Query 015104
Match_columns 413
No_of_seqs 234 out of 651
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 06:45:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015104.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015104hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_O 26S proteasome regulato 100.0 4.2E-57 1.4E-61 459.6 3.9 364 16-395 7-388 (393)
2 3chm_A COP9 signalosome comple 100.0 1.1E-37 3.6E-42 280.9 3.7 143 221-372 24-169 (169)
3 3txn_A 26S proteasome regulato 99.9 3.9E-21 1.3E-25 194.6 15.2 341 39-390 20-389 (394)
4 4b4t_R RPN7, 26S proteasome re 99.7 1.5E-16 5.1E-21 163.0 13.4 237 119-364 151-397 (429)
5 4b4t_P 26S proteasome regulato 99.5 3.6E-15 1.2E-19 153.5 6.0 252 133-400 174-435 (445)
6 4b4t_Q 26S proteasome regulato 99.4 7E-13 2.4E-17 131.7 14.7 335 45-392 63-424 (434)
7 3t5x_A PCI domain-containing p 99.2 1.6E-11 5.5E-16 113.5 7.2 176 170-362 9-195 (203)
8 3t5v_B Nuclear mRNA export pro 98.9 2.2E-09 7.7E-14 110.3 8.1 236 115-360 142-429 (455)
9 4b4t_S RPN3, 26S proteasome re 98.8 1.5E-08 5E-13 105.1 10.2 167 176-358 271-446 (523)
10 1ufm_A COP9 complex subunit 4; 98.3 2.2E-07 7.6E-12 73.6 2.0 51 312-362 28-78 (84)
11 4b0z_A RPN12, 26S proteasome r 96.5 0.0021 7E-08 60.0 4.7 156 176-337 55-214 (229)
12 4b4t_T 26S proteasome regulato 91.0 0.17 5.7E-06 48.3 4.2 160 175-337 57-223 (274)
13 3f6o_A Probable transcriptiona 82.3 1.3 4.3E-05 36.1 4.2 73 313-393 30-106 (118)
14 1wi9_A Protein C20ORF116 homol 81.9 0.4 1.4E-05 36.2 0.9 48 312-359 19-66 (72)
15 2hzt_A Putative HTH-type trans 80.1 2.1 7.3E-05 34.1 4.8 81 297-383 13-94 (107)
16 1rz4_A Eukaryotic translation 71.1 15 0.00051 33.6 8.5 122 251-393 94-216 (226)
17 3r0a_A Putative transcriptiona 70.8 2.7 9.1E-05 34.5 3.0 76 315-393 43-120 (123)
18 1qgp_A Protein (double strande 69.3 2 7E-05 32.5 1.9 49 299-348 17-65 (77)
19 2ia0_A Putative HTH-type trans 66.8 2.8 9.7E-05 36.5 2.5 69 312-380 29-107 (171)
20 3bpv_A Transcriptional regulat 65.1 6.7 0.00023 31.6 4.4 50 313-362 42-91 (138)
21 1xn7_A Hypothetical protein YH 64.4 1.6 5.6E-05 33.3 0.4 43 301-344 4-46 (78)
22 1i1g_A Transcriptional regulat 61.6 5.8 0.0002 32.7 3.4 35 313-347 17-51 (141)
23 1z7u_A Hypothetical protein EF 61.6 8 0.00027 30.8 4.2 69 313-384 34-103 (112)
24 3t8r_A Staphylococcus aureus C 61.5 4.3 0.00015 34.3 2.6 47 312-359 26-72 (143)
25 2fsw_A PG_0823 protein; alpha- 60.9 6.3 0.00021 31.2 3.4 80 297-382 24-104 (107)
26 1ub9_A Hypothetical protein PH 60.6 4 0.00014 31.2 2.1 37 313-349 29-65 (100)
27 2a61_A Transcriptional regulat 60.3 8.5 0.00029 31.3 4.2 49 313-361 46-94 (145)
28 2k02_A Ferrous iron transport 60.2 1.8 6.3E-05 33.8 0.0 45 301-346 4-48 (87)
29 1qbj_A Protein (double-strande 59.9 4.1 0.00014 31.3 1.9 57 300-358 14-70 (81)
30 2pn6_A ST1022, 150AA long hypo 59.8 11 0.00038 31.4 4.9 39 312-350 15-56 (150)
31 1lj9_A Transcriptional regulat 59.5 9.1 0.00031 31.1 4.3 42 313-354 42-83 (144)
32 3lwf_A LIN1550 protein, putati 58.7 4.8 0.00016 34.9 2.4 47 312-359 42-88 (159)
33 2y75_A HTH-type transcriptiona 58.7 5.4 0.00018 32.7 2.7 60 298-359 11-70 (129)
34 1yyv_A Putative transcriptiona 58.4 8.7 0.0003 31.8 3.9 82 296-383 33-115 (131)
35 2oqg_A Possible transcriptiona 58.4 17 0.00057 28.4 5.6 37 313-349 33-69 (114)
36 3i4p_A Transcriptional regulat 58.4 12 0.00042 31.8 5.1 36 312-347 15-50 (162)
37 3f6v_A Possible transcriptiona 58.1 13 0.00045 31.6 5.2 72 313-392 70-142 (151)
38 2gxg_A 146AA long hypothetical 57.9 9.1 0.00031 31.1 4.0 42 313-354 49-90 (146)
39 1oyi_A Double-stranded RNA-bin 57.3 5.5 0.00019 30.7 2.3 45 297-346 18-62 (82)
40 3u3w_A Transcriptional activat 57.0 36 0.0012 30.8 8.4 147 35-208 73-226 (293)
41 2d1h_A ST1889, 109AA long hypo 56.7 4.9 0.00017 31.0 2.0 69 312-385 34-105 (109)
42 1ku9_A Hypothetical protein MJ 55.9 9.4 0.00032 31.0 3.8 57 299-358 29-86 (152)
43 2dbb_A Putative HTH-type trans 55.2 6.5 0.00022 32.9 2.7 36 312-347 21-56 (151)
44 3kp7_A Transcriptional regulat 54.7 11 0.00039 31.0 4.1 47 312-358 49-97 (151)
45 1xd7_A YWNA; structural genomi 54.6 5.2 0.00018 33.7 1.9 55 301-359 12-66 (145)
46 2vn2_A DNAD, chromosome replic 54.4 8.1 0.00028 31.8 3.1 62 287-351 27-88 (128)
47 2e1c_A Putative HTH-type trans 54.0 4.7 0.00016 35.1 1.6 36 312-347 39-74 (171)
48 3k69_A Putative transcription 53.9 6.5 0.00022 34.0 2.5 58 299-359 15-72 (162)
49 4hbl_A Transcriptional regulat 53.3 12 0.0004 30.9 3.9 46 313-358 54-99 (149)
50 3k0l_A Repressor protein; heli 53.0 9.4 0.00032 32.0 3.3 50 313-362 59-108 (162)
51 1sfx_A Conserved hypothetical 52.7 11 0.00039 28.8 3.5 38 313-350 33-70 (109)
52 2cfx_A HTH-type transcriptiona 51.4 4.9 0.00017 33.6 1.2 36 312-347 17-52 (144)
53 2cyy_A Putative HTH-type trans 51.3 5.5 0.00019 33.5 1.6 36 312-347 19-54 (151)
54 2kko_A Possible transcriptiona 51.2 13 0.00043 29.5 3.7 62 313-382 37-98 (108)
55 2pg4_A Uncharacterized protein 51.2 5.8 0.0002 30.5 1.6 38 314-353 30-68 (95)
56 1ylf_A RRF2 family protein; st 51.1 4.4 0.00015 34.3 0.9 57 299-359 17-73 (149)
57 3nrv_A Putative transcriptiona 50.7 9.9 0.00034 31.1 3.1 44 313-356 53-96 (148)
58 3cuo_A Uncharacterized HTH-typ 49.9 16 0.00054 27.7 4.0 38 312-349 36-73 (99)
59 3deu_A Transcriptional regulat 49.9 13 0.00044 31.6 3.7 50 313-362 67-116 (166)
60 3s2w_A Transcriptional regulat 49.3 12 0.0004 31.2 3.4 50 313-362 63-112 (159)
61 2p7v_B Sigma-70, RNA polymeras 49.2 8.1 0.00028 27.7 2.0 29 313-341 24-52 (68)
62 2qfc_A PLCR protein; TPR, HTH, 48.8 25 0.00084 32.0 5.8 30 178-208 197-226 (293)
63 3g3z_A NMB1585, transcriptiona 48.7 9.8 0.00034 31.1 2.7 41 313-353 44-84 (145)
64 4aik_A Transcriptional regulat 48.6 11 0.00038 31.6 3.0 50 313-362 45-94 (151)
65 3df8_A Possible HXLR family tr 48.2 17 0.00059 28.9 4.0 55 294-349 23-78 (111)
66 2nnn_A Probable transcriptiona 48.1 18 0.0006 29.0 4.2 49 313-361 51-99 (140)
67 2f2e_A PA1607; transcription f 48.0 11 0.00038 31.6 3.0 64 296-363 22-85 (146)
68 3tgn_A ADC operon repressor AD 47.8 13 0.00044 30.3 3.3 49 315-363 52-100 (146)
69 2p5v_A Transcriptional regulat 47.7 5.8 0.0002 33.8 1.2 36 312-347 22-57 (162)
70 2fbh_A Transcriptional regulat 47.6 14 0.00048 29.9 3.5 43 312-354 50-92 (146)
71 2v79_A DNA replication protein 47.6 14 0.00047 31.0 3.5 70 287-359 27-98 (135)
72 3boq_A Transcriptional regulat 46.9 13 0.00045 30.8 3.3 44 313-356 61-104 (160)
73 3eco_A MEPR; mutlidrug efflux 46.7 11 0.00037 30.5 2.7 49 313-361 46-94 (139)
74 3bja_A Transcriptional regulat 46.2 14 0.00049 29.5 3.3 42 313-354 46-87 (139)
75 3ech_A MEXR, multidrug resista 45.4 14 0.00048 30.0 3.2 50 313-362 50-99 (142)
76 2cg4_A Regulatory protein ASNC 44.6 11 0.00036 31.7 2.3 35 312-346 20-54 (152)
77 1tbx_A ORF F-93, hypothetical 44.3 33 0.0011 26.1 5.1 67 313-384 21-91 (99)
78 2rdp_A Putative transcriptiona 44.0 15 0.00052 30.0 3.2 44 313-356 55-98 (150)
79 2fa5_A Transcriptional regulat 43.9 16 0.00054 30.3 3.3 44 313-356 62-105 (162)
80 1ku3_A Sigma factor SIGA; heli 42.7 11 0.00038 27.4 1.9 28 313-340 29-56 (73)
81 2hr3_A Probable transcriptiona 42.7 15 0.00051 29.9 2.9 44 313-356 49-92 (147)
82 1jgs_A Multiple antibiotic res 42.4 17 0.00057 29.2 3.2 44 313-356 47-90 (138)
83 3fm5_A Transcriptional regulat 41.1 14 0.00049 30.3 2.6 50 313-362 53-102 (150)
84 3t72_q RNA polymerase sigma fa 40.9 12 0.0004 29.7 1.8 29 313-341 38-66 (99)
85 3cdh_A Transcriptional regulat 40.2 15 0.0005 30.4 2.5 42 313-354 56-97 (155)
86 1tty_A Sigma-A, RNA polymerase 40.1 13 0.00043 28.2 1.9 29 313-341 37-65 (87)
87 3u2r_A Regulatory protein MARR 40.1 34 0.0012 28.6 4.9 87 313-401 61-156 (168)
88 4a5n_A Uncharacterized HTH-typ 40.0 41 0.0014 27.9 5.2 82 296-383 24-106 (131)
89 2frh_A SARA, staphylococcal ac 39.3 18 0.00062 29.1 2.9 69 313-383 52-120 (127)
90 2eth_A Transcriptional regulat 39.0 19 0.00067 29.6 3.1 42 313-354 57-98 (154)
91 2htj_A P fimbrial regulatory p 38.7 19 0.00064 26.7 2.7 34 313-346 13-46 (81)
92 2fbi_A Probable transcriptiona 38.5 26 0.0009 28.0 3.8 50 313-362 49-98 (142)
93 1j5y_A Transcriptional regulat 38.3 15 0.00051 32.1 2.4 53 294-346 16-69 (187)
94 3jw4_A Transcriptional regulat 37.9 21 0.0007 29.2 3.1 66 313-380 56-121 (148)
95 3hug_A RNA polymerase sigma fa 37.4 12 0.00041 28.6 1.4 28 313-340 52-79 (92)
96 3hsr_A HTH-type transcriptiona 36.9 17 0.0006 29.5 2.4 51 312-362 48-98 (140)
97 2qvo_A Uncharacterized protein 36.3 29 0.00099 26.4 3.5 46 313-358 29-74 (95)
98 3bj6_A Transcriptional regulat 36.1 23 0.0008 28.8 3.1 41 313-353 53-93 (152)
99 2o8x_A Probable RNA polymerase 36.0 13 0.00046 26.2 1.4 27 314-340 31-57 (70)
100 2heo_A Z-DNA binding protein 1 35.9 14 0.00049 26.7 1.5 46 298-346 12-57 (67)
101 3bro_A Transcriptional regulat 35.5 19 0.00064 28.9 2.4 41 314-354 50-90 (141)
102 2pex_A Transcriptional regulat 35.2 14 0.00048 30.4 1.6 42 313-354 60-101 (153)
103 3t5v_A Nuclear mRNA export pro 34.0 40 0.0014 32.4 4.8 65 269-335 177-246 (316)
104 2jt1_A PEFI protein; solution 33.6 7.8 0.00027 29.4 -0.3 33 313-345 23-55 (77)
105 3oop_A LIN2960 protein; protei 33.5 18 0.00061 29.3 1.9 42 313-354 50-91 (143)
106 2w25_A Probable transcriptiona 33.0 10 0.00035 31.7 0.3 37 312-348 19-55 (150)
107 1s3j_A YUSO protein; structura 32.5 24 0.00082 28.9 2.6 41 313-353 50-90 (155)
108 3bdd_A Regulatory protein MARR 31.9 33 0.0011 27.4 3.3 41 313-353 44-84 (142)
109 2wpv_A GET4, UPF0363 protein Y 31.8 2.4E+02 0.0084 26.7 9.9 113 36-151 12-128 (312)
110 3pqk_A Biofilm growth-associat 31.5 39 0.0013 25.9 3.6 39 313-351 35-73 (102)
111 4b8x_A SCO5413, possible MARR- 31.4 23 0.00078 29.3 2.3 73 284-362 27-99 (147)
112 2lfw_A PHYR sigma-like domain; 31.1 18 0.00062 30.3 1.6 34 313-348 108-141 (157)
113 2bv6_A MGRA, HTH-type transcri 31.0 25 0.00086 28.3 2.5 42 313-354 50-91 (142)
114 3f3x_A Transcriptional regulat 30.8 37 0.0013 27.3 3.5 47 316-362 52-98 (144)
115 3cjn_A Transcriptional regulat 30.3 27 0.00091 28.9 2.5 42 313-354 65-106 (162)
116 2nyx_A Probable transcriptiona 30.0 29 0.001 29.1 2.8 44 313-356 58-101 (168)
117 2fbk_A Transcriptional regulat 29.6 25 0.00085 30.0 2.3 43 314-356 86-128 (181)
118 2x4h_A Hypothetical protein SS 29.5 59 0.002 26.1 4.5 52 303-359 21-72 (139)
119 2gqq_A Leucine-responsive regu 29.0 29 0.001 29.3 2.6 36 312-347 25-60 (163)
120 3jth_A Transcription activator 28.9 46 0.0016 25.2 3.6 38 313-350 35-72 (98)
121 1tc3_C Protein (TC3 transposas 28.5 17 0.00058 23.2 0.8 24 315-338 22-45 (51)
122 3e6m_A MARR family transcripti 28.2 23 0.00078 29.5 1.7 43 313-355 66-108 (161)
123 2jpc_A SSRB; DNA binding prote 28.1 23 0.00077 24.4 1.4 27 314-340 13-39 (61)
124 1u2w_A CADC repressor, cadmium 27.1 32 0.0011 27.7 2.4 37 313-349 55-91 (122)
125 1nxh_A MTH396 protein; hypothe 26.7 47 0.0016 27.5 3.2 40 319-384 27-66 (126)
126 3mzy_A RNA polymerase sigma-H 26.1 23 0.00079 29.0 1.4 27 314-340 124-150 (164)
127 3nqo_A MARR-family transcripti 26.0 37 0.0013 29.3 2.8 51 312-362 55-105 (189)
128 2q1z_A RPOE, ECF SIGE; ECF sig 24.7 26 0.00088 29.6 1.4 27 314-340 151-177 (184)
129 2qlz_A Transcription factor PF 24.3 34 0.0012 31.3 2.2 44 312-358 176-219 (232)
130 1nth_A Monomethylamine methylt 24.3 41 0.0014 33.4 2.9 69 17-108 383-452 (458)
131 3n0r_A Response regulator; sig 24.2 1.4E+02 0.0047 27.6 6.6 28 313-340 126-153 (286)
132 2fxa_A Protease production reg 24.1 52 0.0018 29.0 3.4 50 313-362 61-110 (207)
133 1or7_A Sigma-24, RNA polymeras 24.0 27 0.00094 29.7 1.5 28 313-340 155-182 (194)
134 2qww_A Transcriptional regulat 23.6 27 0.00091 28.6 1.3 42 313-354 54-97 (154)
135 1je8_A Nitrate/nitrite respons 22.3 32 0.0011 25.6 1.4 27 314-340 36-62 (82)
136 1r1u_A CZRA, repressor protein 22.2 51 0.0017 25.6 2.6 37 313-349 38-74 (106)
137 1z91_A Organic hydroperoxide r 21.9 21 0.00072 28.9 0.3 46 313-358 53-101 (147)
138 2rnj_A Response regulator prot 21.5 34 0.0012 25.9 1.4 27 314-340 44-70 (91)
139 3r4k_A Transcriptional regulat 21.0 41 0.0014 30.9 2.2 63 300-367 7-69 (260)
140 1x3u_A Transcriptional regulat 20.7 38 0.0013 24.5 1.5 27 314-340 31-57 (79)
141 3c57_A Two component transcrip 20.4 36 0.0012 26.1 1.4 27 314-340 42-68 (95)
142 2o0y_A Transcriptional regulat 20.0 56 0.0019 29.9 2.8 47 300-346 24-70 (260)
No 1
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-57 Score=459.64 Aligned_cols=364 Identities=15% Similarity=0.197 Sum_probs=267.2
Q ss_pred eeeecccccccccCCcchhHHHHHHHHHHHhhhhhhhhhhHHHHHhhhhhhhhccCC-CCcchhheeeehhcccCCCChh
Q 015104 16 VVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKVS-DKDLECIFTVICNLVTKPESLD 94 (413)
Q Consensus 16 ~~~~~~~~~~~~~~~~~a~~e~~~~~~~~e~l~~~klw~qLt~~l~~~~~~~~~~~~-dke~e~~~n~i~~lv~~~~~~~ 94 (413)
|.+||++++.+ ++||+++.|+++|++|++|||||||.+|.. +|.+.. ....-.+|+.|+ ..|.+..
