Query 015106
Match_columns 413
No_of_seqs 318 out of 2078
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:10:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015106.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015106hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 1.5E-54 3.4E-59 449.5 30.5 290 1-306 35-339 (571)
2 PHA02713 hypothetical protein; 100.0 7.3E-49 1.6E-53 408.2 31.4 271 2-306 25-310 (557)
3 PHA02790 Kelch-like protein; P 100.0 1.3E-47 2.8E-52 393.2 31.8 278 2-306 22-325 (480)
4 PHA03098 kelch-like protein; P 100.0 6.5E-46 1.4E-50 386.8 32.2 288 2-306 9-349 (534)
5 KOG4350 Uncharacterized conser 100.0 1E-30 2.3E-35 247.0 11.8 207 2-224 44-254 (620)
6 KOG2075 Topoisomerase TOP1-int 99.9 1.4E-23 3.1E-28 203.3 14.1 284 2-311 114-415 (521)
7 KOG4682 Uncharacterized conser 99.8 7E-20 1.5E-24 173.9 12.5 173 2-182 69-246 (488)
8 PF07707 BACK: BTB And C-termi 99.7 1.4E-18 3.1E-23 140.9 5.1 103 107-218 1-103 (103)
9 PF00651 BTB: BTB/POZ domain; 99.7 2.8E-17 6E-22 135.0 8.4 95 2-99 10-109 (111)
10 smart00225 BTB Broad-Complex, 99.7 5E-16 1.1E-20 121.4 9.0 88 4-94 1-90 (90)
11 smart00875 BACK BTB And C-term 99.6 5.6E-16 1.2E-20 124.8 9.0 99 107-215 1-99 (101)
12 KOG4591 Uncharacterized conser 99.6 8.2E-16 1.8E-20 133.6 9.5 152 1-164 65-222 (280)
13 KOG0783 Uncharacterized conser 99.5 3.4E-14 7.3E-19 145.4 5.7 136 1-143 711-852 (1267)
14 KOG4441 Proteins containing BT 98.3 1.1E-06 2.3E-11 92.3 8.1 107 262-377 381-505 (571)
15 KOG0783 Uncharacterized conser 98.2 2.2E-06 4.7E-11 89.2 6.9 94 2-95 558-683 (1267)
16 KOG0511 Ankyrin repeat protein 98.2 1.8E-06 3.9E-11 82.7 5.8 134 11-151 302-442 (516)
17 PHA03098 kelch-like protein; P 98.2 1.7E-05 3.8E-10 83.0 13.3 45 262-306 343-396 (534)
18 PHA02790 Kelch-like protein; P 97.9 8.8E-05 1.9E-09 76.7 11.2 45 262-306 319-369 (480)
19 KOG2716 Polymerase delta-inter 97.9 6.5E-05 1.4E-09 68.8 9.0 92 5-99 7-103 (230)
20 PHA02713 hypothetical protein; 97.9 9.7E-05 2.1E-09 77.7 11.2 45 262-306 352-405 (557)
21 PF11822 DUF3342: Domain of un 97.7 5.5E-05 1.2E-09 72.1 5.4 88 10-99 14-102 (317)
22 PF02214 BTB_2: BTB/POZ domain 97.6 0.00012 2.6E-09 58.0 5.4 86 5-93 1-94 (94)
23 KOG2838 Uncharacterized conser 97.5 6.5E-05 1.4E-09 69.2 2.5 96 11-108 262-394 (401)
24 KOG2838 Uncharacterized conser 97.4 0.00011 2.5E-09 67.6 3.8 83 4-86 134-218 (401)
25 smart00612 Kelch Kelch domain. 97.2 0.00038 8.3E-09 46.9 3.7 32 269-300 13-47 (47)
26 KOG1987 Speckle-type POZ prote 97.0 0.0003 6.5E-09 67.9 1.9 124 11-142 111-239 (297)
27 KOG3473 RNA polymerase II tran 96.9 0.0057 1.2E-07 47.7 7.6 72 11-86 28-112 (112)
28 TIGR03547 muta_rot_YjhT mutatr 96.7 0.003 6.4E-08 62.3 5.8 36 271-306 168-207 (346)
29 TIGR03547 muta_rot_YjhT mutatr 96.5 0.0034 7.5E-08 61.9 5.0 39 271-313 290-331 (346)
30 smart00512 Skp1 Found in Skp1 96.3 0.013 2.8E-07 47.3 6.6 78 5-86 4-104 (104)
31 PLN02153 epithiospecifier prot 96.0 0.011 2.5E-07 58.1 5.9 45 262-306 86-144 (341)
32 PRK14131 N-acetylneuraminic ac 96.0 0.011 2.4E-07 59.2 5.8 37 271-307 189-229 (376)
33 TIGR03548 mutarot_permut cycli 96.0 0.013 2.7E-07 57.3 6.0 45 262-306 124-178 (323)
34 PRK14131 N-acetylneuraminic ac 95.9 0.0094 2E-07 59.6 4.6 37 272-312 313-352 (376)
35 cd03774 MATH_SPOP Speckle-type 95.8 0.054 1.2E-06 46.0 8.5 112 299-413 22-138 (139)
36 KOG4693 Uncharacterized conser 95.7 0.015 3.3E-07 54.1 4.7 50 260-313 87-149 (392)
37 PLN02153 epithiospecifier prot 95.4 0.028 6E-07 55.4 5.9 39 270-312 216-260 (341)
38 cd03772 MATH_HAUSP Herpesvirus 95.4 0.16 3.5E-06 42.9 9.9 111 299-412 16-133 (137)
39 PF13964 Kelch_6: Kelch motif 95.4 0.018 4E-07 39.6 3.3 30 261-290 11-50 (50)
40 KOG1665 AFH1-interacting prote 95.3 0.048 1E-06 49.3 6.2 69 24-95 34-105 (302)
41 PF00917 MATH: MATH domain; I 95.2 0.068 1.5E-06 43.5 6.7 98 305-411 17-119 (119)
42 TIGR03548 mutarot_permut cycli 95.2 0.023 5E-07 55.5 4.4 37 271-311 271-311 (323)
43 KOG2714 SETA binding protein S 95.0 0.097 2.1E-06 51.8 7.9 83 5-91 13-102 (465)
44 PLN02193 nitrile-specifier pro 94.8 0.053 1.1E-06 56.0 6.2 44 262-305 229-284 (470)
45 KOG1724 SCF ubiquitin ligase, 94.7 0.06 1.3E-06 47.0 5.1 97 11-112 16-140 (162)
46 cd00121 MATH MATH (meprin and 94.5 0.2 4.2E-06 40.7 7.9 108 298-410 14-126 (126)
47 KOG0379 Kelch repeat-containin 94.0 0.34 7.4E-06 50.2 10.0 52 269-320 188-245 (482)
48 PLN02193 nitrile-specifier pro 93.8 0.1 2.2E-06 53.9 5.7 47 262-312 329-386 (470)
49 PF13415 Kelch_3: Galactose ox 93.7 0.11 2.4E-06 35.5 3.9 29 270-298 18-49 (49)
50 KOG0379 Kelch repeat-containin 93.1 0.6 1.3E-05 48.4 9.9 35 270-304 138-178 (482)
51 PF03931 Skp1_POZ: Skp1 family 93.0 0.55 1.2E-05 33.9 6.9 53 5-62 3-58 (62)
52 cd03775 MATH_Ubp21p Ubiquitin- 92.8 0.95 2.1E-05 38.1 9.1 106 299-409 14-133 (134)
53 PF13854 Kelch_5: Kelch motif 92.4 0.15 3.3E-06 33.7 3.0 24 286-313 1-24 (42)
54 PF01344 Kelch_1: Kelch motif; 92.2 0.31 6.8E-06 32.6 4.5 22 289-310 1-22 (47)
55 cd03773 MATH_TRIM37 Tripartite 92.2 0.7 1.5E-05 38.6 7.6 105 299-409 21-129 (132)
56 PF01344 Kelch_1: Kelch motif; 92.0 0.15 3.4E-06 34.2 2.7 26 262-287 12-44 (47)
57 PF13964 Kelch_6: Kelch motif 91.2 0.31 6.7E-06 33.3 3.6 21 289-313 1-21 (50)
58 PF01466 Skp1: Skp1 family, di 91.2 0.34 7.4E-06 36.8 4.2 43 72-114 14-58 (78)
59 PF07646 Kelch_2: Kelch motif; 87.7 0.57 1.2E-05 31.9 2.8 20 289-312 1-20 (49)
60 KOG2715 Uncharacterized conser 87.4 1.5 3.2E-05 38.1 5.6 92 5-99 23-120 (210)
61 KOG0511 Ankyrin repeat protein 87.4 0.22 4.7E-06 48.6 0.6 83 4-91 151-236 (516)
62 KOG4693 Uncharacterized conser 86.9 1 2.2E-05 42.3 4.6 48 262-313 251-312 (392)
63 COG5201 SKP1 SCF ubiquitin lig 84.7 2.2 4.8E-05 35.3 5.1 84 11-99 13-120 (158)
64 PLN02772 guanylate kinase 83.5 2.1 4.6E-05 42.9 5.5 45 262-306 35-93 (398)
65 KOG1778 CREB binding protein/P 80.3 1.3 2.7E-05 43.1 2.5 130 11-148 37-167 (319)
66 cd00270 MATH_TRAF_C Tumor Necr 79.7 25 0.00054 29.8 10.3 109 299-409 22-148 (149)
67 KOG4152 Host cell transcriptio 77.3 4 8.6E-05 41.7 5.0 37 268-304 291-337 (830)
68 KOG1230 Protein containing rep 72.6 6.6 0.00014 39.2 5.1 39 270-312 206-251 (521)
69 PF07707 BACK: BTB And C-termi 72.2 12 0.00026 29.2 5.9 63 75-139 2-75 (103)
70 KOG2723 Uncharacterized conser 69.9 17 0.00037 33.4 6.9 86 7-95 13-104 (221)
71 smart00061 MATH meprin and TRA 68.5 31 0.00068 26.0 7.5 76 298-381 14-93 (95)
72 cd03776 MATH_TRAF6 Tumor Necro 67.9 31 0.00066 29.3 7.9 105 302-410 25-147 (147)
73 PF11822 DUF3342: Domain of un 60.9 4.2 9.1E-05 39.3 1.2 56 101-160 71-126 (317)
74 PF13418 Kelch_4: Galactose ox 57.5 10 0.00023 25.3 2.5 19 268-286 26-44 (49)
75 PF13418 Kelch_4: Galactose ox 56.8 10 0.00022 25.3 2.3 21 289-313 1-22 (49)
76 PF07713 DUF1604: Protein of u 50.7 6.9 0.00015 30.2 0.7 17 370-386 23-39 (87)
77 KOG4350 Uncharacterized conser 50.5 24 0.00052 35.3 4.5 28 72-99 148-175 (620)
78 KOG1230 Protein containing rep 49.3 21 0.00046 35.8 3.9 34 271-304 98-137 (521)
79 COG3055 Uncharacterized protei 47.3 21 0.00045 35.1 3.5 38 270-311 112-154 (381)
80 KOG4152 Host cell transcriptio 46.7 36 0.00079 35.1 5.2 117 272-399 231-396 (830)
81 KOG3840 Uncharaterized conserv 44.1 19 0.00041 34.5 2.6 76 11-87 106-185 (438)
82 cd03781 MATH_TRAF4 Tumor Necro 39.4 2.4E+02 0.0052 24.0 10.0 25 385-409 125-153 (154)
83 cd03780 MATH_TRAF5 Tumor Necro 32.2 2.3E+02 0.005 24.2 7.4 53 301-353 24-83 (148)
84 cd03777 MATH_TRAF3 Tumor Necro 30.9 3.9E+02 0.0084 23.8 10.0 39 301-339 62-102 (186)
85 PF13570 PQQ_3: PQQ-like domai 25.7 82 0.0018 19.9 2.7 24 281-305 3-27 (40)
86 PF02762 Cbl_N3: CBL proto-onc 23.9 54 0.0012 24.7 1.7 18 367-384 26-49 (86)
87 PF13028 DUF3889: Protein of u 22.6 1.1E+02 0.0023 24.4 3.2 35 340-377 37-74 (97)
88 KOG3713 Voltage-gated K+ chann 20.6 1.9E+02 0.0041 29.8 5.3 55 38-95 79-134 (477)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.5e-54 Score=449.49 Aligned_cols=290 Identities=21% Similarity=0.376 Sum_probs=270.5
Q ss_pred CCCcEEEEE--eEEEeehhhhcccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHHH
Q 015106 1 MDLSTVLRV--KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVL 78 (413)
Q Consensus 1 ~~cDV~l~v--~~f~aHk~iLaa~S~yF~~mf~~~~~Es~~~~i~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~LL 78 (413)
.+|||+|.+ ++|+|||.||||+||||++||+++++|+.+++|+|. ++++.+++.+++|+|||++.|+. +||++||
T Consensus 35 ~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~--~v~~~~l~~ll~y~Yt~~i~i~~-~nVq~ll 111 (571)
T KOG4441|consen 35 LLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLE--GVDPETLELLLDYAYTGKLEISE-DNVQELL 111 (571)
T ss_pred CCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEe--cCCHHHHHHHHHHhhcceEEech-HhHHHHH
Confidence 379999999 579999999999999999999999999999999999 89999999999999999999998 9999999
Q ss_pred HHHhhhchhhHHHHHhHchhccCCChhhHHHHhhcccchHhhhccHHHHHHHHHHHHhhcccccccchhhcCCCHHHHHH
Q 015106 79 MAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEA 158 (413)
Q Consensus 79 ~aA~~lqv~~L~~~C~~~L~~~~l~~~n~l~i~~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~~efl~L~~~~l~~ 158 (413)
.+|++||++.+++.|++||.+ +++++||+.+..+|+ .+++.+|.+.+..||.+||.++.+ ++||++||.+++..
