28 Score=200.15 Aligned_cols=102 Identities=24% Similarity=0.380 Sum_probs=94.7
Q ss_pred ceEEeeecCCCCCCCeEEEEECCee-EEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEec-CCCcccc
Q 015101 95 FWFPVAFSTDLKDDTMVPFDCFEEP-WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM 172 (413)
Q Consensus 95 ~W~~v~~~~el~~g~~~~~~~~g~~-vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~-~G~~~~~ 172 (413)
.|++|+.++||++|+++.+++.|++ ++|+|+ +|+++|+.|+|||||++|+.|.++++.|+||||||+||. ||+|+.+
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~tG~~~~~ 81 (108)
T 2i7f_A 3 NKLRLCQVASVKDGEPVAVYQEKMPALAVYNV-DGEVFVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIATGAAKAF 81 (108)
T ss_dssp CEEEEEEGGGCBTTBCEEECCTTSSCEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTEEECSSTTCEEETTTCCBCST
T ss_pred ccEEEEEHhHcCCCCeEEEEECCeeEEEEEEE-CCEEEEEeCcCCCCCCCCCCCEEeCCEEEcCCCCCEEeCCCcCEeCC
Confidence 4999999999999999999999999 999998 999999999999999999999888899999999999996 9999999
Q ss_pred CCcccccccccccceeeeCCeEEEcCCCC
Q 015101 173 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE 201 (413)
Q Consensus 173 P~~~~~~~~l~~~~v~~~~G~I~v~~~~~ 201 (413)
|+. ..|++|++++++|+|||+++++
T Consensus 82 P~~----~~L~~~~v~~~~g~v~v~~~~~ 106 (108)
T 2i7f_A 82 PCQ----IPIKTYPVTIEDGWVCIDQPKE 106 (108)
T ss_dssp TCC----SCCCEECEEEETTEEEEECC--
T ss_pred CCC----CCccEEeEEEECCEEEEeCCCC
Confidence 974 5799999999999999998754
No 17
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.95 E-value=1.8e-27 Score=198.68 Aligned_cols=104 Identities=19% Similarity=0.292 Sum_probs=96.1
Q ss_pred ceEEeeecCCCCCCCeEEEEE-CCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEec-CCCcccc
Q 015101 95 FWFPVAFSTDLKDDTMVPFDC-FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM 172 (413)
Q Consensus 95 ~W~~v~~~~el~~g~~~~~~~-~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~-~G~~~~~ 172 (413)
.|+.|+.++||++|+.+.+++ +|++++|+|..+|+++|+.|+|||||++|+.|.++++.|+||||||+||. +|+|+.
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~tG~~~~- 79 (111)
T 1vm9_A 1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN- 79 (111)
T ss_dssp CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEETTTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBSS-
T ss_pred CcEEEEEHHHCCCCCeEEEEEcCCCEEEEEEeCCCeEEEEeCcCCCCCcCCCCceEcCCEEEcCCCCCEEeCCCccCCC-
Confidence 499999999999999999999 99999999988999999999999999999999888899999999999998 599998
Q ss_pred CCcccccccccccceeeeCCeEEEcCCCCCC
Q 015101 173 PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 203 (413)
Q Consensus 173 P~~~~~~~~l~~~~v~~~~G~I~v~~~~~~~ 203 (413)
|. ...|++|++++++|+|||++++.++
T Consensus 80 p~----~~~L~~~~v~~~~g~v~v~~~~~~~ 106 (111)
T 1vm9_A 80 PD----DAALAEYPVEVKGDDIYVSTKGILP 106 (111)
T ss_dssp SS----SCBCCEECEEEETTEEEECCTTCCC
T ss_pred CC----cCCcCEEEEEEECCEEEEeccCcCC
Confidence 65 3589999999999999999977543
No 18
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.95 E-value=7.4e-28 Score=202.40 Aligned_cols=104 Identities=21% Similarity=0.463 Sum_probs=96.0
Q ss_pred cCceEEeeecCCCCCCCeEEEEECCe-eEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEec-CCCcc
Q 015101 93 KNFWFPVAFSTDLKDDTMVPFDCFEE-PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCE 170 (413)
Q Consensus 93 ~~~W~~v~~~~el~~g~~~~~~~~g~-~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~-~G~~~ 170 (413)
.+.|++||.++||++|+++.+++.|+ +|+|+|. +|+++|+.|+|||||++|+.|.++++.|+||||||+||+ +|+|+
T Consensus 2 ~~~w~~v~~~~el~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~ 80 (115)
T 2de6_D 2 NQIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRV-GDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPA 80 (115)
T ss_dssp --CCEEEEEGGGCCTTEEEEEEETTEEEEEEEEE-TTEEEEEESBCTTSSCBGGGSEEETTEEECTTTCCEEETTTCCEE
T ss_pred CcceEEeEEHHHCCCCCeEEEEECCccEEEEEEE-CCEEEEEeCCCCCCCCCCcCCEEeCCEEECCCCCCEEcCCCcCEe
Confidence 36799999999999999999999999 9999998 999999999999999999999888899999999999996 99999
Q ss_pred ccCCcccccccccccceeeeCCeEEEcCCCC
Q 015101 171 KMPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 201 (413)
Q Consensus 171 ~~P~~~~~~~~l~~~~v~~~~G~I~v~~~~~ 201 (413)
.+|+. ..|++||+++++|+|||++++.
