BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015102
(413 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 17/224 (7%)
Query: 18 ILAAKSPFFYKLFSNGMKESEQRHVALRINASEEA----ALMELLNFMYSNTLSTTAAPA 73
+LAA + +F L S ES V +R +SE + ++ +MY+ + + +
Sbjct: 71 VLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTG-S 129
Query: 74 LLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQY 133
+ +VL AD+F + +C L+ ++ L + + D R+
Sbjct: 130 VHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIH-SLAHMYTLSQLALKAADMIRRN 188
Query: 134 LASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERRE 193
+D +E LP + LS ++ + SE+ +++ VLKW + R E RE
Sbjct: 189 FHKVIQD-----EEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQ----RNAEERE 239
Query: 194 VLGSRLARFIRFPHMTCRKLKKVLTCNDF--DHDVASKLVLEAL 235
L + +R M L + + +++V KLV +A+
Sbjct: 240 RYFEELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADAV 283
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Query: 2 DCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFM 61
DC V + ILAA+SP F +F + M+ES++ V IN E E++ F+
Sbjct: 176 DCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRV--EINDVEPEVFKEMMCFI 233
Query: 62 YSNTLSTTAAPAL----LDVLMAADKFEVASCMRYCSR-LLRNMPMTPESALLYL 111
Y T AP L D+L AADK+ + C L N+ + + +L L
Sbjct: 234 Y-----TGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILIL 283
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Query: 2 DCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFM 61
DC V + ILAA+SP F +F + M+ES++ V IN E E++ F+
Sbjct: 27 DCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRV--EINDVEPEVFKEMMCFI 84
Query: 62 YSNTLSTTAAPAL----LDVLMAADKFEVASCMRYC-SRLLRNMPMTPESALLYL 111
Y T AP L D+L AADK+ + C L N+ + + +L L
Sbjct: 85 Y-----TGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILIL 134
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 23/227 (10%)
Query: 18 ILAAKSPFFYKLFSNGMKESEQRHVALRINASEEA----ALMELLNFMYSNTLSTTAAPA 73
+LAA + +F L S ES V R +SE + ++ + Y+ + + +
Sbjct: 53 VLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEPGPEPDTVEAVIEYXYTGRIRVSTG-S 111
Query: 74 LLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQY 133
+ +VL AD+F + +C L+ ++ L + + D R+
Sbjct: 112 VHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIH-SLAHXYTLSQLALKAADXIRRN 170
Query: 134 LASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERRE 193
+D +E LP + LS ++ + SE+ +++ VLKW + R E RE
Sbjct: 171 FHKVIQD-----EEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQ----RNAEERE 221
Query: 194 VLGSRLARFIRF----PHMTCRKLK-KVLTCNDFDHDVASKLVLEAL 235
L + +R P R +K + L N+ +V KLV +A+
Sbjct: 222 RYFEELFKLLRLSQXKPTYLTRHVKPERLVANN---EVCVKLVADAV 265
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 3 CSTVVRVKTLHISS--PILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNF 60
C V+ V+ + +LAA S +F KLF++G +Q + ++E AL L++F
Sbjct: 36 CDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAE--ALTALMDF 93
Query: 61 MYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLL 97
Y+ TL+ + A + D+L AA E+ + C+ LL
Sbjct: 94 AYTATLTVSTA-NVGDILSAARLLEIPAVSHVCADLL 129
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 3 CSTVVRVKTLHISS--PILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNF 60
C V+ V+ + +LAA S +F KLF++G +Q + ++E AL L++F
Sbjct: 26 CDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAE--ALTALMDF 83
Query: 61 MYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLL 97
Y+ TL+ + A + D+L AA E+ + C+ LL
Sbjct: 84 AYTATLTVSTA-NVGDILSAARLLEIPAVSHVCADLL 119
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 2 DCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFM 61
DC V + ILAA+SP F F + +ES++ V IN E E F+
Sbjct: 36 DCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKKNRV--EINDVEPEVFKEXXCFI 93
Query: 62 YS 63
Y+
Sbjct: 94 YT 95
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 32.3 bits (72), Expect = 0.54, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 2 DCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFM 61
DC+ VV +LAA S +F LF +Q+ V + ++ S A L ++L FM
Sbjct: 29 DCTFVVDGVHFKAHKAVLAACSEYFKMLF------VDQKDV-VHLDISNAAGLGQVLEFM 81
Query: 62 YSNTLSTTAAPALLDVLMAADKF 84
Y+ LS + P +D ++A F
Sbjct: 82 YTAKLSLS--PENVDDVLAVATF 102
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 2 DCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFM 61
DC+ VV +LAA S +F LF +Q+ V + ++ S A L ++L FM
Sbjct: 27 DCTFVVDGVHFKAHKAVLAACSEYFKMLF------VDQKDV-VHLDISNAAGLGQVLEFM 79
Query: 62 YSNTLSTTAAPALLDVLMAADKF 84
Y+ LS + P +D ++A F
Sbjct: 80 YTAKLSLS--PENVDDVLAVATF 100
>pdb|4DIU|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or94
Length = 248
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 150 ALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMT 209
+P+ G+ + + + I SE+ +Y+ VL++AR R + E + + +F + P +T
Sbjct: 105 TVPIEGIVTMCAP--MYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMLT 162
Query: 210 CRKLKKVL 217
+ L++++
Sbjct: 163 LKALQELI 170
>pdb|1TQH|A Chain A, Covalent Reaction Intermediate Revealed In Crystal
Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est30
Length = 247
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 150 ALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMT 209
+P+ G+ + + + I SE+ +Y+ VL++AR R + E + + +F + P T
Sbjct: 106 TVPIEGIVTMCAP--MYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKT 163
Query: 210 CRKLKKVL 217
+ L++++
Sbjct: 164 LKALQELI 171
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 29.3 bits (64), Expect = 3.9, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 2 DCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFM 61
D + +V + IL+A S +F++LFS + E + I A E+LN++
Sbjct: 35 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQVVELSFIRAEIFA-------EILNYI 87
Query: 62 YSNTLSTTAAPALLDVLMAADKF 84
YS+ + + LLD L+ + +
Sbjct: 88 YSSKIVRVRSD-LLDELIKSGQL 109
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 29.3 bits (64), Expect = 4.6, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 2 DCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFM 61
D + +V + IL+A S +F++LFS + E + I A E+LN++
Sbjct: 33 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQVVELSFIRAEIFA-------EILNYI 85
Query: 62 YSNTLSTTAAPALLDVLMAADKF 84
YS+ + + LLD L+ + +
Sbjct: 86 YSSKIVRVRSD-LLDELIKSGQL 107
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 2 DCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINAS-EEAALMELLNF 60
D S VV+ +LAA S +F LF+N R + + A+ + + ++L+F
Sbjct: 35 DVSVVVKGHAFKAHRAVLAASSSYFRDLFNN------SRSAVVELPAAVQPQSFQQILSF 88
Query: 61 MYSNTLSTTAAPALLDVLMAADKF 84
Y+ LS D+LM F
Sbjct: 89 CYTGRLSMNVGDQ--DLLMYTAGF 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,880,167
Number of Sequences: 62578
Number of extensions: 409166
Number of successful extensions: 1099
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1094
Number of HSP's gapped (non-prelim): 15
length of query: 413
length of database: 14,973,337
effective HSP length: 101
effective length of query: 312
effective length of database: 8,652,959
effective search space: 2699723208
effective search space used: 2699723208
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)