Query 015103
Match_columns 413
No_of_seqs 536 out of 3459
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 03:08:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015103.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015103hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1764 5'-AMP-activated prote 100.0 1.5E-35 3.3E-40 288.9 26.6 303 74-411 55-359 (381)
2 COG2524 Predicted transcriptio 99.8 5.4E-18 1.2E-22 150.9 12.9 122 271-413 172-293 (294)
3 COG2524 Predicted transcriptio 99.7 4.2E-16 9.1E-21 138.9 11.9 120 181-328 172-291 (294)
4 COG3448 CBS-domain-containing 99.7 1.3E-15 2.9E-20 138.0 14.5 171 132-328 201-372 (382)
5 cd04641 CBS_pair_28 The CBS do 99.7 3.4E-15 7.3E-20 123.1 14.9 119 280-409 2-120 (120)
6 COG3448 CBS-domain-containing 99.6 1.5E-15 3.2E-20 137.8 10.6 126 272-411 246-372 (382)
7 COG3620 Predicted transcriptio 99.6 2.6E-15 5.7E-20 124.2 11.1 120 272-412 66-185 (187)
8 cd04603 CBS_pair_KefB_assoc Th 99.6 3.2E-14 6.9E-19 115.7 12.9 110 280-409 2-111 (111)
9 cd04619 CBS_pair_6 The CBS dom 99.6 5.5E-14 1.2E-18 114.8 13.9 111 281-408 3-113 (114)
10 cd04618 CBS_pair_5 The CBS dom 99.6 2.6E-14 5.7E-19 113.7 11.4 95 280-409 2-98 (98)
11 cd04630 CBS_pair_17 The CBS do 99.5 1.5E-13 3.2E-18 112.1 14.2 112 280-409 2-114 (114)
12 PRK10892 D-arabinose 5-phospha 99.5 9E-14 1.9E-18 135.1 14.4 120 271-409 202-323 (326)
13 cd04608 CBS_pair_PALP_assoc Th 99.5 5.5E-14 1.2E-18 116.8 11.0 113 280-410 3-124 (124)
14 cd04617 CBS_pair_4 The CBS dom 99.5 1.8E-13 3.9E-18 112.4 14.0 111 280-408 2-117 (118)
15 cd04618 CBS_pair_5 The CBS dom 99.5 8.2E-14 1.8E-18 110.9 11.4 97 95-241 1-97 (98)
16 cd04593 CBS_pair_EriC_assoc_ba 99.5 2.4E-13 5.2E-18 111.0 14.3 112 280-409 2-115 (115)
17 cd04600 CBS_pair_HPP_assoc Thi 99.5 2.3E-13 5E-18 112.5 13.7 117 279-409 2-124 (124)
18 cd04623 CBS_pair_10 The CBS do 99.5 4.5E-13 9.7E-18 108.6 14.8 112 280-409 2-113 (113)
19 PRK11543 gutQ D-arabinose 5-ph 99.5 1.8E-13 3.8E-18 132.8 14.2 120 271-409 197-318 (321)
20 cd04614 CBS_pair_1 The CBS dom 99.5 1.9E-13 4.1E-18 108.3 11.7 95 280-409 2-96 (96)
21 COG3620 Predicted transcriptio 99.5 2.4E-13 5.2E-18 112.7 11.4 119 182-328 66-184 (187)
22 cd04629 CBS_pair_16 The CBS do 99.5 4.2E-13 9.2E-18 109.1 12.8 113 280-409 2-114 (114)
23 cd04642 CBS_pair_29 The CBS do 99.5 3.6E-13 7.9E-18 111.9 12.4 121 280-408 2-125 (126)
24 cd04605 CBS_pair_MET2_assoc Th 99.5 1.1E-12 2.5E-17 105.9 14.9 108 279-408 2-109 (110)
25 cd04801 CBS_pair_M50_like This 99.5 4.5E-13 9.7E-18 109.2 12.4 111 280-408 2-113 (114)
26 cd04643 CBS_pair_30 The CBS do 99.5 7.5E-13 1.6E-17 107.9 13.8 114 280-409 2-116 (116)
27 cd04803 CBS_pair_15 The CBS do 99.5 7.2E-13 1.6E-17 109.1 13.6 116 280-409 2-122 (122)
28 cd04639 CBS_pair_26 The CBS do 99.5 6.6E-13 1.4E-17 107.5 13.1 110 280-409 2-111 (111)
29 cd04624 CBS_pair_11 The CBS do 99.5 1.1E-12 2.4E-17 106.3 14.5 110 280-408 2-111 (112)
30 TIGR00400 mgtE Mg2+ transporte 99.5 2.7E-13 5.8E-18 137.0 13.2 172 178-409 128-304 (449)
31 cd04631 CBS_pair_18 The CBS do 99.5 5.9E-13 1.3E-17 110.2 13.1 116 280-409 2-125 (125)
32 cd04641 CBS_pair_28 The CBS do 99.5 8E-13 1.7E-17 108.8 13.7 119 189-325 1-119 (120)
33 cd04627 CBS_pair_14 The CBS do 99.5 6.6E-13 1.4E-17 109.8 13.3 119 280-407 2-121 (123)
34 cd04607 CBS_pair_NTP_transfera 99.5 1E-12 2.2E-17 106.9 14.0 109 281-408 4-112 (113)
35 cd04582 CBS_pair_ABC_OpuCA_ass 99.5 8.9E-13 1.9E-17 105.8 13.5 105 280-409 2-106 (106)
36 cd04626 CBS_pair_13 The CBS do 99.5 1E-12 2.2E-17 106.4 13.9 109 280-408 2-110 (111)
37 cd04596 CBS_pair_DRTGG_assoc T 99.5 6.5E-13 1.4E-17 107.2 12.5 105 280-408 3-107 (108)
38 cd04632 CBS_pair_19 The CBS do 99.5 1E-12 2.3E-17 109.3 14.1 117 280-409 2-128 (128)
39 cd04613 CBS_pair_SpoIVFB_EriC_ 99.5 1.2E-12 2.6E-17 106.2 13.8 112 280-409 2-114 (114)
40 cd04621 CBS_pair_8 The CBS dom 99.5 1.2E-12 2.7E-17 110.4 14.3 115 280-409 2-135 (135)
41 cd04615 CBS_pair_2 The CBS dom 99.5 1.5E-12 3.2E-17 105.7 14.2 110 281-408 3-112 (113)
42 cd04635 CBS_pair_22 The CBS do 99.5 7.8E-13 1.7E-17 109.0 12.5 116 280-409 2-122 (122)
43 cd04636 CBS_pair_23 The CBS do 99.5 1.2E-12 2.5E-17 109.8 13.8 126 280-409 2-132 (132)
44 PRK15094 magnesium/cobalt effl 99.5 7.6E-13 1.6E-17 125.9 13.9 120 272-412 68-190 (292)
45 PRK14869 putative manganese-de 99.5 2.3E-12 4.9E-17 133.8 18.5 195 185-410 72-303 (546)
46 PRK05567 inosine 5'-monophosph 99.5 3.5E-12 7.5E-17 130.0 19.4 221 120-409 41-265 (486)
47 PRK07807 inosine 5-monophospha 99.5 8.4E-13 1.8E-17 133.0 14.1 116 272-411 90-205 (479)
48 cd04586 CBS_pair_BON_assoc Thi 99.5 1.2E-12 2.6E-17 110.2 12.8 116 279-409 2-135 (135)
49 cd04640 CBS_pair_27 The CBS do 99.5 1.4E-12 3.1E-17 108.4 13.0 115 280-408 2-125 (126)
50 cd04603 CBS_pair_KefB_assoc Th 99.4 1.4E-12 2.9E-17 106.0 12.6 109 190-325 2-110 (111)
51 cd04588 CBS_pair_CAP-ED_DUF294 99.4 2.5E-12 5.4E-17 103.9 14.0 108 280-408 2-109 (110)
52 COG2905 Predicted signal-trans 99.4 5.4E-13 1.2E-17 131.4 11.7 121 271-411 149-270 (610)
53 cd04627 CBS_pair_14 The CBS do 99.4 2E-12 4.4E-17 106.9 13.5 120 190-324 2-121 (123)
54 cd04590 CBS_pair_CorC_HlyC_ass 99.4 2.8E-12 6.1E-17 103.7 13.9 108 280-408 2-110 (111)
55 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 2.5E-12 5.4E-17 103.9 13.5 110 280-409 2-111 (111)
56 cd04619 CBS_pair_6 The CBS dom 99.4 2.4E-12 5.1E-17 105.0 13.3 111 191-325 3-113 (114)
57 cd04604 CBS_pair_KpsF_GutQ_ass 99.4 2.3E-12 5.1E-17 104.6 13.3 112 280-409 3-114 (114)
58 cd04633 CBS_pair_20 The CBS do 99.4 1.9E-12 4E-17 106.5 12.8 114 280-409 2-121 (121)
59 PRK14869 putative manganese-de 99.4 7.2E-13 1.6E-17 137.5 12.4 284 85-409 68-391 (546)
60 cd04589 CBS_pair_CAP-ED_DUF294 99.4 4E-12 8.6E-17 102.9 14.2 110 280-409 2-111 (111)
61 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 4.2E-12 9.2E-17 102.2 14.2 106 280-408 3-108 (109)
62 cd04595 CBS_pair_DHH_polyA_Pol 99.4 4.3E-12 9.4E-17 102.5 14.3 108 279-408 2-109 (110)
63 cd04800 CBS_pair_CAP-ED_DUF294 99.4 3.9E-12 8.4E-17 102.9 14.0 109 280-408 2-110 (111)
64 PRK07807 inosine 5-monophospha 99.4 8.6E-12 1.9E-16 125.7 19.5 206 119-396 43-251 (479)
65 cd04620 CBS_pair_7 The CBS dom 99.4 3.4E-12 7.3E-17 104.0 13.7 111 280-409 2-115 (115)
66 cd04587 CBS_pair_CAP-ED_DUF294 99.4 2.6E-12 5.7E-17 104.2 13.0 111 280-408 2-112 (113)
67 cd04600 CBS_pair_HPP_assoc Thi 99.4 2.6E-12 5.6E-17 106.1 13.0 122 189-325 2-123 (124)
68 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 4.6E-12 9.9E-17 102.3 14.1 109 280-408 2-110 (111)
69 cd04617 CBS_pair_4 The CBS dom 99.4 2.3E-12 4.9E-17 105.8 12.3 111 190-325 2-117 (118)
70 cd04585 CBS_pair_ACT_assoc2 Th 99.4 3.3E-12 7.1E-17 104.8 13.3 115 280-409 2-122 (122)
71 cd04625 CBS_pair_12 The CBS do 99.4 5.8E-12 1.3E-16 102.1 14.3 111 280-409 2-112 (112)
72 PRK01862 putative voltage-gate 99.4 2.5E-12 5.3E-17 134.2 14.3 123 272-411 448-571 (574)
73 cd04630 CBS_pair_17 The CBS do 99.4 6.3E-12 1.4E-16 102.4 13.9 112 190-325 2-113 (114)
74 cd04606 CBS_pair_Mg_transporte 99.4 2.6E-12 5.7E-17 103.8 11.4 103 284-410 2-109 (109)
75 TIGR03520 GldE gliding motilit 99.4 4.2E-12 9E-17 126.5 14.5 118 272-412 192-312 (408)
76 cd04622 CBS_pair_9 The CBS dom 99.4 7.6E-12 1.6E-16 101.4 13.6 111 280-409 2-113 (113)
77 cd04802 CBS_pair_3 The CBS dom 99.4 1.1E-11 2.5E-16 100.3 14.4 110 280-408 2-111 (112)
78 TIGR01303 IMP_DH_rel_1 IMP deh 99.4 2.4E-11 5.2E-16 122.4 19.8 159 120-329 43-204 (475)
79 cd04637 CBS_pair_24 The CBS do 99.4 6.3E-12 1.4E-16 103.6 12.8 115 280-409 2-122 (122)
80 cd04602 CBS_pair_IMPDH_2 This 99.4 9.3E-12 2E-16 101.4 13.6 106 280-408 3-113 (114)
81 cd04609 CBS_pair_PALP_assoc2 T 99.4 9.1E-12 2E-16 100.3 13.0 109 280-409 2-110 (110)
82 cd04599 CBS_pair_GGDEF_assoc2 99.4 1E-11 2.2E-16 99.3 13.0 103 280-408 2-104 (105)
83 cd04610 CBS_pair_ParBc_assoc T 99.4 8.7E-12 1.9E-16 100.1 12.5 105 280-409 3-107 (107)
84 cd04601 CBS_pair_IMPDH This cd 99.4 6.9E-12 1.5E-16 101.1 11.9 106 280-408 3-109 (110)
85 cd04584 CBS_pair_ACT_assoc Thi 99.4 1.3E-11 2.7E-16 101.4 13.5 115 280-409 2-121 (121)
86 KOG1764 5'-AMP-activated prote 99.4 4.3E-11 9.3E-16 117.4 19.3 196 97-329 164-360 (381)
87 cd04623 CBS_pair_10 The CBS do 99.4 1.6E-11 3.5E-16 99.4 13.8 111 190-325 2-112 (113)
88 cd04605 CBS_pair_MET2_assoc Th 99.4 1.8E-11 3.8E-16 98.8 13.7 108 189-325 2-109 (110)
89 cd04614 CBS_pair_1 The CBS dom 99.4 1.5E-11 3.2E-16 97.4 12.8 94 190-325 2-95 (96)
90 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 1.6E-11 3.5E-16 98.4 13.3 104 190-325 2-105 (106)
91 cd04594 CBS_pair_EriC_assoc_ar 99.4 1.3E-11 2.9E-16 98.8 12.5 100 282-408 4-103 (104)
92 cd02205 CBS_pair The CBS domai 99.4 2.2E-11 4.8E-16 97.7 13.7 112 280-409 2-113 (113)
93 cd04639 CBS_pair_26 The CBS do 99.4 1.5E-11 3.2E-16 99.5 12.7 109 190-325 2-110 (111)
94 cd04803 CBS_pair_15 The CBS do 99.4 1.3E-11 2.8E-16 101.7 12.4 120 190-325 2-121 (122)
95 cd04642 CBS_pair_29 The CBS do 99.4 1.5E-11 3.2E-16 102.2 12.8 123 190-325 2-125 (126)
96 cd04607 CBS_pair_NTP_transfera 99.4 2.2E-11 4.7E-16 99.0 13.6 110 190-325 3-112 (113)
97 cd04801 CBS_pair_M50_like This 99.3 1.3E-11 2.7E-16 100.5 11.9 109 190-325 2-113 (114)
98 cd04596 CBS_pair_DRTGG_assoc T 99.3 1.8E-11 3.8E-16 98.7 12.5 105 190-325 3-107 (108)
99 cd04608 CBS_pair_PALP_assoc Th 99.3 6.5E-12 1.4E-16 104.3 10.1 113 189-326 2-123 (124)
100 PRK07107 inosine 5-monophospha 99.3 1E-11 2.2E-16 126.0 13.2 107 281-409 107-218 (502)
101 COG0517 FOG: CBS domain [Gener 99.3 3.5E-11 7.6E-16 98.1 14.1 111 277-407 5-117 (117)
102 cd04643 CBS_pair_30 The CBS do 99.3 1.7E-11 3.8E-16 99.8 12.3 114 190-325 2-115 (116)
103 cd04624 CBS_pair_11 The CBS do 99.3 3.2E-11 7E-16 97.6 13.7 110 190-325 2-111 (112)
104 cd04593 CBS_pair_EriC_assoc_ba 99.3 2.9E-11 6.2E-16 98.6 13.5 111 190-325 2-114 (115)
105 PRK11543 gutQ D-arabinose 5-ph 99.3 1E-11 2.2E-16 120.5 12.4 118 183-326 199-318 (321)
106 PLN02274 inosine-5'-monophosph 99.3 2E-11 4.3E-16 124.0 14.7 111 277-410 106-221 (505)
107 TIGR00393 kpsF KpsF/GutQ famil 99.3 1.3E-11 2.9E-16 116.5 12.6 113 271-402 155-268 (268)
108 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 1.4E-11 3.1E-16 124.1 13.4 114 273-411 90-203 (475)
109 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 3.3E-11 7.1E-16 97.8 13.0 111 190-325 3-113 (114)
110 TIGR01302 IMP_dehydrog inosine 99.3 1.8E-11 4E-16 123.4 14.0 114 274-410 83-200 (450)
111 cd04634 CBS_pair_21 The CBS do 99.3 4.1E-11 9E-16 102.0 14.0 126 280-408 2-142 (143)
112 cd04631 CBS_pair_18 The CBS do 99.3 3.4E-11 7.3E-16 99.5 12.8 123 190-325 2-124 (125)
113 TIGR00400 mgtE Mg2+ transporte 99.3 1.7E-11 3.6E-16 123.9 13.0 117 271-411 131-252 (449)
114 COG4109 Predicted transcriptio 99.3 1.1E-11 2.3E-16 115.6 10.4 116 271-410 188-305 (432)
115 cd04598 CBS_pair_GGDEF_assoc T 99.3 4.6E-11 1E-15 97.8 13.4 113 280-408 2-118 (119)
116 PRK05567 inosine 5'-monophosph 99.3 2.5E-11 5.4E-16 123.7 14.0 116 272-410 88-204 (486)
117 cd04591 CBS_pair_EriC_assoc_eu 99.3 4.2E-11 9.1E-16 96.3 12.5 100 280-409 3-105 (105)
118 cd04629 CBS_pair_16 The CBS do 99.3 2.8E-11 6.1E-16 98.2 11.6 112 190-325 2-113 (114)
119 cd04626 CBS_pair_13 The CBS do 99.3 4E-11 8.7E-16 97.0 12.4 109 190-325 2-110 (111)
120 PRK10892 D-arabinose 5-phospha 99.3 2E-11 4.3E-16 118.7 12.3 117 183-326 204-323 (326)
121 cd04615 CBS_pair_2 The CBS dom 99.3 5.8E-11 1.3E-15 96.3 13.2 111 190-325 2-112 (113)
122 cd04585 CBS_pair_ACT_assoc2 Th 99.3 5.7E-11 1.2E-15 97.4 13.3 120 190-325 2-121 (122)
123 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 6E-11 1.3E-15 95.4 13.0 106 190-325 3-108 (109)
124 cd04590 CBS_pair_CorC_HlyC_ass 99.3 6.3E-11 1.4E-15 95.7 13.0 109 190-325 2-110 (111)
125 cd04636 CBS_pair_23 The CBS do 99.3 4.8E-11 1E-15 100.0 12.4 125 190-325 2-131 (132)
126 cd04586 CBS_pair_BON_assoc Thi 99.3 3.2E-11 7E-16 101.4 11.4 130 189-325 2-134 (135)
127 cd04620 CBS_pair_7 The CBS dom 99.3 7E-11 1.5E-15 96.2 13.0 110 190-325 2-114 (115)
128 cd04588 CBS_pair_CAP-ED_DUF294 99.3 9.4E-11 2E-15 94.6 13.7 108 190-325 2-109 (110)
129 cd04621 CBS_pair_8 The CBS dom 99.3 6.2E-11 1.3E-15 100.0 13.0 129 190-325 2-134 (135)
130 cd04638 CBS_pair_25 The CBS do 99.3 1E-10 2.2E-15 93.8 13.3 104 280-408 2-105 (106)
131 cd04613 CBS_pair_SpoIVFB_EriC_ 99.3 8E-11 1.7E-15 95.4 12.6 111 190-325 2-113 (114)
132 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 1.2E-10 2.7E-15 93.8 13.6 109 190-325 2-110 (111)
133 cd04800 CBS_pair_CAP-ED_DUF294 99.3 8.7E-11 1.9E-15 94.9 12.7 109 190-325 2-110 (111)
134 cd04595 CBS_pair_DHH_polyA_Pol 99.3 1.1E-10 2.5E-15 94.1 13.3 108 189-325 2-109 (110)
135 COG0517 FOG: CBS domain [Gener 99.3 1.4E-10 3.1E-15 94.4 13.5 112 186-324 4-117 (117)
136 cd04602 CBS_pair_IMPDH_2 This 99.3 1.1E-10 2.5E-15 95.0 12.7 109 190-325 3-113 (114)
137 TIGR01137 cysta_beta cystathio 99.3 8.1E-11 1.8E-15 119.6 14.5 118 272-410 336-453 (454)
138 cd04587 CBS_pair_CAP-ED_DUF294 99.3 1.6E-10 3.5E-15 93.6 13.4 111 190-325 2-112 (113)
139 cd04632 CBS_pair_19 The CBS do 99.2 1.2E-10 2.5E-15 96.9 12.8 124 190-325 2-127 (128)
140 cd04625 CBS_pair_12 The CBS do 99.2 1.7E-10 3.7E-15 93.3 13.4 110 190-325 2-111 (112)
141 TIGR01302 IMP_dehydrog inosine 99.2 2.8E-10 6.1E-15 114.8 17.9 165 119-328 33-201 (450)
142 PTZ00314 inosine-5'-monophosph 99.2 6.3E-11 1.4E-15 120.4 13.2 113 275-410 100-217 (495)
143 cd04599 CBS_pair_GGDEF_assoc2 99.2 1.4E-10 3E-15 92.6 12.5 102 190-324 2-103 (105)
144 PRK15094 magnesium/cobalt effl 99.2 3E-10 6.4E-15 108.2 16.8 164 82-297 64-227 (292)
145 cd04633 CBS_pair_20 The CBS do 99.2 1E-10 2.3E-15 96.0 12.0 119 190-325 2-120 (121)
146 COG2905 Predicted signal-trans 99.2 4.4E-11 9.4E-16 118.1 11.2 120 183-328 151-270 (610)
147 COG2239 MgtE Mg/Co/Ni transpor 99.2 9.5E-11 2E-15 116.4 13.7 122 177-329 128-254 (451)
148 PRK07107 inosine 5-monophospha 99.2 1.2E-10 2.5E-15 118.2 14.6 111 191-327 107-219 (502)
149 cd04635 CBS_pair_22 The CBS do 99.2 1.1E-10 2.4E-15 96.0 11.9 120 190-325 2-121 (122)
150 cd04622 CBS_pair_9 The CBS dom 99.2 2E-10 4.4E-15 93.0 13.1 111 190-325 2-112 (113)
151 cd04637 CBS_pair_24 The CBS do 99.2 1.8E-10 3.9E-15 94.8 13.0 120 190-325 2-121 (122)
152 PTZ00314 inosine-5'-monophosph 99.2 3.2E-10 7E-15 115.2 17.3 115 186-327 101-217 (495)
153 cd04802 CBS_pair_3 The CBS dom 99.2 2.7E-10 5.9E-15 92.2 13.6 110 190-325 2-111 (112)
154 cd04640 CBS_pair_27 The CBS do 99.2 8.3E-11 1.8E-15 97.7 10.8 115 190-325 2-125 (126)
155 cd04606 CBS_pair_Mg_transporte 99.2 1.2E-10 2.5E-15 94.0 11.3 102 194-326 2-108 (109)
156 cd04612 CBS_pair_SpoIVFB_EriC_ 99.2 2.8E-10 6.2E-15 91.7 13.3 109 190-325 2-110 (111)
157 TIGR03520 GldE gliding motilit 99.2 3.9E-10 8.6E-15 112.4 16.9 161 83-298 189-349 (408)
158 cd04601 CBS_pair_IMPDH This cd 99.2 1.6E-10 3.5E-15 93.0 11.7 107 189-325 2-109 (110)
159 cd04610 CBS_pair_ParBc_assoc T 99.2 3E-10 6.4E-15 91.1 13.0 105 189-325 2-106 (107)
160 PLN02274 inosine-5'-monophosph 99.2 1.9E-10 4E-15 117.0 14.5 115 187-328 106-222 (505)
161 cd02205 CBS_pair The CBS domai 99.2 4.8E-10 1E-14 89.8 13.8 111 190-325 2-112 (113)
162 cd04589 CBS_pair_CAP-ED_DUF294 99.2 4.1E-10 8.8E-15 91.0 12.9 109 190-325 2-110 (111)
163 cd04609 CBS_pair_PALP_assoc2 T 99.2 4.4E-10 9.6E-15 90.3 12.2 108 190-325 2-109 (110)
164 PRK01862 putative voltage-gate 99.2 2.1E-10 4.7E-15 119.7 12.7 120 184-328 450-571 (574)
165 PRK11573 hypothetical protein; 99.2 4.3E-10 9.3E-15 112.1 14.2 122 272-412 188-312 (413)
166 cd04584 CBS_pair_ACT_assoc Thi 99.2 5.5E-10 1.2E-14 91.6 12.4 119 190-325 2-120 (121)
167 cd04592 CBS_pair_EriC_assoc_eu 99.2 4.4E-10 9.5E-15 94.6 11.7 109 280-392 2-117 (133)
168 cd04594 CBS_pair_EriC_assoc_ar 99.2 6.8E-10 1.5E-14 88.8 12.3 100 192-325 4-103 (104)
169 TIGR00393 kpsF KpsF/GutQ famil 99.1 3.7E-10 8.1E-15 106.6 11.2 110 184-319 158-268 (268)
170 COG4109 Predicted transcriptio 99.1 3.7E-10 8E-15 105.4 10.6 115 183-328 190-306 (432)
171 cd04634 CBS_pair_21 The CBS do 99.1 1.1E-09 2.3E-14 93.3 12.6 126 190-325 2-142 (143)
172 cd04591 CBS_pair_EriC_assoc_eu 99.1 1.2E-09 2.7E-14 87.7 11.9 102 190-325 3-104 (105)
173 cd04638 CBS_pair_25 The CBS do 99.1 3.2E-09 7E-14 85.0 12.6 104 190-325 2-105 (106)
174 COG1253 TlyC Hemolysins and re 99.1 1.7E-09 3.8E-14 108.7 13.4 120 272-412 207-329 (429)
175 cd04598 CBS_pair_GGDEF_assoc T 99.0 2.6E-09 5.7E-14 87.3 11.2 113 190-325 2-118 (119)
176 cd04592 CBS_pair_EriC_assoc_eu 99.0 4.3E-09 9.4E-14 88.5 11.3 114 190-311 2-118 (133)
177 PRK11573 hypothetical protein; 99.0 2.7E-08 5.8E-13 99.4 17.8 165 83-297 185-349 (413)
178 TIGR01137 cysta_beta cystathio 99.0 4.8E-09 1E-13 106.7 12.6 116 184-327 338-453 (454)
179 COG2239 MgtE Mg/Co/Ni transpor 99.0 3.8E-09 8.3E-14 105.1 10.8 116 271-410 132-252 (451)
180 PF00571 CBS: CBS domain CBS d 98.9 2.5E-09 5.4E-14 75.7 6.6 54 358-412 4-57 (57)
181 cd02859 AMPKbeta_GBD_like AMP- 98.9 7.1E-10 1.5E-14 84.2 3.1 31 1-31 49-79 (79)
182 PF00571 CBS: CBS domain CBS d 98.9 4.7E-09 1E-13 74.3 6.7 55 274-328 2-56 (57)
183 COG4536 CorB Putative Mg2+ and 98.8 3.2E-08 7E-13 93.6 10.3 121 272-412 201-325 (423)
184 COG4535 CorC Putative Mg2+ and 98.7 3.5E-08 7.6E-13 87.6 7.7 120 273-413 69-191 (293)
185 TIGR01186 proV glycine betaine 98.7 3.8E-07 8.1E-12 89.5 14.1 110 279-412 250-359 (363)
186 COG1253 TlyC Hemolysins and re 98.7 9.1E-07 2E-11 89.1 16.8 129 83-248 204-332 (429)
187 KOG2550 IMP dehydrogenase/GMP 98.6 8.8E-07 1.9E-11 84.7 13.9 169 113-326 55-226 (503)
188 PRK10070 glycine betaine trans 98.6 7.2E-07 1.6E-11 88.6 13.5 105 284-412 290-394 (400)
189 KOG0474 Cl- channel CLC-7 and 98.5 2.3E-07 5.1E-12 92.8 8.3 148 261-409 565-745 (762)
190 COG4536 CorB Putative Mg2+ and 98.5 2.1E-06 4.6E-11 81.5 13.4 149 65-248 164-328 (423)
191 TIGR01186 proV glycine betaine 98.5 3.5E-06 7.6E-11 82.7 14.1 110 189-329 250-359 (363)
192 KOG2550 IMP dehydrogenase/GMP 98.4 4.3E-07 9.4E-12 86.7 7.3 107 280-409 117-226 (503)
193 PRK10070 glycine betaine trans 98.2 1.4E-05 3E-10 79.5 13.1 104 194-328 290-393 (400)
194 KOG1616 Protein involved in Sn 98.2 5.6E-07 1.2E-11 85.1 2.8 34 2-36 131-164 (289)
195 COG4535 CorC Putative Mg2+ and 98.1 2.5E-05 5.4E-10 69.8 10.7 126 84-246 66-191 (293)
196 KOG0474 Cl- channel CLC-7 and 98.1 9.2E-06 2E-10 81.7 8.0 143 183-326 584-745 (762)
197 cd04597 CBS_pair_DRTGG_assoc2 98.0 1.5E-05 3.2E-10 64.8 6.2 54 272-325 59-112 (113)
198 smart00116 CBS Domain in cysta 97.9 3.7E-05 8.1E-10 51.0 5.9 47 363-410 2-48 (49)
199 cd04597 CBS_pair_DRTGG_assoc2 97.8 4.6E-05 1E-09 61.9 6.4 50 358-408 63-112 (113)
200 cd02861 E_set_proteins_like E 97.8 1.4E-05 3E-10 61.1 2.9 30 1-30 50-81 (82)
201 smart00116 CBS Domain in cysta 97.7 0.00014 2.9E-09 48.2 6.2 47 281-327 2-48 (49)
202 KOG0475 Cl- channel CLC-3 and 97.5 0.0007 1.5E-08 68.6 11.1 127 281-410 558-694 (696)
203 COG4175 ProV ABC-type proline/ 97.3 0.0024 5.1E-08 60.3 10.4 164 187-412 214-384 (386)
204 KOG0475 Cl- channel CLC-3 and 97.1 0.0077 1.7E-07 61.3 12.7 133 190-327 557-694 (696)
205 TIGR03415 ABC_choXWV_ATP choli 96.8 0.0058 1.2E-07 60.5 8.5 107 272-412 275-381 (382)
206 KOG0476 Cl- channel CLC-2 and 96.4 0.022 4.7E-07 59.3 10.2 60 184-247 591-650 (931)
207 COG1125 OpuBA ABC-type proline 94.2 0.44 9.5E-06 44.1 9.7 117 188-325 186-307 (309)
208 COG1125 OpuBA ABC-type proline 94.1 0.53 1.1E-05 43.6 10.0 113 279-409 187-308 (309)
209 COG4175 ProV ABC-type proline/ 94.0 0.097 2.1E-06 49.7 5.4 90 199-328 294-383 (386)
210 TIGR03415 ABC_choXWV_ATP choli 90.8 0.55 1.2E-05 46.6 6.2 48 279-328 333-380 (382)
211 KOG0476 Cl- channel CLC-2 and 87.4 0.8 1.7E-05 48.2 4.7 62 268-329 585-648 (931)
212 cd02688 E_set E or "early" set 85.2 0.46 9.9E-06 35.4 1.3 28 1-28 54-81 (83)
213 cd02858 Esterase_N_term Estera 85.2 0.78 1.7E-05 35.0 2.6 28 2-29 56-83 (85)
214 KOG2118 Predicted membrane pro 65.7 7.4 0.00016 40.1 4.1 116 273-409 206-326 (498)
215 PRK11388 DNA-binding transcrip 64.4 21 0.00046 38.0 7.5 97 290-403 61-163 (638)
216 PF01378 IgG_binding_B: B doma 60.7 3.1 6.8E-05 28.0 0.2 11 6-16 38-48 (55)
217 PRK11388 DNA-binding transcrip 46.5 93 0.002 33.2 8.7 99 202-319 63-162 (638)
218 PF05198 IF3_N: Translation in 44.4 51 0.0011 24.5 4.5 29 302-330 12-40 (76)
219 PF05198 IF3_N: Translation in 38.7 62 0.0013 24.0 4.2 25 384-409 12-36 (76)
220 KOG2118 Predicted membrane pro 34.1 95 0.0021 32.1 6.1 130 78-243 197-327 (498)
221 COG2216 KdpB High-affinity K+ 28.8 78 0.0017 32.6 4.3 37 370-408 413-449 (681)
222 smart00107 BTK Bruton's tyrosi 28.1 28 0.00061 21.9 0.7 11 3-13 11-21 (36)
223 COG1559 Aminodeoxychorismate l 26.3 6.2E+02 0.014 24.8 11.8 144 190-383 46-191 (342)
224 PF11447 DUF3201: Protein of u 25.8 40 0.00087 27.9 1.4 9 4-12 37-45 (150)
225 PF08272 Topo_Zn_Ribbon: Topoi 25.2 16 0.00034 23.9 -0.8 10 3-12 30-39 (42)
226 cd02852 Isoamylase_N_term Isoa 25.1 40 0.00088 27.1 1.4 14 1-14 63-76 (119)
227 PF14827 Cache_3: Sensory doma 23.0 84 0.0018 25.1 2.9 16 304-319 93-108 (116)
228 cd02856 Glycogen_debranching_e 21.9 48 0.001 25.9 1.2 10 1-10 59-68 (103)
229 PF14416 PMR5N: PMR5 N termina 21.5 72 0.0016 22.1 1.8 18 6-23 7-24 (55)
No 1
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=100.00 E-value=1.5e-35 Score=288.86 Aligned_cols=303 Identities=30% Similarity=0.543 Sum_probs=257.5
Q ss_pred HHHHHHHHhhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCC
Q 015103 74 SRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN 153 (413)
Q Consensus 74 ~~~~~~~fl~~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~ 153 (413)
....+..|++.++||+++|.+++++++|..+++++||++|..++.+++|+||....+|+|++++.||+.++...+..+..