T Consensus 112 ~aA~~lQi~~v~~~C~~fL~~-~l~~~Nclgi~~~a~----~~~~~~L~~~a~~~i~~~F~~v~~-~eefl~L~~~~l~~ 185 (571)
T KOG4441|consen 112 EAASLLQIPEVVDACCEFLES-QLDPSNCLGIRRFAE----LHSCTELLEVADEYILQHFAEVSK-TEEFLLLSLEELIG 185 (571)
T ss_pred HHHHHhhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHH----hcCcHHHHHHHHHHHHHHHHHHhc-cHHhhCCCHHHHHh
Confidence 999999999999999999999 899999999999986 579999999999999999999999 99999999999999
Q ss_pred hhcCCCCCCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHhhccccCCCCCHHHHHhhccCCCCCc--hHHHHHHHHHHH
Q 015106 159 VLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCNDFDP--ELASKVVLESLF 236 (413)
Q Consensus 159 lL~sd~L~v~sE~~v~~av~~Wi~~~~~~~~~R~~~l~~~Ll~~VRf~lls~~~L~~~~~~~~~~~--~~~~~lv~ea~~ 236 (413)
||++|.|+|.+|.+||+++++|+++| .++|++++ +.++++||+|+|++++|.+.+...+++. ..|++++.+|++
T Consensus 186 ll~~d~l~v~~E~~vf~a~~~Wv~~d---~~~R~~~~-~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~ 261 (571)
T KOG4441|consen 186 LLSSDDLNVDSEEEVFEAAMRWVKHD---FEEREEHL-PALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKK 261 (571)
T ss_pred hccccCCCcCCHHHHHHHHHHHHhcC---HhhHHHHH-HHHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence 99999999999999999999999998 78899999 9999999999999999999999888764 789999999999
Q ss_pred hhcCCcchhhhhhhccccCCCc-ccceEEEEec-------CCceEEEecCCCCeeEe---ccccccceeEEeeCCeEEEe
Q 015106 237 FKAETPYRQRALAAEEANSTYR-RFVERAYKYR-------PVKVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQ 305 (413)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~r-~~~~~l~~~~-------~~~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~iY~~ 305 (413)
||..| .+++.++.++++| | ...+.||+.+ ...+||+|||.+++|.. ||.+|.++++++++|+||++
T Consensus 262 ~~~~~-~~~~~~~~~~t~~--r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~ 338 (571)
T KOG4441|consen 262 YHLLP-QRRPVMQSPRTRP--RRSVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVV 338 (571)
T ss_pred HhhCc-ccCccccCCCccc--CcCCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEE
Confidence 99875 4556688899988 7 4557888732 35789999999999999 99999999999999999994
Q ss_pred e
Q 015106 306 A 306 (413)
Q Consensus 306 ~ 306 (413)
|
T Consensus 339 G 339 (571)
T KOG4441|consen 339 G 339 (571)
T ss_pred c
Confidence 4
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=7.3e-49 Score=408.23 Aligned_cols=271 Identities=13% Similarity=0.144 Sum_probs=234.5
Q ss_pred CCcEEEEEe---EEEeehhhhcccCHHHHHhhcCCCCCCC-ccEEEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHH
Q 015106 2 DLSTVLRVK---TVHISSPILAAKSPFFYKLFSNGMRESE-QRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDV 77 (413)
Q Consensus 2 ~cDV~l~v~---~f~aHk~iLaa~S~yF~~mf~~~~~Es~-~~~i~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~L 77 (413)
+|||+|.++ +|+|||+||||+|+||++||+++|+|+. +++|+|+ ++++++|+.+|+|+|||+ ++. +||++|
T Consensus 25 l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~--~v~~~~~~~ll~y~Yt~~--i~~-~nv~~l 99 (557)
T PHA02713 25 LCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQ--MFDKDAVKNIVQYLYNRH--ISS-MNVIDV 99 (557)
T ss_pred CCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEec--cCCHHHHHHHHHHhcCCC--CCH-HHHHHH
Confidence 799999984 6999999999999999999999999875 7899998 999999999999999998 565 899999
Q ss_pred HHHHhhhchhhHHHHHhHchhccCCChhhHHHHhhcccchHhhhccHHHHHHHHHHHHhhcccccccchhhcCCCHHHHH
Q 015106 78 LMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIE 157 (413)
Q Consensus 78 L~aA~~lqv~~L~~~C~~~L~~~~l~~~n~l~i~~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~~efl~L~~~~l~ 157 (413)
|.+|++||++.|++.|++||.+ +++++||+.++.++. .+.+.+|.++|.+||++||.++.+ +++|++|+.+.|.
T Consensus 100 l~aA~~lqi~~l~~~C~~~l~~-~l~~~NCl~i~~~~~----~~~~~~L~~~a~~~i~~~f~~v~~-~~ef~~L~~~~l~ 173 (557)
T PHA02713 100 LKCADYLLIDDLVTDCESYIKD-YTNHDTCIYMYHRLY----EMSHIPIVKYIKRMLMSNIPTLIT-TDAFKKTVFEILF 173 (557)
T ss_pred HHHHHHHCHHHHHHHHHHHHHh-hCCccchHHHHHHHH----hccchHHHHHHHHHHHHHHHHHhC-ChhhhhCCHHHHH
Confidence 9999999999999999999999 899999999997654 356778999999999999999999 9999999999999
Q ss_pred HhhcCCC-CCCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHhhccccCCCCCHHHHHhhccCCCCC--chHHHHHHHHH
Q 015106 158 AVLASDD-LQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCNDFD--PELASKVVLES 234 (413)
Q Consensus 158 ~lL~sd~-L~v~sE~~v~~av~~Wi~~~~~~~~~R~~~l~~~Ll~~VRf~lls~~~L~~~~~~~~~~--~~~~~~lv~ea 234 (413)
+||++|+ |+|.+|++||+|+++|++|| .++|. ++ .+||++||||+|++.++. .+.+++++ .+.|.+++.++
T Consensus 174 ~lL~~d~~l~v~~Ee~v~eav~~W~~~d---~~~r~-~~-~~ll~~VR~~~l~~~~~~-~~~~~~~i~~~~~c~~~l~~a 247 (557)
T PHA02713 174 DIISTNDNVYLYREGYKVTILLKWLEYN---YITEE-QL-LCILSCIDIQNLDKKSRL-LLYSNKTINMYPSCIQFLLDN 247 (557)
T ss_pred HHhccccccCCCcHHHHHHHHHHHHhcC---HHHHH-HH-hhhHhhhhHhhcchhhhh-hhcchHHHHhhHHHHHHHhhh
Confidence 9999987 79999999999999999998 55554 46 699999999999999887 45555554 37899999887
Q ss_pred HHhhcCCcchhhhhhhccccCCCcccceEEEEec-----CCceEEEecCCCCeeEe---ccccccceeEEeeCCeEEEee
Q 015106 235 LFFKAETPYRQRALAAEEANSTYRRFVERAYKYR-----PVKVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQA 306 (413)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~-----~~~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~iY~~~ 306 (413)
+.++. +.| |. ..+++.+ ....+++|||.+++|.. ||.+|.++++++++|+||++|
T Consensus 248 ~~~~~-------------~~~--r~--~~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviG 310 (557)
T PHA02713 248 KQNRN-------------IIP--RQ--LCLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAG 310 (557)
T ss_pred hhhcc-------------cCC--cc--eEEEEecCccccCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEc
Confidence 64321 123 32 3344422 23578999999999998 888999999999999999943
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=1.3e-47 Score=393.17 Aligned_cols=278 Identities=16% Similarity=0.200 Sum_probs=225.4
Q ss_pred CCcEEEEE-eEEEeehhhhcccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHHHHH
Q 015106 2 DLSTVLRV-KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMA 80 (413)
Q Consensus 2 ~cDV~l~v-~~f~aHk~iLaa~S~yF~~mf~~~~~Es~~~~i~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~LL~a 80 (413)
+|||++.+ ++|+|||+|||++|||||+||+++|+|+.+ +|.+...++++++|+.+|+|+|||++.++. +||++||.|
T Consensus 22 ~~~~~~~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~-~nV~~ll~a 99 (480)
T PHA02790 22 FKTIIEAIGGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDS-HNVVNLLRA 99 (480)
T ss_pred hceEEEEcCcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEec-ccHHHHHHH
Confidence 69999999 579999999999999999999999999965 566632389999999999999999999998 999999999
Q ss_pred HhhhchhhHHHHHhHchhccCCChhhHHHHhhcccchHhhhccHHHHHHHHHHHHhhcccccccc--hhhcCCCHHHHHH
Q 015106 81 ADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQ--EEVLNLPLAGIEA 158 (413)
Q Consensus 81 A~~lqv~~L~~~C~~~L~~~~l~~~n~l~i~~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~--~efl~L~~~~l~~ 158 (413)
|++||++++++.|++||.+ +|+++||+.++.+|+ .+++.+|.++|.+||.+||.++.+ + ++|+.||. .+
T Consensus 100 A~~Lqi~~v~~~C~~fL~~-~l~~~NCl~i~~~A~----~y~~~~L~~~a~~fi~~nF~~v~~-~~~~ef~~L~~---~~ 170 (480)
T PHA02790 100 SILTSVEFIIYTCINFILR-DFRKEYCVECYMMGI----EYGLSNLLCHTKDFIAKHFLELED-DIIDNFDYLSM---KL 170 (480)
T ss_pred HHHhChHHHHHHHHHHHHh-hCCcchHHHHHHHHH----HhCHHHHHHHHHHHHHHhHHHHhc-ccchhhhhCCH---HH
Confidence 9999999999999999999 899999999999997 579999999999999999999997 6 89999996 68
Q ss_pred hhcCCCCCCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcc-ccCCCCCHHHHHhhccCCCCCchHHHHHHHHHHHh
Q 015106 159 VLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRL-IRFPYMTCRKLKKVLTCNDFDPELASKVVLESLFF 237 (413)
Q Consensus 159 lL~sd~L~v~sE~~v~~av~~Wi~~~~~~~~~R~~~l~~~Ll~~-VRf~lls~~~L~~~~~~~~~~~~~~~~lv~ea~~~ 237 (413)
||++|+|+|.+|++||+++++|++++ .+|...+ .+++++ ||+++|++..+.+ +..++.++..+
T Consensus 171 lLssd~L~v~~Ee~V~eav~~Wl~~~----~~~~~~l-~~~vr~~ir~~~l~~~~l~~-----------~~~~~~~~~~~ 234 (480)
T PHA02790 171 ILESDELNVPDEDYVVDFVIKWYMKR----RNRLGNL-LLLIKNVIRSNYLSPRGINN-----------VKWILDCTKIF 234 (480)
T ss_pred hcccccCCCccHHHHHHHHHHHHHhh----HHHHHHH-HHHHHhcCChhhCCHHHHHH-----------HHHHHHHHHHh
Confidence 99999999999999999999999986 3465555 566666 8999999888753 23344455444
Q ss_pred hcCCcchh----hhh-hhccc-------cC-CCcccceEEEEec------CCceEEEecCCCCeeEe---ccccccceeE
Q 015106 238 KAETPYRQ----RAL-AAEEA-------NS-TYRRFVERAYKYR------PVKVVEFELPRQQCVVY---LDLKREECAH 295 (413)
Q Consensus 238 ~~~~~~~~----~~~-~~~~~-------~~-~~r~~~~~l~~~~------~~~~ve~ydp~~~~W~~---l~~~r~~~~~ 295 (413)
+..+..+. +.. ..+.. .. ......+.+|+.+ ..++|++|||.+++|.. |+.+|..+++
T Consensus 235 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~ 314 (480)
T PHA02790 235 HCDKQPRKSYKYPFIEYPMNMDQIIDIFHMCTSTHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASG 314 (480)
T ss_pred hccccccccccccccccCCcccceeeccCCcceEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceE
Confidence 42210000 000 00000 00 0001235677733 35789999999999999 8889999999
Q ss_pred EeeCCeEEEee
Q 015106 296 LFPAGRIYSQA 306 (413)
Q Consensus 296 ~~~~g~iY~~~ 306 (413)
++++|+||++|
T Consensus 315 v~~~~~iYviG 325 (480)
T PHA02790 315 VPANNKLYVVG 325 (480)
T ss_pred EEECCEEEEEC
Confidence 99999999944
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=6.5e-46 Score=386.80 Aligned_cols=288 Identities=15% Similarity=0.234 Sum_probs=242.9
Q ss_pred CCcEEEEE----eEEEeehhhhcccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHH
Q 015106 2 DLSTVLRV----KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDV 77 (413)
Q Consensus 2 ~cDV~l~v----~~f~aHk~iLaa~S~yF~~mf~~~~~Es~~~~i~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~L 77 (413)
+|||+|.+ ++|+|||.|||++|+||++||+++|+ +++|+|+ + ++++|+.+|+|+|||++.++. +++++|
T Consensus 9 ~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~--~-~~~~~~~~l~y~Ytg~~~i~~-~~~~~l 81 (534)
T PHA03098 9 FCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLN--I-DYDSFNEVIKYIYTGKINITS-NNVKDI 81 (534)
T ss_pred CCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEec--C-CHHHHHHHHHHhcCCceEEcH-HHHHHH
Confidence 79999998 47999999999999999999999998 6789988 7 999999999999999999987 999999
Q ss_pred HHHHhhhchhhHHHHHhHchhccCCChhhHHHHhhcccchHhhhccHHHHHHHHHHHHhhcccccccchhhcCCCHHHHH
Q 015106 78 LMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIE 157 (413)
Q Consensus 78 L~aA~~lqv~~L~~~C~~~L~~~~l~~~n~l~i~~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~~efl~L~~~~l~ 157 (413)
|.+|++||++.|++.|++||.+ .++.+||+.++.+|+ .+++.+|.++|.+||.+||.++.+ +++|++||.+.+.