T Consensus 7 i~~~l~~~~~~------~~~~l~~~~~~le~~~~~kLWhqlt~~L~~----~~~~~~~~~~~~~ly~~fi---~~f~~ki 73 (393)
T 4b4t_O 7 IDTILSTLRME------ADPSLHPLFEQFEKFYEEKLWFQLSESLTK----FFDDAKSTPLRLRLYDNFV---SKFYDKI 73 (393)
T ss_dssp HHHHHHHHHCS------SCSSCCSSHHHHHHHHCCSSCCSCCCTTHH----HHCCCSSCCCCHHHHHHHH---HHHHHHS
T ss_pred HHHHHHHHHhc------CCHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHhChhcchHHHHHHHHHH---HHHHHhc
Confidence 67899999998 888999999999999999999999998866 555421 123445777664 3454555
Q ss_pred HHHHHHHHHHhhhhcCCCCCcchhHHHHHHHhhhhcC---c---------chhhHHH--HHHHhHhhcCccccccccchh
Q 015104 95 EVHEMTKLISGKIIQQPNDKPAMRLKILFNLYNLLEN---P---------YSRFFVY--MKALNLAVNGKVTEHIIPSFK 160 (413)
Q Consensus 95 ~~l~~v~~l~~~~~~~~~~~~~~~l~~L~~Lfn~l~~---~---------~~r~~v~--~~il~~a~~~~~~~~~~~~l~ 160 (413)
|.+++++.++.... + ..++..++.+|..++..+.. . ..++.+| +.+..+--..|+++.+++.++
T Consensus 74 n~L~lv~~~~~~~~-~-~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~ 151 (393)
T 4b4t_O 74 NQLSVVKYLLASLK-D-SKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLD 151 (393)
T ss_dssp CSHHHHHTTHHHHH-H-TTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh-h-cCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 77888886655443 3 35678899999998776531 0 1234444 233333334589999999999
Q ss_pred chHHHHhhhc-cCchhhhHHHHHHHHhhhhcccCchhhHHHHHHHhhhccCCccchhhHHHHHHHHHHHhhhcCCCcccc
Q 015104 161 KIDSFLKEWN-IDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQC 239 (413)
Q Consensus 161 ~~~~~L~~w~-~~~~~~~~~y~~~~~~l~~~~~~~~~~y~~~l~yL~t~~~~~~~~~~e~~~~a~~lii~aL~~~~i~~f 239 (413)
+++..+++.+ +++.++.+||.+.+.+++. +++++.+|++++.|++|++..+..+..++...|+.++++||.+|++|+|
T Consensus 152 ~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~-~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f 230 (393)
T 4b4t_O 152 DLEKTLDKKDSIPLRITNSFYSTNSQYFKF-KNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNF 230 (393)
T ss_dssp HHHHHHHHSCCSSSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCST
T ss_pred HHHHhhhccCCccHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCCh
Confidence 9999999876 6678999999999999998 5889999999999999998654334567788999999999999999999
Q ss_pred -ccCCCccccccccchhhhHHHHHHHHHHHhhcccchhccccchhhhhhcCCcchhHHhhhhhhhhhccCCC-CCCCcch
Q 015104 240 -DLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSN-ESGQIPY 317 (413)
Q Consensus 240 -eLL~~p~v~~L~~~~~~~~l~~LL~~f~~G~l~~f~~~~~~~~~~l~~~~l~~~~~~~KirLLaL~~L~~~-~~r~isy 317 (413)
+||.+|.+++|.+++++.|+++||.+|+.||+.+|+++.+.+.+.+...+.....+.+|||+++|++|++. ++|.|||
T Consensus 231 ~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f 310 (393)
T 4b4t_O 231 GELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHESFLRQKICLMTLIETVFVKNIRMLSF 310 (393)
T ss_dssp HHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEH
T ss_pred HHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcH
Confidence 89999999999877899999999999999999999998776654443333345677999999999999976 5789999
Q ss_pred hhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccccccchhhHHHHHhhhhhhhhhHHHHHHHhhhcc
Q 015104 318 GLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRANVANVISTIQATN 395 (413)
Q Consensus 318 ~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~R~~~~~q~~~L~~rL~~W~~~v~~~~~~v~~~~ 395 (413)
++|+++|+||++|||.|||+||+.|+|+|+|||++|+|+|+|++||+|+++||+.|+++|..|+++|+++.+.|++.+
T Consensus 311 ~~ia~~l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~~L~~W~~~v~~l~~~ve~~~ 388 (393)
T 4b4t_O 311 EDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWNDQVEKLGKKMEARG 388 (393)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC--------------------------------------
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999843
No 2
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=100.00 E-value=1.1e-37 Score=280.88 Aligned_cols=143 Identities=22% Similarity=0.357 Sum_probs=129.9
Q ss_pred HHHHHHHHhhhcCCCcccc-ccCCCccccccccchhhhHHHHHHHHHHHhhcccchhccccchhhhhhcCCcchhHHhhh
Q 015104 221 EEAVRTIIEFVKSPDMFQC-DLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKM 299 (413)
Q Consensus 221 ~~a~~lii~aL~~~~i~~f-eLL~~p~v~~L~~~~~~~~l~~LL~~f~~G~l~~f~~~~~~~~~~l~~~~l~~~~~~~Ki 299 (413)
+.|++++++||.+|++|+| |||.+|+|++|+++ +++|+++||++|++|++.+|.++.+++|. |+ +.+.+||
T Consensus 24 ~~a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~-~~~~~~~LL~iF~~G~~~~y~~~~~~~p~------L~-~~~~~Kl 95 (169)
T 3chm_A 24 EALGPLIIEATSHPSLFAFSEILALPNVAQLEGT-TDSVYLDLLRLFAHGTWGDYKCNATRLPH------LS-PDQILKL 95 (169)
T ss_dssp GGHHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTS-TTHHHHHHHHHHHHCCHHHHHHHGGGSCC------CC-HHHHHHH
T ss_pred HHHHHHHHHHhcCCCeeehHHHhCChHHHHhcCC-ChhHHHHHHHHHhcCCHHHHHHhHHhCcc------hH-HHHHHHH
Confidence 4699999999999999999 89999999999875 79999999999999999999997666553 34 8899999
Q ss_pred hhhhhhccCCCCCCCcchhhhhhccccC-cchhhhHHh-hhhhhccccccccccccEEEEecccccccchhhHHH
Q 015104 300 RLMSLVDLGSNESGQIPYGLIKDTLQIN-NDEVEKWVV-KARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQT 372 (413)
Q Consensus 300 rLLaL~~L~~~~~r~isy~~Ia~~l~i~-~~eVE~lvi-~aI~~gLI~gkIDQv~~~v~vt~v~~R~~~~~q~~~ 372 (413)
|+|||++||++ +|++||++|+++|+|+ .+|||+||| +||+.|||+|||||++++|+|+|++||+|+++||..
T Consensus 96 rlLtL~sLa~~-~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~R~l~~~qi~~ 169 (169)
T 3chm_A 96 KQLTVLTLAES-NKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQLGN 169 (169)
T ss_dssp HHHHHHHHHHH-CSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECCTTCCC-----
T ss_pred HHHHHHHHHHh-CCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecCCccCHHhccC
Confidence 99999999998 8999999999999999 899999999 999999999999999999999999999999999963
No 3
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.85 E-value=3.9e-21 Score=194.57 Aligned_cols=341 Identities=11% Similarity=0.035 Sum_probs=224.9
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHhhhhhhhhccCCCCcchhheeeehhcccCCC-ChhHHHHHHHHHHhhhhcCCCCCcch
Q 015104 39 RLCLEAQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPE-SLDEVHEMTKLISGKIIQQPNDKPAM 117 (413)
Q Consensus 39 ~~~~~~e~l~~~klw~qLt~~l~~~~~~~~~~~~dke~e~~~n~i~~lv~~~~-~~~~~l~~v~~l~~~~~~~~~~~~~~ 117 (413)
.-+.++-++|.+..-.+-...++....++|+..+-.--+.+...++..+..++ +.+.+..+|....+-...+ .+.-+
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~--~r~fl 97 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE--KRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT--TCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 44556666666655555455566777888887664333334444443344432 3355555555443322211 12222
Q ss_pred h--------------------HHHHHHHhhhhc---CcchhhHHHHHHHhHhhcCccccccccchhchHHHHhhhccCch
Q 015104 118 R--------------------LKILFNLYNLLE---NPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIK 174 (413)
Q Consensus 118 ~--------------------l~~L~~Lfn~l~---~~~~r~~v~~~il~~a~~~~~~~~~~~~l~~~~~~L~~w~~~~~ 174 (413)
| ++.+..+-..+. .+..-.+|++..+++....+++..++..+..+.+..+.-..++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2 222333333222 23567788888888888888888888888877777765445566
Q ss_pred hhhHHHHHHHHhhh-hcccCchhhHHHHHHHhhhccCCccchhhHHHHHHHHHHHhhhcCCCcccc-ccCCCcccccccc
Q 015104 175 DKRALFLGIANVLK-ESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQC-DLLDMPAIGQLEN 252 (413)
Q Consensus 175 ~~~~~y~~~~~~l~-~~~~~~~~~y~~~l~yL~t~~~~~~~~~~e~~~~a~~lii~aL~~~~i~~f-eLL~~p~v~~L~~ 252 (413)
.++.+.....-++- . .++|+.|+..++..+.+|+..+. .++.+.+.++++++|.+.+++++ .++.+|....+ .
T Consensus 178 i~a~i~~~~Gi~~l~~-~rdyk~A~~~F~eaf~~f~~~~~---~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~-~ 252 (394)
T 3txn_A 178 VQGALDLQSGILHAAD-ERDFKTAFSYFYEAFEGFDSVDS---VKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITY-S 252 (394)
T ss_dssp HHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHTTTCH---HHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTT-C
T ss_pred HHHHHHHHhhHHHHHh-ccCHHHHHHHHHHHHhccccccc---HHHHHHHHHHHHHHHHcCCHHHHHHHhcccccccc-C
Confidence 67666666555555 4 47799999999999999986432 45667889999999999999998 68888876555 4
Q ss_pred chhhhHHHHHHHHHHHhhcccchhccccchhhhhhcCC--cc-hhHHhhhhhhhhhccCCCCCCCcchhhhhhccccCcc
Q 015104 253 DAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGL--VH-EDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQINND 329 (413)
Q Consensus 253 ~~~~~~l~~LL~~f~~G~l~~f~~~~~~~~~~l~~~~l--~~-~~~~~KirLLaL~~L~~~~~r~isy~~Ia~~l~i~~~ 329 (413)
+|+..|+.+|+.+|..|++..|......+.+.+...+. .| ..+.++||..+|.+++.+ ++.|+++.||+.+|+|++
T Consensus 253 ~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~p-YsrIsl~~iA~~l~ls~~ 331 (394)
T 3txn_A 253 GRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEP-YSRVQVAHVAESIQLPMP 331 (394)
T ss_dssp SHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTT-CSEEEHHHHHHHHTCCHH
T ss_pred CccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHh-hceeeHHHHHHHHCcCHH
Confidence 47899999999999999999999887666544443332 12 467899999999999998 899999999999999999
Q ss_pred hhhhHHhhhhhhccccccccccccEEEEecccccccchhhHHHHHhhhhhhhhhHHHHHHH
Q 015104 330 EVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRANVANVIST 390 (413)
Q Consensus 330 eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~R~~~~~q~~~L~~rL~~W~~~v~~~~~~ 390 (413)
+||.+|+++|..|.|.|+|||++|+|+++...+|. ...+..-+.+..|...|+.+.+.
T Consensus 332 evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~---~~y~~ale~l~~ls~vVd~L~~~ 389 (394)
T 3txn_A 332 QVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVD---KTYERVLETIQSMGKVVDTLYQK 389 (394)
T ss_dssp HHHHHHHHHHHTTSSCEEEETTTTEEEECCC------------------------------
T ss_pred HHHHHHHHHHHCCCeeEEEcCCCCEEEECCCcchh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987773 34455556789999988887654
No 4
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.5e-16 Score=162.96 Aligned_cols=237 Identities=14% Similarity=0.184 Sum_probs=181.7
Q ss_pred HHHHHHHhhhhcCcchhhHHHHHHHhHhhcCccccccccchhchHHHHhh---hccCchhhhHHHHHHHHhhhhcccCch
Q 015104 119 LKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKE---WNIDIKDKRALFLGIANVLKESRSSSK 195 (413)
Q Consensus 119 l~~L~~Lfn~l~~~~~r~~v~~~il~~a~~~~~~~~~~~~l~~~~~~L~~---w~~~~~~~~~~y~~~~~~l~~~~~~~~ 195 (413)
++.+..+...-..+..+.++++.+++++-..+|...+...+.++...+.+ |.. ..+.+.|.+++... .++|.
T Consensus 151 ~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~--~~~lk~~~gl~~l~---~r~f~ 225 (429)
T 4b4t_R 151 EKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWER--RNRYKTYYGIHCLA---VRNFK 225 (429)
T ss_dssp HHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHH--HHHHHHHHHHGGGG---TSCHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHH--HHHHHHHHHHHHHH---hChHH
Confidence 34444444433344678999999999999999999999999988888764 332 44556666665543 35689
Q ss_pred hhHHHHHHHhhhccCCccchhhHHHHHHHHHHHhhhcCCCcccc--ccCCCccccc-cccchhhhHHHHHHHHHHHhhcc
Q 015104 196 DSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQC--DLLDMPAIGQ-LENDAKYASVYQLLKIFLTQRLD 272 (413)
Q Consensus 196 ~~y~~~l~yL~t~~~~~~~~~~e~~~~a~~lii~aL~~~~i~~f--eLL~~p~v~~-L~~~~~~~~l~~LL~~f~~G~l~ 272 (413)
.+++.++..+.+|+..+. ..+...+..+++.++.+.+.-+. .++..|.+.. +...|...++.+++..|..+++.
T Consensus 226 ~Aa~~f~e~~~t~~~~e~---~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~ 302 (429)
T 4b4t_R 226 EAAKLLVDSLATFTSIEL---TSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYA 302 (429)
T ss_dssp HHHHHHHHHHHHSCCSCH---HHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhccCCccch---hhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHH
Confidence 999999998898877554 34567899999999999888775 5888887754 45556677889999999999998
Q ss_pred cchhc-cccchhhhhhcCC--cc-hhHHhhhhhhhhhccCCCCCCCcchhhhhhccccCcchhhhHHhhhhhhccccccc
Q 015104 273 GYLEF-QAGNSALLKSYGL--VH-EDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKM 348 (413)
Q Consensus 273 ~f~~~-~~~~~~~l~~~~l--~~-~~~~~KirLLaL~~L~~~~~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkI 348 (413)
.|... ....+..+..... .| ..+.+.||..++.+++.. ++.|+++.||+.||+|+++||.++++.|..|.|.|||
T Consensus 303 ~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~-Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akI 381 (429)
T 4b4t_R 303 SYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLES-YKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVI 381 (429)
T ss_dssp HHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHT-CSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEE
T ss_pred HHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHH-hceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEE
Confidence 87543 3333333333222 23 467899999999999998 9999999999999999999999999999999999999
Q ss_pred cccccEEEEecccccc
Q 015104 349 DQMNQVVIVRRCTERV 364 (413)
Q Consensus 349 DQv~~~v~vt~v~~R~ 364 (413)
||++|+|++++..+|.