T Consensus 55 ~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~ 134 (381)
T KOG1764|consen 55 AVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSS 134 (381)
T ss_pred hhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999888764221
Q ss_pred C-CHHHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEE
Q 015103 154 L-TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY 232 (413)
Q Consensus 154 l-~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~G 232 (413)
. ..+.+++..+..|++...... ....++++.+.|..++.++...+.+++++++||.| .+.| .+.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d--~~~~---~v~~ 200 (381)
T KOG1764|consen 135 LDNIEVLEDSQLSKRREVECLLK---------ETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVID--PETG---EVLY 200 (381)
T ss_pred HHHHhhhhhhhccccchhhhhhc---------cccCCCceeecCcHHHHHHHHHHHhCCccceeeec--cccc---ceee
Confidence 1 223344444455554422211 12344559999999999999999999999999996 3456 8999
Q ss_pred EeehhhHHHHHHhhccCCCCCcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCC
Q 015103 233 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND 312 (413)
Q Consensus 233 ivt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g 312 (413)
++|++.|++++..+.+..+ ....+..++.++.+|+|. .+..+..++++.+|+++|..++++++||||+.|
T Consensus 201 ilt~~rIl~~l~~~~~~~~-~~~~l~~s~~dl~ig~~~---------~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g 270 (381)
T KOG1764|consen 201 ILTQRRILKFLWLNGRLLP-LPSLLSKSLSDLGIGTWS---------NIASISEDTPVIEALKIMSERRISALPVVDENG 270 (381)
T ss_pred ehhHHHHHHHHHHhhcccc-cHHHhhCCHHHhCcchhh---------hheeecCCCcHHHHHHHHHhcCcCcceEEcCCC
Confidence 9999999999998877655 457789999999999996 688999999999999999999999999999999
Q ss_pred cEEEEEeHHHHHHHHhhhhhhhcccCccc-HHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEe
Q 015103 313 SLLDIYSRSDITALAKDKAYAQIHLDEMN-IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE 391 (413)
Q Consensus 313 ~lvGiit~~dl~~~~~~~~~~~~~l~~~~-v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd 391 (413)
+.+|+++..|+..+...+.|.... .+ +++++..+. .-...+++|.+++||.+++++|..+++||+||||
T Consensus 271 ~~v~~~s~~Dv~~l~~~~~~~~~~---~~~l~~~~~~~~-------~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd 340 (381)
T KOG1764|consen 271 KKVGNYSRFDVIHLAREGTYNNLD---LSCLSEALSHRP-------IRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVD 340 (381)
T ss_pred ceecceehhhhhhhhhcCccCccc---hhHHHHHhhhcc-------cccCccEEEeecchHHHHHHHHHhcCceEEEEEc
Confidence 999999999999998887776654 45 777765432 2234589999999999999999999999999999
Q ss_pred CCCCeEEEEEehHHHHHHhh
Q 015103 392 AGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 392 ~~~~~liGvIS~~DIl~~l~ 411 (413)
++|+++|+||++||+.++.
T Consensus 341 -~~~~l~GvvSLsDil~~l~ 359 (381)
T KOG1764|consen 341 -EDGVLVGVISLSDILSYLV 359 (381)
T ss_pred -CCCcEEEEeeHHHHHHHHH
Confidence 5899999999999999985
No 2
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.76 E-value=5.4e-18 Score=150.93 Aligned_cols=122 Identities=18% Similarity=0.381 Sum_probs=111.5
Q ss_pred ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCC
Q 015103 271 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ 350 (413)
Q Consensus 271 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~ 350 (413)
.+++++|+++++++.+++++.+|.++|.+++++..||+|+ ++++|++|.+|+..+..++.+ +..|++
T Consensus 172 ~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~~------~~kV~~------ 238 (294)
T COG2524 172 EKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGNL------DAKVSD------ 238 (294)
T ss_pred chhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCCc------cccHHH------
Confidence 4677899999999999999999999999999999999985 599999999999998887643 356777
Q ss_pred CCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhcC
Q 015103 351 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV 413 (413)
Q Consensus 351 ~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~~ 413 (413)
+|.+.++++..++.+.+|++.|..+++.||.|+| .+|+++|+||++||++.|.++
T Consensus 239 -------~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~d-s~gkpvGiITrTDIL~~ia~~ 293 (294)
T COG2524 239 -------YMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTD-SNGKPVGIITRTDILTRIAGL 293 (294)
T ss_pred -------HhccCCceEcCchhHHHHHHHHHhcCcceEEEEc-cCCcEEEEEehHHHHHHhhcc
Confidence 7888999999999999999999999999999999 589999999999999998764
No 3
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.67 E-value=4.2e-16 Score=138.92 Aligned_cols=120 Identities=19% Similarity=0.328 Sum_probs=106.7
Q ss_pred CCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccc
Q 015103 181 DGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 260 (413)
Q Consensus 181 ~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~ 260 (413)
..++..|+++++++.+++|+.+|+++|.+++++..||+|+ + +++|++|.+||...+...
T Consensus 172 ~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~----d---k~vGiit~~dI~~aia~g-------------- 230 (294)
T COG2524 172 EKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD----D---KIVGIITLSDIAKAIANG-------------- 230 (294)
T ss_pred chhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC----C---ceEEEEEHHHHHHHHHcC--------------
Confidence 3456689999999999999999999999999999999975 3 799999999999976542
Q ss_pred ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 261 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 261 i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
....+|+++|+++++++..++.+.||+++|..+++.++.|+|.+|+++|++|+.|++..+.
T Consensus 231 -------~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 231 -------NLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred -------CccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 2234677889999999999999999999999999999999999999999999999998543
No 4
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.67 E-value=1.3e-15 Score=138.03 Aligned_cols=171 Identities=17% Similarity=0.267 Sum_probs=129.7
Q ss_pred EEEeehHHHHHHHHHhccCCCCCCHHHHhhccHHH-HHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhC
Q 015103 132 VGVLSALDFILILRELGTNGSNLTEEELETHTISA-WKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN 210 (413)
Q Consensus 132 vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~ 210 (413)
+| ++.+|+-..|.++... -+.+.++++...-+. .+...+. ...-...++|+++++++.+++++.+|.++|.++
T Consensus 201 vg-fs~~Dld~aL~~~~E~-lDIdrddLe~llr~~elqa~~R~----~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H 274 (382)
T COG3448 201 VG-FSSEDLDAALQRLGET-LDIDRDDLERLLRETELQALRRR----MGELTCADIMSRDVVTVSTDTSIDHARKLLQEH 274 (382)
T ss_pred cC-CCHHHHHHHHHhcCce-ecCCHHHHHHHHHHHHHHHHHHH----hccccHHHhcCccceecCCcCChHHHHHHHHHc
Confidence 34 5788999999887543 234567776643221 1111111 122334568999999999999999999999999
Q ss_pred CccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccccccccccCCCCceEecCCCCH
Q 015103 211 KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASL 290 (413)
Q Consensus 211 ~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l 290 (413)
+++.+||+|+ .. +++|++|++|+++.. +. ..-+.+..+ ..++++.+|+.++.++.++++.
T Consensus 275 ~ikaLPV~d~---~~---rl~GiVt~~dl~~~a----~~------~p~qrlr~~----~~~~vk~imt~~v~tv~pdtpa 334 (382)
T COG3448 275 RIKALPVLDE---HR---RLVGIVTQRDLLKHA----RP------SPFQRLRFL----RPPTVKGIMTTPVVTVRPDTPA 334 (382)
T ss_pred Cccccccccc---cc---ceeeeeeHHHHhhcc----Cc------chHHHhhcc----CCCcccccccCcceeecCCCcH
Confidence 9999999975 33 899999999998722 11 011112211 2357888999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 291 GSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 291 ~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
.+.+-++.+.+.+++||+|++|+++|++|..|++..+.
T Consensus 335 ~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~ 372 (382)
T COG3448 335 VELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALY 372 (382)
T ss_pred HHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHH
Confidence 99999999999999999999999999999999998554
No 5
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.66 E-value=3.4e-15 Score=123.08 Aligned_cols=119 Identities=39% Similarity=0.659 Sum_probs=95.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++.+|++.+...+..... ..++.+.+.... .|
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~---~~~~~~~~~~~~-------~~ 71 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNL---DLTVGEALERRS-------QD 71 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccc---cCCHHHHHhhcc-------cC
Confidence 56789999999999999999999999999989999999999999986543322111 123443221111 34
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
..++.++.+++++.++++.|.+++.+++||+| ++|+++|+||++|++++
T Consensus 72 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~~~~~Givt~~di~~~ 120 (120)
T cd04641 72 FEGVRTCSPDDCLRTIFDLIVKARVHRLVVVD-ENKRVEGIISLSDILQF 120 (120)
T ss_pred CCCCeEEcCCCcHHHHHHHHHhcCccEEEEEC-CCCCEEEEEEHHHhhcC
Confidence 45688999999999999999999999999999 57999999999999864
No 6
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.63 E-value=1.5e-15 Score=137.81 Aligned_cols=126 Identities=18% Similarity=0.377 Sum_probs=108.3
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 351 (413)
Q Consensus 272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~ 351 (413)
+..++|+++++++..++++.+|.++|.+++++++||+|++.+++|+++++|+.+-..-..+.++. ..+
T Consensus 246 tcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr-----------~~~- 313 (382)
T COG3448 246 TCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLR-----------FLR- 313 (382)
T ss_pred cHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhh-----------ccC-
Confidence 56788999999999999999999999999999999999999999999999998854433332221 111
Q ss_pred CCCCcc-cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 352 ANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 352 ~~~~~~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
...++ +|++++.++.++++..+.+-++.+.+.|.+||+| +.|+++||||.+|++.++.
T Consensus 314 -~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld-~~g~lvGIvsQtDliaal~ 372 (382)
T COG3448 314 -PPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD-AAGKLVGIVSQTDLIAALY 372 (382)
T ss_pred -CCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc-CCCcEEEEeeHHHHHHHHH
Confidence 11233 8999999999999999999999999999999999 6999999999999998875
No 7
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.63 E-value=2.6e-15 Score=124.24 Aligned_cols=120 Identities=18% Similarity=0.385 Sum_probs=102.3
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 351 (413)
Q Consensus 272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~ 351 (413)
+++.+|..+++.+.+++++.+++++|.+++++.+||+++ |+++|-||..++.++..++.. .+.+.++++
T Consensus 66 ta~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e---~i~~~~vr~------- 134 (187)
T COG3620 66 TAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGME---SIRSLRVRE------- 134 (187)
T ss_pred eHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhcccc---chhhhhHHH-------
Confidence 455679999999999999999999999999999999984 999999999999997654421 122456665
Q ss_pred CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+|+.++++++++.++..+..++..++. +.|++ +|+++||||+.||++.+.+
T Consensus 135 ------vM~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e--~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 135 ------VMGEPFPTVSPDESLNVISQLLEEHPA--VLVVE--NGKVVGIITKADIMKLLAG 185 (187)
T ss_pred ------HhcCCCCcCCCCCCHHHHHHHHhhCCe--EEEEe--CCceEEEEeHHHHHHHHhc
Confidence 788899999999999999998888765 77776 6999999999999998865
No 8
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.58 E-value=3.2e-14 Score=115.67 Aligned_cols=110 Identities=12% Similarity=0.269 Sum_probs=92.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+.+.... .. .+.++.+ +|
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~-~~-----~~~~v~~-------------~~ 62 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPN-DY-----ETLKVCE-------------VY 62 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccc-cc-----cccChhh-------------ee
Confidence 35678999999999999999999999999988999999999999874221 10 1123444 55
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
..++.++.+++++.+|+++|.+++.+++||+| ++|+++|+||.+|++++
T Consensus 63 ~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd-~~~~~~Giit~~di~~~ 111 (111)
T cd04603 63 IVPVPIVYCDSKVTDLLRIFRETEPPVVAVVD-KEGKLVGTIYERELLRF 111 (111)
T ss_pred ecCCcEECCCCcHHHHHHHHHHcCCCeEEEEc-CCCeEEEEEEhHHhhcC
Confidence 56788999999999999999999999999999 57999999999999863
No 9
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.57 E-value=5.5e-14 Score=114.75 Aligned_cols=111 Identities=16% Similarity=0.301 Sum_probs=93.4
Q ss_pred ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccCC
Q 015103 281 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG 360 (413)
Q Consensus 281 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~ 360 (413)
+.++.+++++.+|++.|.+++...+||+|++|+++|+++..|+.+......... .+.++.+ +|.
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~---~~~~v~~-------------~~~ 66 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPG---CTAPVEN-------------VMT 66 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCc---ccCCHHH-------------Hhc
Confidence 567899999999999999999999999999999999999999987543211011 1245655 455
Q ss_pred CcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 361 QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 361 ~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
.++.++.+++++.++++.|.+++.+++||+| ++|+++|+||++|+++
T Consensus 67 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 67 RAVVSCRPGDLLHDVWQVMKQRGLKNIPVVD-ENARPLGVLNARDALK 113 (114)
T ss_pred CCCeeECCCCCHHHHHHHHHHcCCCeEEEEC-CCCcEEEEEEhHhhcc
Confidence 5788999999999999999999999999999 5789999999999975
No 10
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.57 E-value=2.6e-14 Score=113.69 Aligned_cols=95 Identities=15% Similarity=0.255 Sum_probs=84.8
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 358 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 358 (413)
.++++.+++++.+|.+.|.+++++++||+|++ |+++|++|..|+.+...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------------ 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------------ 51 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------------
Confidence 36789999999999999999999999999974 89999999999876221
Q ss_pred CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCC-CeEEEEEehHHHHHH
Q 015103 359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFRF 409 (413)
Q Consensus 359 m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~-~~liGvIS~~DIl~~ 409 (413)
+.++.+++++.+|++.|.+++++++||+| ++ |+++|+||.+|++++
T Consensus 52 ----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~~~giit~~d~~~~ 98 (98)
T cd04618 52 ----LVSIHPERSLFDAALLLLKNKIHRLPVID-PSTGTGLYILTSRRILKF 98 (98)
T ss_pred ----eEEeCCCCcHHHHHHHHHHCCCCEeeEEE-CCCCCceEEeehhhhhcC
Confidence 45789999999999999999999999999 46 899999999999863
No 11
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=1.5e-13 Score=112.07 Aligned_cols=112 Identities=21% Similarity=0.259 Sum_probs=93.4
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 358 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 358 (413)
++.++.+++++.++++.|.+++.+.+||+|++ |+++|+++..|+++.+..+.. ...+.++.+ +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~-------------~ 65 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR---DPDRVNVYE-------------I 65 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC---CCCccCHHH-------------H
Confidence 46789999999999999999999999999987 899999999999885432211 111235555 4
Q ss_pred CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 359 m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
|..++.++++++++.++++.|.+.+.+.+||+| + |+++|+||+.|++++
T Consensus 66 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~-~~~~Gvi~~~dl~~~ 114 (114)
T cd04630 66 MTKPLISVSPDMDIKYCARLMERTNIRRAPVVE-N-NELIGIISLTDIFLA 114 (114)
T ss_pred hcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee-C-CEEEEEEEHHHhhcC
Confidence 555788999999999999999999999999999 4 999999999999863
No 12
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.54 E-value=9e-14 Score=135.12 Aligned_cols=120 Identities=15% Similarity=0.221 Sum_probs=103.0
Q ss_pred ccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103 271 PRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 348 (413)
Q Consensus 271 ~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~ 348 (413)
.+++++|.+ +++++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|+.+....+. .+.+.++.+
T Consensus 202 ~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~----~~~~~~v~~---- 273 (326)
T PRK10892 202 LRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGI----DLRQASIAD---- 273 (326)
T ss_pred CcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCC----CcccCCHHH----
Confidence 467888987 8999999999999999999999888888998999999999999987544221 122345665
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
+|.+++.++.+++++.+|++.|.+++++++||+| +|+++|+||++||+++
T Consensus 274 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~~ 323 (326)
T PRK10892 274 ---------VMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLRA 323 (326)
T ss_pred ---------hcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHhc
Confidence 6777899999999999999999999999999998 4899999999999975
No 13
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.54 E-value=5.5e-14 Score=116.83 Aligned_cols=113 Identities=14% Similarity=0.225 Sum_probs=93.7
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++.+++++.++++.|.+++++.+||+|++|+++|+++..+++.....+... . +.++.+ +|
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~-~---~~~v~~-------------im 65 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQ-P---SDPVSK-------------AL 65 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccC-C---CCcHHH-------------Hh
Confidence 577899999999999999999999999999889999999999998754432211 1 346666 66
Q ss_pred CCcceEEeCCCCHHHHHHHHh---------cCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103 360 GQRCQMCLRSDPLHKVMERLA---------NPGVRRLVIVEAGSKRVEGIISLSDVFRFL 410 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~---------~~~~~~l~VVd~~~~~liGvIS~~DIl~~l 410 (413)
.+++.++.+++++.++.+.|. +.+.+++||+| ++|+++|+||.+||++++
T Consensus 66 ~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 66 YKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKE-KQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred hccceecCCCCCHHHHHhhcccCCceEEEeccccccccccc-cccceEEEEehhHhhhhC
Confidence 778999999999999999653 34678888998 579999999999999875
No 14
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.54 E-value=1.8e-13 Score=112.40 Aligned_cols=111 Identities=22% Similarity=0.319 Sum_probs=92.4
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++.+++++.+|++.|.+++.+++||+|++|+++|+++..|+.+....+. .+.+.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~----~~~~~~~~~-------------~~ 64 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA----DLQKVPVGV-------------IM 64 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC----CccCCCHHH-------------Hh
Confidence 5678999999999999999999999999998899999999999988553211 111344555 33
Q ss_pred CC--cceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCC---CeEEEEEehHHHHH
Q 015103 360 GQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS---KRVEGIISLSDVFR 408 (413)
Q Consensus 360 ~~--~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~---~~liGvIS~~DIl~ 408 (413)
.+ ++.++.+++++.+++++|.+++++.+||+|+ + |+++|+||++||++
T Consensus 65 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 65 TRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEK-VDEGLEVIGRITKTNITK 117 (118)
T ss_pred CCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeC-CCccceEEEEEEhhheec
Confidence 32 5789999999999999999999999999994 5 79999999999875
No 15
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.54 E-value=8.2e-14 Score=110.85 Aligned_cols=97 Identities=45% Similarity=0.751 Sum_probs=85.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhhccHHHHHHHHHhh
Q 015103 95 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 174 (413)
Q Consensus 95 ~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~ 174 (413)
+++++++.+.|+.+|++.|.++++.++||+|+++++++|++|..|+..++.
T Consensus 1 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~----------------------------- 51 (98)
T cd04618 1 SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR----------------------------- 51 (98)
T ss_pred CeEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-----------------------------
Confidence 368999999999999999999999999999986678999999999874211
Q ss_pred hccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHH
Q 015103 175 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 241 (413)
Q Consensus 175 ~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~ 241 (413)
++++.+++++.+|+++|.+++++++||++++ +| +++|++|.+|+++
T Consensus 52 ----------------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~---~~~giit~~d~~~ 97 (98)
T cd04618 52 ----------------LVSIHPERSLFDAALLLLKNKIHRLPVIDPS--TG---TGLYILTSRRILK 97 (98)
T ss_pred ----------------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECC--CC---CceEEeehhhhhc
Confidence 5689999999999999999999999999752 35 8999999999975
No 16
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.53 E-value=2.4e-13 Score=110.96 Aligned_cols=112 Identities=20% Similarity=0.345 Sum_probs=93.4
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.....++... ...++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~----~~~~~~~-------------~~ 64 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAG----EPSAVDE-------------VA 64 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccccc----ccccHHH-------------hc
Confidence 466889999999999999999999999999889999999999998855432110 0123444 45
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCC--CeEEEEEehHHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS--KRVEGIISLSDVFRF 409 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~--~~liGvIS~~DIl~~ 409 (413)
..++.+|.+++++.++++.|.+++.+++||+| ++ |+++|+||.+||+++
T Consensus 65 ~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd-~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 65 TPPLLTVHPDEPLAHALDRMASRGLRQLPVVD-RGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred cCCceEECCCCCHHHHHHHHHHcCCceeeEEe-CCCCCeEEEEEEhHHhhcC
Confidence 56788999999999999999999999999999 45 799999999999864
No 17
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.52 E-value=2.3e-13 Score=112.46 Aligned_cols=117 Identities=21% Similarity=0.370 Sum_probs=95.0
Q ss_pred CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhc------ccCcccHHHHHhcCCCC
Q 015103 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI------HLDEMNIHQALQLGQDA 352 (413)
Q Consensus 279 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~------~l~~~~v~~~l~~~~~~ 352 (413)
+++.++.+++++.++++.|.+.+++++||++++|+++|+++..+++........... .....++.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~-------- 73 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGD-------- 73 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHH--------
Confidence 467889999999999999999999999999988999999999999875542211000 000122333
Q ss_pred CCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 353 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 353 ~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
+|..++.++.+++++.++++.|.+.+.+++||+| ++|+++|+||..|++++
T Consensus 74 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-~~g~~~Gvit~~di~~~ 124 (124)
T cd04600 74 -----IMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVD-EDRRLVGIVTQTDLIAA 124 (124)
T ss_pred -----hccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEc-CCCCEEEEEEhHHhhcC
Confidence 5666889999999999999999999999999999 58999999999999864
No 18
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=4.5e-13 Score=108.56 Aligned_cols=112 Identities=21% Similarity=0.404 Sum_probs=93.5
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++.++.++.++++.|.+++++.+||+|++++++|+++..|++.......... ...++.+ +|
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~---~~~~~~~-------------~~ 65 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASA---LDTPVSE-------------IM 65 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCc---cccCHHH-------------hc
Confidence 4667899999999999999999999999998899999999999988554321110 1234555 45
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
..++.++.+++++.++++.|.+.+.+++||++ + |+++|+||..||+++
T Consensus 66 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~ 113 (113)
T cd04623 66 TRNVITVTPDDTVDEAMALMTERRFRHLPVVD-G-GKLVGIVSIGDVVKA 113 (113)
T ss_pred CCCcEEECCCCcHHHHHHHHHHcCCCEeEEEe-C-CEEEEEEEHHHhhcC
Confidence 56788999999999999999999999999999 4 899999999999864
No 19
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.52 E-value=1.8e-13 Score=132.80 Aligned_cols=120 Identities=13% Similarity=0.182 Sum_probs=103.6
Q ss_pred ccccccCCCC--ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103 271 PRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 348 (413)
Q Consensus 271 ~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~ 348 (413)
.+++++|.++ +.++++++++.+|++.|.+++...+||+|++|+++|+++..|+.+....+... +.++.+
T Consensus 197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~-----~~~v~~---- 267 (321)
T PRK11543 197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGAL-----TTPVNE---- 267 (321)
T ss_pred hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCCc-----CCcHHH----
Confidence 3678889988 99999999999999999999999999999999999999999998755422110 234555
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
+|.+++.++.+++++.+|++.|.+++..++|||| ++|+++|+||+.||+++
T Consensus 268 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 268 ---------AMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVD-ENGKLTGAINLQDFYQA 318 (321)
T ss_pred ---------hcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHhc
Confidence 6667888999999999999999999999999999 57899999999999975
No 20
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.51 E-value=1.9e-13 Score=108.26 Aligned_cols=95 Identities=16% Similarity=0.368 Sum_probs=85.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
+++++.+++++.+|++.|.+++++.+||+|++|+++|+++.+|+....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~-------------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS-------------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC--------------------------------
Confidence 567899999999999999999999999999889999999999997621
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
.+.++.+++++.++++.|.+++.+++||+| ++|+++|+||++||+++
T Consensus 50 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~~~~Giit~~di~~~ 96 (96)
T cd04614 50 --EVVTATKRTTVSECAQKMKRNRIEQIPIIN-GNDKLIGLLRDHDLLKP 96 (96)
T ss_pred --CcEEecCCCCHHHHHHHHHHhCCCeeeEEC-CCCcEEEEEEHHHhhcC
Confidence 145889999999999999999999999999 47899999999999864
No 21
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.50 E-value=2.4e-13 Score=112.73 Aligned_cols=119 Identities=23% Similarity=0.420 Sum_probs=99.8
Q ss_pred CCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccc
Q 015103 182 GNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV 261 (413)
Q Consensus 182 ~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i 261 (413)
.+..+|..+++++.|++++.+|+++|.+++++.+||+++ + +++|-+|..+|.+.+.... ..+
T Consensus 66 ta~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~----~---k~VGsItE~~iv~~~le~~-----------e~i 127 (187)
T COG3620 66 TAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE----D---KVVGSITENDIVRALLEGM-----------ESI 127 (187)
T ss_pred eHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC----C---eeeeeecHHHHHHHHhccc-----------cch
Confidence 345689999999999999999999999999999999964 3 8999999999999664321 112
Q ss_pred cccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 262 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 262 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
.+ .+++++|..+++++++++++..+-+++..+ .++.|+ ++|+++|+||+.|++++..
T Consensus 128 ~~-------~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~-e~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 128 RS-------LRVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVV-ENGKVVGIITKADIMKLLA 184 (187)
T ss_pred hh-------hhHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEE-eCCceEEEEeHHHHHHHHh
Confidence 22 367888999999999999998888888654 578888 5899999999999999765
No 22
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=4.2e-13 Score=109.06 Aligned_cols=113 Identities=20% Similarity=0.293 Sum_probs=93.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..++++.+....+... .+.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~--~~~~v~~-------------~~ 66 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCD--GVATVRD-------------IM 66 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccC--CCccHHH-------------Hh
Confidence 46788999999999999998899999999988999999999999875543221110 1234555 44
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
..++.++.+++++.++++.|.+++.+++||+| + |+++|+||..||+++
T Consensus 67 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~ 114 (114)
T cd04629 67 TTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD-D-GKLVGQISRRDVLRA 114 (114)
T ss_pred ccCceEECCCCcHHHHHHHHHHhCCCccCEEE-C-CEEEEEEEHHHHhcC
Confidence 55788999999999999999999999999999 4 899999999999864
No 23
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=3.6e-13 Score=111.94 Aligned_cols=121 Identities=21% Similarity=0.327 Sum_probs=92.8
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHH---HHHhcCCCCCCCc
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH---QALQLGQDANPSL 356 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~---~~l~~~~~~~~~~ 356 (413)
.+.++.+++++.++++.|.+++++++||+|++|+++|+++..|+++....+..... .+.. +...... ...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~ 74 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLL----YRTITFKELSEKFT---DSD 74 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhc----ccchhhhhhhhhcc---ccc
Confidence 46789999999999999999999999999988999999999999886542211100 0000 0000000 001
Q ss_pred ccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 357 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 357 ~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
..+..++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||.+||++
T Consensus 75 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVD-EEGKPIGVITLTDIIS 125 (126)
T ss_pred ccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEEC-CCCCEEEEEEHHHHhc
Confidence 14566789999999999999999999999999999 5799999999999985
No 24
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.49 E-value=1.1e-12 Score=105.89 Aligned_cols=108 Identities=20% Similarity=0.430 Sum_probs=92.5
Q ss_pred CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 358 (413)
Q Consensus 279 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 358 (413)
+++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..+++.....+. .++.+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~--------~~~~~-------------~ 60 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDK--------KSVED-------------I 60 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCc--------cCHHH-------------h
Confidence 35778999999999999999999999999998899999999999987544221 12444 4
Q ss_pred CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 359 m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
|..++.++.+++++.++++.|.+++.+.+||++ ++|+++|+||+.|+++
T Consensus 61 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~G~v~~~di~~ 109 (110)
T cd04605 61 MTRNVITATPDEPIDVAARKMERHNISALPVVD-AENRVIGIITSEDISK 109 (110)
T ss_pred cCCCCeEECCCCcHHHHHHHHHHhCCCEEeEEC-CCCcEEEEEEHHHhhh
Confidence 455788999999999999999999999999999 5799999999999975
No 25
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.49 E-value=4.5e-13 Score=109.17 Aligned_cols=111 Identities=22% Similarity=0.348 Sum_probs=89.9
Q ss_pred CceEecCCCCHHHHHHHHHhCC-CCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103 280 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 358 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 358 (413)
++.++++++++.+|++.|.+++ .+.+||+|++|+++|+++..|++........ +.++.+++..
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~------~~~v~~~~~~---------- 65 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQWA------QTTVIQVMTP---------- 65 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhcc------ccchhhhhcc----------
Confidence 4678899999999999997765 8899999988999999999999886542211 2345553221
Q ss_pred CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 359 m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
..+++++.+++++.+|++.|.+++.+++||+| ++|+++|+||..||++
T Consensus 66 -~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~-~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 66 -AAKLVTVLSEESLAEVLKLLEEQGLDELAVVE-DSGQVIGLITEADLLR 113 (114)
T ss_pred -cccceEECCCCcHHHHHHHHHHCCCCeeEEEc-CCCcEEEEEeccceec
Confidence 01356899999999999999999999999999 4789999999999875
No 26
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=7.5e-13 Score=107.94 Aligned_cols=114 Identities=18% Similarity=0.292 Sum_probs=91.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhc-ccCcccHHHHHhcCCCCCCCccc
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-HLDEMNIHQALQLGQDANPSLGF 358 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~-~l~~~~v~~~l~~~~~~~~~~~~ 358 (413)
.++++.+++++.++++.|.+++++.+||+|++|+++|+++..|+.+.......... .+.+.++.+ +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~-------------~ 68 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVID-------------V 68 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHH-------------H
Confidence 46789999999999999999999999999988999999999999886542211110 000234444 4
Q ss_pred CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 359 m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
|..++.++.+++++.++++.|.+.+ .+||+| ++|+++|+||..|++++
T Consensus 69 ~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~-~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 69 MNTDVPVIIDDADIEEILHLLIDQP--FLPVVD-DDGIFIGIITRREILKA 116 (116)
T ss_pred hcCCCceecCCCCHHHHHHHHhcCC--ceeEEe-CCCeEEEEEEHHHhhcC
Confidence 5567889999999999999998865 489999 58999999999999864
No 27
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=7.2e-13 Score=109.14 Aligned_cols=116 Identities=19% Similarity=0.323 Sum_probs=94.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhc-----ccCcccHHHHHhcCCCCCC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-----HLDEMNIHQALQLGQDANP 354 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~-----~l~~~~v~~~l~~~~~~~~ 354 (413)
++.++.+++++.++++.|.+.+++.+||++++|+++|+++..++............ .....++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~---------- 71 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAE---------- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHH----------
Confidence 46788999999999999999999999999988999999999999885542211100 001234444
Q ss_pred CcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 355 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 355 ~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
+|..++.++.+++++.++++.|.+.+.+.+||+| ++|+++|+||..|++++
T Consensus 72 ---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~dl~~~ 122 (122)
T cd04803 72 ---VMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVD-DKGTLVGIITRSDFLRL 122 (122)
T ss_pred ---hhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEc-CCCCEEEEEEHHHhhcC
Confidence 4556788999999999999999999999999999 47899999999999864
No 28
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=6.6e-13 Score=107.47 Aligned_cols=110 Identities=21% Similarity=0.379 Sum_probs=92.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++.+++++.++++.|.+.+...+||+|++|+++|+++..++.+....... +.++.+ +|
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~------~~~v~~-------------~~ 62 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGP------DAPVRG-------------VM 62 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcCC------CCcHHH-------------Hh
Confidence 45678999999999999998899999999988999999999999886543211 234554 44
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
..++.++.+++++.++++.|.+++.+++||+| ++|+++|+||..|+.++
T Consensus 63 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~G~it~~dl~~~ 111 (111)
T cd04639 63 RRDFPTVSPSATLDAVLRLMQQGGAPAVPVVD-GSGRLVGLVTLENVGEL 111 (111)
T ss_pred cCCCcEECCCCcHHHHHHHHHhcCCceeeEEc-CCCCEEEEEEHHHhhcC
Confidence 45788999999999999999999999999999 46899999999999763
No 29
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=1.1e-12 Score=106.34 Aligned_cols=110 Identities=18% Similarity=0.355 Sum_probs=93.4
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..++++....+... +.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~~-----~~~v~~-------------~~ 63 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGIDL-----DTPVSE-------------IM 63 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCCC-----ccCHHH-------------hc
Confidence 466889999999999999999999999999889999999999998865432211 234554 45
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
..+++++..++++.++++.|.+++...+||++ ++|++.|++|+.|+++
T Consensus 64 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 64 TRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVD-KGGELVGVISIRDLVR 111 (112)
T ss_pred cCCCEEECCCCcHHHHHHHHHHcCccEEEEEc-CCCcEEEEEEHHHhcc
Confidence 56788999999999999999999999999999 5799999999999985
No 30
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.48 E-value=2.7e-13 Score=136.95 Aligned_cols=172 Identities=13% Similarity=0.146 Sum_probs=133.1
Q ss_pred ccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHh-----CCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCC
Q 015103 178 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQ-----NKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS 252 (413)
Q Consensus 178 ~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~-----~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~ 252 (413)
+..+.++++|.++++++++++|+.+|++.|.+ ++...++|+|+ .+ +++|+++.+|++.. .
T Consensus 128 ~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~---~~---~l~GvV~l~dLl~a------~--- 192 (449)
T TIGR00400 128 YSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE---SK---HLKGVLSIRDLILA------K--- 192 (449)
T ss_pred CCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC---CC---eEEEEEEHHHHhcC------C---
Confidence 67788899999999999999999999999975 45678898864 45 89999999998651 0
Q ss_pred CcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhh
Q 015103 253 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY 332 (413)
Q Consensus 253 ~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~ 332 (413)
.+ ..++++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|++|.+|++....+..
T Consensus 193 ----~~------------~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~- 255 (449)
T TIGR00400 193 ----PE------------EILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA- 255 (449)
T ss_pred ----CC------------CcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh-
Confidence 01 1345568888899999999999999999999999999999999999999999998665321
Q ss_pred hhcccCcccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 333 AQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 333 ~~~~l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
.++.+. ....+..+++++.+++..|.+++...++|.- +.|++| ..++..