T Consensus 81 ~~P~~----~~L~~~~v~~~~g~V~v~~~~~ 107 (115)
T 2de6_D 81 SSPCT----VPLGVFEVEVKEGEVYVAGEKK 107 (115)
T ss_dssp ETTCC----SCCCEEEEEESSSEEEEEEEEC
T ss_pred CCCCc----CCCCEEEEEEECCEEEEecCCc
Confidence 99974 5799999999999999998654
No 19
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.94 E-value=1.8e-27 Score=197.00 Aligned_cols=101 Identities=23% Similarity=0.347 Sum_probs=95.0
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEe-cCCCccccC
Q 015101 95 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS-TDGKCEKMP 173 (413)
Q Consensus 95 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd-~~G~~~~~P 173 (413)
.|++||.++||++|+.+.+.++|.+|+|+| .+|+++|+.|+|||+|++|+.|.++++.|+||||||+|| .+|+|+.+|
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~~P 79 (106)
T 3dqy_A 1 TWTYILRQGDLPPGEMQRYEGGPEPVMVCN-VDGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALP 79 (106)
T ss_dssp CCEEEEEGGGSCTTCEEEECCSSSCEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCCEEETT
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEE-ECCEEEEEeCcCCCCCCCCcCcEEeCCEEECCCCCCEEeCCCCCEeCCC
Confidence 499999999999999999999999999999 699999999999999999999988889999999999999 599999999
Q ss_pred CcccccccccccceeeeCCeEEEcCCC
Q 015101 174 STQLRNVKIKSLPCFEQEGMIWIWPGD 200 (413)
Q Consensus 174 ~~~~~~~~l~~~~v~~~~G~I~v~~~~ 200 (413)
+. ..|++||+++.+|.|||++++
T Consensus 80 ~~----~~L~~~~v~~~~g~v~v~~~~ 102 (106)
T 3dqy_A 80 AC----KPIKVFPIKVEGDEVHVDLDN 102 (106)
T ss_dssp CC----SCCCEECEEEETTEEEECGGG
T ss_pred CC----CCccEEEEEEECCEEEEEccc
Confidence 73 579999999999999998864
No 20
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.94 E-value=1.2e-26 Score=196.85 Aligned_cols=102 Identities=20% Similarity=0.317 Sum_probs=94.6
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCC--cccCCeEecCCCCeEEe-cCCCccc
Q 015101 95 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SVNEGRIQCPYHGWEYS-TDGKCEK 171 (413)
Q Consensus 95 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g--~~~~~~l~CpyHgw~fd-~~G~~~~ 171 (413)
.|++||.++||++|+++.+++.|++|+|+|. +|+++|+.|+|||+|++|+.| .++++.|+||||||+|| .+|+|+.
T Consensus 10 ~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~-~g~~~A~~n~CpH~g~~L~~G~~~~~~~~i~CP~Hg~~Fdl~tG~~~~ 88 (121)
T 3gce_A 10 TPVRVATLDQLKPGVPTAFDVDGDEVMVVRD-GDSVYAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPTA 88 (121)
T ss_dssp CCEEEEEGGGSCTTCCEEEEETTEEEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTTTEEECTTTCCEEETTTCCEEE
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEEE-CCEEEEEeCcCCCCCCCCCCCceeecCCEEEcCCCCCEEcCCCccEeC
Confidence 5999999999999999999999999999996 999999999999999999999 78889999999999999 5999999
Q ss_pred cCCcccccccccccceeeeCCeEEEcCCCC
Q 015101 172 MPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 201 (413)
Q Consensus 172 ~P~~~~~~~~l~~~~v~~~~G~I~v~~~~~ 201 (413)
+|+. ..|++||+++++|.|||+++..
T Consensus 89 ~P~~----~~L~~~~v~v~~g~V~v~~~~~ 114 (121)
T 3gce_A 89 LPCV----LPVRAYDVVVDGTEILVAPKEA 114 (121)
T ss_dssp TTCC----SCCCBCCEEEETTEEEECCC--
T ss_pred CCCc----CCcceEEEEEECCEEEEEECcc
Confidence 9984 4799999999999999998654
No 21
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.94 E-value=8e-27 Score=197.25 Aligned_cols=103 Identities=14% Similarity=0.016 Sum_probs=94.9
Q ss_pred CceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCC-CCCCCcccCC----eEecCCCCeEEec-CC
Q 015101 94 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC-PLHLGSVNEG----RIQCPYHGWEYST-DG 167 (413)
Q Consensus 94 ~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~-~L~~g~~~~~----~l~CpyHgw~fd~-~G 167 (413)
..|++||.++||++|+++.+.++|++|+|+|+.+|+++|+.|+|||||+ +|+.|.+.+. .|+||||||+||. ||
T Consensus 4 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~~~G~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG 83 (119)
T 3c0d_A 4 LTKVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSG 83 (119)
T ss_dssp CCEEEEEEGGGSCBTCCEEEEETTEEEEEEEETTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTTC
T ss_pred CccEEEEEHHHCCCCCeEEEEECCeEEEEEEecCCeEEEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCCC
Confidence 4699999999999999999999999999999889999999999999999 8999876532 8999999999997 99
Q ss_pred CccccCCcccccccccccceeeeCCeEEEcCCCC
Q 015101 168 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 201 (413)
Q Consensus 168 ~~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~~~~ 201 (413)
+|+.+|+ ..|++|||++.+|.|||++++.
T Consensus 84 ~~~~~P~-----~~l~~~~v~v~~g~V~v~~~~~ 112 (119)
T 3c0d_A 84 QCLEDEA-----HCLKTWRVTVDDNQVCYLAKEL 112 (119)
T ss_dssp BBSSCTT-----CBCCEECEEESSSEEEEECCCC
T ss_pred cCCCCCC-----ceeeEEEEEEECCEEEEEeCCc
Confidence 9999987 4799999999999999998654
No 22
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.94 E-value=1.3e-26 Score=194.00 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=92.4
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCC-cEEEEecCCCCCCC-CCCCCccc---CC-eEecCCCCeEEec-CC
Q 015101 95 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDG-IPGCVQNTCAHRAC-PLHLGSVN---EG-RIQCPYHGWEYST-DG 167 (413)
Q Consensus 95 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G-~i~a~~n~CpHrg~-~L~~g~~~---~~-~l~CpyHgw~fd~-~G 167 (413)
.|+.||.++||++|+++.+++.|++++|+|..+| +++|+.|+|||||+ +|+.|.+. ++ .|+||||||+||. +|
T Consensus 6 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~tG 85 (113)
T 2jo6_A 6 QWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDG 85 (113)
T ss_dssp CCEEEEETTTSCTTEEEEEEETTEEEEEEECSSSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTTT
T ss_pred hheEEeeHHHCCCCCeEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCCCc
Confidence 4999999999999999999999999999998899 69999999999999 79998764 23 8999999999997 99
