Query 015103
Match_columns 413
No_of_seqs 536 out of 3459
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 06:44:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015103.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015103hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t4n_C Nuclear protein SNF4; C 100.0 4.3E-41 1.5E-45 324.6 30.9 305 68-412 13-320 (323)
2 2qrd_G Protein C1556.08C; AMPK 100.0 2.6E-35 8.9E-40 285.4 32.6 303 69-412 6-315 (334)
3 2v8q_E 5'-AMP-activated protei 100.0 7.3E-35 2.5E-39 281.9 25.4 300 73-412 23-323 (330)
4 3kh5_A Protein MJ1225; AMPK, A 100.0 3.6E-32 1.2E-36 256.1 24.9 269 86-410 4-279 (280)
5 3ddj_A CBS domain-containing p 100.0 2E-32 6.8E-37 260.6 18.0 264 84-412 19-285 (296)
6 2yzq_A Putative uncharacterize 100.0 9.1E-30 3.1E-34 240.2 15.0 263 87-412 3-279 (282)
7 3kh5_A Protein MJ1225; AMPK, A 99.9 1.9E-23 6.6E-28 196.3 19.1 195 186-411 9-204 (280)
8 3ddj_A CBS domain-containing p 99.9 4.2E-23 1.4E-27 196.1 13.9 194 181-411 20-213 (296)
9 2v8q_E 5'-AMP-activated protei 99.9 9.9E-22 3.4E-26 189.6 15.6 206 185-411 39-250 (330)
10 3t4n_C Nuclear protein SNF4; C 99.9 3.2E-21 1.1E-25 185.4 17.5 199 188-411 39-247 (323)
11 2yzq_A Putative uncharacterize 99.9 1.1E-21 3.8E-26 184.7 9.6 173 186-407 6-179 (282)
12 2qrd_G Protein C1556.08C; AMPK 99.8 1.5E-20 5.2E-25 181.5 17.0 208 185-411 26-242 (334)
13 4esy_A CBS domain containing m 99.8 2.4E-20 8.1E-25 162.7 9.7 137 272-412 19-162 (170)
14 3k6e_A CBS domain protein; str 99.8 6.1E-19 2.1E-23 151.7 11.6 123 273-411 17-141 (156)
15 3lv9_A Putative transporter; C 99.8 1.6E-18 5.3E-23 147.4 13.9 119 272-412 24-145 (148)
16 3i8n_A Uncharacterized protein 99.8 1.9E-18 6.4E-23 143.6 13.2 120 272-412 7-129 (130)
17 3nqr_A Magnesium and cobalt ef 99.8 1.2E-18 4E-23 144.2 9.5 120 272-412 4-126 (127)
18 3hf7_A Uncharacterized CBS-dom 99.8 3.2E-18 1.1E-22 142.3 11.7 122 272-412 3-127 (130)
19 3kpb_A Uncharacterized protein 99.8 4.2E-18 1.4E-22 139.4 12.2 119 272-412 2-120 (122)
20 3lhh_A CBS domain protein; str 99.8 7.9E-18 2.7E-22 147.0 14.1 119 272-412 43-164 (172)
21 2rih_A Conserved protein with 99.7 7.4E-18 2.5E-22 141.9 12.2 123 269-411 3-127 (141)
22 3jtf_A Magnesium and cobalt ef 99.7 4E-18 1.4E-22 141.5 9.8 118 272-412 6-126 (129)
23 1pbj_A Hypothetical protein; s 99.7 1.8E-17 6.2E-22 136.1 13.6 121 272-412 2-122 (125)
24 3oco_A Hemolysin-like protein 99.7 7E-18 2.4E-22 144.3 11.0 119 272-412 21-143 (153)
25 3lfr_A Putative metal ION tran 99.7 2.5E-18 8.7E-23 144.1 7.9 121 272-412 4-127 (136)
26 2p9m_A Hypothetical protein MJ 99.7 2.8E-17 9.4E-22 137.6 14.2 122 272-412 9-136 (138)
27 2o16_A Acetoin utilization pro 99.7 3.2E-17 1.1E-21 141.3 14.1 125 272-411 6-134 (160)
28 4gqw_A CBS domain-containing p 99.7 1.5E-17 5.1E-22 141.3 11.7 127 272-412 6-143 (152)
29 3gby_A Uncharacterized protein 99.7 6.1E-18 2.1E-22 140.0 9.0 121 272-412 6-126 (128)
30 2yzi_A Hypothetical protein PH 99.7 3.4E-17 1.2E-21 137.1 13.6 121 272-412 8-129 (138)
31 2ef7_A Hypothetical protein ST 99.7 2.6E-17 8.8E-22 136.9 12.7 120 272-411 5-124 (133)
32 3ctu_A CBS domain protein; str 99.7 1.3E-17 4.3E-22 142.9 11.1 124 272-411 16-141 (156)
33 3fhm_A Uncharacterized protein 99.7 1.9E-17 6.3E-22 143.4 11.8 123 272-412 25-150 (165)
34 2uv4_A 5'-AMP-activated protei 99.7 2.5E-17 8.6E-22 140.5 12.2 123 279-412 29-151 (152)
35 2nyc_A Nuclear protein SNF4; b 99.7 4.1E-17 1.4E-21 137.4 13.1 126 276-412 16-141 (144)
36 1y5h_A Hypothetical protein RV 99.7 1.3E-17 4.3E-22 138.8 9.8 122 272-412 9-131 (133)
37 3fv6_A YQZB protein; CBS domai 99.7 4.2E-17 1.4E-21 140.3 12.8 122 272-412 18-144 (159)
38 3k2v_A Putative D-arabinose 5- 99.7 3.5E-17 1.2E-21 139.2 12.1 119 272-409 29-149 (149)
39 3lqn_A CBS domain protein; csg 99.7 2.4E-17 8.3E-22 140.1 10.9 125 272-412 16-143 (150)
40 2pfi_A Chloride channel protei 99.7 8.9E-17 3E-21 138.5 13.5 132 272-412 14-147 (164)
41 1pvm_A Conserved hypothetical 99.7 6.7E-17 2.3E-21 142.6 12.9 124 271-411 9-132 (184)
42 3sl7_A CBS domain-containing p 99.7 2.2E-17 7.5E-22 144.5 9.7 138 272-412 5-156 (180)
43 3ocm_A Putative membrane prote 99.7 1.1E-16 3.7E-21 139.9 12.9 118 272-412 37-157 (173)
44 2rc3_A CBS domain; in SITU pro 99.7 8.4E-17 2.9E-21 134.2 11.6 121 272-412 7-131 (135)
45 3l2b_A Probable manganase-depe 99.7 1.8E-16 6E-21 146.3 15.0 200 183-410 9-242 (245)
46 2emq_A Hypothetical conserved 99.7 1.1E-16 3.9E-21 136.9 12.3 125 272-412 12-139 (157)
47 1o50_A CBS domain-containing p 99.7 1.6E-16 5.4E-21 136.3 13.3 125 272-412 17-153 (157)
48 1yav_A Hypothetical protein BS 99.7 1E-16 3.5E-21 137.7 12.0 124 272-411 15-141 (159)
49 4esy_A CBS domain containing m 99.7 2.1E-17 7.1E-22 143.9 7.2 155 73-244 6-161 (170)
50 4fry_A Putative signal-transdu 99.7 1.1E-16 3.9E-21 137.1 11.7 125 269-412 5-135 (157)
51 3kxr_A Magnesium transporter, 99.7 2.1E-16 7E-21 142.0 13.2 116 272-411 55-173 (205)
52 3kxr_A Magnesium transporter, 99.7 3.8E-16 1.3E-20 140.3 13.7 121 178-329 51-174 (205)
53 1vr9_A CBS domain protein/ACT 99.7 3.4E-16 1.2E-20 141.5 12.5 156 184-391 16-171 (213)
54 3oi8_A Uncharacterized protein 99.7 9.2E-17 3.1E-21 137.8 8.4 114 272-407 39-155 (156)
55 1vr9_A CBS domain protein/ACT 99.7 1.8E-16 6.2E-21 143.3 10.7 121 267-411 9-129 (213)
56 3lv9_A Putative transporter; C 99.7 7.2E-16 2.5E-20 130.8 13.4 118 183-328 25-144 (148)
57 2j9l_A Chloride channel protei 99.7 5.3E-16 1.8E-20 136.4 12.1 138 272-411 12-164 (185)
58 3i8n_A Uncharacterized protein 99.7 6.5E-16 2.2E-20 128.1 11.9 120 182-328 7-128 (130)
59 3k6e_A CBS domain protein; str 99.6 6.4E-16 2.2E-20 132.7 11.4 117 189-328 25-141 (156)
60 3kpb_A Uncharacterized protein 99.6 5.4E-16 1.8E-20 126.8 10.4 114 186-328 6-119 (122)
61 3lhh_A CBS domain protein; str 99.6 1.8E-15 6.3E-20 131.8 14.2 121 181-329 42-164 (172)
62 2d4z_A Chloride channel protei 99.6 3E-15 1E-19 138.2 16.0 140 271-412 13-246 (250)
63 3nqr_A Magnesium and cobalt ef 99.6 4.8E-16 1.6E-20 128.4 6.7 115 186-327 8-124 (127)
64 2ef7_A Hypothetical protein ST 99.6 6.4E-15 2.2E-19 122.3 13.1 119 183-328 6-124 (133)
65 3jtf_A Magnesium and cobalt ef 99.6 2.1E-15 7.3E-20 124.9 10.1 114 186-328 10-125 (129)
66 3gby_A Uncharacterized protein 99.6 2.7E-15 9.2E-20 124.0 10.7 118 184-328 8-125 (128)
67 1pbj_A Hypothetical protein; s 99.6 2.7E-15 9.4E-20 123.0 10.6 116 186-328 6-121 (125)
68 2oux_A Magnesium transporter; 99.6 2E-15 6.8E-20 142.6 11.0 117 271-411 137-258 (286)
69 3oco_A Hemolysin-like protein 99.6 1.8E-15 6.2E-20 129.1 9.3 116 186-329 25-143 (153)
70 3hf7_A Uncharacterized CBS-dom 99.6 2E-15 6.7E-20 125.3 9.2 118 186-328 7-126 (130)
71 2o16_A Acetoin utilization pro 99.6 4.8E-15 1.6E-19 127.5 11.9 128 183-328 7-134 (160)
72 3fv6_A YQZB protein; CBS domai 99.6 5.4E-15 1.8E-19 127.0 11.8 119 184-328 20-143 (159)
73 2yvy_A MGTE, Mg2+ transporter 99.6 3.7E-15 1.3E-19 140.2 11.7 117 272-412 136-257 (278)
74 3lfr_A Putative metal ION tran 99.6 1.4E-15 4.8E-20 127.2 7.4 117 186-328 8-126 (136)
75 2p9m_A Hypothetical protein MJ 99.6 6.4E-15 2.2E-19 123.0 11.3 119 184-328 11-135 (138)
76 2yzi_A Hypothetical protein PH 99.6 1E-14 3.6E-19 121.8 12.5 121 183-329 9-129 (138)
77 1o50_A CBS domain-containing p 99.6 1.8E-14 6.1E-19 123.4 14.0 133 184-328 19-152 (157)
78 2rih_A Conserved protein with 99.6 2.1E-14 7E-19 120.6 14.0 119 184-327 8-126 (141)
79 3lqn_A CBS domain protein; csg 99.6 3.7E-15 1.3E-19 126.5 9.4 122 186-329 20-143 (150)
80 3fhm_A Uncharacterized protein 99.6 2.2E-14 7.4E-19 124.0 13.9 115 189-328 35-149 (165)
81 3ocm_A Putative membrane prote 99.6 1.7E-14 5.7E-19 126.0 13.0 121 180-329 35-157 (173)
82 1pvm_A Conserved hypothetical 99.6 1.3E-14 4.6E-19 127.7 12.4 123 183-329 11-133 (184)
83 3k2v_A Putative D-arabinose 5- 99.6 8.9E-15 3E-19 124.2 10.3 117 183-325 30-148 (149)
84 2rc3_A CBS domain; in SITU pro 99.6 1E-14 3.5E-19 121.5 10.4 114 189-328 17-130 (135)
85 2uv4_A 5'-AMP-activated protei 99.6 3E-14 1E-18 121.3 13.4 115 189-327 29-149 (152)
86 2nyc_A Nuclear protein SNF4; b 99.6 1.8E-14 6.2E-19 121.0 11.9 119 186-328 16-140 (144)
87 4gqw_A CBS domain-containing p 99.6 1.1E-14 3.8E-19 123.4 10.5 133 184-328 8-142 (152)
88 2emq_A Hypothetical conserved 99.6 2.6E-14 8.7E-19 122.2 12.3 125 183-329 13-139 (157)
89 3l2b_A Probable manganase-depe 99.6 9.6E-14 3.3E-18 127.9 17.1 212 85-327 7-242 (245)
90 3ctu_A CBS domain protein; str 99.6 7.1E-15 2.4E-19 125.6 8.8 122 185-329 19-142 (156)
91 2yvy_A MGTE, Mg2+ transporter 99.6 3.3E-14 1.1E-18 133.7 14.2 121 178-329 132-257 (278)
92 3oi8_A Uncharacterized protein 99.6 1.8E-14 6.1E-19 123.4 11.2 115 182-324 39-155 (156)
93 1y5h_A Hypothetical protein RV 99.6 2.8E-15 9.6E-20 124.5 5.7 116 186-327 13-129 (133)
94 3sl7_A CBS domain-containing p 99.5 8.8E-15 3E-19 127.9 7.7 137 186-328 9-155 (180)
95 2oux_A Magnesium transporter; 99.5 3.5E-14 1.2E-18 134.0 12.0 121 178-329 134-259 (286)
96 2d4z_A Chloride channel protei 99.5 1.1E-13 3.7E-18 127.7 14.4 142 182-328 14-245 (250)
97 3pc3_A CG1753, isoform A; CBS, 99.5 4.1E-14 1.4E-18 144.8 12.4 123 271-412 384-511 (527)
98 2zy9_A Mg2+ transporter MGTE; 99.5 1.4E-13 4.7E-18 138.8 15.6 121 178-329 152-277 (473)
99 1yav_A Hypothetical protein BS 99.5 2.1E-14 7.1E-19 123.2 7.9 121 186-328 19-141 (159)
100 4fry_A Putative signal-transdu 99.5 1.2E-13 3.9E-18 118.2 12.4 116 189-330 21-136 (157)
101 2pfi_A Chloride channel protei 99.5 4.9E-14 1.7E-18 121.2 10.0 123 186-328 18-146 (164)
102 2j9l_A Chloride channel protei 99.5 5.3E-14 1.8E-18 123.5 10.2 138 186-328 16-164 (185)
103 2zy9_A Mg2+ transporter MGTE; 99.5 8.1E-14 2.8E-18 140.5 11.1 116 272-411 156-276 (473)
104 3org_A CMCLC; transporter, tra 99.4 3.7E-14 1.3E-18 148.0 5.0 139 271-411 453-624 (632)
105 3usb_A Inosine-5'-monophosphat 99.4 7.5E-13 2.6E-17 134.3 13.5 114 275-411 117-233 (511)
106 3usb_A Inosine-5'-monophosphat 99.4 1.2E-11 4.1E-16 125.4 16.9 115 186-328 118-233 (511)
107 1zfj_A Inosine monophosphate d 99.4 4.2E-12 1.4E-16 128.9 13.6 115 274-411 93-210 (491)
108 3pc3_A CG1753, isoform A; CBS, 99.3 1.9E-12 6.4E-17 132.5 10.1 122 182-329 385-511 (527)
109 4fxs_A Inosine-5'-monophosphat 99.3 4.9E-13 1.7E-17 135.2 5.1 114 274-410 92-207 (496)
110 1me8_A Inosine-5'-monophosphat 99.3 2.1E-13 7.3E-18 138.4 0.1 113 277-411 103-220 (503)
111 1vrd_A Inosine-5'-monophosphat 99.3 3.2E-13 1.1E-17 137.1 0.1 116 273-411 97-214 (494)
112 4avf_A Inosine-5'-monophosphat 99.3 5E-13 1.7E-17 135.0 0.1 114 273-410 90-205 (490)
113 1me8_A Inosine-5'-monophosphat 99.2 7.5E-13 2.6E-17 134.3 0.6 165 187-399 103-269 (503)
114 4af0_A Inosine-5'-monophosphat 99.2 1.7E-12 5.8E-17 128.7 2.4 162 120-327 92-256 (556)
115 3org_A CMCLC; transporter, tra 99.2 2.8E-12 9.5E-17 133.8 3.9 137 183-326 455-622 (632)
116 1zfj_A Inosine monophosphate d 99.2 1.1E-10 3.6E-15 118.5 15.2 115 186-328 95-210 (491)
117 4af0_A Inosine-5'-monophosphat 99.2 1.2E-12 4.2E-17 129.7 0.0 109 277-409 144-255 (556)
118 4fxs_A Inosine-5'-monophosphat 99.2 1.2E-11 4.2E-16 124.9 6.4 114 185-328 93-208 (496)
119 1vrd_A Inosine-5'-monophosphat 99.1 1.2E-11 4.1E-16 125.5 3.2 114 185-328 99-214 (494)
120 4avf_A Inosine-5'-monophosphat 99.1 2.2E-11 7.6E-16 122.9 4.8 113 185-328 92-206 (490)
121 1jcn_A Inosine monophosphate d 99.1 9.1E-13 3.1E-17 134.4 -7.1 117 273-410 110-231 (514)
122 2cu0_A Inosine-5'-monophosphat 99.1 1.3E-11 4.5E-16 124.9 0.2 109 276-410 98-206 (486)
123 1jcn_A Inosine monophosphate d 98.9 6.4E-11 2.2E-15 120.7 -1.7 118 185-327 112-231 (514)
124 2cu0_A Inosine-5'-monophosphat 98.9 1.6E-10 5.3E-15 117.0 0.9 161 186-402 98-258 (486)
125 1z0n_A 5'-AMP-activated protei 98.9 1.1E-09 3.7E-14 85.3 4.3 36 1-37 57-92 (96)
126 3ghd_A A cystathionine beta-sy 98.9 3.8E-09 1.3E-13 77.2 6.4 46 281-327 2-47 (70)
127 3ghd_A A cystathionine beta-sy 98.8 7.2E-09 2.5E-13 75.7 6.9 46 191-243 2-47 (70)
128 2qlv_B Protein SIP2, protein S 98.7 7.2E-09 2.5E-13 94.7 4.0 36 1-37 54-89 (252)
129 3nme_A Ptpkis1 protein, SEX4 g 98.6 2.2E-08 7.6E-13 94.3 5.1 33 1-34 220-253 (294)
130 3fio_A A cystathionine beta-sy 98.6 7.9E-08 2.7E-12 69.7 6.4 47 281-328 2-48 (70)
131 3fio_A A cystathionine beta-sy 98.5 2E-07 6.7E-12 67.6 7.4 47 363-411 2-48 (70)
132 4aee_A Alpha amylase, catalyti 94.2 0.017 5.8E-07 60.7 2.4 30 1-30 68-102 (696)
133 3fil_A Immunoglobulin G-bindin 75.6 0.65 2.2E-05 30.2 0.3 12 6-17 39-50 (56)
134 1igd_A Protein G; immunoglobul 74.9 0.8 2.7E-05 30.5 0.6 12 6-17 44-55 (61)
135 1mhx_A Immunoglobulin-binding 74.8 0.82 2.8E-05 30.3 0.6 13 6-18 48-60 (65)
136 1pgx_A Protein G; immunoglobul 62.1 1.8 6.2E-05 30.5 0.2 13 6-18 52-64 (83)
137 4aef_A Neopullulanase (alpha-a 60.7 3.4 0.00012 42.6 2.1 18 2-19 66-83 (645)
138 4gln_D D-RFX001; heterochiral 60.4 2.6 8.8E-05 27.5 0.7 14 4-17 36-50 (56)
139 2khu_A Immunoglobulin G-bindin 46.7 4.1 0.00014 30.4 0.0 13 6-18 39-51 (108)
140 1tif_A IF3-N, translation init 45.6 38 0.0013 24.3 5.0 28 302-329 13-40 (78)
141 1tif_A IF3-N, translation init 36.6 50 0.0017 23.7 4.4 25 384-409 13-37 (78)
142 1zxh_A Immunoglobulin G bindin 34.9 8.3 0.00028 25.5 0.0 13 6-18 39-51 (56)
143 1svj_A Potassium-transporting 34.5 17 0.00056 30.0 1.8 35 372-408 121-155 (156)
144 1pn5_A Nacht-, LRR- and PYD-co 28.4 12 0.00042 30.9 0.0 13 6-18 39-51 (159)
145 3c8d_A Enterochelin esterase; 23.0 55 0.0019 31.1 3.6 25 8-32 124-149 (403)
146 3k2t_A LMO2511 protein; lister 20.9 1.4E+02 0.0047 19.9 4.1 30 368-397 11-40 (57)
No 1
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=100.00 E-value=4.3e-41 Score=324.58 Aligned_cols=305 Identities=26% Similarity=0.459 Sum_probs=245.8
Q ss_pred hHHHHHHHHHHHHHhhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHh
Q 015103 68 EADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL 147 (413)
Q Consensus 68 ~~~~~~~~~~~~~fl~~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~ 147 (413)
+++.+...+++.+||++++|||+||.+.++++++.+.|+.+|++.|.+++++++||||++.++++|++|..|++.++.++
T Consensus 13 ~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~ 92 (323)
T 3t4n_C 13 SIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYY 92 (323)
T ss_dssp HHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHH
Confidence 45556678999999999999999999999999999999999999999999999999998888999999999999988766
Q ss_pred ccCCCCCCHHHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCc
Q 015103 148 GTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSC 227 (413)
Q Consensus 148 ~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~ 227 (413)
+..+.. .+.++.+....|++...... .|.++++++.+++++.+|++.|.+++++++||++++...+ .
T Consensus 93 ~~~~~~--~~~l~~~~~~~v~~i~~~~~----------~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~-~ 159 (323)
T 3t4n_C 93 FSNPDK--FELVDKLQLDGLKDIERALG----------VDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETH-R 159 (323)
T ss_dssp HHCGGG--GGGGGGCBHHHHHHHHHHTT----------C----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTC-C
T ss_pred HcCcch--hHHHHHHHHHHHHHHHHHhC----------CCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCC-c
Confidence 543322 23455556666766654432 6788999999999999999999999999999998632222 1
Q ss_pred cceEEEeehhhHHHHHHhhccCCCCCccccccccccccccccccccccc---CCCCceEecCCCCHHHHHHHHHhCCCCE
Q 015103 228 QEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEA---NGRPFAMLRPTASLGSALALLVQADVSS 304 (413)
Q Consensus 228 ~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~---m~~~~~~v~~~~~l~~a~~~m~~~~~~~ 304 (413)
.+++|++|.+|+++++..+... ......+ ++++ |.++++++.+++++.+|++.|.++++++
T Consensus 160 ~~l~Givt~~di~~~l~~~~~~----~~~~~~~------------v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~ 223 (323)
T 3t4n_C 160 EIVVSVLTQYRILKFVALNCRE----THFLKIP------------IGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSS 223 (323)
T ss_dssp EEEEEEEEHHHHHHHHHHHCGG----GGGCCSB------------GGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSE
T ss_pred cceEEEecHHHHHHHHHhcCCc----hhhhhCc------------HHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCE
Confidence 1299999999999998765432 1122223 3444 7778999999999999999999999999
Q ss_pred EEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCC
Q 015103 305 IPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGV 384 (413)
Q Consensus 305 lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~ 384 (413)
+||+|++|+++|++|.+|+++++..+.+... +.++++++..... ...++++|.+++++.+|+++|.++++
T Consensus 224 ~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~---~~~v~~~m~~~~~-------~~~~~~~v~~~~~l~~~~~~m~~~~~ 293 (323)
T 3t4n_C 224 VPIIDENGYLINVYEAYDVLGLIKGGIYNDL---SLSVGEALMRRSD-------DFEGVYTCTKNDKLSTIMDNIRKARV 293 (323)
T ss_dssp EEEECTTCBEEEEEETTHHHHHHHTTHHHHT---TSBHHHHGGGSCT-------TCCCCEEECTTCBHHHHHHHHHHSCC
T ss_pred EEEECCCCeEEEEEeHHHHHHHHhhchhhhc---cCCHHHHHhhccc-------cCCCCEEECCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999997765543332 3578875542110 00268999999999999999999999
Q ss_pred CEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 385 RRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 385 ~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+++||+| ++|+++|+||.+||++++++
T Consensus 294 ~~l~Vvd-~~~~l~Giit~~Dil~~l~~ 320 (323)
T 3t4n_C 294 HRFFVVD-DVGRLVGVLTLSDILKYILL 320 (323)
T ss_dssp CEEEEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred CEEEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence 9999999 58999999999999999975
No 2
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=100.00 E-value=2.6e-35 Score=285.39 Aligned_cols=303 Identities=22% Similarity=0.437 Sum_probs=236.7
Q ss_pred HHHHHHHHHHHHHhhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhc
Q 015103 69 ADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG 148 (413)
Q Consensus 69 ~~~~~~~~~~~~fl~~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~ 148 (413)
.+.+...+.+.+||.+++++|+|+.+.++++++.+.|+.+|++.|.+++++++||||.+.++++|++|..|++.++....
T Consensus 6 ~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~ 85 (334)
T 2qrd_G 6 ETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYY 85 (334)
T ss_dssp HHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHh
Confidence 44556788999999999999999999999999999999999999999999999999988788999999999998776543
Q ss_pred cCCCCC-CHHHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCc--EEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCC
Q 015103 149 TNGSNL-TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPL--VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAG 225 (413)
Q Consensus 149 ~~~~~l-~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g 225 (413)
...... ..+.+....+..+++.... +|..++ +++.+++++.+|++.|.+++++++||++++ .+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~i~~~l~~------------im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~--~~ 151 (334)
T 2qrd_G 86 QSSSFPEAIAEIDKFRLLGLREVERK------------IGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVD--GE 151 (334)
T ss_dssp HHCSCGGGGGGGGSCBHHHHHHHHHH------------HTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEE--TT
T ss_pred hccCCccHHHHHhhhchhhHHHHHHh------------hccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCC--CC
Confidence 210000 0123345566666655432 345556 999999999999999999999999999752 11
Q ss_pred -CccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccccccccc---cCCCCceEecCCCCHHHHHHHHHhCC
Q 015103 226 -SCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE---ANGRPFAMLRPTASLGSALALLVQAD 301 (413)
Q Consensus 226 -~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~---~m~~~~~~v~~~~~l~~a~~~m~~~~ 301 (413)
....++|++|.+|+++++....... ..... .+++ +|.+++.++.+++++.+|++.|.+++
T Consensus 152 ~~~~~~~Givt~~dl~~~~~~~~~~~----~~~~~------------~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~ 215 (334)
T 2qrd_G 152 TGSEMIVSVLTQYRILKFISMNCKET----AMLRV------------PLNQMTIGTWSNLATASMETKVYDVIKMLAEKN 215 (334)
T ss_dssp TTEEEEEEEEEHHHHHHHHHHHCGGG----GGCCC------------BGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHT
T ss_pred cCccceEEEeeHHHHHHHHHhhccch----hhhhC------------cHHHhCCcccCCceEECCCCcHHHHHHHHHHcC
Confidence 0012999999999999886532110 11112 2333 47788999999999999999999999
Q ss_pred CCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhc
Q 015103 302 VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLAN 381 (413)
Q Consensus 302 ~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~ 381 (413)
++++||+|++|+++|++|.+|++..+..+.+... +.++.+++..... . + +++++|.+++++.+|++.|.+
T Consensus 216 ~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~---~~~v~~~m~~~~~---~--~--~~~~~v~~~~~l~~~~~~m~~ 285 (334)
T 2qrd_G 216 ISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNL---DLSVGEALLKRPA---N--F--DGVHTCRATDRLDGIFDAIKH 285 (334)
T ss_dssp CSEEEEECTTCBEEEEEETHHHHHHHTTSCGGGG---GSBHHHHHTTCCT---T--C--CCCCEECTTCBHHHHHHHHHH
T ss_pred CcEEEEEcCCCcEEEEEEHHHHHHHhhccccccc---cCcHHHHHhcccc---c--C--CCCEEECCCCcHHHHHHHHHH
Confidence 9999999988999999999999987664432222 3567774431000 0 0 368899999999999999999
Q ss_pred CCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 382 PGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 382 ~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
++++++|||| ++|+++|+||++||++++..
T Consensus 286 ~~~~~l~Vvd-~~g~l~Giit~~dil~~~~~ 315 (334)
T 2qrd_G 286 SRVHRLFVVD-ENLKLEGILSLADILNYIIY 315 (334)
T ss_dssp SCCCEEEEEC-TTCBEEEEEEHHHHHHHHHS
T ss_pred cCCCEEEEEC-CCCeEEEEEeHHHHHHHHHh
Confidence 9999999999 58999999999999999864
No 3
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=100.00 E-value=7.3e-35 Score=281.87 Aligned_cols=300 Identities=31% Similarity=0.544 Sum_probs=237.8
Q ss_pred HHHHHHHHHhhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCC
Q 015103 73 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS 152 (413)
Q Consensus 73 ~~~~~~~~fl~~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~ 152 (413)
..++.+..||++.+++|+|+.+.++++++.+.|+.+|++.|.+++++++||+|.+.++++|++|..|++..+......+.