T Consensus 82 l~~A~~l~~~~l~~~C~~~l~~-~l~~~nc~~~~~~a~----~~~~~~L~~~~~~~i~~nf~~v~~-~~~f~~l~~~~l~ 155 (534)
T PHA03098 82 LSIANYLIIDFLINLCINYIIK-IIDDNNCIDIYRFSF----FYGCKKLYSAAYNYIRNNIELIYN-DPDFIYLSKNELI 155 (534)
T ss_pred HHHHHHhCcHHHHHHHHHHHHH-hCCHhHHHHHHHHHH----HcCcHHHHHHHHHHHHHHHHHHhc-CchhhcCCHHHHH
Confidence 9999999999999999999999 899999999999986 579999999999999999999999 9999999999999
Q ss_pred HhhcCCCCCCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHhhccccCCCCCHHHHHhhcc------CCCCC-chHHHHH
Q 015106 158 AVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLT------CNDFD-PELASKV 230 (413)
Q Consensus 158 ~lL~sd~L~v~sE~~v~~av~~Wi~~~~~~~~~R~~~l~~~Ll~~VRf~lls~~~L~~~~~------~~~~~-~~~~~~l 230 (413)
.||++|+|+|.+|++||+++++|++++ .++|.+++ ++|+++||||+|++++|.+++. .++++ .+.|..+
T Consensus 156 ~ll~~~~L~v~~E~~v~~av~~W~~~~---~~~r~~~~-~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 231 (534)
T PHA03098 156 KILSDDKLNVSSEDVVLEIIIKWLTSK---KNNKYKDI-CLILKVLRITFLSEEGIKKLKRWKLRIKKKKIVFNKRCIKI 231 (534)
T ss_pred HHhcCCCcCcCCHHHHHHHHHHHHhcC---hhhhHhHH-HHHHhhccccccCHHHHHHHHHHHhhcCCcceeccccchHH
Confidence 999999999999999999999999998 78899998 8999999999999999998764 44443 3678888
Q ss_pred HHHHHHhhcCCcchhh----h--------------------hh---hccccCCCccc-----ceEEEEec-------CCc
Q 015106 231 VLESLFFKAETPYRQR----A--------------------LA---AEEANSTYRRF-----VERAYKYR-------PVK 271 (413)
Q Consensus 231 v~ea~~~~~~~~~~~~----~--------------------~~---~~~~~~~~r~~-----~~~l~~~~-------~~~ 271 (413)
+.++..++.....+.+ . .+ .....|....+ .+.+|+.+ ..+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~ 311 (534)
T PHA03098 232 IYSKKYNLNKILPRSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNKNNLSVN 311 (534)
T ss_pred HHHHHhcccCCCcCccCCCcceEeecccchhhceeeecchhhhhcccccCccccccceEEEECCEEEEECCCcCCCCeec
Confidence 8887765421000000 0 00 00001100111 14567632 245
Q ss_pred eEEEecCCCCeeEe---ccccccceeEEeeCCeEEEee
Q 015106 272 VVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQA 306 (413)
Q Consensus 272 ~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~iY~~~ 306 (413)
.+.+|||.+++|.. ||.+|.++++++++|+||++|
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~G 349 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIG 349 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEe
Confidence 79999999999998 778999999999999999944
No 5
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.97 E-value=1e-30 Score=247.00 Aligned_cols=207 Identities=23% Similarity=0.328 Sum_probs=189.4
Q ss_pred CCcEEEEE--eEEEeehhhhcccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHccCcccCCC--hhhHHHH
Q 015106 2 DLSTVLRV--KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTT--PTALLDV 77 (413)
Q Consensus 2 ~cDV~l~v--~~f~aHk~iLaa~S~yF~~mf~~~~~Es~~~~i~L~~~~v~~~~f~~lL~fiYtg~i~i~~--~~~v~~L 77 (413)
.+||+++| ++|+|||.|||++|.|||+|+.+||.|+.|..|.|+ +-..++|+.+|+|||||++.+.. .+...+.
T Consensus 44 y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq--~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~ 121 (620)
T KOG4350|consen 44 YSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQ--ETNSEAFRALLRYIYTGKIDLAGVEEDILLDY 121 (620)
T ss_pred ccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccc--cccHHHHHHHHHHHhhcceecccchHHHHHHH
Confidence 47999999 469999999999999999999999999999999998 77899999999999999998765 3678999
Q ss_pred HHHHhhhchhhHHHHHhHchhccCCChhhHHHHhhcccchHhhhccHHHHHHHHHHHHhhcccccccchhhcCCCHHHHH
Q 015106 78 LMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIE 157 (413)
Q Consensus 78 L~aA~~lqv~~L~~~C~~~L~~~~l~~~n~l~i~~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~~efl~L~~~~l~ 157 (413)
|.+|++|+++.|..+.++||++ .+..+|.+.+++.|. .+++++|.+.|..|+-+|..++.. .+.|..|+.+.|.
T Consensus 122 LslAh~Ygf~~Le~aiSeYl~~-iL~~~NvCmifdaA~----ly~l~~Lt~~C~mfmDrnA~~lL~-~~sFn~LSk~sL~ 195 (620)
T KOG4350|consen 122 LSLAHRYGFIQLETAISEYLKE-ILKNENVCMIFDAAY----LYQLTDLTDYCMMFMDRNADQLLE-DPSFNRLSKDSLK 195 (620)
T ss_pred HHHHHhcCcHHHHHHHHHHHHH-HHcccceeeeeeHHH----HhcchHHHHHHHHHHhcCHHhhhc-CcchhhhhHHHHH
Confidence 9999999999999999999999 799999999998874 679999999999999999999999 9999999999999
Q ss_pred HhhcCCCCCCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHhhccccCCCCCHHHHHhhccCCCCCc
Q 015106 158 AVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCNDFDP 224 (413)
Q Consensus 158 ~lL~sd~L~v~sE~~v~~av~~Wi~~~~~~~~~R~~~l~~~Ll~~VRf~lls~~~L~~~~~~~~~~~ 224 (413)
++|.+|..- ..|.++|.|+.+|-++| +.+ .. +.+++.||+|+|+.+.|.+++....+..
T Consensus 196 e~l~RDsFf-ApE~~IFlAv~~W~~~N---ske---~~-k~~~~~VRLPLm~lteLLnvVRPsGlls 254 (620)
T KOG4350|consen 196 ELLARDSFF-APELKIFLAVRSWHQNN---SKE---AS-KVLLELVRLPLMTLTELLNVVRPSGLLS 254 (620)
T ss_pred HHHhhhccc-chHHHHHHHHHHHHhcC---chh---hH-HHHHHHHhhhhccHHHHHhccCcccCcC
Confidence 999999886 58999999999999998 322 22 6789999999999999999999887764
No 6
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.90 E-value=1.4e-23 Score=203.33 Aligned_cols=284 Identities=23% Similarity=0.330 Sum_probs=214.3
Q ss_pred CCcEEEEEe-------EEEeehhhhcccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHccCcccCCChhhH
Q 015106 2 DLSTVLRVK-------TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTAL 74 (413)
Q Consensus 2 ~cDV~l~v~-------~f~aHk~iLaa~S~yF~~mf~~~~~Es~~~~i~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v 74 (413)
.+|+.++|+ .|||||.|||..|+.|.+||++++.|+...+|.++ ++++.+|..+|+|||+..+.+.. +++
T Consensus 114 ~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lp--dvepaaFl~~L~flYsdev~~~~-dtv 190 (521)
T KOG2075|consen 114 LADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLP--DVEPAAFLAFLRFLYSDEVKLAA-DTV 190 (521)
T ss_pred cceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecC--CcChhHhHHHHHHHhcchhhhhH-HHH
Confidence 579999984 49999999999999999999999999977888888 99999999999999999999976 999
Q ss_pred HHHHHHHhhhchhhHHHHHhHchhccCCChhhHHHHhhc-ccchHhhhccHHHHHHHHHHHHhhcccccccchhhcCCC-
Q 015106 75 LDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDL-PSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLP- 152 (413)
Q Consensus 75 ~~LL~aA~~lqv~~L~~~C~~~L~~~~l~~~n~l~i~~~-a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~~efl~L~- 152 (413)
+.+|.+|++|-++.|.+.|.+||+. .+...|.+..+-- |. ...-++|.+.|.+-|..+|.+... .+.|.+..
T Consensus 191 i~tl~~AkKY~VpaLer~CVkflr~-~l~~~naf~~L~q~A~----lf~ep~Li~~c~e~id~~~~~al~-~EGf~did~ 264 (521)
T KOG2075|consen 191 ITTLYAAKKYLVPALERQCVKFLRK-NLMADNAFLELFQRAK----LFDEPSLISICLEVIDKSFEDALT-PEGFCDIDS 264 (521)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH-hcCChHHHHHHHHHHH----hhcCHHHHHHHHHHhhhHHHhhhC-ccceeehhh
Confidence 9999999999999999999999999 7877777655543 43 457899999999999999999998 89998888
Q ss_pred -HHHHHHhhcCCCCCCCChHHHHHHHHHHHHhc------CCChHHHHHHHHHHhhccccCCCCCHHHHHhhccCCCCCch
Q 015106 153 -LAGIEAVLASDDLQIASEDAVYDFALKWARTH------YPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCNDFDPE 225 (413)
Q Consensus 153 -~~~l~~lL~sd~L~v~sE~~v~~av~~Wi~~~------~~~~~~R~~~l~~~Ll~~VRf~lls~~~L~~~~~~~~~~~~ 225 (413)
.+.++++|+++.|.+ +|..+|+|+++|++.. +.+.+.+++.+ .+.+..||||.|+.+++..-+++.++..+
T Consensus 265 ~~dt~~evl~r~~l~~-~e~~lfeA~lkw~~~e~~rs~~~~~~~~~~~vl-~~~l~lirfp~m~~Eefa~~~e~sgIl~d 342 (521)
T KOG2075|consen 265 TRDTYEEVLRRDTLEA-REFRLFEAALKWAEAECQRSGGPVNGQNKRKVL-GRALSLIRFPFMNIEEFARGVEQSGILTD 342 (521)
T ss_pred HHHHHHHHHhhcccch-hHHHHHHHHHhhccCcchhhcCCCCccchhhhh-hheeeeecccccchhhhccCccccCCccc
Confidence 999999999999998 5999999999999875 22345667888 89999999999999988765555554321
Q ss_pred HHHHHHHHHHHhhcCCcchhhhhhhccccCCCcccceEEEEecCCceEEEecCC-CCeeEecc-ccccceeEEeeCCeEE
Q 015106 226 LASKVVLESLFFKAETPYRQRALAAEEANSTYRRFVERAYKYRPVKVVEFELPR-QQCVVYLD-LKREECAHLFPAGRIY 303 (413)
Q Consensus 226 ~~~~lv~ea~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~~~ve~ydp~-~~~W~~l~-~~r~~~~~~~~~g~iY 303 (413)
+. ....+.|....| .|... ...++ |.. ...+.+...++|+.. +++|.+.. ..|..| .++.+|+
T Consensus 343 -~e--~~~~F~~~t~~P--~P~l~-f~~~~--ra~----ls~~~~~~~rfqr~~~R~q~~~~g~~D~i~F---~vd~ri~ 407 (521)
T KOG2075|consen 343 -RE--PLKLFLYFTAAP--KPALD-FVSRP--RAG----LSHKKLVRARFQRSETRQQWRYRGTSDRITF---QVDRRIF 407 (521)
T ss_pred -cc--hHhhhhhhccCC--Ccccc-ccCcc--ccc----ccccccchhhhhcchhhhhhcccccccccee---eeeeeEE
Confidence 11 112222222111 11111 01111 211 112334455667544 34688732 222222 4688899
Q ss_pred EeeeeeCC
Q 015106 304 SQAFHLGG 311 (413)
Q Consensus 304 ~~~f~~gg 311 (413)
+.+|++-|
T Consensus 408 IagfGlyg 415 (521)
T KOG2075|consen 408 IAGFGLYG 415 (521)
T ss_pred EEeccccc
Confidence 98885555
No 7
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.82 E-value=7e-20 Score=173.93 Aligned_cols=173 Identities=17% Similarity=0.301 Sum_probs=160.8
Q ss_pred CCcEEEEE--eEEEeehhhhcccCHHHHHhhcCCCCCCCccEEEEecC--CCCHHHHHHHHHHHccCcccCCChhhHHHH
Q 015106 2 DLSTVLRV--KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIH--ASEEAALMELLNFMYSSTLSTTTPTALLDV 77 (413)
Q Consensus 2 ~cDV~l~v--~~f~aHk~iLaa~S~yF~~mf~~~~~Es~~~~i~L~~~--~v~~~~f~~lL~fiYtg~i~i~~~~~v~~L 77 (413)
.+||++.+ .+.+.||.-|.. |+||.+||+|.|+|++++.|.|.|+ .++..+|..++.-+|.+++.|.. +.|..+
T Consensus 69 nSDv~l~alg~eWrlHk~yL~Q-S~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l-~dv~gv 146 (488)
T KOG4682|consen 69 NSDVILEALGFEWRLHKPYLFQ-SEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKL-SDVVGV 146 (488)
T ss_pred Ccceehhhccceeeeeeeeeec-cHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccH-HHHHHH
Confidence 58999988 579999999975 9999999999999999998887755 59999999999999999999987 899999
Q ss_pred HHHHhhhchhhHHHHHhHchhccCCChhhHHHHhhcccchHhhhccHHHHHHHHHHHHhhcccccccchhhcCCCHHHHH
Q 015106 78 LMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIE 157 (413)
Q Consensus 78 L~aA~~lqv~~L~~~C~~~L~~~~l~~~n~l~i~~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~~efl~L~~~~l~ 157 (413)
|.+|.++|++++.+.|.+.+.+ .|++.|++.+++.++ .|+...+.+.|.+++..|+..+.. ..-+.+++.+.+.
