BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015106
(413 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 18 ILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYXXXXXXXXXXXXXDV 77
ILAA+SP F +F + M ES++ V I+ E E++ F+Y D+
Sbjct: 192 ILAARSPVFSAMFEHEMEESKKNRV--EINDVEPEVFKEMMCFIY-TGKAPNLDKMADDL 248
Query: 78 LMAADKFEVASCMRYCSRLLRNLPMTCESAL 108
L AADK+ L L + CE AL
Sbjct: 249 LAAADKY-----------ALERLKVMCEDAL 268
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 76/195 (38%), Gaps = 15/195 (7%)
Query: 18 ILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEA----ALMELLNFMYXXXXXXXXXXX 73
+LAA + +F L S ES V +R +SE + ++ +MY
Sbjct: 71 VLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSV 130
Query: 74 XXDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQF 133
+VL AD+F + +C L+ + + + L ++ D ++
Sbjct: 131 H-EVLELADRFLLIRLKEFCGEFLKK-KLHLSNCVAIHSLAHMYTLSQLALKAADMIRRN 188
Query: 134 LAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERRE 193
+D EE LP I L+ ++ + SE+ +++ LKW + + E RE
Sbjct: 189 FHKVIQD-----EEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRN----AEERE 239
Query: 194 ILGSRLGRLIRFPYM 208
L +L+R M
Sbjct: 240 RYFEELFKLLRLSQM 254
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 18 ILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYXXXXXXXXXXXXXDV 77
ILAA+SP F +F + M ES++ V I+ E E++ F+Y D+
Sbjct: 43 ILAARSPVFSAMFEHEMEESKKNRV--EINDVEPEVFKEMMCFIY-TGKAPNLDKMADDL 99
Query: 78 LMAADKFEVASCMRYCSRLLRNLPMTCESAL 108
L AADK+ L L + CE AL
Sbjct: 100 LAAADKY-----------ALERLKVMCEDAL 119
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 18 ILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYXXXXXXXXXXXXXDV 77
+LAA S +F KLF++G +Q + ++E AL L++F Y D+
Sbjct: 53 VLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAE--ALTALMDFAY-TATLTVSTANVGDI 109
Query: 78 LMAADKFEVASCMRYCSRLL 97
L AA E+ + C+ LL
Sbjct: 110 LSAARLLEIPAVSHVCADLL 129
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 33.9 bits (76), Expect = 0.16, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 18 ILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYXXXXXXXXXXXXXDV 77
+LAA S +F KLF++G +Q + ++E AL L++F Y D+
Sbjct: 43 VLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAE--ALTALMDFAY-TATLTVSTANVGDI 99
Query: 78 LMAADKFEVASCMRYCSRLL 97
L AA E+ + C+ LL
Sbjct: 100 LSAARLLEIPAVSHVCADLL 119
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 13/191 (6%)
Query: 18 ILAAKSPFFYKLFSNGMRESEQRYVTLRIHASE---EAALMELLNFMYXXXXXXXXXXXX 74
+LAA + +F L S ES V R +SE E +E +
Sbjct: 53 VLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEPGPEPDTVEAVIEYXYTGRIRVSTGSV 112
Query: 75 XDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFL 134
+VL AD+F + +C L+ + + + L ++ D ++
Sbjct: 113 HEVLELADRFLLIRLKEFCGEFLKK-KLHLSNCVAIHSLAHXYTLSQLALKAADXIRRNF 171
Query: 135 AARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREI 194
+D EE LP I L+ ++ + SE+ +++ LKW + + E RE
Sbjct: 172 HKVIQD-----EEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRN----AEERER 222
Query: 195 LGSRLGRLIRF 205
L +L+R
Sbjct: 223 YFEELFKLLRL 233
>pdb|2F6U|A Chain A, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
Phosphate Synthase Complexed With Citrate
pdb|2F6U|B Chain B, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
Phosphate Synthase Complexed With Citrate
pdb|2F6X|A Chain A, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
Phosphate Synthase Complexed With Sn-G1p And Mpd
pdb|2F6X|B Chain B, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
Phosphate Synthase Complexed With Sn-G1p And Mpd
Length = 234
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 165 LQIASEDAVYDFALKWARTHYPKLEERREILGSRL----GRLIRFPYMTCRKLKKVLTCN 220
L A D + +W R HY L++ EI+ S G ++ P ++ K L CN
Sbjct: 87 LNSADGDWITGKHAQWVRMHYENLQKFTEIIESEFIQIEGYIVLNPDSAVARVTKAL-CN 145
Query: 221 DFDPELASK--VVLESLF 236
D ELA+ +V E LF
Sbjct: 146 -IDKELAASYALVGEKLF 162
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33,
FORM II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33,
FORM I
Length = 124
Score = 28.1 bits (61), Expect = 9.0, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 2 DLSTVLRVKTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFM 61
D++ ++ + IL+A S +F++LFS + E ++ I A E+LN++
Sbjct: 35 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQVVELSFIRAEIFA-------EILNYI 87
Query: 62 Y 62
Y
Sbjct: 88 Y 88
>pdb|2NV2|B Chain B, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|D Chain D, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|F Chain F, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|H Chain H, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|J Chain J, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|L Chain L, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|N Chain N, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|P Chain P, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|R Chain R, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|T Chain T, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|V Chain V, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|X Chain X, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
Length = 204
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 164 DLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCNDFD 223
DL I D + A H + E E+L GR++ K + L C+ F+
Sbjct: 119 DLTIKGLDEPFTGVFIRA-PHILEAGENVEVLSEHNGRIV------AAKQGQFLGCS-FN 170
Query: 224 PELASKVVLESLFFKAETPYRQRALAAE 251
PEL + LF + Y+Q+AL E
Sbjct: 171 PELTEDHRVTQLFVEMVEEYKQKALVLE 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,900,243
Number of Sequences: 62578
Number of extensions: 420669
Number of successful extensions: 1110
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1110
Number of HSP's gapped (non-prelim): 12
length of query: 413
length of database: 14,973,337
effective HSP length: 101
effective length of query: 312
effective length of database: 8,652,959
effective search space: 2699723208
effective search space used: 2699723208
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)