T Consensus 256 ---------~ed~~~-------------~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~~-----~~~~~t-~~ii~~ 304 (449)
T TIGR00400 256 ---------TEDFYM-------------IAAVKPLDDSYFDTSILVMAKNRIIWLLVLL-----VSSTFT-ATIISN 304 (449)
T ss_pred ---------HHHHHH-------------hcCCCCCcchhhhchHHHHHHhccchHHHHH-----HHHHHH-HHHHHH
Confidence 133222 1233344578889999999999988777652 456665 545443
No 31
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=5.9e-13 Score=110.16 Aligned_cols=116 Identities=17% Similarity=0.289 Sum_probs=93.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhh-c------ccCcccHHHHHhcCCC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQ-I------HLDEMNIHQALQLGQD 351 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~-~------~l~~~~v~~~l~~~~~ 351 (413)
++.++.++.++.+++++|.+.+.+.+||+|++ |+++|+++..|+........... . .....++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 74 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRS------- 74 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHH-------
Confidence 46788999999999999999999999999987 99999999999988654322110 0 000123333
Q ss_pred CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
+|..+++++.+++++.++++.|.+.+.+.++|+| ++|+++|+||..||+++
T Consensus 75 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 75 ------IMTRNVITITPDDSIKDAAELMLEKRVGGLPVVD-DDGKLVGIVTERDLLKA 125 (125)
T ss_pred ------HhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEc-CCCcEEEEEEHHHhhcC
Confidence 4556789999999999999999999999999999 46899999999999874
No 32
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=8e-13 Score=108.82 Aligned_cols=119 Identities=22% Similarity=0.295 Sum_probs=92.4
Q ss_pred CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 268 (413)
Q Consensus 189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 268 (413)
++++++.+++++.+|++.|.+++.+++||+++ +| +++|+++.+|++.++...... ....++...
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~---~~---~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~---- 64 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVDE---NG---KVVDVYSRFDVINLAKEGAYN------NLDLTVGEA---- 64 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECC---CC---eEEEEEeHHHHHHHHhcCccc------cccCCHHHH----
Confidence 36789999999999999999999999999964 45 899999999999765322110 001111110
Q ss_pred ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
......|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|++|++.
T Consensus 65 --~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 65 --LERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred --HhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 0112235567789999999999999999999999999998899999999999875
No 33
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=6.6e-13 Score=109.82 Aligned_cols=119 Identities=20% Similarity=0.293 Sum_probs=90.8
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 358 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 358 (413)
++.++.+++++.+|++.|.+++++++||+|++ |+++|+++..|+++....+....... +......+.. ..+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~ 73 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGL-DPLYPIPLRD-------LTI 73 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccch-hhhhhhhhhh-------ccc
Confidence 56788999999999999999999999999987 99999999999988553221100000 0000000000 014
Q ss_pred CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHH
Q 015103 359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF 407 (413)
Q Consensus 359 m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl 407 (413)
|..++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||++||-
T Consensus 74 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~vGiit~~di~ 121 (123)
T cd04627 74 GTSDVISINGDQPLIDALHLMHNEGISSVAVVD-NQGNLIGNISVTDVR 121 (123)
T ss_pred CcCCceEeCCCCCHHHHHHHHHHcCCceEEEEC-CCCcEEEEEeHHHhh
Confidence 566788999999999999999999999999999 578999999999984
No 34
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.48 E-value=1e-12 Score=106.87 Aligned_cols=109 Identities=18% Similarity=0.273 Sum_probs=91.8
Q ss_pred ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccCC
Q 015103 281 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG 360 (413)
Q Consensus 281 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~ 360 (413)
+.++.+++++.++++.|.+.+...++|+|++|+++|+++.+|+......+... +.++.+ +|.
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~-----~~~v~~-------------~~~ 65 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLSL-----DDPVSE-------------VMN 65 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCCc-----CCCHHH-------------hhc
Confidence 56789999999999999999999999999889999999999998754322110 234555 444
Q ss_pred CcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 361 QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 361 ~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
.++.++.+++++.++++.|.+++.+++||+| ++|+++|+||.+||+.
T Consensus 66 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~di~~ 112 (113)
T cd04607 66 RNPITAKVGSSREEILALMRERSIRHLPILD-EEGRVVGLATLDDLLS 112 (113)
T ss_pred CCCEEEcCCCCHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEEhHHhcc
Confidence 5688999999999999999999999999999 5799999999999974
No 35
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.48 E-value=8.9e-13 Score=105.76 Aligned_cols=105 Identities=18% Similarity=0.240 Sum_probs=89.7
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++.++.++.+|++.|.+.+.+.+||+|++|+++|+++..|+..... .++.+ +|
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~-----------~~~~~-------------~~ 57 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG-----------GCCGD-------------HA 57 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc-----------cchhh-------------hc
Confidence 4668899999999999999999999999998899999999999986421 12333 44
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
.+.+.++.+++++.++++.|.+++...+||+| ++|+++|+||.+|++++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~~l~~~ 106 (106)
T cd04582 58 EPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVD-EDGRYVGEVTQRSIADY 106 (106)
T ss_pred ccCCEEECCCCCHHHHHHHHHHCCCCeeeEEC-CCCcEEEEEEHHHhhcC
Confidence 45677899999999999999999999999999 57899999999999863
No 36
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=1e-12 Score=106.43 Aligned_cols=109 Identities=17% Similarity=0.332 Sum_probs=92.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+..+...... .+.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~-------------~~ 63 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESF-----LEKKVFN-------------IV 63 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhccc-----ccCcHHH-------------Hh
Confidence 46678999999999999999999999999988999999999999875432211 1234555 44
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
.+++.++.+++++.+|++.|.+++..++||+| + |+++|+||+.||++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~di~~ 110 (111)
T cd04626 64 SQDVFYVNEEDTIDEALDIMREKQIGRLPVVD-D-NKLIGVVRTKDILD 110 (111)
T ss_pred cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEhHHhcc
Confidence 55788999999999999999999999999999 4 89999999999974
No 37
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.48 E-value=6.5e-13 Score=107.17 Aligned_cols=105 Identities=20% Similarity=0.299 Sum_probs=91.3
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..++..... +.++.+ +|
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~----------~~~v~~-------------~~ 59 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKDP----------DTTIEK-------------VM 59 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcccc----------cccHHH-------------Hh
Confidence 5678999999999999999999999999998899999999999975211 235555 44
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
..++.++.+++++.++++.|.+++.+.+||+| ++|+++|+||..|+++
T Consensus 60 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~G~it~~di~~ 107 (108)
T cd04596 60 TKNPITVNPKTSVASVAHMMIWEGIEMLPVVD-DNKKLLGIISRQDVLK 107 (108)
T ss_pred cCCCeEECCCCCHHHHHHHHHHcCCCeeeEEc-CCCCEEEEEEHHHhhc
Confidence 45688999999999999999999999999999 5899999999999986
No 38
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=1e-12 Score=109.35 Aligned_cols=117 Identities=23% Similarity=0.385 Sum_probs=92.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhh-hhc--------ccCcccHHHHHhcCC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQI--------HLDEMNIHQALQLGQ 350 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~-~~~--------~l~~~~v~~~l~~~~ 350 (413)
++.++.+++++.+|+++|.+.+.+.+||+|++|+++|+++..|+..++..... ... ...+.++.+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 75 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD------ 75 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH------
Confidence 45678999999999999999999999999988999999999999875432111 000 000122333
Q ss_pred CCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeC-CCCeEEEEEehHHHHHH
Q 015103 351 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA-GSKRVEGIISLSDVFRF 409 (413)
Q Consensus 351 ~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~-~~~~liGvIS~~DIl~~ 409 (413)
+|..+++++.+++++.++++.|.+++.+.+||++. ++|+++|+||++||+++
T Consensus 76 -------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~~ 128 (128)
T cd04632 76 -------AMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA 128 (128)
T ss_pred -------HhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence 56678899999999999999999999999999851 46899999999999864
No 39
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.47 E-value=1.2e-12 Score=106.17 Aligned_cols=112 Identities=20% Similarity=0.343 Sum_probs=94.4
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+......... ....++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~----~~~~~v~~-------------~~ 64 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSL----YDLVVASD-------------IM 64 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccc----cccEEHHH-------------hc
Confidence 56789999999999999999999999999988999999999999875543211 11245655 55
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCC-CCeEEEEEehHHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG-SKRVEGIISLSDVFRF 409 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~-~~~liGvIS~~DIl~~ 409 (413)
.+++.++.+++++.++++.|...+.+.+||+| + .|+++|++|..|++++
T Consensus 65 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~~Gvvt~~di~~~ 114 (114)
T cd04613 65 TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVD-DDPGKLLGILSRSDLLSA 114 (114)
T ss_pred cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEe-CCCCEEEEEEEhHHhhcC
Confidence 56788999999999999999999999999998 5 6899999999999863
No 40
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.47 E-value=1.2e-12 Score=110.40 Aligned_cols=115 Identities=15% Similarity=0.221 Sum_probs=92.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhc-----c--------------cCcc
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-----H--------------LDEM 340 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~-----~--------------l~~~ 340 (413)
++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+++.......... . ..+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL 81 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence 35678999999999999999999999999988999999999999986542111000 0 0011
Q ss_pred cHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 341 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 341 ~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
++.+ +|..++.++.+++++.++++.|.+++.+++||++ + |+++|+||.+||+++
T Consensus 82 ~v~~-------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~-~-~~~~Gvit~~di~~~ 135 (135)
T cd04621 82 VAED-------------IMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD-N-DNIVGVITKTDICRE 135 (135)
T ss_pred cHHH-------------hcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe-C-CEEEEEEEHHHHhhC
Confidence 2333 6667788999999999999999999999999999 4 899999999999863
No 41
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.47 E-value=1.5e-12 Score=105.75 Aligned_cols=110 Identities=20% Similarity=0.352 Sum_probs=92.1
Q ss_pred ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccCC
Q 015103 281 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG 360 (413)
Q Consensus 281 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~ 360 (413)
+.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+....+.. +.+.++.+ +|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~-------------~~~ 65 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEE----LKDAKVRE-------------VMN 65 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhh----hcCCcHHH-------------hcc
Confidence 5678999999999999999999999999988999999999999874332211 11234554 455
Q ss_pred CcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 361 QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 361 ~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
.++.++..++++.++++.|.+++.+.+||+| ++|+++|+||..|+++
T Consensus 66 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 66 SPVITIDANDSIAKARWLMSNNNISRLPVLD-DKGKVGGIVTEDDILR 112 (113)
T ss_pred CCceEECCCCcHHHHHHHHHHcCCCeeeEEC-CCCeEEEEEEHHHhhc
Confidence 5788999999999999999999999999999 5789999999999975
No 42
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=7.8e-13 Score=108.96 Aligned_cols=116 Identities=16% Similarity=0.294 Sum_probs=92.7
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhh-hhhc----ccCcccHHHHHhcCCCCCC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA-YAQI----HLDEMNIHQALQLGQDANP 354 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~-~~~~----~l~~~~v~~~l~~~~~~~~ 354 (413)
++.++.+++++.++++.|.+.+.+++||+|++|+++|+++..|++....... .... .....++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 71 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEK---------- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHH----------
Confidence 4678999999999999999999999999998899999999999987421110 0000 001223333
Q ss_pred CcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 355 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 355 ~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
+|..++.++..++++.++++.|.+++.+.+||+| ++|+++|++|+.|++++
T Consensus 72 ---~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 72 ---IMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVN-EKDQLVGIVDRHDVLKA 122 (122)
T ss_pred ---HhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEc-CCCcEEEEEEhHHhhcC
Confidence 4556788999999999999999999999999999 57999999999999864
No 43
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=1.2e-12 Score=109.78 Aligned_cols=126 Identities=16% Similarity=0.271 Sum_probs=93.0
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcc--cCcccH--HHHHhcCCCCCCC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH--LDEMNI--HQALQLGQDANPS 355 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~--l~~~~v--~~~l~~~~~~~~~ 355 (413)
++.++.+++++.++++.|.+.+++++||+|++|+++|+++..++............. ...... .+..+. ....+
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 79 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKK--LLGKK 79 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHH--HcCCC
Confidence 467899999999999999999999999999889999999999998865422110000 000000 000000 00001
Q ss_pred cc-cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 356 LG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 356 ~~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
+. +|.+++..+.+++++.++++.|.+.+.+++||+| + |+++|+||..|++++
T Consensus 80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~iGvit~~dl~~~ 132 (132)
T cd04636 80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-D-GKLVGIISRGDIIRS 132 (132)
T ss_pred HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE-C-CEEEEEEEHHHhhcC
Confidence 22 5667788999999999999999999999999999 5 999999999999874
No 44
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.46 E-value=7.6e-13 Score=125.87 Aligned_cols=120 Identities=13% Similarity=0.361 Sum_probs=100.8
Q ss_pred cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103 272 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 348 (413)
Q Consensus 272 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~ 348 (413)
+++++|.+ .+.++..++++.++++.+.+++++++||++++ ++++|+++.+|++.....+.. ..++.+
T Consensus 68 ~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~------~~~l~~---- 137 (292)
T PRK15094 68 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE------AFSMDK---- 137 (292)
T ss_pred EEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCC------cCCHHH----
Confidence 56777887 68999999999999999999999999999865 799999999999864431110 123444
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+|. ++.++++++++.++++.|.+++.+.++|+| +.|.++|+||+.||++.|+|
T Consensus 138 ---------l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD-e~G~viGiVTleDIle~ivG 190 (292)
T PRK15094 138 ---------VLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVID-EFGGVSGLVTIEDILELIVG 190 (292)
T ss_pred ---------HcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEe-CCCCEEEEeEHHHHHHHHhC
Confidence 333 455899999999999999999999999999 68899999999999999986
No 45
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.46 E-value=2.3e-12 Score=133.85 Aligned_cols=195 Identities=18% Similarity=0.181 Sum_probs=135.0
Q ss_pred CCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccc----
Q 015103 185 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP---- 260 (413)
Q Consensus 185 ~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~---- 260 (413)
++|.++++++++++++.+|++.|.+++++.+||+|+ +| +++|++|..|+.+.+....... .......+
T Consensus 72 dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~l~Givt~~di~~~~~~~~~~~--~~~~~~~t~~~i 143 (546)
T PRK14869 72 DLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDE---EG---KLLGLVSLSDLARAYMDILDPE--ILSKSPTSLENI 143 (546)
T ss_pred HhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHhhcchh--hhhhcCCCHHHH
Confidence 467889999999999999999999999999999975 45 8999999999998765432100 00000111
Q ss_pred ------------------cccccccccc-ccccccCCCC-ceEecCCCCHHHHHHHHHhCCCCEEEEEcCC---------
Q 015103 261 ------------------VSSIQLGTWV-PRIGEANGRP-FAMLRPTASLGSALALLVQADVSSIPIVDDN--------- 311 (413)
Q Consensus 261 ------------------i~~l~i~~~~-~~v~~~m~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--------- 311 (413)
...+.++... ..+.+.+.+. ++.+... .++...+.+.+++++.|+...
T Consensus 144 ~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr---~d~~~~ai~~~~~~lIlt~g~~~~~~v~~l 220 (546)
T PRK14869 144 IRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDR---EDIQLAAIEAGVRLLIITGGAPVSEDVLEL 220 (546)
T ss_pred HHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCc---HHHHHHHHHcCCCEEEECCCCCCCHHHHHH
Confidence 1111111110 1122234443 4444333 344556788899999888642
Q ss_pred ---CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccCC-CcceEEeCCCCHHHHHHHHhcCCCCEE
Q 015103 312 ---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRL 387 (413)
Q Consensus 312 ---g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~-~~~~~v~~~~sl~~~~~~m~~~~~~~l 387 (413)
..+.++.|..|.......-. ...++++ +|+ +++.++++++++.++.+.|.+++.+++
T Consensus 221 a~~~~i~ii~t~~dt~~t~~~l~------~~~~V~~-------------iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~ 281 (546)
T PRK14869 221 AKENGVTVISTPYDTFTTARLIN------QSIPVSY-------------IMTTEDLVTFSKDDYLEDVKEVMLKSRYRSY 281 (546)
T ss_pred HHhCCCeEEEecccHHHHHHHhh------cCCCHHH-------------hccCCCcEEECCCCcHHHHHHHHHhcCCCce
Confidence 24677777777666443110 0234555 777 789999999999999999999999999
Q ss_pred EEEeCCCCeEEEEEehHHHHHHh
Q 015103 388 VIVEAGSKRVEGIISLSDVFRFL 410 (413)
Q Consensus 388 ~VVd~~~~~liGvIS~~DIl~~l 410 (413)
|||| ++|+++|+||+.|+++..
T Consensus 282 PVvd-~~g~lvGiit~~dl~~~~ 303 (546)
T PRK14869 282 PVVD-EDGKVVGVISRYHLLSPV 303 (546)
T ss_pred EEEc-CCCCEEEEEEHHHhhccc
Confidence 9999 589999999999999753
No 46
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.46 E-value=3.5e-12 Score=129.98 Aligned_cols=221 Identities=17% Similarity=0.225 Sum_probs=150.0
Q ss_pred eeeceeCCCCeEEEEeehHHHHHHHHHhccCC---CCCCHHHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCC
Q 015103 120 MVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGP 196 (413)
Q Consensus 120 s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~ 196 (413)
..|+..+. .+.+|..++...+.+.+..+ .+++.++..+ ..+..+. .++.|..+++++.+
T Consensus 41 ~~Piv~a~----m~~vT~~ela~ava~~GglG~i~~~~~~e~~~~----~I~~vk~----------~~dim~~~~v~i~~ 102 (486)
T PRK05567 41 NIPLLSAA----MDTVTEARMAIAMAREGGIGVIHKNMSIEEQAE----EVRKVKR----------SESGVVTDPVTVTP 102 (486)
T ss_pred CcCEEeCC----CCCcCHHHHHHHHHhCCCCCEecCCCCHHHHHH----HHHHhhh----------hhhcccCCCeEeCC
Confidence 47888753 24468888888876655322 2233332211 1111111 12367889999999
Q ss_pred CCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccccccccccc
Q 015103 197 YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEA 276 (413)
Q Consensus 197 ~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~ 276 (413)
++++.+|+++|.+++++++||+++ .+ +++|++|.+|+.... ... ..+.++
T Consensus 103 ~~tv~ea~~~m~~~~~~~lpVvd~---~g---~lvGiVt~~DL~~~~------------~~~------------~~V~di 152 (486)
T PRK05567 103 DTTLAEALALMARYGISGVPVVDE---NG---KLVGIITNRDVRFET------------DLS------------QPVSEV 152 (486)
T ss_pred CCCHHHHHHHHHHhCCCEEEEEcc---CC---EEEEEEEHHHhhhcc------------cCC------------CcHHHH
Confidence 999999999999999999999974 45 899999999986410 011 134455
Q ss_pred CC-CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCC
Q 015103 277 NG-RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS 355 (413)
Q Consensus 277 m~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~ 355 (413)
|. ++++++.+++++.++++.|.+++++.+||+|++|+++|++|.+|++............-..+.+..
T Consensus 153 m~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~a----------- 221 (486)
T PRK05567 153 MTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGA----------- 221 (486)
T ss_pred cCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEe-----------
Confidence 76 688999999999999999999999999999999999999999999986431100000000011111
Q ss_pred cccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 356 LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 356 ~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
.| ...+ .-.+.++.|.+.+++. +++|..+|+..|+++..+.++.
T Consensus 222 --ai-----~~~~--~~~e~a~~L~~agvdv-ivvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 222 --AV-----GVGA--DNEERAEALVEAGVDV-LVVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred --ec-----ccCc--chHHHHHHHHHhCCCE-EEEECCCCcchhHHHHHHHHHh
Confidence 11 1222 2277888899999994 5777446888888877766654
No 47
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.45 E-value=8.4e-13 Score=133.02 Aligned_cols=116 Identities=15% Similarity=0.231 Sum_probs=101.1
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 351 (413)
Q Consensus 272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~ 351 (413)
++.++|.++++++.+++++.++++.|.+++++.+||+|++++++|++|.+|+.... . ..++.+
T Consensus 90 Kv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~-------~---~~~V~d------- 152 (479)
T PRK07807 90 KSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD-------R---FTQVRD------- 152 (479)
T ss_pred ccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc-------c---CCCHHH-------
Confidence 34566888999999999999999999999999999999999999999999985421 0 134555
Q ss_pred CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
+|..+++++++++++.+|++.|.+++.+++||+| ++++++|+||++||+++..
T Consensus 153 ------iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD-~~g~lvGIIT~~DIl~~~~ 205 (479)
T PRK07807 153 ------VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVD-ADGRLVGVLTRTGALRATI 205 (479)
T ss_pred ------hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEc-CCCeEEEEEEHHHHHHHhh
Confidence 6677899999999999999999999999999999 5899999999999998753
No 48
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=1.2e-12 Score=110.22 Aligned_cols=116 Identities=22% Similarity=0.365 Sum_probs=93.1
Q ss_pred CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhh------hcc------------cCcc
Q 015103 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA------QIH------------LDEM 340 (413)
Q Consensus 279 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~------~~~------------l~~~ 340 (413)
+++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+......+... ... ....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR 81 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence 3577899999999999999999999999999889999999999998754322100 000 0011
Q ss_pred cHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 341 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 341 ~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
++.+ +|..++.++.+++++.++++.|.+.+.+++||+| +|+++|+||+.|++++
T Consensus 82 ~v~~-------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~~ 135 (135)
T cd04586 82 KVAD-------------VMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLRA 135 (135)
T ss_pred CHHH-------------HhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhcC
Confidence 2222 5666789999999999999999999999999999 5899999999999864
No 49
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.4e-12 Score=108.41 Aligned_cols=115 Identities=21% Similarity=0.382 Sum_probs=87.3
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh-hhhhhh-cccCcccHHHHHhcCCCCCCCcc
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK-DKAYAQ-IHLDEMNIHQALQLGQDANPSLG 357 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~-~~~~~~-~~l~~~~v~~~l~~~~~~~~~~~ 357 (413)
++.++..++++.++++.|.+++...+||+|++|+++|+++..|+..... ...... ....+.++.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~------------- 68 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVAD------------- 68 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHH-------------
Confidence 4668899999999999999899999999998899999999999986210 000000 0111234555
Q ss_pred cCCCcceE--E----eCCCCHHHHHHHHhcCCCCEEEEEeCCC-CeEEEEEehHHHHH
Q 015103 358 FNGQRCQM--C----LRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFR 408 (413)
Q Consensus 358 ~m~~~~~~--v----~~~~sl~~~~~~m~~~~~~~l~VVd~~~-~~liGvIS~~DIl~ 408 (413)
+|.++... + .+++++.++++.|.+++.+++||+| ++ |+++|+||++||++
T Consensus 69 im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd-~~~~~~~G~it~~di~~ 125 (126)
T cd04640 69 VMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVD-REHHQIRGIISTSDIAR 125 (126)
T ss_pred hcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEE-CCCCEEEEEEeHHHHhh
Confidence 44333333 2 3689999999999999999999999 45 79999999999986
No 50
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=1.4e-12 Score=105.99 Aligned_cols=109 Identities=15% Similarity=0.192 Sum_probs=90.2
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
+++++.+++++.+|++.|.+++.+.+||+++ +| +++|+++..|+++.... . ...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~---~------~~~----------- 55 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDE---EN---KVLGQVTLSDLLEIGPN---D------YET----------- 55 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHhhccc---c------ccc-----------
Confidence 3578899999999999999999999999965 45 89999999999872100 0 001
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
..+.++|..++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|.+|+++
T Consensus 56 -~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 56 -LKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred -cChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 1244557778889999999999999999999999999998899999999999875
No 51
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.45 E-value=2.5e-12 Score=103.85 Aligned_cols=108 Identities=24% Similarity=0.373 Sum_probs=91.8
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++.+++++.++++.|.+.+++++||+++ |+++|+++..|+++....+.. ..++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~------~~~v~~-------------~~ 61 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLE------LAKVKD-------------VM 61 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcccc------ccCHHH-------------Hh
Confidence 5678899999999999999999999999997 999999999999886543211 134555 34
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
..++.++.+++++.++++.|.+.+.+.+||++ ++|+++|+||+.|+++
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 62 TKDVITIDEDEQLYDAIRLMNKHNVGRLIVTD-DEGRPVGIITRTDILR 109 (110)
T ss_pred cCCceEECCCCCHHHHHHHHHhcCCCEEEEEC-CCCCEEEEEEhHHhhc
Confidence 45788999999999999999999999999999 4789999999999975
No 52
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.45 E-value=5.4e-13 Score=131.43 Aligned_cols=121 Identities=25% Similarity=0.377 Sum_probs=106.7
Q ss_pred ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh-hhhhhhcccCcccHHHHHhcC
Q 015103 271 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK-DKAYAQIHLDEMNIHQALQLG 349 (413)
Q Consensus 271 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~-~~~~~~~~l~~~~v~~~l~~~ 349 (413)
.++++++..+++++++.+++.+|...|.+.|++++.++++++..+||+|++|+....- ++... ..+|++
T Consensus 149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-----~~~V~e----- 218 (610)
T COG2905 149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-----TQKVSE----- 218 (610)
T ss_pred HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-----ccchhh-----
Confidence 4678889999999999999999999999999999999999999999999999998543 22111 245555
Q ss_pred CCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 350 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 350 ~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
+|+.|++++..++.+.+|+-+|.+++++++||++ +|+++|+||.+||++.+-
T Consensus 219 --------vmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e--~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 219 --------VMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE--DGQPLGILTLTDILRLFS 270 (610)
T ss_pred --------hhccCceeecCcchHHHHHHHHHHhCCceeeeec--CCeeeEEeeHHHHHHhhC
Confidence 8999999999999999999999999999999998 599999999999999864
No 53
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=2e-12 Score=106.89 Aligned_cols=120 Identities=18% Similarity=0.243 Sum_probs=92.2
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
++.++.+++++.+|++.|.+++++++||+|+ .+| +++|+++.+|+++++.................
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~--------- 67 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE--ESG---EVIGILSQRRLVEFLWENARSFPGLDPLYPIP--------- 67 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeC--CCC---cEEEEEEHHHHHHHHHHhHHhccchhhhhhhh---------
Confidence 5778999999999999999999999999975 225 79999999999987654321100000000000
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT 324 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~ 324 (413)
....+.|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||.+|+.
T Consensus 68 -~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 68 -LRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred -hhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 011234667889999999999999999999999999999889999999999985
No 54
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.44 E-value=2.8e-12 Score=103.74 Aligned_cols=108 Identities=16% Similarity=0.359 Sum_probs=90.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 358 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 358 (413)
++.++.+++++.+|++.|.+.+.+.+||++++ |+++|+++..++.+....+.. ..++.. +
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~------~~~~~~-------------~ 62 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE------DLDLRD-------------L 62 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC------cCCHHH-------------H
Confidence 46789999999999999999999999999987 999999999999986643221 123333 2
Q ss_pred CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 359 m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
+ .++.++.+++++.++++.|.+++.+.+||+| ++|+++|+||++|+++
T Consensus 63 ~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~di~~ 110 (111)
T cd04590 63 L-RPPLFVPESTPLDDLLEEMRKERSHMAIVVD-EYGGTAGLVTLEDILE 110 (111)
T ss_pred h-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEE-CCCCEEEEeEHHHhhc
Confidence 2 2577899999999999999999999999999 5799999999999975
No 55
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.44 E-value=2.5e-12 Score=103.89 Aligned_cols=110 Identities=24% Similarity=0.358 Sum_probs=92.0
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+......+... ..++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~-----~~~~~~-------------~~ 62 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREA-----TVLVGD-------------VM 62 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCccc-----ccCHHH-------------hc
Confidence 5678999999999999999989999999997 9999999999998755422110 123333 45
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
..++.++..++++.++++.|.+++.+.+||+| ++|+++|+||..||+++
T Consensus 63 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~it~~di~~~ 111 (111)
T cd04612 63 TRDPVTASPDETLRDALKRMAERDIGRLPVVD-DSGRLVGIVSRSDLLRA 111 (111)
T ss_pred cCCCeEECCCCCHHHHHHHHHhCCCCeeeEEc-CCCCEEEEEEHHHhhhC
Confidence 56789999999999999999999999999999 47999999999999863
No 56
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44 E-value=2.4e-12 Score=105.03 Aligned_cols=111 Identities=17% Similarity=0.225 Sum_probs=91.8
Q ss_pred cEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccccc
Q 015103 191 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 270 (413)
Q Consensus 191 ~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~ 270 (413)
+.++.+++++.+|++.|.+++...+||+|+ +| +++|+++.+++++.+...... ...
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~g---~~~G~vt~~dl~~~~~~~~~~------~~~------------ 58 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDP---HG---KLAGVLTKTDVVRQMGRCGGP------GCT------------ 58 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEehHHHHHHHhhcCCC------ccc------------
Confidence 567899999999999999999999999975 45 899999999998754321000 001
Q ss_pred ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 271 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 271 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
..+.++|..++.++.+++++.+|++.|.+++...+||+|++|+++|+++++|++.
T Consensus 59 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 59 APVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred CCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 2344557788999999999999999999999999999998899999999999864
No 57
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.44 E-value=2.3e-12 Score=104.56 Aligned_cols=112 Identities=15% Similarity=0.293 Sum_probs=93.4
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..++..+...... ....++.+ +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~----~~~~~v~~-------------~~ 65 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLD----ILTLPVAD-------------VM 65 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCc----cccCCHHH-------------hh
Confidence 45678999999999999988889999999988999999999999986653221 11234555 44
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
..+..++.+++++.++++.|..++.+.+||++ ++|+++|+||..||+++
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~iG~it~~di~~~ 114 (114)
T cd04604 66 TRNPKTIDPDALAAEALELMEENKITALPVVD-DNGRPVGVLHIHDLLRA 114 (114)
T ss_pred ccCCeEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCCEEEEEEHHHhhcC
Confidence 55678999999999999999999999999999 47999999999999863
No 58
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.9e-12 Score=106.51 Aligned_cols=114 Identities=16% Similarity=0.346 Sum_probs=91.8
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhh------cccCcccHHHHHhcCCCCC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ------IHLDEMNIHQALQLGQDAN 353 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~------~~l~~~~v~~~l~~~~~~~ 353 (413)
++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..++........... ..+...++.+
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSD--------- 71 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHH---------
Confidence 4678899999999999999999999999996 99999999999987544211100 0011223333
Q ss_pred CCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 354 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 354 ~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
+|..+..++.+++++.++++.|.+.+.+.+||+| + |+++|+||..|++++
T Consensus 72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 72 ----IMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD-D-GKLVGIVTRTDILRY 121 (121)
T ss_pred ----HccCCceEECCCCcHHHHHHHHHHcCCCcccEEE-C-CEEEEEEEHHHhhcC
Confidence 5566788999999999999999999999999999 5 899999999999864
No 59
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.43 E-value=7.2e-13 Score=137.51 Aligned_cols=284 Identities=14% Similarity=0.160 Sum_probs=176.7
Q ss_pred CcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhh--c
Q 015103 85 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET--H 162 (413)
Q Consensus 85 ~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~--~ 162 (413)
.++.|+|- .++++++.+.++.+|++.|.++++..+||.|.+ ++++|++|..|+...+...... +.+.. .
T Consensus 68 ~~V~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~------~~~~~~~~ 138 (546)
T PRK14869 68 PQVRDLEI--DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDP------EILSKSPT 138 (546)
T ss_pred CcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcch------hhhhhcCC
Confidence 57888884 469999999999999999999999999999976 5699999999999866543210 01111 0
Q ss_pred cHHHHHHHHHhhhcccc------C----C---------CCCCCCC-CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCC
Q 015103 163 TISAWKVGKLQLNLKRQ------M----D---------GNGRPCP-RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG 222 (413)
Q Consensus 163 ~i~~~~~~~~~~~~~~~------~----~---------~~~~~~~-~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~ 222 (413)
++..+. ..++.... . . .....+. ..++.+..... ....+.+.+++.++|.....