T Consensus 147 lAaA~~lqldgl~qrC~evMie-~lspkta~~yYea~c----kYgle~vk~kc~ewl~~nl~~i~~-~q~l~ei~~~Lm~ 220 (488)
T KOG4682|consen 147 LAAACLLQLDGLIQRCGEVMIE-TLSPKTACGYYEAAC----KYGLESVKKKCLEWLLNNLMTIQN-VQLLKEISINLMK 220 (488)
T ss_pred HHHHHHHHHhhHHHHHHHHHHH-hcChhhhhHhhhhhh----hhhhHHHHHHHHHHHHHhhHhhhh-HHHHHhcCHHHHH
Confidence 9999999999999999999999 899999999999886 569999999999999999999988 6677799999999
Q ss_pred HhhcCCCCCCCC-hHHHHHHHHHHHH
Q 015106 158 AVLASDDLQIAS-EDAVYDFALKWAR 182 (413)
Q Consensus 158 ~lL~sd~L~v~s-E~~v~~av~~Wi~ 182 (413)
+++.|++|-|-+ |.++|..+..|+-
T Consensus 221 ~ll~SpnLfvmq~EfdLyttlk~Wmf 246 (488)
T KOG4682|consen 221 QLLGSPNLFVMQVEFDLYTTLKKWMF 246 (488)
T ss_pred HHhCCCCeEEEEeeehHHHHHHHHHH
Confidence 999999998877 9999999999974
No 8
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=99.74 E-value=1.4e-18 Score=140.93 Aligned_cols=103 Identities=32% Similarity=0.605 Sum_probs=92.0
Q ss_pred HHHHhhcccchHhhhccHHHHHHHHHHHHhhcccccccchhhcCCCHHHHHHhhcCCCCCCCChHHHHHHHHHHHHhcCC
Q 015106 107 ALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYP 186 (413)
Q Consensus 107 ~l~i~~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~~efl~L~~~~l~~lL~sd~L~v~sE~~v~~av~~Wi~~~~~ 186 (413)
|+.++.+|. .+++.+|.++|.+||..||.++.+ +++|.+||.+.+..||+++++++.+|.+||+++++|++++
T Consensus 1 C~~i~~~A~----~~~~~~L~~~~~~~i~~nf~~v~~-~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~-- 73 (103)
T PF07707_consen 1 CLSIYRLAE----KYGLEELAEACLRFIAKNFNEVSK-SDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHN-- 73 (103)
T ss_dssp HHHHHHHHH----HTT-HHHHHHHHHHHHHTHHHHTT-SHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCT--
T ss_pred ChhHHHHHH----HcChHHHHHHHHHHHHHHHHHHcc-chhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhC--
Confidence 888999886 569999999999999999999999 9999999999999999999999999999999999999998
Q ss_pred ChHHHHHHHHHHhhccccCCCCCHHHHHhhcc
Q 015106 187 KLEERREILGSRLGRLIRFPYMTCRKLKKVLT 218 (413)
Q Consensus 187 ~~~~R~~~l~~~Ll~~VRf~lls~~~L~~~~~ 218 (413)
.++|.+++ ++|+++||||+|++++|.+.++
T Consensus 74 -~~~r~~~~-~~Ll~~iR~~~l~~~~L~~~v~ 103 (103)
T PF07707_consen 74 -PENREEHL-KELLSCIRFPLLSPEELQNVVE 103 (103)
T ss_dssp -HHHHTTTH-HHHHCCCHHHCT-HHHHHHCCT
T ss_pred -HHHHHHHH-HHHHHhCCcccCCHHHHHHHHC
Confidence 77898888 8999999999999999988763
No 9
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.71 E-value=2.8e-17 Score=134.97 Aligned_cols=95 Identities=26% Similarity=0.488 Sum_probs=84.5
Q ss_pred CCcEEEEEe---EEEeehhhhcccCHHHHHhhcCC-CCCCCccEEEEecCCCCHHHHHHHHHHHccCcccCC-ChhhHHH
Q 015106 2 DLSTVLRVK---TVHISSPILAAKSPFFYKLFSNG-MRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTT-TPTALLD 76 (413)
Q Consensus 2 ~cDV~l~v~---~f~aHk~iLaa~S~yF~~mf~~~-~~Es~~~~i~L~~~~v~~~~f~~lL~fiYtg~i~i~-~~~~v~~ 76 (413)
.||++|.++ .|+|||.||+++|+||++||.++ +.+....+|.++ ++++++|+.+++|+|+|++.++ . +++.+
T Consensus 10 ~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~~ 86 (111)
T PF00651_consen 10 FSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP--DVSPEAFEAFLEYMYTGEIEINSD-ENVEE 86 (111)
T ss_dssp S--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET--TSCHHHHHHHHHHHHHSEEEEE-T-TTHHH
T ss_pred CCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc--cccccccccccccccCCcccCCHH-HHHHH
Confidence 689999995 69999999999999999999998 666666677776 9999999999999999999987 6 89999
Q ss_pred HHHHHhhhchhhHHHHHhHchhc
Q 015106 77 VLMAADKFEVASCMRYCSRLLRN 99 (413)
Q Consensus 77 LL~aA~~lqv~~L~~~C~~~L~~ 99 (413)
++.+|++|+++.|++.|.++|.+
T Consensus 87 ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 87 LLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHh
Confidence 99999999999999999999976
No 10
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.65 E-value=5e-16 Score=121.38 Aligned_cols=88 Identities=27% Similarity=0.474 Sum_probs=81.8
Q ss_pred cEEEEE--eEEEeehhhhcccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHHHHHH
Q 015106 4 STVLRV--KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAA 81 (413)
Q Consensus 4 DV~l~v--~~f~aHk~iLaa~S~yF~~mf~~~~~Es~~~~i~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~LL~aA 81 (413)
|+++.+ +.|++||.+|+++|+||++||.+++.++....+.++ +.++.+|+.+++|+|++++.++. +++.+++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~--~~~~~~f~~~l~~ly~~~~~~~~-~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLD--DVSPEDFRALLEFLYTGKLDLPE-ENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEec--CCCHHHHHHHHHeecCceeecCH-HHHHHHHHHH
Confidence 788888 469999999999999999999999988878888887 89999999999999999999987 7999999999
Q ss_pred hhhchhhHHHHHh
Q 015106 82 DKFEVASCMRYCS 94 (413)
Q Consensus 82 ~~lqv~~L~~~C~ 94 (413)
++|++++|++.|+
T Consensus 78 ~~~~~~~l~~~c~ 90 (90)
T smart00225 78 DYLQIPGLVELCE 90 (90)
T ss_pred HHHCcHHHHhhhC
Confidence 9999999999985
No 11
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=99.65 E-value=5.6e-16 Score=124.75 Aligned_cols=99 Identities=28% Similarity=0.510 Sum_probs=89.3
Q ss_pred HHHHhhcccchHhhhccHHHHHHHHHHHHhhcccccccchhhcCCCHHHHHHhhcCCCCCCCChHHHHHHHHHHHHhcCC
Q 015106 107 ALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYP 186 (413)
Q Consensus 107 ~l~i~~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~~efl~L~~~~l~~lL~sd~L~v~sE~~v~~av~~Wi~~~~~ 186 (413)
|+.++.+|+ .+++..|.+.|..||.+||..+.+ +++|.+||.+.+..+|++|+|+|.+|.++|+++++|++++
T Consensus 1 c~~i~~~a~----~~~~~~L~~~~~~~i~~nf~~~~~-~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~-- 73 (101)
T smart00875 1 CLGIRRFAE----LYGLEELLEKALRFILKNFLEVAQ-SEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHD-- 73 (101)
T ss_pred CHhHHHHHH----HhChHHHHHHHHHHHHHHHHHHhc-CcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCC--
Confidence 566777764 579999999999999999999998 8999999999999999999999989999999999999998
Q ss_pred ChHHHHHHHHHHhhccccCCCCCHHHHHh
Q 015106 187 KLEERREILGSRLGRLIRFPYMTCRKLKK 215 (413)
Q Consensus 187 ~~~~R~~~l~~~Ll~~VRf~lls~~~L~~ 215 (413)
.+.|. ++ ..++++||||+|++..|.+
T Consensus 74 -~~~~~-~~-~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 74 -PERRR-HL-PELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred -HHHHH-HH-HHHHHhCCCCCCCHHHHHh
Confidence 55554 66 8999999999999998865
No 12
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.64 E-value=8.2e-16 Score=133.64 Aligned_cols=152 Identities=16% Similarity=0.306 Sum_probs=130.3
Q ss_pred CCCcEEEEEe-----EEEeehhhhcccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHccCcccCCCh-hhH
Q 015106 1 MDLSTVLRVK-----TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTP-TAL 74 (413)
Q Consensus 1 ~~cDV~l~v~-----~f~aHk~iLaa~S~yF~~mf~~~~~Es~~~~i~L~~~~v~~~~f~~lL~fiYtg~i~i~~~-~~v 74 (413)
+++|+++.++ .++|||.|||++|+++. |.++-.|. .++..+. ++++++|...++||||.++.+... +.+
T Consensus 65 qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dek-se~~~~d--Dad~Ea~~t~iRWIYTDEidfk~dD~~L 139 (280)
T KOG4591|consen 65 QFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEK-SEELDLD--DADFEAFHTAIRWIYTDEIDFKEDDEFL 139 (280)
T ss_pred cccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcc-hhhhccc--ccCHHHHHHhheeeeccccccccchHHH
Confidence 3689999993 49999999999999875 44433332 2334444 899999999999999999997652 568
Q ss_pred HHHHHHHhhhchhhHHHHHhHchhccCCChhhHHHHhhcccchHhhhccHHHHHHHHHHHHhhcccccccchhhcCCCHH
Q 015106 75 LDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLA 154 (413)
Q Consensus 75 ~~LL~aA~~lqv~~L~~~C~~~L~~~~l~~~n~l~i~~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~~efl~L~~~ 154 (413)
.++.+.|+.||++-|++.|++-+.. -++.+||+.++++|+. -+..+|...|...|+.++.++-+ ++|.+++..
T Consensus 140 ~el~e~An~FqLe~Lke~C~k~l~a-~l~V~NCIk~Ye~AEe----~n~~qL~n~~~eiIA~~W~dL~~--a~FaqMs~a 212 (280)
T KOG4591|consen 140 LELCELANRFQLELLKERCEKGLGA-LLHVDNCIKFYEFAEE----LNARQLMNVAAEIIAGAWDDLGK--ADFAQMSAA 212 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-HhhHhhHHHHHHHHHH----hhHHHHHHHHHHHHHhhccccCh--HHHHhccHH
Confidence 8999999999999999999999999 6999999999999974 47899999999999999999864 799999999
Q ss_pred HHHHhhcCCC
Q 015106 155 GIEAVLASDD 164 (413)
Q Consensus 155 ~l~~lL~sd~ 164 (413)
.+..++.+..
T Consensus 213 LLYklId~kT 222 (280)
T KOG4591|consen 213 LLYKLIDGKT 222 (280)
T ss_pred HHHHHHcCCC
Confidence 9999998864
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.47 E-value=3.4e-14 Score=145.44 Aligned_cols=136 Identities=15% Similarity=0.249 Sum_probs=116.2
Q ss_pred CCCcEEEEEe-EEEeehhhhcccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHc-cCcccCCC----hhhH
Q 015106 1 MDLSTVLRVK-TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMY-SSTLSTTT----PTAL 74 (413)
Q Consensus 1 ~~cDV~l~v~-~f~aHk~iLaa~S~yF~~mf~~~~~Es~~~~i~L~~~~v~~~~f~~lL~fiY-tg~i~i~~----~~~v 74 (413)
+||||+++-+ .++|||++|.++++||..||..-|.|+.. |++....+..+.++.+|+|+| +.+..+-. .+.+
T Consensus 711 ~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS--~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~ 788 (1267)
T KOG0783|consen 711 MDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSS--ITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFM 788 (1267)
T ss_pred eeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhcc--ceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhh
Confidence 4677777764 49999999999999999999999999876 455433677999999999999 44444311 2678
Q ss_pred HHHHHHHhhhchhhHHHHHhHchhccCCChhhHHHHhhcccchHhhhccHHHHHHHHHHHHhhcccccc
Q 015106 75 LDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISK 143 (413)
Q Consensus 75 ~~LL~aA~~lqv~~L~~~C~~~L~~~~l~~~n~l~i~~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~ 143 (413)
.++|..||.|-+.+|+..|+.-|.+ .++..||-.++++| ..|++.+|...|.+||+.|...+..
T Consensus 789 ~~il~iaDqlli~~Lk~Ice~~ll~-kl~lk~~~~llefa----amY~ak~L~~~C~dfic~N~~~~Le 852 (1267)
T KOG0783|consen 789 FEILSIADQLLILELKSICEQSLLR-KLNLKTLPTLLEFA----AMYHAKELYSRCIDFICHNIEFFLE 852 (1267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-HhcccchHHHHHHH----HHhhHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999999999 79999999999997 4679999999999999999988765
No 14
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.34 E-value=1.1e-06 Score=92.31 Aligned_cols=107 Identities=11% Similarity=0.061 Sum_probs=71.6
Q ss_pred eEEEEe------cCCceEEEecCCCCeeEe---ccccccceeEEeeCCeEEEeeeeeCCcceeeeeee--------ccCC
Q 015106 262 ERAYKY------RPVKVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQGFFLSAHC--------NMDQ 324 (413)
Q Consensus 262 ~~l~~~------~~~~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~iY~~~f~~gg~~~~~~~~~--------~~~~ 324 (413)
+.||+. ..+++||+|||.+++|.. |+.+|.++|+++++|+||++|+.-|+.....++.| ..-+
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~ 460 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA 460 (571)
T ss_pred CEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC
Confidence 568883 347899999999999999 88899999999999999996655554444444444 3333
Q ss_pred CCCceeeeeEEeeeccCceeEEEEEEEeeeccCccccccccceeEEEe-CCeec
Q 015106 325 QSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKPTEEYVSKYKGNYTFT-GGKAV 377 (413)
Q Consensus 325 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~t-~~~~~ 377 (413)
+++..+.|+.+++.++ +.||+.---..... ..-..|..+ .+|+.
T Consensus 461 ~M~~~R~~~g~a~~~~--------~iYvvGG~~~~~~~-~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 461 PMNTRRSGFGVAVLNG--------KIYVVGGFDGTSAL-SSVERYDPETNQWTM 505 (571)
T ss_pred CcccccccceEEEECC--------EEEEECCccCCCcc-ceEEEEcCCCCceeE
Confidence 4444555566666666 88887653321111 124455555 67774
No 15
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.22 E-value=2.2e-06 Score=89.19 Aligned_cols=94 Identities=20% Similarity=0.267 Sum_probs=68.7
Q ss_pred CCcEEEEEe--EEEeehhhhcccCHHHHHhhcCCCCCCCccEEEEe----------cCCCCHHHHHHHHHHHccCcccCC
Q 015106 2 DLSTVLRVK--TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLR----------IHASEEAALMELLNFMYSSTLSTT 69 (413)
Q Consensus 2 ~cDV~l~v~--~f~aHk~iLaa~S~yF~~mf~~~~~Es~~~~i~L~----------~~~v~~~~f~~lL~fiYtg~i~i~ 69 (413)
..||||.|+ -|+|||.||+++|++||++|....+.+..+.|.+. .+++.+..|+.+|.||||...--.
