BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015105
         (413 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AFE|A Chain A, Crystal Structure Of The Hsaa Monooxygenase From
          M.Tuberculosis
 pdb|3AFE|B Chain B, Crystal Structure Of The Hsaa Monooxygenase From
          M.Tuberculosis
 pdb|3AFE|C Chain C, Crystal Structure Of The Hsaa Monooxygenase From
          M.Tuberculosis
 pdb|3AFE|D Chain D, Crystal Structure Of The Hsaa Monooxygenase From
          M.Tuberculosis
 pdb|3AFF|A Chain A, Crystal Structure Of The Hsaa Monooxygenase From M.
          Tuberculosis
 pdb|3AFF|B Chain B, Crystal Structure Of The Hsaa Monooxygenase From M.
          Tuberculosis
          Length = 394

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 3  MMLLIQKVASSRMMAMEKLLVDPRCQPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQ 61
          M  + Q+ A S + A++ LL + R + Q  ++  R+P ET+  L D   GF T     Q
Sbjct: 1  MTSIQQRDAQSVLAAIDNLLPEIRDRAQATEDLRRLPDETVKALDD--VGFFTLLQPQQ 57


>pdb|3B4R|A Chain A, Site-2 Protease From Methanocaldococcus Jannaschii
 pdb|3B4R|B Chain B, Site-2 Protease From Methanocaldococcus Jannaschii
          Length = 224

 Score = 29.6 bits (65), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 58/150 (38%), Gaps = 42/150 (28%)

Query: 182 VHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAXXX 241
           +HELGH   AK  GV++     +P   IG    + +I      +E  L++  AGPL    
Sbjct: 53  LHELGHSYVAKKYGVKIEKILLLP---IGGVAMMDKI-----PKEGELRIGIAGPLVSFI 104

Query: 242 XXXXXXXXXXXXPPSDGIGIVVDASVFHESXXXXXXXXXXXXDVLKDGTPISVNPLVIWA 301
                           GI +++ +  F               D+  +G P+     ++  
Sbjct: 105 I---------------GIVLLIVSQFF---------------DININGYPLLYTLSLLNL 134

Query: 302 WAGLLINAINSIPAGELDGGRIAFALWGRK 331
             G      N IPA  +DGGRI  A+  +K
Sbjct: 135 MLG----GFNLIPAFPMDGGRILRAILSKK 160


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,598,906
Number of Sequences: 62578
Number of extensions: 395179
Number of successful extensions: 796
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 795
Number of HSP's gapped (non-prelim): 3
length of query: 413
length of database: 14,973,337
effective HSP length: 101
effective length of query: 312
effective length of database: 8,652,959
effective search space: 2699723208
effective search space used: 2699723208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)