Q ss_pred CccccCCcccccccccccceeeeCCeEEEcCC
Q 015101 168 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG 199 (413)
Q Consensus 168 ~~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~~ 199 (413)
+|+.+|+ ..|++|||++.+|+|||+++
T Consensus 86 ~~~~~P~-----~~l~~~~v~v~~g~V~v~~~ 112 (113)
T 2jo6_A 86 LCMEDEQ-----FSVKHYEARVKDGVVQLRGG 112 (113)
T ss_dssp EETTTTT-----TCCCEEEEEEETTEEEEECC
T ss_pred cCCCCCc-----ccccEEeEEEECCEEEEEcC
Confidence 9999986 57999999999999999874
No 23
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.93 E-value=3.7e-26 Score=196.17 Aligned_cols=104 Identities=17% Similarity=0.167 Sum_probs=94.6
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCC-cEEEEecCCCCCCC-CCCCCccc---C-CeEecCCCCeEEec-CC
Q 015101 95 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDG-IPGCVQNTCAHRAC-PLHLGSVN---E-GRIQCPYHGWEYST-DG 167 (413)
Q Consensus 95 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G-~i~a~~n~CpHrg~-~L~~g~~~---~-~~l~CpyHgw~fd~-~G 167 (413)
.|+.||.++||++|+++.++++|++++|+|+.+| +++|+.|+|||||+ +|+.|.+. + ..|+||||||+||. ||
T Consensus 3 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG 82 (130)
T 2jza_A 3 QWTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDG 82 (130)
T ss_dssp SEEEEEETTTSCTTBCCEEEETTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTTC
T ss_pred ceEEEEEHHHCCCCCeEEEEECCcEEEEEEECCCCEEEEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCCCc
Confidence 5999999999999999999999999999998788 99999999999999 59999764 3 38999999999997 99
Q ss_pred CccccCCcccccccccccceeeeCCeEEEcCCCCCC
Q 015101 168 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 203 (413)
Q Consensus 168 ~~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~~~~~~ 203 (413)
+|+.+|+ ..|++|||++++|+|||++++.++
T Consensus 83 ~~~~~P~-----~~L~~~~v~v~~g~V~V~~~~~~~ 113 (130)
T 2jza_A 83 FCLEDGA-----YSVAAYDTQVTNGNVQISIADSDV 113 (130)
T ss_dssp CBSSCCS-----SCCBCCCEEESSSEEEEECCCCCC
T ss_pred CCCCCCc-----CcceEEEEEEECCEEEEEeCCCCC
Confidence 9999996 579999999999999999976543
No 24
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.93 E-value=6e-26 Score=191.74 Aligned_cols=101 Identities=20% Similarity=0.218 Sum_probs=88.4
Q ss_pred CceEEeeecCCCCCCCeEEEEEC-CeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccC-----CeEecCCCCeEEe-cC
Q 015101 94 NFWFPVAFSTDLKDDTMVPFDCF-EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-----GRIQCPYHGWEYS-TD 166 (413)
Q Consensus 94 ~~W~~v~~~~el~~g~~~~~~~~-g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~-----~~l~CpyHgw~fd-~~ 166 (413)
+.|++||.++||++|..+.+.+. |++|+|||..||+++|+.|+|||+|++|+.|...+ ..|+||||||+|| .|
T Consensus 8 ~~W~~Vc~~~dL~~g~~~~~~~~~G~~v~l~r~~dG~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~t 87 (119)
T 4aiv_A 8 QVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDD 87 (119)
T ss_dssp EEEEEEEEGGGSCTTCCEEEECTTSCEEEEEECTTSCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred cceeEeeEHHHcCCCCceEEEEcCCcEEEEEEcCCCeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCCC
Confidence 46999999999999988888885 79999999999999999999999999998765322 3599999999999 58
Q ss_pred CCccccCCcccccccccccceee-eCCeEEEcCC
Q 015101 167 GKCEKMPSTQLRNVKIKSLPCFE-QEGMIWIWPG 199 (413)
Q Consensus 167 G~~~~~P~~~~~~~~l~~~~v~~-~~G~I~v~~~ 199 (413)
|+|+..|. .+|++|||++ .+|.|||...
T Consensus 88 G~~~~~p~-----~~l~~ypv~ve~dG~V~V~~~ 116 (119)
T 4aiv_A 88 GSCLDDPR-----VSVPVYPARVTPEGRIQVARV 116 (119)
T ss_dssp CBBSSCTT-----CBCCEECEEECTTSEEEEEEE
T ss_pred CcCcCCCC-----CccceEEEEEEeCCEEEEecC
Confidence 99999986 4699999975 5899999753
No 25
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.93 E-value=2.4e-26 Score=203.62 Aligned_cols=110 Identities=24% Similarity=0.387 Sum_probs=95.1
Q ss_pred ccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccC----CeEecCCCCeEEec-C
Q 015101 92 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE----GRIQCPYHGWEYST-D 166 (413)
Q Consensus 92 ~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~----~~l~CpyHgw~fd~-~ 166 (413)
..+.|++||+++||++|+++.++++|++|+|+| .+|+++||.|+|||||++|+.|.+.+ +.|+||||||+||. +
T Consensus 13 ~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r-~~G~v~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~t 91 (157)
T 3d89_A 13 KKYTSVCVGREEDIRKSERMTAVVHDREVVIFY-HKGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLAT 91 (157)
T ss_dssp -CCSCEEEEEHHHHHHHSEEEEEETTEEEEEEE-ETTEEEEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred CCCceEEEEEHHHCCCCCeEEEEECCEEEEEEE-ECCEEEEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecCC
Confidence 356799999999999899999999999999999 69999999999999999999998653 68999999999998 9
Q ss_pred CCccc--c-CCccc-------ccccccccceeeeCCeEEEcCCCCC
Q 015101 167 GKCEK--M-PSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEP 202 (413)
Q Consensus 167 G~~~~--~-P~~~~-------~~~~l~~~~v~~~~G~I~v~~~~~~ 202 (413)
|+|+. + |.... ...+|++|+|++++|+|||++++++
T Consensus 92 G~~~~~~i~P~~~~~~~~~~~~~~~L~~~~v~v~~G~V~V~~~~~~ 137 (157)
T 3d89_A 92 GEGLYQSINPKDPSAKPKWCSKGVKQRIHTVKVDNGNIYVTLSKEP 137 (157)
T ss_dssp CEEEEEECCCC-----CEEEEEEECSCEEEEEEETTEEEEECCCCS
T ss_pred cCEEEeccCCCccccccccccccCcceEEEEEEECCEEEEEeCCCC
Confidence 99986 3 64211 1367999999999999999998754
No 26
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.89 E-value=1e-23 Score=189.16 Aligned_cols=144 Identities=14% Similarity=0.129 Sum_probs=87.7
Q ss_pred HHHHHHHhhhhhhhcCCCCCCcccc-cCCCCCCchhhhhhhccCCcccccccCCCCCccccccCceEEeeecCCCCCCCe
Q 015101 32 KLAYMEALVNDRLLQDRHTSGTDQT-CASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTM 110 (413)
Q Consensus 32 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~~g~~ 110 (413)
+-..|.++.||.||+++.++.++.. ++-+..... .+ . ..+. ...++ -+..||.++||++|+.