T Consensus 23 ~~~~~~~~~l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~ 102 (330)
T 2v8q_E 23 SNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSAL 102 (330)
T ss_dssp CCSCHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccc
Confidence 45677999999999999999999999999999999999999999999999999887789999999999987754321110
Q ss_pred CCCHHHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEE
Q 015103 153 NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY 232 (413)
Q Consensus 153 ~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~G 232 (413)
....++....++.|.+.. +.+|.++++++.+++++.+|++.|.+++++++||+|+ +.| +++|
T Consensus 103 -~~~~~l~~~~~~~~~~~~------------~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~---~~~G 164 (330)
T 2v8q_E 103 -VQIYELEEHKIETWREVY------------LQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP--ESG---NTLY 164 (330)
T ss_dssp -TTCCCGGGCBHHHHHHHH------------SSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT--TTC---CEEE
T ss_pred -cchhHHhhccHHHHHHHH------------hhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeC--CCC---cEEE
Confidence 011233445566665432 2368899999999999999999999999999999953 135 7999
Q ss_pred EeehhhHHHHHHhhccCCCCCcccccccccccccccccccccccCC-CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC
Q 015103 233 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG-RPFAMLRPTASLGSALALLVQADVSSIPIVDDN 311 (413)
Q Consensus 233 ivt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 311 (413)
++|.+|+++++.......+. ......++.++.+ |. +++.++.+++++.+|++.|.+++++++||+|++
T Consensus 165 ivt~~dl~~~~~~~~~~~~~-~~~~~~~v~~~~v----------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~ 233 (330)
T 2v8q_E 165 ILTHKRILKFLKLFITEFPK-PEFMSKSLEELQI----------GTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK 233 (330)
T ss_dssp EECHHHHHHHHHHHSCSSSC-CGGGGSBHHHHTC----------SBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT
T ss_pred EEcHHHHHHHHHHHhhccCc-hhhhcCCHHHhcc----------cCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCC
Confidence 99999999988664332110 0112233333321 33 578899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEe
Q 015103 312 DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE 391 (413)
Q Consensus 312 g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd 391 (413)
|+++|++|.+|++.....+.+... +.++.+++.... .|.+++++|.+++++.+|+++|.+++++++||+|
T Consensus 234 ~~l~Giit~~dl~~~~~~~~~~~~---~~~v~~~~~~~~-------~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd 303 (330)
T 2v8q_E 234 GRVVDIYSKFDVINLAAEKTYNNL---DVSVTKALQHRS-------HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD 303 (330)
T ss_dssp SBEEEEEEGGGTGGGGGSSCCCCC---SSBHHHHGGGCC-------SCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred CcEEEEEEHHHHHHHHhccccccc---cCcHHHHHhccc-------cccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEc
Confidence 999999999999886654322211 357777664321 3457899999999999999999999999999999
Q ss_pred CCCCeEEEEEehHHHHHHhhc
Q 015103 392 AGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 392 ~~~~~liGvIS~~DIl~~l~~ 412 (413)
++|+++|+||.+||++++..
T Consensus 304 -~~g~l~Giit~~Dil~~~~~ 323 (330)
T 2v8q_E 304 -EHDVVKGIVSLSDILQALVL 323 (330)
T ss_dssp -TTSBEEEEEEHHHHHHHHHS
T ss_pred -CCCcEEEEEeHHHHHHHHHh
Confidence 58999999999999999863
No 4
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=100.00 E-value=3.6e-32 Score=256.14 Aligned_cols=269 Identities=14% Similarity=0.284 Sum_probs=208.5
Q ss_pred cccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhhccHH
Q 015103 86 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS 165 (413)
Q Consensus 86 ~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~~i~ 165 (413)
++.+.+.. .++++++.+.|+.+|++.|.+++++++||+|++.++++|++|..|++.++..... ...+......
T Consensus 4 ~v~~~i~~-~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~------~~~~~~~~~~ 76 (280)
T 3kh5_A 4 RVMKIAQN-KKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSK------YNLIREKHER 76 (280)
T ss_dssp BGGGTSCC-SCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGG------GHHHHTTSTT
T ss_pred hHHHHhcC-CCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccch------hhhhhhcccc
Confidence 34555543 3799999999999999999999999999999866789999999999976531110 0111110000
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHh
Q 015103 166 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR 245 (413)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~ 245 (413)
.... . ....++++|.++++++.+++++.+|++.|.+++++++||+|+ +| +++|++|.+|+++++..
T Consensus 77 ~~~~---~-----~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~ 142 (280)
T 3kh5_A 77 NFLA---A-----INEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVND---EN---QLISLITERDVIRALLD 142 (280)
T ss_dssp CHHH---H-----TTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHHHHHGG
T ss_pred chhH---H-----hhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcC---CC---EEEEEEEHHHHHHHHhh
Confidence 0000 0 012234578889999999999999999999999999999965 45 89999999999987654
Q ss_pred hccCCCCCcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 246 HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 246 ~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
.... . ..++++|.+++.++.+++++.++++.|.+++++++||+ ++|+++|++|.+|++.
T Consensus 143 ~~~~--------~------------~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~ 201 (280)
T 3kh5_A 143 KIDE--------N------------EVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIK 201 (280)
T ss_dssp GSCT--------T------------CBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHH
T ss_pred cCCC--------C------------CCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHH
Confidence 3211 1 13556688889999999999999999999999999999 5899999999999998
Q ss_pred HHhhhhh-hhcc------cCcccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEE
Q 015103 326 LAKDKAY-AQIH------LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 398 (413)
Q Consensus 326 ~~~~~~~-~~~~------l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~li 398 (413)
....+.. .... ..+.++.+ +|.+++++|++++++.+|++.|.+++++++||+| ++|+++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~-------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~~g~~~ 267 (280)
T 3kh5_A 202 LLGSDWAFNHMQTGNVREITNVRMEE-------------IMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVD-ENLRIK 267 (280)
T ss_dssp HHTSHHHHHHHHSCCTHHHHHCBHHH-------------HSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEEC-TTCBEE
T ss_pred HHhhhhhhhhhcccchhhhhCCcHHH-------------HhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEEC-CCCeEE
Confidence 7653221 1100 00223433 6777899999999999999999999999999999 588999
Q ss_pred EEEehHHHHHHh
Q 015103 399 GIISLSDVFRFL 410 (413)
Q Consensus 399 GvIS~~DIl~~l 410 (413)
|+||++||++++
T Consensus 268 Givt~~dil~~l 279 (280)
T 3kh5_A 268 GIITEKDVLKYF 279 (280)
T ss_dssp EEEEHHHHGGGG
T ss_pred EEEeHHHHHHhh
Confidence 999999999987
No 5
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=100.00 E-value=2e-32 Score=260.64 Aligned_cols=264 Identities=10% Similarity=0.104 Sum_probs=210.1
Q ss_pred hCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhhcc
Q 015103 84 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 163 (413)
Q Consensus 84 ~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~~ 163 (413)
..++.|+|. .++++++.+.|+.+|++.|.++++.++||+| ++++|++|..|++..+...... ...
T Consensus 19 ~~~V~dim~--~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d---~~l~GivT~~Di~~~~~~~~~~----------~~~ 83 (296)
T 3ddj_A 19 GMNIETLMI--KNPPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKD----------SCS 83 (296)
T ss_dssp CSSGGGTCE--ESCCEECTTSBHHHHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC-------------CC
T ss_pred ccCHHHhcc--CCCcEECCCccHHHHHHHHHHCCCceEEEEC---CeEEEEEeHHHHHHHhcccccc----------ccc
Confidence 356888885 4799999999999999999999999999999 6799999999999765321100 001
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHH
Q 015103 164 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 243 (413)
Q Consensus 164 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l 243 (413)
...+... ....++++|.++++++.+++++.+|+++|.+++++++||+|+ +| +++|++|.+|+++++
T Consensus 84 ~~~~~~~--------~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---~~---~lvGivt~~dl~~~~ 149 (296)
T 3ddj_A 84 QGDLYHI--------STTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDI---ND---KPVGIVTEREFLLLY 149 (296)
T ss_dssp HHHHHHH--------HTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHGGGG
T ss_pred chhhHHH--------hcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHhh
Confidence 1111111 012234578889999999999999999999999999999965 45 899999999998754
Q ss_pred HhhccCCCCCcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHH
Q 015103 244 CRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 323 (413)
Q Consensus 244 ~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl 323 (413)
.... ...+++++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+
T Consensus 150 ~~~~---------------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl 208 (296)
T 3ddj_A 150 KDLD---------------------EIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNA 208 (296)
T ss_dssp GGSC---------------------CCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred hccc---------------------ccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHH
Confidence 2211 0124566688899999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhcc---cCcccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEE
Q 015103 324 TALAKDKAYAQIH---LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 400 (413)
Q Consensus 324 ~~~~~~~~~~~~~---l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGv 400 (413)
+..+.... .... ..+.++.+ +|.+++++|.+++++.+|++.|.+++++++||+| ++|+++|+
T Consensus 209 ~~~~~~~~-~~~~~~~~~~~~v~~-------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~~g~~~Gi 273 (296)
T 3ddj_A 209 IKQLAKAV-DKLDPDYFYGKVVKD-------------VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILN-KDNTIRGI 273 (296)
T ss_dssp HHHHHHHH-HHTCTHHHHTCBHHH-------------HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEE
T ss_pred HHHHHHHH-hhcChhhhcCcCHHH-------------HhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEE
Confidence 98665221 1110 01234544 6777899999999999999999999999999999 58999999
Q ss_pred EehHHHHHHhhc
Q 015103 401 ISLSDVFRFLLG 412 (413)
Q Consensus 401 IS~~DIl~~l~~ 412 (413)
||++||++++..
T Consensus 274 it~~Dil~~l~~ 285 (296)
T 3ddj_A 274 ITERDLLIALHH 285 (296)
T ss_dssp EEHHHHHHHHHH
T ss_pred EcHHHHHHHHHH
Confidence 999999999853
No 6
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.96 E-value=9.1e-30 Score=240.19 Aligned_cols=263 Identities=17% Similarity=0.246 Sum_probs=182.4
Q ss_pred ccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhhccHHH
Q 015103 87 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISA 166 (413)
Q Consensus 87 ~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~~i~~ 166 (413)
+.|+|- .++++++.+.|+.+|++.|.++++..+||+|.+ ++++|++|..|++..+.. .
T Consensus 3 v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~-~~~~Giv~~~dl~~~~~~---------------~---- 60 (282)
T 2yzq_A 3 VKTIMT--QNPVTITLPATRNYALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPDE---------------E---- 60 (282)
T ss_dssp HHHHSE--ESCCCEESSCC------------CCEEEEECTT-CCEEEEEESSCC--------------------------
T ss_pred hHHhcc--CCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhhhcc---------------C----
Confidence 344553 468889999999999999999999999999974 579999999998743210 0
Q ss_pred HHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHH-HHHh
Q 015103 167 WKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CICR 245 (413)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~-~l~~ 245 (413)
.++++|.++++++.+++++.+|++.|.+++++.+||+|+ +| +++|++|.+|+++ ++..
T Consensus 61 ---------------~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~---~~---~~~Giit~~di~~~~~~~ 119 (282)
T 2yzq_A 61 ---------------QLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS---KG---KPVGILTVGDIIRRYFAK 119 (282)
T ss_dssp ------------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTTT
T ss_pred ---------------CHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHhc
Confidence 012357777899999999999999999999999999975 35 8999999999987 5432
Q ss_pred hccCCCCCcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHH-
Q 015103 246 HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT- 324 (413)
Q Consensus 246 ~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~- 324 (413)
. . ... ...++++|.+++.++.+++++.++++.|.+++++++||+|++|+++|++|..|++
T Consensus 120 ~--~-----~~~------------~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~ 180 (282)
T 2yzq_A 120 S--E-----KYK------------GVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLR 180 (282)
T ss_dssp C--S-----GGG------------GCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGG
T ss_pred c--C-----Ccc------------cCcHHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhh
Confidence 1 0 000 1235566888899999999999999999999999999999889999999999998
Q ss_pred -----HHHhhhh--hhh-c-ccCcccHHHHHh--cCCCCCCCcc-cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeC
Q 015103 325 -----ALAKDKA--YAQ-I-HLDEMNIHQALQ--LGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA 392 (413)
Q Consensus 325 -----~~~~~~~--~~~-~-~l~~~~v~~~l~--~~~~~~~~~~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~ 392 (413)
+...... ... . .+.......... .......+++ +|++++.+|++++++.+|+++|.+++++++||+|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd- 259 (282)
T 2yzq_A 181 DSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIR- 259 (282)
T ss_dssp CGGGCC--------------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-
T ss_pred hhhhhhhhccchhhhhhhhhhhcccchHHHHhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEEC-
Confidence 3221000 000 0 000000000000 0001122343 8888999999999999999999999999999999
Q ss_pred CCCeEEEEEehHHHHHHhhc
Q 015103 393 GSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 393 ~~~~liGvIS~~DIl~~l~~ 412 (413)
++|+++|+||++||++++..
T Consensus 260 ~~~~lvGiit~~Dil~~~~~ 279 (282)
T 2yzq_A 260 GEGDLIGLIRDFDLLKVLVK 279 (282)
T ss_dssp TTTEEEEEEEHHHHGGGGCC
T ss_pred CCCCEEEEEeHHHHHHHHHh
Confidence 57899999999999998753
No 7
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.91 E-value=1.9e-23 Score=196.30 Aligned_cols=195 Identities=18% Similarity=0.331 Sum_probs=156.3
Q ss_pred CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccc-cccc
Q 015103 186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP-VSSI 264 (413)
Q Consensus 186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~-i~~l 264 (413)
+|.++++++++++|+.+|+++|.+++++++||+++ ++| +++|++|.+||++++...... ..+... ...+
T Consensus 9 i~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~--~~~---~~~Givt~~di~~~~~~~~~~-----~~~~~~~~~~~ 78 (280)
T 3kh5_A 9 AQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNA--GNN---KVVGIITSMDIVDFMGGGSKY-----NLIREKHERNF 78 (280)
T ss_dssp SCCSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECT--TTC---BEEEEEEHHHHHHHTTTSGGG-----HHHHTTSTTCH
T ss_pred hcCCCcEEECCCCcHHHHHHHHHhCCCcEeeEEEC--CCC---eEEEEEEHHHHHHHhcccchh-----hhhhhccccch
Confidence 67889999999999999999999999999999963 245 899999999999976432110 000000 0000
Q ss_pred ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHH
Q 015103 265 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ 344 (413)
Q Consensus 265 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~ 344 (413)
......+++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++........ ..++++
T Consensus 79 -~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~-----~~~v~~ 152 (280)
T 3kh5_A 79 -LAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDE-----NEVIDD 152 (280)
T ss_dssp -HHHTTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGSCT-----TCBSGG
T ss_pred -hHHhhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcCCC-----CCCHHH
Confidence 11112467788999999999999999999999999999999999999999999999999866533211 123333
Q ss_pred HHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 345 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 345 ~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
+|.+++.++.+++++.++++.|.+++.+++||++ +|+++|+||.+|+++++.
T Consensus 153 -------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Givt~~dl~~~~~ 204 (280)
T 3kh5_A 153 -------------YITRDVIVATPGERLKDVARTMVRNGFRRLPVVS--EGRLVGIITSTDFIKLLG 204 (280)
T ss_dssp -------------GCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHT
T ss_pred -------------HhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHh
Confidence 6777889999999999999999999999999996 689999999999999874
No 8
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.89 E-value=4.2e-23 Score=196.08 Aligned_cols=194 Identities=18% Similarity=0.208 Sum_probs=157.8
Q ss_pred CCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccc
Q 015103 181 DGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 260 (413)
Q Consensus 181 ~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~ 260 (413)
-.++++|.++++++++++|+.+|++.|.+++++++||++ | +++|++|.+||++++...... ...
T Consensus 20 ~~V~dim~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-----~---~l~GivT~~Di~~~~~~~~~~--------~~~ 83 (296)
T 3ddj_A 20 MNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN-----E---KIEGLLTTRDLLSTVESYCKD--------SCS 83 (296)
T ss_dssp SSGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEES-----S---SEEEEEEHHHHHGGGTTCC-----------CC
T ss_pred cCHHHhccCCCcEECCCccHHHHHHHHHHCCCceEEEEC-----C---eEEEEEeHHHHHHHhcccccc--------ccc
Confidence 344568999999999999999999999999999999994 4 899999999999865321110 000
Q ss_pred ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcc
Q 015103 261 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEM 340 (413)
Q Consensus 261 i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~ 340 (413)
...+ ......+++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++....... ...
T Consensus 84 ~~~~-~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~~~------~~~ 156 (296)
T 3ddj_A 84 QGDL-YHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLD------EIF 156 (296)
T ss_dssp HHHH-HHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGGSC------CCC
T ss_pred chhh-HHHhcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhccc------ccc
Confidence 1100 001123577789889999999999999999999999999999998999999999999987554221 134
Q ss_pred cHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 341 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 341 ~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
++++ +|.+++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..||++++.
T Consensus 157 ~v~~-------------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~~~~~Givt~~dl~~~~~ 213 (296)
T 3ddj_A 157 PVKV-------------FMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVID-DDNKVVGIVTVVNAIKQLA 213 (296)
T ss_dssp BHHH-------------HSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHH
T ss_pred cHHH-------------hhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCEEEEEEEHHHHHHHHH
Confidence 6666 5666889999999999999999999999999999 5899999999999998864
No 9
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.87 E-value=9.9e-22 Score=189.58 Aligned_cols=206 Identities=17% Similarity=0.249 Sum_probs=159.8
Q ss_pred CCC--CCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccc
Q 015103 185 RPC--PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS 262 (413)
Q Consensus 185 ~~~--~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~ 262 (413)
++| ..+++++++++++.+|++.|.+++++++||+++ +.+ +++|++|.+|++.++...+.... .....+.
T Consensus 39 dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~--~~~---~~vGivt~~Dll~~l~~~~~~~~----~~~~~l~ 109 (330)
T 2v8q_E 39 DLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDS--KKQ---SFVGMLTITDFINILHRYYKSAL----VQIYELE 109 (330)
T ss_dssp GGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEET--TTT---EEEEEEEHHHHHHHHHHHHHHHT----TTCCCGG
T ss_pred hhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeC--CCC---eEEEEEEHHHHHHHHHHHHhccc----cchhHHh
Confidence 467 778999999999999999999999999999975 224 79999999999998765431100 0011122
Q ss_pred ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhhhhhh--hcccCc
Q 015103 263 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYA--QIHLDE 339 (413)
Q Consensus 263 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~dl~~~~~~~~~~--~~~l~~ 339 (413)
...+..|...++++|.++++++.+++++.+|++.|.+++++++||+|+ +|+++|++|..|++......... ...+..
T Consensus 110 ~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~ 189 (330)
T 2v8q_E 110 EHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMS 189 (330)
T ss_dssp GCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCGGGG
T ss_pred hccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchhhhc
Confidence 223344444567789999999999999999999999999999999998 89999999999999866432110 000112
Q ss_pred ccHHHHHhcCCCCCCCcccCC-CcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 340 MNIHQALQLGQDANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 340 ~~v~~~l~~~~~~~~~~~~m~-~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
.++.+. .+|. +++.++.+++++.++++.|.+++.+++||+| ++|+++|+||..||++++.
T Consensus 190 ~~v~~~-----------~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~~~l~Giit~~dl~~~~~ 250 (330)
T 2v8q_E 190 KSLEEL-----------QIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVD-EKGRVVDIYSKFDVINLAA 250 (330)
T ss_dssp SBHHHH-----------TCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEEC-TTSBEEEEEEGGGTGGGGG
T ss_pred CCHHHh-----------cccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEEC-CCCcEEEEEEHHHHHHHHh
Confidence 334431 0243 5788999999999999999999999999999 5899999999999998764
No 10
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.86 E-value=3.2e-21 Score=185.35 Aligned_cols=199 Identities=17% Similarity=0.252 Sum_probs=150.5
Q ss_pred CCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccc
Q 015103 188 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG 267 (413)
Q Consensus 188 ~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~ 267 (413)
..++++++.++|+.+|++.|.+++++++||+++ +.+ +++|++|.+|++.++...+.... ....+......
T Consensus 39 ~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~--~~~---~lvGilt~~Dl~~~l~~~~~~~~-----~~~~l~~~~~~ 108 (323)
T 3t4n_C 39 SYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDS--KTS---RFAGLLTTTDFINVIQYYFSNPD-----KFELVDKLQLD 108 (323)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHTTCSCEEEEET--TTT---EEEEEECHHHHHHHHHHHHHCGG-----GGGGGGGCBHH
T ss_pred CCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeC--CCC---eEEEEEEHHHHHHHHHHHHcCcc-----hhHHHHHHHHH
Confidence 356889999999999999999999999999974 233 89999999999998765432210 00011111111
Q ss_pred ccc--ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCc-----EEEEEeHHHHHHHHhhhhhhhcccCcc
Q 015103 268 TWV--PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDS-----LLDIYSRSDITALAKDKAYAQIHLDEM 340 (413)
Q Consensus 268 ~~~--~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~-----lvGiit~~dl~~~~~~~~~~~~~l~~~ 340 (413)
.+. .++.++|.++++++.+++++.+|++.|.+++++++||+|+++. ++|++|.+|++..+...... ..+.+.
T Consensus 109 ~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~-~~~~~~ 187 (323)
T 3t4n_C 109 GLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE-THFLKI 187 (323)
T ss_dssp HHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGG-GGGCCS
T ss_pred HHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCc-hhhhhC
Confidence 111 1234557888999999999999999999999999999997775 99999999999866432211 111233
Q ss_pred cHHHHHhcCCCCCCCccc---CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 341 NIHQALQLGQDANPSLGF---NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 341 ~v~~~l~~~~~~~~~~~~---m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
++++ + |.++++++.+++++.+|++.|.+++++++||+| ++|+++|+||.+||++++.
T Consensus 188 ~v~~-------------~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd-~~~~~~Giit~~dl~~~~~ 247 (323)
T 3t4n_C 188 PIGD-------------LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID-ENGYLINVYEAYDVLGLIK 247 (323)
T ss_dssp BGGG-------------TTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEETTHHHHHHH
T ss_pred cHHH-------------cCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEeHHHHHHHHh
Confidence 4444 4 677899999999999999999999999999999 5899999999999999874
No 11
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.85 E-value=1.1e-21 Score=184.69 Aligned_cols=173 Identities=16% Similarity=0.230 Sum_probs=130.4
Q ss_pred CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccc
Q 015103 186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 265 (413)
Q Consensus 186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~ 265 (413)
+|.++++++++++++.+|+++|.+++++++||+++ +| +++|++|.+|+++.+. .
T Consensus 6 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~---~~---~~~Giv~~~dl~~~~~-------------~------- 59 (282)
T 2yzq_A 6 IMTQNPVTITLPATRNYALELFKKYKVRSFPVVNK---EG---KLVGIISVKRILVNPD-------------E------- 59 (282)
T ss_dssp HSEESCCCEESSCC------------CCEEEEECT---TC---CEEEEEESSCC--------------------------
T ss_pred hccCCCeEECCCCcHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEHHHHHhhhc-------------c-------
Confidence 57788999999999999999999999999999964 45 8999999999986321 1
Q ss_pred cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH-HHhhhhhhhcccCcccHHH
Q 015103 266 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQ 344 (413)
Q Consensus 266 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~-~~~~~~~~~~~l~~~~v~~ 344 (413)
.+++++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|+++ .+..+... .+.++++
T Consensus 60 -----~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~----~~~~v~~ 130 (282)
T 2yzq_A 60 -----EQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKY----KGVEIEP 130 (282)
T ss_dssp ---------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCSGG----GGCBSTT
T ss_pred -----CCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccCCc----ccCcHHH
Confidence 2345557778889999999999999999999999999998899999999999988 55432100 0123332
Q ss_pred HHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHH
Q 015103 345 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF 407 (413)
Q Consensus 345 ~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl 407 (413)
+|.++++++.+++++.++++.|.+++++++||+| ++|+++|+||..|++
T Consensus 131 -------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~~~~~Giit~~dl~ 179 (282)
T 2yzq_A 131 -------------YYQRYVSIVWEGTPLKAALKALLLSNSMALPVVD-SEGNLVGIVDETDLL 179 (282)
T ss_dssp -------------TSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEEC-TTSCEEEEEEGGGGG
T ss_pred -------------HhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHh
Confidence 6777889999999999999999999999999999 589999999999998
No 12
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.85 E-value=1.5e-20 Score=181.46 Aligned_cols=208 Identities=15% Similarity=0.162 Sum_probs=152.4
Q ss_pred CCCCC--CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccc
Q 015103 185 RPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS 262 (413)
Q Consensus 185 ~~~~~--~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~ 262 (413)
++|.+ +++++++++|+.+|++.|.+++++++||+++ +.+ +++|+++.+|++.++......... ......+.
T Consensus 26 dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~--~~~---~~vGiv~~~Dl~~~~~~~~~~~~~--~~~~~~~~ 98 (334)
T 2qrd_G 26 DVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDS--EAN---KFAGLLTMADFVNVIKYYYQSSSF--PEAIAEID 98 (334)
T ss_dssp GGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEET--TTT---EEEEEECHHHHHHHHHHHHHHCSC--GGGGGGGG
T ss_pred hhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeC--CCC---eEEEEEEHHHHHHHHHHHhhccCC--ccHHHHHh
Confidence 45654 4789999999999999999999999999975 234 899999999999877543221000 00000111
Q ss_pred ccccccccccccccCCCCc--eEecCCCCHHHHHHHHHhCCCCEEEEEcCCC-c----EEEEEeHHHHHHHHhhhhhhhc
Q 015103 263 SIQLGTWVPRIGEANGRPF--AMLRPTASLGSALALLVQADVSSIPIVDDND-S----LLDIYSRSDITALAKDKAYAQI 335 (413)
Q Consensus 263 ~l~i~~~~~~v~~~m~~~~--~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~----lvGiit~~dl~~~~~~~~~~~~ 335 (413)
...+..+....+++|.+++ +++.+++++.++++.|.+++++++||+|++| + ++|++|..|++.....+... .
T Consensus 99 ~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~-~ 177 (334)
T 2qrd_G 99 KFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKE-T 177 (334)
T ss_dssp SCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGG-G
T ss_pred hhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccc-h
Confidence 1112222222234466666 8999999999999999999999999998765 4 99999999999866532111 1
Q ss_pred ccCcccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 336 HLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 336 ~l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
.+...++++.. .+|.+++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||..||++++.
T Consensus 178 ~~~~~~v~~l~----------~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd-~~~~~~Giit~~dl~~~~~ 242 (334)
T 2qrd_G 178 AMLRVPLNQMT----------IGTWSNLATASMETKVYDVIKMLAEKNISAVPIVN-SEGTLLNVYESVDVMHLIQ 242 (334)
T ss_dssp GGCCCBGGGSS----------CSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEETHHHHHHHT
T ss_pred hhhhCcHHHhC----------CcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEc-CCCcEEEEEEHHHHHHHhh
Confidence 11123333300 03677899999999999999999999999999999 5899999999999999864
No 13
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.82 E-value=2.4e-20 Score=162.67 Aligned_cols=137 Identities=16% Similarity=0.278 Sum_probs=105.9
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhh-hccc--Cccc---HHHH
Q 015103 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA-QIHL--DEMN---IHQA 345 (413)
Q Consensus 272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~-~~~l--~~~~---v~~~ 345 (413)
+++++|+++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++........ ...+ .... ....
T Consensus 19 ~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (170)
T 4esy_A 19 PIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIPAPEVEHL 98 (170)
T ss_dssp BGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHHHHHHH
T ss_pred CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhhhhhccchhhHHhh
Confidence 46778999999999999999999999999999999999999999999999998643211100 0000 0000 0111
Q ss_pred HhcCCCCCCCcc-cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 346 LQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 346 l~~~~~~~~~~~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
... ....+++ +|++++++|++++++.+|+++|.+++++++||+| +|+++|+||++||+++|+.