T Consensus 382 D~~~giv~~~~~d~~~ 397 (429)
T 4b4t_R 382 DRVNGIVETNRPDNKN 397 (429)
T ss_dssp ETTTTEEEECC-----
T ss_pred cCCCCEEEECCCCchh
Confidence 9999999999998884
No 5
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.54 E-value=3.6e-15 Score=153.51 Aligned_cols=252 Identities=14% Similarity=0.123 Sum_probs=155.3
Q ss_pred chhhHHHHHHHhHhhcCccccccccchhchHHHHhhhccCchhhhHHHHHHHHhhhhcccCchhhHHHHHHHhhhccCCc
Q 015104 133 YSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGED 212 (413)
Q Consensus 133 ~~r~~v~~~il~~a~~~~~~~~~~~~l~~~~~~L~~w~~~~~~~~~~y~~~~~~l~~~~~~~~~~y~~~l~yL~t~~~~~ 212 (413)
..+..+++..++++...+|...+...+.++..-...-...+.-+..||...+.++.. .++|.++|++......+++..+
T Consensus 174 ~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~-e~~y~~a~~~y~e~~~~~~~~~ 252 (445)
T 4b4t_P 174 SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLH-KREYLEVAQYLQEIYQTDAIKS 252 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhcccccC
Confidence 457888888888888888887777777666543333334456678888888888776 4778999998888877775422
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCcccc-ccCCCccccccccchhhhHHHHHHHHHHHhhcccchhccccchhhhhhcCCc
Q 015104 213 AHTMDEAKEEAVRTIIEFVKSPDMFQC-DLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLV 291 (413)
Q Consensus 213 ~~~~~e~~~~a~~lii~aL~~~~i~~f-eLL~~p~v~~L~~~~~~~~l~~LL~~f~~G~l~~f~~~~~~~~~~l~~~~l~ 291 (413)
- .......-..++...+++|..-.. +++..+.... ..++.+++.+|+.+|..+++..|..+...+...+...++-
T Consensus 253 d--~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~--~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~ 328 (445)
T 4b4t_P 253 D--EAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDN--NLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLA 328 (445)
T ss_dssp C--HHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHS--SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSS
T ss_pred C--HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcc--cccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchh
Confidence 1 111222333444456677655444 4554332211 1135678999999999999999887765555444443321
Q ss_pred ---------chhHHhhhhhhhhhccCCCCCCCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccc
Q 015104 292 ---------HEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTE 362 (413)
Q Consensus 292 ---------~~~~~~KirLLaL~~L~~~~~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~ 362 (413)
-..+.+.++--.+..++.. ++.|+|+.||+.+++|+++||.++.++|..|.|.|+|||++|+|+..+..+
T Consensus 329 ~~~~~~~~~~~~L~~~v~ehnl~~i~k~-Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~ 407 (445)
T 4b4t_P 329 FGGEANKHHWEDLQKRVIEHNLRVISEY-YSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKN 407 (445)
T ss_dssp CCCSCSSHHHHHHHHHHHHHHHHHHHHH-EEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC-----
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHH-hceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCC
Confidence 1245666666667766665 889999999999999999999999999999999999999999988765432
Q ss_pred cccchhhHHHHHhhhhhhhhhHHHHHHHhhhccccccc
Q 015104 363 RVFGQHQWQTLRTKLSTWRANVANVISTIQATNKITED 400 (413)
Q Consensus 363 R~~~~~q~~~L~~rL~~W~~~v~~~~~~v~~~~~~~~~ 400 (413)
. .+.|..|.++++++.+.|+.+..+.++
T Consensus 408 ~----------~~~l~~W~~~i~~l~~~v~k~~~lI~k 435 (445)
T 4b4t_P 408 S----------SQLLNEWSHNVDELLEHIETIGHLITK 435 (445)
T ss_dssp --------------------------------------
T ss_pred h----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 357999999999999999988875443
No 6
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.45 E-value=7e-13 Score=131.72 Aligned_cols=335 Identities=10% Similarity=0.044 Sum_probs=198.0
Q ss_pred HhhhhhhhhhhHHHHHhhhhhhhhccCCCCcchhhee-eehhcccCCCChhHHHHHHHHHHhhhhcCCCCC---------
Q 015104 45 QESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFT-VICNLVTKPESLDEVHEMTKLISGKIIQQPNDK--------- 114 (413)
Q Consensus 45 e~l~~~klw~qLt~~l~~~~~~~~~~~~dke~e~~~n-~i~~lv~~~~~~~~~l~~v~~l~~~~~~~~~~~--------- 114 (413)
+-+...+.|.+....+. .+-.++...++...+.... .+..+-...+..+.+..+++.............
T Consensus 63 ~~y~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (434)
T 4b4t_Q 63 QLYVTMGAKDKLREFIP-HSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKL 141 (434)
T ss_dssp HHHHHHTCHHHHHHHHH-HTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHH-HHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 33455667877766442 2333444433333333333 333333344556777766654443322211111
Q ss_pred ---------cchhHHHHHHHhhhhc---CcchhhHHHHHHHhHhhcCccccccccchhchHHHHhhhccCchhhhHHHHH
Q 015104 115 ---------PAMRLKILFNLYNLLE---NPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLG 182 (413)
Q Consensus 115 ---------~~~~l~~L~~Lfn~l~---~~~~r~~v~~~il~~a~~~~~~~~~~~~l~~~~~~L~~w~~~~~~~~~~y~~ 182 (413)
-...+.++..+..... +......++..+.++....|+++.+...++++-........+......+|..
T Consensus 142 a~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 221 (434)
T 4b4t_Q 142 ATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLM 221 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Confidence 1112222222222221 2345677777777877778888888888777766666565556677888888
Q ss_pred HHHhhhhcccCchhhHHHHHHHhhhccCCccc-hhhHHHHHHHHHHHhhhcCCCcccc-ccCCCccccccccchhhhHHH
Q 015104 183 IANVLKESRSSSKDSFKFLTKYLATFSGEDAH-TMDEAKEEAVRTIIEFVKSPDMFQC-DLLDMPAIGQLENDAKYASVY 260 (413)
Q Consensus 183 ~~~~l~~~~~~~~~~y~~~l~yL~t~~~~~~~-~~~e~~~~a~~lii~aL~~~~i~~f-eLL~~p~v~~L~~~~~~~~l~ 260 (413)
...++.. .+++.+++++...++.+++..... ....+.......++.....+..-.. .++..+........+...++.
T Consensus 222 ~g~~~~~-~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (434)
T 4b4t_Q 222 SGILHCE-DKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMK 300 (434)
T ss_dssp HHHHTTS-SSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHH
T ss_pred HHHHHHH-HHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHH
Confidence 8887776 578999999999999988653221 1122333333444444444433222 333333333322334678899
Q ss_pred HHHHHHHHhhcccchhccccchhhhhhcCCc---chhHHhhhhhhhhhccCCCCCCCcchhhhhhccccCcchhhhHHhh
Q 015104 261 QLLKIFLTQRLDGYLEFQAGNSALLKSYGLV---HEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVK 337 (413)
Q Consensus 261 ~LL~~f~~G~l~~f~~~~~~~~~~l~~~~l~---~~~~~~KirLLaL~~L~~~~~r~isy~~Ia~~l~i~~~eVE~lvi~ 337 (413)
.++..|..+++..|......+...+...+.. ...+.+.++...+..++.. +..|+++.|++.+++++++||.++.+
T Consensus 301 ~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~-y~~i~l~~la~~l~~~~~~~E~~l~~ 379 (434)
T 4b4t_Q 301 AVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEP-FECVEISHISKIIGLDTQQVEGKLSQ 379 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSS-CSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCHHHHHHHhCcCHHHHHHHHHH
Confidence 9999999999999998776555444332221 2356788999999999987 88999999999999999999999999
Q ss_pred hhhhccccccccccccEEEEecccccccchhhHHHHHhhhhhhhhhHHHHHHHhh
Q 015104 338 ARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRANVANVISTIQ 392 (413)
Q Consensus 338 aI~~gLI~gkIDQv~~~v~vt~v~~R~~~~~q~~~L~~rL~~W~~~v~~~~~~v~ 392 (413)
+|..|.|.|+|||++|+|.+....++. +....|.+.++++.++|+
T Consensus 380 lI~~~~i~a~id~~~g~v~~~~~~~~~----------~~~~~~l~~~~~l~~~vd 424 (434)
T 4b4t_Q 380 MILDKIFYGVLDQGNGWLYVYETPNQD----------ATYDSALELVGQLNKVVD 424 (434)
T ss_dssp HHHHTSSCCEEETTTTEEECC----------------------------------
T ss_pred HHhCCCcceecccccCeEeeCCCcchh----------HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988765542 224445555555555544
No 7
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.20 E-value=1.6e-11 Score=113.49 Aligned_cols=176 Identities=12% Similarity=0.109 Sum_probs=132.5
Q ss_pred ccCchhhhHHHHHHHHhhhhcccCchhhHHHHHHHhhhccCCccchhhHHHHHHHHHHHhhhcCCCccccccCCCccccc
Q 015104 170 NIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCDLLDMPAIGQ 249 (413)
Q Consensus 170 ~~~~~~~~~~y~~~~~~l~~~~~~~~~~y~~~l~yL~t~~~~~~~~~~e~~~~a~~lii~aL~~~~i~~feLL~~p~v~~ 249 (413)
..+..++..||.+...+++ +++.+|+..+...+..++.+. ....+..-..++...|+...+=.++++..+.
T Consensus 9 ~~~q~v~Y~YYlGr~~~~~---~~y~~A~~~L~~A~~~~~~~~---~~~k~~IL~yLIp~~Ll~G~iP~~~ll~~~~--- 79 (203)
T 3t5x_A 9 STAQRVTYKYYVGRKAMFD---SDFKQAEEYLSFAFEHCHRSS---QKNKRMILIYLLPVKMLLGHMPTVELLKKYH--- 79 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHSCTTC---HHHHHHHHHHHHHHHHHTTCEECHHHHHHTT---
T ss_pred CHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHCCHhH---HHHHHHHHHHHHHHHHHcCCCCCHHHhhhCc---
Confidence 3344566777877776554 458999999999888776532 2445556666766666554443344443221
Q ss_pred cccchhhhHHHHHHHHHHHhhcccchhccccchhhhhhcCCcchhHHhhhhhhhhhccCCC-----CCCCcchhhhhhcc
Q 015104 250 LENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSN-----ESGQIPYGLIKDTL 324 (413)
Q Consensus 250 L~~~~~~~~l~~LL~~f~~G~l~~f~~~~~~~~~~l~~~~l~~~~~~~KirLLaL~~L~~~-----~~r~isy~~Ia~~l 324 (413)
...+.+|..++..||+..|++..++|.+.+.+.|+. .+.+|+|.+++..++.+ ++..||+++|+.++
T Consensus 80 ------~~~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~--lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l 151 (203)
T 3t5x_A 80 ------LMQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIF--LILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVAL 151 (203)
T ss_dssp ------CGGGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCH--HHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHH
T ss_pred ------hhHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChH--HHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 124678999999999999999998888877766652 45789999988888652 26689999999999
Q ss_pred cc------CcchhhhHHhhhhhhccccccccccccEEEEecccc
Q 015104 325 QI------NNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTE 362 (413)
Q Consensus 325 ~i------~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~ 362 (413)
++ +++|||.+|.++|..|+|+|+||+.++++.++...|
T Consensus 152 ~~~~~~~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~p 195 (203)
T 3t5x_A 152 KFMQVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQNP 195 (203)
T ss_dssp HHTTCTTCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSSCS
T ss_pred HhcCCCCCCHHHHHHHHHHHHHcCceEEEEcccccEEEECCCCC
Confidence 75 678999999999999999999999999999987655
No 8
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=98.89 E-value=2.2e-09 Score=110.26 Aligned_cols=236 Identities=16% Similarity=0.132 Sum_probs=155.8
Q ss_pred cchhHHHHHHHhhhh-cC-c-----c---hhh---HHHHHHHhHhhcCccccccccchhchHHH-----HhhhccCchhh
Q 015104 115 PAMRLKILFNLYNLL-EN-P-----Y---SRF---FVYMKALNLAVNGKVTEHIIPSFKKIDSF-----LKEWNIDIKDK 176 (413)
Q Consensus 115 ~~~~l~~L~~Lfn~l-~~-~-----~---~r~---~v~~~il~~a~~~~~~~~~~~~l~~~~~~-----L~~w~~~~~~~ 176 (413)
.+.+-+++...||.. ++ + + -|. .+.-.+.++-.+-|..+.+++.++.++.- ++....+..++
T Consensus 142 le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~ 221 (455)
T 3t5v_B 142 LSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIE 221 (455)
T ss_dssp HHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEe
Confidence 344557888888863 21 1 1 222 22234455566678888888888776663 23333334456
Q ss_pred hHHHHHHHHhhhhcccCchhhHHHHHHHhhh-ccCCc-cc-hhhHHHHHHHHHHHhhhcCCCccccccCCCccccccccc
Q 015104 177 RALFLGIANVLKESRSSSKDSFKFLTKYLAT-FSGED-AH-TMDEAKEEAVRTIIEFVKSPDMFQCDLLDMPAIGQLEND 253 (413)
Q Consensus 177 ~~~y~~~~~~l~~~~~~~~~~y~~~l~yL~t-~~~~~-~~-~~~e~~~~a~~lii~aL~~~~i~~feLL~~p~v~~L~~~ 253 (413)
..||.+...+++ +++.+|+..+...+.. .+.+. .. .....+.....++...|+...+-+..++..|..
T Consensus 222 Y~YYlGr~~~~~---~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~~------ 292 (455)
T 3t5v_B 222 YRYLLGRYYLLN---SQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLS------ 292 (455)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGSC------
T ss_pred eeHHHHHHHHHH---ccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccch------
Confidence 677777666544 5689999998887775 44321 00 123344455666666555433333344443321
Q ss_pred hhhhH-HHHHHHHHHHhhcccchhccccchhhhhhcCCcchhHHhhhhhhhhhccCC--------C-CCCCcchhhhhhc
Q 015104 254 AKYAS-VYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGS--------N-ESGQIPYGLIKDT 323 (413)
Q Consensus 254 ~~~~~-l~~LL~~f~~G~l~~f~~~~~~~~~~l~~~~l~~~~~~~KirLLaL~~L~~--------~-~~r~isy~~Ia~~ 323 (413)
+...+ +.+|..++..||+..|++..++|...+.+.|+ ...++.|+|.+++-.+.. . +...||+++|+.+
T Consensus 293 ~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gi-ly~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~a 371 (455)
T 3t5v_B 293 QETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQL-LIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERV 371 (455)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHH
Confidence 23344 67899999999999999999888877765543 135567777775544322 1 1257999999999
Q ss_pred cc---------------------cCcchhhhHHhhhhhhccccccccccccEEEEecc
Q 015104 324 LQ---------------------INNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRC 360 (413)
Q Consensus 324 l~---------------------i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v 360 (413)
++ ++.+|||-+|.++|..|+|+|+||..++++.++..
T Consensus 372 L~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 372 LQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp HHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCC
T ss_pred HhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCC
Confidence 98 46789999999999999999999999999999986
No 9
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.79 E-value=1.5e-08 Score=105.11 Aligned_cols=167 Identities=11% Similarity=0.113 Sum_probs=111.8
Q ss_pred hhHHHHHHHHhhhhcccCchhhHHHHHHHhhhccCCccchhhHHHHHHH-HHHHhhhcCCCccccccCCCccccccccch
Q 015104 176 KRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAV-RTIIEFVKSPDMFQCDLLDMPAIGQLENDA 254 (413)
Q Consensus 176 ~~~~y~~~~~~l~~~~~~~~~~y~~~l~yL~t~~~~~~~~~~e~~~~a~-~lii~aL~~~~i~~feLL~~p~v~~L~~~~ 254 (413)
+..||.+...+++ ++|.+|++++...+...+.... .... +..+. .+++..|+...+-...++..|.+..
T Consensus 271 rY~YY~GRI~a~q---~~Y~eA~~~L~~A~rkap~~~~-a~gf-r~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~----- 340 (523)
T 4b4t_S 271 RYFFYLSKINAIQ---LDYSTANEYIIAAIRKAPHNSK-SLGF-LQQSNKLHCCIQLLMGDIPELSFFHQSNMQK----- 340 (523)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHTSSCSCSSS-CSHH-HHHHHHHHHHHHHHHTCCCCHHHHTTTSCHH-----
T ss_pred HHHHHHHHHHHHh---ccHHHHHHHHHHHHHhCCcchh-hhhH-HHHHHHHHHhHHhhcCCCCChHHhhchhHHH-----
Confidence 3445555444443 5588999998888876554322 1122 23343 4444444433343334444554422
Q ss_pred hhhHHHHHHHHHHHhhcccchhccccchhhhhhcCCc--ch-----hHHhhhhhhhhhccCCCCCCCcchhhhhhccccC
Q 015104 255 KYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLV--HE-----DCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQIN 327 (413)
Q Consensus 255 ~~~~l~~LL~~f~~G~l~~f~~~~~~~~~~l~~~~l~--~~-----~~~~KirLLaL~~L~~~~~r~isy~~Ia~~l~i~ 327 (413)
.-.++++|..+|..||+..|.+....|...+.+.|.- -+ .++..+|-+ ... +..||+++|+..++++
T Consensus 341 ~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irki-----s~~-YsrIsL~dIa~kL~L~ 414 (523)
T 4b4t_S 341 SLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRII-----SLT-YKKISLRDICLKLNLD 414 (523)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHS-----CCC-SSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHH-----HHH-HhcccHHHHHHHhCCC
Confidence 2357889999999999999999988888777765531 11 222333333 223 6789999999999996
Q ss_pred -cchhhhHHhhhhhhccccccccccccEEEEe
Q 015104 328 -NDEVEKWVVKARTAKLMDCKMDQMNQVVIVR 358 (413)
Q Consensus 328 -~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt 358 (413)
++++|.+|-++|..|.|+|+|||.+|.|...