T Consensus 3 ~~~~~~~~~rr~fl~~~~~a~~~~~~~~~~~~~~~------~~----~--~~~~--~~~~~---p~~~v~~~~dL~~g~~ 65 (175)
T 4aay_B 3 RCQNMVDIGRRQFLRGGALAAAGATAAVFGVGAPQ------AR----A--ATAA--AGVEY---PANRLANISELTLNEP 65 (175)
T ss_dssp -----------------------------------------------------C--CSCCC---CCEEEEEGGGCBBTBC
T ss_pred cchhhccccHHHHhhhhHHhhhheeEecccccccc------cc----c--cccC--cccCC---CcceEEEHHHCCCCCE
Confidence 3456788999999997776654222 111111100 00 0 0000 11111 2458999999999999
Q ss_pred EEEEECC--eeEEEEEc---------CCCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEec--CCCccccCCccc
Q 015101 111 VPFDCFE--EPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST--DGKCEKMPSTQL 177 (413)
Q Consensus 111 ~~~~~~g--~~vvv~R~---------~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~--~G~~~~~P~~~~ 177 (413)
+.+++.+ .+++|+|. ++|+++|++|+|||+|++|++| .+++.|+||||||+||. +|+|+.+|+.
T Consensus 66 ~~v~~~~~~~pv~v~R~g~~~~~~r~~~G~v~A~~n~CpH~G~~L~~g-~~~~~i~CP~Hg~~Fd~~~tG~~~~gPa~-- 142 (175)
T 4aay_B 66 LDVAYPDEDAAGVLLKLGTRVEGGVGPDGDIVGFSTICPHKGFPLSYS-ADNKTFNCPGHFSVFDPEKGGQQVWGQAT-- 142 (175)
T ss_dssp EEEESSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEEEGGGTTEEEECSCS--
T ss_pred EEEEECCCCCEEEEEEcccccccccCCCCEEEEEeCCCCCCCCCCccC-CCCCEEEcCCCCCEECCCCCceEecCCCC--
Confidence 9999974 58999997 5999999999999999999998 56789999999999997 4999999983
Q ss_pred ccccccccceee-eCCeEEEc
Q 015101 178 RNVKIKSLPCFE-QEGMIWIW 197 (413)
Q Consensus 178 ~~~~l~~~~v~~-~~G~I~v~ 197 (413)
..|++|++++ .+|.||+-
T Consensus 143 --~~L~~y~v~vd~dG~V~av 161 (175)
T 4aay_B 143 --QNLPQYVLRVADNGDIFAE 161 (175)
T ss_dssp --SCCCBEEEEECTTSEEEEE
T ss_pred --CCcCEEEEEEEcCCEEEEE
Confidence 4799999998 68999963
No 27
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.87 E-value=3.8e-22 Score=170.85 Aligned_cols=97 Identities=16% Similarity=0.284 Sum_probs=88.6
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcC--------------------------CCcEEEEecCCCCCCCCCCCCc
Q 015101 95 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHLGS 148 (413)
Q Consensus 95 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~--------------------------~G~i~a~~n~CpHrg~~L~~g~ 148 (413)
.|..+ ..++|++|+.+.+.+.|++++|+|.. +|+++|+.|+|||+|++|+.|.
T Consensus 5 ~~~~v-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~g~ 83 (129)
T 1rie_A 5 SKIEI-KLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANA 83 (129)
T ss_dssp SSEEE-EGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETC
T ss_pred CceEe-eHHHCCCCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeeccccc
Confidence 36666 88999999999999999999999963 8999999999999999999998
Q ss_pred ccCCeEecCCCCeEEecCCCccccCCcccccccccccceee-eCCeEEE
Q 015101 149 VNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 196 (413)
Q Consensus 149 ~~~~~l~CpyHgw~fd~~G~~~~~P~~~~~~~~l~~~~v~~-~~G~I~v 196 (413)
++++.|.||||||+||.+|+|+.+|+. ..|+.||+++ .+|.|||
T Consensus 84 ~~~~~i~CP~Hg~~fd~~G~~~~~P~~----~~l~~~~v~v~~~~~v~v 128 (129)
T 1rie_A 84 GDFGGYYCPCHGSHYDASGRIRKGPAP----LNLEVPSYEFTSDDMVIV 128 (129)
T ss_dssp TTTEEEEETTTTEEEETTCCEEESSCC----SCCCCCCEEESSSSEEEE
T ss_pred CCCCEEEcCCCCCEEcCCCCEeeCCCC----CCCCceeEEEEeCCEEEE
Confidence 877899999999999999999999874 4799999998 8999987
No 28
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.85 E-value=3.7e-22 Score=172.99 Aligned_cols=102 Identities=17% Similarity=0.264 Sum_probs=88.9
Q ss_pred cCceEEeee-cCCCCCCCeEEEE-ECCeeEEEEEcCCCcE--EEEecCCCCCCCCCCCCcccCCeEecCCCCeEEecCCC
Q 015101 93 KNFWFPVAF-STDLKDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 168 (413)
Q Consensus 93 ~~~W~~v~~-~~el~~g~~~~~~-~~g~~vvv~R~~~G~i--~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~~G~ 168 (413)
...|+.++. .+||++|..+.+. +.|.+++++|+.+|++ +|++|+|||||++|+.+. .++.|+||||||+||.+|+
T Consensus 19 ~g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~~~G~i~~~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~ 97 (139)
T 1rfs_A 19 LGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNA-AENKFICPCHGSQYNNQGR 97 (139)
T ss_dssp TSCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEET-TTTEEECTTTCCEEETTCC
T ss_pred CCCEEEeehhHhhCCCCccEEEEecCCCeEEEEEeCCCcEEEEEEeCcCCCCCCCCccCC-CCCEEEcCCCCCEECCCCC
Confidence 356788887 8999987766665 5788888888889999 999999999999999887 4689999999999999999
Q ss_pred ccccCCcccccccccccceeeeCCeEEEcCC
Q 015101 169 CEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG 199 (413)
Q Consensus 169 ~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~~ 199 (413)
|+.+|+. ..|++|++++.+|.|||.+-
T Consensus 98 ~~~~P~~----~~L~~~~v~v~~g~V~V~~~ 124 (139)
T 1rfs_A 98 VVRGPAP----LSLALAHCDVDDGKVVFVPW 124 (139)
T ss_dssp EEESSCC----SCCCEEEEEEETTEEEEEEC
T ss_pred CccCCCC----CCCCEEEEEEECCEEEEEeC
Confidence 9999973 57999999999999999763
No 29
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.85 E-value=1.6e-21 Score=167.83 Aligned_cols=97 Identities=18% Similarity=0.217 Sum_probs=87.5
Q ss_pred eEEeeecCCCCCCCeEEEEEC--CeeEEEEEcC---------CCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEe
Q 015101 96 WFPVAFSTDLKDDTMVPFDCF--EEPWVIFRGK---------DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS 164 (413)
Q Consensus 96 W~~v~~~~el~~g~~~~~~~~--g~~vvv~R~~---------~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd 164 (413)
|+.||.++||++|+++.+.+. +.+++|+|.. +|+++|++|+|||+|++|+++ .+++.|+||||||+||
T Consensus 8 ~~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~~-~~~~~i~CP~Hg~~Fd 86 (133)
T 1g8k_B 8 ATAVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSYD-SSSKTFSCPCHFTEFD 86 (133)
T ss_dssp CEEEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEEE
T ss_pred ceeEEEHHHCCCCCeEEEEecCCCceEEEEEccccccccccCCCEEEEEeCcCCCCCCCCCcc-cCCCEEECCCCCCEEC
Confidence 889999999999999999986 9999999975 899999999999999999984 4568999999999999
Q ss_pred c--CCCccccCCcccccccccccceeee--CCeEEEc
Q 015101 165 T--DGKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIW 197 (413)
Q Consensus 165 ~--~G~~~~~P~~~~~~~~l~~~~v~~~--~G~I~v~ 197 (413)
. +|+|+..|+. ..|++|++++. +|.|||.