T Consensus 99 ~~~--~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd--~g~lvGivt~~Dil~~l~~ 162 (170)
T 4esy_A 99 FET--GRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ--DGVPVGIVTRRDLLKLLLL 162 (170)
T ss_dssp HHH--HTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHTTTSCC
T ss_pred hcc--ccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE--CCEEEEEEEHHHHHHHHHh
Confidence 100 0112333 8889999999999999999999999999999999 4899999999999999864
No 14
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.78 E-value=6.1e-19 Score=151.65 Aligned_cols=123 Identities=18% Similarity=0.266 Sum_probs=100.5
Q ss_pred ccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCC
Q 015103 273 IGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ 350 (413)
Q Consensus 273 v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~ 350 (413)
++++|. .+++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+++...........+.+.++.+
T Consensus 17 ~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~------ 90 (156)
T 3k6e_A 17 EETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVH------ 90 (156)
T ss_dssp GGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGG------
T ss_pred HHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHH------
Confidence 344464 478999999999999999999999999999989999999999999986653322211112334433
Q ss_pred CCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 351 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 351 ~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
+|.+++.++++++++.+|++.|.++++ +|||| ++|+++|+||++||++++.
T Consensus 91 -------im~~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd-~~g~l~GiiT~~Dil~~~~ 141 (156)
T 3k6e_A 91 -------MTKTDVAVVSPDFTITEVLHKLVDESF--LPVVD-AEGIFQGIITRKSILKAVN 141 (156)
T ss_dssp -------TCBCSCCCBCTTCCHHHHHHHTTTSSE--EEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred -------hhcCCceecccccHHHHHHHHHHHcCC--eEEEe-cCCEEEEEEEHHHHHHHHH
Confidence 788899999999999999999998764 99999 6899999999999999984
No 15
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.78 E-value=1.6e-18 Score=147.37 Aligned_cols=119 Identities=16% Similarity=0.305 Sum_probs=105.6
Q ss_pred cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103 272 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 348 (413)
Q Consensus 272 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~ 348 (413)
+++++|.+ +++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|++.....+. +.++.+
T Consensus 24 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~---- 92 (148)
T 3lv9_A 24 KIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN-------KIELEE---- 92 (148)
T ss_dssp BGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-------CCCGGG----
T ss_pred CHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC-------CccHHH----
Confidence 57777987 89999999999999999999999999999987 89999999999998654321 234444
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+| ++++++++++++.+|++.|.+++.+++||+| ++|+++|+||+.||++++++
T Consensus 93 ---------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~g~~~Giit~~dil~~l~~ 145 (148)
T 3lv9_A 93 ---------IL-RDIIYISENLTIDKALERIRKEKLQLAIVVD-EYGGTSGVVTIEDILEEIVG 145 (148)
T ss_dssp ---------TC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEEC-TTSSEEEEEEHHHHHHHHHH
T ss_pred ---------hc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence 67 6889999999999999999999999999999 58999999999999999976
No 16
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.78 E-value=1.9e-18 Score=143.61 Aligned_cols=120 Identities=15% Similarity=0.281 Sum_probs=104.5
Q ss_pred cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103 272 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 348 (413)
Q Consensus 272 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~ 348 (413)
+++++|. ..++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|++.....+. .+.++.+
T Consensus 7 ~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~------~~~~v~~---- 76 (130)
T 3i8n_A 7 PVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGS------GQKQLGA---- 76 (130)
T ss_dssp CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTT------TTSBHHH----
T ss_pred CHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCC------CcCCHHH----
Confidence 5677788 456789999999999999999999999999987 89999999999998765332 1346666
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+| +++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||+.||++++++
T Consensus 77 ---------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~~vGivt~~dil~~l~g 129 (130)
T 3i8n_A 77 ---------VM-RPIQVVLNNTALPKVFDQMMTHRLQLALVVD-EYGTVLGLVTLEDIFEHLVG 129 (130)
T ss_dssp ---------HS-EECCEEETTSCHHHHHHHHHHHTCCEEEEEC-TTSCEEEEEEHHHHHHHHHT
T ss_pred ---------Hh-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEc-CCCCEEEEEEHHHHHHHHcC
Confidence 55 3578999999999999999999999999999 58999999999999999986
No 17
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.76 E-value=1.2e-18 Score=144.23 Aligned_cols=120 Identities=13% Similarity=0.369 Sum_probs=101.9
Q ss_pred cccccCCCC--ceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103 272 RIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 348 (413)
Q Consensus 272 ~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~ 348 (413)
+++++|.+. ++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|+++...... .+.++++
T Consensus 4 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~------~~~~v~~---- 73 (127)
T 3nqr_A 4 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA------EAFSMDK---- 73 (127)
T ss_dssp BHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTC------CCCCHHH----
T ss_pred CHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccC------CCCCHHH----
Confidence 466778854 8899999999999999999999999999987 89999999999987553221 1356666
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+|. ++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||++||++++++
T Consensus 74 ---------~m~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~~Giit~~dll~~l~g 126 (127)
T 3nqr_A 74 ---------VLR-TAVVVPESKRVDRMLKEFRSQRYHMAIVID-EFGGVSGLVTIEDILELIVG 126 (127)
T ss_dssp ---------HCB-CCCEEETTCBHHHHHHHHHHTTCCEEEEEC-TTSCEEEEEEHHHHHHHC--
T ss_pred ---------HcC-CCeEECCCCcHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence 453 467999999999999999999999999999 58999999999999999876
No 18
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.76 E-value=3.2e-18 Score=142.35 Aligned_cols=122 Identities=11% Similarity=0.190 Sum_probs=103.4
Q ss_pred cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103 272 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 348 (413)
Q Consensus 272 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~ 348 (413)
+++++|. ++++++.+++++.+|+++|.+++++++||+++ +|+++|++|.+|+++....+.. +...++.+
T Consensus 3 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~----~~~~~v~~---- 74 (130)
T 3hf7_A 3 SVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE----FTKEIMLR---- 74 (130)
T ss_dssp BHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSC----CCHHHHHH----
T ss_pred CHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCc----cchhhHHH----
Confidence 4566785 46889999999999999999999999999975 5899999999999987654321 11234555
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+| ++++++.+++++.+|++.|.+++.+++||+| ++|+++|+||+.||++++++
T Consensus 75 ---------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~lvGiit~~Dil~~l~g 127 (130)
T 3hf7_A 75 ---------AA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD-EYGDIQGLVTVEDILEEIVG 127 (130)
T ss_dssp ---------HS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEEC-TTSCEEEEEEHHHHHHHHHC
T ss_pred ---------hc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEc-CCCCEEEEeeHHHHHHHHhC
Confidence 45 4678999999999999999999999999999 58999999999999999986
No 19
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.76 E-value=4.2e-18 Score=139.44 Aligned_cols=119 Identities=19% Similarity=0.368 Sum_probs=104.8
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 351 (413)
Q Consensus 272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~ 351 (413)
+++++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++..|+......+. .++.+
T Consensus 2 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~--------~~v~~------- 66 (122)
T 3kpb_A 2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNK--------KTIEE------- 66 (122)
T ss_dssp BHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHTTC--------CBGGG-------
T ss_pred chHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHhcc--------cCHHH-------
Confidence 456779999999999999999999999999999999999999999999999998665321 23444
Q ss_pred CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+|.+++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||..||++++.+
T Consensus 67 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~g~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 67 ------IMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVD-DYRRVVGIVTSEDISRLFGG 120 (122)
T ss_dssp ------TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHHC-
T ss_pred ------HhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEEC-CCCCEEEEEeHHHHHHHhhc
Confidence 6667889999999999999999999999999999 58999999999999999864
No 20
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.76 E-value=7.9e-18 Score=146.97 Aligned_cols=119 Identities=18% Similarity=0.329 Sum_probs=105.6
Q ss_pred cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103 272 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 348 (413)
Q Consensus 272 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~ 348 (413)
+++++|. ++++++.+++++.+|+++|.+++++++||+|++ |+++|++|.+|++.....+. +.++.+
T Consensus 43 ~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~---- 111 (172)
T 3lhh_A 43 TISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGE-------RLELVD---- 111 (172)
T ss_dssp CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTC-------CCCGGG----
T ss_pred CHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcC-------cccHHH----
Confidence 5777898 778999999999999999999999999999987 99999999999998665321 234444
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+| ++++++.+++++.+|++.|.+++.+++||+| ++|+++|+||+.||++++++
T Consensus 112 ---------im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~g~lvGiit~~Dil~~l~~ 164 (172)
T 3lhh_A 112 ---------LV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVD-EYGDLKGLVTLQDMMDALTG 164 (172)
T ss_dssp ---------GC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHT
T ss_pred ---------Hh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEe-CCCCEEEEeeHHHHHHHHhC
Confidence 77 7899999999999999999999999999999 58999999999999999875
No 21
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.75 E-value=7.4e-18 Score=141.85 Aligned_cols=123 Identities=17% Similarity=0.212 Sum_probs=104.8
Q ss_pred ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCC--cEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHH
Q 015103 269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND--SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL 346 (413)
Q Consensus 269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g--~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l 346 (413)
+..+++++|.+++.++.+++++.+|++.|.+++++++||+|++| +++|++|.+|++.....+... +.++.+
T Consensus 3 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~~-----~~~v~~-- 75 (141)
T 2rih_A 3 MAIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDL-----DGPAMP-- 75 (141)
T ss_dssp --CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCT-----TSBSGG--
T ss_pred cceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCCCC-----CCCHHH--
Confidence 34567888999999999999999999999999999999999888 999999999999865432110 233433
Q ss_pred hcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 347 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 347 ~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
+|.+++.++.++ ++.+|++.|.+++.+++||+| ++|+++|+||.+||++++.
T Consensus 76 -----------~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~~ 127 (141)
T 2rih_A 76 -----------IANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVN-KNGELVGVLSIRDLCFERA 127 (141)
T ss_dssp -----------GCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHSCHH
T ss_pred -----------HcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEc-CCCcEEEEEEHHHHHHHHH
Confidence 677789999999 999999999999999999999 5899999999999987654
No 22
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.74 E-value=4e-18 Score=141.46 Aligned_cols=118 Identities=14% Similarity=0.325 Sum_probs=101.1
Q ss_pred cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103 272 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 348 (413)
Q Consensus 272 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~ 348 (413)
+++++|. ++++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|+++....+ +.++.+
T Consensus 6 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~--------~~~v~~---- 73 (129)
T 3jtf_A 6 TVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEP--------ALDIRS---- 73 (129)
T ss_dssp BHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCT--------TSCGGG----
T ss_pred CHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccC--------CcCHHH----
Confidence 5677787 678899999999999999999999999999975 8999999999998754311 234444
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+|. +++++.+++++.+|++.|.+++.+++||+| ++|+++|+||++||++++++
T Consensus 74 ---------~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd-~~g~~~Giit~~Dil~~l~g 126 (129)
T 3jtf_A 74 ---------LVR-PAVFIPEVKRLNVLLREFRASRNHLAIVID-EHGGISGLVTMEDVLEQIVG 126 (129)
T ss_dssp ---------GCB-CCCEEETTCBHHHHHHHHHTSSCCEEEEEC-C-CCEEEEEEHHHHHHHHHH
T ss_pred ---------HhC-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence 553 478999999999999999999999999999 58999999999999999976
No 23
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.74 E-value=1.8e-17 Score=136.14 Aligned_cols=121 Identities=19% Similarity=0.243 Sum_probs=104.6
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 351 (413)
Q Consensus 272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~ 351 (413)
+++++|.+++.++.+++++.+|++.|.+++.+.+||+| +|+++|+++.+|+++....+.. ..+.++.+
T Consensus 2 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~~~----~~~~~v~~------- 69 (125)
T 1pbj_A 2 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDD----LAEVKVWE------- 69 (125)
T ss_dssp CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCC----TTTSBHHH-------
T ss_pred CHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcCCc----ccccCHHH-------
Confidence 35667888999999999999999999999999999999 8999999999999886543211 12356666
Q ss_pred CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+|.+++.++.+++++.++++.|.+++.+++||+| + |+++|+||.+||++++.+
T Consensus 70 ------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~-~~~~Gvit~~dl~~~l~~ 122 (125)
T 1pbj_A 70 ------VMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-D-DEIIGVISATDILRAKMA 122 (125)
T ss_dssp ------HCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHC-
T ss_pred ------HcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEE-C-CEEEEEEEHHHHHHHHHh
Confidence 5666899999999999999999999999999999 5 999999999999998864
No 24
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.74 E-value=7e-18 Score=144.26 Aligned_cols=119 Identities=18% Similarity=0.289 Sum_probs=104.0
Q ss_pred cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEE-cC-CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHh
Q 015103 272 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIV-DD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQ 347 (413)
Q Consensus 272 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv-d~-~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~ 347 (413)
+++++|.+ +++++.+++++.+|++.|.+++++++||+ |+ +|+++|++|.+|++.....+. +.++.+
T Consensus 21 ~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~--- 90 (153)
T 3oco_A 21 VASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD-------KAKIST--- 90 (153)
T ss_dssp BHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT-------TSBGGG---
T ss_pred EeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC-------CCcHHH---
Confidence 56677875 78999999999999999999999999999 65 489999999999998654321 234444
Q ss_pred cCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 348 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 348 ~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+| ++++++.+++++.+|++.|.+++.+++||+| ++|+++|+||+.||++++++
T Consensus 91 ----------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~~g~~vGivt~~dil~~l~~ 143 (153)
T 3oco_A 91 ----------IM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVID-EYGGTSGIITDKDVYEELFG 143 (153)
T ss_dssp ----------TC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEEC-TTSCEEEEECHHHHHHHHHC
T ss_pred ----------Hh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEe-CCCCEEEEeeHHHHHHHHhc
Confidence 67 7899999999999999999999999999999 58999999999999999875
No 25
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.74 E-value=2.5e-18 Score=144.07 Aligned_cols=121 Identities=13% Similarity=0.275 Sum_probs=101.3
Q ss_pred cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103 272 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 348 (413)
Q Consensus 272 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~ 348 (413)
+++++|. +++.++.+++++.+|+++|.+++++++||+|++ |+++|++|.+|+++....+... +.++.+
T Consensus 4 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~-----~~~v~~---- 74 (136)
T 3lfr_A 4 QVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGD-----SDDVKK---- 74 (136)
T ss_dssp BHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGG-----GCCGGG----
T ss_pred ChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCC-----CcCHHH----
Confidence 4667787 568899999999999999999999999999987 8999999999998855421111 234444
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+|. +++++.+++++.+|++.|.+++++++||+| ++|+++|+||++||++++++
T Consensus 75 ---------~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~lvGiit~~Dil~~l~~ 127 (136)
T 3lfr_A 75 ---------LLR-PATFVPESKRLNVLLREFRANHNHMAIVID-EYGGVAGLVTIEDVLEQIVG 127 (136)
T ss_dssp ---------TCB-CCCEEETTCBHHHHHHHHHHHTCCEEEEEC-TTSCEEEEEEHHHHHTTC--
T ss_pred ---------HcC-CCeEECCCCcHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence 664 488999999999999999999999999999 58999999999999998875
No 26
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.74 E-value=2.8e-17 Score=137.57 Aligned_cols=122 Identities=19% Similarity=0.355 Sum_probs=105.3
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHH-HHHHhhhhhhhcccCcccHHHHHhcCC
Q 015103 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI-TALAKDKAYAQIHLDEMNIHQALQLGQ 350 (413)
Q Consensus 272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl-~~~~~~~~~~~~~l~~~~v~~~l~~~~ 350 (413)
+++++|.+++.++.+++++.+|++.|.+++.+++||+|++|+++|+++.+|+ ......+.. .+.++.+
T Consensus 9 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~-----~~~~v~~------ 77 (138)
T 2p9m_A 9 KVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYT-----LETTIGD------ 77 (138)
T ss_dssp BGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTCCC-----SSCBHHH------
T ss_pred CHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhccc-----CCcCHHH------
Confidence 5667798899999999999999999999999999999988999999999999 775543211 1346666
Q ss_pred CCCCCcccCCCcceEEeCCCCHHHHHHHHhcCC-----CCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 351 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPG-----VRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 351 ~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~-----~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+|.+++.++.+++++.+|++.|.+++ .+++||+| ++|+++|+||..||++++..
T Consensus 78 -------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~~~ 136 (138)
T 2p9m_A 78 -------VMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVD-KNNKLVGIISDGDIIRTISK 136 (138)
T ss_dssp -------HSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred -------HhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEEC-CCCeEEEEEEHHHHHHHHHh
Confidence 66678899999999999999999999 99999999 58999999999999998754
No 27
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.73 E-value=3.2e-17 Score=141.27 Aligned_cols=125 Identities=22% Similarity=0.228 Sum_probs=104.8
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhh----cccCcccHHHHHh
Q 015103 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ----IHLDEMNIHQALQ 347 (413)
Q Consensus 272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~----~~l~~~~v~~~l~ 347 (413)
+++++|.++++++.+++++.+|+++|.+++++.+||+|++|+++|++|..|++.......... ....+.++.+
T Consensus 6 ~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~~--- 82 (160)
T 2o16_A 6 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE--- 82 (160)
T ss_dssp BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHH---
T ss_pred cHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHHH---
Confidence 567789888999999999999999999999999999998899999999999988654211100 0011234444
Q ss_pred cCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 348 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 348 ~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
+|.++++++.+++++.+|++.|.+++++++||+| + |+++|+||+.||++++.
T Consensus 83 ----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-g~lvGiit~~dil~~~~ 134 (160)
T 2o16_A 83 ----------VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-K-DVLVGIITDSDFVTIAI 134 (160)
T ss_dssp ----------HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-T-TEEEEEECHHHHHHHHH
T ss_pred ----------HhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEE-C-CEEEEEEEHHHHHHHHH
Confidence 6777899999999999999999999999999999 5 99999999999999875
No 28
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.73 E-value=1.5e-17 Score=141.30 Aligned_cols=127 Identities=22% Similarity=0.350 Sum_probs=103.5
Q ss_pred cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhh---------cccCcc
Q 015103 272 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ---------IHLDEM 340 (413)
Q Consensus 272 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~---------~~l~~~ 340 (413)
+++++|.+ +++++.+++++.+|++.|.+++++++||+|++|+++|++|..|++.+........ ....+.
T Consensus 6 ~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (152)
T 4gqw_A 6 TVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTNGK 85 (152)
T ss_dssp BGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC-----CC
T ss_pred EhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHhccc
Confidence 56777877 7999999999999999999999999999998899999999999986432110000 000122
Q ss_pred cHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 341 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 341 ~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
++.+ +|.++++++.+++++.+|++.|.+++.+++||+| ++|+++|+||.+||++++..
T Consensus 86 ~v~~-------------~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dil~~~~~ 143 (152)
T 4gqw_A 86 LVGD-------------LMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVD-SDGKLVGIITRGNVVRAALQ 143 (152)
T ss_dssp BHHH-------------HSEESCCCEESSSBHHHHHHHHHHSSCCEEEEEC-TTSBEEEEEEHHHHHHHHHC
T ss_pred cHHH-------------hcCCCceEECCCCcHHHHHHHHHHCCCCEEEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence 3443 6777788999999999999999999999999999 58999999999999999864
No 29
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.73 E-value=6.1e-18 Score=140.01 Aligned_cols=121 Identities=13% Similarity=0.166 Sum_probs=104.4
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 351 (413)
Q Consensus 272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~ 351 (413)
+++++|.+++.++.+++++.+|++.|.+++.+++||+|+ |+++|++|.+|+.+....+... +.++++
T Consensus 6 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~~~~-----~~~v~~------- 72 (128)
T 3gby_A 6 TFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWPTV-----KEKLGE------- 72 (128)
T ss_dssp BGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSSCCT-----TCBCCG-------
T ss_pred EHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhCCcc-----cCcHHH-------
Confidence 567789999999999999999999999999999999998 9999999999998754322110 122333
Q ss_pred CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+|.+++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||..||++++..
T Consensus 73 ------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd-~~g~~~Giit~~dll~~l~~ 126 (128)
T 3gby_A 73 ------ELLETVRSYRPGEQLFDNLISVAAAKCSVVPLAD-EDGRYEGVVSRKRILGFLAE 126 (128)
T ss_dssp ------GGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEEC-TTCBEEEEEEHHHHHHHHHT
T ss_pred ------HccCCCcEECCCCCHHHHHHHHHhCCCcEEEEEC-CCCCEEEEEEHHHHHHHHHh
Confidence 6777889999999999999999999999999999 58999999999999999854
No 30
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.73 E-value=3.4e-17 Score=137.10 Aligned_cols=121 Identities=18% Similarity=0.355 Sum_probs=104.1
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH-HHhhhhhhhcccCcccHHHHHhcCC
Q 015103 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQALQLGQ 350 (413)
Q Consensus 272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~-~~~~~~~~~~~l~~~~v~~~l~~~~ 350 (413)
+++++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++ +...+.. .+.++.+
T Consensus 8 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~-----~~~~v~~------ 76 (138)
T 2yzi_A 8 PIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLP-----YDIPVER------ 76 (138)
T ss_dssp BGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCC-----TTSBGGG------
T ss_pred hHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCCc-----ccCCHHH------
Confidence 567779889999999999999999999999999999998899999999999974 3332211 1234444
Q ss_pred CCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 351 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 351 ~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+|.+++.++.+++++.+|++.|.+++++++ |+| ++|+++|+||..||++++..
T Consensus 77 -------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd-~~g~~~Giit~~dil~~~~~ 129 (138)
T 2yzi_A 77 -------IMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIE-EEGKIVGIFTLSDLLEASRR 129 (138)
T ss_dssp -------TCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEE-ETTEEEEEEEHHHHHHHHHC
T ss_pred -------HhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EEC-CCCCEEEEEEHHHHHHHHHH
Confidence 677789999999999999999999999999 999 58999999999999998864
No 31
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.73 E-value=2.6e-17 Score=136.93 Aligned_cols=120 Identities=18% Similarity=0.266 Sum_probs=104.3
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 351 (413)
Q Consensus 272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~ 351 (413)
+++++|.+++.++.+++++.+|++.|.+++.+++||+| +|+++|+++.+|++.....+... +.++.+
T Consensus 5 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~-----~~~v~~------- 71 (133)
T 2ef7_A 5 IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKSL-----ETKAEE------- 71 (133)
T ss_dssp BGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCT-----TCBGGG-------
T ss_pred cHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcCCCc-----ccCHHH-------
Confidence 56777988999999999999999999999999999999 89999999999998866533111 234444
Q ss_pred CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
+|.+++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||..||++++.
T Consensus 72 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~~ 124 (133)
T 2ef7_A 72 ------FMTASLITIREDSPITGALALMRQFNIRHLPVVD-DKGNLKGIISIRDITRAID 124 (133)
T ss_dssp ------TSEECCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHH
T ss_pred ------HcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHHHHHHH
Confidence 6667889999999999999999999999999999 5899999999999999875
No 32
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.73 E-value=1.3e-17 Score=142.93 Aligned_cols=124 Identities=18% Similarity=0.259 Sum_probs=102.1
Q ss_pred cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcC
Q 015103 272 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG 349 (413)
Q Consensus 272 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~ 349 (413)
+++++|. +++.++.+++++.+|+++|.+++++++||+|++|+++|++|.+|++.....+......+.+.++.+
T Consensus 16 ~v~dim~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~v~~----- 90 (156)
T 3ctu_A 16 QEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVH----- 90 (156)
T ss_dssp TGGGGEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGG-----
T ss_pred HHHHHcCcccCceEECCCCCHHHHHHHHHHCCCceEeEECCCCEEEEEEcHHHHHHHHHhccccccccccCcHHH-----
Confidence 4566687 678999999999999999999999999999989999999999999986654322111111234443
Q ss_pred CCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 350 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 350 ~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
+|.++++++.+++++.+|++.|.+++ ++||+| ++|+++|+||.+||++++.
T Consensus 91 --------~m~~~~~~v~~~~~l~~a~~~~~~~~--~lpVvd-~~g~~~Giit~~dil~~l~ 141 (156)
T 3ctu_A 91 --------MTKTDVAVVSPDFTITEVLHKLVDES--FLPVVD-AEGIFQGIITRKSILKAVN 141 (156)
T ss_dssp --------GCBCSCCCBCSSCCHHHHHHHTTTSS--EEEEEC-TTSBEEEEEETTHHHHHHH
T ss_pred --------hccCCceeeCCCCcHHHHHHHHHHcC--eEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence 67778899999999999999999987 699999 5899999999999999875
No 33
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.73 E-value=1.9e-17 Score=143.45 Aligned_cols=123 Identities=20% Similarity=0.366 Sum_probs=105.4
Q ss_pred cccccCCC---CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103 272 RIGEANGR---PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 348 (413)
Q Consensus 272 ~v~~~m~~---~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~ 348 (413)
+++++|.+ +++++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++.+..+..... +.++.+
T Consensus 25 ~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~---~~~v~~---- 97 (165)
T 3fhm_A 25 FVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASL---QQSVSV---- 97 (165)
T ss_dssp BHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGGGG---TSBGGG----
T ss_pred CHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCccc---cCCHHH----
Confidence 56777874 78999999999999999999999999999989999999999999986653321111 244544
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+|.+++++|.+++++.+|++.|.+++++++||+| + |+++|+||..||++++..
T Consensus 98 ---------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-g~~~Giit~~dil~~~~~ 150 (165)
T 3fhm_A 98 ---------AMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEE-N-GRLAGIISIGDVVKARIG 150 (165)
T ss_dssp ---------TSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHTTC
T ss_pred ---------HhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHHH
Confidence 6777899999999999999999999999999999 5 999999999999999864
No 34
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.73 E-value=2.5e-17 Score=140.54 Aligned_cols=123 Identities=34% Similarity=0.563 Sum_probs=99.9
Q ss_pred CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 358 (413)
Q Consensus 279 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 358 (413)
+++.++.+++++.+|++.|.+++++.+||+|++|+++|++|..|++.....+.+.. .+.++.+.+... ..
T Consensus 29 ~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~vGivt~~dl~~~~~~~~~~~---~~~~v~~~m~~~-------~~ 98 (152)
T 2uv4_A 29 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNN---LDVSVTKALQHR-------SH 98 (152)
T ss_dssp SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEHHHHHHHHHCSSCCC---TTSBGGGGGGTC-------CH
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCceEeEECCCCcEEEEEeHHHHHHHhcchhhhh---hcchHHHHHhhh-------hc
Confidence 57889999999999999999999999999998899999999999998665332111 123454422110 01
Q ss_pred CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 359 m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
|.+++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||..||++++..
T Consensus 99 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~vGiit~~dil~~l~~ 151 (152)
T 2uv4_A 99 YFEGVLKCYLHETLETIINRLVEAEVHRLVVVD-ENDVVKGIVSLSDILQALVL 151 (152)
T ss_dssp HHHTCSEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHC-
T ss_pred ccCCCeEECCCCcHHHHHHHHHHcCCeEEEEEC-CCCeEEEEEEHHHHHHHHHh
Confidence 225788999999999999999999999999999 58999999999999999864
No 35
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.72 E-value=4.1e-17 Score=137.37 Aligned_cols=126 Identities=25% Similarity=0.475 Sum_probs=101.1
Q ss_pred cCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCC
Q 015103 276 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS 355 (413)
Q Consensus 276 ~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~ 355 (413)
+|.++++++.+++++.+|++.|.+++++++||+|++|+++|+++..|++.....+.+. ..+.++.+++.....
T Consensus 16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~---~~~~~v~~~m~~~~~---- 88 (144)
T 2nyc_A 16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYN---DLSLSVGEALMRRSD---- 88 (144)
T ss_dssp CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC-------CCSBHHHHHHHCC-----
T ss_pred CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccccc---cCCccHHHHHhcCcc----
Confidence 4677899999999999999999999999999999889999999999999866543211 114577775432100
Q ss_pred cccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 356 LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 356 ~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
-..++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||.+||++++..
T Consensus 89 ---~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~g~~~Giit~~dil~~l~~ 141 (144)
T 2nyc_A 89 ---DFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYILL 141 (144)
T ss_dssp --------CEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred ---ccCCCeEECCCCcHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEEHHHHHHHHHh
Confidence 001578999999999999999999999999999 58999999999999999864
No 36
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.72 E-value=1.3e-17 Score=138.84 Aligned_cols=122 Identities=16% Similarity=0.257 Sum_probs=104.0
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH-HHhhhhhhhcccCcccHHHHHhcCC
Q 015103 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQALQLGQ 350 (413)
Q Consensus 272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~-~~~~~~~~~~~l~~~~v~~~l~~~~ 350 (413)
+++++|.+++.++.+++++.+|++.|.+++.+++||+|++|+++|++|..|++. +...+.. ..+.++.+
T Consensus 9 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~----~~~~~v~~------ 78 (133)
T 1y5h_A 9 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLD----PNTATAGE------ 78 (133)
T ss_dssp CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCC----TTTSBHHH------
T ss_pred CHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCC----ccccCHHH------
Confidence 566778888999999999999999999999999999988899999999999984 4432211 11356666
Q ss_pred CCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 351 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 351 ~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+|.+++.++++++++.+|++.|.+++.+++||+| + |+++|+||.+||++++.+
T Consensus 79 -------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~-g~~~Giit~~dil~~l~~ 131 (133)
T 1y5h_A 79 -------LARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-E-HRLVGIVTEADIARHLPE 131 (133)
T ss_dssp -------HHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHTCC-
T ss_pred -------HhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHHh
Confidence 5556788999999999999999999999999999 4 899999999999998764
No 37
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.72 E-value=4.2e-17 Score=140.32 Aligned_cols=122 Identities=17% Similarity=0.359 Sum_probs=103.2
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 351 (413)
Q Consensus 272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~ 351 (413)
+++++|.++ +++.+++++.+|++.|.+++++++||+|++|+++|++|..|++.....+.. ..+.++.+
T Consensus 18 ~v~~im~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~v~~------- 85 (159)
T 3fv6_A 18 QVKDFQSIP-VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQE----LTSVPVHI------- 85 (159)
T ss_dssp BGGGSCBCC-CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCSC----TTTCBGGG-------
T ss_pred CHHHHcCCC-EEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccCc----ccCcCHHH-------
Confidence 566778875 599999999999999999999999999989999999999999986532211 11334544
Q ss_pred CCCCcccCCC--cceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCC---eEEEEEehHHHHHHhhc
Q 015103 352 ANPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK---RVEGIISLSDVFRFLLG 412 (413)
Q Consensus 352 ~~~~~~~m~~--~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~---~liGvIS~~DIl~~l~~ 412 (413)
+|.+ ++.++.+++++.+|++.|.+++++++||+| ++| +++|+||+.||++++..