T Consensus 558 ~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~~~P 637 (1267)
T KOG0783|consen 558 FHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTLLSP 637 (1267)
T ss_pred cceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccccCC
Confidence 469999995 49999999999999999999775544444444443 558999999999999999843211
Q ss_pred --C-----------hhhH-------HHHHHHHhhhchhhHHHHHhH
Q 015106 70 --T-----------PTAL-------LDVLMAADKFEVASCMRYCSR 95 (413)
Q Consensus 70 --~-----------~~~v-------~~LL~aA~~lqv~~L~~~C~~ 95 (413)
+ ++|. +.+...+.+|++.+|...-..
T Consensus 638 ~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~s 683 (1267)
T KOG0783|consen 638 WHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSVS 683 (1267)
T ss_pred ccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhhh
Confidence 0 1233 347778888888877764433
No 16
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.22 E-value=1.8e-06 Score=82.67 Aligned_cols=134 Identities=16% Similarity=0.081 Sum_probs=100.5
Q ss_pred EEEeehhhhcccCHHHHHhhcCCCCCCC--ccEEEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHHHHHHhhhchh-
Q 015106 11 TVHISSPILAAKSPFFYKLFSNGMRESE--QRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVA- 87 (413)
Q Consensus 11 ~f~aHk~iLaa~S~yF~~mf~~~~~Es~--~~~i~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~LL~aA~~lqv~- 87 (413)
.+|||++++. +.+||..||.|++.|+. +....+..++....+.+.+++|+|+.+..+.. +-+.+++-.|+++.+.
T Consensus 302 RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~-~~A~dvll~ad~lal~~ 379 (516)
T KOG0511|consen 302 RYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIF-DVASDVLLFADKLALAD 379 (516)
T ss_pred cccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchH-HHHhhHHHHhhHhhhhh
Confidence 5999999996 67999999999999964 22333334467788999999999999999987 8899999999999775
Q ss_pred --hHHHHHhHchhcc--CCChhhHHHHhhcccchHhhhccHHHHHHHHHHHHhhcccccccchhhcCC
Q 015106 88 --SCMRYCSRLLRNL--PMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNL 151 (413)
Q Consensus 88 --~L~~~C~~~L~~~--~l~~~n~l~i~~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~~efl~L 151 (413)
.|+.+..--|.++ .++.=|++.++..+ +.-....|.+.+..|++.|...+.. .+++...
T Consensus 380 dr~Lkt~as~~itq~~e~id~y~V~dIl~~~----wd~~~~rlEqfa~~~~a~hl~~l~~-dPe~~~~ 442 (516)
T KOG0511|consen 380 DRLLKTAASAEITQWLELIDMYGVLDILEYC----WDLVACRLEQFAETHEARHLLLLLP-DPEGDSS 442 (516)
T ss_pred hhhhhhhhhHHHHHHHHHHHhhhHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHHhcC-CchhhHH
Confidence 2555555555552 23333455655543 3446788999999999999998887 7777643
No 17
>PHA03098 kelch-like protein; Provisional
Probab=98.20 E-value=1.7e-05 Score=82.99 Aligned_cols=45 Identities=20% Similarity=0.095 Sum_probs=38.6
Q ss_pred eEEEEec------CCceEEEecCCCCeeEe---ccccccceeEEeeCCeEEEee
Q 015106 262 ERAYKYR------PVKVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQA 306 (413)
Q Consensus 262 ~~l~~~~------~~~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~iY~~~ 306 (413)
+.||+.+ ..+++++|||.+++|.. ||.+|.++++++++|+||+.|
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~G 396 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIG 396 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEEC
Confidence 5778732 36789999999999999 888999999999999999944
No 18
>PHA02790 Kelch-like protein; Provisional
Probab=97.88 E-value=8.8e-05 Score=76.68 Aligned_cols=45 Identities=20% Similarity=0.004 Sum_probs=39.0
Q ss_pred eEEEEecC---CceEEEecCCCCeeEe---ccccccceeEEeeCCeEEEee
Q 015106 262 ERAYKYRP---VKVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQA 306 (413)
Q Consensus 262 ~~l~~~~~---~~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~iY~~~ 306 (413)
+.||+.++ .++||+|||.+++|.. ||.+|.++++++++|+||++|
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviG 369 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIG 369 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEec
Confidence 67888443 4789999999999998 888999999999999999944
No 19
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.88 E-value=6.5e-05 Score=68.78 Aligned_cols=92 Identities=16% Similarity=0.290 Sum_probs=77.2
Q ss_pred EEEEEe--EEEeehhhhcccCHHHHHhhcCCCC--CCCccEEEEecCCCCHHHHHHHHHHHccCcccCCC-hhhHHHHHH
Q 015106 5 TVLRVK--TVHISSPILAAKSPFFYKLFSNGMR--ESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTT-PTALLDVLM 79 (413)
Q Consensus 5 V~l~v~--~f~aHk~iLaa~S~yF~~mf~~~~~--Es~~~~i~L~~~~v~~~~f~~lL~fiYtg~i~i~~-~~~v~~LL~ 79 (413)
|.|.|+ .|..++.-|.....||++|+.+++. -...+.|-| +=+|.-|+.||+||..|.+.+.+ ...+.+|+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI---DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI---DRSPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe---cCChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 446664 4999999999999999999999874 223456777 67999999999999999998755 256889999
Q ss_pred HHhhhchhhHHHHHhHchhc
Q 015106 80 AADKFEVASCMRYCSRLLRN 99 (413)
Q Consensus 80 aA~~lqv~~L~~~C~~~L~~ 99 (413)
-|.+|.++.|++.|..-|..
T Consensus 84 EA~fYlL~~Lv~~C~~~i~~ 103 (230)
T KOG2716|consen 84 EAEFYLLDGLVELCQSAIAR 103 (230)
T ss_pred HHHHhhHHHHHHHHHHHhhh
Confidence 99999999999999998777
No 20
>PHA02713 hypothetical protein; Provisional
Probab=97.86 E-value=9.7e-05 Score=77.73 Aligned_cols=45 Identities=9% Similarity=0.023 Sum_probs=39.3
Q ss_pred eEEEEecC------CceEEEecCCCCeeEe---ccccccceeEEeeCCeEEEee
Q 015106 262 ERAYKYRP------VKVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQA 306 (413)
Q Consensus 262 ~~l~~~~~------~~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~iY~~~ 306 (413)
+.||+.++ +++||+|||.+++|.. ||.+|.++++++++|+||++|
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviG 405 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIG 405 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEe
Confidence 67888332 5789999999999998 899999999999999999944
No 21
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.69 E-value=5.5e-05 Score=72.15 Aligned_cols=88 Identities=11% Similarity=0.278 Sum_probs=73.2
Q ss_pred eEEEeehhhhcccCHHHHHhhcCCCCCC-CccEEEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHHHHHHhhhchhh
Q 015106 10 KTVHISSPILAAKSPFFYKLFSNGMRES-EQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVAS 88 (413)
Q Consensus 10 ~~f~aHk~iLaa~S~yF~~mf~~~~~Es-~~~~i~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~LL~aA~~lqv~~ 88 (413)
+.|.|.+.+|...=.||+..+.....++ ..++|.|.+ .-|..+|+-+++|+......++. +||..||..|++|||++
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisV-hCDv~iF~WLm~yv~~~~p~l~~-~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISV-HCDVHIFEWLMRYVKGEPPSLTP-SNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEE-ecChhHHHHHHHHhhcCCCcCCc-CcEEEeEehhhhhccHH
Confidence 3699999999999999999996532222 224455543 56889999999999998888887 99999999999999999
Q ss_pred HHHHHhHchhc
Q 015106 89 CMRYCSRLLRN 99 (413)
Q Consensus 89 L~~~C~~~L~~ 99 (413)
|++.|..|+.+
T Consensus 92 Lve~cl~y~~~ 102 (317)
T PF11822_consen 92 LVEECLQYCHD 102 (317)
T ss_pred HHHHHHHHHHH
Confidence 99999988877
No 22
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.60 E-value=0.00012 Score=58.02 Aligned_cols=86 Identities=16% Similarity=0.269 Sum_probs=64.2
Q ss_pred EEEEEe--EEEeehhhhc-ccCHHHHHhhcCC---CCCCCccEEEEecCCCCHHHHHHHHHHHcc-CcccCCChhhHHHH
Q 015106 5 TVLRVK--TVHISSPILA-AKSPFFYKLFSNG---MRESEQRYVTLRIHASEEAALMELLNFMYS-STLSTTTPTALLDV 77 (413)
Q Consensus 5 V~l~v~--~f~aHk~iLa-a~S~yF~~mf~~~---~~Es~~~~i~L~~~~v~~~~f~~lL~fiYt-g~i~i~~~~~v~~L 77 (413)
|+|.|+ .|.+-+..|. ....+|.+|++++ .....+.++-| +-++..|+.||+|+.+ +.+.......+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi---DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI---DRDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE---SS-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe---ccChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 678884 4889888888 5567999999864 33445677777 6799999999999999 67776433678999
Q ss_pred HHHHhhhchhhH-HHHH
Q 015106 78 LMAADKFEVASC-MRYC 93 (413)
Q Consensus 78 L~aA~~lqv~~L-~~~C 93 (413)
++-|.+|+++.+ ++.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999998 7666
No 23
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.46 E-value=6.5e-05 Score=69.25 Aligned_cols=96 Identities=20% Similarity=0.316 Sum_probs=66.7
Q ss_pred EEEeehhhhcccCHHHHHhhcCCCCCC---------CccEEEEecCCCCHHHHH-HHHHHHccCcccCCC----------
Q 015106 11 TVHISSPILAAKSPFFYKLFSNGMRES---------EQRYVTLRIHASEEAALM-ELLNFMYSSTLSTTT---------- 70 (413)
Q Consensus 11 ~f~aHk~iLaa~S~yF~~mf~~~~~Es---------~~~~i~L~~~~v~~~~f~-~lL~fiYtg~i~i~~---------- 70 (413)
+++|||+|.|++|++||+++....+|. ....|.+.. -+-|.+|. .+|.+|||..++++-
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE-~I~PkafA~i~lhclYTD~lDlSl~hkce~SigS 340 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDE-LIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGS 340 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechh-hhcchhhhhhhhhhheecccchhhcccCCccccc
Confidence 389999999999999999986544332 234566642 24455555 579999998775431
Q ss_pred -----------------hhhHHHHHHHHhhhchhhHHHHHhHchhccCCChhhHH
Q 015106 71 -----------------PTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESAL 108 (413)
Q Consensus 71 -----------------~~~v~~LL~aA~~lqv~~L~~~C~~~L~~~~l~~~n~l 108 (413)
...+++|++.|-+|.+.-|.+.|.+.+.. ....++..
T Consensus 341 LSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~-acaadlsn 394 (401)
T KOG2838|consen 341 LSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRK-ACAADLSN 394 (401)
T ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhccc
Confidence 12346778888888888888888888877 56555443
No 24
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.44 E-value=0.00011 Score=67.65 Aligned_cols=83 Identities=12% Similarity=0.182 Sum_probs=57.3
Q ss_pred cEEEEEeEEEeehhhhcccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHccCcccCCC--hhhHHHHHHHH
Q 015106 4 STVLRVKTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTT--PTALLDVLMAA 81 (413)
Q Consensus 4 DV~l~v~~f~aHk~iLaa~S~yF~~mf~~~~~Es~~~~i~L~~~~v~~~~f~~lL~fiYtg~i~i~~--~~~v~~LL~aA 81 (413)
|+++.-..|+|||++||+++|+|+.+.++.-.........+...+++..+|+.+|.|+|||+.-..+ ..|+.-|-+++
T Consensus 134 diiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgmEd~~fqn~diL~QL~ 213 (401)
T KOG2838|consen 134 DIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGMEDLGFQNSDILEQLC 213 (401)
T ss_pred eeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccchhhcCCchHHHHHHHH
Confidence 4444445699999999999999999887643322223223333388999999999999999987543 13455555555
Q ss_pred hhhch
Q 015106 82 DKFEV 86 (413)
Q Consensus 82 ~~lqv 86 (413)
.-|+.
T Consensus 214 edFG~ 218 (401)
T KOG2838|consen 214 EDFGC 218 (401)
T ss_pred HhhCC
Confidence 55554
No 25
>smart00612 Kelch Kelch domain.
Probab=97.24 E-value=0.00038 Score=46.89 Aligned_cols=32 Identities=19% Similarity=0.084 Sum_probs=28.3
Q ss_pred CCceEEEecCCCCeeEe---ccccccceeEEeeCC
Q 015106 269 PVKVVEFELPRQQCVVY---LDLKREECAHLFPAG 300 (413)
Q Consensus 269 ~~~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g 300 (413)
..++|++|||.+++|.. |+.+|..+++++++|
T Consensus 13 ~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 13 RLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred eeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 36789999999999998 889999999888775
No 26
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.01 E-value=0.0003 Score=67.93 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=98.2
Q ss_pred EEEeehhhhcccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHccCcccCCChhhHH---HHHHHHhhhchh
Q 015106 11 TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALL---DVLMAADKFEVA 87 (413)
Q Consensus 11 ~f~aHk~iLaa~S~yF~~mf~~~~~Es~~~~i~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~---~LL~aA~~lqv~ 87 (413)
.+.+|+++++++|+.|++|+.....+..++.+++. +.++..++.+..|.|+..-.... +.+. .++.+|..++..
T Consensus 111 ~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~--d~~~~~~~~~~~F~~~~s~~~~~-~~~~~~~~~~a~~f~~~~~ 187 (297)
T KOG1987|consen 111 FLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLL--EEKPEVLEALNGFQVLPSQVSSV-ERIFEKHPDLAAAFKYKNR 187 (297)
T ss_pred EEEcCceEEEeeecceeeecccccchhcccccccc--ccchhhHhhhceEEEeccchHHH-HHhhcCChhhhhccccccH
Confidence 48999999999999999999988777777777776 88999999999999996544333 3443 888899999999
Q ss_pred hHHHHHhHchhccCCChhhHHHHhhcccchHhhhccHHHHHHHHHHHHh--hccccc
Q 015106 88 SCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAA--RYKDIS 142 (413)
Q Consensus 88 ~L~~~C~~~L~~~~l~~~n~l~i~~~a~~~~~~~~~~~L~~~a~~fI~~--nf~~v~ 142 (413)
.++..|...+.+ .+...+...++..++ .+....+..++..++.. +...+.