T Consensus 87 ~~~~G~~~~gP~~----~~L~~~~v~v~~~g~~V~v~ 119 (133)
T 1g8k_B 87 AEKAGQMICGEAT----ADLPRVLLRYDAASDALTAV 119 (133)
T ss_dssp GGGTTEEEESSCS----SCCCEEEEEEETTTTEEEEE
T ss_pred CCCCCCEEcCCCC----CCCCEEEEEEECCCCEEEEE
Confidence 7 8999999974 47999999988 6789984
No 30
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.70 E-value=1.3e-21 Score=167.79 Aligned_cols=97 Identities=16% Similarity=0.303 Sum_probs=81.4
Q ss_pred eecCCCCCCCeEEEE-ECCeeEEEEEcCCCc--EEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEecCCCccccCCcc
Q 015101 100 AFSTDLKDDTMVPFD-CFEEPWVIFRGKDGI--PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ 176 (413)
Q Consensus 100 ~~~~el~~g~~~~~~-~~g~~vvv~R~~~G~--i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~~G~~~~~P~~~ 176 (413)
...+++++|+...+. +.|.+.+++|..+|+ ++|+.|+|||||++|+.|. .++.|+||||||+||.+|+|+.+|+.
T Consensus 21 ~~~~~l~~g~~~~v~~l~g~~~vlv~~~~G~~~v~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~~~~~P~~- 98 (133)
T 3azc_A 21 EYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNV-SENKFICPCHGSQYDSTGKVVRGPAP- 98 (133)
Confidence 456788888777666 345555666667999 9999999999999999987 56799999999999999999999974
Q ss_pred cccccccccceee-eCCeEEEcCCCC
Q 015101 177 LRNVKIKSLPCFE-QEGMIWIWPGDE 201 (413)
Q Consensus 177 ~~~~~l~~~~v~~-~~G~I~v~~~~~ 201 (413)
..|++|||++ .+|.|||.++.+
T Consensus 99 ---~~L~~ypv~v~~~g~V~V~~~~e 121 (133)
T 3azc_A 99 ---LSLALVKATVTEDDKLVFTPWTE 121 (133)
Confidence 4799999999 999999987653
No 31
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.80 E-value=2.4e-19 Score=162.37 Aligned_cols=98 Identities=17% Similarity=0.160 Sum_probs=85.5
Q ss_pred CceEEeeecCCCCCCCeEEEEECCeeEEEEEcC--------------------------CCcEEEEecCCCCCCCCCCCC
Q 015101 94 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHLG 147 (413)
Q Consensus 94 ~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~--------------------------~G~i~a~~n~CpHrg~~L~~g 147 (413)
..|+.| ..++|++|+.+++.+.|++++|+|.. +|+++|+.|+|||+||.+...