T Consensus 415 s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~sk 446 (523)
T 4b4t_S 415 SEQTVEYMVSRAIRDGVIEAKINHEDGFIETT 446 (523)
T ss_dssp HSSCHHHHHHHHHHHTSSCCEECTTTCCEECC
T ss_pred CHHHHHHHHHHHHHcCCceEEEecCCCEEEeC
Confidence 6899999999999999999999999987643
No 10
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=98.27 E-value=2.2e-07 Score=73.62 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=48.3
Q ss_pred CCCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccc
Q 015104 312 SGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTE 362 (413)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~ 362 (413)
+..|+++.||+.+++++++||.++.+.|..|-|.|+|||++++|..++..|
T Consensus 28 Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~ 78 (84)
T 1ufm_A 28 YNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREA 78 (84)
T ss_dssp CSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred cCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCccc
Confidence 889999999999999999999999999999999999999999999876554
No 11
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=96.49 E-value=0.0021 Score=59.98 Aligned_cols=156 Identities=13% Similarity=0.061 Sum_probs=93.1
Q ss_pred hhHHHHHHHHhhhhcccCchhhHHHHHHHhhhccCCccc-hhhHHHHHHHHHHHhhhcCCCcccc--ccCCCcccccccc
Q 015104 176 KRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAH-TMDEAKEEAVRTIIEFVKSPDMFQC--DLLDMPAIGQLEN 252 (413)
Q Consensus 176 ~~~~y~~~~~~l~~~~~~~~~~y~~~l~yL~t~~~~~~~-~~~e~~~~a~~lii~aL~~~~i~~f--eLL~~p~v~~L~~ 252 (413)
-|.+|..-+..--+ .++. ++|.....-|.++-.+... +.....=.+++++.. |...++-.| ++-..|.-..+++
T Consensus 55 ar~vyE~~a~~al~-~~D~-~~F~~~~~qLk~~Y~~~~~~s~~~~e~~~~~LL~l-L~~~~~~ef~~~le~l~~~~~~~~ 131 (229)
T 4b0z_A 55 ARNVFEYGVLVSIQ-TCDI-ESFARYASQVIPFYHDSLVPSSRMGLVTGLNLLYL-LSENRIAEFHTALESVPDKSLFER 131 (229)
T ss_dssp HHHHHHHHHHHHHH-TTCH-HHHHHHHHHHHHHHSSCCCCCTTHHHHHHHHHHHH-HHTTCHHHHHHHHHHCSCTTHHHH
T ss_pred HHHHHHHHHHHHHH-cCCH-HHHHHHHHHHHHHHHccCCCCccHHHHHHHHHHHH-HHcCCchHHHHHHHhcChHHHhhc
Confidence 35667765555444 3444 4555554545444332221 112222345555443 444455444 2222332222344
Q ss_pred chhhhHHHHHHHHHHHhhcccchhccccchhhhhhcCCcchhHHhhhhhhhhhccCCCCCCCcchhhhhhccccC-cchh
Q 015104 253 DAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQIN-NDEV 331 (413)
Q Consensus 253 ~~~~~~l~~LL~~f~~G~l~~f~~~~~~~~~~l~~~~l~~~~~~~KirLLaL~~L~~~~~r~isy~~Ia~~l~i~-~~eV 331 (413)
++--....++-.++..|++..|.....+.|.... +.-.+.+..++|.-++..++.. +..||.+++++.|+.+ ++|+
T Consensus 132 ~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~~--~~~~~~l~~~vR~~~l~~i~ka-Y~~i~l~~~~~~L~f~s~~e~ 208 (229)
T 4b0z_A 132 DPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEF--SYFMKIVMSMVRNEIATCAEKV-YSEIPLSNATSLLYLENTKET 208 (229)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGGG--HHHHHHHHHHHHHHHHHHHHHH-CSEEEHHHHHHHTTCSSHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHhcCccchH--HHHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHhCCCCHHHH
Confidence 4444567789999999999999887655442110 1113456788998888888776 7899999999999997 5789
Q ss_pred hhHHhh
Q 015104 332 EKWVVK 337 (413)
Q Consensus 332 E~lvi~ 337 (413)
+.++-+
T Consensus 209 ~~f~~~ 214 (229)
T 4b0z_A 209 EKLAEE 214 (229)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999887
No 12
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.00 E-value=0.17 Score=48.29 Aligned_cols=160 Identities=11% Similarity=0.087 Sum_probs=90.4
Q ss_pred hhhHHHHHHHHhhhhcccCchhhHHHHHHHhhhccC--Cccc-hhhHHHHHHHHHHHhhhcCCCcccc--ccCCCccc-c
Q 015104 175 DKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSG--EDAH-TMDEAKEEAVRTIIEFVKSPDMFQC--DLLDMPAI-G 248 (413)
Q Consensus 175 ~~~~~y~~~~~~l~~~~~~~~~~y~~~l~yL~t~~~--~~~~-~~~e~~~~a~~lii~aL~~~~i~~f--eLL~~p~v-~ 248 (413)
..|.+|..-+.+--+ .++..+|-++....-..|.. ..++ +.....=.++++.- .|...++-.| +|-.+|.. .
T Consensus 57 ~ar~v~E~~a~~si~-~~D~~~F~~~~~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLy-lL~~n~~~efh~~Le~L~~~~~ 134 (274)
T 4b4t_T 57 ITKRILEVGALASIQ-TFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLN-LLSQNNTTKFHSELQYLDKHIK 134 (274)
T ss_dssp ----CHHHHHHCCSS-CSSHHHHHHHHHHHHHHTTTTSSCSSCSHHHHHHHHHHHHH-HHHHHCSTHHHHHHHSSSCSSS
T ss_pred HHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHH-HHHcCCHHHHHHHHHhcchhhH
Confidence 345677776666555 35655544444333333321 1111 11222223444433 2222334345 34344543 3
Q ss_pred ccccchhhhHHHHHHHHHHHhhcccchhccccchhhhhhcCCcchhHHhhhhhhhhhccCCCCCCCcchhhhhhccccCc
Q 015104 249 QLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQINN 328 (413)
Q Consensus 249 ~L~~~~~~~~l~~LL~~f~~G~l~~f~~~~~~~~~~l~~~~l~~~~~~~KirLLaL~~L~~~~~r~isy~~Ia~~l~i~~ 328 (413)
.+++++--..-.++-.++..|++..|.+...+.|..-..++.--+.+..++|.-++..++.. ++.+|.+++++.|+.+.
T Consensus 135 ~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p~~~~~~f~d~l~~~iR~~a~~~i~ka-Y~~i~l~~~~~~L~F~s 213 (274)
T 4b4t_T 135 NLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELS-YDFLPLSNIKALLFFNN 213 (274)
T ss_dssp TTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH-CSSCCHHHHHHHHTCCS
T ss_pred hHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCHHHHHHHhCCCC
Confidence 45555445566788999999999998765443221100111113456789999999988877 88999999999999974
Q ss_pred -chhhhHHhh
Q 015104 329 -DEVEKWVVK 337 (413)
Q Consensus 329 -~eVE~lvi~ 337 (413)
+|+..++-+
T Consensus 214 ~~e~~~F~~~ 223 (274)
T 4b4t_T 214 EKETEKFALE 223 (274)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 688888765
No 13
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=82.27 E-value=1.3 Score=36.10 Aligned_cols=73 Identities=5% Similarity=0.132 Sum_probs=44.1
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccccccchhhHHHHHhhh----hhhhhhHHHHH
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKL----STWRANVANVI 388 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~R~~~~~q~~~L~~rL----~~W~~~v~~~~ 388 (413)
+.++..+|++.+|++..-|-.-+-.....|+|..+-+.......+ . .+.+..+..-+ ..|...+..+.
T Consensus 30 ~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l---~-----~~~~~~l~~~~~~~~~~~~~~l~~l~ 101 (118)
T 3f6o_A 30 GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAI---E-----KEPFTAVEAWLAEQQELWESRTDRLE 101 (118)
T ss_dssp CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE---C-----SHHHHHHHHHHHHHHHHHHTCC----
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEE---C-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999998876632222222 2 23333333333 35666666666
Q ss_pred HHhhh
Q 015104 389 STIQA 393 (413)
Q Consensus 389 ~~v~~ 393 (413)
..+++
T Consensus 102 ~~l~~ 106 (118)
T 3f6o_A 102 QFVTE 106 (118)
T ss_dssp -----
T ss_pred HHHhc
Confidence 66665
No 14
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=81.85 E-value=0.4 Score=36.22 Aligned_cols=48 Identities=6% Similarity=0.070 Sum_probs=44.5
Q ss_pred CCCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEec
Q 015104 312 SGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRR 359 (413)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~ 359 (413)
.+.++.+++|.++++...++-.-|-.....|.|.|-||...+-|+|+-
T Consensus 19 ~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~ 66 (72)
T 1wi9_A 19 SKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITP 66 (72)
T ss_dssp CSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCC
T ss_pred cCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecH
Confidence 689999999999999999998999999999999999999998888874
No 15
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=80.06 E-value=2.1 Score=34.08 Aligned_cols=81 Identities=15% Similarity=0.223 Sum_probs=56.6
Q ss_pred hhhhhhhhhccCCCCCCCcchhhhhhcc-ccCcchhhhHHhhhhhhccccccccccccEEEEecccccccchhhHHHHHh
Q 015104 297 AKMRLMSLVDLGSNESGQIPYGLIKDTL-QINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRT 375 (413)
Q Consensus 297 ~KirLLaL~~L~~~~~r~isy~~Ia~~l-~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~R~~~~~q~~~L~~ 375 (413)
.+-|+.-|..|. . +.+++.+|++.+ +++..-|=..|=+....|+|+.+.+..++....-+.+++ |.+ ....-.
T Consensus 13 ~~~~~~IL~~L~-~--~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~--G~~-l~~~~~ 86 (107)
T 2hzt_A 13 GKWKXVILXHLT-H--GKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEY--GRS-LEGILD 86 (107)
T ss_dssp STTHHHHHHHHT-T--CCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTT--GGG-GHHHHH
T ss_pred CccHHHHHHHHH-h--CCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECcc--HHH-HHHHHH
Confidence 455544444443 2 468999999999 999999999999999999999999887766555555554 222 233344
Q ss_pred hhhhhhhh
Q 015104 376 KLSTWRAN 383 (413)
Q Consensus 376 rL~~W~~~ 383 (413)
.+..|.+.
T Consensus 87 ~l~~w~~~ 94 (107)
T 2hzt_A 87 MLXAWGAN 94 (107)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55666543
No 16
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=71.06 E-value=15 Score=33.64 Aligned_cols=122 Identities=12% Similarity=0.173 Sum_probs=75.0
Q ss_pred ccchhhhHHHHHHHHHHHhhcccchhccccchhhhhhcCCcchhHHhhhhhhhhhccCCCCCCCcchhhhhhccc-cCcc
Q 015104 251 ENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQ-INND 329 (413)
Q Consensus 251 ~~~~~~~~l~~LL~~f~~G~l~~f~~~~~~~~~~l~~~~l~~~~~~~KirLLaL~~L~~~~~r~isy~~Ia~~l~-i~~~ 329 (413)
+.++.-..+..|=..+-+|++..|-+...+.++++....--.+.++ -++..+++.+ +++|+.+.+++-|| ++++
T Consensus 94 ~~~~~I~~i~~L~~~L~~~~y~~fW~~l~~~~~l~~~i~gf~dsIR--~~I~~~i~~a---Y~sI~~~~la~lLg~~s~~ 168 (226)
T 1rz4_A 94 QEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVR--KFICHVVGIT---YQHIDRWLLAEMLGDLSDS 168 (226)
T ss_dssp HTSTTHHHHHHHHHHHHTTCHHHHHHHSCTTCHHHHTSTTHHHHHH--HHHHHHHHHH---CSEECHHHHHHHTTSCCHH
T ss_pred hcCHHHHHHHHHHHHHHcCCHHHHHHHHhcChhHHHHHhHHHHHHH--HHHHHHHHHH---HhhCCHHHHHHHHcCCCHH
Confidence 3445667778888889999999887766665555543210122222 2344444444 56899999999995 8889
Q ss_pred hhhhHHhhhhhhccccccccccccEEEEecccccccchhhHHHHHhhhhhhhhhHHHHHHHhhh
Q 015104 330 EVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRANVANVISTIQA 393 (413)
Q Consensus 330 eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~R~~~~~q~~~L~~rL~~W~~~v~~~~~~v~~ 393 (413)
+++.|+-+- |.--..+|.|.+ ..|-+..+.+--..+=..+++...|..
T Consensus 169 el~~fi~~~-------GW~vd~~g~I~~---------~n~e~~~k~~~~~E~i~~~~~~~~~~~ 216 (226)
T 1rz4_A 169 QLKVWMSKY-------GWSADESGQIFI---------CSQEESIKPKNIVEKIDFDSVSSIMAS 216 (226)
T ss_dssp HHHHHHHHH-------TCEECC--CEEC---------CCHHHHTSCCCSSCCCCHHHHHHHHCC
T ss_pred HHHHHHHHC-------CCEECCCccEEe---------CCCcccccceeeeecccHHHHHHHHHH
Confidence 999999872 442223343333 334446666666666666666666654
No 17
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=70.80 E-value=2.7 Score=34.52 Aligned_cols=76 Identities=9% Similarity=0.245 Sum_probs=57.4
Q ss_pred cchhhhhhccccCcchhhhHHhhhhhhccccccccccc--cEEEEecccccccchhhHHHHHhhhhhhhhhHHHHHHHhh
Q 015104 315 IPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMN--QVVIVRRCTERVFGQHQWQTLRTKLSTWRANVANVISTIQ 392 (413)
Q Consensus 315 isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~--~~v~vt~v~~R~~~~~q~~~L~~rL~~W~~~v~~~~~~v~ 392 (413)
+|-.+||+.++++..-|-..|=+....|+|...-+..+ +..++-.+.+ ..+-.+.++..+..|.+.+...++.+.
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~~---~~~~~~~i~~~~~~~~~~~~~~l~~~~ 119 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIYS---KNQIRNIIQKIVQSWADRLGQELKEWE 119 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECC---HHHHHHHHHHHHHHHHHHHHHTTTTTC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecCC---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999987655432 2333333322 234467788899999999888776654
Q ss_pred h
Q 015104 393 A 393 (413)
Q Consensus 393 ~ 393 (413)
+
T Consensus 120 ~ 120 (123)
T 3r0a_A 120 N 120 (123)
T ss_dssp C
T ss_pred c
Confidence 3
No 18
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=69.31 E-value=2 Score=32.49 Aligned_cols=49 Identities=6% Similarity=0.081 Sum_probs=38.5
Q ss_pred hhhhhhhccCCCCCCCcchhhhhhccccCcchhhhHHhhhhhhccccccc
Q 015104 299 MRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKM 348 (413)
Q Consensus 299 irLLaL~~L~~~~~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkI 348 (413)
.+++.++.--.. ...+|+.+||+.++++...|...|=+....|+|.+.-
T Consensus 17 ~~IL~~L~~~~~-~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g 65 (77)
T 1qgp_A 17 QRILKFLEELGE-GKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHHCS-SSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHcCC-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC
Confidence 345554443332 3579999999999999999999999999999997764
No 19
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=66.78 E-value=2.8 Score=36.48 Aligned_cols=69 Identities=7% Similarity=0.144 Sum_probs=47.1
Q ss_pred CCCcchhhhhhccccCcchhhhHHhhhhhhcccccc---ccccc--c-EEEEec-ccc---cccchhhHHHHHhhhhhh
Q 015104 312 SGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCK---MDQMN--Q-VVIVRR-CTE---RVFGQHQWQTLRTKLSTW 380 (413)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gk---IDQv~--~-~v~vt~-v~~---R~~~~~q~~~L~~rL~~W 380 (413)
+..+|+.+||+.+|++...|-..+-+....|+|++. +|... . .+.|.. +.+ +.|+.+..+.+.+.|..+
T Consensus 29 ~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~~lG~~~a~v~v~~~~~~~~~f~~~~~~~~~~~l~~~ 107 (171)
T 2ia0_A 29 DARLTISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQLKPKHLALIVLEVGKPVIEDFLERYISYISSTLSAL 107 (171)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTTTSCSEEEEEEEEESCC--CHHHHHHHHHHHHHHHTS
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHHHhhcceEEEEEEECCccccccchhHHHHHHHHHHCC
Confidence 356999999999999999999999999999999764 33321 1 233222 222 345555666666666554
No 20
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=65.08 E-value=6.7 Score=31.62 Aligned_cols=50 Identities=8% Similarity=0.151 Sum_probs=41.0
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTE 362 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~ 362 (413)
..++..+|++.++++..-|-..|=+....|+|.-.-|..++....-..++
T Consensus 42 ~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~ 91 (138)
T 3bpv_A 42 PGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTR 91 (138)
T ss_dssp TTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECH
Confidence 56899999999999999999999999999999988777666544433333
No 21
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=64.42 E-value=1.6 Score=33.31 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=35.1
Q ss_pred hhhhhccCCCCCCCcchhhhhhccccCcchhhhHHhhhhhhccc
Q 015104 301 LMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLM 344 (413)
Q Consensus 301 LLaL~~L~~~~~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI 344 (413)
|..++++... .+.++.++||+.|++++.-|..-+-+....|+|
T Consensus 4 L~~Il~~L~~-~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 4 LIQVRDLLAL-RGRMEAAQISQTLNTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp HHHHHHHHHH-SCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHH-cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 3344455544 578999999999999999999999999888877
No 22
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=61.56 E-value=5.8 Score=32.69 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=31.7
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhcccccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCK 347 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gk 347 (413)
..+|+.+||+.+|++..-|-..+-+....|+|++.
T Consensus 17 ~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 17 ARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 46899999999999999999999999999999865
No 23
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=61.55 E-value=8 Score=30.85 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=50.0
Q ss_pred CCcchhhhhhcc-ccCcchhhhHHhhhhhhccccccccccccEEEEecccccccchhhHHHHHhhhhhhhhhH
Q 015104 313 GQIPYGLIKDTL-QINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRANV 384 (413)
Q Consensus 313 r~isy~~Ia~~l-~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~R~~~~~q~~~L~~rL~~W~~~v 384 (413)
+.+++.+|++.+ +++..-|-..|=+....|+|..+-+..++....-..++. |.+ ....-..+..|....
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~--G~~-~~~~~~~l~~w~~~~ 103 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPE--GYA-LYDALSSLCHWGETF 103 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHH--HHH-HHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHh--HHH-HHHHHHHHHHHHHHH
Confidence 468999999999 999999999999999999999998877666555555553 222 222223456665543
No 24
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=61.46 E-value=4.3 Score=34.28 Aligned_cols=47 Identities=19% Similarity=0.146 Sum_probs=38.5
Q ss_pred CCCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEec
Q 015104 312 SGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRR 359 (413)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~ 359 (413)
.+.+|-++||+.+++|...|+..+-+.-.+|+|..+ -..+|-....+
T Consensus 26 ~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~-rG~~GGy~Lar 72 (143)
T 3t8r_A 26 QGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSV-RGAKGGYQLRV 72 (143)
T ss_dssp SCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC-SSSSSEEEESS
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEec-CCCCCCeeecC
Confidence 357999999999999999999999999999999754 33455566554
No 25
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=60.91 E-value=6.3 Score=31.18 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=55.0
Q ss_pred hhhhhhhhhccCCCCCCCcchhhhhhccc-cCcchhhhHHhhhhhhccccccccccccEEEEecccccccchhhHHHHHh
Q 015104 297 AKMRLMSLVDLGSNESGQIPYGLIKDTLQ-INNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRT 375 (413)
Q Consensus 297 ~KirLLaL~~L~~~~~r~isy~~Ia~~l~-i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~R~~~~~q~~~L~~ 375 (413)
.+-|+.-|..|. . +.++|.+|++.++ ++..-|-..+=+....|+|+.+.+..++....-+.++. |.+-. ..-.