T Consensus 188 ~lk~~~~~~l~~-~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~ld~l~ 239 (297)
T KOG1987|consen 188 HLKLACMPVLLS-LIETLNVSQSLQEAS----NYDLKEAKSALTYVIAAGFKLDWLE 239 (297)
T ss_pred HHHHHHHHHHHH-HHHhhhhcccHHHhc----hhHHHHHHHHHHHHHhccchHhHHH
Confidence 999999999999 688888777777664 24566677777777776 444443
No 27
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=96.89 E-value=0.0057 Score=47.65 Aligned_cols=72 Identities=24% Similarity=0.306 Sum_probs=56.2
Q ss_pred EEEeehhhhcccCHHHHHhhcCCCC--CCCccEEEEecCCCCHHHHHHHHHHH-----ccCc-c-----cCCChhhHHHH
Q 015106 11 TVHISSPILAAKSPFFYKLFSNGMR--ESEQRYVTLRIHASEEAALMELLNFM-----YSST-L-----STTTPTALLDV 77 (413)
Q Consensus 11 ~f~aHk~iLaa~S~yF~~mf~~~~~--Es~~~~i~L~~~~v~~~~f~~lL~fi-----Ytg~-i-----~i~~~~~v~~L 77 (413)
+|-..|- .|.-|+-.|+||++... |...++|.++ +++...++.+.+|+ |++. . .|. ++.+++|
T Consensus 28 efiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~--di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ip-pemaleL 103 (112)
T KOG3473|consen 28 EFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFR--DIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIP-PEMALEL 103 (112)
T ss_pred EEEEeeh-hhhhhhHHHHHHcCCccccccccceEEec--cchHHHHHHHHHHhhheeeeccccccCCCCCCC-HHHHHHH
Confidence 4555554 45569999999998654 4556789998 99999999999998 7765 2 333 4899999
Q ss_pred HHHHhhhch
Q 015106 78 LMAADKFEV 86 (413)
Q Consensus 78 L~aA~~lqv 86 (413)
|.+|++|.+
T Consensus 104 L~aAn~Lec 112 (112)
T KOG3473|consen 104 LMAANYLEC 112 (112)
T ss_pred HHHhhhhcC
Confidence 999999863
No 28
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=96.65 E-value=0.003 Score=62.34 Aligned_cols=36 Identities=11% Similarity=-0.076 Sum_probs=32.1
Q ss_pred ceEEEecCCCCeeEe---ccc-cccceeEEeeCCeEEEee
Q 015106 271 KVVEFELPRQQCVVY---LDL-KREECAHLFPAGRIYSQA 306 (413)
Q Consensus 271 ~~ve~ydp~~~~W~~---l~~-~r~~~~~~~~~g~iY~~~ 306 (413)
++||+|||.+++|.. ||. +|.++++++++|+||+++
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~G 207 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLIN 207 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEe
Confidence 689999999999999 775 688999999999999944
No 29
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=96.48 E-value=0.0034 Score=61.89 Aligned_cols=39 Identities=10% Similarity=-0.094 Sum_probs=34.2
Q ss_pred ceEEEecCCCCeeEe---ccccccceeEEeeCCeEEEeeeeeCCcc
Q 015106 271 KVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQG 313 (413)
Q Consensus 271 ~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~iY~~~f~~gg~~ 313 (413)
.++|+|||.+++|.. ||.+|..+++++++|+||+ +||+.
T Consensus 290 ~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv----~GG~~ 331 (346)
T TIGR03547 290 WSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLL----IGGEN 331 (346)
T ss_pred eEeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEE----EeccC
Confidence 379999999999998 8889988888899999999 66643
No 30
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.31 E-value=0.013 Score=47.30 Aligned_cols=78 Identities=9% Similarity=0.178 Sum_probs=55.5
Q ss_pred EEEEE---eEEEeehhhhcccCHHHHHhhcCCCCCC-CccEEEEecCCCCHHHHHHHHHHHccCccc-------------
Q 015106 5 TVLRV---KTVHISSPILAAKSPFFYKLFSNGMRES-EQRYVTLRIHASEEAALMELLNFMYSSTLS------------- 67 (413)
Q Consensus 5 V~l~v---~~f~aHk~iLaa~S~yF~~mf~~~~~Es-~~~~i~L~~~~v~~~~f~~lL~fiYtg~i~------------- 67 (413)
|+|+. ..|.+.+.+.. .|.-++.|+.+.-.+. ....|.++ +++..+|+.+++|++--+-.
T Consensus 4 v~L~S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~--~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLP--NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCC--CcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 45555 36999998774 7999999997633222 22456665 99999999999999642111
Q ss_pred ------CCChhhHHHHHHHHhhhch
Q 015106 68 ------TTTPTALLDVLMAADKFEV 86 (413)
Q Consensus 68 ------i~~~~~v~~LL~aA~~lqv 86 (413)
++. +.+.+|+.||++|++
T Consensus 81 D~~F~~~d~-~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQ-ETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCH-HHHHHHHHHHHhhCC
Confidence 332 578899999999875
No 31
>PLN02153 epithiospecifier protein
Probab=96.03 E-value=0.011 Score=58.14 Aligned_cols=45 Identities=9% Similarity=-0.004 Sum_probs=37.3
Q ss_pred eEEEEec------CCceEEEecCCCCeeEe---c-----cccccceeEEeeCCeEEEee
Q 015106 262 ERAYKYR------PVKVVEFELPRQQCVVY---L-----DLKREECAHLFPAGRIYSQA 306 (413)
Q Consensus 262 ~~l~~~~------~~~~ve~ydp~~~~W~~---l-----~~~r~~~~~~~~~g~iY~~~ 306 (413)
+.||+.+ ..+.+++|||.+++|.. | |.+|..+++++.+++||+.+
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~G 144 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFG 144 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEEC
Confidence 5778732 35789999999999997 4 67899999999999999944
No 32
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=96.02 E-value=0.011 Score=59.15 Aligned_cols=37 Identities=11% Similarity=-0.059 Sum_probs=32.3
Q ss_pred ceEEEecCCCCeeEe---ccc-cccceeEEeeCCeEEEeee
Q 015106 271 KVVEFELPRQQCVVY---LDL-KREECAHLFPAGRIYSQAF 307 (413)
Q Consensus 271 ~~ve~ydp~~~~W~~---l~~-~r~~~~~~~~~g~iY~~~f 307 (413)
+.|++|||.+++|.. ||. +|.++++++++++||+++.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG 229 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLING 229 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEee
Confidence 679999999999998 775 6888899999999999554
No 33
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=95.99 E-value=0.013 Score=57.32 Aligned_cols=45 Identities=11% Similarity=-0.064 Sum_probs=36.8
Q ss_pred eEEEEec------CCceEEEecCCCCeeEe---cc-ccccceeEEeeCCeEEEee
Q 015106 262 ERAYKYR------PVKVVEFELPRQQCVVY---LD-LKREECAHLFPAGRIYSQA 306 (413)
Q Consensus 262 ~~l~~~~------~~~~ve~ydp~~~~W~~---l~-~~r~~~~~~~~~g~iY~~~ 306 (413)
+.||+.+ ..+.+++|||.+++|.. || .+|..+++++++|+||+.+
T Consensus 124 ~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~G 178 (323)
T TIGR03548 124 GTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFG 178 (323)
T ss_pred CEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEc
Confidence 5788832 36789999999999998 55 3688888899999999943
No 34
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=95.87 E-value=0.0094 Score=59.65 Aligned_cols=37 Identities=11% Similarity=-0.100 Sum_probs=33.2
Q ss_pred eEEEecCCCCeeEe---ccccccceeEEeeCCeEEEeeeeeCCc
Q 015106 272 VVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQ 312 (413)
Q Consensus 272 ~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~iY~~~f~~gg~ 312 (413)
++|+|||.+++|.. ||.+|..+++++++|+||+ +||.
T Consensus 313 ~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv----~GG~ 352 (376)
T PRK14131 313 SDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLL----IGGE 352 (376)
T ss_pred ehheEEecCCcccccCcCCCCccceEEEEeCCEEEE----EcCC
Confidence 58999999999987 8999999999999999999 5663
No 35
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=95.84 E-value=0.054 Score=46.03 Aligned_cols=112 Identities=20% Similarity=0.304 Sum_probs=63.9
Q ss_pred CCeEEEeeeeeCCc---ceeeeeee-ccCCCCCceeeeeEEeeeccCceeEEEEEEEeeeccCccccc-cccceeEEEeC
Q 015106 299 AGRIYSQAFHLGGQ---GFFLSAHC-NMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKPTEEYV-SKYKGNYTFTG 373 (413)
Q Consensus 299 ~g~iY~~~f~~gg~---~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~~~~~~t~ 373 (413)
+..+++..|.+||+ ...+...- -.++ .....-.++|.+......++.+.+.|.+-+.-.++-. ......+.|.+
T Consensus 22 ~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~-~~~~~iSlyL~l~~~~~~~v~a~f~~~l~n~~~~~~~~~~~~~~~~f~~ 100 (139)
T cd03774 22 GEVIKSSTFSSGANDKLKWCLRVNPKGLDE-ESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQ 100 (139)
T ss_pred CCEEECCCeecCCcCCceEEEEEeCCCCCC-CCCCeEEEEEEEccCCCCcEEEEEEEEEEecCCCeeeeecccCcEeCCC
Confidence 55788889999995 33333221 1111 1123456777664422335777787777665432211 11112355554
Q ss_pred CeeccccccCCCCCceeeecCCceeecceeeeeeeeeeeC
Q 015106 374 GKAVGYRNLFGIPWTAFMADDSIYFINGNLHLRAELTIRQ 413 (413)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (413)
+..+||.++ ++.+.+....+.|.+|+-|++++++||+.
T Consensus 101 ~~~wG~~~f--i~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 101 GKDWGFKKF--IRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred CCccCHHHe--eeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 444566554 45555544556788999999999999963
No 36
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=95.69 E-value=0.015 Score=54.05 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=42.0
Q ss_pred cceEEEEe-------cCCceEEEecCCCCeeEe------ccccccceeEEeeCCeEEEeeeeeCCcc
Q 015106 260 FVERAYKY-------RPVKVVEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQG 313 (413)
Q Consensus 260 ~~~~l~~~-------~~~~~ve~ydp~~~~W~~------l~~~r~~~~~~~~~g~iY~~~f~~gg~~ 313 (413)
+.+++|+. +..+...+|||.++.|.. +|..|.+++++++++.+|+ +||++
T Consensus 87 y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~Myi----FGGye 149 (392)
T KOG4693|consen 87 YQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYI----FGGYE 149 (392)
T ss_pred EcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEE----ecChH
Confidence 34677873 335678999999999997 8999999999999999999 88844
No 37
>PLN02153 epithiospecifier protein
Probab=95.42 E-value=0.028 Score=55.41 Aligned_cols=39 Identities=23% Similarity=0.178 Sum_probs=33.9
Q ss_pred CceEEEecCCCCeeEe------ccccccceeEEeeCCeEEEeeeeeCCc
Q 015106 270 VKVVEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQ 312 (413)
Q Consensus 270 ~~~ve~ydp~~~~W~~------l~~~r~~~~~~~~~g~iY~~~f~~gg~ 312 (413)
...+++|||.+++|.. +|.+|..+++++++++||+ +||+
T Consensus 216 ~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv----~GG~ 260 (341)
T PLN02153 216 SNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIII----FGGE 260 (341)
T ss_pred cCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEE----ECcc
Confidence 4679999999999998 4678999999999999999 6664
No 38
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=95.41 E-value=0.16 Score=42.95 Aligned_cols=111 Identities=12% Similarity=0.140 Sum_probs=68.7
Q ss_pred CCeEEEeeeeeCCcceeeeeeeccCCC--CCceeeeeEEeeeccC---ceeEEEEEEEeeeccCc-cccccccceeEEEe
Q 015106 299 AGRIYSQAFHLGGQGFFLSAHCNMDQQ--SSFHCFGLFLGMQEKG---SVSFAVDYEFAARIKPT-EEYVSKYKGNYTFT 372 (413)
Q Consensus 299 ~g~iY~~~f~~gg~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~t 372 (413)
+..+++..|.+||....+.....=... +.....+++|...... .-++.+.++|-.-+.-. +....+. ..+.|+
T Consensus 16 ~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~~~~w~i~a~~~~~l~~~~~~~~~~~~~-~~~~f~ 94 (137)
T cd03772 16 SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSCHAQAVLRIINYKDDEPSFSRR-ISHLFF 94 (137)
T ss_pred CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCCCCCCeEEEEEEEEEEcCCCCcccEEEe-eeeEEc
Confidence 567888889999977655443322110 1124566777663321 12466666665544431 2222222 224565
Q ss_pred -CCeeccccccCCCCCceeeecCCceeecceeeeeeeeeee
Q 015106 373 -GGKAVGYRNLFGIPWTAFMADDSIYFINGNLHLRAELTIR 412 (413)
Q Consensus 373 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
.+..+|+.++ ++|..+.+.++.|-+|+.+++++++||.