T Consensus 61 ~~~v~V-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p~~~ 139 (185)
T 3cx5_E 61 MAKVEV-NLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGE 139 (185)
T ss_dssp CCCEEE-EGGGCCTTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEEE
T ss_pred cCcEEE-EHHHCCCCCeEEEEECCeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCceeccC
Confidence 458899 69999999999999999999999964 699999999999999965444
Q ss_pred cccCCeEecCCCCeEEecCCCccccCCcccccccccccceeeeCCeEEE
Q 015101 148 SVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI 196 (413)
Q Consensus 148 ~~~~~~l~CpyHgw~fd~~G~~~~~P~~~~~~~~l~~~~v~~~~G~I~v 196 (413)
.++.+.|.||||||+||.+|+|+.+|+. ..|+.+|+...+|.|||
T Consensus 140 ~~~~~~~~CPcHGs~FD~~G~v~~gPa~----~~L~v~p~~v~~~~I~v 184 (185)
T 3cx5_E 140 AGDFGGWFCPCHGSHYDISGRIRKGPAP----LNLEIPAYEFDGDKVIV 184 (185)
T ss_dssp ETTTTEEEETTTTEEECTTCCEEESSCC----SCCCCCCEEEETTEEEE
T ss_pred CCCCCEEEcCCCCCEECCCCCEecCCCC----CCcceEEEEEECCEEEE
Confidence 3456899999999999999999999873 46888888888999987
No 32
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.78 E-value=5.9e-19 Score=160.19 Aligned_cols=96 Identities=21% Similarity=0.231 Sum_probs=84.1
Q ss_pred eEEeeecCCCCCCCeEEEEECCeeEEEEEc----------------------------------------CCCcEEEEec
Q 015101 96 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRG----------------------------------------KDGIPGCVQN 135 (413)
Q Consensus 96 W~~v~~~~el~~g~~~~~~~~g~~vvv~R~----------------------------------------~~G~i~a~~n 135 (413)
|+.+ ..++|++|+.+.+.+.|++|+|+|. .+|+++|+.|
T Consensus 49 ~v~v-~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~~~ 127 (187)
T 2qjy_C 49 SIFV-DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWG 127 (187)
T ss_dssp CEEE-ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEEEC
T ss_pred cEEE-EHHHCCCCCeEEEEECCEEEEEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeEEEEeC
Confidence 5554 8899999999999999999999992 2899999999
Q ss_pred CCCCCCCCCCC-CcccCCeEecCCCCeEEecCCCccccCCcccccccccccceeee-CCeEEE
Q 015101 136 TCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWI 196 (413)
Q Consensus 136 ~CpHrg~~L~~-g~~~~~~l~CpyHgw~fd~~G~~~~~P~~~~~~~~l~~~~v~~~-~G~I~v 196 (413)
+|||+||+|+. +.++.+.|.||||||+||.+|+|+.+|+. ..|+.||++.. +|.|+|
T Consensus 128 ~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~~G~~~~gPa~----~~L~~~~~~v~~d~~i~i 186 (187)
T 2qjy_C 128 VCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAP----ENLPIPLAKFIDETTIQL 186 (187)
T ss_dssp CCTTTSCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC----SCCCBCSEEEEETTEEEE
T ss_pred ccCCCCeECccCcCCCcCEEEeCCCCCEECCCCeEeCCCCC----CCCceEEEEEEeCCEEEE
Confidence 99999999998 34445799999999999999999999874 47999999875 689987
No 33
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.78 E-value=5.8e-19 Score=161.05 Aligned_cols=95 Identities=18% Similarity=0.292 Sum_probs=86.4
Q ss_pred EeeecCCCCCCCeEEEEECCeeEEEEEc--------------------------CCCcEEEEecCCCCCCCCCCCCcccC
Q 015101 98 PVAFSTDLKDDTMVPFDCFEEPWVIFRG--------------------------KDGIPGCVQNTCAHRACPLHLGSVNE 151 (413)
Q Consensus 98 ~v~~~~el~~g~~~~~~~~g~~vvv~R~--------------------------~~G~i~a~~n~CpHrg~~L~~g~~~~ 151 (413)
..+..++|++|+.+.+.+.|++++|+|. .+|+++|+.|+|||+||+|+.+.++.
T Consensus 74 v~v~ls~l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~~~ 153 (196)
T 1pp9_E 74 IEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDF 153 (196)
T ss_dssp EEEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCSTT
T ss_pred cEEEHHHCCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCCCC
Confidence 3478999999999999999999999985 28999999999999999999988777
Q ss_pred CeEecCCCCeEEecCCCccccCCcccccccccccceee-eCCeEEE
Q 015101 152 GRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 196 (413)
Q Consensus 152 ~~l~CpyHgw~fd~~G~~~~~P~~~~~~~~l~~~~v~~-~~G~I~v 196 (413)
+.|.||||||+||.+|+++.+|+. ..|..+|++. .+|.|+|
T Consensus 154 ~~~~CP~HGs~FD~~G~v~~gPa~----~~L~~~p~~v~~d~~I~v 195 (196)
T 1pp9_E 154 GGYYCPCHGSHYDASGRIRKGPAP----LNLEVPSYEFTSDDMVIV 195 (196)
T ss_dssp SSEEETTTTEEECTTCCEEESSCC----SCCCCCCEEEETTTEEEE
T ss_pred CEEEeCCCCCEECCCCCCccCCCC----CCCcceeEEEEECCEEEE
Confidence 899999999999999999999874 4799999988 7899987
No 34
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=99.78 E-value=7.5e-19 Score=152.27 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=83.6
Q ss_pred eecCCCCCCCeEEEEECCeeEEEEEcC----------------------------------------CCcEEEEecCCCC
Q 015101 100 AFSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------------------DGIPGCVQNTCAH 139 (413)
Q Consensus 100 ~~~~el~~g~~~~~~~~g~~vvv~R~~----------------------------------------~G~i~a~~n~CpH 139 (413)
...++|++|+.+++...|+||.|.|.. +|+++|+.|+|||
T Consensus 6 vd~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~~C~H 85 (141)
T 2nwf_A 6 VDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTH 85 (141)
T ss_dssp EECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEECCCTT
T ss_pred EecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeCcCCC
Confidence 467899999999999999999998841 7999999999999
Q ss_pred CCCCCCC-CcccCCeEecCCCCeEEecCCCccccCCcccccccccccceee-eCCeEEE
Q 015101 140 RACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 196 (413)
Q Consensus 140 rg~~L~~-g~~~~~~l~CpyHgw~fd~~G~~~~~P~~~~~~~~l~~~~v~~-~~G~I~v 196 (413)
+||+|+. +.++++.|.||||||+||.+|+|+.+|+. ..|..||+++ .+|.|+|
T Consensus 86 ~G~~l~~~~~~~~~~~~CP~Hgs~Fd~~G~~~~gPa~----~~L~~~pv~v~~d~~i~v 140 (141)
T 2nwf_A 86 LGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGPAP----ENLPIPLAKFIDETTIQL 140 (141)
T ss_dssp TCCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC----SCCCBCSEEESSSSEEEE
T ss_pred CCeEccccCccCCCEEEcCCCCCEECCCCCCccCCCC----CCCCceeEEEEECCEEEE
Confidence 9999998 66666899999999999999999999874 4799999998 7899987
No 35