T Consensus 24 ~~~~~~IL~~L~-~--~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~--G~~l~-~~l~ 97 (107)
T 2fsw_A 24 GKWTLLIIFQIN-R--RIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPL--GEKVL-PIID 97 (107)
T ss_dssp SSSHHHHHHHHT-T--SCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHH--HHTTH-HHHH
T ss_pred CccHHHHHHHHH-h--CCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECcc--HHHHH-HHHH
Confidence 455544444444 2 5689999999994 99999999999999999999988877666555555554 22222 2233
Q ss_pred hhhhhhh
Q 015104 376 KLSTWRA 382 (413)
Q Consensus 376 rL~~W~~ 382 (413)
.+..|.+
T Consensus 98 ~l~~w~~ 104 (107)
T 2fsw_A 98 EIAKFGM 104 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5566653
No 26
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=60.63 E-value=4 Score=31.23 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=33.3
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhcccccccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMD 349 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkID 349 (413)
+.+++.+|++.++++..-|-..+-+....|+|...-+
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~ 65 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKV 65 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 5689999999999999999999999999999987653
No 27
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=60.26 E-value=8.5 Score=31.28 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=40.7
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEeccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCT 361 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~ 361 (413)
+.++..+|++.++++..-|-..|=+....|+|.-.-|..++....-..+
T Consensus 46 ~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT 94 (145)
T 2a61_A 46 GPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVIT 94 (145)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEEC
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCceEEEEEC
Confidence 4689999999999999999999999999999998887766655443333
No 28
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=60.20 E-value=1.8 Score=33.81 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=36.2
Q ss_pred hhhhhccCCCCCCCcchhhhhhccccCcchhhhHHhhhhhhccccc
Q 015104 301 LMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDC 346 (413)
Q Consensus 301 LLaL~~L~~~~~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~g 346 (413)
|..++++... .+.++.++||+.|+|++.-|..-+-+....|+|.=
T Consensus 4 L~~Il~~L~~-~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R 48 (87)
T 2k02_A 4 LMEVRDMLAL-QGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVR 48 (87)
T ss_dssp THHHHHHHHH-SCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHHHH-cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3344444444 57899999999999999999999999999998754
No 29
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=59.86 E-value=4.1 Score=31.26 Aligned_cols=57 Identities=5% Similarity=0.060 Sum_probs=40.2
Q ss_pred hhhhhhccCCCCCCCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEe
Q 015104 300 RLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVR 358 (413)
Q Consensus 300 rLLaL~~L~~~~~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt 358 (413)
+++.++.-... ...+|..+||+.||++...|...+-+.-..|+|.-. +...+.-.+.
T Consensus 14 ~IL~~L~~~~p-g~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~-g~~~~~W~i~ 70 (81)
T 1qbj_A 14 RILKFLEELGE-GKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE-AGTPPLWKIA 70 (81)
T ss_dssp HHHHHHHHHCT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-SSSSCEEEEC
T ss_pred HHHHHHHHcCC-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec-CCCCCeeEEe
Confidence 34454442221 347999999999999999999999999999998532 2333444444
No 30
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=59.83 E-value=11 Score=31.39 Aligned_cols=39 Identities=8% Similarity=0.147 Sum_probs=34.6
Q ss_pred CCCcchhhhhhccccCcchhhhHHhhhhhhccccc---cccc
Q 015104 312 SGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDC---KMDQ 350 (413)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~g---kIDQ 350 (413)
+..+|+.+||+.+|++...|-..+-+....|+|++ .+|.
T Consensus 15 ~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~ 56 (150)
T 2pn6_A 15 NAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINP 56 (150)
T ss_dssp CTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCG
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCH
Confidence 35799999999999999999999999999999987 4554
No 31
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=59.49 E-value=9.1 Score=31.10 Aligned_cols=42 Identities=10% Similarity=0.128 Sum_probs=36.6
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccE
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQV 354 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~ 354 (413)
..++..+|++.++++..-|-..|=+....|+|.-.-|..++.
T Consensus 42 ~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R 83 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKK 83 (144)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTT
T ss_pred cCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCc
Confidence 468999999999999999999999999999999877665543
No 32
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=58.70 E-value=4.8 Score=34.86 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=38.1
Q ss_pred CCCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEec
Q 015104 312 SGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRR 359 (413)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~ 359 (413)
.+.+|-++||+.+++|...|+..+-+.-++|+|..+ -..+|-....+
T Consensus 42 ~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~-rG~~GGy~Lar 88 (159)
T 3lwf_A 42 DGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSI-RGAHGGYVLNG 88 (159)
T ss_dssp SCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-CSTTCEEEECS
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe-cCCCCceEecC
Confidence 457999999999999999999999999999999755 33345555553
No 33
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=58.70 E-value=5.4 Score=32.66 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=41.7
Q ss_pred hhhhhhhhccCCCCCCCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEec
Q 015104 298 KMRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRR 359 (413)
Q Consensus 298 KirLLaL~~L~~~~~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~ 359 (413)
=+++|.++...+. .+.+|-.+||+.+++|..-|+..+-..-..|+|...= ..++.....+
T Consensus 11 al~iL~~la~~~~-~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~-g~~ggy~L~~ 70 (129)
T 2y75_A 11 GLTIMIELAKKHG-EGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIR-GAYGGYVLGS 70 (129)
T ss_dssp HHHHHHHHHHTTT-SCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC-----CCEEESS
T ss_pred HHHHHHHHHhCCC-CCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecC-CCCCceEeCC
Confidence 3455554433332 4679999999999999999999999999999997542 2334455543
No 34
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=58.44 E-value=8.7 Score=31.83 Aligned_cols=82 Identities=10% Similarity=0.139 Sum_probs=57.9
Q ss_pred HhhhhhhhhhccCCCCCCCcchhhhhhcc-ccCcchhhhHHhhhhhhccccccccccccEEEEecccccccchhhHHHHH
Q 015104 296 IAKMRLMSLVDLGSNESGQIPYGLIKDTL-QINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLR 374 (413)
Q Consensus 296 ~~KirLLaL~~L~~~~~r~isy~~Ia~~l-~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~R~~~~~q~~~L~ 374 (413)
-.+-+++-|..|. . +.++|.+|++.+ +|+..-|=..|=+.-..|+|.-+.+..++....-+.+++ |.+-+ ..-
T Consensus 33 ~~~w~l~IL~~L~-~--g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~--G~~l~-~~l 106 (131)
T 1yyv_A 33 TSRWGVLILVALR-D--GTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPL--GEQVS-DXV 106 (131)
T ss_dssp HSHHHHHHHHHGG-G--CCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHH--HHHHH-HHH
T ss_pred cCCcHHHHHHHHH-c--CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECcc--HHHHH-HHH
Confidence 3566655555554 2 568999999999 799999999999999999999988877766555555554 33322 233
Q ss_pred hhhhhhhhh
Q 015104 375 TKLSTWRAN 383 (413)
Q Consensus 375 ~rL~~W~~~ 383 (413)
..+..|...
T Consensus 107 ~~l~~w~~~ 115 (131)
T 1yyv_A 107 AALADWIEL 115 (131)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445677553
No 35
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=58.36 E-value=17 Score=28.44 Aligned_cols=37 Identities=8% Similarity=0.134 Sum_probs=33.2
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhcccccccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMD 349 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkID 349 (413)
+.++..+|++.++++..-|-..+-.....|+|...-+
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 4689999999999999999999999999999987644
No 36
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=58.36 E-value=12 Score=31.81 Aligned_cols=36 Identities=3% Similarity=0.106 Sum_probs=32.9
Q ss_pred CCCcchhhhhhccccCcchhhhHHhhhhhhcccccc
Q 015104 312 SGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCK 347 (413)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gk 347 (413)
+..+||.+||+.+|++...|-.-+-+....|+|+|.
T Consensus 15 ~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 15 DSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp CSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCC
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeec
Confidence 467899999999999999999999999999999863
No 37
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=58.15 E-value=13 Score=31.56 Aligned_cols=72 Identities=10% Similarity=0.173 Sum_probs=51.3
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccccccchhhHHHHHhhhh-hhhhhHHHHHHHh
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLS-TWRANVANVISTI 391 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~R~~~~~q~~~L~~rL~-~W~~~v~~~~~~v 391 (413)
+.++..+|++.++++..-|=.-+-.....|+|..+-+....... ++.+.+..+.+.+. -|...+..+...+
T Consensus 70 ~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~--------lt~~~~~~l~~~l~~~~~~~l~~l~~~l 141 (151)
T 3f6v_A 70 GEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYR--------LDPQGLAQLRALFDSFWIDELDRLVADA 141 (151)
T ss_dssp CCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEE--------ECHHHHHHHHHHHHHHSCHHHHHHHHHC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEE--------EChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999887543332222 23455556666555 4666666666555
Q ss_pred h
Q 015104 392 Q 392 (413)
Q Consensus 392 ~ 392 (413)
.
T Consensus 142 ~ 142 (151)
T 3f6v_A 142 T 142 (151)
T ss_dssp C
T ss_pred h
Confidence 4
No 38
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=57.93 E-value=9.1 Score=31.13 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=36.4
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccE
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQV 354 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~ 354 (413)
+.++..+||+.++++..-|-..|=+....|+|.-.-|..++.
T Consensus 49 ~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r 90 (146)
T 2gxg_A 49 GPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRR 90 (146)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTT
T ss_pred CCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCc
Confidence 468999999999999999999999999999998777655443
No 39
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=57.30 E-value=5.5 Score=30.75 Aligned_cols=45 Identities=11% Similarity=0.170 Sum_probs=37.3
Q ss_pred hhhhhhhhhccCCCCCCCcchhhhhhccccCcchhhhHHhhhhhhccccc
Q 015104 297 AKMRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDC 346 (413)
Q Consensus 297 ~KirLLaL~~L~~~~~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~g 346 (413)
.+.++|.++. . +. +|+.+||+++||+...|-..+-+.-..|+|.-
T Consensus 18 ~~~~IL~lL~---~-~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 18 IVCEAIKTIG---I-EG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp HHHHHHHHHS---S-ST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHHHHHHH---H-cC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 4666676665 2 34 99999999999999999999999989999865
No 40
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=56.99 E-value=36 Score=30.82 Aligned_cols=147 Identities=12% Similarity=-0.011 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHhhhhhhhhccCCC-Cc---chhheeeehhcccCCCChhHHHHHHHHHHhhhhcC
Q 015104 35 EQVNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKVSD-KD---LECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQ 110 (413)
Q Consensus 35 ~e~~~~~~~~e~l~~~klw~qLt~~l~~~~~~~~~~~~d-ke---~e~~~n~i~~lv~~~~~~~~~l~~v~~l~~~~~~~ 110 (413)
+....+..+++.++..+.+.+....+.. .....+. .+ +-..++.+..+.....+.++++...+....... .
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~----~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~-~ 147 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWN----ELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL-T 147 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHH----HHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC-C
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHH----HhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc-c
Confidence 3455566678888888888877765433 2222111 11 111233233333333456667665554443211 1
Q ss_pred CCCCcc---hhHHHHHHHhhhhcCcchhhHHHHHHHhHhhcCccccccccchhchHHHHhhhccCchhhhHHHHHHHHhh
Q 015104 111 PNDKPA---MRLKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVL 187 (413)
Q Consensus 111 ~~~~~~---~~l~~L~~Lfn~l~~~~~r~~v~~~il~~a~~~~~~~~~~~~l~~~~~~L~~w~~~~~~~~~~y~~~~~~l 187 (413)
. .... ..+..|+.+|... |+++.....++++-+.+.+.+........+|..++.++
T Consensus 148 ~-~~~~~~~~~~~~lg~~y~~~--------------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y 206 (293)
T 3u3w_A 148 G-IDVYQNLYIENAIANIYAEN--------------------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL 206 (293)
T ss_dssp C-SCTTHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred c-ccHHHHHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 1 1111 1233444444433 34444444444333333333234455666777888888
Q ss_pred hhcccCchhhHHHHHHHhhhc
Q 015104 188 KESRSSSKDSFKFLTKYLATF 208 (413)
Q Consensus 188 ~~~~~~~~~~y~~~l~yL~t~ 208 (413)
.. .|++++|..++-+.+...
T Consensus 207 ~~-~~~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 207 YL-DSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HH-TTCHHHHHHHHHHHHHHH
T ss_pred HH-HhHHHHHHHHHHHHHHHH
Confidence 77 477888888877777654
No 41
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=56.70 E-value=4.9 Score=31.02 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=47.2
Q ss_pred CCCcchhhhhhccccCcchhhhHHhhhhhhcccccccccccc---EEEEecccccccchhhHHHHHhhhhhhhhhHH
Q 015104 312 SGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQ---VVIVRRCTERVFGQHQWQTLRTKLSTWRANVA 385 (413)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~---~v~vt~v~~R~~~~~q~~~L~~rL~~W~~~v~ 385 (413)
.+.++..+||+.++++..-|-..+=.....|+|...-+..++ ...... ++.+-++.+...+..|.+.+.
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~~~gr~~~~~~-----l~~~~~~~~~~~~~~~~~~~~ 105 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYS-----ISSNILEKIRNDLLNCAKRME 105 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEE-----ECTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccCCCCCCCeeee-----cCHHHHHHHHHHHHHHHHHHh
Confidence 356999999999999999999999999999999876554331 111111 223556666677777766554
No 42
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=55.95 E-value=9.4 Score=31.04 Aligned_cols=57 Identities=11% Similarity=0.043 Sum_probs=43.1
Q ss_pred hhhhhhhccCCCCCCCcchhhhhhccccCcchhhhHHhhhhhhcccccccccccc-EEEEe
Q 015104 299 MRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQ-VVIVR 358 (413)
Q Consensus 299 irLLaL~~L~~~~~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~-~v~vt 358 (413)
.+++.++.+. .+.+|..+||+.++++..-|=..|=+....|+|.-.-|..++ .+.++
T Consensus 29 ~~il~~L~~~---~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~ 86 (152)
T 1ku9_A 29 GAVYAILYLS---DKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEA 86 (152)
T ss_dssp HHHHHHHHHC---SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEE
T ss_pred HHHHHHHHHc---CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCceEEEee
Confidence 4455555322 246999999999999999999999999999999987766554 33443
No 43
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=55.21 E-value=6.5 Score=32.93 Aligned_cols=36 Identities=11% Similarity=0.263 Sum_probs=32.5
Q ss_pred CCCcchhhhhhccccCcchhhhHHhhhhhhcccccc
Q 015104 312 SGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCK 347 (413)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gk 347 (413)
+..+|+.+||+.+|++..-|-..+-+....|+|.+.
T Consensus 21 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 21 NSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp CTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 357999999999999999999999999999999764
No 44
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=54.71 E-value=11 Score=30.97 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=34.0
Q ss_pred CCCcchhhhhhccccCcchhhhHHhhhhhhccccc--cccccccEEEEe
Q 015104 312 SGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDC--KMDQMNQVVIVR 358 (413)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~g--kIDQv~~~v~vt 358 (413)
.+.+|..+||+.++++..-|=..|=+....|+|.- ..|..++....-
T Consensus 49 ~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~ 97 (151)
T 3kp7_A 49 IEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKII 97 (151)
T ss_dssp HSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCB
T ss_pred cCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEE
Confidence 46799999999999999999999999999999997 347666654433
No 45
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=54.65 E-value=5.2 Score=33.71 Aligned_cols=55 Identities=13% Similarity=0.210 Sum_probs=40.7
Q ss_pred hhhhhccCCCCCCCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEec
Q 015104 301 LMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRR 359 (413)
Q Consensus 301 LLaL~~L~~~~~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~ 359 (413)
+.+|+.|+.... . |-++||+.++||...++.++-+.-.+|+|...=. +|-....+
T Consensus 12 l~~L~~La~~~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG--~GGy~Lar 66 (145)
T 1xd7_A 12 IHILSLISMDEK-T-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG--VPGASLKK 66 (145)
T ss_dssp HHHHHHHHTCSC-C-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS--SSSCEESS
T ss_pred HHHHHHHHhCCC-C-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC--CCCceecC
Confidence 344444454323 4 9999999999999999999999999999986543 44444443
No 46
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=54.37 E-value=8.1 Score=31.84 Aligned_cols=62 Identities=8% Similarity=0.064 Sum_probs=43.7
Q ss_pred hcCCcchhHHhhhhhhhhhccCCCCCCCcchhhhhhccccCcchhhhHHhhhhhhcccccccccc
Q 015104 287 SYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQM 351 (413)
Q Consensus 287 ~~~l~~~~~~~KirLLaL~~L~~~~~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv 351 (413)
.+|+.+..+. -++.|..+...+..-+|.++||+.++++..+|-..+=+.+..|+|.=+-+..
T Consensus 27 ~lgLt~~e~~---vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~ 88 (128)
T 2vn2_A 27 QLGLGEGELV---LLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHTD 88 (128)
T ss_dssp TTTCCHHHHH---HHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC---
T ss_pred HcCCCHHHHH---HHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEEC
Confidence 3456555443 4555555433323348999999999999999999999999999997665543
No 47
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=54.00 E-value=4.7 Score=35.07 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=32.7
Q ss_pred CCCcchhhhhhccccCcchhhhHHhhhhhhcccccc
Q 015104 312 SGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCK 347 (413)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gk 347 (413)
+..+|+.+||+.+|++...|-..+-+....|+|++.