T Consensus 86 ------~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~~~~vGiit~~dil~~l~~ 144 (159)
T 3fv6_A 86 ------IMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIK-DTDKGFEVIGRVTKTNMTKILVS 144 (159)
T ss_dssp ------TSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-ECSSSEEEEEEEEHHHHHHHHHH
T ss_pred ------HHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEe-CCCcceeEEEEEEHHHHHHHHHH
Confidence 6666 788999999999999999999999999999 477 99999999999999853
No 38
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.72 E-value=3.5e-17 Score=139.18 Aligned_cols=119 Identities=12% Similarity=0.242 Sum_probs=103.9
Q ss_pred cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcC
Q 015103 272 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG 349 (413)
Q Consensus 272 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~ 349 (413)
+++++|.+ +++++.+++++.+|++.|.+++++.+||+|++|+++|++|..|+++....+.. +.+.++.+
T Consensus 29 ~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~v~~----- 99 (149)
T 3k2v_A 29 RVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGVD----MRDASIAD----- 99 (149)
T ss_dssp BGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSSC----CTTCBHHH-----
T ss_pred CHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCCC----cccCcHHH-----
Confidence 67788998 89999999999999999999999999999989999999999999987653221 12456776
Q ss_pred CCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 350 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 350 ~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
+|.+++.++.+++++.+|++.|.+++++++||+|+ + +++|+||..||+++
T Consensus 100 --------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~-~~~Giit~~dil~a 149 (149)
T 3k2v_A 100 --------VMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADG-D-HLLGVVHMHDLLRA 149 (149)
T ss_dssp --------HSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHTCC
T ss_pred --------HcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecC-C-EEEEEEEHHHhhcC
Confidence 56667899999999999999999999999999993 4 99999999999853
No 39
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.72 E-value=2.4e-17 Score=140.13 Aligned_cols=125 Identities=21% Similarity=0.222 Sum_probs=102.9
Q ss_pred cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhh-cccCcccHHHHHhc
Q 015103 272 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ-IHLDEMNIHQALQL 348 (413)
Q Consensus 272 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~-~~l~~~~v~~~l~~ 348 (413)
+++++|. .+++++.+++++.+|++.|.+++++++||+|++|+++|++|..|++.......... ......++.+
T Consensus 16 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~---- 91 (150)
T 3lqn_A 16 FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVEQ---- 91 (150)
T ss_dssp BHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGGG----
T ss_pred ChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHHH----
Confidence 5667787 45899999999999999999999999999999999999999999998664221100 0011233433
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+|.+++.++.+++++.+|++.|.++++ +|||| ++|+++|+||.+||++++..
T Consensus 92 ---------~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd-~~g~~~Giit~~dil~~l~~ 143 (150)
T 3lqn_A 92 ---------VMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVN-EDGYFEGILTRRAILKLLNK 143 (150)
T ss_dssp ---------TCBSSCCEEETTCBHHHHHHHHHHCSE--EEEEC-TTCBEEEEEEHHHHHHHHHH
T ss_pred ---------HhcCCCceeCCCCCHHHHHHHHHhCCE--EEEEC-CCCcEEEEEEHHHHHHHHHH
Confidence 777789999999999999999999987 99999 58999999999999998853
No 40
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.71 E-value=8.9e-17 Score=138.46 Aligned_cols=132 Identities=14% Similarity=0.232 Sum_probs=104.1
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcC
Q 015103 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG 349 (413)
Q Consensus 272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~ 349 (413)
+++++|.++++++.+++++.+|++.|.+++++++||+|+ +|+++|++|..|+......+..........++.+.+...
T Consensus 14 ~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~v~~~m~~~ 93 (164)
T 2pfi_A 14 RVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQDILARG 93 (164)
T ss_dssp BHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCBHHHHHHTT
T ss_pred CHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccchhhhhhccc
Confidence 567789999999999999999999999999999999996 799999999999998664322111111234666655421
Q ss_pred CCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 350 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 350 ~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
. + ....+.++.+++++.+|++.|.+++.+++||+| +|+++|+||++||++++.+
T Consensus 94 ~----~---~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~l~Giit~~dil~~~~~ 147 (164)
T 2pfi_A 94 C----P---TEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS--RGRAVGCVSWVEMKKAISN 147 (164)
T ss_dssp C----C---CBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHHHHHHH
T ss_pred c----c---ccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE--CCEEEEEEEHHHHHHHHHh
Confidence 1 0 001167899999999999999999999999999 4899999999999998753
No 41
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.71 E-value=6.7e-17 Score=142.56 Aligned_cols=124 Identities=19% Similarity=0.279 Sum_probs=105.6
Q ss_pred ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCC
Q 015103 271 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ 350 (413)
Q Consensus 271 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~ 350 (413)
.+++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|++.......... ...++.+
T Consensus 9 ~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~~---~~~~v~~------ 79 (184)
T 1pvm_A 9 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKP---DEVPIRL------ 79 (184)
T ss_dssp CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCG---GGSBGGG------
T ss_pred cCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccCc---ccCCHHH------
Confidence 4677789999999999999999999999999999999998899999999999988654211000 1234444
Q ss_pred CCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 351 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 351 ~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
+|.+++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||+.||++++.
T Consensus 80 -------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~~Givt~~dll~~~~ 132 (184)
T 1pvm_A 80 -------VMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVD-DPGRVVGIVTLTDLSRYLS 132 (184)
T ss_dssp -------TSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEEC-TTCCEEEEEEHHHHTTTSC
T ss_pred -------HhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence 6777899999999999999999999999999999 5799999999999998764
No 42
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.71 E-value=2.2e-17 Score=144.55 Aligned_cols=138 Identities=22% Similarity=0.372 Sum_probs=103.1
Q ss_pred cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhh--------h--cccCc
Q 015103 272 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA--------Q--IHLDE 339 (413)
Q Consensus 272 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~--------~--~~l~~ 339 (413)
+++++|.+ +++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|++++....... . ..+..
T Consensus 5 ~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (180)
T 3sl7_A 5 TVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKT 84 (180)
T ss_dssp BHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CCCS
T ss_pred eHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchhhh
Confidence 46677887 789999999999999999999999999999999999999999998532100000 0 00000
Q ss_pred c-cHHHHHhcCCCCCCCcc-cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 340 M-NIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 340 ~-~v~~~l~~~~~~~~~~~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
. .....+. .....+++ +|.++++++.+++++.+|++.|.+++++++||+| ++|+++|+||++||++++..
T Consensus 85 ~~~~~~~~~--~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~vGiit~~dil~~~~~ 156 (180)
T 3sl7_A 85 FNELQKLIS--KTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVD-ADGKLIGILTRGNVVRAALQ 156 (180)
T ss_dssp HHHHHHHHH--TTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEEC-TTCBEEEEEEHHHHHHHHHH
T ss_pred hHHHHHHHh--ccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHHHHHHHH
Confidence 0 0000000 01112333 7777889999999999999999999999999999 58999999999999999853
No 43
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.70 E-value=1.1e-16 Score=139.94 Aligned_cols=118 Identities=15% Similarity=0.189 Sum_probs=101.0
Q ss_pred cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103 272 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 348 (413)
Q Consensus 272 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~ 348 (413)
+++++|+ ++++++.+++++.+|+++|.+++++++||+|++ |+++|+++.+|++.....+. ..++.
T Consensus 37 ~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~-------~~~v~----- 104 (173)
T 3ocm_A 37 SIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEG-------RVRRN----- 104 (173)
T ss_dssp CSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-------SCCGG-----
T ss_pred CHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCC-------cchhH-----
Confidence 4666785 468899999999999999999999999999876 89999999999998654321 12222
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
|.++++++.+++++.+|++.|.+++.+.+||+| ++|+++|+||+.||++++++
T Consensus 105 ----------~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvd-e~g~lvGiIT~~Dil~~l~~ 157 (173)
T 3ocm_A 105 ----------RLRDPIIVHESIGILRLMDTLKRSRGQLVLVAD-EFGAIEGLVTPIDVFEAIAG 157 (173)
T ss_dssp ----------GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEEC-TTCCEEEEECHHHHHHHHHC
T ss_pred ----------hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEe-CCCCEEEEEeHHHHHHHHhC
Confidence 234688999999999999999999999999999 58999999999999999875
No 44
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.70 E-value=8.4e-17 Score=134.24 Aligned_cols=121 Identities=12% Similarity=0.244 Sum_probs=102.6
Q ss_pred cccccCC---CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH-HHhhhhhhhcccCcccHHHHHh
Q 015103 272 RIGEANG---RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQALQ 347 (413)
Q Consensus 272 ~v~~~m~---~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~-~~~~~~~~~~~l~~~~v~~~l~ 347 (413)
+++++|. +++.++.+++++.+|++.|.+++.+++||+| +|+++|++|.+|+++ +...+.. ..+.++.+
T Consensus 7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~----~~~~~v~~--- 78 (135)
T 2rc3_A 7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKP----VKDTQVKE--- 78 (135)
T ss_dssp BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSC----GGGSBGGG---
T ss_pred eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCCC----cccCCHHH---
Confidence 4567787 7899999999999999999999999999998 899999999999986 3332210 11234444
Q ss_pred cCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 348 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 348 ~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+|.+++.++.+++++.+|++.|.+++.+++||+| +|+++|+||.+||++++.+
T Consensus 79 ----------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dll~~~~~ 131 (135)
T 2rc3_A 79 ----------IMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD--DGKVIGLLSIGDLVKDAIS 131 (135)
T ss_dssp ----------TSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred ----------hccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe--CCEEEEEEEHHHHHHHHHh
Confidence 6777899999999999999999999999999999 4899999999999998864
No 45
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.70 E-value=1.8e-16 Score=146.34 Aligned_cols=200 Identities=12% Similarity=0.094 Sum_probs=128.6
Q ss_pred CCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCC-----CCCc---
Q 015103 183 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS-----SSSL--- 254 (413)
Q Consensus 183 ~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~-----~~~~--- 254 (413)
+.++|.++++++.+++++.+|+++|.+++++++||+|+ +| +++|++|..|+++++....... ....
T Consensus 9 v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---~~---~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v 82 (245)
T 3l2b_A 9 VEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG---NN---HLLGMLSTSNITATYMDIWDSNILAKSATSLDNI 82 (245)
T ss_dssp GGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHH
T ss_pred HHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHH
Confidence 34588999999999999999999999999999999975 46 8999999999999875432110 0000
Q ss_pred ------cc------ccccccccccccc-cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCC---------
Q 015103 255 ------PI------LQQPVSSIQLGTW-VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND--------- 312 (413)
Q Consensus 255 ------~~------~~~~i~~l~i~~~-~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g--------- 312 (413)
.. .....+.+.++.. ...+.+.+....+.+-.+ -.+++..+.+.+++++++++...
T Consensus 83 ~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgd--r~~~~~~~i~~~~~~liit~~~~~~~~v~~~a 160 (245)
T 3l2b_A 83 LDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGD--RAEIQAELIELKVSLLIVTGGHTPSKEIIELA 160 (245)
T ss_dssp HHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECS--CHHHHHHHHHTTCSEEEECTTCCCCHHHHHHH
T ss_pred HHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECC--CHHHHHHHHHcCCCEEEECCCCCCCHHHHHHH
Confidence 00 0000011111111 112223344444444433 47888999999999998886321
Q ss_pred ---cEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccCC-CcceEEeCCCCHHHHHHHHhcCCCCEEE
Q 015103 313 ---SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLV 388 (413)
Q Consensus 313 ---~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~-~~~~~v~~~~sl~~~~~~m~~~~~~~l~ 388 (413)
.+-.+.+..|.......- ....++++ +|+ +++.++++++++.+|++.|.+++++++|
T Consensus 161 ~~~~~~~i~t~~d~~~~~~~~------~~~~~v~~-------------im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~p 221 (245)
T 3l2b_A 161 KKNNITVITTPHDSFTASRLI------VQSLPVDY-------------VMTKDNLVAVSTDDLVEDVKVTMSETRYSNYP 221 (245)
T ss_dssp HHHTCEEEECSSCHHHHHHHG------GGGSBHHH-------------HSBCTTCCCEETTSBHHHHHHHHHHHCCSEEE
T ss_pred HHcCCeEEEeCCChHHHHHHH------hcCCceee-------------EecCCccEEECCCCcHHHHHHHHHhcCCceEE
Confidence 122233333322211100 00223444 787 7899999999999999999999999999
Q ss_pred EEeCCCCeEEEEEehHHHHHHh
Q 015103 389 IVEAGSKRVEGIISLSDVFRFL 410 (413)
Q Consensus 389 VVd~~~~~liGvIS~~DIl~~l 410 (413)
|+| ++|+++|+||++|++++.
T Consensus 222 Vvd-~~~~~~Giit~~dll~~~ 242 (245)
T 3l2b_A 222 VID-ENNKVVGSIARFHLISTH 242 (245)
T ss_dssp EEC-TTCBEEEEEECC------
T ss_pred EEc-CCCeEEEEEEHHHhhchh
Confidence 999 589999999999999864
No 46
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.70 E-value=1.1e-16 Score=136.95 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=102.6
Q ss_pred cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhh-hhhcccCcccHHHHHhc
Q 015103 272 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA-YAQIHLDEMNIHQALQL 348 (413)
Q Consensus 272 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~-~~~~~l~~~~v~~~l~~ 348 (413)
+++++|.+ +++++.+++++.+|++.|.+++++++||+|++|+++|++|..|++.....+. +....+...++.+
T Consensus 12 ~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~---- 87 (157)
T 2emq_A 12 TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKVEE---- 87 (157)
T ss_dssp BSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSSBCGGGGGTCBGGG----
T ss_pred cHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccccchHHhcCCcHHH----
Confidence 46667876 7889999999999999999999999999998899999999999998654321 1000011233333
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+|.+++.++.+++++.+|++.|.++++ +||+| ++|+++|+||.+||++++..
T Consensus 88 ---------~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd-~~g~~~Giit~~dil~~~~~ 139 (157)
T 2emq_A 88 ---------VMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEN-DDGYFAGIFTRREVLKQLNK 139 (157)
T ss_dssp ---------TCBCCCCEEETTSBHHHHHHHHHHSSE--EEEEC-SSSSEEEEEEHHHHHHHHHH
T ss_pred ---------HhCCCCceecCCCcHHHHHHHHhhCCE--EEEEc-CCCeEEEEEEHHHHHHHHHH
Confidence 777789999999999999999999987 99999 58999999999999998753
No 47
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.70 E-value=1.6e-16 Score=136.30 Aligned_cols=125 Identities=9% Similarity=0.142 Sum_probs=104.1
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCE-EEEEcCCCcEEEEEeHHHHHHHHhhhh---hhh--------cccCc
Q 015103 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSS-IPIVDDNDSLLDIYSRSDITALAKDKA---YAQ--------IHLDE 339 (413)
Q Consensus 272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~-lpVvd~~g~lvGiit~~dl~~~~~~~~---~~~--------~~l~~ 339 (413)
+++++|.++++++.+++++.+|++.|.+++++. +||+|++ +++|++|..|++....... ... ....+
T Consensus 17 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (157)
T 1o50_A 17 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIA 95 (157)
T ss_dssp HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCSS
T ss_pred cHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHHHHcC
Confidence 677889999999999999999999999999999 9999977 9999999999988543110 000 00112
Q ss_pred ccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 340 MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 340 ~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
.++.+ +|.+ ++++++++++.+|++.|.+++++++||+| ++|+++|+||+.||++++..
T Consensus 96 ~~v~~-------------im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~vGiit~~dll~~l~~ 153 (157)
T 1o50_A 96 KNASE-------------IMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVD-EKGEIVGDLNSLEILLALWK 153 (157)
T ss_dssp CBHHH-------------HCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHH
T ss_pred CcHHH-------------HcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEc-CCCEEEEEEEHHHHHHHHHH
Confidence 33444 7777 88999999999999999999999999999 58999999999999998853
No 48
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.69 E-value=1e-16 Score=137.71 Aligned_cols=124 Identities=19% Similarity=0.217 Sum_probs=103.5
Q ss_pred cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhh-hhhcccCcccHHHHHhc
Q 015103 272 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA-YAQIHLDEMNIHQALQL 348 (413)
Q Consensus 272 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~-~~~~~l~~~~v~~~l~~ 348 (413)
+++++|.+ +++++.+++++.+|++.|.+++++++||+|++|+++|++|..|++....... +........++.+
T Consensus 15 ~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~~---- 90 (159)
T 1yav_A 15 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE---- 90 (159)
T ss_dssp BHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH----
T ss_pred hHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCHHH----
Confidence 56667877 8899999999999999999999999999998899999999999998664321 1001112345665
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
+|.+++.++.+++++.+|++.|.++++ +||+| ++|+++|+||++||++++.
T Consensus 91 ---------~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd-~~g~~vGiit~~dil~~~~ 141 (159)
T 1yav_A 91 ---------VMLTDIPRLHINDPIMKGFGMVINNGF--VCVEN-DEQVFEGIFTRRVVLKELN 141 (159)
T ss_dssp ---------HSBCSCCEEETTSBHHHHHHHTTTCSE--EEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred ---------hcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEe-CCCeEEEEEEHHHHHHHHH
Confidence 666788999999999999999999987 99999 5899999999999999875
No 49
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.69 E-value=2.1e-17 Score=143.92 Aligned_cols=155 Identities=17% Similarity=0.234 Sum_probs=113.1
Q ss_pred HHHHHHHHHhhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCC
Q 015103 73 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS 152 (413)
Q Consensus 73 ~~~~~~~~fl~~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~ 152 (413)
..++.+...|++.++.|+|. .++++++.+.|+.+|++.|.++++.++||+|.+ ++++|++|..|++..+.....
T Consensus 6 ~~~~~~~~~l~~~~V~diM~--~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dll~~~~~~~~--- 79 (170)
T 4esy_A 6 ARRRAIARAIRQVPIRDILT--SPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN-GHLVGIITESDFLRGSIPFWI--- 79 (170)
T ss_dssp HHHHHHHHHHHTSBGGGGCC--SCCCCEETTSBHHHHHHHHHHTTCSEEEEECTT-SCEEEEEEGGGGGGGTCCTTH---
T ss_pred HHHHHHHHHHcCCCHHHhcC--CCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC-ccEEEEEEHHHHHHHHhhccc---
Confidence 44677888899999999994 569999999999999999999999999999976 569999999999853321000
Q ss_pred CCCHHHHhh-ccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceE
Q 015103 153 NLTEEELET-HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEIL 231 (413)
Q Consensus 153 ~l~~~~l~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~ 231 (413)
....+.+.. ............ .....++.+|.++++++.+++++.+|+++|.+++++++||+|+ | +++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~----g---~lv 148 (170)
T 4esy_A 80 YEASEILSRAIPAPEVEHLFET----GRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQD----G---VPV 148 (170)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHH----HTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEET----T---EEE
T ss_pred cchhhhhhhccchhhHHhhhcc----ccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEEC----C---EEE
Confidence 000000000 001111111110 0111223478999999999999999999999999999999963 5 899
Q ss_pred EEeehhhHHHHHH
Q 015103 232 YLASLSDILKCIC 244 (413)
Q Consensus 232 Givt~~dIl~~l~ 244 (413)
|++|.+||++++.
T Consensus 149 Givt~~Dil~~l~ 161 (170)
T 4esy_A 149 GIVTRRDLLKLLL 161 (170)
T ss_dssp EEEEHHHHTTTSC
T ss_pred EEEEHHHHHHHHH
Confidence 9999999998653
No 50
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.69 E-value=1.1e-16 Score=137.08 Aligned_cols=125 Identities=13% Similarity=0.252 Sum_probs=104.5
Q ss_pred ccccccccCC------CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccH
Q 015103 269 WVPRIGEANG------RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNI 342 (413)
Q Consensus 269 ~~~~v~~~m~------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v 342 (413)
+..+++++|. +++.++.+++++.+|++.|.+++++++||++ +|+++|++|..|+++.+...... ..+.++
T Consensus 5 ~~~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~---~~~~~v 80 (157)
T 4fry_A 5 MSTTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQERS---SKATRV 80 (157)
T ss_dssp --CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTCC---SSSCBH
T ss_pred HHHHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccCC---ccccCH
Confidence 3446777786 5679999999999999999999999999965 89999999999999865432211 114567
Q ss_pred HHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 343 HQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 343 ~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
.+ +|.+++.++.+++++.+|++.|.+++++++||+| +|+++|+||++||++++..
T Consensus 81 ~~-------------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dil~~l~~ 135 (157)
T 4fry_A 81 EE-------------IMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD--GGKLIGLISIGDLVKSVIA 135 (157)
T ss_dssp HH-------------HSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHT
T ss_pred HH-------------HcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence 66 6666788999999999999999999999999999 4999999999999999864
No 51
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.69 E-value=2.1e-16 Score=142.02 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=103.0
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhC---CCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103 272 RIGEANGRPFAMLRPTASLGSALALLVQA---DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 348 (413)
Q Consensus 272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~---~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~ 348 (413)
+++++|+++++++.+++++.+|++.|.++ +++.+||+|++|+++|++|.+|++... .+.++++
T Consensus 55 ~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~----------~~~~v~~---- 120 (205)
T 3kxr_A 55 EIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHE----------PHEPLIS---- 120 (205)
T ss_dssp CGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTSC----------TTSBGGG----
T ss_pred hHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhCC----------CcchHHH----
Confidence 57788999999999999999999999987 899999999999999999999986421 0234444
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
+|.++++++++++++.+|++.|.+++++.+|||| ++|+++|+||..||++.+.
T Consensus 121 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD-~~g~lvGiIT~~Dil~~i~ 173 (205)
T 3kxr_A 121 ---------LLSEDSRALTANTTLLDAAEAIEHSREIELPVID-DAGELIGRVTLRAATALVR 173 (205)
T ss_dssp ---------GCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred ---------HhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence 7878899999999999999999999999999999 5899999999999999874
No 52
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.68 E-value=3.8e-16 Score=140.25 Aligned_cols=121 Identities=15% Similarity=0.118 Sum_probs=106.5
Q ss_pred ccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhC---CccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCc
Q 015103 178 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN---KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL 254 (413)
Q Consensus 178 ~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~---~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~ 254 (413)
+....+|++|.++++++.+++|+.+|++.|.++ +++.+||+|+ .| +++|++|.+|++..
T Consensus 51 ~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~---~~---~lvGivt~~dll~~------------ 112 (205)
T 3kxr_A 51 YSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDE---AD---KYLGTVRRYDIFKH------------ 112 (205)
T ss_dssp SCTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECT---TC---BEEEEEEHHHHTTS------------
T ss_pred CCcchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcC---CC---eEEEEEEHHHHHhC------------
Confidence 677888999999999999999999999999987 8999999975 45 89999999998641
Q ss_pred ccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103 255 PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 329 (413)
Q Consensus 255 ~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~ 329 (413)
... ..++++|.++++++.+++++.+|++.|.++++..+||||++|+++|+||..|++..+..
T Consensus 113 -~~~------------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~ 174 (205)
T 3kxr_A 113 -EPH------------EPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVRE 174 (205)
T ss_dssp -CTT------------SBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred -CCc------------chHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence 011 24566698899999999999999999999999999999999999999999999997654
No 53
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.67 E-value=3.4e-16 Score=141.49 Aligned_cols=156 Identities=15% Similarity=0.175 Sum_probs=100.4
Q ss_pred CCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103 184 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 263 (413)
Q Consensus 184 ~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~ 263 (413)
+..|.++++++.+++++.+|+++|.+++++.+||+|+ +| +++|++|.+|+++++ ..
T Consensus 16 ~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~---~l~Givt~~dl~~~~-------------~~----- 71 (213)
T 1vr9_A 16 KKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDR---EG---HFRGVVNKEDLLDLD-------------LD----- 71 (213)
T ss_dssp GGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECT---TS---BEEEEEEGGGGTTSC-------------TT-----
T ss_pred HHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcC---CC---EEEEEEEHHHHHhhc-------------CC-----
Confidence 3468899999999999999999999999999999964 45 899999999987521 11
Q ss_pred cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHH
Q 015103 264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 343 (413)
Q Consensus 264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~ 343 (413)
..++++|.++++++.+++++.+|+++|.+++++.+||+|++|+++|++|.+|++....... ...
T Consensus 72 -------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~~---------~~~ 135 (213)
T 1vr9_A 72 -------SSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL---------AMD 135 (213)
T ss_dssp -------SBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC---------C--
T ss_pred -------CcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHh---------cCC
Confidence 2356668889999999999999999999999999999998899999999999998654211 111
Q ss_pred HHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEe
Q 015103 344 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE 391 (413)
Q Consensus 344 ~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd 391 (413)
+... . + .+.+.....++.+|.+.|.+++++.++|++
T Consensus 136 ~~~~-------~--l---~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~ 171 (213)
T 1vr9_A 136 VPGI-------R--F---SVLLEDKPGELRKVVDALALSNINILSVIT 171 (213)
T ss_dssp ------------------------------------------------
T ss_pred CCcE-------E--E---EEEeCCCCccHHHHHHHHHHCCCcEEEEEE
Confidence 1000 0 0 011113334599999999999999999875
No 54
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.67 E-value=9.2e-17 Score=137.81 Aligned_cols=114 Identities=11% Similarity=0.300 Sum_probs=99.1
Q ss_pred cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103 272 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 348 (413)
Q Consensus 272 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~ 348 (413)
+++++|.+ +++++.+++++.+|++.|.+++++++||+|++ ++++|++|.+|++.....+ .+.++.+
T Consensus 39 ~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~-------~~~~v~~---- 107 (156)
T 3oi8_A 39 EVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP-------EQFHLKS---- 107 (156)
T ss_dssp BGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG-------GGCCHHH----
T ss_pred CHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC-------CcccHHH----
Confidence 57777876 78899999999999999999999999999977 4999999999998854332 1346666
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHH
Q 015103 349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF 407 (413)
Q Consensus 349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl 407 (413)
+|. +++++++++++.+|++.|.+++.+++||+| ++|+++|+||+.||+
T Consensus 108 ---------im~-~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd-~~g~~~Givt~~Dil 155 (156)
T 3oi8_A 108 ---------ILR-PAVFVPEGKSLTALLKEFREQRNHMAIVID-EYGGTSGLVTFEDII 155 (156)
T ss_dssp ---------HCB-CCCEEETTSBHHHHHHHHHHTTCCEEEEEC-TTSSEEEEEEHHHHC
T ss_pred ---------HcC-CCEEECCCCCHHHHHHHHHhcCCeEEEEEC-CCCCEEEEEEHHHhc
Confidence 553 478999999999999999999999999999 589999999999986
No 55
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.67 E-value=1.8e-16 Score=143.26 Aligned_cols=121 Identities=14% Similarity=0.194 Sum_probs=104.6
Q ss_pred ccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHH
Q 015103 267 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL 346 (413)
Q Consensus 267 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l 346 (413)
.+|..+++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+..... +.++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~~----------~~~v~~-- 76 (213)
T 1vr9_A 9 HHHHMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL----------DSSVFN-- 76 (213)
T ss_dssp ----CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT----------TSBSGG--
T ss_pred cccccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhcC----------CCcHHH--
Confidence 35667888889999999999999999999999999999999998899999999999876322 123443
Q ss_pred hcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 347 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 347 ~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
+|.++++++.+++++.+|++.|.+++++++||+| ++|+++|+||.+||++++.