T Consensus 139 t~~~i~---~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d---~~~~ai~~~~~~lIlt~g~~ 212 (546)
T PRK14869 139 SLENII---RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDRED---IQLAAIEAGVRLLIITGGAP 212 (546)
T ss_pred CHHHHH---HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHH---HHHHHHHcCCCEEEECCCCC
Confidence 111111 11110000 0 0 0000122 23555543333 34456788899998885422
Q ss_pred CCC------CccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccccccccccCC-CCceEecCCCCHHHHHH
Q 015103 223 PAG------SCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG-RPFAMLRPTASLGSALA 295 (413)
Q Consensus 223 ~~g------~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~~ 295 (413)
-.. ....+.++.|..|......... . ...++++|+ +++.++++++++.++.+
T Consensus 213 ~~~~v~~la~~~~i~ii~t~~dt~~t~~~l~---------~------------~~~V~~iM~~~~~~~~~~~~~~~~~~~ 271 (546)
T PRK14869 213 VSEDVLELAKENGVTVISTPYDTFTTARLIN---------Q------------SIPVSYIMTTEDLVTFSKDDYLEDVKE 271 (546)
T ss_pred CCHHHHHHHHhCCCeEEEecccHHHHHHHhh---------c------------CCCHHHhccCCCcEEECCCCcHHHHHH
Confidence 000 0014778888888776543311 0 124566798 88999999999999999
Q ss_pred HHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHH---HhcCC----CCCCCcc-cCCCcceEE-
Q 015103 296 LLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA---LQLGQ----DANPSLG-FNGQRCQMC- 366 (413)
Q Consensus 296 ~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~---l~~~~----~~~~~~~-~m~~~~~~v- 366 (413)
.|.+++.+.+||+|++|+++|++|++|++......... ++.....+. +.... -...+.+ +++..++.+
T Consensus 272 ~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iL---VD~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~ 348 (546)
T PRK14869 272 VMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVIL---VDHNEKSQAVEGIEEAEILEIIDHHRLGDIQTSNPIFFR 348 (546)
T ss_pred HHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEE---EcCccccccccchhhceEEEEecCCccCCCCCCCCcEEE
Confidence 99999999999999999999999999999854421100 000000000 00000 0001122 454444433
Q ss_pred --eCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 367 --LRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 367 --~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
+...+..-+.+.|.+.++...+++. +.-+.||+|-++.+++
T Consensus 349 ~~~~gst~tiv~~~~~~~~i~~~~~ia--~~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 349 NEPVGSTSTIVARMYRENGIEPSPEIA--GLLLAAILSDTLLFKS 391 (546)
T ss_pred eeeeeeHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHHhcCccC
Confidence 3457777888999999988777776 3568888888877653
No 60
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.43 E-value=4e-12 Score=102.92 Aligned_cols=110 Identities=18% Similarity=0.288 Sum_probs=91.5
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
+++++.+++++.++++.|.+.+...++|+|+ |+++|+++..++......+... .+.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~----~~~~i~~-------------~~ 63 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGLP----SSTPVGE-------------IA 63 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCCC----CCCCHHH-------------Hh
Confidence 4567899999999999999999999999997 8999999999998755422111 1234555 44
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
..++.++.+++++.++++.|.+++.+.+||+| + |+++|+||..|++++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~dl~~~ 111 (111)
T cd04589 64 TFPLITVDPDDFLFNALLLMTRHRIHRVVVRE-G-GEVVGVLEQTDLLSF 111 (111)
T ss_pred CCCcEEECCCCcHHHHHHHHHHhCccEEEEee-C-CEEEEEEEhHHhhcC
Confidence 55788999999999999999999999999998 3 899999999999874
No 61
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.43 E-value=4.2e-12 Score=102.17 Aligned_cols=106 Identities=19% Similarity=0.306 Sum_probs=90.8
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++.++.++.++++.|.+++...+||+|++|+++|+++..|+...... ..++.+ +|
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~---------~~~v~~-------------~~ 60 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKE---------AKSLED-------------IM 60 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhc---------CCcHhH-------------hh
Confidence 46678999999999999999999999999988999999999999874321 123444 44
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
...+.++++++++.++++.|.+.+.+++||++ ++|+++|+||..|+++
T Consensus 61 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~-~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 61 LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVD-EDGKLVGLITRSSLVD 108 (109)
T ss_pred cCCceEECCCCcHHHHHHHHHHcCCceeeEEC-CCCeEEEEEehHHhhc
Confidence 45688999999999999999999999999999 5789999999999975
No 62
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.43 E-value=4.3e-12 Score=102.52 Aligned_cols=108 Identities=23% Similarity=0.449 Sum_probs=92.1
Q ss_pred CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 358 (413)
Q Consensus 279 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 358 (413)
+++.++..+.++.++.+.|.+.+.+.+||+|+ |+++|+++..|+......+. ...++.+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~~------~~~~~~~-------------~ 61 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHGL------GHAPVKD-------------Y 61 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhccc------ccCcHHH-------------H
Confidence 35778999999999999999889999999997 99999999999987553221 1345665 4
Q ss_pred CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 359 m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
|..++.++.+++++.++++.|.+++.+.+||+| +|+++|+||+.|+++
T Consensus 62 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~ 109 (110)
T cd04595 62 MSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR 109 (110)
T ss_pred hcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence 455788999999999999999999999999998 589999999999975
No 63
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.43 E-value=3.9e-12 Score=102.92 Aligned_cols=109 Identities=20% Similarity=0.333 Sum_probs=90.8
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++..+.++.++.+.|.+.+.+.+||+|+ |+++|+++..++.......... .+.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~----~~~~i~~-------------~~ 63 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGLD----PDTPVSE-------------VM 63 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCCC----ccCCHHH-------------Hh
Confidence 5678899999999999999989999999997 9999999999998743321110 1234555 44
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
..+++++.+++++.++++.|.+++.+++||++ + |+++|++|..|+++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Giit~~di~~ 110 (111)
T cd04800 64 TAPPITIPPDATVFEALLLMLERGIHHLPVVD-D-GRLVGVISATDLLR 110 (111)
T ss_pred CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEHHHhhc
Confidence 45788999999999999999999999999999 4 89999999999985
No 64
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.43 E-value=8.6e-12 Score=125.73 Aligned_cols=206 Identities=12% Similarity=0.125 Sum_probs=141.7
Q ss_pred CeeeceeCCCCeEEEEeehHHHHHHHHHhccCC---CCCCHHHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeC
Q 015103 119 PMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAG 195 (413)
Q Consensus 119 ~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 195 (413)
..+|++.+. ..-+|..++...+.+.+.-+ .+++.+ .+.+...... +.++|..+++++.
T Consensus 43 l~~Pi~sa~----Mdtvt~~~MAiaLAr~GGiGvih~nl~~~--------~q~~~l~~VK-------v~~iMi~~pvtv~ 103 (479)
T PRK07807 43 TTIPLVVAN----MTAVAGRRMAETVARRGGLVVLPQDIPID--------VVAEVVAWVK-------SRDLVFDTPVTLS 103 (479)
T ss_pred cccceeecC----CcchhHHHHHHHHHHCCCceEeeCCCCHH--------HHHHHHhhcc-------cccccccCCeEEC
Confidence 457887643 34567777777777665211 233322 2222222111 2346889999999
Q ss_pred CCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccccccccc
Q 015103 196 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 275 (413)
Q Consensus 196 ~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~ 275 (413)
+++++.+|+++|.+++++.+||+|+ ++ +++|++|.+|+... . .. ..+.+
T Consensus 104 ~d~tv~eA~~~m~~~~~s~l~VVD~---~g---klvGIVT~rDL~~~------------~-~~------------~~V~d 152 (479)
T PRK07807 104 PDDTVGDALALLPKRAHGAVVVVDE---EG---RPVGVVTEADCAGV------------D-RF------------TQVRD 152 (479)
T ss_pred CCCCHHHHHHHHHhcCCceEEEECC---CC---eEEEEEeHHHHhcC------------c-cC------------CCHHH
Confidence 9999999999999999999999964 45 89999999998430 0 01 12456
Q ss_pred cCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCC
Q 015103 276 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS 355 (413)
Q Consensus 276 ~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~ 355 (413)
+|.++++++.+++++.+|+++|.++++..+||+|++|+++|+||++||++........... ....+..+
T Consensus 153 iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~-g~l~V~aa---------- 221 (479)
T PRK07807 153 VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAA-GRLRVAAA---------- 221 (479)
T ss_pred hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhh-hccchHhh----------
Confidence 6888999999999999999999999999999999889999999999999865533111000 01222221
Q ss_pred cccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCe
Q 015103 356 LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKR 396 (413)
Q Consensus 356 ~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~ 396 (413)
. .......+.++.|.+.+++. .++|..+|.
T Consensus 222 --------v--~~~~~~~~~a~~Lv~aGvd~-i~~D~a~~~ 251 (479)
T PRK07807 222 --------V--GINGDVAAKARALLEAGVDV-LVVDTAHGH 251 (479)
T ss_pred --------h--ccChhHHHHHHHHHHhCCCE-EEEeccCCc
Confidence 1 12234667788888888886 567744444
No 65
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=3.4e-12 Score=104.05 Aligned_cols=111 Identities=18% Similarity=0.313 Sum_probs=88.9
Q ss_pred CceEecCCCCHHHHHHHHHhCC-CCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103 280 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 358 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 358 (413)
++.++.++.++.++++.|.+++ ...++|+| +|+++|+++..|++.....+.. ..+.++.+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~-------------~ 63 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGKD----LSDLPIGE-------------V 63 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCCC----ccccCHHH-------------h
Confidence 4567899999999999998888 66777777 6999999999999875542211 11234555 4
Q ss_pred CCCcceEEeCC--CCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 359 NGQRCQMCLRS--DPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 359 m~~~~~~v~~~--~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
|..++.++.++ +++.++++.|.+++.+.+||+| ++|+++|+||++|++++
T Consensus 64 ~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd-~~~~~~Gvit~~dl~~~ 115 (115)
T cd04620 64 MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLD-DQGQLIGLVTAESIRQV 115 (115)
T ss_pred cCCCcEEEecccccCHHHHHHHHHHhCCceEEEEc-CCCCEEEEEEhHHhhcC
Confidence 45567788877 7999999999999999999999 57999999999999863
No 66
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.43 E-value=2.6e-12 Score=104.19 Aligned_cols=111 Identities=17% Similarity=0.302 Sum_probs=90.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++.+++++.++++.|.+++.+.+||+++ |+++|+++..|++........ .....++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~-------------i~ 64 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGL---DPESTLVER-------------VM 64 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCC---CcCcCCHHH-------------hc
Confidence 4667899999999999999999999999997 999999999999853321111 000134554 55
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
..++.++.+++++.++++.|..++.+++||++ ++|+++|+||..|++.
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~-~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 65 TPNPVCATSDTPVLEALHLMVQGKFRHLPVVD-KSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCCCeEEcCCCCHHHHHHHHHHcCCCcccEEC-CCCCEEEEEEHHHhcc
Confidence 56788999999999999999999999999999 4799999999999975
No 67
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.43 E-value=2.6e-12 Score=106.13 Aligned_cols=122 Identities=19% Similarity=0.358 Sum_probs=95.8
Q ss_pred CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 268 (413)
Q Consensus 189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 268 (413)
++++++.+++++.++++.|.+++++++||+++ .| +++|+++.+++++++...... .....+. ...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~--~~~~~~~-------~~~ 66 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDG---DR---RLVGIVTQRDLLRHARPDGRR--PLRGRLR-------GRD 66 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECC---CC---CEEEEEEHHHHHhhhcccccc--hhhhhhh-------ccc
Confidence 46889999999999999999999999999965 35 899999999998765422110 0000000 011
Q ss_pred ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
....++++|.+.+.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|++.
T Consensus 67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 122456668888999999999999999999999999999998999999999999874
No 68
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.43 E-value=4.6e-12 Score=102.33 Aligned_cols=109 Identities=22% Similarity=0.307 Sum_probs=92.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+....+.. .+.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~-----~~~~v~~-------------~~ 62 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPD-----LQTPVGE-------------VM 62 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCC-----CCcCHHH-------------hc
Confidence 4567899999999999999989999999986 999999999999886543221 1345555 45
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
..++.++.+++++.++++.|.+.+.+.+||+| ++|+++|+||.+||++
T Consensus 63 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 63 SSPLLTVPADTSLYDARQLMREHGIRHLVVVD-DDGELLGLLSQTDLLQ 110 (111)
T ss_pred CCCceEECCCCCHHHHHHHHHHcCCeEEEEEC-CCCcEEEEEEhHHhhc
Confidence 55788999999999999999999999999999 5799999999999985
No 69
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.42 E-value=2.3e-12 Score=105.83 Aligned_cols=111 Identities=19% Similarity=0.309 Sum_probs=90.4
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
++.++.+++++.+|++.|..++...+||+|+ +| +++|+++..++++...... . ...
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~Givt~~dl~~~~~~~~-~------~~~----------- 57 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE---DG---DLVGVVSRKDLLKASIGGA-D------LQK----------- 57 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHcCC-C------ccC-----------
Confidence 5788999999999999999999999999975 45 7999999999988553210 0 001
Q ss_pred cccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGiit~~dl~~ 325 (413)
..++++|.+ ++.++.+++++.+++++|.+++++.+||+|++ |+++|++|.+|+.+
T Consensus 58 -~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 58 -VPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred -CCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 123344653 68899999999999999999999999999876 69999999999865
No 70
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.42 E-value=3.3e-12 Score=104.84 Aligned_cols=115 Identities=23% Similarity=0.330 Sum_probs=92.3
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcc------cCcccHHHHHhcCCCCC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH------LDEMNIHQALQLGQDAN 353 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~------l~~~~v~~~l~~~~~~~ 353 (413)
++.++.+++++.++++.|.+.+...+||+|+ |+++|+++..++............. ....++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSD--------- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHH---------
Confidence 4667899999999999999999999999997 9999999999998855321110000 00122222
Q ss_pred CCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 354 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 354 ~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
+|.+++.++.+++++.++++.|.+.+.+.+||+| ++|+++|+||..||+++
T Consensus 72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvvt~~di~~~ 122 (122)
T cd04585 72 ----IMTRDPITVSPDASVEEAAELMLERKISGLPVVD-DQGRLVGIITESDLFRA 122 (122)
T ss_pred ----hccCCCeEeCCCCcHHHHHHHHHHcCCCceeEEC-CCCcEEEEEEHHHhhhC
Confidence 5666788999999999999999999999999999 57999999999999863
No 71
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=5.8e-12 Score=102.05 Aligned_cols=111 Identities=14% Similarity=0.279 Sum_probs=89.4
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
.+.++.+++++.++++.|.+++.+.++|.+ +|+++|+++..|+.+........ +.+.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~~---~~~~~v~~-------------~~ 64 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGAG---VLDTTVRA-------------IM 64 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCCc---hhcCCHHH-------------Hh
Confidence 356789999999999999888888887776 59999999999998755421100 11234555 44
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
..++.++.+++++.++++.|..++..++||+| +|+++|+||.+||+++
T Consensus 65 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~--~~~~~Gvvt~~dl~~~ 112 (112)
T cd04625 65 NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD--GGTLLGVISFHDVAKA 112 (112)
T ss_pred CCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE--CCEEEEEEEHHHhhcC
Confidence 45678999999999999999999999999999 4899999999999864
No 72
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.41 E-value=2.5e-12 Score=134.23 Aligned_cols=123 Identities=18% Similarity=0.232 Sum_probs=103.5
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 351 (413)
Q Consensus 272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~ 351 (413)
+++++|+++..++++++++.++++.|.+++.+.+||+|++++++|+++.+|+.+....... ..+.++.+
T Consensus 448 ~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~----~~~~~v~d------- 516 (574)
T PRK01862 448 QMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRD----TTDKTAAD------- 516 (574)
T ss_pred cHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccc----cccchHHH-------
Confidence 5778899999999999999999999999999999999999999999999999874432111 00234444
Q ss_pred CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCC-CeEEEEEehHHHHHHhh
Q 015103 352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFRFLL 411 (413)
Q Consensus 352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~-~~liGvIS~~DIl~~l~ 411 (413)
+|.+++.++++++++.++++.|.+++.+++||+|+++ ++++|+||++|+++++.
T Consensus 517 ------im~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 517 ------YAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred ------hccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 5666788999999999999999999999999999422 58999999999999875
No 73
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=6.3e-12 Score=102.37 Aligned_cols=112 Identities=16% Similarity=0.269 Sum_probs=91.8
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
++..+.+++++.+|++.|.+++.+.+||+++ ..| +++|+++.+|+++++...... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~---~~~G~v~~~dl~~~~~~~~~~------~~~----------- 59 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR--RES---DAYGIVTMRDILKKVVAEGRD------PDR----------- 59 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CCC---cEEEEEehHHHHHHHHhCCCC------CCc-----------
Confidence 5788999999999999999999999999975 115 799999999999865431100 001
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
..+.++|..++.++.+++++.++++.|.+++...+||+|+ |+++|+++..|++.
T Consensus 60 -~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 60 -VNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred -cCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 1344557778999999999999999999999999999986 99999999999864
No 74
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=2.6e-12 Score=103.77 Aligned_cols=103 Identities=21% Similarity=0.305 Sum_probs=86.6
Q ss_pred ecCCCCHHHHHHHHHhCC-----CCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103 284 LRPTASLGSALALLVQAD-----VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 358 (413)
Q Consensus 284 v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 358 (413)
+.+++++.++++.|.+++ +..+||+|++|+++|+++.++++... . +.++.+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~-------~---~~~v~~-------------~ 58 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD-------P---DTPVSD-------------I 58 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC-------C---cchHHH-------------H
Confidence 567889999999998777 47899999889999999999987520 0 234555 3
Q ss_pred CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103 359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 410 (413)
Q Consensus 359 m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l 410 (413)
+..++.++.+++++.++++.|..++.+.+||+| ++|+++|+||..|+++++
T Consensus 59 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~dll~~~ 109 (109)
T cd04606 59 MDTDVISVSADDDQEEVARLFEKYDLLALPVVD-EEGRLVGIITVDDVIDVI 109 (109)
T ss_pred hCCCCeEEcCCCCHHHHHHHHHHcCCceeeeEC-CCCcEEEEEEhHHhhhhC
Confidence 445688999999999999999999999999999 579999999999999864
No 75
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.40 E-value=4.2e-12 Score=126.50 Aligned_cols=118 Identities=12% Similarity=0.244 Sum_probs=100.9
Q ss_pred cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103 272 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 348 (413)
Q Consensus 272 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~ 348 (413)
+++++|++ ++.+++.++++.++++.+.+++++++||++++ ++++|+++.+|++.....+ ...+.+
T Consensus 192 ~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~--------~~~l~~---- 259 (408)
T TIGR03520 192 DTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK--------NFDWQS---- 259 (408)
T ss_pred EeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC--------CCCHHH----
Confidence 57788986 78999999999999999999999999999863 6999999999998644311 123444
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+|. ++.++++++++.++++.|.+++.|..+|+| +.|.++|+||..||++.++|
T Consensus 260 ---------~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD-E~G~~~GiVT~eDileeivg 312 (408)
T TIGR03520 260 ---------LLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVD-EYGGTSGLVTLEDIIEEIVG 312 (408)
T ss_pred ---------HcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEc-CCCCEEEEEEHHHHHHHHhC
Confidence 232 578999999999999999999999999999 68999999999999999976
No 76
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.40 E-value=7.6e-12 Score=101.44 Aligned_cols=111 Identities=23% Similarity=0.380 Sum_probs=90.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH-HHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 358 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~-~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 358 (413)
++.++.+++++.+|++.|.+.+.+.+||+|+ |+++|+++..+++. ....+.. ....++.+ +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~----~~~~~~~~-------------~ 63 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRD----PDTTTVGD-------------V 63 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCC----cccCCHHH-------------h
Confidence 4678999999999999999999999999997 99999999999873 3322111 11123444 5
Q ss_pred CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 359 m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
|...+.++.+++++.++++.|...+.+++||+| ++|+++|+||..|++++
T Consensus 64 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~it~~di~~~ 113 (113)
T cd04622 64 MTRGVVTVTEDDDVDEAARLMREHQVRRLPVVD-DDGRLVGIVSLGDLARA 113 (113)
T ss_pred ccCCccEECCCCCHHHHHHHHHHcCCCeeeEEC-CCCcEEEEEEHHHhhcC
Confidence 556788999999999999999999999999999 47999999999999863
No 77
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.39 E-value=1.1e-11 Score=100.32 Aligned_cols=110 Identities=15% Similarity=0.315 Sum_probs=90.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++.+++++.++++.|.+.+.+.+||+|+ ++++|+++..|++.....+.... .+.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~---~~~~~~~-------------~~ 64 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLKP---REVPVGE-------------VM 64 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCCc---ccCCHHH-------------hc
Confidence 4667899999999999999999999999985 59999999999998543221100 1234555 45
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
..++.++.+++++.++++.|.+++.+.+||+| ++ +++|+||+.|+++
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 65 STPLITIDPNASLNEAAKLMAKHGIKRLPVVD-DD-ELVGIVTTTDIVM 111 (112)
T ss_pred CCCcEEECCCCCHHHHHHHHHHcCCCeeEEee-CC-EEEEEEEhhhhhc
Confidence 55788999999999999999999999999999 34 9999999999975
No 78
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.39 E-value=2.4e-11 Score=122.40 Aligned_cols=159 Identities=16% Similarity=0.144 Sum_probs=117.2
Q ss_pred eeeceeCCCCeEEEEeehHHHHHHHHHhccCC---CCCCHHHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCC
Q 015103 120 MVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGP 196 (413)
Q Consensus 120 s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~ 196 (413)
.+|++.+. .--+|.....-.+.+.+.-+ .++ ++..|.+...... +.+.|.++++++.+
T Consensus 43 ~~P~vsa~----mdtvTe~~MAi~~A~~GGigvIh~n~--------~i~~qae~v~~VK-------v~eim~~~pvtv~p 103 (475)
T TIGR01303 43 TIPLVVAN----MTAVAGRRMAETVARRGGIVILPQDL--------PIPAVKQTVAFVK-------SRDLVLDTPITLAP 103 (475)
T ss_pred ccceeecc----chhhHHHHHHHHHHHCCCEEEEeCCC--------CHHHHHHHHhhcc-------hhhccccCCeEECC
Confidence 46777653 23356666666565554321 233 3344443333211 12357788999999
Q ss_pred CCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccccccccccc
Q 015103 197 YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEA 276 (413)
Q Consensus 197 ~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~ 276 (413)
++++.+|+++|.+++++.+||+|+ + +++|++|.+|+... . .. ..+.++
T Consensus 104 ~~tI~eA~~lm~~~~~~~~vVvD~----g---klvGIVT~rDL~~~------------~-~~------------~~V~dI 151 (475)
T TIGR01303 104 HDTVSDAMALIHKRAHGAAVVILE----D---RPVGLVTDSDLLGV------------D-RF------------TQVRDI 151 (475)
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEC----C---EEEEEEEHHHhhcC------------C-CC------------CCHHHH
Confidence 999999999999999999999863 4 79999999998420 0 01 134556
Q ss_pred CCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103 277 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 329 (413)
Q Consensus 277 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~ 329 (413)
|+.+++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+||++....
T Consensus 152 Mt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 152 MSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY 204 (475)
T ss_pred ccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC
Confidence 88899999999999999999999999999999988999999999999986553
No 79
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=6.3e-12 Score=103.58 Aligned_cols=115 Identities=14% Similarity=0.192 Sum_probs=91.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhh-hc-----ccCcccHHHHHhcCCCCC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA-QI-----HLDEMNIHQALQLGQDAN 353 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~-~~-----~l~~~~v~~~l~~~~~~~ 353 (413)
++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++..++.+........ .. .....++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQ--------- 71 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHH---------
Confidence 4678899999999999999999999999996 9999999999998754321100 00 000112333
Q ss_pred CCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 354 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 354 ~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
+|..+++++.+++++.++++.|.+++...+||+| ++|+++|++|+.|++++
T Consensus 72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~-~~~~~~Gvit~~dll~~ 122 (122)
T cd04637 72 ----IMTRDPITVSPDTPVDEASKLLLENSISCLPVVD-ENGQLIGIITWKDLLKY 122 (122)
T ss_pred ----hhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEEC-CCCCEEEEEEHHHhhhC
Confidence 4556788999999999999999999999999999 57999999999999874
No 80
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.39 E-value=9.3e-12 Score=101.45 Aligned_cols=106 Identities=22% Similarity=0.324 Sum_probs=87.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCc
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 356 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~ 356 (413)
++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+++..|+..... . ..++.+
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~--------~~~v~~------------ 61 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-S--------ETPLSE------------ 61 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-c--------CCCHHH------------
Confidence 4668899999999999999889999999997 789999999999865321 0 123555
Q ss_pred ccCCCcceEEeC--CCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 357 GFNGQRCQMCLR--SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 357 ~~m~~~~~~v~~--~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
+|.....++.. ++++.++++.|.+++.+.+||+| ++|+++|+||+.||++
T Consensus 62 -~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~-~~~~~~Gvit~~di~~ 113 (114)
T cd04602 62 -VMTPREVLVVAPTGITLEEANEILRESKKGKLPIVN-DDGELVALVTRSDLKK 113 (114)
T ss_pred -hcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEEC-CCCeEEEEEEHHHhhc
Confidence 44445666766 99999999999999999999999 5899999999999975
No 81
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.38 E-value=9.1e-12 Score=100.31 Aligned_cols=109 Identities=19% Similarity=0.366 Sum_probs=88.0
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++.+++++.++++.|.+++.+.+||+|+ |+++|+++..|+.+........ . +.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~-~---~~~~~~-------------~~ 63 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAK-F---SLPVRE-------------VM 63 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccccc-c---CcCHHH-------------Hh
Confidence 4568899999999999999999999999997 9999999999999865422110 0 234555 34
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
..++.++++++++.+++++|.+ .. .+||++ ++|+++|+||++||++|
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~-~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 64 GEPLPTVDPDAPIEELSELLDR-GN-VAVVVD-EGGKFVGIITRADLLKY 110 (110)
T ss_pred cCCCceeCCCCcHHHHHHHHHh-CC-ceeEEe-cCCeEEEEEeHHHhhcC
Confidence 4567889999999999999988 33 478888 57999999999999875
No 82
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=1e-11 Score=99.31 Aligned_cols=103 Identities=16% Similarity=0.276 Sum_probs=88.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++.+++++.++++.|.+++.+.+||+| +|+++|+++..++..... +.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~----------~~~~~~-------------~~ 57 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP----------NRLVAD-------------AM 57 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc----------cCCHHH-------------Hc
Confidence 466789999999999999999999999998 699999999999976321 123444 44
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
..++.++.+++++.++++.|.+++...+||+| + |+++|+||..|++.
T Consensus 58 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~~l~~ 104 (105)
T cd04599 58 TREVVTISPEASLLEAKRLMEEKKIERLPVLR-E-RKLVGIITKGTIAL 104 (105)
T ss_pred cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE-C-CEEEEEEEHHHhcc
Confidence 45788999999999999999999999999999 4 99999999999973
No 83
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=8.7e-12 Score=100.06 Aligned_cols=105 Identities=16% Similarity=0.332 Sum_probs=89.5
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++..+.++.++++.|.+.+.+.+||+|+ ++++|+++..|++... . +.++.+ +|
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~~----~------~~~~~~-------------~~ 58 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGKD----P------DETVEE-------------IM 58 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhccC----c------cccHHH-------------hC
Confidence 5678899999999999998888889999986 9999999999987521 0 234555 45
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
..++.++.+++++.++++.|.+++.+++||++ ++|+++|+|+..||+++
T Consensus 59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~g~~~Gvi~~~di~~~ 107 (107)
T cd04610 59 SKDLVVAVPEMDIMDAARVMFRTGISKLPVVD-ENNNLVGIITNTDVIRS 107 (107)
T ss_pred CCCCeEECCCCCHHHHHHHHHHhCCCeEeEEC-CCCeEEEEEEHHHhhcC
Confidence 55688999999999999999999999999999 57999999999999863
No 84
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.37 E-value=6.9e-12 Score=101.10 Aligned_cols=106 Identities=20% Similarity=0.387 Sum_probs=88.4
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++..++++.++++.|.+.+.+.+||+|++|+++|+++..++..... .+.++.+ +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~---------~~~~v~~-------------~~ 60 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD---------LDKPVSE-------------VM 60 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc---------CCCCHHH-------------hc
Confidence 5678899999999999999999999999998899999999999864211 0235555 34
Q ss_pred CCcceEEeC-CCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 360 GQRCQMCLR-SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 360 ~~~~~~v~~-~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
..++.++.. ++++.++++.|.+.+.+.+||+| ++|+++|+||.+|+++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 61 TPENLLTTVEGTSLEEALELLHEHKIEKLPVVD-DEGKLKGLITVKDIEK 109 (110)
T ss_pred ccCceEEecCCCCHHHHHHHHHHhCCCeeeEEc-CCCCEEEEEEhhhhhc
Confidence 344566666 99999999999999999999999 5799999999999986
No 85
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.37 E-value=1.3e-11 Score=101.45 Aligned_cols=115 Identities=20% Similarity=0.328 Sum_probs=92.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhh-----cccCcccHHHHHhcCCCCCC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ-----IHLDEMNIHQALQLGQDANP 354 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~-----~~l~~~~v~~~l~~~~~~~~ 354 (413)
++.++++++++.+|++.|.+.+.+.+||+|++|+++|+++..++........... ......++.+
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~---------- 71 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKE---------- 71 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHH----------
Confidence 4678899999999999999999999999998899999999999987543211000 0011234444
Q ss_pred CcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 355 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 355 ~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
+|..++.++..++++.++++.|.+++...+||+| + |+++|++|..||+++
T Consensus 72 ---~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Gvv~~~di~~~ 121 (121)
T cd04584 72 ---IMTKDVITVHPLDTVEEAALLMREHRIGCLPVVE-D-GRLVGIITETDLLRT 121 (121)
T ss_pred ---HhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHhhcC
Confidence 4455788999999999999999999999999999 4 899999999999863
No 86
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.37 E-value=4.3e-11 Score=117.43 Aligned_cols=196 Identities=17% Similarity=0.169 Sum_probs=146.8
Q ss_pred EEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhhccHHHHHHHHHhhhc
Q 015103 97 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNL 176 (413)
Q Consensus 97 vv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~ 176 (413)
.+.+.+..++.+|...|.++++..+||.|.+.++..+++|..-++..+....... ....+-..++...
T Consensus 164 ~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~---~~~~~l~~s~~dl--------- 231 (381)
T KOG1764|consen 164 FVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLL---PLPSLLSKSLSDL--------- 231 (381)
T ss_pred ceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhccc---ccHHHhhCCHHHh---------
Confidence 4899999999999999999999999999988889999999999998876554322 1122222222221
Q ss_pred cccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccc
Q 015103 177 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPI 256 (413)
Q Consensus 177 ~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~ 256 (413)
+. .....+..+..++++.+|++.|..++++.+||++. .| +.+|..+..|+........- ..
T Consensus 232 -----~i--g~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~---~g---~~v~~~s~~Dv~~l~~~~~~------~~ 292 (381)
T KOG1764|consen 232 -----GI--GTWSNIASISEDTPVIEALKIMSERRISALPVVDE---NG---KKVGNYSRFDVIHLAREGTY------NN 292 (381)
T ss_pred -----Cc--chhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC---CC---ceecceehhhhhhhhhcCcc------Cc
Confidence 01 12346899999999999999999999999999976 45 56999999999875543211 11
Q ss_pred cccc-ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103 257 LQQP-VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 329 (413)
Q Consensus 257 ~~~~-i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~ 329 (413)
+... ++. +. .........+++++++.++.+++..|..++++++.|||++|.++|++|..|++..+..
T Consensus 293 ~~~~~l~~-----~~-~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~ 360 (381)
T KOG1764|consen 293 LDLSCLSE-----AL-SHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVL 360 (381)
T ss_pred cchhHHHH-----Hh-hhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHh
Confidence 1111 111 10 0111122358999999999999999999999999999999999999999999996653
No 87
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=1.6e-11 Score=99.37 Aligned_cols=111 Identities=20% Similarity=0.359 Sum_probs=91.6
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
++.++.++.++.+|++.|.+++++++||+++ ++ +++|+++.+++++++...... ...
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~------~~~----------- 58 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD---GG---RLVGIFSERDIVRKVALRGAS------ALD----------- 58 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEehHHHHHHHhhcCCC------ccc-----------
Confidence 5678899999999999999999999999965 35 899999999999866432110 001
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
.++.++|.+++.++.+++++.++++.|.+.+.+.+||+++ |+++|+++.+|+++
T Consensus 59 -~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 59 -TPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred -cCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 1344557778899999999999999999999999999986 99999999999864
No 88
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=1.8e-11 Score=98.84 Aligned_cols=108 Identities=21% Similarity=0.428 Sum_probs=91.2
Q ss_pred CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 268 (413)
Q Consensus 189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 268 (413)
++++.+.+++++.+|++.|.+++...+||+++ +| +++|+++.+++++.+.... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~-----------~--------- 55 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE---DG---RLVGIVTSWDISKAVARDK-----------K--------- 55 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECC---CC---cEEEEEeHHHHHHHHhhCc-----------c---------
Confidence 46788999999999999999999999999965 45 8999999999987543210 0
Q ss_pred ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
.+.++|.+++.++.+++++.++++.|.+++...+||++++|+++|++++.|+.+
T Consensus 56 ---~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 56 ---SVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred ---CHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 123446678889999999999999999999999999998899999999999864
No 89
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.36 E-value=1.5e-11 Score=97.37 Aligned_cols=94 Identities=13% Similarity=0.238 Sum_probs=83.6
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
+++++.+++++.+|++.|.+++++.+||+|+ +| +++|+++.+|+++..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~-------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD---DG---KLSGIITERDLIAKS-------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEEHHHHhcCC--------------------------
Confidence 5678999999999999999999999999964 45 899999999997610
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
.+.++.+++++.+++++|.+++.+.+||+|++|+++|++|++|+++
T Consensus 50 ----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 50 ----------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred ----------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 1568899999999999999999999999998899999999999874
No 90
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.36 E-value=1.6e-11 Score=98.35 Aligned_cols=104 Identities=13% Similarity=0.198 Sum_probs=88.2
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
++.++.++.++.+|++.|.+++.+.+||+++ +| +++|+++..|+++... .
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~---~g---~~~Giv~~~dl~~~~~--------------~---------- 51 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA---DG---QPLGFVTRREAARASG--------------G---------- 51 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEeHHHHHHhcc--------------c----------
Confidence 4678899999999999999999999999964 45 8999999999986210 1
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
.++++|.+.+..+.+++++.++++.|.+++.+.+||+|++|+++|++++++++.
T Consensus 52 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 --CCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred --chhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 123346667788999999999999999999999999998899999999999864
No 91
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.36 E-value=1.3e-11 Score=98.81 Aligned_cols=100 Identities=15% Similarity=0.257 Sum_probs=85.7
Q ss_pred eEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccCCC
Q 015103 282 AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQ 361 (413)
Q Consensus 282 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~~ 361 (413)
+++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..++..... .++.+ +|..