T Consensus 95 ~~~~~~G~~~f--i~~~~L~~~~sgyl~~D~l~Ie~~V~~~ 133 (137)
T cd03772 95 SKENDWGFSNF--MTWSEVTDPEKGFIEDDTITLEVYVQAD 133 (137)
T ss_pred CCCCCccchhe--eEHHHhcCCCCCcEECCEEEEEEEEEee
Confidence 3334577777 7899998888999999999999999985
No 39
>PF13964 Kelch_6: Kelch motif
Probab=95.41 E-value=0.018 Score=39.59 Aligned_cols=30 Identities=17% Similarity=0.108 Sum_probs=23.6
Q ss_pred ceEEEEe-------cCCceEEEecCCCCeeEe---ccccc
Q 015106 261 VERAYKY-------RPVKVVEFELPRQQCVVY---LDLKR 290 (413)
Q Consensus 261 ~~~l~~~-------~~~~~ve~ydp~~~~W~~---l~~~r 290 (413)
.+.||+. ...+.|++|||.+++|.. ||.+|
T Consensus 11 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 11 GGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 3678882 236889999999999999 66665
No 40
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=95.26 E-value=0.048 Score=49.34 Aligned_cols=69 Identities=17% Similarity=0.238 Sum_probs=54.0
Q ss_pred HHHHHhhcCCC---CCCCccEEEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHHHHHHhhhchhhHHHHHhH
Q 015106 24 PFFYKLFSNGM---RESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSR 95 (413)
Q Consensus 24 ~yF~~mf~~~~---~Es~~~~i~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~LL~aA~~lqv~~L~~~C~~ 95 (413)
....+||++.- .|+.+.-+-| +-++.-|+-||+|+..|++.....-++.++|+.|++||+-+|++..++
T Consensus 34 SMLa~MF~~~g~~~~~d~kGa~lI---DRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 34 SMLAAMFSGRGAMCQEDKKGAVLI---DRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHHHHccCCCccccccCceEEE---ccCchhhHHHHHHHhcCceeecCCccHHHHHHHhhHHhhHhHHhHHhh
Confidence 46778998732 2344455555 678999999999999999875443579999999999999999987665
No 41
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=95.18 E-value=0.068 Score=43.47 Aligned_cols=98 Identities=16% Similarity=0.308 Sum_probs=66.5
Q ss_pred eeeeeCCcceeeeeeeccCCCCCceeeeeEEeeecc-----CceeEEEEEEEeeeccCccccccccceeEEEeCCeeccc
Q 015106 305 QAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEK-----GSVSFAVDYEFAARIKPTEEYVSKYKGNYTFTGGKAVGY 379 (413)
Q Consensus 305 ~~f~~gg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~t~~~~~~~ 379 (413)
..+..||....+.+..+-+ ....+++|..... +.-++.+++.+-+-+.-..+ ..+...+++|++...+|+
T Consensus 17 ~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~F~~~~~~g~ 91 (119)
T PF00917_consen 17 FVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKS-ISKRIKSHSFNNPSSWGW 91 (119)
T ss_dssp EESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCE-EEEEEECEEECTTSEEEE
T ss_pred CeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCc-ceeeeeeeEEeeecccch
Confidence 4677788776665544333 2356677766553 24557777777777655444 344444789998777777
Q ss_pred cccCCCCCceeeecCCceeecceeeeeeeeee
Q 015106 380 RNLFGIPWTAFMADDSIYFINGNLHLRAELTI 411 (413)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (413)
..+ ++|..+.... |.+||.+++.++.+|
T Consensus 92 ~~f--i~~~~l~~~~--fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 92 SSF--ISWEDLEDPY--FLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEE--EEHHHHTTCT--TSBTTEEEEEEEEEE
T ss_pred hhe--eEHHHhCccC--CeECCEEEEEEEEEC
Confidence 664 7788777666 899999999999987
No 42
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=95.17 E-value=0.023 Score=55.49 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=32.8
Q ss_pred ceEEEecCCCCeeEe---cc-ccccceeEEeeCCeEEEeeeeeCC
Q 015106 271 KVVEFELPRQQCVVY---LD-LKREECAHLFPAGRIYSQAFHLGG 311 (413)
Q Consensus 271 ~~ve~ydp~~~~W~~---l~-~~r~~~~~~~~~g~iY~~~f~~gg 311 (413)
++|++|||.+++|.. +| .+|..+++++++|+||+ +||
T Consensus 271 ~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv----~GG 311 (323)
T TIGR03548 271 RKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFS----ING 311 (323)
T ss_pred ceEEEEECCCCeeeEcccccccccCchheEEECCEEEE----Eec
Confidence 579999999999998 55 57899999999999999 666
No 43
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=94.95 E-value=0.097 Score=51.85 Aligned_cols=83 Identities=17% Similarity=0.233 Sum_probs=63.4
Q ss_pred EEEEEe--EEEeehhhhcccC--HHHHHhhcCCCCCCCccE--EEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHHH
Q 015106 5 TVLRVK--TVHISSPILAAKS--PFFYKLFSNGMRESEQRY--VTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVL 78 (413)
Q Consensus 5 V~l~v~--~f~aHk~iLaa~S--~yF~~mf~~~~~Es~~~~--i~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~LL 78 (413)
|.|.|+ .|.-.+.-|+... .+|-+++++.+.-.+... |-| +=+|+.|..||+|+.||++.+.. -....+|
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI---DRDPdlFaviLn~LRTg~L~~~g-~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI---DRDPDLFAVILNLLRTGDLDASG-VFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe---cCCchHHHHHHHHHhcCCCCCcc-Cchhhhh
Confidence 446773 4888888887655 599999998776544433 555 67999999999999999999865 3444444
Q ss_pred H-HHhhhchhhHHH
Q 015106 79 M-AADKFEVASCMR 91 (413)
Q Consensus 79 ~-aA~~lqv~~L~~ 91 (413)
. -|.||++.+++.
T Consensus 89 hdEA~fYGl~~llr 102 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLR 102 (465)
T ss_pred hhhhhhcCcHHHHH
Confidence 4 899999999886
No 44
>PLN02193 nitrile-specifier protein
Probab=94.82 E-value=0.053 Score=55.98 Aligned_cols=44 Identities=7% Similarity=-0.099 Sum_probs=37.1
Q ss_pred eEEEEec------CCceEEEecCCCCeeEe---c---cccccceeEEeeCCeEEEe
Q 015106 262 ERAYKYR------PVKVVEFELPRQQCVVY---L---DLKREECAHLFPAGRIYSQ 305 (413)
Q Consensus 262 ~~l~~~~------~~~~ve~ydp~~~~W~~---l---~~~r~~~~~~~~~g~iY~~ 305 (413)
+.||+.+ .++.+++|||.+++|.. | |.+|..+++++.+++||+.
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~ 284 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVF 284 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEE
Confidence 5788732 35789999999999998 4 6789999999999999993
No 45
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.06 Score=46.96 Aligned_cols=97 Identities=11% Similarity=0.196 Sum_probs=68.3
Q ss_pred EEEeehhhhcccCHHHHHhhcC-CCCCCCccEEEEecCCCCHHHHHHHHHHHccCcc-----------------------
Q 015106 11 TVHISSPILAAKSPFFYKLFSN-GMRESEQRYVTLRIHASEEAALMELLNFMYSSTL----------------------- 66 (413)
Q Consensus 11 ~f~aHk~iLaa~S~yF~~mf~~-~~~Es~~~~i~L~~~~v~~~~f~~lL~fiYtg~i----------------------- 66 (413)
.|.+-..+.. .|.-..+++.. +..... ..|.|+ +|+..+|..+|+|++.-+-
T Consensus 16 ~f~ve~~~a~-~s~~i~~~~~~~~~~~~~-~~IPl~--nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 16 IFEVEEEVAR-QSQTISAHMIEDGCADEN-DPIPLP--NVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred eeehhHHHHH-HhHHHHHHHHHcCCCccC-CccccC--ccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 4777777664 58888888765 222221 356665 8999999999999987331
Q ss_pred --cCCChhhHHHHHHHHhhhchhhHHHHHhHchhcc--CCChhhHHHHhh
Q 015106 67 --STTTPTALLDVLMAADKFEVASCMRYCSRLLRNL--PMTCESALLYLD 112 (413)
Q Consensus 67 --~i~~~~~v~~LL~aA~~lqv~~L~~~C~~~L~~~--~l~~~n~l~i~~ 112 (413)
.+.. +++.+|+.||++|+++.|.++|++.+..+ ..+++..-..+.
T Consensus 92 Flk~d~-~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~ 140 (162)
T KOG1724|consen 92 FLKVDQ-GTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFN 140 (162)
T ss_pred HHhcCH-HHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcC
Confidence 1122 47899999999999999999999987763 234554444443
No 46
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=94.53 E-value=0.2 Score=40.75 Aligned_cols=108 Identities=19% Similarity=0.334 Sum_probs=69.7
Q ss_pred eCCeEEEeeeeeCCcceeeeeeeccCCCCCceeeeeEEeeeccC----ceeEEEEEEEeeeccCccccccccceeEEE-e
Q 015106 298 PAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKG----SVSFAVDYEFAARIKPTEEYVSKYKGNYTF-T 372 (413)
Q Consensus 298 ~~g~iY~~~f~~gg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-t 372 (413)
.++.+|+..|..+|....+....+-... .....+++|...+.. .-++.+++.|.+.+.-.++-..+......+ .
T Consensus 14 ~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 92 (126)
T cd00121 14 EGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGKSLSKSFTHVFFSE 92 (126)
T ss_pred CCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCccceEeccCCcCCC
Confidence 4677888888899877767765544332 245788888775543 246888888888776533333333333322 2
Q ss_pred CCeeccccccCCCCCceeeecCCceeecceeeeeeeee
Q 015106 373 GGKAVGYRNLFGIPWTAFMADDSIYFINGNLHLRAELT 410 (413)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (413)
.+.+.|+.++ ++|..+..+.. .+||.|.++++++
T Consensus 93 ~~~~~G~~~f--i~~~~l~~~~~--~~~d~l~i~~~v~ 126 (126)
T cd00121 93 KGSGWGFPKF--ISWDDLEDSYY--LVDDSLTIEVEVK 126 (126)
T ss_pred CCCCCChHHe--eEHHHhccCCc--EECCEEEEEEEEC
Confidence 3445677655 77777765433 7999999999863
No 47
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=93.99 E-value=0.34 Score=50.16 Aligned_cols=52 Identities=8% Similarity=-0.054 Sum_probs=41.6
Q ss_pred CCceEEEecCCCCeeEe------ccccccceeEEeeCCeEEEeeeeeCCcceeeeeee
Q 015106 269 PVKVVEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQGFFLSAHC 320 (413)
Q Consensus 269 ~~~~ve~ydp~~~~W~~------l~~~r~~~~~~~~~g~iY~~~f~~gg~~~~~~~~~ 320 (413)
.+..+..||+.+++|.. -|.+|.+|++++.++++++++.+.+|..|+..+++
T Consensus 188 ~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ 245 (482)
T KOG0379|consen 188 SLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHI 245 (482)
T ss_pred ceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEe
Confidence 36789999999999998 67889999999999999997655544445444444
No 48
>PLN02193 nitrile-specifier protein
Probab=93.82 E-value=0.1 Score=53.89 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=38.0
Q ss_pred eEEEEec-----CCceEEEecCCCCeeEec------cccccceeEEeeCCeEEEeeeeeCCc
Q 015106 262 ERAYKYR-----PVKVVEFELPRQQCVVYL------DLKREECAHLFPAGRIYSQAFHLGGQ 312 (413)
Q Consensus 262 ~~l~~~~-----~~~~ve~ydp~~~~W~~l------~~~r~~~~~~~~~g~iY~~~f~~gg~ 312 (413)
+.+|+.+ ....+++|||.+++|..+ |.+|..+++++++++||+ +||+
T Consensus 329 gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv----~GG~ 386 (470)
T PLN02193 329 GKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVI----FGGE 386 (470)
T ss_pred CcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEE----ECCc
Confidence 4566622 257899999999999983 678999999999999999 6664
No 49
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=93.73 E-value=0.11 Score=35.54 Aligned_cols=29 Identities=10% Similarity=-0.188 Sum_probs=25.6
Q ss_pred CceEEEecCCCCeeEe---ccccccceeEEee
Q 015106 270 VKVVEFELPRQQCVVY---LDLKREECAHLFP 298 (413)
Q Consensus 270 ~~~ve~ydp~~~~W~~---l~~~r~~~~~~~~ 298 (413)
.+.+..||+.+++|.. +|.+|..|+++++
T Consensus 18 ~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred ecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 5689999999999999 8899999988753
No 50
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=93.06 E-value=0.6 Score=48.36 Aligned_cols=35 Identities=3% Similarity=-0.140 Sum_probs=32.5
Q ss_pred CceEEEecCCCCeeEe------ccccccceeEEeeCCeEEE
Q 015106 270 VKVVEFELPRQQCVVY------LDLKREECAHLFPAGRIYS 304 (413)
Q Consensus 270 ~~~ve~ydp~~~~W~~------l~~~r~~~~~~~~~g~iY~ 304 (413)
...+.+||+.+++|.. .|.+|.+|++++.+.+||+
T Consensus 138 ~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~v 178 (482)
T KOG0379|consen 138 LNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVV 178 (482)
T ss_pred hhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEE
Confidence 3589999999999998 6889999999999999999
No 51
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=92.99 E-value=0.55 Score=33.93 Aligned_cols=53 Identities=13% Similarity=0.133 Sum_probs=39.5
Q ss_pred EEEEE---eEEEeehhhhcccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHc
Q 015106 5 TVLRV---KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMY 62 (413)
Q Consensus 5 V~l~v---~~f~aHk~iLaa~S~yF~~mf~~~~~Es~~~~i~L~~~~v~~~~f~~lL~fiY 62 (413)
|+|+. ..|.+.+.+.. .|..++.|+.+.-.+.. .|.|+ +++.+.|+.+++|++
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~--~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLP--NVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEET--TS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccC--ccCHHHHHHHHHHHH
Confidence 44555 36999988876 69999999986333222 56666 999999999999986
No 52
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=92.78 E-value=0.95 Score=38.08 Aligned_cols=106 Identities=15% Similarity=0.231 Sum_probs=63.4
Q ss_pred CCeEEEeeeeeCCcceeeeeeeccCCCCCceeeeeEEeeeccCc--------eeEEEEEEEeeeccCccc-cccccceeE
Q 015106 299 AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGS--------VSFAVDYEFAARIKPTEE-YVSKYKGNY 369 (413)