T Consensus 39 ~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 39 DGKAPLREISKITGLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 357999999999999999999999999999999874
No 48
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=53.90 E-value=6.5 Score=33.97 Aligned_cols=58 Identities=7% Similarity=0.054 Sum_probs=42.2
Q ss_pred hhhhhhhccCCCCCCCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEec
Q 015104 299 MRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRR 359 (413)
Q Consensus 299 irLLaL~~L~~~~~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~ 359 (413)
+|+|.++.. ...+.+|-++||+.++||...|+..+-+.-.+|+|+.+ -..+|-....+
T Consensus 15 lr~l~~La~--~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~-rG~~GGy~Lar 72 (162)
T 3k69_A 15 VHSILYLDA--HRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGT-VGKNGGYQLDL 72 (162)
T ss_dssp HHHHHHHHT--TTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEE-CSTTCEEECCS
T ss_pred HHHHHHHHh--CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee-cCCCCCeEecC
Confidence 444444433 22457999999999999999999999999999999643 33455555544
No 49
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=53.30 E-value=12 Score=30.93 Aligned_cols=46 Identities=7% Similarity=0.128 Sum_probs=33.5
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEe
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVR 358 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt 358 (413)
..++..+||+.++++..-|=..|=+....|+|.-+-|..++....-
T Consensus 54 ~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~ 99 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLII 99 (149)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeee
Confidence 5689999999999999999999999999999998887766654433
No 50
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=53.00 E-value=9.4 Score=32.03 Aligned_cols=50 Identities=10% Similarity=0.056 Sum_probs=41.6
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTE 362 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~ 362 (413)
..++..+||+.++++..-|=..|=+....|+|.-.-|..++....-..++
T Consensus 59 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~ 108 (162)
T 3k0l_A 59 PNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTP 108 (162)
T ss_dssp TTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECH
Confidence 46999999999999999999999999999999998887776544444443
No 51
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=52.74 E-value=11 Score=28.75 Aligned_cols=38 Identities=11% Similarity=0.096 Sum_probs=34.8
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQ 350 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQ 350 (413)
+.++..+|++.++++..-|-..+=+....|+|...-+.
T Consensus 33 ~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 33 GGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVE 70 (109)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeec
Confidence 46899999999999999999999999999999987665
No 52
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=51.40 E-value=4.9 Score=33.60 Aligned_cols=36 Identities=6% Similarity=0.133 Sum_probs=32.8
Q ss_pred CCCcchhhhhhccccCcchhhhHHhhhhhhcccccc
Q 015104 312 SGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCK 347 (413)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gk 347 (413)
+..+|+.+||+.+|++..-|-..+-+....|+|++.
T Consensus 17 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 17 DSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 356999999999999999999999999999999864
No 53
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=51.26 E-value=5.5 Score=33.50 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=32.6
Q ss_pred CCCcchhhhhhccccCcchhhhHHhhhhhhcccccc
Q 015104 312 SGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCK 347 (413)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gk 347 (413)
+..+|+.+||+.+|++..-|-..+-+....|+|++.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 19 DGKAPLREISKITGLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp CTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 357999999999999999999999999999999764
No 54
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=51.21 E-value=13 Score=29.45 Aligned_cols=62 Identities=8% Similarity=0.040 Sum_probs=45.6
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccccccchhhHHHHHhhhhhhhh
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRA 382 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~R~~~~~q~~~L~~rL~~W~~ 382 (413)
+.+++.+|++.++++..-|-..+-.....|+|..+-+.. .+.. .++.+.+..+.+.|..|..
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr--~~~y------~l~~~~~~~l~~~l~~~~~ 98 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSGGLVEARREGT--RQYY------RIAGEDVARLFALVQVVAD 98 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETT--EEEE------EESCHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCC--EEEE------EEChHHHHHHHHHHHHHhh
Confidence 568999999999999999999999999999998764322 2211 2334556677777776653
No 55
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=51.20 E-value=5.8 Score=30.48 Aligned_cols=38 Identities=8% Similarity=0.033 Sum_probs=33.3
Q ss_pred CcchhhhhhccccCcch-hhhHHhhhhhhcccccccccccc
Q 015104 314 QIPYGLIKDTLQINNDE-VEKWVVKARTAKLMDCKMDQMNQ 353 (413)
Q Consensus 314 ~isy~~Ia~~l~i~~~e-VE~lvi~aI~~gLI~gkIDQv~~ 353 (413)
.++..+||+.++++..- |=..|=+....|+|. -|..++
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~--~~~~dr 68 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK--EETLSY 68 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE--EEEEET
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee--cCCCCC
Confidence 69999999999999999 999999999999999 444443
No 56
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=51.11 E-value=4.4 Score=34.33 Aligned_cols=57 Identities=9% Similarity=0.090 Sum_probs=41.3
Q ss_pred hhhhhhhccCCCCCCCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEec
Q 015104 299 MRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRR 359 (413)
Q Consensus 299 irLLaL~~L~~~~~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~ 359 (413)
+|+|.++... . .+.+|-++||+.++||...|+..+-+.-..|+|...=. +|-....+
T Consensus 17 l~~L~~La~~-~-~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG--~GGy~L~~ 73 (149)
T 1ylf_A 17 VHILSILKNN-P-SSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG--PGGAGLLK 73 (149)
T ss_dssp HHHHHHHHHS-C-GGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-----CCEEESS
T ss_pred HHHHHHHHhC-C-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC--CCceEeCC
Confidence 4444444332 3 46799999999999999999999999999999986533 45555544
No 57
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=50.67 E-value=9.9 Score=31.10 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=32.5
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEE
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVI 356 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~ 356 (413)
+.++..+||+.++++..-|=..|=+....|+|.-.-|..++...
T Consensus 53 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~ 96 (148)
T 3nrv_A 53 SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTY 96 (148)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------C
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCccee
Confidence 47999999999999999999999999999999988777666543
No 58
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=49.87 E-value=16 Score=27.67 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=33.5
Q ss_pred CCCcchhhhhhccccCcchhhhHHhhhhhhcccccccc
Q 015104 312 SGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMD 349 (413)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkID 349 (413)
.+.++..+|++.++++..-|-..+=.....|+|...-+
T Consensus 36 ~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~ 73 (99)
T 3cuo_A 36 SPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRD 73 (99)
T ss_dssp CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 35799999999999999999999999999999976644
No 59
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=49.86 E-value=13 Score=31.55 Aligned_cols=50 Identities=8% Similarity=0.010 Sum_probs=35.6
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTE 362 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~ 362 (413)
..++..+||+.++++..-|=..|=+....|+|.-.-|..++....-..++
T Consensus 67 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~ 116 (166)
T 3deu_A 67 PDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTE 116 (166)
T ss_dssp SSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECG
T ss_pred CCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECH
Confidence 45999999999999999999999999999999988877666544433333
No 60
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=49.34 E-value=12 Score=31.24 Aligned_cols=50 Identities=16% Similarity=0.086 Sum_probs=39.0
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTE 362 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~ 362 (413)
..++..+||+.++++..-|=..|=+....|+|.-+-|..++....-..++
T Consensus 63 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~ 112 (159)
T 3s2w_A 63 DGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTE 112 (159)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECH
Confidence 56899999999999999999999999999999988877666544433333
No 61
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=49.21 E-value=8.1 Score=27.72 Aligned_cols=29 Identities=7% Similarity=0.142 Sum_probs=25.6
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhh
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTA 341 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~ 341 (413)
...|+.+||+.+|+|..-|...+-+|+..
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALRK 52 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 46899999999999999999999888643
No 62
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=48.78 E-value=25 Score=31.98 Aligned_cols=30 Identities=17% Similarity=0.055 Sum_probs=21.9
Q ss_pred HHHHHHHHhhhhcccCchhhHHHHHHHhhhc
Q 015104 178 ALFLGIANVLKESRSSSKDSFKFLTKYLATF 208 (413)
Q Consensus 178 ~~y~~~~~~l~~~~~~~~~~y~~~l~yL~t~ 208 (413)
..|..++.++.. .|++++|..+.-+.+...
T Consensus 197 ~~~~nlg~~y~~-~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 197 KVRYNHAKALYL-DSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHH-HhhHHHHHHHHHHHHHHH
Confidence 566777777776 477888888887777654
No 63
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=48.68 E-value=9.8 Score=31.07 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=36.0
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhcccccccccccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQ 353 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~ 353 (413)
..+|..+||+.++++..-|-..|=+....|+|.-.-|..++
T Consensus 44 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 84 (145)
T 3g3z_A 44 GSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDR 84 (145)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCG
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCC
Confidence 35999999999999999999999999999999977665554
No 64
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=48.59 E-value=11 Score=31.63 Aligned_cols=50 Identities=8% Similarity=0.025 Sum_probs=40.9
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTE 362 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~ 362 (413)
..++-.+||+.++++..-|=..|=+....|+|.=.-|..++....-..++
T Consensus 45 ~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~ 94 (151)
T 4aik_A 45 PEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTE 94 (151)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECG
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCH
Confidence 34677899999999999999999999999999988888777554444444
No 65
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=48.25 E-value=17 Score=28.92 Aligned_cols=55 Identities=13% Similarity=0.189 Sum_probs=43.9
Q ss_pred hHHhhhhhhhhhccCCCCCCCcchhhhhhcc-ccCcchhhhHHhhhhhhcccccccc
Q 015104 294 DCIAKMRLMSLVDLGSNESGQIPYGLIKDTL-QINNDEVEKWVVKARTAKLMDCKMD 349 (413)
Q Consensus 294 ~~~~KirLLaL~~L~~~~~r~isy~~Ia~~l-~i~~~eVE~lvi~aI~~gLI~gkID 349 (413)
.+-.|-|++-|..|... ...++|.+|++.+ +|+..-+=.-+=+.-..|||+-+.+
T Consensus 23 ~l~~~wrl~IL~~L~~g-~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 23 LLGKKYTMLIISVLGNG-STRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp HHHSTTHHHHHHHHTSS-SSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred HHcCccHHHHHHHHhcC-CCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 44567777777766632 3346699999999 9999999999999999999998877
No 66
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=48.08 E-value=18 Score=29.01 Aligned_cols=49 Identities=10% Similarity=0.138 Sum_probs=40.3
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEeccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCT 361 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~ 361 (413)
+.++..+|++.++++..-|-..|=+....|+|.-.-|..++....-..+
T Consensus 51 ~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT 99 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLS 99 (140)
T ss_dssp SSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEEC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEEC
Confidence 4799999999999999999999999999999998877666654433333
No 67
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=48.03 E-value=11 Score=31.65 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=48.4
Q ss_pred HhhhhhhhhhccCCCCCCCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEeccccc
Q 015104 296 IAKMRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTER 363 (413)
Q Consensus 296 ~~KirLLaL~~L~~~~~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~R 363 (413)
-.+.+++-|..|. . +.++|.+|++.++|+..-|=..+=+....|+|+.+-+..++ ...-+.+++
T Consensus 22 ~~~w~l~IL~~L~-~--g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y~LT~~ 85 (146)
T 2f2e_A 22 GDGWSMLIVRDAF-E--GLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGS-HQEYRLTDK 85 (146)
T ss_dssp CSSSHHHHHHHHH-T--TCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSS-CEEEEECHH
T ss_pred CCchHHHHHHHHH-h--CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCC-eEEEEECch
Confidence 3556655555553 2 56899999999999999999999999999999999887776 444444443
No 68
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=47.76 E-value=13 Score=30.25 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=34.8
Q ss_pred cchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEeccccc
Q 015104 315 IPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTER 363 (413)
Q Consensus 315 isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~R 363 (413)
++..+||+.++++..-|-..|-+....|+|.-.-|..++....-..+++
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~ 100 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDL 100 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----------CCEECGG
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHh
Confidence 9999999999999999999999999999999998877776655555543
No 69
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=47.72 E-value=5.8 Score=33.77 Aligned_cols=36 Identities=6% Similarity=0.134 Sum_probs=32.7
Q ss_pred CCCcchhhhhhccccCcchhhhHHhhhhhhcccccc
Q 015104 312 SGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCK 347 (413)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gk 347 (413)
+..+|+.+||+.+|++..-|-..+-+....|+|++.
T Consensus 22 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 22 NGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeee
Confidence 356899999999999999999999999999999864
No 70
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=47.57 E-value=14 Score=29.89 Aligned_cols=43 Identities=2% Similarity=-0.004 Sum_probs=37.3
Q ss_pred CCCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccE
Q 015104 312 SGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQV 354 (413)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~ 354 (413)
...++..+|++.++++..-|-..|=+....|+|.-.-|..++.
T Consensus 50 ~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R 92 (146)
T 2fbh_A 50 RDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRR 92 (146)
T ss_dssp SSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBC
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccC
Confidence 3579999999999999999999999999999998877665544
No 71
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=47.56 E-value=14 Score=30.96 Aligned_cols=70 Identities=13% Similarity=-0.003 Sum_probs=47.7
Q ss_pred hcCCcchhHHhhhhhhhhhccCCCCCCCcchhhhhhccccCcchhhhHHhhhhhhccccc--cccccccEEEEec
Q 015104 287 SYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDC--KMDQMNQVVIVRR 359 (413)
Q Consensus 287 ~~~l~~~~~~~KirLLaL~~L~~~~~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~g--kIDQv~~~v~vt~ 359 (413)
++|++...+. -++-|..+...+..-.|.++||+.+++++.+|...+=+.+..|+|.= +.|..++....-.
T Consensus 27 ~LgLs~~E~~---lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~yd 98 (135)
T 2v79_A 27 QLGLNETELI---LLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYS 98 (135)
T ss_dssp HHTCCHHHHH---HHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEE
T ss_pred HhCCCHHHHH---HHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEee
Confidence 4567655543 23333333333245689999999999999999999999999999974 4455444444433
No 72
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=46.86 E-value=13 Score=30.75 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=33.3
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEE
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVI 356 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~ 356 (413)
..++..+|++.++++..-|-..|=+....|+|.-.-|..++...
T Consensus 61 ~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~ 104 (160)
T 3boq_A 61 DGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSF 104 (160)
T ss_dssp TCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------C
T ss_pred CCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeE
Confidence 46999999999999999999999999999999987766555443
No 73
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=46.70 E-value=11 Score=30.48 Aligned_cols=49 Identities=16% Similarity=0.056 Sum_probs=39.1
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEeccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCT 361 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~ 361 (413)
..+|..+||+.++++..-|-..|=+....|+|.-.-|..++....-..+
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT 94 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLT 94 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEEC
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEEC
Confidence 4799999999999999999999999999999998877766654433333
No 74
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=46.24 E-value=14 Score=29.53 Aligned_cols=42 Identities=5% Similarity=0.149 Sum_probs=36.6
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccE
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQV 354 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~ 354 (413)
+.++..+||+.++++..-|-..|=+....|+|.-.-|..++.
T Consensus 46 ~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r 87 (139)
T 3bja_A 46 GKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQR 87 (139)
T ss_dssp CSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTT
T ss_pred CCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCCc
Confidence 469999999999999999999999999999998776665543
No 75
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=45.42 E-value=14 Score=30.02 Aligned_cols=50 Identities=6% Similarity=0.002 Sum_probs=31.9
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTE 362 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~ 362 (413)
..++..+||+.++++..-|=..|=+....|+|.-.-|..++....-..++
T Consensus 50 ~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~ 99 (142)
T 3ech_A 50 RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTD 99 (142)
T ss_dssp TTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECH
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECH
Confidence 46899999999999999999999999999999999888777654444443
No 76
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=44.57 E-value=11 Score=31.68 Aligned_cols=35 Identities=11% Similarity=0.280 Sum_probs=32.4
Q ss_pred CCCcchhhhhhccccCcchhhhHHhhhhhhccccc
Q 015104 312 SGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDC 346 (413)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~g 346 (413)
+..+|+.+||+.+|++..-|-..+-+....|+|++
T Consensus 20 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 20 NARTAYAELAKQFGVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp CTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcce
Confidence 35799999999999999999999999999999986
No 77
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=44.32 E-value=33 Score=26.08 Aligned_cols=67 Identities=7% Similarity=0.009 Sum_probs=46.8
Q ss_pred CCcchhhh----hhccccCcchhhhHHhhhhhhccccccccccccEEEEecccccccchhhHHHHHhhhhhhhhhH
Q 015104 313 GQIPYGLI----KDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRANV 384 (413)
Q Consensus 313 r~isy~~I----a~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~R~~~~~q~~~L~~rL~~W~~~v 384 (413)
+.++..+| |+.++++..-|-..|=+....|+|.-.-|.....+.+| .-|.+-+..+...+..|...+
T Consensus 21 ~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT-----~~G~~~~~~~~~~~~~~~~~~ 91 (99)
T 1tbx_A 21 EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLT-----EKGKLFAISLKTAIETYKQIK 91 (99)
T ss_dssp TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEEC-----HHHHHHHHHHHHHHHHHHHHH
Confidence 56899999 99999999999999988899999988777633333333 233444555555555554443
No 78
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=44.02 E-value=15 Score=29.96 Aligned_cols=44 Identities=14% Similarity=0.263 Sum_probs=36.1
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEE
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVI 356 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~ 356 (413)
..++..+|++.++++..-|-..|=+....|+|.-.-|..++...
T Consensus 55 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~ 98 (150)
T 2rdp_A 55 GDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRRVV 98 (150)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CE
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCccee
Confidence 46899999999999999999999999999999887776555433
No 79
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=43.86 E-value=16 Score=30.34 Aligned_cols=44 Identities=7% Similarity=0.009 Sum_probs=32.4
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEE
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVI 356 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~ 356 (413)
..++..+|++.++++..-|-..|=+....|+|.-.-|..++...