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~-----------~~~~~-------------~~~~ 58 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENATY-----------GDVVD-------------YIVR 58 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhcc-----------cchhh-------------hhhc
Confidence 46889999999999999999999999997 99999999999876321 12333 3445
Q ss_pred cceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 362 RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 362 ~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
.+.++.+++++.++++.|.+++...+||+| +|+++|+||..|+++
T Consensus 59 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~--~~~~iGvit~~dl~~ 103 (104)
T cd04594 59 GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD--DGKFKGIVTLDSILD 103 (104)
T ss_pred CCcEEcCCCCHHHHHHHHHHcCcceEEEEE--CCEEEEEEEHHHhhc
Confidence 678999999999999999999999999998 489999999999975
No 92
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.35 E-value=2.2e-11 Score=97.72 Aligned_cols=112 Identities=22% Similarity=0.439 Sum_probs=92.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++..++++.++++.|.+++.+.+||++++++++|+++..++............ ..+.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~----~~~~~-------------~~ 64 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPL----VTVGD-------------VM 64 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCcc----ccHHH-------------Hh
Confidence 45678899999999999999999999999988999999999999886643221110 11333 34
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
..++.++.+++++.++++.|.+.+.+.++|+| ++|+++|++|..|++++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~i~~~dl~~~ 113 (113)
T cd02205 65 TRDVVTVSPDTSLEEAAELMLEHGIRRLPVVD-DEGRLVGIVTRSDILRA 113 (113)
T ss_pred cCCceecCCCcCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEHHHhhcC
Confidence 45788899999999999999999999999999 57999999999999863
No 93
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.5e-11 Score=99.49 Aligned_cols=109 Identities=19% Similarity=0.396 Sum_probs=91.1
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
++.++.+++++.+|++.|.+.+...+||+++ +| +++|+++..++.+++.... ...
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~---------~~~---------- 56 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDG---DG---HLVGLLTRDDLIRALAEGG---------PDA---------- 56 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECC---CC---cEEEEeeHHHHHHHHHhcC---------CCC----------
Confidence 4678899999999999999889999999965 45 8999999999988654211 011
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
.+.++|..++.++.+++++.++++.|.+++...+||++++|+++|++|.+|+..
T Consensus 57 --~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 57 --PVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred --cHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 233447778899999999999999999999999999997799999999999864
No 94
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.3e-11 Score=101.65 Aligned_cols=120 Identities=20% Similarity=0.415 Sum_probs=94.3
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
+++++.+++++.+|++.|.+.+++.+||+++ +| +++|+++..++++++........ ...... ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~------~~~~~~----~~ 65 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE---DG---KLVGLLTQRDLLRAALSSLSDNG------EESLTK----ER 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECC---CC---CEEEEEEHHHHHHHhcccccccc------cccccc----cc
Confidence 5678999999999999999999999999965 45 89999999999986643221100 000000 01
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
...+.++|..++.++.+++++.++++.|.+.+.+.+||++++|+++|++|..|++.
T Consensus 66 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 66 DVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred CcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 12345567788899999999999999999999999999998899999999999875
No 95
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.5e-11 Score=102.20 Aligned_cols=123 Identities=16% Similarity=0.264 Sum_probs=91.8
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccc-cccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI-QLGT 268 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l-~i~~ 268 (413)
.++++++++++.+|++.|.++++..+||+|+ .| +++|+++..|+++........ ...+.... .+..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~-------~~~~~~~~~~~~~ 68 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE---KG---KLIGNISASDLKGLLLSPDDL-------LLYRTITFKELSE 68 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECC---CC---cEEEEEEHHHhhhhhcCcchh-------hcccchhhhhhhh
Confidence 4678999999999999999999999999965 45 899999999998855321100 00000000 0000
Q ss_pred ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
......+.+.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus 69 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 69 KFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred hcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 001122346678899999999999999999999999999998899999999999875
No 96
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=2.2e-11 Score=98.98 Aligned_cols=110 Identities=19% Similarity=0.303 Sum_probs=90.9
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
..+++.+++++.+|++.|.+++.+.++|+++ +| +++|+++.+|+++.+..... ..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~~--------~~----------- 57 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDE---NG---RLLGTVTDGDIRRALLKGLS--------LD----------- 57 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECC---CC---CEEEEEEcHHHHHHHhcCCC--------cC-----------
Confidence 3567899999999999999999999999965 45 89999999999875432110 01
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
..+.++|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|++.
T Consensus 58 -~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 58 -DPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred -CCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 1234557778889999999999999999999999999998899999999999863
No 97
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=1.3e-11 Score=100.55 Aligned_cols=109 Identities=14% Similarity=0.240 Sum_probs=87.2
Q ss_pred CcEEeCCCCCHHHHHHHHHhCC-ccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 268 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~-v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 268 (413)
++.++.+++++.+|++.|.+++ .+.+||+|+ +| +++|+++.+|+++...... ...
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~---------~~~--------- 57 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN---EG---RYVGIISLADLRAIPTSQW---------AQT--------- 57 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcC---CC---cEEEEEEHHHHHHHHHhhc---------ccc---------
Confidence 5778999999999999997775 889999965 45 7999999999988543210 011
Q ss_pred ccccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 269 WVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 269 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
.+.++|.. ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++.+|+++
T Consensus 58 ---~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 58 ---TVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred ---chhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 12333542 3568999999999999999999999999998899999999999864
No 98
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=1.8e-11 Score=98.69 Aligned_cols=105 Identities=18% Similarity=0.263 Sum_probs=89.6
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
++.++.+++++.+|+..|.+++.+.+||+++ +| +++|+++..+++... ...
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-------------~~~---------- 53 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE---KN---KVVGIVTSKDVAGKD-------------PDT---------- 53 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECC---CC---eEEEEecHHHHhccc-------------ccc----------
Confidence 5788999999999999999999999999965 45 899999999997510 011
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
.+.++|..++.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus 54 --~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 54 --TIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred --cHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 233447677889999999999999999999999999998899999999999864
No 99
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.34 E-value=6.5e-12 Score=104.33 Aligned_cols=113 Identities=15% Similarity=0.225 Sum_probs=91.6
Q ss_pred CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 268 (413)
Q Consensus 189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 268 (413)
++++++.+++++.+|++.|.+++++.+||+++ +| +++|+++.+++++.+...... ..
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~Gii~~~dl~~~~~~~~~~-------~~---------- 58 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE---SG---KILGMVTLGNLLSSLSSGKVQ-------PS---------- 58 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHHhccC-------CC----------
Confidence 36788999999999999999999999999965 45 799999999998755432110 11
Q ss_pred ccccccccCCCCceEecCCCCHHHHHHHHH---------hCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 015103 269 WVPRIGEANGRPFAMLRPTASLGSALALLV---------QADVSSIPIVDDNDSLLDIYSRSDITAL 326 (413)
Q Consensus 269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~---------~~~~~~lpVvd~~g~lvGiit~~dl~~~ 326 (413)
.+++++|.+++.++.+++++.++.+++. +.+...+||++++|+++|++|++|++.+
T Consensus 59 --~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 59 --DPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred --CcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 2456669999999999999999999653 3367788899888999999999999874
No 100
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.34 E-value=1e-11 Score=125.98 Aligned_cols=107 Identities=16% Similarity=0.190 Sum_probs=92.3
Q ss_pred ceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcc
Q 015103 281 FAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG 357 (413)
Q Consensus 281 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~ 357 (413)
.+++.+++++.+|+++|.+++++.+||+|+ +|+++|++|..|+.... . ..+.++.+
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~--~------~~~~~V~d------------- 165 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR--M------SLDTKVKD------------- 165 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc--c------CCCCCHHH-------------
Confidence 358999999999999999999999999996 58999999999986421 0 11356776
Q ss_pred cCCC--cceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 358 FNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 358 ~m~~--~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
+|++ +++++.+++++.+|++.|.+++++.||||| ++++++|+||+.||++.
T Consensus 166 IMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD-~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 166 FMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVD-KNGNLVYLVFRKDYDSH 218 (502)
T ss_pred HhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEhHHHHhc
Confidence 5554 688999999999999999999999999999 58999999999999885
No 101
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.34 E-value=3.5e-11 Score=98.08 Aligned_cols=111 Identities=24% Similarity=0.428 Sum_probs=93.5
Q ss_pred CCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCc
Q 015103 277 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 356 (413)
Q Consensus 277 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~ 356 (413)
|.+.+.++.++.++.+|...|.++++..+||++ .++++|++|.+|+.+....+.... .++.+
T Consensus 5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~-~~~l~Giit~~di~~~~~~~~~~~-----~~v~~------------ 66 (117)
T COG0517 5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVD-DGKLVGIITERDILRALAAGGKRL-----LPVKE------------ 66 (117)
T ss_pred ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHhccCCcc-----ccHHH------------
Confidence 446788999999999999999999999999997 348999999999999765332211 02444
Q ss_pred ccCCCcceEEeCCCCHHHHHHHHhc-CCCCEEEEEeCCCC-eEEEEEehHHHH
Q 015103 357 GFNGQRCQMCLRSDPLHKVMERLAN-PGVRRLVIVEAGSK-RVEGIISLSDVF 407 (413)
Q Consensus 357 ~~m~~~~~~v~~~~sl~~~~~~m~~-~~~~~l~VVd~~~~-~liGvIS~~DIl 407 (413)
+|..++.++.+++++.++++.|.. ++++++||++ +++ +++|++|.+|++
T Consensus 67 -v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~-~~~~~lvGivt~~di~ 117 (117)
T COG0517 67 -VMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVD-DDGGKLVGIITLSDIL 117 (117)
T ss_pred -hccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEE-CCCCeEEEEEEHHHcC
Confidence 666688999999999999999999 7999999999 465 999999999974
No 102
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=1.7e-11 Score=99.80 Aligned_cols=114 Identities=18% Similarity=0.285 Sum_probs=90.3
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
+++++.+++++.+|++.|.+++++.+||+|+ +| +++|+++.+++++++...... ... .+ +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~-----~~~-----~~----~ 61 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK---EG---KYVGTISLTDILWKLKGLENL-----DLE-----RL----V 61 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC---CC---cEEEEEeHHHHHHHhhccCch-----hHH-----HH----h
Confidence 4788999999999999999999999999964 45 899999999999876432111 000 00 0
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
...+.++|.+++.++.+++++.+|++.|.+.+ .+||+|++|+++|++|.+|++.
T Consensus 62 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 62 DLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred CCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 12345568888999999999999999998754 5999998899999999999875
No 103
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=3.2e-11 Score=97.62 Aligned_cols=110 Identities=19% Similarity=0.361 Sum_probs=91.6
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
++..+.+++++.+|++.|.+.+.+.+||+++ +| +++|+++..++++++..... ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~l~~~~~~~~~--------~~----------- 56 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP---DE---RPIGIVTERDIVRAVAAGID--------LD----------- 56 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---CEEEEeeHHHHHHHHhccCC--------Cc-----------
Confidence 4678999999999999999999999999965 35 89999999999886543210 01
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
..+.++|.+++.++.+++++.++++.|.+++...+||++++|+++|++|.+|+++
T Consensus 57 -~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 57 -TPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred -cCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 1233457778899999999999999999999999999998899999999999864
No 104
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.34 E-value=2.9e-11 Score=98.56 Aligned_cols=111 Identities=18% Similarity=0.368 Sum_probs=91.0
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
++..+.+++++.+|++.|.+.+.+.+||+|+ .| +++|+++.+|+++.+...... ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~~~-------~~----------- 57 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDR---DG---GVVGIITLPDLLRALEADEAG-------EP----------- 57 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC---CC---CEEEEEEHHHHHHHHhccccc-------cc-----------
Confidence 4568899999999999999999999999965 45 899999999998855321100 00
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGiit~~dl~~ 325 (413)
..+.++|.+++.++.+++++.+++++|.+++...+||+|++ |+++|++|.+|++.
T Consensus 58 -~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 58 -SAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred -ccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 11334577788999999999999999999999999999876 79999999999875
No 105
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.33 E-value=1e-11 Score=120.51 Aligned_cols=118 Identities=15% Similarity=0.173 Sum_probs=99.3
Q ss_pred CCCCCCCC--cEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccc
Q 015103 183 NGRPCPRP--LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 260 (413)
Q Consensus 183 ~~~~~~~~--~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~ 260 (413)
++++|.++ ++++++++++.+|++.|.+++...+||+|+ +| +++|+++..|+.+.+.... .
T Consensus 199 V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~---~g---~~iG~vt~~dl~~~~~~~~--------~---- 260 (321)
T PRK11543 199 VHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA---QQ---QVQGVFTDGDLRRWLVGGG--------A---- 260 (321)
T ss_pred HHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEecHHHHHHHHhCCC--------C----
Confidence 34568887 999999999999999999999999999975 56 8999999999987543210 0
Q ss_pred ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 015103 261 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL 326 (413)
Q Consensus 261 i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~ 326 (413)
....++++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|++|++|++++
T Consensus 261 --------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 261 --------LTTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred --------cCCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 0123556688899999999999999999999999999999988999999999999863
No 106
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.33 E-value=2e-11 Score=124.02 Aligned_cols=111 Identities=14% Similarity=0.152 Sum_probs=96.5
Q ss_pred CCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCC
Q 015103 277 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN 353 (413)
Q Consensus 277 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~ 353 (413)
|.++++++.+++++.+++++|.+++++.+||+|+ +|+++|++|.+|+..... .+.++.+
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~---------~~~~V~e--------- 167 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVND---------RETKLSE--------- 167 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccc---------cCCcHHH---------
Confidence 5678899999999999999999999999999986 489999999999965321 1356776
Q ss_pred CCcccCCCc--ceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103 354 PSLGFNGQR--CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 410 (413)
Q Consensus 354 ~~~~~m~~~--~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l 410 (413)
+|.++ ++++.+++++.+|++.|.+++.+.+|||| ++++++|+||++||++++
T Consensus 168 ----IMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD-~~g~LvGvITr~DIlk~~ 221 (505)
T PLN02274 168 ----VMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVN-EDGELVDLVTRTDVKRVK 221 (505)
T ss_pred ----HhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHHHh
Confidence 45444 78999999999999999999999999999 589999999999999886
No 107
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.33 E-value=1.3e-11 Score=116.51 Aligned_cols=113 Identities=17% Similarity=0.292 Sum_probs=96.4
Q ss_pred ccccccCCCC-ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcC
Q 015103 271 PRIGEANGRP-FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG 349 (413)
Q Consensus 271 ~~v~~~m~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~ 349 (413)
.+++++|.++ +.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+....+.. .+.++.+
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~~-----~~~~v~~----- 224 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGS-----LKSEVRD----- 224 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCCc-----ccCcHHH-----
Confidence 3677889888 9999999999999999999999999999988999999999999885432111 1245665
Q ss_pred CCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEe
Q 015103 350 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS 402 (413)
Q Consensus 350 ~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS 402 (413)
+|.+++.++.+++++.+|++.|.+.+.+++||+| ++|+++|+|+
T Consensus 225 --------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~l~GvI~ 268 (268)
T TIGR00393 225 --------FMTLGPKTFKLDALLLEALEFLERRKITSLVVVD-DHNKVLGVLH 268 (268)
T ss_pred --------hCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEEC-CCCeEEEEEC
Confidence 5666788999999999999999999999999999 5789999985
No 108
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.33 E-value=1.4e-11 Score=124.06 Aligned_cols=114 Identities=12% Similarity=0.160 Sum_probs=97.7
Q ss_pred ccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCC
Q 015103 273 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 352 (413)
Q Consensus 273 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~ 352 (413)
+.++|.++++++.+++++.+++++|.+++++.+||+| +++++|++|.+|+.... . ..++.+
T Consensus 90 v~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~~~~-------~---~~~V~d-------- 150 (475)
T TIGR01303 90 SRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLLGVD-------R---FTQVRD-------- 150 (475)
T ss_pred hhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhhcCC-------C---CCCHHH--------
Confidence 3455777889999999999999999999999999998 57999999999984321 0 134555
Q ss_pred CCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 353 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 353 ~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
+|+.+++++.+++++.+|++.|.+++++++|||| ++|+++|+||.+||+++..
T Consensus 151 -----IMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD-~~g~LvGIIT~~DLl~~~~ 203 (475)
T TIGR01303 151 -----IMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVD-ADGTLAGILTRTGALRATI 203 (475)
T ss_pred -----HccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHHHHh
Confidence 6777899999999999999999999999999999 5899999999999998653
No 109
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.32 E-value=3.3e-11 Score=97.78 Aligned_cols=111 Identities=19% Similarity=0.349 Sum_probs=92.1
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
++.++.+++++.++++.|.+.+.+.+||+++ +| +++|+++..++++++...... ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~i~~~~~~~~~~-------~~----------- 58 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE---DG---RLVGIFTDGDLRRALEKGLDI-------LT----------- 58 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcC---CC---CEEEEechHHHHHHHhccCcc-------cc-----------
Confidence 4667899999999999998888999999975 45 899999999999866432211 00
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
..+.++|.++..++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus 59 -~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 59 -LPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred -CCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 1244557778889999999999999999999999999998899999999999875
No 110
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.32 E-value=1.8e-11 Score=123.44 Aligned_cols=114 Identities=17% Similarity=0.318 Sum_probs=98.3
Q ss_pred cccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCC
Q 015103 274 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ 350 (413)
Q Consensus 274 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~ 350 (413)
++.|.+++.++.+++++.+++++|.+++++++||+|++ ++++|+++.+|+..... .+.++.+
T Consensus 83 ~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~---------~~~~V~d------ 147 (450)
T TIGR01302 83 ENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD---------KGKPVSE------ 147 (450)
T ss_pred cCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc---------CCCCHHH------
Confidence 34466788999999999999999999999999999987 79999999999975321 0245666
Q ss_pred CCCCCcccCC-CcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103 351 DANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 410 (413)
Q Consensus 351 ~~~~~~~~m~-~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l 410 (413)
+|. .+++++++++++.++++.|.+++.+.+||+| ++|+++|+||+.||++.+
T Consensus 148 -------vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVD-e~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 148 -------VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVD-KNGELVGLITMKDIVKRR 200 (450)
T ss_pred -------hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEc-CCCcEEEEEEhHHhhhcc
Confidence 555 3788999999999999999999999999999 689999999999999875
No 111
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=4.1e-11 Score=102.01 Aligned_cols=126 Identities=19% Similarity=0.301 Sum_probs=92.0
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhh-hhc------ccCcccHHHHHhc----
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQI------HLDEMNIHQALQL---- 348 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~-~~~------~l~~~~v~~~l~~---- 348 (413)
+++++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+++.+..... ... .....++.++++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 4678999999999999999999999999997 999999999999886542210 000 0000111111000
Q ss_pred ---CCCCCCCcc-cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 349 ---GQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 349 ---~~~~~~~~~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
......++. +|..++.++..++++.+++..|.+.+.+++||++ + |+++|+||..|+++
T Consensus 81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE-D-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHhhc
Confidence 000011122 5667889999999999999999999999999999 4 89999999999975
No 112
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=3.4e-11 Score=99.54 Aligned_cols=123 Identities=21% Similarity=0.347 Sum_probs=94.3
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
++.++.++.++.+|+++|.+++.+.+||+++ ++| +++|+++..++++++......... . ... . ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~--~~~---~~~G~v~~~dl~~~~~~~~~~~~~--~-~~~-~----~~~~ 68 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDE--GTG---KLVGIITATDILKYLGGGEKFNKI--K-TGN-G----LEAI 68 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeC--CCC---EEEEEEEHHHHHHHhhccchhccc--c-ccc-c----chhh
Confidence 5678899999999999999999999999965 226 899999999999876532111000 0 000 0 0001
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
...+.++|.++++++.+++++.++++.|.+.+.+.+||++++|+++|+||..|+++
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 12345567778999999999999999999999999999997799999999999875
No 113
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.31 E-value=1.7e-11 Score=123.93 Aligned_cols=117 Identities=14% Similarity=0.239 Sum_probs=100.0
Q ss_pred ccccccCCCCceEecCCCCHHHHHHHHHh-----CCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHH
Q 015103 271 PRIGEANGRPFAMLRPTASLGSALALLVQ-----ADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA 345 (413)
Q Consensus 271 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~-----~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~ 345 (413)
.+++++|++++.++.+++++.++++.|.+ ++...++|+|++++++|+++.+|++... .+.++++
T Consensus 131 ~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~----------~~~~v~~- 199 (449)
T TIGR00400 131 DSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAK----------PEEILSS- 199 (449)
T ss_pred chHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCC----------CCCcHHH-
Confidence 35777899999999999999999999975 4567889999899999999999986521 1235665
Q ss_pred HhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 346 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 346 l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
+|.++++++++++++.+|++.|.+++...+|||| ++|+++|+||..|+++.+.
T Consensus 200 ------------im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD-~~g~lvGiIt~~Dil~~l~ 252 (449)
T TIGR00400 200 ------------IMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD-NEGRLVGIVTVDDIIDVIQ 252 (449)
T ss_pred ------------HhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc-CCCeEEEEEEHHHHHHHHH
Confidence 5566788999999999999999999999999999 5899999999999998874
No 114
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.31 E-value=1.1e-11 Score=115.59 Aligned_cols=116 Identities=17% Similarity=0.251 Sum_probs=103.2
Q ss_pred ccccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103 271 PRIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 348 (413)
Q Consensus 271 ~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~ 348 (413)
..+.++|. ....++..++++.+-.++..+.+.+++||+|...+++|++|.+|+..... +.++..
T Consensus 188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~----------~t~ieK---- 253 (432)
T COG4109 188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKP----------STTIEK---- 253 (432)
T ss_pred eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCC----------CccHHH----
Confidence 35667777 56788999999999999999999999999999999999999999987322 245544
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103 349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 410 (413)
Q Consensus 349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l 410 (413)
+|++++.++.+.+|+..+.++|.=.++.-+||+| ++.+++|+||++|+++.+
T Consensus 254 ---------VMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~-~n~~llGiitR~dvlk~l 305 (432)
T COG4109 254 ---------VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVD-SNNTLLGIITRQDVLKSL 305 (432)
T ss_pred ---------HhccCCeeecccchHHHHHHHHHhccceeeeEEc-CCceEEEEEEHHHHHHHH
Confidence 7888999999999999999999999999999999 699999999999999987
No 115
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=4.6e-11 Score=97.80 Aligned_cols=113 Identities=17% Similarity=0.250 Sum_probs=88.8
Q ss_pred CceEecCCCCHHHHHHHHHhCC-CCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103 280 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 358 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 358 (413)
++.++.+++++.++++.|.+.+ .+.+||+|+ |+++|+++..++............ ..+.++.+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~~-~~~~~v~~-------------~ 66 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRAL-YGKKPVSE-------------V 66 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHHH-HcCCcHHH-------------h
Confidence 4567899999999999998877 889999998 999999999999875442110000 01234554 5
Q ss_pred CCCcceEEeCCCCHHHHHHHHhcCCCC---EEEEEeCCCCeEEEEEehHHHHH
Q 015103 359 NGQRCQMCLRSDPLHKVMERLANPGVR---RLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 359 m~~~~~~v~~~~sl~~~~~~m~~~~~~---~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
|..++.++.+++++.++++.|.+++.+ ..+||+ ++|+++|+||..|+++
T Consensus 67 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~-~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 67 MDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVT-EEGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEe-eCCeEEEEEEHHHHhc
Confidence 666788999999999999999998864 346888 4799999999999986
No 116
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.30 E-value=2.5e-11 Score=123.71 Aligned_cols=116 Identities=22% Similarity=0.378 Sum_probs=100.3
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 351 (413)
Q Consensus 272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~ 351 (413)
.+++.|.+++.++.+++++.+++++|.+++++.+||+|++++++|+++.+|+..... . ..++.+
T Consensus 88 ~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~------~---~~~V~d------- 151 (486)
T PRK05567 88 RSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETD------L---SQPVSE------- 151 (486)
T ss_pred hhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhccc------C---CCcHHH-------
Confidence 345668889999999999999999999999999999999999999999999864211 0 235555
Q ss_pred CCCCcccCC-CcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103 352 ANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 410 (413)
Q Consensus 352 ~~~~~~~m~-~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l 410 (413)
+|. ++++++.+++++.++++.|.+++++.+||+| ++|+++|+||..||++.+
T Consensus 152 ------im~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVD-e~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 152 ------VMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVD-DNGRLKGLITVKDIEKAE 204 (486)
T ss_pred ------HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEhHHhhhhh
Confidence 454 5788999999999999999999999999999 689999999999999875
No 117
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.30 E-value=4.2e-11 Score=96.33 Aligned_cols=100 Identities=22% Similarity=0.344 Sum_probs=86.4
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCc
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 356 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~ 356 (413)
....+.+++++.++.+.|.+.+...+||+|+ +|+++|+++..|+......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~--------------------------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN--------------------------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------------
Confidence 3567899999999999999988899999997 6899999999999774431
Q ss_pred ccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 357 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 357 ~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
+|..++.++.+++++.++++.|.+++.+.+||++ +|+++|+||+.|++++
T Consensus 56 -~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 56 -YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLKA 105 (105)
T ss_pred -hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhcC
Confidence 1223577899999999999999999999999997 5899999999999874
No 118
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=2.8e-11 Score=98.24 Aligned_cols=112 Identities=24% Similarity=0.316 Sum_probs=91.3
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
++.++.+++++.+|++.|.+++.+.+||+++ ++ +++|+++..++++.+....... . .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~-----~------------~ 58 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD---NG---NLVGFLSEQDCLKQLLESSYHC-----D------------G 58 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECC---CC---eEEEEeehHHHHHHhhhhhhcc-----C------------C
Confidence 5678999999999999999989999999965 45 8999999999998664321000 0 0
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
...+.++|..++.++.+++++.++++.|.+++.+.+||+|+ |+++|++|.+|+++
T Consensus 59 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 11344557778889999999999999999999999999986 99999999999875
No 119
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=4e-11 Score=96.99 Aligned_cols=109 Identities=15% Similarity=0.277 Sum_probs=90.0
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
++..+++++++.+|++.|.+++.+.+||+++ .| +++|+++..+++.+..... ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~--------~~~~---------- 57 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN---EE---KLKGVVTFTDILDLDLFES--------FLEK---------- 57 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcC---CC---CEEEEEehHHhHHHHhhcc--------cccC----------
Confidence 5678999999999999999999999999965 45 8999999999987532110 0011
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
.+.++|.+++.++.+++++.++++.|.+++...+||+++ |+++|++|..|++.
T Consensus 58 --~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 58 --KVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred --cHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 234457778899999999999999999999999999987 99999999999863
No 120
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.30 E-value=2e-11 Score=118.69 Aligned_cols=117 Identities=16% Similarity=0.166 Sum_probs=97.4
Q ss_pred CCCCCCC--CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccc
Q 015103 183 NGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 260 (413)
Q Consensus 183 ~~~~~~~--~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~ 260 (413)
++++|.+ +++++.+++++.+|++.|.+++.+.+||+++ +| +++|++|.+|+.+.+....
T Consensus 204 V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~---~g---~lvGivt~~Dl~~~~~~~~------------- 264 (326)
T PRK10892 204 VSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD---NM---KIEGIFTDGDLRRVFDMGI------------- 264 (326)
T ss_pred HHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC---CC---cEEEEEecHHHHHHHhcCC-------------
Confidence 4567876 8999999999999999999998888888864 56 8999999999987432110
Q ss_pred ccccccccc-cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 015103 261 VSSIQLGTW-VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL 326 (413)
Q Consensus 261 i~~l~i~~~-~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~ 326 (413)
.| ...++++|.+++.++.+++++.+|++.|.+++++.+||++ +|+++|++|++|+++.
T Consensus 265 -------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 265 -------DLRQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred -------CcccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 01 1245677999999999999999999999999999999997 6899999999999873
No 121
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.30 E-value=5.8e-11 Score=96.28 Aligned_cols=111 Identities=14% Similarity=0.244 Sum_probs=90.4
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
+...+.+++++.+|++.|.+.+.+.+||+++ +| +++|+++.+++++.+.... ....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~dl~~~~~~~~-------~~~~----------- 57 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDD---KK---RLVGIITRYDVLSYALESE-------ELKD----------- 57 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcC---CC---CEEEEEEHHHHHHhhhhhh-------hhcC-----------
Confidence 3567899999999999999999999999975 45 7999999999987432210 0001
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
..+.++|..++.++.+++++.++++.|.+++...+||+|++|+++|+++..|++.
T Consensus 58 -~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 58 -AKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred -CcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 1234457778899999999999999999999999999998899999999999864
No 122
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.30 E-value=5.7e-11 Score=97.38 Aligned_cols=120 Identities=19% Similarity=0.288 Sum_probs=93.5
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
++.++.+++++.+|++.|.+.+...+||+++ | +++|+++..+++++......... ..+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~i~~~~l~~~~~~~~~~~~---------~~~~~~~~~ 65 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR----G---KLVGIVTDRDLKLASPSKATTLD---------IWELYYLLS 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC----C---eEEEEEeHHHHHHhhhccccccc---------chhhhhhhc
Confidence 5678999999999999999999999999963 4 79999999999986543211100 000000001
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
...+.++|.+++.++.+++++.++++.|.+.+.+.+||++++|+++|++|..|+++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 66 KIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred ccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 12355667788999999999999999999999999999998899999999999875
No 123
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.29 E-value=6e-11 Score=95.40 Aligned_cols=106 Identities=20% Similarity=0.334 Sum_probs=89.6
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
++..+.++.++.+|+..|.+++...+||+++ +| +++|+++..|+++.... ..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~------------~~---------- 54 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK---DN---KLLGIVSLESLEQAYKE------------AK---------- 54 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcC---CC---cEEEEEEHHHHHHHhhc------------CC----------
Confidence 5678899999999999999999999999965 45 89999999999874311 01
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
.+.++|...+.++.+++++.++++.|.+++...+||++++|+++|++|.+|+++
T Consensus 55 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 55 --SLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred --cHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 123346677889999999999999999999999999998899999999999864
No 124
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.29 E-value=6.3e-11 Score=95.75 Aligned_cols=109 Identities=16% Similarity=0.241 Sum_probs=88.7
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
+++++.+++++.+|++.|.+++.+.+||+++ ++| +++|+++..+++++...... ..+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~--~~~---~~~G~v~~~~l~~~~~~~~~---------~~~--------- 58 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDG--DLD---NIIGVVHVKDLLRALAEGEE---------DLD--------- 58 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECC--CCc---eEEEEEEHHHHHHHHHcCCC---------cCC---------
Confidence 4678999999999999999999999999965 125 89999999999986532110 011
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
+.+++ +++.++.+++++.++++.|.+++.+.+||+|++|+++|++|++|++.
T Consensus 59 ---~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 59 ---LRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred ---HHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 11223 35788999999999999999999999999998899999999999864
No 125
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=4.8e-11 Score=99.95 Aligned_cols=125 Identities=19% Similarity=0.362 Sum_probs=93.6
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCC---Cccc-c-ccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS---SLPI-L-QQPVSSI 264 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~---~~~~-~-~~~i~~l 264 (413)
+++++.+++++.+|++.|.+++++++||+|+ +| +++|+++..++++++......... .... . +.....+
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~---~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN---EG---RVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKL 75 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECC---CC---CEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHH
Confidence 5678999999999999999999999999965 45 899999999999876532111000 0000 0 0000000
Q ss_pred ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 265 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 265 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
....+.++|.+++..+.+++++.+++++|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus 76 ----~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 76 ----LGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred ----cCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 011355667788899999999999999999999999999997 99999999999875
No 126
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=3.2e-11 Score=101.40 Aligned_cols=130 Identities=18% Similarity=0.316 Sum_probs=94.3
Q ss_pred CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc--cc-
Q 015103 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS--IQ- 265 (413)
Q Consensus 189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~--l~- 265 (413)
+++.++.+++++.+|++.|.+++.+++||+++ .| +++|+++..++++++...+................ ..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~---~~---~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDD---DG---RLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAF 75 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECC---CC---CEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHH
Confidence 46788999999999999999999999999965 45 89999999999875533211000000000000000 00
Q ss_pred cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 266 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 266 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
.......+.++|.+++.++.+++++.++++.|.+.+.+.+||+| +|+++|++|+.|+++
T Consensus 76 ~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 76 VRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred HHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 00011245566878899999999999999999999999999999 899999999999864
No 127
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.29 E-value=7e-11 Score=96.19 Aligned_cols=110 Identities=19% Similarity=0.327 Sum_probs=86.9
Q ss_pred CcEEeCCCCCHHHHHHHHHhCC-ccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 268 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~-v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 268 (413)
++.++.+++++.+|++.|.+++ ...++|.+ .| +++|+++..|+++++..... ....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~-------~~~~--------- 58 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE----KG---RLLGIFTERDIVRLTAIGKD-------LSDL--------- 58 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC----CC---cEEEEEeHHHHHHHHhcCCC-------cccc---------
Confidence 4567899999999999998888 56677764 25 79999999999985532100 0011
Q ss_pred ccccccccCCCCceEecCC--CCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 269 WVPRIGEANGRPFAMLRPT--ASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 269 ~~~~v~~~m~~~~~~v~~~--~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
.+.++|.+++.++.++ +++.++++.|.+++...+||+|++|+++|++|++|+++
T Consensus 59 ---~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 59 ---PIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred ---CHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 2344577778888887 68999999999999999999998899999999999875
No 128
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.28 E-value=9.4e-11 Score=94.56 Aligned_cols=108 Identities=22% Similarity=0.424 Sum_probs=89.9
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
+++.+.+++++.+|++.|.+++++.+||+++ | +++|+++..++++....... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~~l~~~~~~~~~---------~----------- 54 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD----G---KLVGIVTLSDIAHAIARGLE---------L----------- 54 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhcccc---------c-----------
Confidence 5778999999999999999999999999953 4 79999999999885422100 0
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
..+.++|..++.++.+++++.++++.|.+.+...+||++++|+++|+++..|+++
T Consensus 55 -~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 -AKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred -cCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 1233446678899999999999999999999999999998899999999999864
No 129
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.28 E-value=6.2e-11 Score=99.99 Aligned_cols=129 Identities=16% Similarity=0.222 Sum_probs=94.2
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccC-CCCCcccc---cccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKH-SSSSLPIL---QQPVSSIQ 265 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~-~~~~~~~~---~~~i~~l~ 265 (413)
++.++.+++++.+|++.|.+++.+.+||+|+ +| +++|+++..++++++...... .......+ ..+.....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD---NG---KPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRY 75 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECC---CC---CEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccc
Confidence 4678899999999999999999999999965 45 899999999999866421110 00000000 00000000
Q ss_pred cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 266 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 266 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
.......++++|.+++..+.+++++.++++.|.+++.+.+||+++ |+++|++|.+|+++
T Consensus 76 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 76 VKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 001122466778888899999999999999999999999999986 99999999999875
No 130
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=1e-10 Score=93.78 Aligned_cols=104 Identities=19% Similarity=0.366 Sum_probs=87.3
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 359 (413)
++.++.++.++.++++.|.+.+.+.+||++++++++|+++..++..... +.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~----------~~~~~~-------------~~ 58 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPE----------EEQLAL-------------LM 58 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccc----------cchHHH-------------Hh
Confidence 3567888999999999999889999999998899999999999875211 122333 34
Q ss_pred CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
..++.++..++++.++++.|.+++.+.+||+| + |+++|+||..|+++
T Consensus 59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~-~~~~G~it~~d~~~ 105 (106)
T cd04638 59 TRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-D-GKLVGIVTVADIVR 105 (106)
T ss_pred cCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHhhc
Confidence 45688899999999999999999999999999 3 79999999999975
No 131
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.27 E-value=8e-11 Score=95.36 Aligned_cols=111 Identities=25% Similarity=0.381 Sum_probs=92.0
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
++.++.+++++.+|++.|.+++++.+||+++ +| +++|+++..++++++.... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~--------~~~----------- 56 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD---DG---RLVGIVSLDDIREILFDPS--------LYD----------- 56 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECC---CC---CEEEEEEHHHHHHHHhccc--------ccc-----------
Confidence 5678999999999999999999999999965 35 7999999999988653210 000
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~dl~~ 325 (413)
...+.++|.+++.++.+++++.++++.|.+.+.+.+||+++ .|+++|+++..|++.