T Consensus 77 -----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGiit~~Dil~~~~ 129 (213)
T 1vr9_A 77 -----------KVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVD-EEMRLKGAVSLHDFLEALI 129 (213)
T ss_dssp -----------GCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred -----------HccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEc-CCCEEEEEEEHHHHHHHHH
Confidence 7777899999999999999999999999999999 5799999999999999874
No 56
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.66 E-value=7.2e-16 Score=130.75 Aligned_cols=118 Identities=14% Similarity=0.128 Sum_probs=101.6
Q ss_pred CCCCCCC--CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccc
Q 015103 183 NGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 260 (413)
Q Consensus 183 ~~~~~~~--~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~ 260 (413)
++++|.+ +++++.+++++.+|++.|.+++++++||+++ +.| +++|++|.+|+++++.... .
T Consensus 25 v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~~----------~-- 87 (148)
T 3lv9_A 25 IREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRK--NKD---DILGFVHIRDLYNQKINEN----------K-- 87 (148)
T ss_dssp GGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESS--STT---SEEEEEEHHHHHHHHHHHS----------C--
T ss_pred HHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHhcCC----------C--
Confidence 4557887 8999999999999999999999999999964 225 8999999999998765421 1
Q ss_pred ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 261 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 261 i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
..++++| +++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|..|++..+.
T Consensus 88 ----------~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~ 144 (148)
T 3lv9_A 88 ----------IELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIV 144 (148)
T ss_dssp ----------CCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHH
T ss_pred ----------ccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence 2345558 78899999999999999999999999999998899999999999998654
No 57
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.66 E-value=5.3e-16 Score=136.41 Aligned_cols=138 Identities=14% Similarity=0.178 Sum_probs=102.9
Q ss_pred cccccCCCC----ceEe--cCCCCHHHHHHHHHhCCCCEEEEE--cCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHH
Q 015103 272 RIGEANGRP----FAML--RPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 343 (413)
Q Consensus 272 ~v~~~m~~~----~~~v--~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~ 343 (413)
+++++|.+. ++++ .+++++.+|+++|.+++++++||+ |++|+++|++|..|++............+...+..
T Consensus 12 ~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~ 91 (185)
T 2j9l_A 12 LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSII 91 (185)
T ss_dssp BHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEE
T ss_pred cHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCcccccee
Confidence 566778776 7788 999999999999999999999999 78899999999999998654321100000000000
Q ss_pred HHH------hcCCCCCCCcc-cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 344 QAL------QLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 344 ~~l------~~~~~~~~~~~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
.+. ........+++ +|.++++++.+++++.+|++.|.+++.+++||+| +|+++|+||+.||++++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd--~g~~vGiit~~dll~~l~ 164 (185)
T 2j9l_A 92 YFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITKKDVLKHIA 164 (185)
T ss_dssp ECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred ecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence 000 00000111222 7777899999999999999999999999999999 599999999999999875
No 58
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.66 E-value=6.5e-16 Score=128.10 Aligned_cols=120 Identities=12% Similarity=0.120 Sum_probs=99.7
Q ss_pred CCCCCCC--CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccc
Q 015103 182 GNGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ 259 (413)
Q Consensus 182 ~~~~~~~--~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~ 259 (413)
.++++|. .+++++.+++++.+|++.|.+++++++||+++ +.| +++|++|.+|+++++.... ..
T Consensus 7 ~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~~Givt~~dl~~~~~~~~---------~~- 71 (130)
T 3i8n_A 7 PVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSE--QKD---NIIGFVHRLELFKMQQSGS---------GQ- 71 (130)
T ss_dssp CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESS--STT---CEEEECCHHHHHHHHHTTT---------TT-
T ss_pred CHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---cEEEEEEHHHHHHHHhcCC---------Cc-
Confidence 3556787 55779999999999999999999999999964 225 8999999999998764321 01
Q ss_pred cccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 260 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 260 ~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
..++++| +++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|+++.+.
T Consensus 72 -----------~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~ 128 (130)
T 3i8n_A 72 -----------KQLGAVM-RPIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLV 128 (130)
T ss_dssp -----------SBHHHHS-EECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred -----------CCHHHHh-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHc
Confidence 1344557 45789999999999999999999999999999999999999999998653
No 59
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.65 E-value=6.4e-16 Score=132.67 Aligned_cols=117 Identities=19% Similarity=0.242 Sum_probs=97.3
Q ss_pred CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 268 (413)
Q Consensus 189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 268 (413)
.+++++.+++|+.+|+++|.+++++++||+|+ +| +++|++|.+|+++++...... .....
T Consensus 25 ~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~---~~---~lvGiit~~Di~~~~~~~~~~--------~~~~~------ 84 (156)
T 3k6e_A 25 KNLAVLIDTHNADHATLLLSQMTYTRVPVVTD---EK---QFVGTIGLRDIMAYQMEHDLS--------QEIMA------ 84 (156)
T ss_dssp TSSCCEETTSBHHHHHHHHTTSSSSEEEEECC----C---BEEEEEEHHHHHHHHHHHTCC--------HHHHT------
T ss_pred hHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEecchhhhhhhcccc--------ccccc------
Confidence 57999999999999999999999999999965 45 899999999999987653211 00001
Q ss_pred ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
...++++|.+++.++.+++++.+|+++|.++++ +||||++|+++|+||++|+++.+.
T Consensus 85 -~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~~g~l~GiiT~~Dil~~~~ 141 (156)
T 3k6e_A 85 -DTDIVHMTKTDVAVVSPDFTITEVLHKLVDESF--LPVVDAEGIFQGIITRKSILKAVN 141 (156)
T ss_dssp -TSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSSE--EEEECTTSBEEEEEEHHHHHHHHH
T ss_pred -ccCHHHhhcCCceecccccHHHHHHHHHHHcCC--eEEEecCCEEEEEEEHHHHHHHHH
Confidence 124566799999999999999999999987764 999999999999999999999664
No 60
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.65 E-value=5.4e-16 Score=126.78 Aligned_cols=114 Identities=20% Similarity=0.325 Sum_probs=100.2
Q ss_pred CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccc
Q 015103 186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 265 (413)
Q Consensus 186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~ 265 (413)
+|.++++++.+++++.+|++.|.+++.+.+||+|+ +| +++|++|.+|+++++....
T Consensus 6 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~G~vt~~dl~~~~~~~~------------------ 61 (122)
T 3kpb_A 6 ILSKPPITAHSNISIMEAAKILIKHNINHLPIVDE---HG---KLVGIITSWDIAKALAQNK------------------ 61 (122)
T ss_dssp HCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECT---TS---BEEEEECHHHHHHHHHTTC------------------
T ss_pred hhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEEHHHHHHHHHhcc------------------
Confidence 57888999999999999999999999999999975 45 8999999999998664310
Q ss_pred cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 266 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 266 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
..++++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|++..+.
T Consensus 62 -----~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~ 119 (122)
T 3kpb_A 62 -----KTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFG 119 (122)
T ss_dssp -----CBGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC
T ss_pred -----cCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhh
Confidence 1345558788999999999999999999999999999998899999999999998654
No 61
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.65 E-value=1.8e-15 Score=131.85 Aligned_cols=121 Identities=10% Similarity=0.056 Sum_probs=102.9
Q ss_pred CCCCCCCC--CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccc
Q 015103 181 DGNGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ 258 (413)
Q Consensus 181 ~~~~~~~~--~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~ 258 (413)
..++++|. .+++++.+++++.+|+++|.+++++++||+++ +.+ +++|++|.+|+++++.... .
T Consensus 42 ~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~~----------~ 106 (172)
T 3lhh_A 42 RTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRN--NVD---DMVGIISAKQLLSESIAGE----------R 106 (172)
T ss_dssp -CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESS--STT---SEEEEEEHHHHHHHHHTTC----------C
T ss_pred CCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---eEEEEEEHHHHHHHHhhcC----------c
Confidence 34567888 78899999999999999999999999999964 225 8999999999998664310 1
Q ss_pred ccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103 259 QPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 329 (413)
Q Consensus 259 ~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~ 329 (413)
..++++| ++++++.+++++.+|+++|.+++++.+||+|++|+++|++|..|++..+..
T Consensus 107 ------------~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~ 164 (172)
T 3lhh_A 107 ------------LELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTG 164 (172)
T ss_dssp ------------CCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred ------------ccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhC
Confidence 2355668 888999999999999999999999999999988999999999999996653
No 62
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.64 E-value=3e-15 Score=138.16 Aligned_cols=140 Identities=16% Similarity=0.290 Sum_probs=105.9
Q ss_pred ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CcEEEEEeHHHHHHHHhhhhh--hh------------
Q 015103 271 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITALAKDKAY--AQ------------ 334 (413)
Q Consensus 271 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGiit~~dl~~~~~~~~~--~~------------ 334 (413)
.+++++|.++++++.+++++.+|.++|.+++++++||||++ ++++|+|+++||+.++..... ..
T Consensus 13 ~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 92 (250)
T 2d4z_A 13 IQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADEEG 92 (250)
T ss_dssp CBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBCCC-
T ss_pred CChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcccccc
Confidence 46888999999999999999999999999999999999863 689999999999986543210 00
Q ss_pred ----------------cccCc---------------------------------------------------------cc
Q 015103 335 ----------------IHLDE---------------------------------------------------------MN 341 (413)
Q Consensus 335 ----------------~~l~~---------------------------------------------------------~~ 341 (413)
..+.+ ++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 172 (250)
T 2d4z_A 93 RNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEEMLT 172 (250)
T ss_dssp --------------------------------------------------------------------------CCSCCB
T ss_pred cccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccccccC
Confidence 00000 00
Q ss_pred HHHHHhc-CCCCCCCc---c-cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 342 IHQALQL-GQDANPSL---G-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 342 v~~~l~~-~~~~~~~~---~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
..+.... ......++ . +|.+.++++.++++|.+|..+|...|++++||++ .|+++||||+.||+++|.+
T Consensus 173 ~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~--~GrLVGIVTrkDl~kai~~ 246 (250)
T 2d4z_A 173 LEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS--MGKLVGVVALAEIQAAIEG 246 (250)
T ss_dssp HHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred hhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence 0000000 00011233 1 5788899999999999999999999999999998 5999999999999999865
No 63
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.61 E-value=4.8e-16 Score=128.37 Aligned_cols=115 Identities=11% Similarity=0.105 Sum_probs=95.1
Q ss_pred CCCC--CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103 186 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 263 (413)
Q Consensus 186 ~~~~--~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~ 263 (413)
+|.+ +++++.+++++.+|++.|.+++++++||+++ +.| +++|++|.+|+++++.... ..
T Consensus 8 iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~vGivt~~dl~~~~~~~~---------~~----- 68 (127)
T 3nqr_A 8 IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD---HIEGILMAKDLLPFMRSDA---------EA----- 68 (127)
T ss_dssp HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGGSTTC---------CC-----
T ss_pred hcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHhccC---------CC-----
Confidence 4664 4899999999999999999999999999964 225 8999999999987432110 01
Q ss_pred cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103 264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 327 (413)
Q Consensus 264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~ 327 (413)
..++++|.+ +.++.+++++.+|+++|.+++.+.+||+|++|+++|++|..|+++.+
T Consensus 69 -------~~v~~~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l 124 (127)
T 3nqr_A 69 -------FSMDKVLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI 124 (127)
T ss_dssp -------CCHHHHCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC
T ss_pred -------CCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence 234555754 67899999999999999999999999999999999999999999854
No 64
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.61 E-value=6.4e-15 Score=122.28 Aligned_cols=119 Identities=21% Similarity=0.303 Sum_probs=101.8
Q ss_pred CCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccc
Q 015103 183 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS 262 (413)
Q Consensus 183 ~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~ 262 (413)
++++|.++++++.+++++.+|++.|.+++++.+||+| +| +++|++|.+|+++++..... ..
T Consensus 6 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~Givt~~dl~~~~~~~~~--------~~---- 66 (133)
T 2ef7_A 6 VKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD----GN---KPVGIITERDIVKAIGKGKS--------LE---- 66 (133)
T ss_dssp GGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHHHTTCC--------TT----
T ss_pred HHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE----CC---EEEEEEcHHHHHHHHhcCCC--------cc----
Confidence 3457888899999999999999999999999999996 24 89999999999987653210 01
Q ss_pred ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 263 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 263 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
..++++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|++..+.
T Consensus 67 --------~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~ 124 (133)
T 2ef7_A 67 --------TKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID 124 (133)
T ss_dssp --------CBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred --------cCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHH
Confidence 2355568778899999999999999999999999999998899999999999998665
No 65
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.61 E-value=2.1e-15 Score=124.87 Aligned_cols=114 Identities=10% Similarity=0.106 Sum_probs=94.5
Q ss_pred CCC--CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103 186 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 263 (413)
Q Consensus 186 ~~~--~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~ 263 (413)
+|. .+++++.+++++.+|++.|.+++++++||+++ +.| +++|++|.+|+++++.. ..
T Consensus 10 iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~~Givt~~dl~~~~~~-----------~~----- 68 (129)
T 3jtf_A 10 IMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYED--DRD---NIIGILLAKDLLRYMLE-----------PA----- 68 (129)
T ss_dssp HCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESS--STT---CEEEEEEGGGGGGGGTC-----------TT-----
T ss_pred hCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcC--CCC---cEEEEEEHHHHHhHhcc-----------CC-----
Confidence 566 67889999999999999999999999999964 225 89999999999874310 01
Q ss_pred cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
..++++|.+ +.++.+++++.+|+++|.+++.+.+||+|++|+++|++|.+|+++.+.
T Consensus 69 -------~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~ 125 (129)
T 3jtf_A 69 -------LDIRSLVRP-AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIV 125 (129)
T ss_dssp -------SCGGGGCBC-CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHH
T ss_pred -------cCHHHHhCC-CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence 124455654 789999999999999999999999999998899999999999998654
No 66
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.61 E-value=2.7e-15 Score=123.95 Aligned_cols=118 Identities=19% Similarity=0.213 Sum_probs=100.5
Q ss_pred CCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103 184 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 263 (413)
Q Consensus 184 ~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~ 263 (413)
+++|.+++.++.+++++.+|++.|.+++++.+||+|+ | +++|++|.+|+++.+... .
T Consensus 8 ~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~----~---~~~Givt~~dl~~~~~~~-------------~--- 64 (128)
T 3gby_A 8 SYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG----E---RYLGMVHLSRLLEGRKGW-------------P--- 64 (128)
T ss_dssp GGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHTTCSSS-------------C---
T ss_pred HHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC----C---EEEEEEEHHHHHHHHhhC-------------C---
Confidence 4578899999999999999999999999999999963 4 899999999998732110 0
Q ss_pred cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
.....++++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|+++.+.
T Consensus 65 ----~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~ 125 (128)
T 3gby_A 65 ----TVKEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLA 125 (128)
T ss_dssp ----CTTCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred ----cccCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHH
Confidence 0012356668889999999999999999999999999999999999999999999998664
No 67
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.61 E-value=2.7e-15 Score=122.98 Aligned_cols=116 Identities=17% Similarity=0.232 Sum_probs=99.3
Q ss_pred CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccc
Q 015103 186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 265 (413)
Q Consensus 186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~ 265 (413)
+|.++++++.+++++.+|++.|.+++.+.+||+| +| +++|++|.+|+++++..... ...
T Consensus 6 ~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~G~it~~dl~~~~~~~~~-------~~~------- 64 (125)
T 1pbj_A 6 VMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK----EG---VRVGIVTTWDVLEAIAEGDD-------LAE------- 64 (125)
T ss_dssp HCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE----TT---EEEEEEEHHHHHHHHHHTCC-------TTT-------
T ss_pred hcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe----CC---eeEEEEeHHHHHHHHhcCCc-------ccc-------
Confidence 5778899999999999999999999999999996 25 89999999999987654211 011
Q ss_pred cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 266 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 266 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
..++++|.+++.++.+++++.++++.|.+++.+.+||+|+ |+++|++|.+|++..+.
T Consensus 65 -----~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~ 121 (125)
T 1pbj_A 65 -----VKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKM 121 (125)
T ss_dssp -----SBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC
T ss_pred -----cCHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence 2355668888999999999999999999999999999997 99999999999998664
No 68
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.61 E-value=2e-15 Score=142.63 Aligned_cols=117 Identities=15% Similarity=0.244 Sum_probs=104.1
Q ss_pred ccccccCCCCceEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHH
Q 015103 271 PRIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA 345 (413)
Q Consensus 271 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~ 345 (413)
.+++++|.++++++.+++++.+|++.|.++ +++++||+|++|+++|++|.+|++... .+.++.+
T Consensus 137 ~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~~----------~~~~v~~- 205 (286)
T 2oux_A 137 ETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND----------DDTLIAD- 205 (286)
T ss_dssp TBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC----------TTSBHHH-
T ss_pred HHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcCC----------CCCcHHH-
Confidence 467788999999999999999999999987 788899999899999999999987631 1346666
Q ss_pred HhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 346 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 346 l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
+|.++++++++++++.+|++.|.+++.+++|||| ++|+++|+||..||++++.
T Consensus 206 ------------im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd-~~g~lvGiIT~~Dil~~i~ 258 (286)
T 2oux_A 206 ------------ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTD-YDDHLLGIVTVDDIIDVID 258 (286)
T ss_dssp ------------HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred ------------HcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence 6667899999999999999999999999999999 5899999999999999874
No 69
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.60 E-value=1.8e-15 Score=129.15 Aligned_cols=116 Identities=11% Similarity=0.126 Sum_probs=99.5
Q ss_pred CCCC--CcEEeCCCCCHHHHHHHHHhCCccEEEEE-ecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccc
Q 015103 186 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPII-HSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS 262 (413)
Q Consensus 186 ~~~~--~~v~v~~~~sl~ea~~~m~~~~v~~lpVv-d~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~ 262 (413)
+|.+ +++++.+++++.+|++.|.+++++++||+ ++ +.| +++|++|.+|+++++.... .
T Consensus 25 iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~--~~~---~lvGivt~~dl~~~~~~~~----------~---- 85 (153)
T 3oco_A 25 VMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADN--DKD---KIIGYAYNYDIVRQARIDD----------K---- 85 (153)
T ss_dssp HSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETT--EEE---EEEEEEEHHHHHHHHHHHT----------T----
T ss_pred EecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECC--CCC---cEEEEEEHHHHHhHHhcCC----------C----
Confidence 5664 78999999999999999999999999999 43 124 8999999999998765421 1
Q ss_pred ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103 263 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 329 (413)
Q Consensus 263 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~ 329 (413)
..++++| +++.++.+++++.+|+++|.+++++.+||+|++|+++|++|..|++..+..
T Consensus 86 --------~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~ 143 (153)
T 3oco_A 86 --------AKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFG 143 (153)
T ss_dssp --------SBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC
T ss_pred --------CcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhc
Confidence 2355568 789999999999999999999999999999989999999999999996653
No 70
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.60 E-value=2e-15 Score=125.34 Aligned_cols=118 Identities=8% Similarity=0.100 Sum_probs=97.0
Q ss_pred CCC--CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103 186 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 263 (413)
Q Consensus 186 ~~~--~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~ 263 (413)
+|. .+++++.+++++.+|+++|.+++++++||+++ +.| +++|++|.+|+++++.... . ..
T Consensus 7 iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~--~~~---~lvGivt~~dl~~~~~~~~-------~-----~~- 68 (130)
T 3hf7_A 7 IMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRD--SLD---DAISMLRVREAYRLMTEKK-------E-----FT- 68 (130)
T ss_dssp HSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESS--SGG---GEEEEEEHHHHHHHHTSSS-------C-----CC-
T ss_pred hCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcC--CCC---cEEEEEEHHHHHHHHhccC-------c-----cc-
Confidence 454 46899999999999999999999999999953 234 8999999999998654310 0 00
Q ss_pred cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
...++++| +++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|.+|++..+.
T Consensus 69 ------~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~ 126 (130)
T 3hf7_A 69 ------KEIMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIV 126 (130)
T ss_dssp ------HHHHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred ------hhhHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHh
Confidence 11345557 56789999999999999999999999999999999999999999998654
No 71
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.60 E-value=4.8e-15 Score=127.51 Aligned_cols=128 Identities=17% Similarity=0.214 Sum_probs=103.9
Q ss_pred CCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccc
Q 015103 183 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS 262 (413)
Q Consensus 183 ~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~ 262 (413)
++++|.++++++.+++|+.+|+++|.+++++.+||+|+ +| +++|++|.+|+++++...+..... . .
T Consensus 7 v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~~---~lvGivt~~dl~~~~~~~~~~~~~------~--~ 72 (160)
T 2o16_A 7 VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA---NK---KLLGIVSQRDLLAAQESSLQRSAQ------G--D 72 (160)
T ss_dssp GGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHHHCC--------------
T ss_pred HHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHHHhhccccc------c--c
Confidence 34578888999999999999999999999999999974 45 899999999999987653321100 0 0
Q ss_pred ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 263 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 263 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
-......++++|.+++.++.+++++.+|+++|.+++++.+||+|+ |+++|+||..|++..+.
T Consensus 73 ---~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~ 134 (160)
T 2o16_A 73 ---SLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAI 134 (160)
T ss_dssp ------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHH
T ss_pred ---chhcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence 001123466779899999999999999999999999999999997 99999999999998654
No 72
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.60 E-value=5.4e-15 Score=127.03 Aligned_cols=119 Identities=13% Similarity=0.196 Sum_probs=99.5
Q ss_pred CCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103 184 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 263 (413)
Q Consensus 184 ~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~ 263 (413)
+++|.++ +++.+++++.+|++.|.+++++.+||+|+ +| +++|++|.+|+++++.... ....
T Consensus 20 ~~im~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~-------~~~~----- 80 (159)
T 3fv6_A 20 KDFQSIP-VVIHENVSVYDAICTMFLEDVGTLFVVDR---DA---VLVGVLSRKDLLRASIGQQ-------ELTS----- 80 (159)
T ss_dssp GGSCBCC-CEEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHTSCS-------CTTT-----
T ss_pred HHHcCCC-EEECCCCcHHHHHHHHHHCCCCEEEEEcC---CC---cEEEEEeHHHHHHHhhccC-------cccC-----
Confidence 4467764 59999999999999999999999999975 45 8999999999998663210 0011
Q ss_pred cccccccccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCC---cEEEEEeHHHHHHHHh
Q 015103 264 IQLGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDND---SLLDIYSRSDITALAK 328 (413)
Q Consensus 264 l~i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g---~lvGiit~~dl~~~~~ 328 (413)
..++++|.+ ++.++.+++++.+|+++|.+++++.+||+|++| +++|++|..|++..+.
T Consensus 81 -------~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~ 143 (159)
T 3fv6_A 81 -------VPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILV 143 (159)
T ss_dssp -------CBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHH
T ss_pred -------cCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHH
Confidence 245566877 889999999999999999999999999999888 9999999999999665
No 73
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.60 E-value=3.7e-15 Score=140.22 Aligned_cols=117 Identities=18% Similarity=0.272 Sum_probs=101.7
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHH
Q 015103 272 RIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL 346 (413)
Q Consensus 272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l 346 (413)
+++++|.++++++.+++++.+|++.|.++ +++++||+|++|+++|++|.+|++... .+.++.+
T Consensus 136 ~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~----------~~~~v~~-- 203 (278)
T 2yvy_A 136 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD----------PRTRVAE-- 203 (278)
T ss_dssp BGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHSC----------TTCBSTT--
T ss_pred hHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcCC----------CCCcHHH--
Confidence 56777999999999999999999999987 789999999889999999999997631 0233433
Q ss_pred hcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103 347 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 347 ~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~ 412 (413)
+|.+++++|++++++.+|++.|.+++.+.+|||| ++|+++|+||..||++.+.+
T Consensus 204 -----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGivT~~Dil~~i~~ 257 (278)
T 2yvy_A 204 -----------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD-EEGRLVGIVTVDDVLDVLEA 257 (278)
T ss_dssp -----------TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHC--
T ss_pred -----------HhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEe-CCCeEEEEEEHHHHHHHHHH
Confidence 7777899999999999999999999999999999 58999999999999998753
No 74
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.59 E-value=1.4e-15 Score=127.22 Aligned_cols=117 Identities=9% Similarity=0.100 Sum_probs=96.2
Q ss_pred CCC--CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103 186 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 263 (413)
Q Consensus 186 ~~~--~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~ 263 (413)
+|. .+++++.+++++.+|+++|.+++++++||+++ +.| +++|++|.+|+++++... ....
T Consensus 8 iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~--~~~---~~vGivt~~dl~~~~~~~--------~~~~----- 69 (136)
T 3lfr_A 8 IMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGE--SHD---DVLGVLLAKDLLPLILKA--------DGDS----- 69 (136)
T ss_dssp HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGGGSS--------SGGG-----
T ss_pred ccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHHhc--------cCCC-----
Confidence 465 56899999999999999999999999999964 225 899999999998754210 0011
Q ss_pred cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
..++++|.+ +.++.+++++.+|+++|.+++++.+||+|++|+++|++|.+|++..+.
T Consensus 70 -------~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~ 126 (136)
T 3lfr_A 70 -------DDVKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIV 126 (136)
T ss_dssp -------CCGGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC-
T ss_pred -------cCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence 234556755 889999999999999999999999999999999999999999998543
No 75
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.59 E-value=6.4e-15 Score=123.02 Aligned_cols=119 Identities=20% Similarity=0.334 Sum_probs=100.1
Q ss_pred CCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhH-HHHHHhhccCCCCCccccccccc
Q 015103 184 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI-LKCICRHFKHSSSSLPILQQPVS 262 (413)
Q Consensus 184 ~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dI-l~~l~~~~~~~~~~~~~~~~~i~ 262 (413)
+++|.++++++.+++++.+|++.|.+++.+.+||+|+ +| +++|++|.+|+ ++++... ..
T Consensus 11 ~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~--------~~------ 70 (138)
T 2p9m_A 11 KDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDD---EN---KVIGIVTTTDIGYNLIRDK--------YT------ 70 (138)
T ss_dssp GGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECT---TC---BEEEEEEHHHHHHHHTTTC--------CC------
T ss_pred HHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECC---CC---eEEEEEEHHHHHHHHHhhc--------cc------
Confidence 4578889999999999999999999999999999975 45 89999999999 7754321 00
Q ss_pred ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCC-----CCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 263 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQAD-----VSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 263 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
....++++|.+++.++.+++++.+|++.|.+++ .+.+||+|++|+++|++|..|+++.+.
T Consensus 71 ------~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~ 135 (138)
T 2p9m_A 71 ------LETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTIS 135 (138)
T ss_dssp ------SSCBHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred ------CCcCHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHH
Confidence 112455668888999999999999999999999 999999998899999999999998654
No 76
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.59 E-value=1e-14 Score=121.80 Aligned_cols=121 Identities=15% Similarity=0.271 Sum_probs=101.0
Q ss_pred CCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccc
Q 015103 183 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS 262 (413)
Q Consensus 183 ~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~ 262 (413)
++++|.++++++.+++++.+|++.|.+++++.+||+|+ +| +++|++|.+|+++.+.... .
T Consensus 9 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~-------~------- 68 (138)
T 2yzi_A 9 IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND---DG---NVVGFFTKSDIIRRVIVPG-------L------- 68 (138)
T ss_dssp GGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTTTC-------C-------
T ss_pred HHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHHhcC-------C-------
Confidence 34578889999999999999999999999999999974 45 8999999999975221100 0
Q ss_pred ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103 263 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 329 (413)
Q Consensus 263 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~ 329 (413)
.....++++|.+++.++.+++++.+|++.|.+++.+.+ |+|++|+++|++|..|++..+..
T Consensus 69 -----~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~ 129 (138)
T 2yzi_A 69 -----PYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRR 129 (138)
T ss_dssp -----CTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHC
T ss_pred -----cccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHH
Confidence 01124566688899999999999999999999999999 99988999999999999997653
No 77
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.59 E-value=1.8e-14 Score=123.42 Aligned_cols=133 Identities=14% Similarity=0.181 Sum_probs=102.8
Q ss_pred CCCCCCCcEEeCCCCCHHHHHHHHHhCCccE-EEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccc
Q 015103 184 GRPCPRPLVQAGPYDSLKEVALKILQNKVAT-VPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS 262 (413)
Q Consensus 184 ~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~-lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~ 262 (413)
+++|.++++++.+++++.+|++.|.+++++. +||+|+ + +++|++|.+|+++++...+.........+.....
T Consensus 19 ~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~----~---~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 91 (157)
T 1o50_A 19 CKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD----N---KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMK 91 (157)
T ss_dssp TTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET----T---EEEEEEEHHHHHHHHHHHHHCCCC-------CCC
T ss_pred hhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEEC----C---EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHH
Confidence 4578999999999999999999999999999 999974 2 6999999999998765321000000000000000
Q ss_pred ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 263 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 263 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
......++++|.+ ++++.+++++.+|+++|.+++++.+||+|++|+++|++|..|+++.+.