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.76 E-value=8.2e-19 Score=155.99 Aligned_cols=98 Identities=20% Similarity=0.288 Sum_probs=81.4
Q ss_pred ecCCCCCCCeEEEEECCee-------------EEEEEc-------------CCCcEEEEecCCCCCCCCCCCCcccCCeE
Q 015101 101 FSTDLKDDTMVPFDCFEEP-------------WVIFRG-------------KDGIPGCVQNTCAHRACPLHLGSVNEGRI 154 (413)
Q Consensus 101 ~~~el~~g~~~~~~~~g~~-------------vvv~R~-------------~~G~i~a~~n~CpHrg~~L~~g~~~~~~l 154 (413)
..++|++|+.+.+..-|.+ +++.|- .+| ++||.|+|||+||+|+.+.++++.|
T Consensus 26 ~~sdl~~G~~~~~~~~g~p~~~~~r~~~~~~~~~~~~~~p~~~~~~~~~~~~~g-v~A~~~~CpH~G~~L~~g~~~~~~i 104 (165)
T 1nyk_A 26 RLEELKPGDPFVLAYPMDPKTKVVKSGEAKNTLLVARFDPEELAPEVAQHAAEG-VVAYSAVCTHLGCIVSQWVADEEAA 104 (165)
T ss_dssp BGGGCCTTSCCEEEEEECTTTCCBCTTSGGGCEEEEECCGGGSCHHHHTTCBTT-EEEEECBCTTTCCBCCEEEGGGTEE
T ss_pred cHHHCCCCCEEEEEeCCCcchhhccCcchhcchheeccChhhcCccccccccCC-EEEEEeecCCCCeEcccccCCCCEE
Confidence 6788888888777764443 555564 355 9999999999999999888888899
Q ss_pred ecCCCCeEEec-CCC-ccccCCcccccccccccceeeeCCeEEEcCCCCCC
Q 015101 155 QCPYHGWEYST-DGK-CEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 203 (413)
Q Consensus 155 ~CpyHgw~fd~-~G~-~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~~~~~~ 203 (413)
.||||||+||. +|. |+.+|+. ..|..|++++.+|.|||+++...+
T Consensus 105 ~CP~Hgs~Fd~~tG~~~~~gPa~----~~L~~~~v~v~~g~V~v~~~~~~~ 151 (165)
T 1nyk_A 105 LCPCHGGVYDLRHGAQVIAGPPP----RPVPQLPVRVEDGVLVAAGEFLGP 151 (165)
T ss_dssp ECTTTCCEEEGGGTTEEEESSCS----SCCCEECEEEETTEEEECSSCSSC
T ss_pred ECCCCCCEEcCCCCCeeecCCCC----CCCcEEEEEEECCEEEEEecCccc
Confidence 99999999997 486 9999873 479999999999999999876543
No 36
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.74 E-value=3.2e-19 Score=161.06 Aligned_cols=92 Identities=18% Similarity=0.325 Sum_probs=82.0
Q ss_pred cCCCCCCCeEEEE-ECCeeEEEEEcCCCcE--EEEecCCCCCCCCCCCCcccCCeEecCCCCeEEecCCCccccCCcccc
Q 015101 102 STDLKDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 178 (413)
Q Consensus 102 ~~el~~g~~~~~~-~~g~~vvv~R~~~G~i--~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~~G~~~~~P~~~~~ 178 (413)
.++|++|+...+. +.|++++++|+.+|++ +|+.|+|||+||+|+++. .++.|.||||||+||.+|+|+.+|+.
T Consensus 70 ~~~l~~g~~~~~~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~G~~l~~~~-~~~~~~CP~Hgs~Fd~~G~~~~gPa~--- 145 (179)
T 1vf5_D 70 LESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNA-AENKFKCPCHGSQYDETGRVIRGPAP--- 145 (179)
T ss_dssp HHCCCTTCCCEESCSSSSCEECCBCTTCCBCSCCCBCBCTTTSCBCCBCS-SSSSEECTTTCCEECSSSCCCSSSCC---
T ss_pred ccccCCCceEEEeccCCCeEEEEEECCCcEEEEEEeCccCCCCCCCcccC-CCCEEECCCCCCEECCCCcEecCCCC---
Confidence 4678888877776 7789999999899998 999999999999999887 45789999999999999999999973
Q ss_pred cccccccceeeeCCeEEEcC
Q 015101 179 NVKIKSLPCFEQEGMIWIWP 198 (413)
Q Consensus 179 ~~~l~~~~v~~~~G~I~v~~ 198 (413)
..|+.||+.+.+|.|||.+
T Consensus 146 -~~L~~~~v~v~~g~v~v~~ 164 (179)
T 1vf5_D 146 -LSLALCHATVQDDNIVLTP 164 (179)
T ss_dssp -SCCBCCCCCCSSSSCCCCC
T ss_pred -CCCCeEEEEEECCEEEEEe
Confidence 5799999999999999965
No 37
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.64 E-value=1.6e-17 Score=152.49 Aligned_cols=84 Identities=18% Similarity=0.280 Sum_probs=71.4
Q ss_pred EEEEECCeeEEEEEcC------------CCcEEEEecCCCCCCCCCCCCc-----------ccCCeEecCCCCeEEecC-
Q 015101 111 VPFDCFEEPWVIFRGK------------DGIPGCVQNTCAHRACPLHLGS-----------VNEGRIQCPYHGWEYSTD- 166 (413)
Q Consensus 111 ~~~~~~g~~vvv~R~~------------~G~i~a~~n~CpHrg~~L~~g~-----------~~~~~l~CpyHgw~fd~~- 166 (413)
+.+++.+..++++|.. +|+++|+.|+|||+||+|+.|. ..++.|.||||||+||.+
T Consensus 56 ~~v~v~~~~i~v~r~~~~~~r~~ggvg~~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~t 135 (204)
T 1jm1_A 56 QITEIPNPYYGKYAGPLGQIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKD 135 (204)
T ss_dssp CCCEEECTTTTSSCTTGGGCCEEECBTTTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGG
T ss_pred ceEeeCCceEEEEecCccccccccccccCCEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCC
Confidence 5677888888888876 8999999999999999999874 256899999999999986
Q ss_pred -CCccccCCcccccccccccceeee--CCeEEEcC
Q 015101 167 -GKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIWP 198 (413)
Q Consensus 167 -G~~~~~P~~~~~~~~l~~~~v~~~--~G~I~v~~ 198 (413)
|+|+.+|+. ..|+.|++.+. +|.|||..
T Consensus 136 GG~v~~gPa~----~~L~~~~v~v~~~~g~v~v~g 166 (204)
T 1jm1_A 136 GGVVVSGPAP----RPLPIVILDYDSSTGDIYAVG 166 (204)
T ss_dssp TSEEEESSCC----SCCCBEEEEECTTTCEEEEEE
T ss_pred CCeEecCCCC----CCCCeEeeEEEecCCEEEEEe
Confidence 799999874 46888888766 89999865
No 38
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=52.48 E-value=9.9 Score=21.70 Aligned_cols=18 Identities=39% Similarity=0.588 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 015101 2 KKELAELQEDLAQAHRQV 19 (413)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (413)
-|||+.|||.+.|-+..+
T Consensus 7 ykeledlqerlrklrkkl 24 (27)
T 3twe_A 7 YKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 478889999888776554
No 39
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=36.30 E-value=36 Score=25.18 Aligned_cols=27 Identities=37% Similarity=0.490 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 015101 2 KKELAELQEDLAQAHRQVHISEARVAT 28 (413)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (413)
+.+|+.|.+.|++...++-+.||+|++
T Consensus 44 e~KLa~ln~kL~~lE~~L~iLEAklsS 70 (73)
T 3pp5_A 44 RNKLSDLNEKLTILDRQVDYLEATFKT 70 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 568999999999999999999999874
No 40
>2q0o_C Probable transcriptional repressor TRAM; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=34.93 E-value=28 Score=27.54 Aligned_cols=34 Identities=18% Similarity=0.399 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHH
Q 015101 4 ELAELQEDLAQAHRQVHISEARVATALDKLAYME 37 (413)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (413)
-|+.||.+|..|...-|.-+..|++.++.|.+..