T Consensus 62 ~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~ 105 (162)
T 2fa5_A 62 PGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRS 105 (162)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------C
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCCCee
Confidence 46899999999999999999999999999999987766665543
No 80
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=42.74 E-value=11 Score=27.39 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=24.9
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhh
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKART 340 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~ 340 (413)
...|+.+||+.+|++..-|...+-+|+.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~ 56 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALR 56 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4689999999999999999998888764
No 81
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=42.66 E-value=15 Score=29.89 Aligned_cols=44 Identities=7% Similarity=0.102 Sum_probs=34.4
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEE
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVI 356 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~ 356 (413)
+.++..+|++.++++..-|-..|=+....|+|.-.-|..++...
T Consensus 49 ~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~ 92 (147)
T 2hr3_A 49 GDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRT 92 (147)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CC
T ss_pred CCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCce
Confidence 56999999999999999999999999999999888776555433
No 82
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=42.36 E-value=17 Score=29.19 Aligned_cols=44 Identities=7% Similarity=0.034 Sum_probs=38.0
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEE
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVI 356 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~ 356 (413)
..++..+|++.++++..-|-..|=+....|+|.-.-|..++...
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~ 90 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGV 90 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCE
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCcee
Confidence 46899999999999999999999999999999988777665433
No 83
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=41.07 E-value=14 Score=30.26 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=34.4
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTE 362 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~ 362 (413)
..+|..+|++.++++..-|=..|=+....|+|.-.-|..++....-..++
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~ 102 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATE 102 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECH
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECH
Confidence 45999999999999999999999999999999998888777655544444
No 84
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=40.85 E-value=12 Score=29.71 Aligned_cols=29 Identities=7% Similarity=0.142 Sum_probs=25.8
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhh
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTA 341 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~ 341 (413)
...||++||+.+|+|..-|...+-+|+..
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlkk 66 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALRK 66 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 57999999999999999999999888653
No 85
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=40.18 E-value=15 Score=30.35 Aligned_cols=42 Identities=7% Similarity=0.058 Sum_probs=33.5
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccE
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQV 354 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~ 354 (413)
..++..+|++.++++..-|-..|=+....|+|.-.-|..++.
T Consensus 56 ~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R 97 (155)
T 3cdh_A 56 DAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKR 97 (155)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCC
Confidence 569999999999999999999999999999999777665554
No 86
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=40.06 E-value=13 Score=28.24 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=25.7
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhh
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTA 341 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~ 341 (413)
...||.+||+.+|+|..-|...+-+|+..
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRK 65 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 56999999999999999999999888643
No 87
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=40.05 E-value=34 Score=28.60 Aligned_cols=87 Identities=13% Similarity=0.137 Sum_probs=52.5
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccccccchhhHHHHHhhhhhhhh---------h
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRA---------N 383 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~R~~~~~q~~~L~~rL~~W~~---------~ 383 (413)
..++..+|++.++++..-|=..|=+....|+|.-.-|..++....-..++. |.+-+..+......|.. .
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~--G~~~~~~~~~~~~~~~~~~~~~l~~~e 138 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDA--GLKLLKDLEEPVRQCHERQLGHLAADE 138 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHH--HHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 579999999999999999999999999999999998888876665555543 22233333333333322 2
Q ss_pred HHHHHHHhhhcccccccC
Q 015104 384 VANVISTIQATNKITEDG 401 (413)
Q Consensus 384 v~~~~~~v~~~~~~~~~~ 401 (413)
+..+...++.+.+..+.+
T Consensus 139 ~~~l~~~L~~l~~~l~~~ 156 (168)
T 3u2r_A 139 LHELIRLMELARTPHEEP 156 (168)
T ss_dssp HHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 345555555555544333
No 88
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=39.99 E-value=41 Score=27.87 Aligned_cols=82 Identities=7% Similarity=0.068 Sum_probs=56.7
Q ss_pred HhhhhhhhhhccCCCCCCCcchhhhhhcc-ccCcchhhhHHhhhhhhccccccccccccEEEEecccccccchhhHHHHH
Q 015104 296 IAKMRLMSLVDLGSNESGQIPYGLIKDTL-QINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLR 374 (413)
Q Consensus 296 ~~KirLLaL~~L~~~~~r~isy~~Ia~~l-~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~R~~~~~q~~~L~ 374 (413)
-.|-+++-|..|. . +..+|.+|++.+ +|+..-+=..+=+.-..|||.=+.+..+.....-..+++--. ....-
T Consensus 24 g~kW~l~IL~~L~-~--g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~---l~~~l 97 (131)
T 4a5n_A 24 GGKWKGILFYHMI-D--GKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRT---LEPIV 97 (131)
T ss_dssp CSSSHHHHHHHHT-T--SCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGG---GHHHH
T ss_pred cCcCHHHHHHHHh-c--CCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHH---HHHHH
Confidence 3666777777665 3 578999999999 999999999999999999999887776654444444443221 22223
Q ss_pred hhhhhhhhh
Q 015104 375 TKLSTWRAN 383 (413)
Q Consensus 375 ~rL~~W~~~ 383 (413)
..|..|...
T Consensus 98 ~~l~~W~~~ 106 (131)
T 4a5n_A 98 LQMKEWGES 106 (131)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445666543
No 89
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=39.31 E-value=18 Score=29.13 Aligned_cols=69 Identities=12% Similarity=0.118 Sum_probs=49.5
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccccccchhhHHHHHhhhhhhhhh
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRAN 383 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~R~~~~~q~~~L~~rL~~W~~~ 383 (413)
..++..+||+.++++..-|=..|=+....|+|.-+-|..++....-..++. |.+-++.+...+..|...
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~--G~~~~~~~~~~~~~~~~~ 120 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQ--QRKKIESLLSRVNKRITE 120 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSH--HHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHH--HHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999888877665444444443 333444444444444433
No 90
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=38.98 E-value=19 Score=29.63 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=36.3
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccE
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQV 354 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~ 354 (413)
..++..+|++.++++..-|-..|=+....|+|.-.-|..++.
T Consensus 57 ~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R 98 (154)
T 2eth_A 57 GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRR 98 (154)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCcc
Confidence 469999999999999999999999999999998877655443
No 91
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=38.74 E-value=19 Score=26.74 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=31.3
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDC 346 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~g 346 (413)
+.+|..+||+.++++..-|-..+-.....|+|..
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 5699999999999999999999999999999983
No 92
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=38.51 E-value=26 Score=28.01 Aligned_cols=50 Identities=10% Similarity=0.039 Sum_probs=40.9
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTE 362 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~ 362 (413)
..++..+|++.++++..-|-..|=+....|+|.-.-|..++....-..++
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~ 98 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTE 98 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECH
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECH
Confidence 45999999999999999999999999999999988777666544433333
No 93
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=38.31 E-value=15 Score=32.12 Aligned_cols=53 Identities=11% Similarity=0.177 Sum_probs=37.6
Q ss_pred hHHhhhhhhhhhccCCCCCCCcchhhhhhccccCcchhhhHHhhhhhhcc-ccc
Q 015104 294 DCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKL-MDC 346 (413)
Q Consensus 294 ~~~~KirLLaL~~L~~~~~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gL-I~g 346 (413)
.+...-|...++.+...+.+.+|..+||+.++++..-|-.-|-..-..|+ |.+
T Consensus 16 ~m~~~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 16 KTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEE
T ss_pred hhhHHHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 44555677777776653245699999999999998766666655555777 764
No 94
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=37.90 E-value=21 Score=29.21 Aligned_cols=66 Identities=5% Similarity=-0.029 Sum_probs=36.6
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccccccchhhHHHHHhhhhhh
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTW 380 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~R~~~~~q~~~L~~rL~~W 380 (413)
..++..+||+.++++..-|=..|=+....|+|.-.-|..++....-..++. |.+-+..+......|
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~--G~~~~~~~~~~~~~~ 121 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPK--GAALVEEFNNIFLEV 121 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------CCCCBCHH--HHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHH--HHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999998887776554444443 333333443333333
No 95
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=37.44 E-value=12 Score=28.58 Aligned_cols=28 Identities=18% Similarity=0.072 Sum_probs=24.6
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhh
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKART 340 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~ 340 (413)
..+||.+||+.+|++..-|...+-+|+.
T Consensus 52 ~g~s~~eIA~~lgis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 52 RGWSTAQIATDLGIAEGTVKSRLHYAVR 79 (92)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3579999999999999999999888754
No 96
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=36.86 E-value=17 Score=29.46 Aligned_cols=51 Identities=6% Similarity=0.084 Sum_probs=37.7
Q ss_pred CCCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccc
Q 015104 312 SGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTE 362 (413)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~ 362 (413)
.+.++..+||+.++++..-|=..|=+....|+|.-.-|..++....-..++
T Consensus 48 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~ 98 (140)
T 3hsr_A 48 DEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTE 98 (140)
T ss_dssp TCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECH
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeECh
Confidence 357999999999999999999999999999999988877776554444444
No 97
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=36.29 E-value=29 Score=26.43 Aligned_cols=46 Identities=13% Similarity=0.263 Sum_probs=35.1
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEe
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVR 358 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt 358 (413)
..++..+||+.++++..-|=..|=+....|+|...-|.-...+.+|
T Consensus 29 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT 74 (95)
T 2qvo_A 29 NDVYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLT 74 (95)
T ss_dssp CCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEC
Confidence 3599999999999999999999999999999933333333344444
No 98
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=36.15 E-value=23 Score=28.82 Aligned_cols=41 Identities=10% Similarity=0.167 Sum_probs=35.9
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhcccccccccccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQ 353 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~ 353 (413)
..++..+|++.++++..-|-..|=+....|+|.-.-|..++
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~ 93 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHA 93 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSST
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccc
Confidence 46899999999999999999999999999999887665444
No 99
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=35.97 E-value=13 Score=26.21 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=23.8
Q ss_pred CcchhhhhhccccCcchhhhHHhhhhh
Q 015104 314 QIPYGLIKDTLQINNDEVEKWVVKART 340 (413)
Q Consensus 314 ~isy~~Ia~~l~i~~~eVE~lvi~aI~ 340 (413)
..|+.+||+.+|++..-|...+-+|+.
T Consensus 31 g~s~~eIA~~lgis~~tv~~~~~ra~~ 57 (70)
T 2o8x_A 31 GLSYADAAAVCGCPVGTIRSRVARARD 57 (70)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 479999999999999999998888754
No 100
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=35.86 E-value=14 Score=26.71 Aligned_cols=46 Identities=4% Similarity=0.231 Sum_probs=35.2
Q ss_pred hhhhhhhhccCCCCCCCcchhhhhhccccCcchhhhHHhhhhhhccccc
Q 015104 298 KMRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDC 346 (413)
Q Consensus 298 KirLLaL~~L~~~~~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~g 346 (413)
+-++|.++. .. .+.+|..+||+.+++|...|...|=..-..|+|..
T Consensus 12 ~~~IL~~L~--~~-~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 12 EQKILQVLS--DD-GGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHHH--HH-CSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHH--Hc-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 334555553 12 35699999999999999999999888888888753
No 101
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=35.52 E-value=19 Score=28.94 Aligned_cols=41 Identities=10% Similarity=0.133 Sum_probs=36.0
Q ss_pred CcchhhhhhccccCcchhhhHHhhhhhhccccccccccccE
Q 015104 314 QIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQV 354 (413)
Q Consensus 314 ~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~ 354 (413)
.++..+|++.++++..-|-..|=+....|+|.-.-|..++.
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R 90 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSR 90 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTT
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCCC
Confidence 69999999999999999999999999999998776655543
No 102
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=35.17 E-value=14 Score=30.41 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=33.5
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccE
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQV 354 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~ 354 (413)
..++..+|++.++++..-|-..|=+....|+|.-.-|..++.
T Consensus 60 ~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R 101 (153)
T 2pex_A 60 DERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDER 101 (153)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC------
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccCC
Confidence 468999999999999999999999999999999877665554
No 103
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=34.02 E-value=40 Score=32.35 Aligned_cols=65 Identities=15% Similarity=0.341 Sum_probs=41.9
Q ss_pred hhcccchhccccc-hhhhhhcCCcchhHHhhhhhhhhhccCCC---CCCCcchhhhhhccccC-cchhhhHH
Q 015104 269 QRLDGYLEFQAGN-SALLKSYGLVHEDCIAKMRLMSLVDLGSN---ESGQIPYGLIKDTLQIN-NDEVEKWV 335 (413)
Q Consensus 269 G~l~~f~~~~~~~-~~~l~~~~l~~~~~~~KirLLaL~~L~~~---~~r~isy~~Ia~~l~i~-~~eVE~lv 335 (413)
|++..|.....+- ..++... .-+....++|..+|..++.. ..+.+|.+.+++.|+.+ ++|++.|+
T Consensus 177 gNY~rFFrL~~~~~~pyL~ac--lle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~ 246 (316)
T 3t5v_A 177 NFYARFFQLMQSPSLPLLMGF--FLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFC 246 (316)
T ss_dssp CCHHHHHHHHTCTTSCHHHHH--HHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHH
T ss_pred chHHHHHHHHhccCCChHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHH
Confidence 5666666554431 1122210 12334578898888887754 23589999999999996 57888887
No 104
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=33.59 E-value=7.8 Score=29.36 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=29.6
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhcccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMD 345 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~ 345 (413)
..+|..+||+++|++..-|..-+-..-..|+|.
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 679999999999999888999999888888884
No 105
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=33.54 E-value=18 Score=29.35 Aligned_cols=42 Identities=12% Similarity=0.006 Sum_probs=34.7
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccE
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQV 354 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~ 354 (413)
+.++..+|++.++++..-|-..|=+....|+|.-.-|..++.
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R 91 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRR 91 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CC
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCc
Confidence 578999999999999999999999999999999887665554
No 106
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=33.03 E-value=10 Score=31.70 Aligned_cols=37 Identities=8% Similarity=0.119 Sum_probs=32.9
Q ss_pred CCCcchhhhhhccccCcchhhhHHhhhhhhccccccc
Q 015104 312 SGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKM 348 (413)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkI 348 (413)
+..+|+.+||+.+|++..-|-..+-+....|+|.+.-
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 55 (150)
T 2w25_A 19 DGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYS 55 (150)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEE
Confidence 3569999999999999999999999999999997543
No 107
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=32.53 E-value=24 Score=28.85 Aligned_cols=41 Identities=10% Similarity=0.218 Sum_probs=35.9
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhcccccccccccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQ 353 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~ 353 (413)
..++..+||+.++++..-|-..|=+....|+|.-.-|..++
T Consensus 50 ~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 90 (155)
T 1s3j_A 50 GSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDR 90 (155)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCC
Confidence 46899999999999999999999999999999877665444
No 108
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=31.88 E-value=33 Score=27.41 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=36.1
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhcccccccccccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQ 353 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~ 353 (413)
+.++..+||+.++++..-|-..|=+....|+|.-.-+..++
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~ 84 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQ 84 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSST
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 46999999999999999999999999999999887765544
No 109
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=31.77 E-value=2.4e+02 Score=26.71 Aligned_cols=113 Identities=11% Similarity=0.020 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHhhhhhhhhccCCCCcchhheeeehhcc---cCCCChhHHHHHHHHHHhhhhcCCC
Q 015104 36 QVNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLV---TKPESLDEVHEMTKLISGKIIQQPN 112 (413)
Q Consensus 36 e~~~~~~~~e~l~~~klw~qLt~~l~~~~~~~~~~~~dke~e~~~n~i~~lv---~~~~~~~~~l~~v~~l~~~~~~~~~ 112 (413)
.+.+.+..++..++++.+.+--..+.+-..-..+. +....+..++.+-. .+-+....+-.++-.+++...+...
T Consensus 12 ~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~---~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~ 88 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRS---KSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEV 88 (312)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC
Confidence 37889999999999998766655443322222222 23333334332211 1222333333455555555544322
Q ss_pred CCcchhHHHHHHHhhhhcC-cchhhHHHHHHHhHhhcCcc
Q 015104 113 DKPAMRLKILFNLYNLLEN-PYSRFFVYMKALNLAVNGKV 151 (413)
Q Consensus 113 ~~~~~~l~~L~~Lfn~l~~-~~~r~~v~~~il~~a~~~~~ 151 (413)
.-....+.-|..|+..+|+ +..|.......+......+.
T Consensus 89 ~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~ 128 (312)
T 2wpv_A 89 KVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSE 128 (312)
T ss_dssp CCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCC
Confidence 2334566677789998876 45687777777777665443
No 110
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=31.51 E-value=39 Score=25.89 Aligned_cols=39 Identities=10% Similarity=0.266 Sum_probs=34.1
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhcccccccccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQM 351 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv 351 (413)
+..++.+|++.++++..-|-.-+-..-..|+|..+-+..
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~ 73 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIK 73 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 458999999999999999999999999999998765544
No 111
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=31.43 E-value=23 Score=29.35 Aligned_cols=73 Identities=19% Similarity=0.329 Sum_probs=51.0
Q ss_pred hhhhcCCcchhHHhhhhhhhhhccCCCCCCCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccc
Q 015104 284 LLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTE 362 (413)
Q Consensus 284 ~l~~~~l~~~~~~~KirLLaL~~L~~~~~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~ 362 (413)
.++.+|+... ..++|.++.... .+.+|-.+|++.++++..-|=..|=+....|+|.=.-|..++....-+.++
T Consensus 27 ~l~~~gLt~~----q~~vL~~L~~~~--~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~ 99 (147)
T 4b8x_A 27 VVKPYGLTFA----RYEALVLLTFSK--SGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITD 99 (147)
T ss_dssp HHGGGTCCHH----HHHHHHHHHTSG--GGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECH
T ss_pred HHHHcCCCHH----HHHHHHHHHHCC--CCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECH
Confidence 3455566533 344555554443 357999999999999999999999999999999999988877655555544
No 112
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=31.07 E-value=18 Score=30.31 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=27.6
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKM 348 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkI 348 (413)
..+||++||+.+|+|+.-|...+-+|... ++..+
T Consensus 108 ~g~s~~EIA~~lgis~~tV~~~l~rar~~--Lr~~l 141 (157)
T 2lfw_A 108 EGFSPEDAAYLIEVDTSEVETLVTEALAE--IEKQT 141 (157)
T ss_dssp SCCCHHHHHHTTTSCHHHHHHHHHHHHHH--HHTTS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHH--HHHHH
Confidence 46899999999999999999999988533 44444
No 113
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=30.96 E-value=25 Score=28.29 Aligned_cols=42 Identities=10% Similarity=0.201 Sum_probs=36.4
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccE
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQV 354 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~ 354 (413)
..++..+|++.++++..-|-..|=+....|+|.-.-|..++.