T Consensus 92 ----~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~ 152 (157)
T 1o50_A 92 ----RLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALW 152 (157)
T ss_dssp ----CCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred ----HHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence 0112356777988 999999999999999999999999999998899999999999998664
No 78
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.58 E-value=2.1e-14 Score=120.60 Aligned_cols=119 Identities=18% Similarity=0.267 Sum_probs=100.0
Q ss_pred CCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103 184 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 263 (413)
Q Consensus 184 ~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~ 263 (413)
+++|.++++++.+++++.+|++.|.+++++.+||+|+ +| ..+++|++|.+|+++++..... ..
T Consensus 8 ~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~-~~~~~Givt~~dl~~~~~~~~~--------~~----- 70 (141)
T 2rih_A 8 SELLKRPPVSLPETATIREVATELAKNRVGLAVLTAR---DN-PKRPVAVVSERDILRAVAQRLD--------LD----- 70 (141)
T ss_dssp GGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEET---TE-EEEEEEEEEHHHHHHHHHTTCC--------TT-----
T ss_pred HHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC-cceeEEEEEHHHHHHHHhcCCC--------CC-----
Confidence 4578889999999999999999999999999999975 21 1169999999999987643210 11
Q ss_pred cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103 264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 327 (413)
Q Consensus 264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~ 327 (413)
..++++|.+++.++.++ ++.+|++.|.+++.+.+||+|++|+++|++|.+|+++..
T Consensus 71 -------~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~ 126 (141)
T 2rih_A 71 -------GPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER 126 (141)
T ss_dssp -------SBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred -------CCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHH
Confidence 24556688899999999 999999999999999999999889999999999998744
No 79
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.58 E-value=3.7e-15 Score=126.50 Aligned_cols=122 Identities=15% Similarity=0.170 Sum_probs=99.0
Q ss_pred CCC--CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103 186 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 263 (413)
Q Consensus 186 ~~~--~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~ 263 (413)
+|. .+++++.+++++.+|++.|.+++++++||+|+ +| +++|++|.+|+++++...... ....
T Consensus 20 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~~----------~~~~ 83 (150)
T 3lqn_A 20 LMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP---MY---KLHGLISTAMILDGILGLERI----------EFER 83 (150)
T ss_dssp HSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHTBCSSSB----------CGGG
T ss_pred cccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECC---CC---CEEEEEEHHHHHHHHHhhccc----------chhH
Confidence 455 46899999999999999999999999999975 45 899999999999865321100 0000
Q ss_pred cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103 264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 329 (413)
Q Consensus 264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~ 329 (413)
.....++++|.+++.++.+++++.+|+++|.++++ +||+|++|+++|++|..|+++.+..
T Consensus 84 ----~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~ 143 (150)
T 3lqn_A 84 ----LEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNK 143 (150)
T ss_dssp ----GGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred ----HhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHH
Confidence 01235667788899999999999999999999887 9999989999999999999997653
No 80
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.58 E-value=2.2e-14 Score=124.00 Aligned_cols=115 Identities=17% Similarity=0.263 Sum_probs=98.9
Q ss_pred CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 268 (413)
Q Consensus 189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 268 (413)
.+++++.+++++.+|++.|.+++++.+||+|+ +| +++|++|.+|+++++...... ..
T Consensus 35 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~~------~~----------- 91 (165)
T 3fhm_A 35 RDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA---DG---VVLGIFTERDLVKAVAGQGAA------SL----------- 91 (165)
T ss_dssp SCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHHHHGGG------GG-----------
T ss_pred CCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHHHhcCCc------cc-----------
Confidence 36899999999999999999999999999975 45 899999999999987653211 01
Q ss_pred ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
..+++++|.++++++.+++++.+|+++|.+++++.+||+|+ |+++|++|..|++..+.
T Consensus 92 -~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~ 149 (165)
T 3fhm_A 92 -QQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARI 149 (165)
T ss_dssp -TSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTT
T ss_pred -cCCHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence 12455668888999999999999999999999999999998 99999999999999765
No 81
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.58 E-value=1.7e-14 Score=125.99 Aligned_cols=121 Identities=7% Similarity=0.056 Sum_probs=100.7
Q ss_pred CCCCCCCCC--CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccc
Q 015103 180 MDGNGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 257 (413)
Q Consensus 180 ~~~~~~~~~--~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~ 257 (413)
...++++|. .+++++.+++++.+|+++|.+++++++||+++ +.| +++|++|.+|+++++....
T Consensus 35 ~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~Dl~~~~~~~~---------- 99 (173)
T 3ocm_A 35 ERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRG--SLD---EVVGIGRAKDLVADLITEG---------- 99 (173)
T ss_dssp TSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESS--STT---SEEEEEEHHHHHHHHHHHS----------
T ss_pred CCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---CEEEEEEHHHHHHHHhcCC----------
Confidence 345677886 46899999999999999999999999999964 225 8999999999998764321
Q ss_pred cccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103 258 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 329 (413)
Q Consensus 258 ~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~ 329 (413)
.. .++ |.++++++.+++++.+|+++|.+++++.+||+|++|+++|+||..|++..+..
T Consensus 100 ~~------------~v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~ 157 (173)
T 3ocm_A 100 RV------------RRN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAG 157 (173)
T ss_dssp SC------------CGG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHC
T ss_pred cc------------hhH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhC
Confidence 11 122 23567899999999999999999999999999999999999999999997654
No 82
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.57 E-value=1.3e-14 Score=127.68 Aligned_cols=123 Identities=13% Similarity=0.116 Sum_probs=103.3
Q ss_pred CCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccc
Q 015103 183 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS 262 (413)
Q Consensus 183 ~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~ 262 (413)
++++|.++++++.+++++.+|+++|.+++++++||+++ +| +++|++|.+||++++..... .
T Consensus 11 v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~---~g---~~vGivt~~dl~~~~~~~~~------~------- 71 (184)
T 1pvm_A 11 VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD---NG---NDVGLLSERSIIKRFIPRNK------K------- 71 (184)
T ss_dssp GGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT---TS---CEEEEEEHHHHHHHTGGGCC------C-------
T ss_pred HHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHhhccc------C-------
Confidence 34578889999999999999999999999999999964 45 89999999999986542100 0
Q ss_pred ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103 263 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 329 (413)
Q Consensus 263 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~ 329 (413)
.....++++|.+++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|..|++..+..
T Consensus 72 -----~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~ 133 (184)
T 1pvm_A 72 -----PDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR 133 (184)
T ss_dssp -----GGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred -----cccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence 11124566788899999999999999999999999999999988999999999999885543
No 83
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.57 E-value=8.9e-15 Score=124.17 Aligned_cols=117 Identities=15% Similarity=0.220 Sum_probs=98.8
Q ss_pred CCCCCCC--CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccc
Q 015103 183 NGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 260 (413)
Q Consensus 183 ~~~~~~~--~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~ 260 (413)
++++|.+ +++++.+++++.+|++.|.+++++.+||+|+ +| +++|++|.+|+++++..... ...
T Consensus 30 v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~-------~~~-- 94 (149)
T 3k2v_A 30 VNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD---DM---NIIGIFTDGDLRRVFDTGVD-------MRD-- 94 (149)
T ss_dssp GGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT---TC---BEEEEEEHHHHHHHHCSSSC-------CTT--
T ss_pred HHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC---CC---cEEEEecHHHHHHHHhcCCC-------ccc--
Confidence 3457888 8999999999999999999999999999975 45 89999999999986643110 011
Q ss_pred ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103 261 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325 (413)
Q Consensus 261 i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~ 325 (413)
..++++|.+++.++.+++++.+|++.|.+++++.+||+|++ +++|++|..|+++
T Consensus 95 ----------~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~ 148 (149)
T 3k2v_A 95 ----------ASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR 148 (149)
T ss_dssp ----------CBHHHHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred ----------CcHHHHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence 24556688888999999999999999999999999999965 9999999999864
No 84
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.57 E-value=1e-14 Score=121.46 Aligned_cols=114 Identities=18% Similarity=0.272 Sum_probs=96.6
Q ss_pred CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 268 (413)
Q Consensus 189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 268 (413)
++++++.+++++.+|++.|.+++++.+||+| +| +++|++|.+|+++.+..... . .
T Consensus 17 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~Givt~~dl~~~~~~~~~------~------------~ 71 (135)
T 2rc3_A 17 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK----DE---KLVGILTERDFSRKSYLLDK------P------------V 71 (135)
T ss_dssp CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHGGGSSS------C------------G
T ss_pred CCcEEECCCCcHHHHHHHHHhcCCCEEEEEE----CC---EEEEEEehHHHHHHHHHcCC------C------------c
Confidence 7899999999999999999999999999996 25 89999999999874432100 0 0
Q ss_pred ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
....++++|.+++.++.+++++.+|+++|.+++++.+||+| +|+++|++|.+|++..+.
T Consensus 72 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~ 130 (135)
T 2rc3_A 72 KDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI 130 (135)
T ss_dssp GGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred ccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHH
Confidence 12346667888999999999999999999999999999999 799999999999998654
No 85
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.57 E-value=3e-14 Score=121.33 Aligned_cols=115 Identities=19% Similarity=0.229 Sum_probs=96.1
Q ss_pred CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 268 (413)
Q Consensus 189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 268 (413)
++++++.+++++.+|++.|.+++++.+||+|+ +| +++|++|.+|+++++..... .....
T Consensus 29 ~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~~---~~vGivt~~dl~~~~~~~~~------~~~~~--------- 87 (152)
T 2uv4_A 29 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDE---KG---RVVDIYSKFDVINLAAEKTY------NNLDV--------- 87 (152)
T ss_dssp SSCCCEETTCBHHHHHHHHHHHCCSEEEEECT---TS---BEEEEEEHHHHHHHHHCSSC------CCTTS---------
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCceEeEECC---CC---cEEEEEeHHHHHHHhcchhh------hhhcc---------
Confidence 67889999999999999999999999999975 45 89999999999986643210 00112
Q ss_pred ccccccccCC------CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103 269 WVPRIGEANG------RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 327 (413)
Q Consensus 269 ~~~~v~~~m~------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~ 327 (413)
.+.++|. +++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|..|++..+
T Consensus 88 ---~v~~~m~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~l 149 (152)
T 2uv4_A 88 ---SVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQAL 149 (152)
T ss_dssp ---BGGGGGGTCCHHHHTCSEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred ---hHHHHHhhhhcccCCCeEECCCCcHHHHHHHHHHcCCeEEEEECCCCeEEEEEEHHHHHHHH
Confidence 2344454 6788999999999999999999999999999889999999999998865
No 86
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.57 E-value=1.8e-14 Score=121.00 Aligned_cols=119 Identities=22% Similarity=0.230 Sum_probs=97.0
Q ss_pred CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccc
Q 015103 186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 265 (413)
Q Consensus 186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~ 265 (413)
+|.++++++.+++++.+|++.|.+++++.+||+|+ +| +++|++|.+|+++++..... .....
T Consensus 16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~------~~~~~------ 77 (144)
T 2nyc_A 16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NG---YLINVYEAYDVLGLIKGGIY------NDLSL------ 77 (144)
T ss_dssp CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHTC----------CCS------
T ss_pred CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcC---CC---cEEEEEcHHHHHHHhccccc------ccCCc------
Confidence 67788999999999999999999999999999975 45 89999999999987643110 00112
Q ss_pred cccccccccccCCC------CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 266 LGTWVPRIGEANGR------PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 266 i~~~~~~v~~~m~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
.++++|.+ ++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+++.+.
T Consensus 78 ------~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~ 140 (144)
T 2nyc_A 78 ------SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL 140 (144)
T ss_dssp ------BHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred ------cHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHH
Confidence 23444543 6889999999999999999999999999998899999999999998654
No 87
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.56 E-value=1.1e-14 Score=123.39 Aligned_cols=133 Identities=18% Similarity=0.260 Sum_probs=101.3
Q ss_pred CCCCCC--CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccc
Q 015103 184 GRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV 261 (413)
Q Consensus 184 ~~~~~~--~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i 261 (413)
+++|.+ +++++.+++++.+|++.|.+++++.+||+|+ +| +++|++|.+|+++++...... ..+.. .
T Consensus 8 ~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~G~vt~~dl~~~~~~~~~~-----~~~~~-~ 75 (152)
T 4gqw_A 8 GEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDE---DW---KLVGLVSDYDLLALDSGDSTW-----KTFNA-V 75 (152)
T ss_dssp GGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHTTCC----CC-----HHHHH-H
T ss_pred hhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeC---CC---eEEEEEEHHHHHHhhcccCcc-----cchHH-H
Confidence 456777 7999999999999999999999999999975 45 899999999998643211000 00000 0
Q ss_pred cccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 262 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 262 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
...........++++|.++++++.+++++.+|+++|.+++++.+||+|++|+++|++|.+|+++.+.
T Consensus 76 ~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~ 142 (152)
T 4gqw_A 76 QKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAAL 142 (152)
T ss_dssp HTC-----CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred HHHHHHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHH
Confidence 0000001123566778888899999999999999999999999999998999999999999999665
No 88
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.56 E-value=2.6e-14 Score=122.16 Aligned_cols=125 Identities=15% Similarity=0.225 Sum_probs=101.1
Q ss_pred CCCCCCC--CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccc
Q 015103 183 NGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 260 (413)
Q Consensus 183 ~~~~~~~--~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~ 260 (413)
++++|.+ +++++.+++++.+|++.|.+++++++||+|+ +| +++|++|.+|+++++..... ..
T Consensus 13 v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~--------~~-- 76 (157)
T 2emq_A 13 VKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT---SY---KLHGLISMTMMMDAILGLER--------IE-- 76 (157)
T ss_dssp STTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT---TC---CEEEEEEHHHHHHHSBCSSS--------BC--
T ss_pred HHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC---CC---CEEEEeeHHHHHHHHhcccc--------cc--
Confidence 4567876 8899999999999999999999999999975 45 89999999999985432100 00
Q ss_pred ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103 261 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 329 (413)
Q Consensus 261 i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~ 329 (413)
... .....++++|.+++.++.+++++.+|++.|.++++ +||+|++|+++|++|.+|++..+..
T Consensus 77 ~~~----~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~ 139 (157)
T 2emq_A 77 FER----LETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNK 139 (157)
T ss_dssp GGG----GGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHH
T ss_pred hHH----hcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHH
Confidence 000 01234667788899999999999999999999987 9999988999999999999986653
No 89
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.56 E-value=9.6e-14 Score=127.90 Aligned_cols=212 Identities=12% Similarity=0.151 Sum_probs=131.2
Q ss_pred CcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhhccH
Q 015103 85 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI 164 (413)
Q Consensus 85 ~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~~i 164 (413)
.++.|+|- .+++++..+.++.+|++.|.++++..+||+|.+ ++++|++|..|++..+...... ........++
T Consensus 7 ~~v~~im~--~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-~~l~Giit~~di~~~~~~~~~~----~~~~~~~~~~ 79 (245)
T 3l2b_A 7 LKVEDLEM--DKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN-NHLLGMLSTSNITATYMDIWDS----NILAKSATSL 79 (245)
T ss_dssp CBGGGSCC--BCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHHCCCCT----THHHHTTCCH
T ss_pred CcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHhhhh----hhhhhccCCH
Confidence 56888884 568999999999999999999999999999975 5699999999999876532110 0111112222
Q ss_pred HHHHHHHHhh--hcccc--------------CCCC-CCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCC--
Q 015103 165 SAWKVGKLQL--NLKRQ--------------MDGN-GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAG-- 225 (413)
Q Consensus 165 ~~~~~~~~~~--~~~~~--------------~~~~-~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g-- 225 (413)
..+.+..... ..... .... .......++.+ .+ -.++...+.+.+++.+++........
T Consensus 80 ~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIv-gd--r~~~~~~~i~~~~~~liit~~~~~~~~v 156 (245)
T 3l2b_A 80 DNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIA-GD--RAEIQAELIELKVSLLIVTGGHTPSKEI 156 (245)
T ss_dssp HHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEE-CS--CHHHHHHHHHTTCSEEEECTTCCCCHHH
T ss_pred HHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEE-CC--CHHHHHHHHHcCCCEEEECCCCCCCHHH
Confidence 2222211100 00000 0000 00112333333 22 47888888999999998874311000
Q ss_pred ----CccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccccccccccCC-CCceEecCCCCHHHHHHHHHhC
Q 015103 226 ----SCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG-RPFAMLRPTASLGSALALLVQA 300 (413)
Q Consensus 226 ----~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~~~m~~~ 300 (413)
....+..+.|..|........ .....++++|+ +++.++.+++++.+|+++|.++
T Consensus 157 ~~~a~~~~~~~i~t~~d~~~~~~~~---------------------~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~ 215 (245)
T 3l2b_A 157 IELAKKNNITVITTPHDSFTASRLI---------------------VQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSET 215 (245)
T ss_dssp HHHHHHHTCEEEECSSCHHHHHHHG---------------------GGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEeCCChHHHHHHH---------------------hcCCceeeEecCCccEEECCCCcHHHHHHHHHhc
Confidence 000233344444433321110 11124667798 8999999999999999999999
Q ss_pred CCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103 301 DVSSIPIVDDNDSLLDIYSRSDITALA 327 (413)
Q Consensus 301 ~~~~lpVvd~~g~lvGiit~~dl~~~~ 327 (413)
+++++||+|++|+++|++|.+|+++..
T Consensus 216 ~~~~~pVvd~~~~~~Giit~~dll~~~ 242 (245)
T 3l2b_A 216 RYSNYPVIDENNKVVGSIARFHLISTH 242 (245)
T ss_dssp CCSEEEEECTTCBEEEEEECC------
T ss_pred CCceEEEEcCCCeEEEEEEHHHhhchh
Confidence 999999999999999999999998754
No 90
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.56 E-value=7.1e-15 Score=125.65 Aligned_cols=122 Identities=18% Similarity=0.190 Sum_probs=99.8
Q ss_pred CCCC--CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccc
Q 015103 185 RPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS 262 (413)
Q Consensus 185 ~~~~--~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~ 262 (413)
++|. ++++++.+++++.+|++.|.+++++++||+|+ +| +++|++|.+|+++++...... ...
T Consensus 19 dim~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~---~~---~~~Giit~~dl~~~~~~~~~~--------~~~-- 82 (156)
T 3ctu_A 19 TFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD---EK---QFVGTIGLRDIMAYQMEHDLS--------QEI-- 82 (156)
T ss_dssp GGEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC----C---BEEEEEEHHHHHHHHHHHTCC--------HHH--
T ss_pred HHcCcccCceEECCCCCHHHHHHHHHHCCCceEeEECC---CC---EEEEEEcHHHHHHHHHhcccc--------ccc--
Confidence 4666 67899999999999999999999999999975 45 899999999999977642110 000
Q ss_pred ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103 263 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 329 (413)
Q Consensus 263 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~ 329 (413)
.....++++|.+++.++.+++++.+|++.|.+++ .+||+|++|+++|++|.+|+++.+.+
T Consensus 83 -----~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~--~lpVvd~~g~~~Giit~~dil~~l~~ 142 (156)
T 3ctu_A 83 -----MADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNA 142 (156)
T ss_dssp -----HTTSBGGGGCBCSCCCBCSSCCHHHHHHHTTTSS--EEEEECTTSBEEEEEETTHHHHHHHH
T ss_pred -----cccCcHHHhccCCceeeCCCCcHHHHHHHHHHcC--eEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence 0012456668889999999999999999999886 79999989999999999999997653
No 91
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.56 E-value=3.3e-14 Score=133.67 Aligned_cols=121 Identities=17% Similarity=0.246 Sum_probs=104.1
Q ss_pred ccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhC-----CccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCC
Q 015103 178 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS 252 (413)
Q Consensus 178 ~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~-----~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~ 252 (413)
+....++.+|.++++++.+++++.+|++.|.++ +++++||+|+ +| +++|++|.+|++..
T Consensus 132 ~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~---~~---~lvGivt~~dll~~---------- 195 (278)
T 2yvy_A 132 YEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KG---RLKGVLSLRDLIVA---------- 195 (278)
T ss_dssp SCTTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECT---TC---BEEEEEEHHHHHHS----------
T ss_pred CCcchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECC---CC---CEEEEEEHHHHhcC----------
Confidence 556677889999999999999999999999987 7899999975 45 89999999999861
Q ss_pred CcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103 253 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 329 (413)
Q Consensus 253 ~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~ 329 (413)
... ..++++|.++++++++++++.+|++.|.+++.+.+||||++|+++|+||..|++..+..
T Consensus 196 ---~~~------------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~ 257 (278)
T 2yvy_A 196 ---DPR------------TRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA 257 (278)
T ss_dssp ---CTT------------CBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC--
T ss_pred ---CCC------------CcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHH
Confidence 011 23556688889999999999999999999999999999999999999999999986653
No 92
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.56 E-value=1.8e-14 Score=123.42 Aligned_cols=115 Identities=14% Similarity=0.139 Sum_probs=95.8
Q ss_pred CCCCCCCC--CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccc
Q 015103 182 GNGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ 259 (413)
Q Consensus 182 ~~~~~~~~--~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~ 259 (413)
.++++|.+ +++++.+++++.+|++.|.+++++++||+++ +.+ +++|++|.+|+++++... ..
T Consensus 39 ~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~----------~~- 102 (156)
T 3oi8_A 39 EVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGE--DKD---EVLGILHAKDLLKYMFNP----------EQ- 102 (156)
T ss_dssp BGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGSSCG----------GG-
T ss_pred CHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHHcC----------Cc-
Confidence 35568876 7899999999999999999999999999964 224 799999999998732110 11
Q ss_pred cccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHH
Q 015103 260 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT 324 (413)
Q Consensus 260 ~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~ 324 (413)
..++++|.+ +.++.+++++.+|+++|.+++.+.+||+|++|+++|++|..|++
T Consensus 103 -----------~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil 155 (156)
T 3oi8_A 103 -----------FHLKSILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII 155 (156)
T ss_dssp -----------CCHHHHCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred -----------ccHHHHcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence 234555755 78999999999999999999999999999999999999999985
No 93
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.55 E-value=2.8e-15 Score=124.48 Aligned_cols=116 Identities=16% Similarity=0.257 Sum_probs=97.3
Q ss_pred CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHH-HHHhhccCCCCCccccccccccc
Q 015103 186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CICRHFKHSSSSLPILQQPVSSI 264 (413)
Q Consensus 186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~-~l~~~~~~~~~~~~~~~~~i~~l 264 (413)
+|.++++++.+++++.+|++.|.+++++.+||+|+ +| +++|++|.+|+++ ++.....
T Consensus 13 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~~---------------- 70 (133)
T 1y5h_A 13 IMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD---DD---RLHGMLTDRDIVIKGLAAGLD---------------- 70 (133)
T ss_dssp HSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG---GG---BEEEEEEHHHHHHTTGGGTCC----------------
T ss_pred HhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECC---CC---eEEEEEeHHHHHHHHHhcCCC----------------
Confidence 56778899999999999999999999999999965 45 8999999999984 3321100
Q ss_pred ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103 265 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 327 (413)
Q Consensus 265 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~ 327 (413)
.....++++|.+++.++.+++++.+|+++|.+++.+.+||+|+ |+++|++|.+|+++.+
T Consensus 71 ---~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l 129 (133)
T 1y5h_A 71 ---PNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHL 129 (133)
T ss_dssp ---TTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTC
T ss_pred ---ccccCHHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence 0112456668889999999999999999999999999999997 9999999999998854
No 94
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.54 E-value=8.8e-15 Score=127.86 Aligned_cols=137 Identities=18% Similarity=0.258 Sum_probs=100.2
Q ss_pred CCCC--CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCC--CCCcccccccc
Q 015103 186 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS--SSSLPILQQPV 261 (413)
Q Consensus 186 ~~~~--~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~--~~~~~~~~~~i 261 (413)
+|.+ +++++.+++++.+|+++|.+++++.+||+|+ +| +++|++|.+||++++....... ....+......
T Consensus 9 im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (180)
T 3sl7_A 9 FMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDD---NW---TLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTW 82 (180)
T ss_dssp HSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHTCC-------------------CC
T ss_pred hcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---eEEEEEEHHHHHhhhhhccccCCcccccccccchh
Confidence 4666 7899999999999999999999999999975 45 8999999999986432110000 00000000000
Q ss_pred c------ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 262 S------SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 262 ~------~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
. .+........++++|.++++++.+++++.+|+++|.+++++.+||+|++|+++|+||..|+++.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~ 155 (180)
T 3sl7_A 83 KTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAAL 155 (180)
T ss_dssp CSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred hhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHH
Confidence 0 000011123577789888999999999999999999999999999999999999999999999665
No 95
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.53 E-value=3.5e-14 Score=134.05 Aligned_cols=121 Identities=14% Similarity=0.186 Sum_probs=104.9
Q ss_pred ccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhC-----CccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCC
Q 015103 178 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS 252 (413)
Q Consensus 178 ~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~-----~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~ 252 (413)
+....++.+|.++++++.+++++.+|++.|.++ +++++||+|+ +| +++|++|.+|+++.
T Consensus 134 ~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~---~~---~lvGivt~~dll~~---------- 197 (286)
T 2oux_A 134 YEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ---EN---HLVGVISLRDLIVN---------- 197 (286)
T ss_dssp SCTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT---TC---BEEEEEEHHHHTTS----------
T ss_pred CChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcC---CC---eEEEEEEHHHHHcC----------
Confidence 556667789999999999999999999999987 8899999975 45 89999999998761
Q ss_pred CcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103 253 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 329 (413)
Q Consensus 253 ~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~ 329 (413)
... ..++++|.++++++.+++++.+|+++|.+++++++||||++|+++|+||..|++..+..
T Consensus 198 ---~~~------------~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~ 259 (286)
T 2oux_A 198 ---DDD------------TLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDD 259 (286)
T ss_dssp ---CTT------------SBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred ---CCC------------CcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence 011 24556688899999999999999999999999999999999999999999999997653
No 96
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.52 E-value=1.1e-13 Score=127.70 Aligned_cols=142 Identities=12% Similarity=0.130 Sum_probs=104.3
Q ss_pred CCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCC---------
Q 015103 182 GNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS--------- 252 (413)
Q Consensus 182 ~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~--------- 252 (413)
.++++|.++++++.+++++.+|+++|.+++++++||+++ .+.+ +++|+||.+||++++.........
T Consensus 14 ~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~-~~~~---~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~ 89 (250)
T 2d4z_A 14 QVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-PDTN---TLLGSIDRTEVEGLLQRRISAYRRQPAAAAEAD 89 (250)
T ss_dssp BTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBC
T ss_pred ChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEec-CCCC---eEEEEEEHHHHHHHHHHhhhhhhhhhhhhhccc
Confidence 356789999999999999999999999999999999964 2234 799999999999987644210000
Q ss_pred ------------------Cccccccc--------------------------------------------------ccc-
Q 015103 253 ------------------SLPILQQP--------------------------------------------------VSS- 263 (413)
Q Consensus 253 ------------------~~~~~~~~--------------------------------------------------i~~- 263 (413)
...+.... ...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (250)
T 2d4z_A 90 EEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEE 169 (250)
T ss_dssp CC---------------------------------------------------------------------------CCS
T ss_pred ccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCccccc
Confidence 00000000 000
Q ss_pred -cc---cccc-----cccc--c-ccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 264 -IQ---LGTW-----VPRI--G-EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 264 -l~---i~~~-----~~~v--~-~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
+. +..| ...+ . .+|.+.++++.+++++.+|..+|...|++++||++ .|+++|+||+.||++++.
T Consensus 170 ~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~ 245 (250)
T 2d4z_A 170 MLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE 245 (250)
T ss_dssp CCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred ccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence 00 0001 0122 2 35888899999999999999999999999999997 799999999999999765
No 97
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.52 E-value=4.1e-14 Score=144.79 Aligned_cols=123 Identities=19% Similarity=0.235 Sum_probs=104.3
Q ss_pred ccccccCCCCceEecCC-CCHHHHHHHHHhCCCCEEEEEc-CCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103 271 PRIGEANGRPFAMLRPT-ASLGSALALLVQADVSSIPIVD-DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 348 (413)
Q Consensus 271 ~~v~~~m~~~~~~v~~~-~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~ 348 (413)
.+++++|.++++++.++ +++.+|+++|.+++++++||+| ++|+++|+||.+||++.+..+... .+.++.+
T Consensus 384 ~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~----~~~~V~~---- 455 (527)
T 3pc3_A 384 LAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQ----QSDPAIK---- 455 (527)
T ss_dssp SBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCC----TTSBGGG----
T ss_pred CcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCc----CCCcHHH----
Confidence 47889999999999999 9999999999999999999999 789999999999999865432111 1234544
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCC---CCeEEEEEehHHHHHHhhc
Q 015103 349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG---SKRVEGIISLSDVFRFLLG 412 (413)
Q Consensus 349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~---~~~liGvIS~~DIl~~l~~ 412 (413)
+|.++++++.+++++.+++++|.++++ +||||++ +|+++||||+.||++++..