T Consensus 66 vl~~~q~eYi~a~~e~~AQq~~lstLid~LGyvP 99 (107)
T 2q0o_C 66 VLQTLQDEYVARQKRSEAQQEELSDILDALGFVP 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3778999999999999999999999999998843
No 41
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=31.73 E-value=36 Score=23.45 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHH
Q 015101 2 KKELAELQEDLAQAHRQVHISEA 24 (413)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ 24 (413)
|.|+++|+.++..-..+..-..+
T Consensus 25 k~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 25 RLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555444444444433333
No 42
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=29.56 E-value=40 Score=25.06 Aligned_cols=27 Identities=37% Similarity=0.543 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 015101 2 KKELAELQEDLAQAHRQVHISEARVAT 28 (413)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (413)
+..|+.|.+.|++...++-+.||+|+.
T Consensus 44 e~KLa~ln~KL~~LEr~L~iLEAklss 70 (75)
T 3p8c_E 44 RSRLATLNEKLTALERRIEYIEARVTK 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567888999999999999888888863
No 43
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=28.95 E-value=1.2e+02 Score=19.75 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHH
Q 015101 1 MKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 37 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (413)
|||+++.|..+-.+-....+..|.-+..-.+.++.+|
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarle 44 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Confidence 5778888877766666666666655555555555555
No 44
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=28.90 E-value=75 Score=21.99 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=21.8
Q ss_pred ChHHHHHHHHHHH---HHHhhhhhhHHHHHHHHhHH
Q 015101 1 MKKELAELQEDLA---QAHRQVHISEARVATALDKL 33 (413)
Q Consensus 1 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 33 (413)
||.|+.+||.|.. ++-...+-++.|++..+.|+
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888887754 44455566666666666665
No 45
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=27.14 E-value=98 Score=24.08 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHH
Q 015101 3 KELAELQEDLAQAHRQVHISEARVATALDKLA 34 (413)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (413)
+.+..|++++-++..++..+...++..-..++
T Consensus 51 kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~ 82 (101)
T 3u1c_A 51 KQLRVTEDSRDQVLEELHKSEDSLLFAEENAA 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555554444444444443333333
No 46
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=24.17 E-value=71 Score=18.00 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhhh
Q 015101 3 KELAELQEDLAQAHRQV 19 (413)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (413)
|||...||.|.|.+..+
T Consensus 8 keled~qerlrk~rkkl 24 (26)
T 4g3b_A 8 KELEDXQERLRKXRKKL 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 67888888887776554
No 47
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=24.17 E-value=85 Score=26.17 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=25.0
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHH
Q 015101 1 MKKELAELQEDLAQAHRQVHISEARVATALDKLAY 35 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (413)
||+|+++|++++.+...++- +++.+..-|..+++
T Consensus 20 l~~ql~~l~~~l~~l~~~LP-~~~em~~LL~~i~~ 53 (147)
T 2rjz_A 20 YKAQMKEMEESFGALLRQLP-SDTEVPGLLEDITR 53 (147)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHHHH
Confidence 46778888888877777775 67777777777666
No 48
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=24.17 E-value=84 Score=18.68 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHH
Q 015101 4 ELAELQEDLAQAHRQVHISEARVA 27 (413)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~ 27 (413)
|.+.|..|+++|...-...|..|.
T Consensus 2 evaqlekevaqaeaenyqleqeva 25 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVA 25 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHH
Confidence 567888888888766555554443
No 49
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=23.10 E-value=1.8e+02 Score=19.75 Aligned_cols=36 Identities=8% Similarity=0.141 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHH
Q 015101 3 KELAELQEDLAQAHRQVHISEARVATALDKLAYMEA 38 (413)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (413)
..+.+|+.++.....+-+-..+-+..+-+++..|.+
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lke 44 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALRE 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888887777777777777777776654
No 50
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=22.34 E-value=1.4e+02 Score=23.14 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHH
Q 015101 2 KKELAELQEDLAQAHRQVHISEARVATALDKLA 34 (413)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (413)
++.+..|++++-++..++..+...++..-.++.
T Consensus 50 ~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~ 82 (101)
T 3u59_A 50 QKKLKGTEDEVEKYSESVKEAQEKLEQAEKKAT 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666655555555555444443333333
No 51
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=21.34 E-value=59 Score=25.16 Aligned_cols=33 Identities=15% Similarity=0.336 Sum_probs=18.1
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHH
Q 015101 1 MKKELAELQEDLAQAHRQVHISEARVATALDKL 33 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (413)
|++++..|.+||.+-..++..+.+.....+.||
T Consensus 54 L~Rk~DKl~~ele~l~~~l~~~k~~F~~~~~~~ 86 (93)
T 3sjb_C 54 NNRKLDSLDKEINNLKDEIQSENKAFQAHLHKL 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666665555554
No 52
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=20.42 E-value=1.1e+02 Score=23.31 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=20.5
Q ss_pred HHHHHHhhhhhhHHHHHHHHhHHHH
Q 015101 11 DLAQAHRQVHISEARVATALDKLAY 35 (413)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (413)
.+..++.+++.+...+...|..++.
T Consensus 57 ay~~~~~~W~~~a~~l~~~L~~i~~ 81 (103)
T 4i0x_B 57 AYSQAHKEWMDAARELVEGLSQMEE 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888888888888888888877
No 53
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=20.34 E-value=1.2e+02 Score=23.47 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHH
Q 015101 3 KELAELQEDLAQAHRQVHISEARVA 27 (413)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (413)
.+|..+++.|..|...+..++.+.+
T Consensus 58 ~eld~~ee~L~ea~~kLee~ek~~~ 82 (101)
T 3u1c_A 58 DSRDQVLEELHKSEDSLLFAEENAA 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555444
Done!