T Consensus 57 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 02344557888999999999999999999999999999987 799999999999864
No 132
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.27 E-value=1.2e-10 Score=93.84 Aligned_cols=109 Identities=22% Similarity=0.394 Sum_probs=90.7
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
++..+.+++++.+|++.|.+++.+.+||+++ | +++|+++.++++++...... +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~~l~~~~~~~~~--------------------~ 54 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD----G---RPLGIVTERDILRLLASGPD--------------------L 54 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEeHHHHHHHHhcCCC--------------------C
Confidence 4678999999999999999989999999963 4 89999999999886532110 0
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
...++++|.+++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++
T Consensus 55 ~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 55 QTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 12244457778889999999999999999999999999998899999999999864
No 133
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.27 E-value=8.7e-11 Score=94.92 Aligned_cols=109 Identities=20% Similarity=0.370 Sum_probs=90.0
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
++.+++++.++.+|++.|.+++.+.+||+++ + +++|+++..++++.+.... ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~----~---~~~G~v~~~~l~~~~~~~~-------~~~~----------- 56 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD----G---RLVGIVTDRDLRNRVVAEG-------LDPD----------- 56 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC----C---EEEEEEEhHHHHHHHhccC-------CCcc-----------
Confidence 5678999999999999999999999999963 4 8999999999987543210 0001
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
..+.++|..++.++.+++++.++++.|.+++.+.+||+++ |+++|++|.+|+++
T Consensus 57 -~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 57 -TPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred -CCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 1244557778999999999999999999999999999986 99999999999875
No 134
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.27 E-value=1.1e-10 Score=94.12 Aligned_cols=108 Identities=19% Similarity=0.394 Sum_probs=90.1
Q ss_pred CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 268 (413)
Q Consensus 189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 268 (413)
++++++++++++.+|++.|.+++...+||+++ | +++|+++..++++.+.... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~dl~~~~~~~~---------~~~--------- 56 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG----G---RVVGIISRRDVEKALRHGL---------GHA--------- 56 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC----C---EEEEEEEHHHHHHHHhccc---------ccC---------
Confidence 36788999999999999999989999999963 4 7999999999987542210 111
Q ss_pred ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
.+.++|.+++.++.+++++.+++++|.+++.+.+||++ +|+++|++|..|++.
T Consensus 57 ---~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 57 ---PVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ---cHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 23445777889999999999999999999999999998 799999999999864
No 135
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.26 E-value=1.4e-10 Score=94.40 Aligned_cols=112 Identities=26% Similarity=0.472 Sum_probs=95.0
Q ss_pred CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccc
Q 015103 186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 265 (413)
Q Consensus 186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~ 265 (413)
.|.+.++++.++.++.+|+..|.++++..+||++. + +++|++|.+|+++.+........
T Consensus 4 ~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~----~---~l~Giit~~di~~~~~~~~~~~~-------------- 62 (117)
T COG0517 4 IMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD----G---KLVGIITERDILRALAAGGKRLL-------------- 62 (117)
T ss_pred cccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhccCCccc--------------
Confidence 34578999999999999999999999999999964 2 69999999999997654322100
Q ss_pred cccccccccccCCCCceEecCCCCHHHHHHHHHh-CCCCEEEEEcCCC-cEEEEEeHHHHH
Q 015103 266 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQ-ADVSSIPIVDDND-SLLDIYSRSDIT 324 (413)
Q Consensus 266 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~-~~~~~lpVvd~~g-~lvGiit~~dl~ 324 (413)
.+.++|.+++.++.+++++.++.+.|.+ ++++.+||+++++ +++|++|..|++
T Consensus 63 ------~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 63 ------PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred ------cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 2455578789999999999999999999 7999999999886 999999999873
No 136
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.25 E-value=1.1e-10 Score=94.97 Aligned_cols=109 Identities=17% Similarity=0.251 Sum_probs=87.1
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
+++++.+++++.+|++.|.+++...+||+|+...+| +++|+++..+++... . ...
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~---~~~G~v~~~dl~~~~-~-----------~~~---------- 57 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG---KLLGIVTSRDIDFLT-D-----------SET---------- 57 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC---EEEEEEEhHHhhhhh-c-----------cCC----------
Confidence 467889999999999999999999999996421135 899999999986411 0 001
Q ss_pred cccccccCCCCceEecC--CCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRP--TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~--~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
.++++|.....++.. ++++.++++.|.+++...+||+|++|+++|++|.+|++.
T Consensus 58 --~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 58 --PLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred --CHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 233447666667766 999999999999999999999998899999999999864
No 137
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.25 E-value=8.1e-11 Score=119.62 Aligned_cols=118 Identities=14% Similarity=0.237 Sum_probs=96.9
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 351 (413)
Q Consensus 272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~ 351 (413)
+++++|.+++.++.+++++.++++.|.+++++.+||+|++++++|+++..|+++.+..+... .+.++.+
T Consensus 336 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~----~~~~v~~------- 404 (454)
T TIGR01137 336 TVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKAN----PDDAVSK------- 404 (454)
T ss_pred CHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCCC----cCCCHHH-------
Confidence 57788999999999999999999999999999999999889999999999998855422110 0235555
Q ss_pred CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103 352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 410 (413)
Q Consensus 352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l 410 (413)
+|..++.++++++++.++++.|.+++ .+||+ ++++++|+||++||+++|
T Consensus 405 ------im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~-~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 405 ------VMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVT-EEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred ------hcCCCCeEECCcCcHHHHHHHHHHCC---eeEEE-ECCEEEEEEEHHHHHHhh
Confidence 55567889999999999999998764 35555 368999999999999986
No 138
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.25 E-value=1.6e-10 Score=93.60 Aligned_cols=111 Identities=14% Similarity=0.202 Sum_probs=90.0
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
+++.+.+++++.+|++.|.+++.+.+||+++ | +++|+++.+++++.+...... ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~dl~~~~~~~~~~------~~~~---------- 58 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG----N---KLVGIFTSKDIALRVVAQGLD------PEST---------- 58 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC----C---EEEEEEEhHHHHHHHHhcCCC------cCcC----------
Confidence 5678899999999999999999999999963 4 799999999998644321100 0001
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
.+.++|.+++.++.+++++.++++.|.+++...+||++++|+++|+++..|++.
T Consensus 59 --~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 59 --LVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred --CHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 234457778889999999999999999999999999998899999999999864
No 139
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=1.2e-10 Score=96.90 Aligned_cols=124 Identities=15% Similarity=0.269 Sum_probs=92.1
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
+++.+.+++++.+|+++|.+.+.+.+||+++ +| +++|++|..++.+++........ ........ -...
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~dl~~~~~~~~~~~~-----~~~~~~~~-~~~~ 69 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDD---NG---KLTGIVTRHDIVDFVVRDRDKAR-----TGDRSGEK-ERML 69 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECC---CC---cEEEEEEHHHHHHHHhhhhhhcc-----hhhhhhhh-hhhc
Confidence 4678899999999999999999999999975 45 89999999999876532110000 00000000 0001
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEc--CCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGiit~~dl~~ 325 (413)
...+.++|.++++++.+++++.++++.|.+.+...+||++ ++|+++|+||++|++.
T Consensus 70 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 70 DLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred cCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 1235566888899999999999999999999999999984 4689999999999864
No 140
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=1.7e-10 Score=93.31 Aligned_cols=110 Identities=17% Similarity=0.364 Sum_probs=88.3
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
.+.++.+++++.+|++.|.+++.+.++|.+ +| +++|+++.+++++++...... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~~------~~~----------- 57 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME----RG---ELVGLLTFREVLQAMAQHGAG------VLD----------- 57 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee----CC---EEEEEEEHHHHHHHHHhcCCc------hhc-----------
Confidence 467889999999999999888887777764 35 899999999999865421000 001
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
..+.++|..++.++.+++++.++++.|.+++...+||++ +|+++|++|.+|+++
T Consensus 58 -~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 58 -TTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred -CCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 124455777888999999999999999999999999998 599999999999875
No 141
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.25 E-value=2.8e-10 Score=114.85 Aligned_cols=165 Identities=17% Similarity=0.230 Sum_probs=119.6
Q ss_pred CeeeceeCCCCeEEEEeehHHHHHHHHHhccCC---CCCCHHHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeC
Q 015103 119 PMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAG 195 (413)
Q Consensus 119 ~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 195 (413)
..+|++.+. ..-+|..++..++......+ .+++.++-.. ..+.... ....|.++++++.
T Consensus 33 l~~p~~s~~----mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~~----~V~~Vk~----------~~~~~~~~~vtl~ 94 (450)
T TIGR01302 33 LNIPILSSP----MDTVTESRMAIAMAREGGIGVIHRNMSIEEQAE----QVKRVKR----------AENGIISDPVTIS 94 (450)
T ss_pred cCCCeeecC----CCccCHHHHHHHHHhcCCCceeecCCCHHHHHH----HHhhhcc----------ccCceecCceEeC
Confidence 457888653 23468888888877665432 2222222111 1111111 1235677899999
Q ss_pred CCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccccccccc
Q 015103 196 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 275 (413)
Q Consensus 196 ~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~ 275 (413)
+++++.+|+++|.+++++++||++++...+ +++|+++.+|++... .... .+.+
T Consensus 95 ~~~tv~eal~~m~~~~~s~lpVvd~~~~~~---~lvGIVt~rDL~~~~------------~~~~------------~V~d 147 (450)
T TIGR01302 95 PETTVADVLELMERKGISGIPVVEDGDMTG---KLVGIITKRDIRFVK------------DKGK------------PVSE 147 (450)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCCCCCC---eEEEEEEHHHHhhhh------------cCCC------------CHHH
Confidence 999999999999999999999997521114 899999999996411 0011 2445
Q ss_pred cCC-CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 276 ANG-RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 276 ~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
+|. .+++++.+++++.++++.|.+++...+||+|++|+++|++|.+|++....
T Consensus 148 vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 148 VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 577 48999999999999999999999999999999999999999999998643
No 142
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.25 E-value=6.3e-11 Score=120.37 Aligned_cols=113 Identities=19% Similarity=0.184 Sum_probs=96.8
Q ss_pred ccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103 275 EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 351 (413)
Q Consensus 275 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~ 351 (413)
..|..+++++.+++++.+++++|.+++++.+||+|++ ++++|+++.+|+..... .+.++.+
T Consensus 100 ~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~---------~~~~V~d------- 163 (495)
T PTZ00314 100 NGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKD---------KSTPVSE------- 163 (495)
T ss_pred cccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhccc---------CCCCHHH-------
Confidence 3466788899999999999999999999999999863 89999999999873211 1345666
Q ss_pred CCCCcccCCC--cceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103 352 ANPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 410 (413)
Q Consensus 352 ~~~~~~~m~~--~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l 410 (413)
+|.+ ++.++.+++++.+++++|.+++.+.+||+| ++++++|+||++||++..
T Consensus 164 ------iMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd-~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 164 ------VMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVN-DNGELVALVSRSDLKKNR 217 (495)
T ss_pred ------hhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEc-CCCcEEEEEEehHhhhcc
Confidence 5554 788999999999999999999999999999 589999999999999764
No 143
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24 E-value=1.4e-10 Score=92.64 Aligned_cols=102 Identities=19% Similarity=0.394 Sum_probs=86.5
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
++..+.+++++.++++.|.+++.+.+||+++ + +++|+++.+++++.. ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~Giv~~~~l~~~~-------------~~~---------- 51 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED----G---KLVGIITSRDVRRAH-------------PNR---------- 51 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEehHHhhccc-------------ccC----------
Confidence 4678899999999999999999999999953 4 799999999997611 011
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT 324 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~ 324 (413)
.+.++|..++.++.+++++.++++.|.+++...+||+|+ |+++|++|.+|++
T Consensus 52 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 52 --LVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred --CHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 133447778899999999999999999999999999996 9999999999986
No 144
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.24 E-value=3e-10 Score=108.17 Aligned_cols=164 Identities=15% Similarity=0.218 Sum_probs=120.8
Q ss_pred hhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhh
Q 015103 82 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET 161 (413)
Q Consensus 82 l~~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~ 161 (413)
|..+++.|+|-.-.+++.++.+.|+.++++.+.+++.+..||++.+.++++|+++..|++..+.. .....
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~---~~~~~------- 133 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS---DAEAF------- 133 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhc---cCCcC-------
Confidence 35679999998767899999999999999999999999999999776789999999999865421 10010
Q ss_pred ccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHH
Q 015103 162 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 241 (413)
Q Consensus 162 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~ 241 (413)
.+.. +|. +++++.+++++.++++.|.+++.+.+||+|+ .| .++|+||.+||+.
T Consensus 134 -~l~~-------------------l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe---~G---~viGiVTleDIle 186 (292)
T PRK15094 134 -SMDK-------------------VLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE---FG---GVSGLVTIEDILE 186 (292)
T ss_pred -CHHH-------------------HcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC---CC---CEEEEeEHHHHHH
Confidence 1111 233 4558999999999999999999999999975 45 7999999999999
Q ss_pred HHHhhccCCCCCcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHH
Q 015103 242 CICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 297 (413)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m 297 (413)
.+......... ......+..+ ......+....++.+..+.+
T Consensus 187 ~ivGei~de~d--~~~~~~i~~~-------------~~~~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 187 LIVGEIEDEYD--EEDDIDFRQL-------------SRHTWTVRALASIEDFNEAF 227 (292)
T ss_pred HHhCCCccccc--cccccccEEe-------------CCCeEEEEeccCHHHHHHHh
Confidence 88754332110 0000112222 12344678888888888776
No 145
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=1e-10 Score=95.99 Aligned_cols=119 Identities=19% Similarity=0.426 Sum_probs=92.5
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
+++++.+++++.+|++.|.+++.+.+||+++ | +++|+++..++++++........ ..........
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~----~---~~~G~v~~~~l~~~~~~~~~~~~--~~~~~~~~~~------ 66 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG----G---KLVGIVTEKDIADALRSFRPLVR--DRHQERRIRN------ 66 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC----C---EEEEEEchHHHHHhhhhhhhccc--chhhhhhhhc------
Confidence 5778999999999999999999999999963 5 89999999999986643221100 0000011111
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
..+.++|..++.++.+++++.+++++|.+.+.+.+||+|+ |+++|+++..|+++
T Consensus 67 -~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 67 -LPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred -cCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 1344557778999999999999999999999999999997 99999999999874
No 146
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.24 E-value=4.4e-11 Score=118.14 Aligned_cols=120 Identities=18% Similarity=0.302 Sum_probs=104.7
Q ss_pred CCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccc
Q 015103 183 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS 262 (413)
Q Consensus 183 ~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~ 262 (413)
+++.+..+.+++++..++.+|+..|.++|++.+.+++. ++ ...||+|.+|+.+.+....+.
T Consensus 151 v~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~---~~---~~~GIvT~~dl~~~v~~~g~~------------- 211 (610)
T COG2905 151 VGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD---SG---PLLGIVTRKDLRSRVIADGRS------------- 211 (610)
T ss_pred HHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC---CC---CccceeehHHHHHHHHhcCCC-------------
Confidence 35578899999999999999999999999999989875 45 799999999999977653322
Q ss_pred ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 263 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 263 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
...+|+++|+.+++++..++.+.+|+-+|.++++.++||++ +|+++|++|..||+++..
T Consensus 212 ------~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 212 ------KTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFS 270 (610)
T ss_pred ------cccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhC
Confidence 11356777999999999999999999999999999999996 799999999999999766
No 147
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.24 E-value=9.5e-11 Score=116.43 Aligned_cols=122 Identities=17% Similarity=0.264 Sum_probs=106.3
Q ss_pred cccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhC-----CccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCC
Q 015103 177 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS 251 (413)
Q Consensus 177 ~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~-----~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~ 251 (413)
+|.++.+|+.|...++++.++.|+.+|+..+++. .+..+.|+|. ++ ++.|+++.++++.
T Consensus 128 ~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~---~~---~L~Gvvsl~~Ll~---------- 191 (451)
T COG2239 128 SYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE---KG---KLLGVVSLRDLLT---------- 191 (451)
T ss_pred CCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECC---cc---ceEEEeeHHHHhc----------
Confidence 3899999999999999999999999999999854 4688999976 55 8999999999875
Q ss_pred CCcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103 252 SSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 329 (413)
Q Consensus 252 ~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~ 329 (413)
..... .++++|.+.++++.+++..+++.+.+.+++.-++||||++++++|++|..|++..+.+
T Consensus 192 ---a~~~~------------~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~e 254 (451)
T COG2239 192 ---AEPDE------------LLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEE 254 (451)
T ss_pred ---CCcHh------------HHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHH
Confidence 11122 3455588889999999999999999999999999999999999999999999997653
No 148
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.24 E-value=1.2e-10 Score=118.25 Aligned_cols=111 Identities=17% Similarity=0.215 Sum_probs=92.0
Q ss_pred cEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccccc
Q 015103 191 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 270 (413)
Q Consensus 191 ~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~ 270 (413)
..++++++|+.+|+++|.+++++.+||+|+..++| +++|++|..|+... . ...+
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g---kLvGIVT~~DLr~~-----~------~~~~------------ 160 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG---KLLGIVTSRDYRIS-----R------MSLD------------ 160 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC---EEEEEEEcHHhhcc-----c------cCCC------------
Confidence 36899999999999999999999999997421245 89999999998531 0 0111
Q ss_pred ccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103 271 PRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 327 (413)
Q Consensus 271 ~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~ 327 (413)
..++++|++ +++++.+++++.+|+++|.++++..+||+|++|+++|+||++|+++..
T Consensus 161 ~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 161 TKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred CCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 235556875 788999999999999999999999999999889999999999998843
No 149
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=1.1e-10 Score=96.01 Aligned_cols=120 Identities=22% Similarity=0.396 Sum_probs=92.6
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
+++++.+++++.+|++.|.+++.+.+||+|+ .| +++|+++..++++.......... ..... ..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~---~~~~~-------~~~ 65 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK---AG---ELIGIITRRDIIRAGSVRTSVED---QQRTQ-------TKA 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEcHHHHhhccccccccc---hhhhh-------hhc
Confidence 5788999999999999999999999999965 45 89999999999874211100000 00000 001
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
...+.++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 66 SPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred cCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 12345667788899999999999999999999999999998899999999999875
No 150
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.23 E-value=2e-10 Score=92.96 Aligned_cols=111 Identities=20% Similarity=0.340 Sum_probs=89.4
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
+++++.+++++.+|.+.|.+++.+.+||+++ | +++|+++..+++..+.. ... . . .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~i~~~~l~~~~~~--~~~----~-~-----------~ 56 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN----D---RLVGIVTDRDIVVRAVA--EGR----D-P-----------D 56 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEhHHHHHHHhh--ccC----C-c-----------c
Confidence 5678999999999999999999999999963 5 89999999998732211 000 0 0 0
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
...+.++|...+.++.+++++.++++.|.+.+.+++||++++|+++|+++..|+++
T Consensus 57 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 57 TTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred cCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 01244557778889999999999999999999999999998899999999999865
No 151
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=1.8e-10 Score=94.76 Aligned_cols=120 Identities=23% Similarity=0.324 Sum_probs=94.4
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
+++++.+++++.+|++.|.+++++.+||+++ | +++|+++..++.+.+........ ....+ ...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~~~~~~~~-------~~~~~--~~~~ 65 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED----N---ELVGVISDRDYLKAISPFLGTAG-------ETEKD--LATL 65 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC----C---eEEEEEEHHHHHHHHHHHhcccc-------chHHH--HHHH
Confidence 5678999999999999999999999999963 4 79999999999987654321100 00000 0111
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
...+.++|..+++++.+++++.++++.|.+++...+||+|++|+++|+++..|++.
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 66 NRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred HhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 12355667788999999999999999999999999999998899999999999875
No 152
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.23 E-value=3.2e-10 Score=115.21 Aligned_cols=115 Identities=19% Similarity=0.190 Sum_probs=96.2
Q ss_pred CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccc
Q 015103 186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 265 (413)
Q Consensus 186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~ 265 (413)
.+..+++++.+++++.+|+++|.+++++.+||++++..++ +++|++|.+|+.. . ....
T Consensus 101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g---kLvGIVt~~DL~~-~-----------~~~~------- 158 (495)
T PTZ00314 101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG---KLLGIVTSRDIDF-V-----------KDKS------- 158 (495)
T ss_pred ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC---eEEEEEEHHHHhh-c-----------ccCC-------
Confidence 4567889999999999999999999999999997522235 8999999999863 1 0011
Q ss_pred cccccccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103 266 LGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 327 (413)
Q Consensus 266 i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~ 327 (413)
..+.++|++ +++++.+++++.+|+++|.+++...+||+|++++++|+||++|+++..
T Consensus 159 -----~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 159 -----TPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred -----CCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 234556876 789999999999999999999999999999999999999999999854
No 153
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.23 E-value=2.7e-10 Score=92.15 Aligned_cols=110 Identities=21% Similarity=0.386 Sum_probs=89.4
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
++..+.+++++.+|++.|.+.+.+.+||+++ + +++|+++..++++++...... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~~------~~~----------- 57 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN----E---KPVGIITERDLVKKVVSRNLK------PRE----------- 57 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC----C---EEEEEEEHHHHHHHHhhccCC------ccc-----------
Confidence 4678899999999999999999999999964 3 799999999999865421100 001
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
..+.++|.+++.++.+++++.++++.|.+++...+||+|++ +++|+++.+|+++
T Consensus 58 -~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 58 -VPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred -CCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 12345577788899999999999999999999999999865 9999999999864
No 154
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=8.3e-11 Score=97.70 Aligned_cols=115 Identities=15% Similarity=0.131 Sum_probs=86.1
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHh--hccCCCCCcccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR--HFKHSSSSLPILQQPVSSIQLG 267 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~--~~~~~~~~~~~~~~~i~~l~i~ 267 (413)
+++++.+++++.+|++.|.+++.+.+||+++ .| +++|+++..|+.+.... ..... .....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~---~~~~~--------- 63 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS---DD---NFIGVITAVDLLGEEPIKRIQEGG---ISRSE--------- 63 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEHHHHhhChhhHHHHHcC---CCchh---------
Confidence 4678999999999999999999999999975 45 89999999999862210 00000 00001
Q ss_pred cccccccccCCCCceEe------cCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHH
Q 015103 268 TWVPRIGEANGRPFAML------RPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITA 325 (413)
Q Consensus 268 ~~~~~v~~~m~~~~~~v------~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~ 325 (413)
..+.++|.++...+ .+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+++
T Consensus 64 ---~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 64 ---LTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred ---eEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 12445576554333 368899999999999999999999986 79999999999875
No 155
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.23 E-value=1.2e-10 Score=94.02 Aligned_cols=102 Identities=16% Similarity=0.253 Sum_probs=84.2
Q ss_pred eCCCCCHHHHHHHHHhCC-----ccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103 194 AGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 268 (413)
Q Consensus 194 v~~~~sl~ea~~~m~~~~-----v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 268 (413)
+.+++++.++++.|.+++ +..+||+++ +| +++|+++.+++++. . ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~~l~~~------------~-~~---------- 52 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE---EG---RLLGVVSLRDLLLA------------D-PD---------- 52 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECC---CC---CEEEEEEHHHHhcC------------C-Cc----------
Confidence 568899999999998777 478999964 45 79999999998651 0 01
Q ss_pred ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 015103 269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL 326 (413)
Q Consensus 269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~ 326 (413)
..++++|.+++..+.+++++.++++.|.+++...+||+|++|+++|++|..|+++.
T Consensus 53 --~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 53 --TPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred --chHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 12344577788999999999999999999999999999988999999999999863
No 156
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.22 E-value=2.8e-10 Score=91.71 Aligned_cols=109 Identities=23% Similarity=0.376 Sum_probs=90.3
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
+++.+.+++++.+|++.|.+.+.+.+||+++ | +++|+++..|+++....... . .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~---------~----~------ 55 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD----G---RLVGIVTLADIRRVPAEGRE---------A----T------ 55 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC----C---eEEEEEEHHHHHHHHhcCcc---------c----c------
Confidence 5788999999999999999999999999963 4 79999999999875432100 0 0
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
..+.+.|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 56 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 56 -VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred -cCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 1233447778999999999999999999999999999998899999999999865
No 157
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.22 E-value=3.9e-10 Score=112.39 Aligned_cols=161 Identities=16% Similarity=0.179 Sum_probs=121.6
Q ss_pred hhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhhc
Q 015103 83 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 162 (413)
Q Consensus 83 ~~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~ 162 (413)
++.++.|+|-+-.+++.++.+.|+.++++.+.+++.+..||++.+..+++|+++..|++..+. . .. .
T Consensus 189 ~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~---~--~~--------~ 255 (408)
T TIGR03520 189 GNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN---K--KN--------F 255 (408)
T ss_pred CCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc---c--CC--------C
Confidence 468899999888899999999999999999999999999999987778999999999985332 1 00 0
Q ss_pred cHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHH
Q 015103 163 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 242 (413)
Q Consensus 163 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~ 242 (413)
.+.. +| +++.++++++++.++++.|.+++.+.++|+|+ .| ...|++|.+||+..
T Consensus 256 ~l~~-------------------~~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE---~G---~~~GiVT~eDilee 309 (408)
T TIGR03520 256 DWQS-------------------LL-REPYFVPENKKLDDLLRDFQEKKNHLAIVVDE---YG---GTSGLVTLEDIIEE 309 (408)
T ss_pred CHHH-------------------Hc-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcC---CC---CEEEEEEHHHHHHH
Confidence 1111 22 35789999999999999999999999999975 45 79999999999998
Q ss_pred HHhhccCCCCCcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHH
Q 015103 243 ICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLV 298 (413)
Q Consensus 243 l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~ 298 (413)
+........ ......+..+ ......+....++.++.+.|.
T Consensus 310 ivgei~de~---d~~~~~i~~~-------------~~~~~~v~G~~~l~~l~~~l~ 349 (408)
T TIGR03520 310 IVGDISDEF---DDEDLIYSKI-------------DDNNYVFEGKTSLKDFYKILK 349 (408)
T ss_pred HhCCCCCcC---CcCccceEEe-------------CCCeEEEEeccCHHHHHHHhC
Confidence 864322211 0001111111 123456777889999888873
No 158
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.22 E-value=1.6e-10 Score=93.04 Aligned_cols=107 Identities=20% Similarity=0.310 Sum_probs=86.6
Q ss_pred CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 268 (413)
Q Consensus 189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 268 (413)
+++..+.+++++.++++.|.+++...+||+++ .| +++|+++.++++... ....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~------------~~~~--------- 54 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDD---DG---KLVGIVTNRDLRFET------------DLDK--------- 54 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcC---CC---EEEEEEEhhHeeecc------------cCCC---------
Confidence 35778999999999999999999999999965 45 899999999986410 0011
Q ss_pred ccccccccCCCCceEecC-CCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 269 WVPRIGEANGRPFAMLRP-TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 269 ~~~~v~~~m~~~~~~v~~-~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
.+.++|...+..+.+ ++++.++++.|.+.+.+.+||+|++|+++|+++.+|++.
T Consensus 55 ---~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 55 ---PVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred ---CHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 233446555566666 999999999999999999999998899999999999864
No 159
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.21 E-value=3e-10 Score=91.05 Aligned_cols=105 Identities=20% Similarity=0.431 Sum_probs=88.1
Q ss_pred CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 268 (413)
Q Consensus 189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 268 (413)
++++++.++.++.++++.|.+++...+||+++ + +++|+++..+++.. . ...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~----~---~~~g~v~~~~l~~~------~-------~~~--------- 52 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN----G---KVVGIVSARDLLGK------D-------PDE--------- 52 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC----C---EEEEEEEHHHhhcc------C-------ccc---------
Confidence 45788999999999999998888889999953 4 89999999998751 0 011
Q ss_pred ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
.++++|...+.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus 53 ---~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 53 ---TVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred ---cHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 234457777889999999999999999999999999998899999999999874
No 160
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.21 E-value=1.9e-10 Score=117.00 Aligned_cols=115 Identities=14% Similarity=0.185 Sum_probs=96.7
Q ss_pred CCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccc
Q 015103 187 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 266 (413)
Q Consensus 187 ~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i 266 (413)
|.++++++.+++++.+|+++|.+++++.+||+|++...| +++|++|.+|+... ....
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~G---klvGIVT~~DL~~v------------~~~~-------- 162 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGS---KLLGYVTKRDWDFV------------NDRE-------- 162 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCC---eEEEEEEHHHHhhc------------cccC--------
Confidence 678899999999999999999999999999996411135 89999999998641 0011
Q ss_pred ccccccccccCCCC--ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 267 GTWVPRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 267 ~~~~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
..+.++|+++ ++++.+++++.+|+++|.+++...+||+|++++++|+||++|+++...
T Consensus 163 ----~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 163 ----TKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKG 222 (505)
T ss_pred ----CcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 2345568766 789999999999999999999999999998999999999999998665
No 161
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.20 E-value=4.8e-10 Score=89.80 Aligned_cols=111 Identities=23% Similarity=0.456 Sum_probs=91.4
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
++.++.+++++.++++.|.+++.+.+||+++ ++ +++|+++.+++++++........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~------------------ 57 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD---DG---RLVGIVTERDLLRALAEGGLDPL------------------ 57 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECC---CC---CEEEEEeHHHHHHHHHhccCCcc------------------
Confidence 4678899999999999999999999999965 35 89999999999987654221100
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
..+.++|..++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|++.
T Consensus 58 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 58 -VTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred -ccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 0023346677888999999999999999999999999998899999999999864
No 162
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.19 E-value=4.1e-10 Score=91.01 Aligned_cols=109 Identities=14% Similarity=0.234 Sum_probs=88.7
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
+++++.+++++.+|++.|.+++...++|+++ | +++|+++..++++.+.... ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~~~~-------~~~~----------- 56 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG----D---PRLGIVTRTDLLDAVLLDG-------LPSS----------- 56 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC----C---eEEEEEEHHHHHHHHHcCC-------CCCC-----------
Confidence 4678899999999999999999999999953 4 7999999999987543210 0001
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
..+.++|.+++..+.+++++.++++.|.+++...+||+|+ |+++|++|..|++.
T Consensus 57 -~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 57 -TPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred -CCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 1234457778889999999999999999999999999984 89999999999875
No 163
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.17 E-value=4.4e-10 Score=90.34 Aligned_cols=108 Identities=19% Similarity=0.381 Sum_probs=86.5
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
+++++.+++++.+|++.|.+++++.+||+++ | +++|+++..++.+++...... ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~dl~~~~~~~~~~-------~~----------- 56 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD----G---RVVGSIDESDLLDALIEGKAK-------FS----------- 56 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC----C---eeEEEEeHHHHHHHHhccccc-------cC-----------
Confidence 5678999999999999999999999999963 4 799999999999865432110 01
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
..+.++|.+++.++.+++++.+++++|.+ . ..+||++++|+++|++|.+|+++
T Consensus 57 -~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 57 -LPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred -cCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 12334477778899999999999999987 3 34788988899999999999875
No 164
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.16 E-value=2.1e-10 Score=119.72 Aligned_cols=120 Identities=16% Similarity=0.254 Sum_probs=99.1
Q ss_pred CCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103 184 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 263 (413)
Q Consensus 184 ~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~ 263 (413)
+++|.++..++++++++.++++.|.+++.+.+||+|+ ++ +++|+++.+|+.+.+...... ..
T Consensus 450 ~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~---~g---~lvGiVt~~dL~~~l~~~~~~-------~~----- 511 (574)
T PRK01862 450 RELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD---DG---RFRGAVALKDITSDLLDKRDT-------TD----- 511 (574)
T ss_pred HHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC---CC---eEEEEEEHHHHHHHhhccccc-------cc-----
Confidence 4578888999999999999999999999999999975 45 899999999998744221000 00
Q ss_pred cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CcEEEEEeHHHHHHHHh
Q 015103 264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITALAK 328 (413)
Q Consensus 264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGiit~~dl~~~~~ 328 (413)
..+.++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|++|++|+++.+.