T Consensus 456 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~ 511 (527)
T 3pc3_A 456 ---------ALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAA 511 (527)
T ss_dssp ---------GEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHT
T ss_pred ---------HhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHh
Confidence 777889999999999999999987775 7999931 3899999999999999864
No 98
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.52 E-value=1.4e-13 Score=138.78 Aligned_cols=121 Identities=17% Similarity=0.246 Sum_probs=105.4
Q ss_pred ccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhC-----CccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCC
Q 015103 178 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS 252 (413)
Q Consensus 178 ~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~-----~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~ 252 (413)
+....++++|.++++++++++++.+|++.|.++ +++++||+|+ ++ +++|++|.+|++..
T Consensus 152 ~~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~---~~---~lvGiVt~~Dll~~---------- 215 (473)
T 2zy9_A 152 YEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KG---RLKGVLSLRDLIVA---------- 215 (473)
T ss_dssp SCTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECT---TS---BEEEEEEHHHHHHS----------
T ss_pred CCCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECC---CC---cEEEEEEHHHHhcC----------
Confidence 667788999999999999999999999999986 5899999975 35 89999999999861
Q ss_pred CcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103 253 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 329 (413)
Q Consensus 253 ~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~ 329 (413)
..+ ..++++|.++++++++++++.++++.|.+++...+||+|++|+++|++|.+|++....+
T Consensus 216 ---~~~------------~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~ 277 (473)
T 2zy9_A 216 ---DPR------------TRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA 277 (473)
T ss_dssp ---CTT------------SBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred ---CCC------------CcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHH
Confidence 011 23556688899999999999999999999999999999999999999999999986653
No 99
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.51 E-value=2.1e-14 Score=123.21 Aligned_cols=121 Identities=9% Similarity=0.104 Sum_probs=98.4
Q ss_pred CCCC--CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103 186 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 263 (413)
Q Consensus 186 ~~~~--~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~ 263 (413)
+|.+ +++++.+++++.+|++.|.+++++.+||+|+ +| +++|++|.+|+++++...... ....
T Consensus 19 im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~~---~lvGivt~~dl~~~~~~~~~~----------~~~~ 82 (159)
T 1yav_A 19 FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP---SY---RLHGLIGTNMIMNSIFGLERI----------EFEK 82 (159)
T ss_dssp HSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT---TC---BEEEEEEHHHHHHHHBCSSSB----------CGGG
T ss_pred HhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECC---CC---CEEEEeEHHHHHHHhhhhccc----------chhh
Confidence 4655 7899999999999999999999999999975 45 899999999999866431100 0000
Q ss_pred cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
.....++++|.+++.++.+++++.+|+++|.++++ +||+|++|+++|++|.+|++..+.
T Consensus 83 ----~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~ 141 (159)
T 1yav_A 83 ----LDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELN 141 (159)
T ss_dssp ----TTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHH
T ss_pred ----hccCCHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHH
Confidence 01124667788899999999999999999998876 999998899999999999998665
No 100
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.51 E-value=1.2e-13 Score=118.19 Aligned_cols=116 Identities=13% Similarity=0.237 Sum_probs=98.1
Q ss_pred CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 268 (413)
Q Consensus 189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 268 (413)
++++++.+++++.+|++.|.+++++.+||.+ +| +++|++|.+|+++++...... .
T Consensus 21 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~----~~---~~~Givt~~dl~~~~~~~~~~------~------------ 75 (157)
T 4fry_A 21 RTIYTVTKNDFVYDAIKLMAEKGIGALLVVD----GD---DIAGIVTERDYARKVVLQERS------S------------ 75 (157)
T ss_dssp CCCCEEETTSBHHHHHHHHHHHTCSEEEEES----SS---SEEEEEEHHHHHHHSGGGTCC------S------------
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCCEEEEee----CC---EEEEEEEHHHHHHHHHhccCC------c------------
Confidence 6789999999999999999999999999963 35 899999999999866432211 0
Q ss_pred ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhh
Q 015103 269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK 330 (413)
Q Consensus 269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~ 330 (413)
....++++|.+++.++.+++++.+|+++|.+++++.+||+| +|+++|++|..|++..+...
T Consensus 76 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~ 136 (157)
T 4fry_A 76 KATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIAD 136 (157)
T ss_dssp SSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTT
T ss_pred cccCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence 11245666888999999999999999999999999999999 79999999999999976643
No 101
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.51 E-value=4.9e-14 Score=121.16 Aligned_cols=123 Identities=12% Similarity=0.124 Sum_probs=96.9
Q ss_pred CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccc
Q 015103 186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 265 (413)
Q Consensus 186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~ 265 (413)
+|.++++++.+++++.+|++.|.+++++++||+|+ .++| +++|++|.+|+++++....... .....
T Consensus 18 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~-~~~~---~~~Givt~~dl~~~~~~~~~~~---~~~~~------- 83 (164)
T 2pfi_A 18 FMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVES-TESQ---ILVGIVQRAQLVQALQAEPPSR---APGHQ------- 83 (164)
T ss_dssp HCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHC----------CCC-------
T ss_pred HcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEec-CCCC---EEEEEEEHHHHHHHHHhhcccc---CCccc-------
Confidence 57788999999999999999999999999999963 1245 8999999999998764321110 00011
Q ss_pred cccccccccccCCCC------ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 266 LGTWVPRIGEANGRP------FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 266 i~~~~~~v~~~m~~~------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
..+.++|..+ +.++.+++++.+|+++|.+++.+++||+| +|+++|++|.+|++..+.
T Consensus 84 -----~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~ 146 (164)
T 2pfi_A 84 -----QCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAIS 146 (164)
T ss_dssp -----CBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred -----chhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence 1233445444 78899999999999999999999999999 799999999999998665
No 102
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.50 E-value=5.3e-14 Score=123.47 Aligned_cols=138 Identities=9% Similarity=0.110 Sum_probs=101.7
Q ss_pred CCCCC----cEEe--CCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCC----cc
Q 015103 186 PCPRP----LVQA--GPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS----LP 255 (413)
Q Consensus 186 ~~~~~----~v~v--~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~----~~ 255 (413)
+|.+. ++++ .+++++.+|+++|.+++++.+||+++ .++| +++|++|.+|+++++.......... ..
T Consensus 16 im~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~-d~~~---~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~ 91 (185)
T 2j9l_A 16 VMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVS-RESQ---RLVGFVLRRDLIISIENARKKQDGVVSTSII 91 (185)
T ss_dssp HSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHTSCSCCCTTCEE
T ss_pred HhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEE-CCCC---eEEEEEEHHHHHHHHHhhcccCCCcccccee
Confidence 45554 7788 99999999999999999999999931 1255 8999999999999876532110000 00
Q ss_pred cccccccccc-cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 256 ILQQPVSSIQ-LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 256 ~~~~~i~~l~-i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
.+........ .......++++|.+++.++.+++++.+|+++|.+++.+.+||+| +|+++|+||..|+++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~ 164 (185)
T 2j9l_A 92 YFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIA 164 (185)
T ss_dssp ECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred ecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence 0000000000 00112357788988999999999999999999999999999999 899999999999999665
No 103
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.49 E-value=8.1e-14 Score=140.46 Aligned_cols=116 Identities=18% Similarity=0.273 Sum_probs=102.4
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHH
Q 015103 272 RIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL 346 (413)
Q Consensus 272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l 346 (413)
+++++|.++++++++++++.+|++.|.++ +++++||+|++++++|++|.+|++... .+.++++
T Consensus 156 ~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~~----------~~~~v~d-- 223 (473)
T 2zy9_A 156 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD----------PRTRVAE-- 223 (473)
T ss_dssp BSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHSC----------TTSBGGG--
T ss_pred CHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcCC----------CCCcHHH--
Confidence 56777999999999999999999999986 579999999889999999999997621 1245554
Q ss_pred hcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 347 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 347 ~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
+|.++++++++++++.+|++.|.+++.+.+|||| ++|+++|+||..|+++.+.
T Consensus 224 -----------im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVD-e~g~lvGiIT~~Dil~~i~ 276 (473)
T 2zy9_A 224 -----------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD-EEGRLVGIVTVDDVLDVLE 276 (473)
T ss_dssp -----------TSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred -----------HhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEc-CCCEEEEEEehHhhHHHHH
Confidence 7777899999999999999999999999999999 5899999999999998864
No 104
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.44 E-value=3.7e-14 Score=148.02 Aligned_cols=139 Identities=16% Similarity=0.074 Sum_probs=103.2
Q ss_pred ccccccCC--CCceEecCCCCHHHHHHHHH-hCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhh-hhcc---------c
Q 015103 271 PRIGEANG--RPFAMLRPTASLGSALALLV-QADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQIH---------L 337 (413)
Q Consensus 271 ~~v~~~m~--~~~~~v~~~~~l~~a~~~m~-~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~-~~~~---------l 337 (413)
.+++++|+ +++.++++++++.++.+.|. +++++.+||+|++++++|++|++|+.+....... .... .
T Consensus 453 ~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~ 532 (632)
T 3org_A 453 MTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLL 532 (632)
T ss_dssp SBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC-----------------
T ss_pred CcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhcccccccccceecc
Confidence 46889999 89999999999999999999 7999999999989999999999999886543210 0000 0
Q ss_pred Cccc----HHHHHhcC---------------CCCCCCcc-cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeE
Q 015103 338 DEMN----IHQALQLG---------------QDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRV 397 (413)
Q Consensus 338 ~~~~----v~~~l~~~---------------~~~~~~~~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~l 397 (413)
.... ++...... ..+..+++ +|++++.++++++++.++++.|.+++++++||+| +|++
T Consensus 533 ~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve--~G~l 610 (632)
T 3org_A 533 DAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTE--RGKL 610 (632)
T ss_dssp --------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEE--TTEE
T ss_pred CHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEEE--CCEE
Confidence 0000 00100000 00111233 8999999999999999999999999999999996 6999
Q ss_pred EEEEehHHHHHHhh
Q 015103 398 EGIISLSDVFRFLL 411 (413)
Q Consensus 398 iGvIS~~DIl~~l~ 411 (413)
+|+||++||++++.
T Consensus 611 vGIVT~~Dll~~~~ 624 (632)
T 3org_A 611 VGIVEREDVAYGYS 624 (632)
T ss_dssp EEEEEGGGTEECCC
T ss_pred EEEEehhhHHHHHh
Confidence 99999999987654
No 105
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.43 E-value=7.5e-13 Score=134.26 Aligned_cols=114 Identities=16% Similarity=0.269 Sum_probs=100.4
Q ss_pred ccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCC
Q 015103 275 EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 352 (413)
Q Consensus 275 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~ 352 (413)
+.|..+++++.+++++.+++++|.+++++++||+|+ +++++|++|.+|+... . . .+.++.+
T Consensus 117 ~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~---~---~---~~~~V~~-------- 179 (511)
T 3usb_A 117 SGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI---Q---D---YSIKISD-------- 179 (511)
T ss_dssp SCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC---C---C---SSSBHHH--------
T ss_pred cccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh---c---c---CCCcHHH--------
Confidence 447778899999999999999999999999999998 8999999999999641 1 0 1356766
Q ss_pred CCCcccCCC-cceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 353 NPSLGFNGQ-RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 353 ~~~~~~m~~-~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
+|.+ +++++++++++.++++.|.+++++.+|||| ++|+++|+||+.||++.+.
T Consensus 180 -----vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVD-e~g~l~GiIT~~Dil~~~~ 233 (511)
T 3usb_A 180 -----VMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVD-NNGVLQGLITIKDIEKVIE 233 (511)
T ss_dssp -----HCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred -----hcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEe-CCCCEeeeccHHHHHHhhh
Confidence 6666 889999999999999999999999999999 6899999999999999863
No 106
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.36 E-value=1.2e-11 Score=125.43 Aligned_cols=115 Identities=13% Similarity=0.196 Sum_probs=98.2
Q ss_pred CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccc
Q 015103 186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 265 (413)
Q Consensus 186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~ 265 (413)
.|..+++++.+++|+.+|+++|.+++++++||+++. .++ +++|++|.+|++. . ....
T Consensus 118 ~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g-~~~---~lvGiVt~rDl~~------~------~~~~------- 174 (511)
T 3usb_A 118 GVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNL-DER---KLVGIITNRDMRF------I------QDYS------- 174 (511)
T ss_dssp CSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCT-TTC---BEEEEEEHHHHTT------C------CCSS-------
T ss_pred ccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecC-CCC---EEEEEEEehHhhh------h------ccCC-------
Confidence 577889999999999999999999999999999631 134 8999999999853 0 1111
Q ss_pred cccccccccccCCC-CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 266 LGTWVPRIGEANGR-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 266 i~~~~~~v~~~m~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
..++++|++ +++++++++++.+++++|.+++++.+||||++|+++|++|..|+++...
T Consensus 175 -----~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~ 233 (511)
T 3usb_A 175 -----IKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIE 233 (511)
T ss_dssp -----SBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred -----CcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhh
Confidence 235566887 8999999999999999999999999999999999999999999999765
No 107
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.36 E-value=4.2e-12 Score=128.85 Aligned_cols=115 Identities=19% Similarity=0.288 Sum_probs=100.6
Q ss_pred cccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEc--CCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103 274 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 351 (413)
Q Consensus 274 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~ 351 (413)
+++|.+++.++.+++++.++++.|.+++++.+||+| ++++++|++|.+|++... . .+.++.+
T Consensus 93 ~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~------~---~~~~v~~------- 156 (491)
T 1zfj_A 93 ENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS------D---YNAPISE------- 156 (491)
T ss_dssp TTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS------C---SSSBTTT-------
T ss_pred HhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc------c---CCCcHHH-------
Confidence 455888899999999999999999999999999999 789999999999997531 0 1234433
Q ss_pred CCCCcccCCC-cceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 352 ANPSLGFNGQ-RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 352 ~~~~~~~m~~-~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
+|.+ +++++++++++.++++.|.+++++++|||| ++|+++|+||+.||++.+.
T Consensus 157 ------im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd-~~g~lvGivt~~Dil~~~~ 210 (491)
T 1zfj_A 157 ------HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVD-NSGRLSGLITIKDIEKVIE 210 (491)
T ss_dssp ------SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred ------HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEHHHHHHHHh
Confidence 7777 889999999999999999999999999999 6899999999999999875
No 108
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.34 E-value=1.9e-12 Score=132.48 Aligned_cols=122 Identities=13% Similarity=0.133 Sum_probs=101.6
Q ss_pred CCCCCCCCCcEEeCCC-CCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccc
Q 015103 182 GNGRPCPRPLVQAGPY-DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 260 (413)
Q Consensus 182 ~~~~~~~~~~v~v~~~-~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~ 260 (413)
.++++|.++++++.++ +++.+|+++|.+++++++||+|. +++ +++|+||.+||++.+...... ..
T Consensus 385 ~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~--~~g---~lvGiVt~~Dll~~l~~~~~~-------~~-- 450 (527)
T 3pc3_A 385 AIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQ--DDG---SVLGVVGQETLITQIVSMNRQ-------QS-- 450 (527)
T ss_dssp BGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECT--TTC---CEEEEEEHHHHHHHHHHHCCC-------TT--
T ss_pred cHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEEC--CCC---EEEEEEEHHHHHHHHHhccCc-------CC--
Confidence 3567899999999999 99999999999999999999961 145 899999999999977643111 11
Q ss_pred ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC----CcEEEEEeHHHHHHHHhh
Q 015103 261 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN----DSLLDIYSRSDITALAKD 329 (413)
Q Consensus 261 i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~----g~lvGiit~~dl~~~~~~ 329 (413)
..++++|.++++++.+++++.+++++|.++++ +||||++ |+++|+||+.||++.+.+
T Consensus 451 ----------~~V~~im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~ 511 (527)
T 3pc3_A 451 ----------DPAIKALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAA 511 (527)
T ss_dssp ----------SBGGGGEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHT
T ss_pred ----------CcHHHHhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHh
Confidence 24556688999999999999999999977664 7999974 899999999999997764
No 109
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.34 E-value=4.9e-13 Score=135.16 Aligned_cols=114 Identities=15% Similarity=0.270 Sum_probs=85.6
Q ss_pred cccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCC
Q 015103 274 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN 353 (413)
Q Consensus 274 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~ 353 (413)
++.|..+++++.+++++.+++++|.+++++.+||+|++++++|+||.+|+.... . .+.++.+
T Consensus 92 ~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~~------~---~~~~v~d--------- 153 (496)
T 4fxs_A 92 EAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFVT------D---LTKSVAA--------- 153 (496)
T ss_dssp CC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTCC------C---TTSBGGG---------
T ss_pred ccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhcc------c---CCCcHHH---------
Confidence 345778899999999999999999999999999999899999999999986210 0 1234444
Q ss_pred CCcccCC-C-cceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103 354 PSLGFNG-Q-RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 410 (413)
Q Consensus 354 ~~~~~m~-~-~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l 410 (413)
+|. + +++++++++++.++++.|.+++++.+|||| ++|+++|+||+.||++..
T Consensus 154 ----iM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD-e~G~l~GiIT~~DIl~~~ 207 (496)
T 4fxs_A 154 ----VMTPKERLATVKEGATGAEVQEKMHKARVEKILVVN-DEFQLKGMITAKDFHKAE 207 (496)
T ss_dssp ----TSEEGGGCCEEECC----CGGGTCC---CCCEEEEC-TTSBCCEEECCC-----C
T ss_pred ----HhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCCEEEeehHhHHHHhh
Confidence 666 3 589999999999999999999999999999 699999999999999864
No 110
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.30 E-value=2.1e-13 Score=138.35 Aligned_cols=113 Identities=14% Similarity=0.167 Sum_probs=0.0
Q ss_pred CCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCC
Q 015103 277 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN 353 (413)
Q Consensus 277 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~ 353 (413)
|.++++++.+++++.+++++|.+++++++||+|++ ++++|+||.+|++.. . . . .+.++.+
T Consensus 103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~-~-~---~---~~~~V~d--------- 165 (503)
T 1me8_A 103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID-L-T---Q---TETKVSD--------- 165 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh-h-c---c---ccCcHHH---------
Confidence 67788999999999999999999999999999976 899999999999863 1 0 0 1234444
Q ss_pred CCcccCCCc--ceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 354 PSLGFNGQR--CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 354 ~~~~~m~~~--~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
+|.++ ++++++++++.+|+++|.+++++.+|||| ++|+++|+||+.||++.+.
T Consensus 166 ----iM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVD-e~g~lvGiIT~~Dil~~~~ 220 (503)
T 1me8_A 166 ----MMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIID-DDQHLRYIVFRKDYDRSQV 220 (503)
T ss_dssp ------------------------------------------------------------
T ss_pred ----HhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEecHHHHhhh
Confidence 66666 89999999999999999999999999999 5899999999999999874
No 111
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.28 E-value=3.2e-13 Score=137.12 Aligned_cols=116 Identities=16% Similarity=0.285 Sum_probs=5.2
Q ss_pred ccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCC
Q 015103 273 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 352 (413)
Q Consensus 273 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~ 352 (413)
++++|.++++++.+++++.+|+++|.+++++.+||+|++++++|+||.+|+..... .+.++.+
T Consensus 97 ~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~~---------~~~~v~~-------- 159 (494)
T 1vrd_A 97 TENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEKN---------LSKKIKD-------- 159 (494)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred HhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhcC---------CCCcHHH--------
Confidence 34558888999999999999999999999999999998899999999999986210 0234444
Q ss_pred CCCcccCCC--cceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 353 NPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 353 ~~~~~~m~~--~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
+|.+ +++++.+++++.++++.|.+++++.+|||| ++|+++|+||+.||++.+.
T Consensus 160 -----im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd-~~g~lvGiIt~~Dll~~~~ 214 (494)
T 1vrd_A 160 -----LMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVS-KDNKLVGLITIKDIMSVIE 214 (494)
T ss_dssp -------------------------------------------------------CHHHHT
T ss_pred -----HhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHHhhhc
Confidence 6666 889999999999999999999999999999 5899999999999999864
No 112
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.26 E-value=5e-13 Score=134.99 Aligned_cols=114 Identities=14% Similarity=0.264 Sum_probs=1.3
Q ss_pred ccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCC
Q 015103 273 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 352 (413)
Q Consensus 273 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~ 352 (413)
+++.|..+++++.+++++.+++++|.+++++.+||+| +++++|++|.+|+..... .+.++.+
T Consensus 90 ~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~~~---------~~~~V~~-------- 151 (490)
T 4avf_A 90 HETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRVKPN---------AGDTVAA-------- 151 (490)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred cccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhccc---------cCCcHHH--------
Confidence 3455777889999999999999999999999999999 899999999999863211 0234554
Q ss_pred CCCcccCC-C-cceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103 353 NPSLGFNG-Q-RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 410 (413)
Q Consensus 353 ~~~~~~m~-~-~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l 410 (413)
+|. + +++++++++++.+++++|.+++++.+|||| ++|+++|+||+.||++.+
T Consensus 152 -----vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD-e~g~lvGiIT~~Dil~~~ 205 (490)
T 4avf_A 152 -----IMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVD-ENFYLRGLVTFRDIEKAK 205 (490)
T ss_dssp ------------------------------------------------------------
T ss_pred -----HhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEehHHhhhhc
Confidence 666 3 689999999999999999999999999999 689999999999999874
No 113
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.25 E-value=7.5e-13 Score=134.33 Aligned_cols=165 Identities=14% Similarity=0.126 Sum_probs=21.6
Q ss_pred CCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccc
Q 015103 187 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 266 (413)
Q Consensus 187 ~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i 266 (413)
|.++++++.+++|+.+|+++|.+++++++||+|++...+ +++|++|.+|++.. . ....
T Consensus 103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g---~lvGiVt~~Dl~~~--~---------~~~~-------- 160 (503)
T 1me8_A 103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHG---VLLGLVTQRDYPID--L---------TQTE-------- 160 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCC---eEEEEEEHHHHHhh--h---------cccc--------
Confidence 778999999999999999999999999999996511115 89999999999752 0 0011
Q ss_pred ccccccccccCCCC--ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHH
Q 015103 267 GTWVPRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ 344 (413)
Q Consensus 267 ~~~~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~ 344 (413)
..++++|.++ ++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|+++......... + ...
T Consensus 161 ----~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~~~~~----d-~~~- 230 (503)
T 1me8_A 161 ----TKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHNELV----D-SQK- 230 (503)
T ss_dssp -----------------------------------------------------------------CCCCB----C-TTS-
T ss_pred ----CcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcccchh----c-ccc-
Confidence 2455668877 999999999999999999999999999999999999999999998654221100 0 000
Q ss_pred HHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEE
Q 015103 345 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEG 399 (413)
Q Consensus 345 ~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liG 399 (413)
. ++. ...+.. ....+.++.|.+.+++.+ ++|..+|...|
T Consensus 231 ----------~--l~v--~a~v~~-~~~~e~~~~l~e~gv~~l-~Vd~~~g~~~~ 269 (503)
T 1me8_A 231 ----------R--YLV--GAGINT-RDFRERVPALVEAGADVL-CIDSSDGFSEW 269 (503)
T ss_dssp ----------C--BCC--EEEECS-SSHHHHHHHHHHHTCSEE-EECCSCCCSHH
T ss_pred ----------c--ccc--ccccCc-hhHHHHHHHHHhhhccce-EEecccCcccc
Confidence 0 111 123344 666677888888899865 44322344333
No 114
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.24 E-value=1.7e-12 Score=128.69 Aligned_cols=162 Identities=19% Similarity=0.168 Sum_probs=21.6
Q ss_pred eeeceeCCCCeEEEEeehHHHHHHHHHhccC---CCCCCHHHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCC
Q 015103 120 MVPLWDDFKGRFVGVLSALDFILILRELGTN---GSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGP 196 (413)
Q Consensus 120 s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~---~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~ 196 (413)
.+|++.+.=. -+|..++.-.+.+.+.- ..+++.++-. ...+..++..+ .|..+++++.|
T Consensus 92 ~iPlvSA~MD----TVTe~~MAIamAr~GGiGvIH~n~sie~Qa----~~V~~VKr~e~----------g~i~dPvtl~P 153 (556)
T 4af0_A 92 NTPFLSSPMD----TVTEDRMAIALALHGGLGIIHHNCSAEEQA----AMVRRVKKYEN----------GFITDPLCLGP 153 (556)
T ss_dssp SSCEEECCCT----TTCSHHHHHHHHHTTCEEEECCSSCHHHHH----HHHHHHHHCCC---------------------
T ss_pred CCCEEecCcc----cccCHHHHHHHHHCCCeEEEcCCCCHHHHH----HHHHHHHhccc----------CccCCCeEcCC
Confidence 3688765422 24556666666655421 1455544421 22233333222 35677899999
Q ss_pred CCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccccccccccc
Q 015103 197 YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEA 276 (413)
Q Consensus 197 ~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~ 276 (413)
+.|+.||+++|.+++++.+||+++...++ +++||+|.+|+.- - .... .++++
T Consensus 154 ~~Tv~da~~l~~~~~isgvpVvd~g~~~~---kLvGIvT~RD~rf-~------------d~~~------------~V~ev 205 (556)
T 4af0_A 154 DATVGDVLEIKAKFGFCGVPITETGEPDS---KLLGIVTGRDVQF-Q------------DAET------------PIKSV 205 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHhCCCccccccccCcCC---EEEEEEecccccc-c------------ccce------------Ehhhh
Confidence 99999999999999999999997533345 8999999999732 0 1122 35566
Q ss_pred CCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103 277 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 327 (413)
Q Consensus 277 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~ 327 (413)
|+++++++....++.+|.++|.++++..+||||++|+++|+||+.|+.+..
T Consensus 206 MT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~ 256 (556)
T 4af0_A 206 MTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQ 256 (556)
T ss_dssp ---------------------------------------------------
T ss_pred cccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhh
Confidence 999999999999999999999999999999999999999999999998744
No 115
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.23 E-value=2.8e-12 Score=133.82 Aligned_cols=137 Identities=12% Similarity=0.049 Sum_probs=99.6
Q ss_pred CCCCCC--CCcEEeCCCCCHHHHHHHHH-hCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCC------
Q 015103 183 NGRPCP--RPLVQAGPYDSLKEVALKIL-QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS------ 253 (413)
Q Consensus 183 ~~~~~~--~~~v~v~~~~sl~ea~~~m~-~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~------ 253 (413)
++++|. ++++++++++++.|+.+.|. +++++++||+|+ ++ +++|++|.+|+++.+..........
T Consensus 455 V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~---~~---~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~ 528 (632)
T 3org_A 455 AREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA---NG---YLLGAISRKEIVDRLQHVLEDVPEPIAGHRT 528 (632)
T ss_dssp HHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCT---TC---BBCCEESHHHHTTTTTTC-------------
T ss_pred HHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEec---CC---eEEEEEEHHHHHHHHHHHhhhcccccccccc
Confidence 456788 89999999999999999999 799999999975 45 8999999999998664331110000
Q ss_pred -----cccccccccccc-----------------cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC
Q 015103 254 -----LPILQQPVSSIQ-----------------LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN 311 (413)
Q Consensus 254 -----~~~~~~~i~~l~-----------------i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 311 (413)
...+.+.+..+. +-....+++++|+++++++++++++.+|+++|.+++++.+||+ ++
T Consensus 529 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~ 607 (632)
T 3org_A 529 LVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ER 607 (632)
T ss_dssp ------------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ET
T ss_pred eeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-EC
Confidence 000000011100 0011124788999999999999999999999999999999999 68
Q ss_pred CcEEEEEeHHHHHHH
Q 015103 312 DSLLDIYSRSDITAL 326 (413)
Q Consensus 312 g~lvGiit~~dl~~~ 326 (413)
|+++|+||++|+++.
T Consensus 608 G~lvGIVT~~Dll~~ 622 (632)
T 3org_A 608 GKLVGIVEREDVAYG 622 (632)
T ss_dssp TEEEEEEEGGGTEEC
T ss_pred CEEEEEEehhhHHHH
Confidence 999999999999764
No 116
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.22 E-value=1.1e-10 Score=118.50 Aligned_cols=115 Identities=15% Similarity=0.186 Sum_probs=99.0
Q ss_pred CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccc
Q 015103 186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 265 (413)
Q Consensus 186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~ 265 (413)
+|..+++++.+++++.+|+++|.+++++++||++. .+++ +++|++|.+|++.. ....
T Consensus 95 im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~~---~lvGivt~~Dl~~~------------~~~~------- 151 (491)
T 1zfj_A 95 GVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVET-LANR---KLVGIITNRDMRFI------------SDYN------- 151 (491)
T ss_dssp TTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC-TTTC---BEEEEEEHHHHHHC------------SCSS-------
T ss_pred cCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEe-CCCC---EEEEEEEHHHHhhh------------ccCC-------
Confidence 68889999999999999999999999999999961 0145 89999999999862 0011
Q ss_pred cccccccccccCCC-CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 266 LGTWVPRIGEANGR-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 266 i~~~~~~v~~~m~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
..++++|.+ +++++.+++++.+++++|.+++++.+||+|++|+++|++|..|+++...