T Consensus 50 ~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R 91 (142)
T 2bv6_A 50 SPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQR 91 (142)
T ss_dssp SEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTT
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCcc
Confidence 469999999999999999999999999999998877654443
No 114
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=30.79 E-value=37 Score=27.34 Aligned_cols=47 Identities=11% Similarity=0.127 Sum_probs=40.3
Q ss_pred chhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccc
Q 015104 316 PYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTE 362 (413)
Q Consensus 316 sy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~ 362 (413)
+..+|++.++++..-|=..|=+....|+|.-.-|..++....-..++
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~ 98 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITP 98 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECH
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECH
Confidence 99999999999999999999999999999998888777655544444
No 115
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=30.29 E-value=27 Score=28.93 Aligned_cols=42 Identities=12% Similarity=0.171 Sum_probs=35.1
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccE
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQV 354 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~ 354 (413)
..++..+|++.++++..-|-..|=+....|+|.-.-|..++.
T Consensus 65 ~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R 106 (162)
T 3cjn_A 65 DGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQR 106 (162)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCS
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCC
Confidence 468999999999999999999999999999998776554443
No 116
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=30.00 E-value=29 Score=29.12 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=38.0
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEE
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVI 356 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~ 356 (413)
..++..+|++.++++..-|=..|=+....|+|.-.-|..++...
T Consensus 58 ~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~ 101 (168)
T 2nyx_A 58 GPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRREL 101 (168)
T ss_dssp CSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCCCee
Confidence 46999999999999999999999999999999988776655433
No 117
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=29.57 E-value=25 Score=30.01 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=33.4
Q ss_pred CcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEE
Q 015104 314 QIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVI 356 (413)
Q Consensus 314 ~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~ 356 (413)
.++..+|++.++++..-|=..|=+....|+|.-.-|..++...
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~ 128 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSA 128 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------C
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCCCee
Confidence 4999999999999999999999999999999988776666543
No 118
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=29.48 E-value=59 Score=26.12 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=39.1
Q ss_pred hhhccCCCCCCCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEec
Q 015104 303 SLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRR 359 (413)
Q Consensus 303 aL~~L~~~~~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~ 359 (413)
.|..+... .+.++..+||+.++++..-|-..|-+....|+|.-.= +.+.+|.
T Consensus 21 ~l~~l~~~-~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~----~~~~Lt~ 72 (139)
T 2x4h_A 21 TIKRYNDS-GEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE----DGVWITN 72 (139)
T ss_dssp HHHHHHTT-TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET----TEEEECH
T ss_pred HHHHHHhc-CCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC----CeEEECh
Confidence 34444444 4679999999999999999999988888899987532 5566653
No 119
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=28.98 E-value=29 Score=29.34 Aligned_cols=36 Identities=8% Similarity=0.111 Sum_probs=31.5
Q ss_pred CCCcchhhhhhccccCcchhhhHHhhhhhhcccccc
Q 015104 312 SGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCK 347 (413)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gk 347 (413)
+..+|+.+||+.+|++..-|-.-+-+.-..|+|++.
T Consensus 25 ~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~~ 60 (163)
T 2gqq_A 25 DGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGY 60 (163)
T ss_dssp CSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 345799999999999999888888888899999873
No 120
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=28.93 E-value=46 Score=25.20 Aligned_cols=38 Identities=13% Similarity=0.264 Sum_probs=33.6
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQ 350 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQ 350 (413)
+.+++.+|++.++++..-|-.-+-.....|+|..+-+.
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g 72 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEA 72 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 57999999999999999999999999999999876443
No 121
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=28.45 E-value=17 Score=23.24 Aligned_cols=24 Identities=0% Similarity=0.109 Sum_probs=21.0
Q ss_pred cchhhhhhccccCcchhhhHHhhh
Q 015104 315 IPYGLIKDTLQINNDEVEKWVVKA 338 (413)
Q Consensus 315 isy~~Ia~~l~i~~~eVE~lvi~a 338 (413)
+|+.+||+.++|+..-|..|+-+.
T Consensus 22 ~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 22 VSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHhhH
Confidence 799999999999999998887554
No 122
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=28.15 E-value=23 Score=29.49 Aligned_cols=43 Identities=12% Similarity=0.136 Sum_probs=35.7
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEE
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVV 355 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v 355 (413)
+.++..+|++.++++..-|=..|=+....|+|.-+-|..++..
T Consensus 66 ~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~ 108 (161)
T 3e6m_A 66 GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRK 108 (161)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCe
Confidence 4689999999999999999999999999999998877666543
No 123
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=28.12 E-value=23 Score=24.38 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=22.3
Q ss_pred CcchhhhhhccccCcchhhhHHhhhhh
Q 015104 314 QIPYGLIKDTLQINNDEVEKWVVKART 340 (413)
Q Consensus 314 ~isy~~Ia~~l~i~~~eVE~lvi~aI~ 340 (413)
-.|+.+||+.+++++.-|...+-++..
T Consensus 13 g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 13 GYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp SCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 479999999999999888877766543
No 124
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=27.10 E-value=32 Score=27.66 Aligned_cols=37 Identities=5% Similarity=0.072 Sum_probs=32.1
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhcccccccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMD 349 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkID 349 (413)
+.+++.+|++.+|++..-|-..+-.....|+|..+-+
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~ 91 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKE 91 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEE
Confidence 5689999999999999999999999889999987533
No 125
>1nxh_A MTH396 protein; hypothetical protein, disulfide bonds, homodimer, structural genomics, PSI, protein structure initiative; 2.80A {Methanothermobacterthermautotrophicus} SCOP: a.200.1.1
Probab=26.72 E-value=47 Score=27.47 Aligned_cols=40 Identities=13% Similarity=0.299 Sum_probs=30.4
Q ss_pred hhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccccccchhhHHHHHhhhhhhhhhH
Q 015104 319 LIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRANV 384 (413)
Q Consensus 319 ~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~R~~~~~q~~~L~~rL~~W~~~v 384 (413)
.|++++|||.+||+..+|+- ++..-.++++.|..+|+-.+
T Consensus 27 PlSk~lgis~ee~~~I~~~k--------------------------lDmssLe~lha~~E~Ak~~c 66 (126)
T 1nxh_A 27 PLSRELEIDVEEFQDILMDK--------------------------LDMSSLEALHPRFESARPRC 66 (126)
T ss_dssp TTTTTGGGTHHHHHHHHHHH--------------------------SCHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHH--------------------------cchhhHHHhhHHHHHHhhhh
Confidence 36899999999999999973 44556667777777776555
No 126
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=26.06 E-value=23 Score=28.96 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=24.3
Q ss_pred CcchhhhhhccccCcchhhhHHhhhhh
Q 015104 314 QIPYGLIKDTLQINNDEVEKWVVKART 340 (413)
Q Consensus 314 ~isy~~Ia~~l~i~~~eVE~lvi~aI~ 340 (413)
.+||.+||+.+|++..-|...+-+|+.
T Consensus 124 g~s~~EIA~~lgis~~tV~~~~~ra~~ 150 (164)
T 3mzy_A 124 GYSYREIATILSKNLKSIDNTIQRIRK 150 (164)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 579999999999999999999988854
No 127
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=25.96 E-value=37 Score=29.27 Aligned_cols=51 Identities=10% Similarity=0.163 Sum_probs=42.6
Q ss_pred CCCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccc
Q 015104 312 SGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTE 362 (413)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~ 362 (413)
.+.+|..+||+.++++..-|=..|=+....|+|.-.-|..++....-..++
T Consensus 55 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~ 105 (189)
T 3nqo_A 55 EEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTD 105 (189)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECH
Confidence 357999999999999999999999999999999998888776554444444
No 128
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=24.67 E-value=26 Score=29.61 Aligned_cols=27 Identities=4% Similarity=-0.017 Sum_probs=24.4
Q ss_pred CcchhhhhhccccCcchhhhHHhhhhh
Q 015104 314 QIPYGLIKDTLQINNDEVEKWVVKART 340 (413)
Q Consensus 314 ~isy~~Ia~~l~i~~~eVE~lvi~aI~ 340 (413)
.+||++||+.+|+++.-|...+-+|..
T Consensus 151 g~s~~eIA~~lgis~~tV~~~l~ra~~ 177 (184)
T 2q1z_A 151 DLTHRELAAETGLPLGTIKSRIRLALD 177 (184)
T ss_dssp CCSSCCSTTTCCCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 589999999999999999999988854
No 129
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=24.32 E-value=34 Score=31.31 Aligned_cols=44 Identities=14% Similarity=0.196 Sum_probs=37.1
Q ss_pred CCCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEe
Q 015104 312 SGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVR 358 (413)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt 358 (413)
++..|.++||+.+++|+.+|+.-+-+....|+|+ -..+++|.|.
T Consensus 176 ~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~---~~~~~~~~~~ 219 (232)
T 2qlz_A 176 NGRATVEELSDRLNLKEREVREKISEMARFVPVK---IINDNTVVLD 219 (232)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEE---EETTTEEEEC
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeE---EecCCeEEec
Confidence 4689999999999999999999999999999997 3345555553
No 130
>1nth_A Monomethylamine methyltransferase MTMB1; TIM barrel; HET: BGX; 1.55A {Methanosarcina barkeri} SCOP: c.1.25.1 PDB: 1l2q_A* 1tv2_A* 1tv3_A* 1tv4_A*
Probab=24.26 E-value=41 Score=33.38 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=44.6
Q ss_pred eeecccccccccCCcchhHHHHHHHHHHHhhhhhhhhhhHHHHHhhhhhhhhccC-CCCcchhheeeehhcccCCCChhH
Q 015104 17 VRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKV-SDKDLECIFTVICNLVTKPESLDE 95 (413)
Q Consensus 17 ~~~~~~~~~~~~~~~~a~~e~~~~~~~~e~l~~~klw~qLt~~l~~~~~~~~~~~-~dke~e~~~n~i~~lv~~~~~~~~ 95 (413)
+||.||.+.+-+|-++ .+++.+..++=..|+.+ |++. +.|+|+.+|++. .+.+.++
T Consensus 383 srfmaE~a~~~a~~~l--~~aN~i~~~l~~kY~d~----------------~~~~p~GK~F~ECYdv~-----t~~Pt~E 439 (458)
T 1nth_A 383 ARMMGEVARATAGVEI--SEVNVILDKLVSLYEKN----------------YASAPAGKTFQECYDVK-----TVTPTEE 439 (458)
T ss_dssp HHHHHHHHHHHTTCCH--HHHHHHHHHHHHTTTTC----------------STTCCCCCCHHHHEETT-----TTEECHH
T ss_pred HHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHhh----------------ccCCCCCCCHHHHhccc-----ccCchHH
Confidence 4788888887566222 34455555555555533 3333 358999999976 3556788
Q ss_pred HHHHHHHHHhhhh
Q 015104 96 VHEMTKLISGKII 108 (413)
Q Consensus 96 ~l~~v~~l~~~~~ 108 (413)
.+++.+.+...+.
T Consensus 440 Y~~~Y~~~~k~l~ 452 (458)
T 1nth_A 440 YMQVYDGARKKLE 452 (458)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888887776654
No 131
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=24.15 E-value=1.4e+02 Score=27.56 Aligned_cols=28 Identities=18% Similarity=0.143 Sum_probs=24.8
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhh
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKART 340 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~ 340 (413)
..+||.+||+.+|++...|...+-++..
T Consensus 126 eg~s~~EIA~~lgis~~tVks~l~rA~~ 153 (286)
T 3n0r_A 126 EGFTPTEAAQILDCDFGEVERLIGDAQA 153 (286)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 4589999999999999999999888754
No 132
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=24.13 E-value=52 Score=28.96 Aligned_cols=50 Identities=8% Similarity=-0.061 Sum_probs=37.8
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTE 362 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~ 362 (413)
..++..+|++.++++..-|=..|=+....|+|.-.-|..++....-..++
T Consensus 61 ~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~ 110 (207)
T 2fxa_A 61 NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTE 110 (207)
T ss_dssp TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECH
Confidence 46999999999999999999999999999999999887777554444443
No 133
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=24.01 E-value=27 Score=29.66 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=25.0
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhh
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKART 340 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~ 340 (413)
..+||++||+.+|++..-|...+-+|..
T Consensus 155 ~g~s~~EIA~~lgis~~tV~~~l~ra~~ 182 (194)
T 1or7_A 155 DGLSYEEIAAIMDCPVGTVRSRIFRARE 182 (194)
T ss_dssp TCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999988854
No 134
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=23.61 E-value=27 Score=28.58 Aligned_cols=42 Identities=14% Similarity=-0.001 Sum_probs=35.3
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhccccc--cccccccE
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDC--KMDQMNQV 354 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~g--kIDQv~~~ 354 (413)
..++..+|++.++++..-|-..|=+....|+|.- .-|..++.
T Consensus 54 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R 97 (154)
T 2qww_A 54 PGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSM 97 (154)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCc
Confidence 4699999999999999999999999999999998 66665553
No 135
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=22.27 E-value=32 Score=25.63 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.1
Q ss_pred CcchhhhhhccccCcchhhhHHhhhhh
Q 015104 314 QIPYGLIKDTLQINNDEVEKWVVKART 340 (413)
Q Consensus 314 ~isy~~Ia~~l~i~~~eVE~lvi~aI~ 340 (413)
-.|+.+||+.++++..-|...+-++..
T Consensus 36 g~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 36 GLPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 379999999999999999888777643
No 136
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=22.25 E-value=51 Score=25.57 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=32.6
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhcccccccc
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMD 349 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkID 349 (413)
+.+++.+|++.++++..-|-..+-.....|+|..+-+
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQ 74 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4589999999999999999999988889999987643
No 137
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=21.86 E-value=21 Score=28.91 Aligned_cols=46 Identities=7% Similarity=0.190 Sum_probs=38.2
Q ss_pred CCcchhhhhhccccCcchhhhHHhhhhhhcccccccccccc---EEEEe
Q 015104 313 GQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQ---VVIVR 358 (413)
Q Consensus 313 r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~---~v~vt 358 (413)
+.++..+|++.++++..-|-..|=+....|+|.-.-|..++ .+.+|
T Consensus 53 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT 101 (147)
T 1z91_A 53 ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLT 101 (147)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEEC
T ss_pred CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEEC
Confidence 46899999999999999999999999999999887765443 34444
No 138
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=21.53 E-value=34 Score=25.90 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=23.1
Q ss_pred CcchhhhhhccccCcchhhhHHhhhhh
Q 015104 314 QIPYGLIKDTLQINNDEVEKWVVKART 340 (413)
Q Consensus 314 ~isy~~Ia~~l~i~~~eVE~lvi~aI~ 340 (413)
-.|+.+||+.++++..-|...+-++..
T Consensus 44 g~s~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 44 GYSNQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp TCCTTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 479999999999999999888777653
No 139
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=21.04 E-value=41 Score=30.86 Aligned_cols=63 Identities=10% Similarity=0.082 Sum_probs=46.2
Q ss_pred hhhhhhccCCCCCCCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccccccch
Q 015104 300 RLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQ 367 (413)
Q Consensus 300 rLLaL~~L~~~~~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~R~~~~ 367 (413)
|-+.++++.....+.++..+|++.+|+|..-|-.++-.....|+|.- |..++...+. +|.+..
T Consensus 7 Ral~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~--~~~~~~Y~lG---~~~~~l 69 (260)
T 3r4k_A 7 KALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQ--VEGARSYRLG---PQVLRL 69 (260)
T ss_dssp HHHHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE--CSSSSEEEEC---TTHHHH
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--cCCCCcEEcC---HHHHHH
Confidence 44566666554346899999999999999999999999999999974 3444555444 455543
No 140
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=20.70 E-value=38 Score=24.45 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=23.0
Q ss_pred CcchhhhhhccccCcchhhhHHhhhhh
Q 015104 314 QIPYGLIKDTLQINNDEVEKWVVKART 340 (413)
Q Consensus 314 ~isy~~Ia~~l~i~~~eVE~lvi~aI~ 340 (413)
-.|+.+||+.++++..-|...+-++..
T Consensus 31 g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 31 GLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 479999999999999999888777643
No 141
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=20.40 E-value=36 Score=26.10 Aligned_cols=27 Identities=15% Similarity=0.270 Sum_probs=23.5
Q ss_pred CcchhhhhhccccCcchhhhHHhhhhh
Q 015104 314 QIPYGLIKDTLQINNDEVEKWVVKART 340 (413)
Q Consensus 314 ~isy~~Ia~~l~i~~~eVE~lvi~aI~ 340 (413)
-.|+.+||+.++++..-|...+-++..
T Consensus 42 g~s~~eIA~~l~is~~tV~~~l~r~~~ 68 (95)
T 3c57_A 42 GLTNKQIADRMFLAEKTVKNYVSRLLA 68 (95)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 479999999999999999988877654
No 142
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=20.01 E-value=56 Score=29.90 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=36.6
Q ss_pred hhhhhhccCCCCCCCcchhhhhhccccCcchhhhHHhhhhhhccccc
Q 015104 300 RLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDC 346 (413)
Q Consensus 300 rLLaL~~L~~~~~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~g 346 (413)
|-+.++++.....+.++..+|++.+|++..-|-.++-.....|+|.-
T Consensus 24 r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~ 70 (260)
T 2o0y_A 24 RVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTS 70 (260)
T ss_dssp HHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 34444454433246799999999999999999999988888999875
Done!