T Consensus 512 -------~~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 512 -------KTAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred -------chHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 13455688888999999999999999999999999999876 58999999999998654
No 165
>PRK11573 hypothetical protein; Provisional
Probab=99.16 E-value=4.3e-10 Score=112.14 Aligned_cols=122 Identities=12% Similarity=0.207 Sum_probs=99.5
Q ss_pred cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103 272 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 348 (413)
Q Consensus 272 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~ 348 (413)
+++++|.+ .+.+++.++++.++++.+.+++++++||.++ .+.++|++..+|++.....+.. .......+
T Consensus 188 ~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~-------~~~~~l~~- 259 (413)
T PRK11573 188 TVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE-------FTKENMLR- 259 (413)
T ss_pred ChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCc-------CCHHHHHh-
Confidence 56777854 6899999999999999999999999999975 3789999999999875432110 11121111
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
++ +++..++++.++.++++.|.+++.|-..|+| |.|...|+||..||++.++|
T Consensus 260 ---------~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD-EyG~~~GiVTleDilEeivG 312 (413)
T PRK11573 260 ---------AA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD-EYGDIQGLVTVEDILEEIVG 312 (413)
T ss_pred ---------hc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe-cCCCeEEEeeHHHHHHHHhC
Confidence 11 3678999999999999999999999999999 69999999999999999987
No 166
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.16 E-value=5.5e-10 Score=91.56 Aligned_cols=119 Identities=16% Similarity=0.292 Sum_probs=91.6
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
++.++++++++.+|++.|.+.+.+.+||+|+ +| +++|+++..++++.....+.... ...+ ...+
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~---------~~~~-~~~~ 65 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDE---EG---RLVGIVTDRDLRDASPSPFTTLS---------EHEL-YLLL 65 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEHHHHHHHhhhhcccch---------hhhh-hhhc
Confidence 5678899999999999999999999999975 45 89999999999875432211100 0000 0001
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
...+.++|..++.++.+++++.++++.|.+.+...+||+++ |+++|+++.+|+++
T Consensus 66 ~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 66 KMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred CcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 12344557778899999999999999999999999999986 99999999999864
No 167
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.15 E-value=4.4e-10 Score=94.57 Aligned_cols=109 Identities=21% Similarity=0.308 Sum_probs=79.7
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccC-------cccHHHHHhcCCCC
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD-------EMNIHQALQLGQDA 352 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~-------~~~v~~~l~~~~~~ 352 (413)
.+.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|+++............. ...+.++.....
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-- 79 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI-- 79 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh--
Confidence 46789999999999999999999999999989999999999999986543221110000 001122111000
Q ss_pred CCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeC
Q 015103 353 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA 392 (413)
Q Consensus 353 ~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~ 392 (413)
-++.|..+++++.+++++.+|++.|.+++++++||+|+
T Consensus 80 --~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 80 --SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred --hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 00123567889999999999999999999999999984
No 168
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.15 E-value=6.8e-10 Score=88.84 Aligned_cols=100 Identities=18% Similarity=0.291 Sum_probs=84.5
Q ss_pred EEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccccc
Q 015103 192 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP 271 (413)
Q Consensus 192 v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~ 271 (413)
+++.+++++.+|++.|.+.+.+.+||+++ | +++|+++..++++.. ..
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~--------------~~------------ 50 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY----N---KFLGAVYLKDIENAT--------------YG------------ 50 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC----C---EEEEEEEHHHHhhhc--------------cc------------
Confidence 56889999999999999999999999963 4 899999999987621 01
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
.+.++|.....++.+++++.++++.|.+++...+||++ +|+++|++|.+|++.
T Consensus 51 ~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 12233666788999999999999999999999999998 699999999999864
No 169
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.13 E-value=3.7e-10 Score=106.62 Aligned_cols=110 Identities=15% Similarity=0.232 Sum_probs=92.1
Q ss_pred CCCCCCC-cEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccc
Q 015103 184 GRPCPRP-LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS 262 (413)
Q Consensus 184 ~~~~~~~-~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~ 262 (413)
+++|.++ +..+.+++++.+|++.|.+.+++.+||+|+ +| +++|+++..|+++.+... ....
T Consensus 158 ~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~---~g---~~~Givt~~dl~~~~~~~--------~~~~---- 219 (268)
T TIGR00393 158 KDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE---NN---QLVGVFTDGDLRRALLGG--------GSLK---- 219 (268)
T ss_pred HHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC---CC---CEEEEEEcHHHHHHHhcC--------Cccc----
Confidence 4577777 999999999999999999999999999975 45 899999999998854210 0011
Q ss_pred ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEe
Q 015103 263 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS 319 (413)
Q Consensus 263 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit 319 (413)
..++++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|+|+
T Consensus 220 --------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 220 --------SEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred --------CcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 2345568888999999999999999999999999999998899999985
No 170
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.12 E-value=3.7e-10 Score=105.44 Aligned_cols=115 Identities=14% Similarity=0.246 Sum_probs=98.6
Q ss_pred CCCCCC--CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccc
Q 015103 183 NGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 260 (413)
Q Consensus 183 ~~~~~~--~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~ 260 (413)
++++|. .....+.+++++.+-.++-.+.+.+++||+|. .. +++|++|.+|++. ...+.+
T Consensus 190 Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~---~~---kvvGvVt~rDv~~-------------~~~~t~ 250 (432)
T COG4109 190 VEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR---SM---KVVGVVTMRDVLD-------------KKPSTT 250 (432)
T ss_pred HHHhccccccceeccccccHHHHHHHHHHcCCCccceecc---cc---eEEEEEEehhhhc-------------CCCCcc
Confidence 344565 67788999999999999999999999999976 44 8999999999976 122333
Q ss_pred ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 261 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 261 i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
+ ..+|++++.++.+.+++..+.++|.=.++.-+||+|++.+++|++|++|++..+.
T Consensus 251 i------------eKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq 306 (432)
T COG4109 251 I------------EKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred H------------HHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence 3 3349999999999999999999999999999999999999999999999998654
No 171
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12 E-value=1.1e-09 Score=93.29 Aligned_cols=126 Identities=25% Similarity=0.466 Sum_probs=95.1
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhcc-C---CCCCcccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK-H---SSSSLPILQQPVSSIQ 265 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~-~---~~~~~~~~~~~i~~l~ 265 (413)
+++++.+++++.+|++.|.+++++.+||+++ | +++|+++..++++++..... . .++.......++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~----~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 73 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG----G---KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREF- 73 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC----C---eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhe-
Confidence 5778999999999999999999999999963 4 79999999999987753321 0 000011111222111
Q ss_pred cccc-----------cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 266 LGTW-----------VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 266 i~~~-----------~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
..| ...+.++|..++.++.+++++.++++.|.+.+.+.+||+++ |+++|+++.+|++.
T Consensus 74 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 74 -INWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred -eehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 111 12355678888999999999999999999999999999986 99999999999863
No 172
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.11 E-value=1.2e-09 Score=87.71 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=85.9
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
....+.+++++.++.+.|.+.+...+||+++...+| +++|+++.+++.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~---~~~G~v~~~dl~~~~~~------------------------ 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESP---RLVGYILRSQLVVALKN------------------------ 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCC---EEEEEEeHHHHHHHHHH------------------------
Confidence 456789999999999999999889999996311035 89999999999874421
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
+|.+++.++.+++++.++++.|.+++.+.+||++ +|+++|++|++|++.
T Consensus 56 ------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 ------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred ------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 2556788999999999999999999999999995 789999999999875
No 173
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.06 E-value=3.2e-09 Score=85.01 Aligned_cols=104 Identities=21% Similarity=0.370 Sum_probs=85.6
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
++.++.+++++.+++..|.+.+.+.+||+++ .+ +++|+++.+++++. .. ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~g~v~~~~l~~~----~~---------~~---------- 52 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKK---SG---ELVGIITRKDLLRN----PE---------EE---------- 52 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEHHHHHhc----cc---------cc----------
Confidence 4678899999999999999989999999964 35 89999999998751 00 01
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
.+.++|..++.++..++++.++++.|.+++...+||+| +|+++|+++..|++.
T Consensus 53 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~ 105 (106)
T cd04638 53 --QLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVR 105 (106)
T ss_pred --hHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence 12233666788899999999999999999999999998 479999999999864
No 174
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.06 E-value=1.7e-09 Score=108.67 Aligned_cols=120 Identities=18% Similarity=0.326 Sum_probs=99.6
Q ss_pred cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEc-CCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103 272 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVD-DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 348 (413)
Q Consensus 272 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~ 348 (413)
.++++|. .++.++..+.++.++.+.+.+++++++||++ +.+.++|++..+|++.....+.. .. ....
T Consensus 207 ~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~~-----~~~~---- 276 (429)
T COG1253 207 TVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-DL-----DLRV---- 276 (429)
T ss_pred EeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-cc-----chhh----
Confidence 4555675 4688899999999999999999999999998 56799999999999996654321 11 1111
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
.. .+++.++++.++.+++++|.+.+.|-..|+| |.|.+.|+||..||++.++|
T Consensus 277 ---------~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD-EyG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 277 ---------LV-RPPLFVPETLSLSDLLEEFREERTHMAIVVD-EYGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred ---------cc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEE-cCCCeEEEeEHHHHHHHHhC
Confidence 11 2688999999999999999999999999999 69999999999999999987
No 175
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.03 E-value=2.6e-09 Score=87.32 Aligned_cols=113 Identities=12% Similarity=0.193 Sum_probs=87.6
Q ss_pred CcEEeCCCCCHHHHHHHHHhCC-ccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 268 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~-v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 268 (413)
++.++.+++++.+|++.|...+ .+.+||+++ | +++|+++..++++++...+.. ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~----~---~~~G~v~~~~l~~~~~~~~~~-----~~~----------- 58 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD----G---RPVGLIMREALMELLSTPYGR-----ALY----------- 58 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC----C---eeEEEEEHHHHHHHHhchhhH-----HHH-----------
Confidence 4567889999999999998877 899999963 4 799999999998755321100 000
Q ss_pred ccccccccCCCCceEecCCCCHHHHHHHHHhCCCC---EEEEEcCCCcEEEEEeHHHHHH
Q 015103 269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVS---SIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~---~lpVvd~~g~lvGiit~~dl~~ 325 (413)
....++++|..++.++.+++++.++++.|.+++.. ..+|++++|+++|++|..|+++
T Consensus 59 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 01135566888899999999999999999988753 4568888899999999999864
No 176
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.00 E-value=4.3e-09 Score=88.50 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=79.2
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCC-ccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS-LPILQQPVSSIQLGT 268 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~-~~~~~~~i~~l~i~~ 268 (413)
.++++.+++++.+|++.|.+++++.+||+|+ +| +++|++|..|+++++.......... ...+......+ ..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~---~g---~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v--~~ 73 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS---DD---FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLV--SS 73 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEEHHHHHHHHhhccccccccchhhcccccccH--HH
Confidence 4788999999999999999999999999975 45 8999999999999775421110000 00000000000 00
Q ss_pred cc--ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC
Q 015103 269 WV--PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN 311 (413)
Q Consensus 269 ~~--~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 311 (413)
.. ..+.+.|..+++++.+++++.+|+++|.+++++++||+|++
T Consensus 74 i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 74 VCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred HhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 00 01122345678899999999999999999999999999853
No 177
>PRK11573 hypothetical protein; Provisional
Probab=98.97 E-value=2.7e-08 Score=99.37 Aligned_cols=165 Identities=18% Similarity=0.204 Sum_probs=122.4
Q ss_pred hhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhhc
Q 015103 83 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 162 (413)
Q Consensus 83 ~~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~ 162 (413)
++.++.|+|-.-.+++.++.+.++.++++.+.+.+.+..||++.+..+++|++...|++..+.. . ...
T Consensus 185 ~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~---~-~~~-------- 252 (413)
T PRK11573 185 EKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE---K-KEF-------- 252 (413)
T ss_pred CCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhc---c-CcC--------
Confidence 5688999999999999999999999999999999999999999887889999999999864321 0 111
Q ss_pred cHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHH
Q 015103 163 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 242 (413)
Q Consensus 163 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~ 242 (413)
....+.+ ..+++..+++++++.++++.|.+++.+-+.|+|+ -| ...|+||..||+..
T Consensus 253 ~~~~l~~-----------------~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE---yG---~~~GiVTleDilEe 309 (413)
T PRK11573 253 TKENMLR-----------------AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE---YG---DIQGLVTVEDILEE 309 (413)
T ss_pred CHHHHHh-----------------hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec---CC---CeEEEeeHHHHHHH
Confidence 1111111 1357889999999999999999999999999976 55 79999999999998
Q ss_pred HHhhccCCCCCcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHH
Q 015103 243 ICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 297 (413)
Q Consensus 243 l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m 297 (413)
+......... ......+... ......+....++.++-+.+
T Consensus 310 ivGei~de~d--~~~~~~i~~~-------------~~~~~~v~G~~~l~d~~~~l 349 (413)
T PRK11573 310 IVGDFTTSMS--PTLAEEVTPQ-------------NDGSVIIDGTANVREINKAF 349 (413)
T ss_pred HhCCCCcccC--cccccceEEe-------------cCCEEEEEeeeEHHHHHHHh
Confidence 8754332110 0000111111 12234577778888877776
No 178
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.97 E-value=4.8e-09 Score=106.71 Aligned_cols=116 Identities=12% Similarity=0.210 Sum_probs=92.5
Q ss_pred CCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103 184 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 263 (413)
Q Consensus 184 ~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~ 263 (413)
+++|.+++.++.+++++.+|++.|.+++++.+||+|+ ++ +++|++|.+|+++.+..... ...
T Consensus 338 ~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~-------~~~----- 399 (454)
T TIGR01137 338 KDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE---AG---KVLGSVTLRELLSALFAGKA-------NPD----- 399 (454)
T ss_pred HHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHHhccCC-------CcC-----
Confidence 4578899999999999999999999999999999975 45 89999999999985532100 001
Q ss_pred cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103 264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 327 (413)
Q Consensus 264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~ 327 (413)
..+.++|.+++.++.+++++.+++++|.+++ .|+|+++|+++|+||++|++..+
T Consensus 400 -------~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 400 -------DAVSKVMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred -------CCHHHhcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 1244558888889999999999999998754 35555579999999999998753
No 179
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.95 E-value=3.8e-09 Score=105.06 Aligned_cols=116 Identities=17% Similarity=0.285 Sum_probs=100.5
Q ss_pred ccccccCCCCceEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHH
Q 015103 271 PRIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA 345 (413)
Q Consensus 271 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~ 345 (413)
.+++.+|+..++++.++.|+.+++..+++. ....+.|+|++++++|+++.++++..-. +..+.+
T Consensus 132 ~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~----------~~~i~~- 200 (451)
T COG2239 132 DTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEP----------DELLKD- 200 (451)
T ss_pred hhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCc----------HhHHHH-
Confidence 467778999999999999999999999843 4678999999999999999999876321 234555
Q ss_pred HhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103 346 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 410 (413)
Q Consensus 346 l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l 410 (413)
+|.+.++++.+++..+++.+.+.+++.-.+|||| ++++++|+||..|++..+
T Consensus 201 ------------im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd-~~~~LiG~itiDDiidvi 252 (451)
T COG2239 201 ------------LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD-EDNRLIGIITIDDIIDVI 252 (451)
T ss_pred ------------HhcccceeecccCCHHHHHHHHHHhCCeecceEC-CCCceeeeeeHHHHHHHH
Confidence 6777799999999999999999999999999999 699999999999998765
No 180
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.94 E-value=2.5e-09 Score=75.74 Aligned_cols=54 Identities=28% Similarity=0.409 Sum_probs=50.7
Q ss_pred cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 358 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 358 ~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+|.++++++++++++.++++.|.+++.+++||+| ++|+++|+||.+||+++++.
T Consensus 4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d-~~~~~~G~is~~dl~~~l~~ 57 (57)
T PF00571_consen 4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVD-EDGKLVGIISRSDLLKALLD 57 (57)
T ss_dssp HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEES-TTSBEEEEEEHHHHHHHHHG
T ss_pred CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe-cCCEEEEEEEHHHHHhhhhC
Confidence 6777899999999999999999999999999999 58999999999999999863
No 181
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=98.91 E-value=7.1e-10 Score=84.19 Aligned_cols=31 Identities=48% Similarity=0.809 Sum_probs=29.5
Q ss_pred CceEEEcCeeeeCCCCCcccCCCCCcceEEE
Q 015103 1 MYKFYVDGEWRHDENQPHVSGNYGVVNCVYI 31 (413)
Q Consensus 1 ~ykf~vdg~w~~~~~~~~~~~~~g~~~~~~~ 31 (413)
.|||+|||+|++||++|++.|++|+.||+|+
T Consensus 49 ~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~i~ 79 (79)
T cd02859 49 QYKFIVDGEWRHSPDLPTETDDEGNVNNVID 79 (79)
T ss_pred EEEEEECCEEEeCCCCCccCCCCCcEeeeEC
Confidence 3999999999999999999999999999984
No 182
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.90 E-value=4.7e-09 Score=74.29 Aligned_cols=55 Identities=31% Similarity=0.509 Sum_probs=51.3
Q ss_pred cccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 274 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 274 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
+++|.++++++.+++++.++++.|.+++++++||+|++|+++|++|.+|+++++.
T Consensus 2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 5678889999999999999999999999999999999999999999999998653
No 183
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.79 E-value=3.2e-08 Score=93.61 Aligned_cols=121 Identities=14% Similarity=0.289 Sum_probs=101.7
Q ss_pred cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhhhh-hhhcccCcccHHHHHh
Q 015103 272 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKA-YAQIHLDEMNIHQALQ 347 (413)
Q Consensus 272 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~dl~~~~~~~~-~~~~~l~~~~v~~~l~ 347 (413)
+|.|+|. ..+..+..+++..++.+.+....+.++|+..+ -+.++|++..+|+++++.++. +.. ..+..++
T Consensus 201 tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k-----~d~~~~a- 274 (423)
T COG4536 201 TVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTK-----EDILRAA- 274 (423)
T ss_pred eeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccH-----hHHHHHh-
Confidence 6777785 46888999999999999999999999999853 457999999999999876543 322 2233322
Q ss_pred cCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 348 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 348 ~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
..+++++.++++.+-+..|.+++-|.-.||| |.|.+.|+||+.||++.++|
T Consensus 275 -------------~epyFVPe~Tpl~~QL~~F~~~k~hialVVD-EYG~i~GLVTLEDIlEEIVG 325 (423)
T COG4536 275 -------------DEPYFVPEGTPLSDQLVAFQRNKKHIALVVD-EYGDIQGLVTLEDILEEIVG 325 (423)
T ss_pred -------------cCCeecCCCCcHHHHHHHHHHhcceEEEEEe-ccCcEEeeeeHHHHHHHHhc
Confidence 2578999999999999999999999999999 79999999999999999987
No 184
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.72 E-value=3.5e-08 Score=87.56 Aligned_cols=120 Identities=13% Similarity=0.341 Sum_probs=100.4
Q ss_pred ccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcC
Q 015103 273 IGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG 349 (413)
Q Consensus 273 v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~ 349 (413)
++++|. ...+++..+.++.+++..+.+...+++||+.+ .+.+.|++-..||+.++..... ...+.+.|
T Consensus 69 vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~------~F~i~~lL--- 139 (293)
T COG4535 69 VRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE------PFDIKELL--- 139 (293)
T ss_pred HhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc------cccHHHhc---
Confidence 445564 35788999999999999999999999999964 5689999999999997653321 13455544
Q ss_pred CCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhcC
Q 015103 350 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV 413 (413)
Q Consensus 350 ~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~~ 413 (413)
+|...++++-.+...++.|...+.|...||| +-|-+-|.||..||+..++|.
T Consensus 140 -----------RPav~VPESKrvd~lLkeFR~~RnHMAIViD-EfGgVsGLVTIEDiLEqIVGd 191 (293)
T COG4535 140 -----------RPAVVVPESKRVDRLLKEFRSQRNHMAIVID-EFGGVSGLVTIEDILEQIVGD 191 (293)
T ss_pred -----------ccceecccchhHHHHHHHHHhhcCceEEEEe-ccCCeeeeEEHHHHHHHHhcc
Confidence 3678899999999999999999999999999 699999999999999999873
No 185
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.67 E-value=3.8e-07 Score=89.50 Aligned_cols=110 Identities=16% Similarity=0.239 Sum_probs=90.5
Q ss_pred CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 358 (413)
Q Consensus 279 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 358 (413)
.......++.+..++++.|...+...+.|+|+++++.|.++..++....... .++.+ .
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~-------------~ 307 (363)
T TIGR01186 250 TGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKA---------QGLQD-------------V 307 (363)
T ss_pred ccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcC---------Cchhh-------------h
Confidence 3344566777899999999999999999999999999999999987755421 12333 2
Q ss_pred CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 359 m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+.....++.++++|.+++..|.+++.. +||+| ++|+++|+||+.+++++|.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 308 LIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVD-EDQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred hccCCceECCCCcHHHHHHHHHhCCCC-EEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence 223567899999999999999999998 99999 58999999999999999864
No 186
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.66 E-value=9.1e-07 Score=89.11 Aligned_cols=129 Identities=19% Similarity=0.320 Sum_probs=107.2
Q ss_pred hhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhhc
Q 015103 83 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 162 (413)
Q Consensus 83 ~~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~ 162 (413)
.++++-++|-....++.++.+.++.++.+.+.+.+.+..||++....+++|++...|++..+..... ..
T Consensus 204 ~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---~~-------- 272 (429)
T COG1253 204 DDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---DL-------- 272 (429)
T ss_pred CCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---cc--------
Confidence 5788999999999999999999999999999999999999999777889999999999965542210 00
Q ss_pred cHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHH
Q 015103 163 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 242 (413)
Q Consensus 163 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~ 242 (413)
... ..-++++.+++.+++.++++.|++.+.|-..|+|+ -| ...|++|..||+..
T Consensus 273 ~~~--------------------~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE---yG---~~~GlVTleDIiEe 326 (429)
T COG1253 273 DLR--------------------VLVRPPLFVPETLSLSDLLEEFREERTHMAIVVDE---YG---GVEGLVTLEDIIEE 326 (429)
T ss_pred chh--------------------hcccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc---CC---CeEEEeEHHHHHHH
Confidence 000 01237899999999999999999999999999986 45 79999999999998
Q ss_pred HHhhcc
Q 015103 243 ICRHFK 248 (413)
Q Consensus 243 l~~~~~ 248 (413)
+.....
T Consensus 327 IvGei~ 332 (429)
T COG1253 327 IVGEIP 332 (429)
T ss_pred HhCCCc
Confidence 876443
No 187
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.61 E-value=8.8e-07 Score=84.65 Aligned_cols=169 Identities=17% Similarity=0.196 Sum_probs=120.7
Q ss_pred HHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCC---CCCCHHHHhhccHHHHHHHHHhhhccccCCCCCCCCCC
Q 015103 113 LYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPR 189 (413)
Q Consensus 113 l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (413)
|..+.....|++.+ ...-+|..+..-.+..+.-.+ .+.+.++- ...+..|+..+.. ...
T Consensus 55 ltr~itl~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctpe~Q-A~~v~~vK~~~~g-------------~~~ 116 (503)
T KOG2550|consen 55 LTRNITLNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTPEDQ-ADMVRRVKNYENG-------------FIN 116 (503)
T ss_pred hhhcccccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCHHHH-HHHHHHHHHhhcc-------------ccc
Confidence 33444556688765 345577778877766554221 23343332 2234556554432 234
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
+++.+.|+.++.++++.-..++...+||.... ..| .+++|++|-+||-. +.++ ..
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g-~~~--~KLvG~vtsrdi~f-~~~~-----------~~---------- 171 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDG-KRG--SKLVGIITSRDIQF-LEDN-----------SL---------- 171 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCC-ccc--ceeEEEEehhhhhh-hhcc-----------cc----------
Confidence 67789999999999999999999999999642 223 38999999999843 3110 11
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL 326 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~ 326 (413)
-+.++|.+..++.....++.++-+++.+++...+||||++|+++.++++.||.+.
T Consensus 172 --~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 172 --LVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred --hhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 2345587777889999999999999999999999999999999999999999873
No 188
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=7.2e-07 Score=88.57 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=86.9
Q ss_pred ecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccCCCcc
Q 015103 284 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRC 363 (413)
Q Consensus 284 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~~~~ 363 (413)
..++.+..++++.|...+.+.+.|+|++++++|+++..++......+ .++.+++ ....
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~-------------~~~~ 347 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQ---------QGLDAAL-------------IDAP 347 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhcC---------Cchhhhh-------------ccCC
Confidence 34667889999999999999999999999999999999997754321 1233322 2356
Q ss_pred eEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 364 QMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 364 ~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
.++.++++|.+++..|..+... +|||| ++|+++|+||..++++.|.+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 348 LAVDAQTPLSELLSHVGQAPCA-VPVVD-EDQQYVGIISKGMLLRALDR 394 (400)
T ss_pred ceeCCCCCHHHHHHHHHhCCCc-EEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence 7899999999999999998776 99999 58999999999999999854
No 189
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.53 E-value=2.3e-07 Score=92.85 Aligned_cols=148 Identities=20% Similarity=0.362 Sum_probs=112.1
Q ss_pred ccccccccccc-------cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC-----CCcEEEEEeHHHHHHHHh
Q 015103 261 VSSIQLGTWVP-------RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD-----NDSLLDIYSRSDITALAK 328 (413)
Q Consensus 261 i~~l~i~~~~~-------~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~g~lvGiit~~dl~~~~~ 328 (413)
++.+++-.|.+ +++++|+.++++++.-+.+..+.+.+....+..+||||+ .+++.|+|-++.++.+++
T Consensus 565 LkgvP~Le~~pe~~mr~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~ 644 (762)
T KOG0474|consen 565 LKGVPFLEWEPEPYMRNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLK 644 (762)
T ss_pred ccCCccccCCCchHhhhhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHH
Confidence 44555545542 568999999999999999999999999999999999985 258999999999999887
Q ss_pred hhhhhhc--c---c---CcccHHHHHhcCCC------------CCCCcc-cCCCcceEEeCCCCHHHHHHHHhcCCCCEE
Q 015103 329 DKAYAQI--H---L---DEMNIHQALQLGQD------------ANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRL 387 (413)
Q Consensus 329 ~~~~~~~--~---l---~~~~v~~~l~~~~~------------~~~~~~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l 387 (413)
++.+... . + ...+.+++...... ...... +|.+.++++.+++++..++..|.+-+.|++
T Consensus 645 ~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhL 724 (762)
T KOG0474|consen 645 KRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHL 724 (762)
T ss_pred hhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeE
Confidence 6554311 0 0 11223333321110 000112 688899999999999999999999999999
Q ss_pred EEEeCCCCeEEEEEehHHHHHH
Q 015103 388 VIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 388 ~VVd~~~~~liGvIS~~DIl~~ 409 (413)
.||. ..++++|++|++|+.++
T Consensus 725 lVv~-~~~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 725 LVVP-KTNRVVGILTRKDLARY 745 (762)
T ss_pred EEec-CCCceeEEEehhhhhhH
Confidence 9999 57888999999999854
No 190
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.50 E-value=2.1e-06 Score=81.47 Aligned_cols=149 Identities=21% Similarity=0.275 Sum_probs=118.0
Q ss_pred ccchHHHHHHHHHHHHHhh----------------hCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCC
Q 015103 65 QYSEADLQLSRDRISSFLS----------------THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK 128 (413)
Q Consensus 65 ~~~~~~~~~~~~~~~~fl~----------------~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~ 128 (413)
++|.+|+...-+..+.+-. .-|+.|+|-..+.+..+|.+++.++..+.+...-...+|||..+.
T Consensus 164 ~~s~EElR~~v~~~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~ 243 (423)
T COG4536 164 LSSKEELRTAVNESGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDL 243 (423)
T ss_pred ccCHHHHHHHHHHhhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCCh
Confidence 4667777554444444433 357899999899999999999999999999999999999999888
Q ss_pred CeEEEEeehHHHHHHHHHhccCCCCCCHHHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHH
Q 015103 129 GRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKIL 208 (413)
Q Consensus 129 ~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~ 208 (413)
.+++||+-..|+++.+.+.. +++.+++. +. ..++.+++..+++.+-+..|.
T Consensus 244 DnIiGvlh~r~llr~l~e~~----~~~k~d~~-----------~~--------------a~epyFVPe~Tpl~~QL~~F~ 294 (423)
T COG4536 244 DNIIGVLHVRDLLRLLNEKN----EFTKEDIL-----------RA--------------ADEPYFVPEGTPLSDQLVAFQ 294 (423)
T ss_pred hHhhhhhhHHHHHHHhhccC----cccHhHHH-----------HH--------------hcCCeecCCCCcHHHHHHHHH
Confidence 88999999999998776431 13223221 11 246889999999999999999
Q ss_pred hCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhcc
Q 015103 209 QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 248 (413)
Q Consensus 209 ~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~ 248 (413)
+++-|-..|+|+ -| .+.|++|.+||+.-+...+.
T Consensus 295 ~~k~hialVVDE---YG---~i~GLVTLEDIlEEIVGdft 328 (423)
T COG4536 295 RNKKHIALVVDE---YG---DIQGLVTLEDILEEIVGDFT 328 (423)
T ss_pred HhcceEEEEEec---cC---cEEeeeeHHHHHHHHhcccc
Confidence 999999999976 55 89999999999997765443
No 191
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.45 E-value=3.5e-06 Score=82.70 Aligned_cols=110 Identities=11% Similarity=0.210 Sum_probs=88.9
Q ss_pred CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 268 (413)
Q Consensus 189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 268 (413)
.......++.+..+++..|...+...+.|++. ++ ++.|.++.+++..++... .
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~------------~--------- 302 (363)
T TIGR01186 250 TGPITKTADKGPRSALQLMRDERVDSLYVVDR---QN---KLVGVVDVESIKQARKKA------------Q--------- 302 (363)
T ss_pred ccceeecCCCCHHHHHHHHHhcCCceEEEEcC---CC---CEEEEEeHHHHHHHhhcC------------C---------
Confidence 33445677889999999999999999999975 44 799999999988754321 0
Q ss_pred ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103 269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 329 (413)
Q Consensus 269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~ 329 (413)
.+.+.+.....++.+++++.+++..|.+++.. +||+|++|+++|+|++.+++..+..
T Consensus 303 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 303 ---GLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred ---chhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 11222445677899999999999999999998 9999999999999999999987654
No 192
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.45 E-value=4.3e-07 Score=86.71 Aligned_cols=107 Identities=19% Similarity=0.282 Sum_probs=91.3
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCc
Q 015103 280 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 356 (413)
Q Consensus 280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~ 356 (413)
+++.+.|+.++.++++....+++..+||+.+ .++++|+||.+|+-.+ ++. ...+.+
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~~~--------~~~~~~------------ 175 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-EDN--------SLLVSD------------ 175 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-hcc--------cchhhh------------
Confidence 5678899999999999999999999999964 4699999999998776 211 123344
Q ss_pred ccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 357 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 357 ~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
+|+.+.++...+.+|.++-+.+.+++-..||||| ++|.++.+|+++||.+.
T Consensus 176 -vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~-~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 176 -VMTKNPVTGAQGITLKEANEILKKIKKGKLPVVD-DKGELVAMLSRTDLMKN 226 (503)
T ss_pred -hcccccccccccccHHHHHHHHHhhhcCCcceec-cCCceeeeeehhhhhhh
Confidence 6766778889999999999999999999999999 69999999999999875
No 193
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.25 E-value=1.4e-05 Score=79.46 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=84.3
Q ss_pred eCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccccccc
Q 015103 194 AGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRI 273 (413)
Q Consensus 194 v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v 273 (413)
..++.+..+|+..|...+.+.+.|+|+ ++ ++.|+++..++.+..... .. +
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~------------~~------------~ 339 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIER---GN---KFVGAVSIDSLKTALTQQ------------QG------------L 339 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcC---CC---cEEEEEeHHHHHhhhhcC------------Cc------------h
Confidence 446778999999999999999999976 55 899999999997643210 11 1
Q ss_pred cccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 274 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 274 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
.+.+.....++.+++++.+++..+.+.... +||+|++|+++|+|++.+++..+.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 340 DAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALD 393 (400)
T ss_pred hhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 122444677899999999999999987766 999999999999999999999665
No 194
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=98.24 E-value=5.6e-07 Score=85.10 Aligned_cols=34 Identities=44% Similarity=0.891 Sum_probs=32.4
Q ss_pred ceEEEcCeeeeCCCCCcccCCCCCcceEEEeccCC
Q 015103 2 YKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQP 36 (413)
Q Consensus 2 ykf~vdg~w~~~~~~~~~~~~~g~~~~~~~~~~~~ 36 (413)
|||+|||+|+||+++|++.|..|+.||++.| ...
T Consensus 131 ~kf~vdge~~~s~~~pta~d~~Gn~~N~i~v-~~~ 164 (289)
T KOG1616|consen 131 YKFIVDGEWRHDPDLPTAEDSLGNLNNILEV-QDP 164 (289)
T ss_pred EEEecCCceecCCCCcccccccCCcccceEe-cCc
Confidence 9999999999999999999999999999999 644
No 195
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.13 E-value=2.5e-05 Score=69.77 Aligned_cols=126 Identities=18% Similarity=0.288 Sum_probs=104.4
Q ss_pred hCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhhcc
Q 015103 84 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 163 (413)
Q Consensus 84 ~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~~ 163 (413)
...+.|+|-..+++++++.+.++.+.+..+.+...+.-||...++..+.|+|-+.|++.+++ ++...+.