T Consensus 152 -----~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~ 210 (491)
T 1zfj_A 152 -----APISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE 210 (491)
T ss_dssp -----SBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred -----CcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHh
Confidence 245566887 8899999999999999999999999999999999999999999999765
No 117
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.21 E-value=1.2e-12 Score=129.68 Aligned_cols=109 Identities=20% Similarity=0.252 Sum_probs=0.0
Q ss_pred CCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCC
Q 015103 277 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN 353 (413)
Q Consensus 277 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~ 353 (413)
|..+++++.|+.++.+|+++|.+++++.+||+++ +++|+|++|.+|+... .. +.++++
T Consensus 144 ~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~---d~-------~~~V~e--------- 204 (556)
T 4af0_A 144 FITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ---DA-------ETPIKS--------- 204 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc---cc-------ceEhhh---------
Confidence 4557889999999999999999999999999986 6799999999998541 11 234555
Q ss_pred CCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 354 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 354 ~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
+|++++++++.+.++.+|.++|.++++..||||| ++++++|+||+.|+++.
T Consensus 205 ----vMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd-~~g~LvGlIT~kDi~k~ 255 (556)
T 4af0_A 205 ----VMTTEVVTGSSPITLEKANSLLRETKKGKLPIVD-SNGHLVSLVARSDLLKN 255 (556)
T ss_dssp --------------------------------------------------------
T ss_pred ----hcccceEEecCCCCHHHHHHHHHHccccceeEEc-cCCcEEEEEEechhhhh
Confidence 7888899999999999999999999999999999 69999999999999875
No 118
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.19 E-value=1.2e-11 Score=124.94 Aligned_cols=114 Identities=15% Similarity=0.158 Sum_probs=84.4
Q ss_pred CCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccc
Q 015103 185 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI 264 (413)
Q Consensus 185 ~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l 264 (413)
..|..+++++++++++.+|+++|.+++++++||+|+ ++ +++|+||.+|++. . ....
T Consensus 93 ~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~---~~---~lvGiVt~rDL~~------~------~~~~------ 148 (496)
T 4fxs_A 93 AGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTE---NN---ELVGIITGRDVRF------V------TDLT------ 148 (496)
T ss_dssp C--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECS---SS---BEEEEEEHHHHTT------C------CCTT------
T ss_pred cccccCceEECCCCCHHHHHHHHHHcCCcEEEEEcc---CC---EEEEEEEHHHHhh------c------ccCC------
Confidence 367889999999999999999999999999999975 45 8999999999852 0 1111
Q ss_pred ccccccccccccCC-C-CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 265 QLGTWVPRIGEANG-R-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 265 ~i~~~~~~v~~~m~-~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
..+.++|+ + +++++++++++.+++++|.++++..+||||++|+++|+||..|+++...
T Consensus 149 ------~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~ 208 (496)
T 4fxs_A 149 ------KSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAES 208 (496)
T ss_dssp ------SBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CC
T ss_pred ------CcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhc
Confidence 23455587 3 5889999999999999999999999999999999999999999998543
No 119
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.14 E-value=1.2e-11 Score=125.51 Aligned_cols=114 Identities=18% Similarity=0.290 Sum_probs=4.6
Q ss_pred CCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccc
Q 015103 185 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI 264 (413)
Q Consensus 185 ~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l 264 (413)
++|.++++++.+++++.+|+++|.+++++.+||+|+ ++ +++|++|.+|+++. . ...
T Consensus 99 ~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~---~lvGivt~~Dl~~~--~----------~~~------ 154 (494)
T 1vrd_A 99 NGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDE---EG---RLVGLLTNRDVRFE--K----------NLS------ 154 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcC---CC---EEEEEEEHHHHHhh--c----------CCC------
Confidence 368889999999999999999999999999999975 45 89999999999751 0 011
Q ss_pred ccccccccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 265 QLGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 265 ~i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
..+.++|.+ +++++.+++++.+++++|.++++..+||||++|+++|++|..|+++...
T Consensus 155 ------~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~ 214 (494)
T 1vrd_A 155 ------KKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIE 214 (494)
T ss_dssp ------------------------------------------------------------CHHHHT
T ss_pred ------CcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhc
Confidence 245566887 8999999999999999999999999999999999999999999998664
No 120
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.13 E-value=2.2e-11 Score=122.93 Aligned_cols=113 Identities=17% Similarity=0.199 Sum_probs=0.4
Q ss_pred CCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccc
Q 015103 185 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI 264 (413)
Q Consensus 185 ~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l 264 (413)
..|..+++++++++++.+|+++|.+++++++||+| ++ +++|++|.+|+... ....
T Consensus 92 ~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd----~g---~lvGIVt~rDl~~~------------~~~~------ 146 (490)
T 4avf_A 92 TAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE----QG---ELVGIVTGRDLRVK------------PNAG------ 146 (490)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred cCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE----CC---EEEEEEEhHHhhhc------------cccC------
Confidence 36778899999999999999999999999999996 24 89999999998531 0111
Q ss_pred ccccccccccccCC-C-CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 265 QLGTWVPRIGEANG-R-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 265 ~i~~~~~~v~~~m~-~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
..++++|+ + +++++.+++++.+|+++|.++++..+||||++|+++|+||..|+++...
T Consensus 147 ------~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~ 206 (490)
T 4avf_A 147 ------DTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT 206 (490)
T ss_dssp ------------------------------------------------------------------
T ss_pred ------CcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence 23455687 4 6899999999999999999999999999999999999999999998654
No 121
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=99.10 E-value=9.1e-13 Score=134.38 Aligned_cols=117 Identities=20% Similarity=0.233 Sum_probs=68.3
Q ss_pred ccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcC
Q 015103 273 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG 349 (413)
Q Consensus 273 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~ 349 (413)
+.++|.++++++.+++++.+|+++|.+++++.+||+|+ +++++|++|.+|+...... ..+.++.+
T Consensus 110 ~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~-------~~~~~v~~----- 177 (514)
T 1jcn_A 110 FEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEK-------DHTTLLSE----- 177 (514)
T ss_dssp CCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC-------------------------
T ss_pred hhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhc-------cCCCCHHH-----
Confidence 44568788899999999999999999999999999997 5899999999998763210 01234444
Q ss_pred CCCCCCcccCCC--cceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103 350 QDANPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 410 (413)
Q Consensus 350 ~~~~~~~~~m~~--~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l 410 (413)
+|.+ +++++.+++++.++++.|.+++.+.+|||| ++|+++|+||++||++++
T Consensus 178 --------vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd-~~g~lvGiIt~~Dll~~~ 231 (514)
T 1jcn_A 178 --------VMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVN-DCDELVAIIARTDLKKNR 231 (514)
T ss_dssp -----------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEES-SSSCCC----CCCCSSCC
T ss_pred --------HhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEEC-CCCeEEEEEEHHHHHHHh
Confidence 6666 789999999999999999999999999999 589999999999998765
No 122
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=99.07 E-value=1.3e-11 Score=124.86 Aligned_cols=109 Identities=17% Similarity=0.325 Sum_probs=0.0
Q ss_pred cCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCC
Q 015103 276 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS 355 (413)
Q Consensus 276 ~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~ 355 (413)
.|..++.++.+++++.+++++|.+++++.+||+|+ ++++|+++.+|++. . . +.++.+
T Consensus 98 ~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~--~------~---~~~v~~----------- 154 (486)
T 2cu0_A 98 LIVEDVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA--R------E---GKLVKE----------- 154 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc--C------C---CCCHHH-----------
Confidence 46678899999999999999999999999999997 99999999999875 1 0 234544
Q ss_pred cccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103 356 LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 410 (413)
Q Consensus 356 ~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l 410 (413)
+|.++++++++++++.++++.|.+++++.+|||| ++|+++|+||..||++.+
T Consensus 155 --im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd-e~g~lvGiiT~~Dil~~~ 206 (486)
T 2cu0_A 155 --LMTKEVITVPESIEVEEALKIMIENRIDRLPVVD-ERGKLVGLITMSDLVARK 206 (486)
T ss_dssp -------------------------------------------------------
T ss_pred --HccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEe-cCCeEEEEEEHHHHHHhh
Confidence 5666788999999999999999999999999999 589999999999999875
No 123
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=98.92 E-value=6.4e-11 Score=120.72 Aligned_cols=118 Identities=17% Similarity=0.207 Sum_probs=67.5
Q ss_pred CCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccc
Q 015103 185 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI 264 (413)
Q Consensus 185 ~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l 264 (413)
++|.++++++.+++++.+|+++|.+++++.+||+|++..++ +++|++|.+|+..... ...
T Consensus 112 ~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~---~lvGiVt~~Dl~~~~~----------~~~------- 171 (514)
T 1jcn_A 112 QGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGS---KLVGIVTSRDIDFLAE----------KDH------- 171 (514)
T ss_dssp TTSCSSCCCCCC-----------------CEESCC-----------CCEECTTTTC------------------------
T ss_pred hccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCC---EEEEEEEHHHHHhhhh----------ccC-------
Confidence 46888899999999999999999999999999996411125 8999999999865210 001
Q ss_pred ccccccccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103 265 QLGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 327 (413)
Q Consensus 265 ~i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~ 327 (413)
...+.++|.+ +++++.+++++.+++++|.++++..+||||++|+++|++|++|+++..
T Consensus 172 -----~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~ 231 (514)
T 1jcn_A 172 -----TTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR 231 (514)
T ss_dssp --------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred -----CCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence 1245566887 899999999999999999999999999999999999999999988744
No 124
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=98.92 E-value=1.6e-10 Score=116.97 Aligned_cols=161 Identities=16% Similarity=0.252 Sum_probs=22.3
Q ss_pred CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccc
Q 015103 186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 265 (413)
Q Consensus 186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~ 265 (413)
.|..+++++.+++++.+++++|.+++++++||+++ + +++|+++.+|++. . ..
T Consensus 98 ~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~----~---~lvGivt~~Dl~~---~-----------~~------- 149 (486)
T 2cu0_A 98 LIVEDVITIAPDETVDFALFLMEKHGIDGLPVVED----E---KVVGIITKKDIAA---R-----------EG------- 149 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC----C---EEEEEEEHHHhcc---C-----------CC-------
Confidence 57788999999999999999999999999999963 4 7999999999864 0 01
Q ss_pred cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHH
Q 015103 266 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA 345 (413)
Q Consensus 266 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~ 345 (413)
..+.++|.++++++.+++++.+++++|.+++++.+||+|++|+++|++|.+|+++...... . ..+
T Consensus 150 -----~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~~~~---~------~~~- 214 (486)
T 2cu0_A 150 -----KLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKKYKN---A------VRD- 214 (486)
T ss_dssp --------------------------------------------------------------CCTT---C------CBC-
T ss_pred -----CCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhhccc---c------ccc-
Confidence 1345558888899999999999999999999999999999999999999999998653210 0 000
Q ss_pred HhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEe
Q 015103 346 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS 402 (413)
Q Consensus 346 l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS 402 (413)
.... ++- -..+...+ .+.+..|...+++.+ |++...|...++++
T Consensus 215 ------~~g~--~~v--~~~~~~~~--~~~a~~l~~~gvd~l-vvdta~G~~~~~L~ 258 (486)
T 2cu0_A 215 ------ENGE--LLV--AAAVSPFD--IKRAIELDKAGVDVI-VVDTAHAHNLKAIK 258 (486)
T ss_dssp ------TTSC--BCC--EEEECTTC--HHHHHHHHHTTCSEE-EEECSCCCCHHHHH
T ss_pred ------cCCc--eee--cceechhh--HHHHHHHHHhcCCce-EEEecCCcEeehhh
Confidence 0000 110 01223333 566778889999875 66633455444443
No 125
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A
Probab=98.88 E-value=1.1e-09 Score=85.29 Aligned_cols=36 Identities=42% Similarity=0.879 Sum_probs=33.5
Q ss_pred CceEEEcCeeeeCCCCCcccCCCCCcceEEEeccCCC
Q 015103 1 MYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPD 37 (413)
Q Consensus 1 ~ykf~vdg~w~~~~~~~~~~~~~g~~~~~~~~~~~~~ 37 (413)
.|||+|||+|++||..|++.|+.|+.||+|.| .++|
T Consensus 57 ~YKf~VdG~~~~DP~~~~~~d~~G~~Nnvi~V-~~~d 92 (96)
T 1z0n_A 57 QYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQV-KKTD 92 (96)
T ss_dssp EEEEEETTEEECCTTSCEEECTTSCEEEEEEE-CSCT
T ss_pred EEEEEECCeEEcCCCCCeEECCCCCEeEEEEE-cCCC
Confidence 49999999999999999999999999999999 6554
No 126
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.86 E-value=3.8e-09 Score=77.25 Aligned_cols=46 Identities=15% Similarity=0.341 Sum_probs=42.5
Q ss_pred ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103 281 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 327 (413)
Q Consensus 281 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~ 327 (413)
++++.+++++.+|+++|.+++++++||+| +|+++|++|.+|+++.+
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~ 47 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKV 47 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHT
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHH
Confidence 57899999999999999999999999998 68999999999998744
No 127
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.83 E-value=7.2e-09 Score=75.73 Aligned_cols=46 Identities=26% Similarity=0.386 Sum_probs=42.1
Q ss_pred cEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHH
Q 015103 191 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 243 (413)
Q Consensus 191 ~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l 243 (413)
++++.|++|+.+|+++|.+++++++||+++ | +++||+|.+||++.+
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~----~---~lvGIvT~~Di~~~~ 47 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG----D---EILGVVTERDILDKV 47 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET----T---EEEEEEEHHHHHHHT
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEEHHHHHHHH
Confidence 689999999999999999999999999964 4 899999999998754
No 128
>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1
Probab=98.70 E-value=7.2e-09 Score=94.71 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=32.6
Q ss_pred CceEEEcCeeeeCCCCCcccCCCCCcceEEEeccCCC
Q 015103 1 MYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPD 37 (413)
Q Consensus 1 ~ykf~vdg~w~~~~~~~~~~~~~g~~~~~~~~~~~~~ 37 (413)
.|||+|||+|++||+.|++.|+.|++||++.| ..+|
T Consensus 54 ~YKFiVDG~w~~Dp~~p~~~d~~G~~nNvi~V-~~~~ 89 (252)
T 2qlv_B 54 RFRFIVDNELRVSDFLPTATDQMGNFVNYIEV-RQPE 89 (252)
T ss_dssp EEEEEETTEEECCTTSCEEBCSSCCCEEEEEE-CC--
T ss_pred EEEEEECCEEEeCCCCCEEecCCCcCcceeec-cCcc
Confidence 49999999999999999999999999999999 7554
No 129
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=98.62 E-value=2.2e-08 Score=94.31 Aligned_cols=33 Identities=33% Similarity=0.682 Sum_probs=31.0
Q ss_pred CceEEEcCeeeeCCCCCcc-cCCCCCcceEEEecc
Q 015103 1 MYKFYVDGEWRHDENQPHV-SGNYGVVNCVYIAVP 34 (413)
Q Consensus 1 ~ykf~vdg~w~~~~~~~~~-~~~~g~~~~~~~~~~ 34 (413)
.|||+|||+|++||+.|.. .|+.|++||++.| .
T Consensus 220 ~YkFiVDG~w~~d~~~~~~~~d~~G~~nn~~~v-~ 253 (294)
T 3nme_A 220 EYKYIIDGEWTHNEAEPFIGPNKDGHTNNYAKV-V 253 (294)
T ss_dssp EEEEEETTEEECCTTSCEECSCTTSCCEEEEEE-C
T ss_pred EEEEEECCEEeeCCCCCeeeECCCCCEeEEEEE-C
Confidence 4999999999999999986 8999999999999 5
No 130
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.59 E-value=7.9e-08 Score=69.71 Aligned_cols=47 Identities=15% Similarity=0.320 Sum_probs=43.7
Q ss_pred ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103 281 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 328 (413)
Q Consensus 281 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~ 328 (413)
+.++.+++++.+|+++|.+++++++||+|+ |+++|++|.+|+++.+.
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~-~~l~Givt~~dl~~~~~ 48 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVTERDILDKVV 48 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHHHHTT
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence 568999999999999999999999999996 99999999999998654
No 131
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.55 E-value=2e-07 Score=67.57 Aligned_cols=47 Identities=17% Similarity=0.361 Sum_probs=44.1
Q ss_pred ceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103 363 CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411 (413)
Q Consensus 363 ~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~ 411 (413)
+.++.+++++.+|++.|.+++++++||+| + |+++|+||.+||++++.
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~~~pV~d-~-~~l~Givt~~dl~~~~~ 48 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-G-DEILGVVTERDILDKVV 48 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEE-T-TEEEEEEEHHHHHHHTT
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHH
Confidence 67899999999999999999999999999 4 99999999999999864
No 132
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=94.22 E-value=0.017 Score=60.67 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=25.9
Q ss_pred CceEEEcCeee--eCCCCCcc---cCCCCCcceEE
Q 015103 1 MYKFYVDGEWR--HDENQPHV---SGNYGVVNCVY 30 (413)
Q Consensus 1 ~ykf~vdg~w~--~~~~~~~~---~~~~g~~~~~~ 30 (413)
.|||+|||+|+ +||+.|.. .|.+|..|++.
T Consensus 68 ~y~f~vdg~~~~~~d~~~~~~~y~~~~~g~~n~~~ 102 (696)
T 4aee_A 68 GYGFQIDNDFENVLDPDNEEKKCVHTSFFPEYKKC 102 (696)
T ss_dssp EEEEEETTCCSCCCCTTCCCEEEEECSSCTTSEEE
T ss_pred EEEEEECCEEeecCCCCCCcccccccCCcccccee
Confidence 39999999999 88988764 58999999985
No 133
>3fil_A Immunoglobulin G-binding protein G; dimerization, beta sheet, alpha helix, improved hydrophobic packing of core residues, protein binding; HET: FME; 0.88A {Streptococcus SP} SCOP: d.15.7.1 PDB: 2qmt_A 2jsv_X 2ju6_X 2k0p_A 2kq4_X 2kwd_A 2lgi_A 2gi9_A 1gb1_A 1pga_A 1pgb_A 2gb1_A 3gb1_A 2klk_A 2rmm_A 2onq_A 2on8_A 2j52_A 2j53_A 3v3x_A* ...
Probab=75.65 E-value=0.65 Score=30.17 Aligned_cols=12 Identities=50% Similarity=1.016 Sum_probs=9.7
Q ss_pred EcCeeeeCCCCC
Q 015103 6 VDGEWRHDENQP 17 (413)
Q Consensus 6 vdg~w~~~~~~~ 17 (413)
|||+|.||+.-.
T Consensus 39 vdgeW~YD~ATk 50 (56)
T 3fil_A 39 VDGEWTYDDATK 50 (56)
T ss_dssp CCCEEEEEGGGT
T ss_pred CccEEEecCcee
Confidence 799999998643
No 134
>1igd_A Protein G; immunoglobulin binding protein; 1.10A {Streptococcus SP} SCOP: d.15.7.1 PDB: 1igc_A 2igd_A 2igh_A 1qkz_A 2igg_A 1uwx_A 3mp9_A
Probab=74.91 E-value=0.8 Score=30.52 Aligned_cols=12 Identities=42% Similarity=0.864 Sum_probs=10.1
Q ss_pred EcCeeeeCCCCC
Q 015103 6 VDGEWRHDENQP 17 (413)
Q Consensus 6 vdg~w~~~~~~~ 17 (413)
|||+|-||+.-.
T Consensus 44 vdgew~yd~atk 55 (61)
T 1igd_A 44 VDGVWTYDDATK 55 (61)
T ss_dssp CCCEEEEETTTT
T ss_pred CCceEeecCcee
Confidence 799999998654
No 135
>1mhx_A Immunoglobulin-binding protein G; alpha-beta protein, redesigned first beta-hairpin, immune SY; 1.80A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1mi0_A
Probab=74.81 E-value=0.82 Score=30.28 Aligned_cols=13 Identities=46% Similarity=0.925 Sum_probs=10.6
Q ss_pred EcCeeeeCCCCCc
Q 015103 6 VDGEWRHDENQPH 18 (413)
Q Consensus 6 vdg~w~~~~~~~~ 18 (413)
|||+|.||+.-.+
T Consensus 48 vdgeWsYD~ATkT 60 (65)
T 1mhx_A 48 VDGEWTYDDAAKT 60 (65)
T ss_dssp CCSEEEEETTTTE
T ss_pred CccEEEecCceeE
Confidence 6999999987543
No 136
>1pgx_A Protein G; immunoglobulin binding protein; 1.66A {Streptococcus} SCOP: d.15.7.1
Probab=62.08 E-value=1.8 Score=30.50 Aligned_cols=13 Identities=38% Similarity=0.790 Sum_probs=10.7
Q ss_pred EcCeeeeCCCCCc
Q 015103 6 VDGEWRHDENQPH 18 (413)
Q Consensus 6 vdg~w~~~~~~~~ 18 (413)
|||+|-||+.-.+
T Consensus 52 vdgeWsYD~ATkT 64 (83)
T 1pgx_A 52 VDGVWTYDDATKT 64 (83)
T ss_dssp CCEEEEEETTTTE
T ss_pred CCceEeeccccee
Confidence 7999999987643
No 137
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=60.67 E-value=3.4 Score=42.59 Aligned_cols=18 Identities=33% Similarity=0.757 Sum_probs=16.3
Q ss_pred ceEEEcCeeeeCCCCCcc
Q 015103 2 YKFYVDGEWRHDENQPHV 19 (413)
Q Consensus 2 ykf~vdg~w~~~~~~~~~ 19 (413)
|||.|||+|..||..|..
T Consensus 66 Y~f~vdg~~~~dp~n~~~ 83 (645)
T 4aef_A 66 YAFSIDGKFVLDPDNPER 83 (645)
T ss_dssp EEEEETTEEECCTTCCCE
T ss_pred EEEEECCeEecCCCCCCc
Confidence 999999999999988754
No 138
>4gln_D D-RFX001; heterochiral protein-protein complex, D-protein antagonist, factor-inihibitor complex; HET: DTY DSG DTH DVA DPN DTR DGL DIL DAS; 1.60A {Synthetic} PDB: 4gls_D* 4gls_C*
Probab=60.36 E-value=2.6 Score=27.46 Aligned_cols=14 Identities=21% Similarity=0.719 Sum_probs=11.1
Q ss_pred EEEc-CeeeeCCCCC
Q 015103 4 FYVD-GEWRHDENQP 17 (413)
Q Consensus 4 f~vd-g~w~~~~~~~ 17 (413)
..|| |+|.||+.-.
T Consensus 36 n~~d~geWtYddaTK 50 (56)
T 4gln_D 36 XFSDFDDWTYDDATK 50 (56)
T ss_pred cCCcCCeeEecCcce
Confidence 4688 9999998654
No 139
>2khu_A Immunoglobulin G-binding protein G, DNA polymerase IOTA; UBM, ubiquitin-binding domain, translesion synthesis, TLS, ubiquitin-binding protein; NMR {Streptococcus SP} PDB: 2khw_A 2l0f_B*
Probab=46.72 E-value=4.1 Score=30.40 Aligned_cols=13 Identities=46% Similarity=0.930 Sum_probs=0.0
Q ss_pred EcCeeeeCCCCCc
Q 015103 6 VDGEWRHDENQPH 18 (413)
Q Consensus 6 vdg~w~~~~~~~~ 18 (413)
|||+|.||+.-.+
T Consensus 39 vdgew~yd~atkt 51 (108)
T 2khu_A 39 VDGEWTYDDATKT 51 (108)
T ss_dssp -------------
T ss_pred CCceEeecCccee
Confidence 7999999987644
No 140
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=45.60 E-value=38 Score=24.31 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103 302 VSSIPIVDDNDSLLDIYSRSDITALAKD 329 (413)
Q Consensus 302 ~~~lpVvd~~g~lvGiit~~dl~~~~~~ 329 (413)
...+=++|++|..+|+++..+.+.+...
T Consensus 13 ~~eVrli~~~Ge~lGv~~~~eAl~~A~e 40 (78)
T 1tif_A 13 AREVRLIDQNGDQLGIKSKQEALEIAAR 40 (78)
T ss_dssp CSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred CCEEEEECCCCcCCCcccHHHHHHHHHH
Confidence 4557789999999999999999987764
No 141
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=36.64 E-value=50 Score=23.70 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=20.7
Q ss_pred CCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103 384 VRRLVIVEAGSKRVEGIISLSDVFRF 409 (413)
Q Consensus 384 ~~~l~VVd~~~~~liGvIS~~DIl~~ 409 (413)
.+.+=++| ++|..+|++++.+-++.
T Consensus 13 ~~eVrli~-~~Ge~lGv~~~~eAl~~ 37 (78)
T 1tif_A 13 AREVRLID-QNGDQLGIKSKQEALEI 37 (78)
T ss_dssp CSEEEEEC-TTSCEEEEEEHHHHHHH
T ss_pred CCEEEEEC-CCCcCCCcccHHHHHHH
Confidence 35577899 58999999999998875
No 142
>1zxh_A Immunoglobulin G binding protein G; IGG-binding, phage display, immune system/protein binding complex; NMR {Streptococcus SP}
Probab=34.94 E-value=8.3 Score=25.46 Aligned_cols=13 Identities=31% Similarity=0.693 Sum_probs=9.9
Q ss_pred EcCeeeeCCCCCc
Q 015103 6 VDGEWRHDENQPH 18 (413)
Q Consensus 6 vdg~w~~~~~~~~ 18 (413)
|||+|-+|+.-.+
T Consensus 39 ~dg~w~yd~atkt 51 (56)
T 1zxh_A 39 VQGVWTYDDATKT 51 (56)
T ss_dssp TTSEECCCTTTCE
T ss_pred ccceeecccceee
Confidence 5899999986543
No 143
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=34.46 E-value=17 Score=30.00 Aligned_cols=35 Identities=34% Similarity=0.672 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103 372 LHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408 (413)
Q Consensus 372 l~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~ 408 (413)
+.+.++.+...+..-++|-. +++++|+|.+.|.+|
T Consensus 121 ~~~~~~~la~~G~T~v~VA~--d~~l~GvIalaD~iK 155 (156)
T 1svj_A 121 VDQKVDQVARQGATPLVVVE--GSRVLGVIALKDIVK 155 (156)
T ss_dssp HHHHHHHHHHTTCEEEEEEE--TTEEEEEEEEEECCC
T ss_pred HHHHHHHHHhCCCCEEEEEE--CCEEEEEEEEecCCC
Confidence 67778888899988787776 589999999988654
No 144
>1pn5_A Nacht-, LRR- and PYD-containing protein 2; alpha-helix bundle, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.5
Probab=28.42 E-value=12 Score=30.87 Aligned_cols=13 Identities=46% Similarity=0.930 Sum_probs=0.0
Q ss_pred EcCeeeeCCCCCc
Q 015103 6 VDGEWRHDENQPH 18 (413)
Q Consensus 6 vdg~w~~~~~~~~ 18 (413)
|||+|.||+.-.+
T Consensus 39 ~~~~~~~~~~~~~ 51 (159)
T 1pn5_A 39 VDGEWTYDDATKT 51 (159)
T ss_dssp -------------
T ss_pred CCceeecccccCc
Confidence 7999999986543
No 145
>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*
Probab=22.98 E-value=55 Score=31.13 Aligned_cols=25 Identities=12% Similarity=-0.073 Sum_probs=21.1
Q ss_pred CeeeeCCCCCcccCCC-CCcceEEEe
Q 015103 8 GEWRHDENQPHVSGNY-GVVNCVYIA 32 (413)
Q Consensus 8 g~w~~~~~~~~~~~~~-g~~~~~~~~ 32 (413)
|...-||..|...... |...+++.+
T Consensus 124 ~~~~~DP~n~~~~~~~~~~~~s~~~~ 149 (403)
T 3c8d_A 124 PQAIADPLNPQSWKGGLGHAVSALEM 149 (403)
T ss_dssp GGCBCCTTCSSEECCSSSSCEEEEEC
T ss_pred cccccCCCCCCCCCCCCCcccccccC
Confidence 7888999999876554 888999999
No 146
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=20.87 E-value=1.4e+02 Score=19.91 Aligned_cols=30 Identities=10% Similarity=0.069 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHhcCCCCEEEEEeCCCCeE
Q 015103 368 RSDPLHKVMERLANPGVRRLVIVEAGSKRV 397 (413)
Q Consensus 368 ~~~sl~~~~~~m~~~~~~~l~VVd~~~~~l 397 (413)
+-+|+.+|+.+|...+...+.-.|.++|++
T Consensus 11 kpmsveEAv~qmel~gh~F~vF~n~~t~~~ 40 (57)
T 3k2t_A 11 KPMDSEEAVLQMNLLGHSFYVYTDAETNGT 40 (57)
T ss_dssp CCBCHHHHHHHHHHHTCSEEEEEBSSSCCE
T ss_pred CCCCHHHHHHHHHhCCCcEEEEEcCCCCCE
Confidence 567999999999999999888888665654
Done!