T Consensus 66 dl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~---~~~~~F~-------- 134 (293)
T COG4535 66 DLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMR---SDAEPFD-------- 134 (293)
T ss_pred HhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhc---CCccccc--------
Confidence 45677777777899999999999999999999999999999998888999999999997654 2211121
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHH
Q 015103 164 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 243 (413)
Q Consensus 164 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l 243 (413)
++. +-+|.+.+++.-.+...++-++.++.|...|+|+ =| .+-|++|..||+.-+
T Consensus 135 i~~--------------------lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDE---fG---gVsGLVTIEDiLEqI 188 (293)
T COG4535 135 IKE--------------------LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE---FG---GVSGLVTIEDILEQI 188 (293)
T ss_pred HHH--------------------hcccceecccchhHHHHHHHHHhhcCceEEEEec---cC---CeeeeEEHHHHHHHH
Confidence 111 2468899999999999999999999999999976 44 699999999999988
Q ss_pred Hhh
Q 015103 244 CRH 246 (413)
Q Consensus 244 ~~~ 246 (413)
..-
T Consensus 189 VGd 191 (293)
T COG4535 189 VGD 191 (293)
T ss_pred hcc
Confidence 653
No 196
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.09 E-value=9.2e-06 Score=81.69 Aligned_cols=143 Identities=15% Similarity=0.236 Sum_probs=105.6
Q ss_pred CCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhh-cc-CCCCC--ccc--
Q 015103 183 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH-FK-HSSSS--LPI-- 256 (413)
Q Consensus 183 ~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~-~~-~~~~~--~~~-- 256 (413)
++++|.++++++..-+.+....+.+.....+.+||+|+.+.+. ...+.|++-++.++..+.+. +. +.++. .+.
T Consensus 584 a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~-~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~ 662 (762)
T KOG0474|consen 584 AGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNE-AGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRR 662 (762)
T ss_pred HhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCcc-chhhhHHHHHHHHHHHHHhhhhhccCccccCcchhh
Confidence 4678999999999999999999999999999999998633211 23799999999998877542 22 11000 000
Q ss_pred ---------cccccccccccccc----ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHH
Q 015103 257 ---------LQQPVSSIQLGTWV----PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 323 (413)
Q Consensus 257 ---------~~~~i~~l~i~~~~----~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl 323 (413)
...+++++.+.... .....+|++.+.++.+++++..++.++++-+.+.+.||++.++++|++|++|+
T Consensus 663 ~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~ 742 (762)
T KOG0474|consen 663 KFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDL 742 (762)
T ss_pred cCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhh
Confidence 11122232221111 12345678889999999999999999999999999999998899999999999
Q ss_pred HHH
Q 015103 324 TAL 326 (413)
Q Consensus 324 ~~~ 326 (413)
...
T Consensus 743 ~~~ 745 (762)
T KOG0474|consen 743 ARY 745 (762)
T ss_pred hhH
Confidence 863
No 197
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.99 E-value=1.5e-05 Score=64.82 Aligned_cols=54 Identities=26% Similarity=0.468 Sum_probs=49.3
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
+++++|.+++.++.+++++.++++.|.+++...+||+|++|+++|+++..|+..
T Consensus 59 ~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 59 RVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 466778888999999999999999999999999999998899999999999863
No 198
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.89 E-value=3.7e-05 Score=51.02 Aligned_cols=47 Identities=28% Similarity=0.483 Sum_probs=42.7
Q ss_pred ceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103 363 CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 410 (413)
Q Consensus 363 ~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l 410 (413)
+.++.+++++.++++.|...+.+.+||++ ++++++|+++..++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVD-EEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEEC-CCCeEEEEEEHHHHHHhh
Confidence 46789999999999999999999999999 468999999999998865
No 199
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.82 E-value=4.6e-05 Score=61.90 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=45.7
Q ss_pred cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 358 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 358 ~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
+|.+++.++.+++++.++++.|...+.+.+||+| ++|+++|+||..||.+
T Consensus 63 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd-~~~~l~Givt~~dl~~ 112 (113)
T cd04597 63 VINRKPVTARPNDPLREALNLMHEHNIRTLPVVD-DDGTPAGIITLLDLAE 112 (113)
T ss_pred hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHhhc
Confidence 6666788999999999999999999999999999 5799999999999864
No 200
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.82 E-value=1.4e-05 Score=61.12 Aligned_cols=30 Identities=47% Similarity=0.829 Sum_probs=27.3
Q ss_pred CceEEEcCeee-eCCCCCc-ccCCCCCcceEE
Q 015103 1 MYKFYVDGEWR-HDENQPH-VSGNYGVVNCVY 30 (413)
Q Consensus 1 ~ykf~vdg~w~-~~~~~~~-~~~~~g~~~~~~ 30 (413)
.|||+|||+|. +||..|. ..|.+|+.||+|
T Consensus 50 ~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n~v~ 81 (82)
T cd02861 50 EYKFVVDGEWVIVDPNAAAYVDDGFGGKNAVF 81 (82)
T ss_pred EEEEEECCEEeeCCCCCCceecCCCCccceEc
Confidence 39999999999 9999985 899999999987
No 201
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.70 E-value=0.00014 Score=48.21 Aligned_cols=47 Identities=30% Similarity=0.537 Sum_probs=42.1
Q ss_pred ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103 281 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 327 (413)
Q Consensus 281 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~ 327 (413)
+.++.+++++.++++.|.+++.+.+||++++++++|+++..++...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 45788999999999999999999999999889999999999987643
No 202
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.0007 Score=68.64 Aligned_cols=127 Identities=17% Similarity=0.234 Sum_probs=88.0
Q ss_pred ceEecCC-CCHHHHHHHHHhCCCCEEEEEc--CCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCC----CCC
Q 015103 281 FAMLRPT-ASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ----DAN 353 (413)
Q Consensus 281 ~~~v~~~-~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~----~~~ 353 (413)
..++..+ .++.+...+|.+...+.+||+- +..+++|.+.++++...+.............+. ...+... ...
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~-~f~~~~~~~~~~~~ 636 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI-YFNDPSPSAVAGIP 636 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc-ccCCCCccccCCCC
Confidence 5555555 8999999999999999999883 356899999999987744311100000000011 0000000 001
Q ss_pred CCcc---cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103 354 PSLG---FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 410 (413)
Q Consensus 354 ~~~~---~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l 410 (413)
.+.+ +|...+.++...++...+++++.+-+.+.+.|.. +|++.|+||..|++++.
T Consensus 637 ~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 637 SRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRHT 694 (696)
T ss_pred CCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHhh
Confidence 1222 6778899999999999999999999999887765 79999999999999864
No 203
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.28 E-value=0.0024 Score=60.28 Aligned_cols=164 Identities=19% Similarity=0.210 Sum_probs=112.8
Q ss_pred CCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHH-----HHHhhccCCCCCcccccccc
Q 015103 187 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-----CICRHFKHSSSSLPILQQPV 261 (413)
Q Consensus 187 ~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~-----~l~~~~~~~~~~~~~~~~~i 261 (413)
+.+.+++++-| |.||+++ -+++.++. +| +++-+=|..+|+. |+..+.+. +
T Consensus 214 l~KTIvFitHD--LdEAlri-----G~rIaimk----dG---~ivQ~Gtp~eIl~~PAndYV~~Fv~~-----------v 268 (386)
T COG4175 214 LKKTIVFITHD--LDEALRI-----GDRIAIMK----DG---EIVQVGTPEEILLNPANDYVRDFVRN-----------V 268 (386)
T ss_pred hCCeEEEEecC--HHHHHhc-----cceEEEec----CC---eEEEeCCHHHHHcCccHHHHHHHHhc-----------C
Confidence 35667777766 8888875 26677874 46 8999999999985 22221111 1
Q ss_pred cccccccccccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCc
Q 015103 262 SSIQLGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDE 339 (413)
Q Consensus 262 ~~l~i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~ 339 (413)
... ..-++.++|.+ ....-.+...-..+++.+.....+.+.+++..++.+|+++..++.....
T Consensus 269 ~~~----~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~----------- 333 (386)
T COG4175 269 DRS----RVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKAAL----------- 333 (386)
T ss_pred Chh----heeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcccc-----------
Confidence 000 01234556663 2222222333456788888888777778887788999999888766300
Q ss_pred ccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 340 MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 340 ~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
..++.++..++++.+.+....+.... ++||| ++++++|+|++..++.+|.+
T Consensus 334 --------------------~~~~~~v~~d~~~~~~~~~~~~~~~p-~aVvd-e~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 334 --------------------IDDVLTVDADTPLSEILARIRQAPCP-VAVVD-EDGRYVGIISRGELLEALAR 384 (386)
T ss_pred --------------------cccccccCccchHHHHHHHHhcCCCc-eeEEc-CCCcEEEEecHHHHHHHHhc
Confidence 12466788999999999998888774 78999 69999999999999999875
No 204
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.0077 Score=61.32 Aligned_cols=133 Identities=12% Similarity=0.100 Sum_probs=93.4
Q ss_pred CcEEeCCC-CCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccC-CCC--Ccccccccccccc
Q 015103 190 PLVQAGPY-DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKH-SSS--SLPILQQPVSSIQ 265 (413)
Q Consensus 190 ~~v~v~~~-~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~-~~~--~~~~~~~~i~~l~ 265 (413)
++..+..+ +++.|...+|.+...+.+||+-+. ++. .++|++..+++...+...... ... .......+.....
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~-~sq---~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~ 632 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSE-DSQ---RLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAV 632 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEcc-ccc---eeEEEEchHHHHHHHhhhccccccceecccccCCCCcccc
Confidence 46666665 899999999999999999998542 233 899999999998777532111 000 0001122222111
Q ss_pred c-ccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103 266 L-GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 327 (413)
Q Consensus 266 i-~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~ 327 (413)
- .......+++|.-.+.++...++...+++++.+-+.+.+.|. ++|++.|+||.+|+++..
T Consensus 633 ~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 633 AGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHT 694 (696)
T ss_pred CCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhh
Confidence 1 111124456777888999999999999999999999998876 589999999999998854
No 205
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.75 E-value=0.0058 Score=60.53 Aligned_cols=107 Identities=14% Similarity=0.161 Sum_probs=72.0
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 351 (413)
Q Consensus 272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~ 351 (413)
+++.+|.+.......+.+ .+++. ++.+.+.|+|+ |+++..+...+.+... +.++.+ +
T Consensus 275 ~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~~-~----- 331 (382)
T TIGR03415 275 TARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQAWAA-------EQEVES-L----- 331 (382)
T ss_pred eHHHHhcccccccccCcc--hhhhh---cccceeEeecc-----ceecccchHhHhhccc-------ccchhh-h-----
Confidence 445667433322233222 34433 78899999985 7888777655433101 112222 1
Q ss_pred CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
.....++++++++.+++..+.+++.. ++|+| + |+++|+|++.+++.+|.+
T Consensus 332 --------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 332 --------EAAPTVINPDTLMRDVLAARHRTGGA-ILLVE-N-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred --------cccCcccCCCCcHHHHHHHHhcCCCC-eEEee-C-CeEEEEEeHHHHHHHHhc
Confidence 12467889999999999999988865 88888 4 999999999999999864
No 206
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.42 E-value=0.022 Score=59.30 Aligned_cols=60 Identities=10% Similarity=0.085 Sum_probs=50.7
Q ss_pred CCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhc
Q 015103 184 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHF 247 (413)
Q Consensus 184 ~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~ 247 (413)
.++|.+++..+..++|..|.-+.+....++.+|++++ .++. .++|.+.++.+...+.++.
T Consensus 591 E~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s-~esm---iLlGSV~R~~L~~ll~~~i 650 (931)
T KOG0476|consen 591 EHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVES-KESM---ILLGSVARRYLTALLQRHI 650 (931)
T ss_pred eeeccccceeeeccCcHHHHHHHHHhCccceeccccC-cccc---eeeehhHHHHHHHHHHhhc
Confidence 3589999999999999999998887777999999975 3333 7999999999999887643
No 207
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.17 E-value=0.44 Score=44.09 Aligned_cols=117 Identities=18% Similarity=0.200 Sum_probs=69.1
Q ss_pred CCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCC-CCCccccccccccccc
Q 015103 188 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS-SSSLPILQQPVSSIQL 266 (413)
Q Consensus 188 ~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~-~~~~~~~~~~i~~l~i 266 (413)
.+.++.|+-| +.||+++ ..++.|+++ | +++-+-+..+|++.-...|-.. .+........+...
T Consensus 186 ~kTivfVTHD--idEA~kL-----adri~vm~~----G---~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~-- 249 (309)
T COG1125 186 GKTIVFVTHD--IDEALKL-----ADRIAVMDA----G---EIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLV-- 249 (309)
T ss_pred CCEEEEEecC--HHHHHhh-----hceEEEecC----C---eEEEeCCHHHHHhCccHHHHHHHhccccccccccchh--
Confidence 3456677666 7788876 366888853 6 8999999998886322211110 00000000111111
Q ss_pred ccccccccccCCCCc----eEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 267 GTWVPRIGEANGRPF----AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 267 ~~~~~~v~~~m~~~~----~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
.+.+.+.+.. -.+.......+++..+...+.+.+||+|++|+++|.+|..+++.
T Consensus 250 -----~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 250 -----SVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred -----hHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence 1112121111 11233344566888888899999999999999999999999875
No 208
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.09 E-value=0.53 Score=43.57 Aligned_cols=113 Identities=15% Similarity=0.211 Sum_probs=69.9
Q ss_pred CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhh--------h-cccCcccHHHHHhcC
Q 015103 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA--------Q-IHLDEMNIHQALQLG 349 (413)
Q Consensus 279 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~--------~-~~l~~~~v~~~l~~~ 349 (413)
+.++.++.+ +.||+++- +.+.|.+ +|+++-+-+..+++..-++..-. . ..+...++.++...+
T Consensus 187 kTivfVTHD--idEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~ 258 (309)
T COG1125 187 KTIVFVTHD--IDEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG 258 (309)
T ss_pred CEEEEEecC--HHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence 346666665 68888875 4688887 79999999988887633211100 0 011122233322211
Q ss_pred CCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 350 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 350 ~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
.. . .--.........+++..+...+...++||| ++|+++|.||+.+++..
T Consensus 259 ~~----~-----~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd-~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 259 EP----A-----DGEPLLEGFVDRDALSDFLARGRSVLPVVD-EDGRPLGTVTRADLLDE 308 (309)
T ss_pred cc----c-----cCCccccchhhHHHHHHHHhcCCceeEEEC-CCCcEeeEEEHHHHhhh
Confidence 10 0 000122234445577888888999999999 69999999999999875
No 209
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.03 E-value=0.097 Score=49.70 Aligned_cols=90 Identities=14% Similarity=0.173 Sum_probs=66.5
Q ss_pred CHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccccccccccCC
Q 015103 199 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG 278 (413)
Q Consensus 199 sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~ 278 (413)
.-..++..+.+...+.+.+++. .+ +.+|+++..+...+ .+.
T Consensus 294 ~~~~al~~~~~~~~~~~~~~~~---~~---~~~g~v~~~~~~~~---------------------------------~~~ 334 (386)
T COG4175 294 GPRVALKLLRDEGREYGYAVDR---GN---KFVGVVSIDSLVKA---------------------------------ALI 334 (386)
T ss_pred ccchhhhhhhhccchhhHHHhc---cC---ceeeEEeccchhcc---------------------------------ccc
Confidence 3345667777766666666642 33 68888888776552 133
Q ss_pred CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 279 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
.++.++..++++.+.+..+.+.. ..+||+|++++++|++++..++.++.
T Consensus 335 ~~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 335 DDVLTVDADTPLSEILARIRQAP-CPVAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred ccccccCccchHHHHHHHHhcCC-CceeEEcCCCcEEEEecHHHHHHHHh
Confidence 45678889999999998887665 46899999999999999999998664
No 210
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=90.77 E-value=0.55 Score=46.61 Aligned_cols=48 Identities=13% Similarity=0.211 Sum_probs=40.7
Q ss_pred CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 279 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
....++++++++.+++..+.+.+. -++|+|+ |+++|+|++.+++..+.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 333 AAPTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred ccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHh
Confidence 356788999999999999888765 4888885 99999999999988653
No 211
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=87.41 E-value=0.8 Score=48.16 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=53.6
Q ss_pred cccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHhh
Q 015103 268 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKD 329 (413)
Q Consensus 268 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGiit~~dl~~~~~~ 329 (413)
.+...+.++|.+++.++..+.+..|..+.+....++.+|+||+ +--++|.+.++.+..++..
T Consensus 585 ~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 585 VHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred eeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 3445789999999999999999999999988777999999985 4579999999999887653
No 212
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=85.20 E-value=0.46 Score=35.36 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=22.4
Q ss_pred CceEEEcCeeeeCCCCCcccCCCCCcce
Q 015103 1 MYKFYVDGEWRHDENQPHVSGNYGVVNC 28 (413)
Q Consensus 1 ~ykf~vdg~w~~~~~~~~~~~~~g~~~~ 28 (413)
.|||.|||+|.+++..|...+.....++
T Consensus 54 ~Y~~~v~~~~~~~~~~~~~~~~~~~~~~ 81 (83)
T cd02688 54 QYKYVLDGGKGPDEGEPKADEGGSGDSV 81 (83)
T ss_pred EEEEEEeCCCCCCCCChhhhcCCcccce
Confidence 4999999999999999777666555554
No 213
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=85.16 E-value=0.78 Score=34.97 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=22.2
Q ss_pred ceEEEcCeeeeCCCCCcccCCCCCcceE
Q 015103 2 YKFYVDGEWRHDENQPHVSGNYGVVNCV 29 (413)
Q Consensus 2 ykf~vdg~w~~~~~~~~~~~~~g~~~~~ 29 (413)
|+|.|||.|..||..|...-..|..-+.
T Consensus 56 Y~~~vdg~~~~DP~s~~~~~~~~~~~~~ 83 (85)
T cd02858 56 YSFLVDGVRVIDPSNPTTKPGRQVDTSG 83 (85)
T ss_pred EEEEECCeEecCCCCCceeeccccccee
Confidence 8999999999999999877555554443
No 214
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=65.70 E-value=7.4 Score=40.09 Aligned_cols=116 Identities=14% Similarity=0.191 Sum_probs=72.5
Q ss_pred ccccCCC--CceEecCCCCHH-HHHHHHHhCCCCEEEEEcCCC--cEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHh
Q 015103 273 IGEANGR--PFAMLRPTASLG-SALALLVQADVSSIPIVDDND--SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQ 347 (413)
Q Consensus 273 v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~g--~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~ 347 (413)
++++|.+ .+..+..+..+. +......+++++++||.+.+. ++.|.+....+.-..... .+...++.+
T Consensus 206 ~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~-----~~~~~~v~~--- 277 (498)
T KOG2118|consen 206 VGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEV-----PLEPLPVSE--- 277 (498)
T ss_pred HHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhcccc-----ccccccchh---
Confidence 4455543 355556666665 555566789999999997533 333323222222111111 111233333
Q ss_pred cCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 348 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 348 ~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
.+..+...++.++++.+.++.+...+.|.+.|.. ...-+|++++.|+ ..
T Consensus 278 ----------~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~--~~~~~~~~~l~~~-~~ 326 (498)
T KOG2118|consen 278 ----------SALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN--GHVDIFVLTLEDL-EE 326 (498)
T ss_pred ----------hhccccccCCCcccHHHHHHHHhhhhceeEEEec--CCcceeeEeccch-hh
Confidence 3445678889999999999999999888776665 4668999999987 44
No 215
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=64.42 E-value=21 Score=38.03 Aligned_cols=97 Identities=12% Similarity=0.139 Sum_probs=57.6
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh-hhhhhcccCc-----ccHHHHHhcCCCCCCCcccCCCcc
Q 015103 290 LGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD-KAYAQIHLDE-----MNIHQALQLGQDANPSLGFNGQRC 363 (413)
Q Consensus 290 l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~-~~~~~~~l~~-----~~v~~~l~~~~~~~~~~~~m~~~~ 363 (413)
+....+.+...+ ..+.++|.+|.++++....++...... +......|.+ ..++-++.. ..+
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al~~------------~~p 127 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAIS------------GQP 127 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHHhc------------CCc
Confidence 344555555555 688899999999999998888765432 2211122222 122333322 234
Q ss_pred eEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEeh
Q 015103 364 QMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL 403 (413)
Q Consensus 364 ~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~ 403 (413)
+.+...+-..+.+. .-.....||.|+ +|+++|+|+.
T Consensus 128 v~v~g~EH~~~~~~---~~~c~aaPI~d~-~G~liGvl~l 163 (638)
T PRK11388 128 VKTMGDQHFKQALH---NWAFCATPVFDS-KGRLTGTIAL 163 (638)
T ss_pred eEEecHHHHHHhcc---CceEEeeEEEcC-CCCEEEEEEE
Confidence 45555554444433 334456899994 8999999974
No 216
>PF01378 IgG_binding_B: B domain; InterPro: IPR000724 This domain is found as a tandem repeat in Streptococcal cell surface proteins, such as the IgG binding proteins G and MIG. These proteins are type I membrane proteins that bind to the constant Fc region of IgG with high affinity. The N terminus of MIG mediates binding to plasma proteinase inhibitor alpha 2-macroglobulin after complex formation with proteases.; GO: 0005618 cell wall; PDB: 1IGC_A 2IGH_A 2NMQ_A 1IGD_A 1PGX_A 2IGD_A 1QKZ_A 1GB4_A 1FCC_D 1FCL_A ....
Probab=60.74 E-value=3.1 Score=28.04 Aligned_cols=11 Identities=55% Similarity=1.126 Sum_probs=9.3
Q ss_pred EcCeeeeCCCC
Q 015103 6 VDGEWRHDENQ 16 (413)
Q Consensus 6 vdg~w~~~~~~ 16 (413)
|||+|-+|+.-
T Consensus 38 v~gew~yd~at 48 (55)
T PF01378_consen 38 VDGEWSYDDAT 48 (55)
T ss_dssp TTSEEEEETTT
T ss_pred CCCccccccch
Confidence 79999999864
No 217
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=46.54 E-value=93 Score=33.19 Aligned_cols=99 Identities=11% Similarity=0.054 Sum_probs=54.5
Q ss_pred HHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhh-ccCCCCCcccccccccccccccccccccccCCCC
Q 015103 202 EVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH-FKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRP 280 (413)
Q Consensus 202 ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~-~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~ 280 (413)
+....+...+ ..+.+.|. +| .++++....++++.+... +.. . ..+.+..++.-.+|+-. ....
T Consensus 63 ~l~~~l~~~~-~~~~l~D~---~G---~vL~~~g~~~~~~~~~~~~~~~-G--~~w~E~~~GTnaig~al------~~~~ 126 (638)
T PRK11388 63 DAWEYMADRE-CALLILDE---TG---CILSRNGDPQTLQQLSALGFND-G--TYCAEGIIGTNALSLAA------ISGQ 126 (638)
T ss_pred HHHHHhcCCC-cEEEEEcC---Cc---eEEEEeCCHHHHHHHHHcCCcc-C--CccchhccCcCHHHHHH------hcCC
Confidence 3334444444 67777765 66 899999999888766441 111 0 01111111111111111 1233
Q ss_pred ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEe
Q 015103 281 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS 319 (413)
Q Consensus 281 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit 319 (413)
++.+...+ +-.+.+......+.||.|.+|+++|+++
T Consensus 127 pv~v~g~E---H~~~~~~~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 127 PVKTMGDQ---HFKQALHNWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred ceEEecHH---HHHHhccCceEEeeEEEcCCCCEEEEEE
Confidence 44555543 3334444456778999999999999996
No 218
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=44.37 E-value=51 Score=24.53 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCcEEEEEeHHHHHHHHhhh
Q 015103 302 VSSIPIVDDNDSLLDIYSRSDITALAKDK 330 (413)
Q Consensus 302 ~~~lpVvd~~g~lvGiit~~dl~~~~~~~ 330 (413)
...+-|+|++|..+|+++.++.+.+....
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~~ 40 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKEK 40 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHHT
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHHc
Confidence 45677899999999999999999877643
No 219
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=38.67 E-value=62 Score=24.05 Aligned_cols=25 Identities=16% Similarity=0.433 Sum_probs=18.5
Q ss_pred CCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 384 VRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 384 ~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
...+-||| ++|..+|++++++-++.
T Consensus 12 ~~~VrlI~-~~g~~lGv~~~~eAl~~ 36 (76)
T PF05198_consen 12 APEVRLID-EDGEQLGVMSLREALRL 36 (76)
T ss_dssp -SEEEEE--TTS-EEEEEEHHHHHHH
T ss_pred CCEEEEEC-CCCcEeceEEHHHHHHH
Confidence 35677889 58999999999998764
No 220
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=34.10 E-value=95 Score=32.08 Aligned_cols=130 Identities=15% Similarity=0.168 Sum_probs=85.4
Q ss_pred HHHHhhhCcccccCCCCccEEEEcCCCCHH-HHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCH
Q 015103 78 ISSFLSTHTVYELLPDSGKVTALDVNLAVK-QAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE 156 (413)
Q Consensus 78 ~~~fl~~~~~~dl~p~s~kvv~l~~~~~v~-~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~ 156 (413)
...-|...++.|+|-+-..+..++.+..+. +......+.|.+..||++.+-...+|.+=...++.++... .++
T Consensus 197 g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~----~~~-- 270 (498)
T KOG2118|consen 197 GALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVE----VPL-- 270 (498)
T ss_pred hhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccc----ccc--
Confidence 334455577888888889999999999998 5555666999999999998765444442111222221100 011
Q ss_pred HHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeeh
Q 015103 157 EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASL 236 (413)
Q Consensus 157 ~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~ 236 (413)
....|. ..+...+..++.++++.+.++.+.+.+.|.+.|... . .-+++++.
T Consensus 271 ------~~~~v~----------------~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~---~----~~~~~~~l 321 (498)
T KOG2118|consen 271 ------EPLPVS----------------ESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRNG---H----VDIFVLTL 321 (498)
T ss_pred ------ccccch----------------hhhccccccCCCcccHHHHHHHHhhhhceeEEEecC---C----cceeeEec
Confidence 111111 134556778889999999999999888888877742 2 46888998
Q ss_pred hhHHHHH
Q 015103 237 SDILKCI 243 (413)
Q Consensus 237 ~dIl~~l 243 (413)
.++ .-.
T Consensus 322 ~~~-~~~ 327 (498)
T KOG2118|consen 322 EDL-EEV 327 (498)
T ss_pred cch-hhh
Confidence 887 433
No 221
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=28.80 E-value=78 Score=32.61 Aligned_cols=37 Identities=30% Similarity=0.566 Sum_probs=32.3
Q ss_pred CCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 370 DPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 370 ~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
..+..+.+...+.|-.-|+|+. ++++.|+|.+.|+++
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~--~~~~~GVI~LkDivK 449 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVE--NGRILGVIYLKDIVK 449 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEE--CCEEEEEEEehhhcc
Confidence 4577888888999999999998 699999999999975
No 222
>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.
Probab=28.07 E-value=28 Score=21.85 Aligned_cols=11 Identities=45% Similarity=1.047 Sum_probs=8.9
Q ss_pred eEEEcCeeeeC
Q 015103 3 KFYVDGEWRHD 13 (413)
Q Consensus 3 kf~vdg~w~~~ 13 (413)
.|++||.|.+=
T Consensus 11 ~~~~~G~W~CC 21 (36)
T smart00107 11 SFWVDGKWLCC 21 (36)
T ss_pred CceeCCeEccC
Confidence 57999999874
No 223
>COG1559 Aminodeoxychorismate lyase [Coenzyme transport and metabolism]
Probab=26.30 E-value=6.2e+02 Score=24.75 Aligned_cols=144 Identities=16% Similarity=0.192 Sum_probs=84.8
Q ss_pred CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103 190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 269 (413)
Q Consensus 190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 269 (413)
..+.|.+.+++.+....+.+++ +|.-..+.+++.+.... ...+..|+|
T Consensus 46 ~~v~I~~Gs~~~~i~~~Le~~~---------------------vI~~~~~f~~~~~~~~~-----------~~~lkaG~Y 93 (342)
T COG1559 46 KTVTIPPGSSVSEIGSELEKQK---------------------VIKNARVFRLYLKYNPA-----------AGSLKAGEY 93 (342)
T ss_pred eEEEECCCCCHHHHHHHHHhcC---------------------ccccHHHHHHHHHhcCc-----------cCCcCCcee
Confidence 6889999999999999987754 34445677766654322 122344444
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcC
Q 015103 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG 349 (413)
Q Consensus 270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~ 349 (413)
.+.+.++..+++++|.+-+.....++=-+| .+.+++...+................++...-
T Consensus 94 -------------~l~~~ms~~~il~~L~~Gk~~~~~~~ipEG-----~t~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~ 155 (342)
T COG1559 94 -------------RLRPGMSAADILKLLESGKSAQFKVTIPEG-----YTLKQIAKKLAEAPVLDGVLDGLAIAEIAARL 155 (342)
T ss_pred -------------ecCCCCCHHHHHHHHhcCccccceEecCCC-----ccHHHHHHHHhcchhhhhhhhhhhhHHHHHhc
Confidence 478889999999999865544444331223 46777777555333222221122233322211
Q ss_pred C-CCCCCc-ccCCCcceEEeCCCCHHHHHHHHhcCC
Q 015103 350 Q-DANPSL-GFNGQRCQMCLRSDPLHKVMERLANPG 383 (413)
Q Consensus 350 ~-~~~~~~-~~m~~~~~~v~~~~sl~~~~~~m~~~~ 383 (413)
. ....+. |+.=+.-+.++++++-.++++.|.+.-
T Consensus 156 p~~~~~~~EG~l~PdTY~~~~g~~~~~Ii~~mi~~~ 191 (342)
T COG1559 156 PKLDKERLEGYLFPDTYEFTRGTSAEDIIKRMIKAM 191 (342)
T ss_pred CCCcCCCCceeecCceeeeCCCCCHHHHHHHHHHHH
Confidence 1 001111 233345677889999999999987653
No 224
>PF11447 DUF3201: Protein of unknown function (DUF3201); InterPro: IPR024505 This archaeal family of proteins has no known function.; PDB: 1YB3_A.
Probab=25.81 E-value=40 Score=27.88 Aligned_cols=9 Identities=67% Similarity=1.656 Sum_probs=6.8
Q ss_pred EEEcCeeee
Q 015103 4 FYVDGEWRH 12 (413)
Q Consensus 4 f~vdg~w~~ 12 (413)
-++||+||-
T Consensus 37 i~lDgeW~e 45 (150)
T PF11447_consen 37 IYLDGEWRE 45 (150)
T ss_dssp EEETTEEEE
T ss_pred EEecCeeee
Confidence 468888884
No 225
>PF08272 Topo_Zn_Ribbon: Topoisomerase I zinc-ribbon-like ; InterPro: IPR013263 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the C-terminal zinc-ribbon-like domain found in bacterial topoisomerase I (type IA) enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0006265 DNA topological change, 0005694 chromosome; PDB: 1YUA_A.
Probab=25.21 E-value=16 Score=23.85 Aligned_cols=10 Identities=60% Similarity=1.401 Sum_probs=6.3
Q ss_pred eEEEcCeeee
Q 015103 3 KFYVDGEWRH 12 (413)
Q Consensus 3 kf~vdg~w~~ 12 (413)
.|+.||+|+-
T Consensus 30 af~~~gkw~~ 39 (42)
T PF08272_consen 30 AFYKDGKWRV 39 (42)
T ss_dssp CCCSSS-B-S
T ss_pred EeccCCeEec
Confidence 4788999984
No 226
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=25.09 E-value=40 Score=27.10 Aligned_cols=14 Identities=29% Similarity=0.816 Sum_probs=10.6
Q ss_pred CceEEEcCeeeeCC
Q 015103 1 MYKFYVDGEWRHDE 14 (413)
Q Consensus 1 ~ykf~vdg~w~~~~ 14 (413)
+|+|.|||.|.-++
T Consensus 63 ~Y~y~v~g~~~p~~ 76 (119)
T cd02852 63 LYGYRVDGPFEPEQ 76 (119)
T ss_pred EEEEEECCCCCCCc
Confidence 59999999865443
No 227
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=23.02 E-value=84 Score=25.07 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=12.3
Q ss_pred EEEEEcCCCcEEEEEe
Q 015103 304 SIPIVDDNDSLLDIYS 319 (413)
Q Consensus 304 ~lpVvd~~g~lvGiit 319 (413)
..||.|.+|+++|+++
T Consensus 93 ~~PV~d~~g~viG~V~ 108 (116)
T PF14827_consen 93 FAPVYDSDGKVIGVVS 108 (116)
T ss_dssp EEEEE-TTS-EEEEEE
T ss_pred EEeeECCCCcEEEEEE
Confidence 5799988999999986
No 228
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=21.93 E-value=48 Score=25.92 Aligned_cols=10 Identities=40% Similarity=0.806 Sum_probs=8.2
Q ss_pred CceEEEcCee
Q 015103 1 MYKFYVDGEW 10 (413)
Q Consensus 1 ~ykf~vdg~w 10 (413)
+|+|.|||.|
T Consensus 59 ~Y~y~i~g~~ 68 (103)
T cd02856 59 RYGFRVHGPY 68 (103)
T ss_pred EEEEEECCcc
Confidence 4999999953
No 229
>PF14416 PMR5N: PMR5 N terminal Domain
Probab=21.49 E-value=72 Score=22.14 Aligned_cols=18 Identities=28% Similarity=0.589 Sum_probs=13.9
Q ss_pred EcCeeeeCCCCCcccCCC
Q 015103 6 VDGEWRHDENQPHVSGNY 23 (413)
Q Consensus 6 vdg~w~~~~~~~~~~~~~ 23 (413)
-+|.|.+|+..|.-++..
T Consensus 7 ~~G~WV~D~~~PlY~~~~ 24 (55)
T PF14416_consen 7 FDGRWVPDPSYPLYTNST 24 (55)
T ss_pred ccCEEEeCCCCCccCCCC
Confidence 479999999998655543
Done!