Q Consensus 299 ~g~iY~~~f~~gg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-f~~~~~~~~ 369 (413)
++.+++..|.+||+...+....+=+.. .-...++|.+....+ -++.+.+.|.+-+.-... -..+ ...+
T Consensus 14 ~~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~~~~~~~~~-~~~~ 90 (134)
T cd03775 14 EKKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPGDPSIQLSN-VAHH 90 (134)
T ss_pred CcceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCCCCccceEc-ccee
Confidence 577899999999988766554432221 235677777643221 136677777666542111 1112 3467
Q ss_pred EEe-CCeeccccccCCCCCceee----ecCCceeecceeeeeeee
Q 015106 370 TFT-GGKAVGYRNLFGIPWTAFM----ADDSIYFINGNLHLRAEL 409 (413)
Q Consensus 370 ~~t-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 409 (413)
.|. .+..+||..+ ++.+.+- ..++.|-+|+.|++.+++
T Consensus 91 ~F~~~~~~wG~~~f--i~~~~L~~~~~~~~~g~l~nD~l~I~~~~ 133 (134)
T cd03775 91 RFNAEDKDWGFTRF--IELRKLAHRTPDKPSPFLENGELNITVYV 133 (134)
T ss_pred EeCCCCCCCChhHc--ccHHHHcccccCCCCceeECCEEEEEEEE
Confidence 777 3445677665 4455444 235778999989888775
No 53
>PF13854 Kelch_5: Kelch motif
Probab=92.45 E-value=0.15 Score=33.69 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=20.6
Q ss_pred ccccccceeEEeeCCeEEEeeeeeCCcc
Q 015106 286 LDLKREECAHLFPAGRIYSQAFHLGGQG 313 (413)
Q Consensus 286 l~~~r~~~~~~~~~g~iY~~~f~~gg~~ 313 (413)
+|.+|.+|++++.+++||+ .||+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi----~GG~~ 24 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYI----FGGYS 24 (42)
T ss_pred CCCCccceEEEEECCEEEE----EcCcc
Confidence 5889999999999999999 66644
No 54
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=92.24 E-value=0.31 Score=32.62 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=17.1
Q ss_pred cccceeEEeeCCeEEEeeeeeC
Q 015106 289 KREECAHLFPAGRIYSQAFHLG 310 (413)
Q Consensus 289 ~r~~~~~~~~~g~iY~~~f~~g 310 (413)
+|.++++++++++||++|..-+
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~ 22 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDG 22 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBES
T ss_pred CCccCEEEEECCEEEEEeeecc
Confidence 5889999999999999553333
No 55
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=92.22 E-value=0.7 Score=38.60 Aligned_cols=105 Identities=17% Similarity=0.272 Sum_probs=61.4
Q ss_pred CCeEEEeeeeeCCcceeeeeeeccCCCCCceeeeeEEeeeccCceeEEEEEEEeeec--cCccccccccceeEEEeCCee
Q 015106 299 AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARI--KPTEEYVSKYKGNYTFTGGKA 376 (413)
Q Consensus 299 ~g~iY~~~f~~gg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~~~t~~~~ 376 (413)
+..+++..|.+||+...+....+=.........+++|.+......++..++.+..-+ .++. ... ....+.|+++.+
T Consensus 21 ~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~~~~~~~~~~~l~llnq~~~~~-~~~-~~~~~~f~~~~~ 98 (132)
T cd03773 21 ADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSGLGEASKYEYRVEMVHQANPTK-NIK-REFASDFEVGEC 98 (132)
T ss_pred CcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecCCCCceeEEEEEEEEcCCCCcc-ceE-EeccccccCCCC
Confidence 567899999999988777665533322223457788876553334566666664444 3332 222 222345555445
Q ss_pred ccccccCCCCCceeeecCCceeec--ceeeeeeee
Q 015106 377 VGYRNLFGIPWTAFMADDSIYFIN--GNLHLRAEL 409 (413)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 409 (413)
+|+.++ ++...+. ++.|-.| +.|++|.++
T Consensus 99 wG~~~F--i~~~~L~--~~gfl~~~~D~l~i~~~v 129 (132)
T cd03773 99 WGYNRF--FRLDLLI--NEGYLLPENDTLILRFSV 129 (132)
T ss_pred cCHHHh--ccHHHHh--hCCCcCCCCCEEEEEEEE
Confidence 676665 4444442 3557777 888888765
No 56
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=92.02 E-value=0.15 Score=34.16 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=20.6
Q ss_pred eEEEE-------ecCCceEEEecCCCCeeEecc
Q 015106 262 ERAYK-------YRPVKVVEFELPRQQCVVYLD 287 (413)
Q Consensus 262 ~~l~~-------~~~~~~ve~ydp~~~~W~~l~ 287 (413)
+.||+ ...+++|++|||.+++|..++
T Consensus 12 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 12 NKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp TEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 56777 234689999999999999843
No 57
>PF13964 Kelch_6: Kelch motif
Probab=91.23 E-value=0.31 Score=33.32 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=18.0
Q ss_pred cccceeEEeeCCeEEEeeeeeCCcc
Q 015106 289 KREECAHLFPAGRIYSQAFHLGGQG 313 (413)
Q Consensus 289 ~r~~~~~~~~~g~iY~~~f~~gg~~ 313 (413)
+|.++++++++|+||+ +||+.
T Consensus 1 pR~~~s~v~~~~~iyv----~GG~~ 21 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYV----FGGYD 21 (50)
T ss_pred CCccCEEEEECCEEEE----ECCCC
Confidence 5889999999999999 77754
No 58
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=91.23 E-value=0.34 Score=36.85 Aligned_cols=43 Identities=21% Similarity=0.446 Sum_probs=31.9
Q ss_pred hhHHHHHHHHhhhchhhHHHHHhHchhcc--CCChhhHHHHhhcc
Q 015106 72 TALLDVLMAADKFEVASCMRYCSRLLRNL--PMTCESALLYLDLP 114 (413)
Q Consensus 72 ~~v~~LL~aA~~lqv~~L~~~C~~~L~~~--~l~~~n~l~i~~~a 114 (413)
+.+.+|+.||++|+|+.|.+.|++.+... ..+++..-.++.+.
T Consensus 14 ~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~ 58 (78)
T PF01466_consen 14 DELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIE 58 (78)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT--
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCC
Confidence 78999999999999999999999998772 44555555555544
No 59
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=87.74 E-value=0.57 Score=31.87 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=17.3
Q ss_pred cccceeEEeeCCeEEEeeeeeCCc
Q 015106 289 KREECAHLFPAGRIYSQAFHLGGQ 312 (413)
Q Consensus 289 ~r~~~~~~~~~g~iY~~~f~~gg~ 312 (413)
+|..+++++++++||+ +||+
T Consensus 1 ~r~~hs~~~~~~kiyv----~GG~ 20 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYV----FGGY 20 (49)
T ss_pred CccceEEEEECCEEEE----ECCc
Confidence 5888999999999999 6665
No 60
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=87.42 E-value=1.5 Score=38.09 Aligned_cols=92 Identities=13% Similarity=0.130 Sum_probs=66.6
Q ss_pred EEEEEeE--EEeehhhhcccCHHHHHhhcCCCCCC----CccEEEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHHH
Q 015106 5 TVLRVKT--VHISSPILAAKSPFFYKLFSNGMRES----EQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVL 78 (413)
Q Consensus 5 V~l~v~~--f~aHk~iLaa~S~yF~~mf~~~~~Es----~~~~i~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~LL 78 (413)
|.+.|++ |..-|.-|.--+.-|-.-|-+.-.+. ...--.+- +-+|.-|--+|+|+..|++.++. -.-..+|
T Consensus 23 VRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlI--DRDP~~FgpvLNylRhgklvl~~-l~eeGvL 99 (210)
T KOG2715|consen 23 VRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLI--DRDPFYFGPVLNYLRHGKLVLNK-LSEEGVL 99 (210)
T ss_pred EEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEe--ccCcchHHHHHHHHhcchhhhhh-hhhhccc
Confidence 4566642 77778888887755655554422221 12223333 67899999999999999999887 5567899
Q ss_pred HHHhhhchhhHHHHHhHchhc
Q 015106 79 MAADKFEVASCMRYCSRLLRN 99 (413)
Q Consensus 79 ~aA~~lqv~~L~~~C~~~L~~ 99 (413)
+-|++|.+++|+++..+.|.+
T Consensus 100 ~EAefyn~~~li~likd~i~d 120 (210)
T KOG2715|consen 100 EEAEFYNDPSLIQLIKDRIQD 120 (210)
T ss_pred hhhhccCChHHHHHHHHHHHH
Confidence 999999999999887777766
No 61
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=87.41 E-value=0.22 Score=48.64 Aligned_cols=83 Identities=12% Similarity=0.020 Sum_probs=55.7
Q ss_pred cEEEEE---eEEEeehhhhcccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHHHHH
Q 015106 4 STVLRV---KTVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMA 80 (413)
Q Consensus 4 DV~l~v---~~f~aHk~iLaa~S~yF~~mf~~~~~Es~~~~i~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~LL~a 80 (413)
|+++.. +.|-|||..|+++|.+|..-+..-+ ....+|+=. .+-+.+|+.+++|+|-..-.+- ++.-.+|+.+
T Consensus 151 di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~--~v~~~~f~~flk~lyl~~na~~-~~qynallsi 225 (516)
T KOG0511|consen 151 DIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAH--RVILSAFSPFLKQLYLNTNAEW-KDQYNALLSI 225 (516)
T ss_pred chHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhh--hhhHhhhhHHHHHHHHhhhhhh-hhHHHHHHhh
Confidence 455555 2488999999999998866554322 123444322 5678999999999998732222 2455778888
Q ss_pred HhhhchhhHHH
Q 015106 81 ADKFEVASCMR 91 (413)
Q Consensus 81 A~~lqv~~L~~ 91 (413)
..+|++..+..
T Consensus 226 ~~kF~~e~l~~ 236 (516)
T KOG0511|consen 226 EVKFSKEKLSL 236 (516)
T ss_pred hhhccHHHhHH
Confidence 88887766553
No 62
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=86.91 E-value=1 Score=42.29 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=37.8
Q ss_pred eEEEEe--------cCCceEEEecCCCCeeEe------ccccccceeEEeeCCeEEEeeeeeCCcc
Q 015106 262 ERAYKY--------RPVKVVEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQG 313 (413)
Q Consensus 262 ~~l~~~--------~~~~~ve~ydp~~~~W~~------l~~~r~~~~~~~~~g~iY~~~f~~gg~~ 313 (413)
+.+|+. .......+|||++..|.- -|.+|...|+++.++++|. +||-.
T Consensus 251 g~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~L----FGGTs 312 (392)
T KOG4693|consen 251 GKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYL----FGGTS 312 (392)
T ss_pred ceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEE----ecCCC
Confidence 567762 235778999999999997 5777888888889999998 77733
No 63
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=84.74 E-value=2.2 Score=35.33 Aligned_cols=84 Identities=15% Similarity=0.268 Sum_probs=57.5
Q ss_pred EEEeehhhhcccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHccCcccCCC--------------------
Q 015106 11 TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTT-------------------- 70 (413)
Q Consensus 11 ~f~aHk~iLaa~S~yF~~mf~~~~~Es~~~~i~L~~~~v~~~~f~~lL~fiYtg~i~i~~-------------------- 70 (413)
.|.+.+.+ |-+|-..++|+.. + ....+.++.+++...+|+.+++|+-..+-..++
T Consensus 13 ~F~vd~~i-AerSiLikN~l~d-~---~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~F 87 (158)
T COG5201 13 IFRVDENI-AERSILIKNMLCD-S---TACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRFF 87 (158)
T ss_pred EEEehHHH-HHHHHHHHHHhcc-c---cccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHHH
Confidence 36665554 5567777887754 2 222233444589999999999999442211110
Q ss_pred ----hhhHHHHHHHHhhhchhhHHHHHhHchhc
Q 015106 71 ----PTALLDVLMAADKFEVASCMRYCSRLLRN 99 (413)
Q Consensus 71 ----~~~v~~LL~aA~~lqv~~L~~~C~~~L~~ 99 (413)
-+.+.++..+|+||.++.|.++||+.+.+
T Consensus 88 m~vDqemL~eI~laaNYL~ikpLLd~gCKivae 120 (158)
T COG5201 88 MEVDQEMLLEICLAANYLEIKPLLDLGCKIVAE 120 (158)
T ss_pred HHhhHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 13467888999999999999999998776
No 64
>PLN02772 guanylate kinase
Probab=83.53 E-value=2.1 Score=42.85 Aligned_cols=45 Identities=11% Similarity=-0.066 Sum_probs=37.4
Q ss_pred eEEEEec-------CCceEEEecCCCCeeEe------ccccccceeEEee-CCeEEEee
Q 015106 262 ERAYKYR-------PVKVVEFELPRQQCVVY------LDLKREECAHLFP-AGRIYSQA 306 (413)
Q Consensus 262 ~~l~~~~-------~~~~ve~ydp~~~~W~~------l~~~r~~~~~~~~-~g~iY~~~ 306 (413)
+++|+.+ ....|.+||+.+++|.. -|.+|.+|+++++ +++|+++.
T Consensus 35 dk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~ 93 (398)
T PLN02772 35 DKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIK 93 (398)
T ss_pred CEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEe
Confidence 6788832 34589999999999998 6889999998888 79999964
No 65
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=80.27 E-value=1.3 Score=43.13 Aligned_cols=130 Identities=18% Similarity=0.195 Sum_probs=97.1
Q ss_pred EEEeehhhhcccCHHHHHhhcCCCCCCCccEEEEecCCCCHHHHHHHHHHHccCcccCCC-hhhHHHHHHHHhhhchhhH
Q 015106 11 TVHISSPILAAKSPFFYKLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTT-PTALLDVLMAADKFEVASC 89 (413)
Q Consensus 11 ~f~aHk~iLaa~S~yF~~mf~~~~~Es~~~~i~L~~~~v~~~~f~~lL~fiYtg~i~i~~-~~~v~~LL~aA~~lqv~~L 89 (413)
.+++|+.+|+..|+-|..+....-..+....+.+. +++...+..+..++|.+ +...+ .....-++.+..-+.++..
T Consensus 37 ~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~~~~v~~~ 113 (319)
T KOG1778|consen 37 LIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKIL--GVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSHVYVVPQP 113 (319)
T ss_pred hhHHHHhcccccchHHHHHHhhhcchhhhhcceee--cccccccchhhhhhccc-hhhhHHHHHHHHHHhhhhhhhccCc
Confidence 48999999999999998887654222233444555 78889999999999998 33222 2345666677778889999
Q ss_pred HHHHhHchhccCCChhhHHHHhhcccchHhhhccHHHHHHHHHHHHhhcccccccchhh
Q 015106 90 MRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEV 148 (413)
Q Consensus 90 ~~~C~~~L~~~~l~~~n~l~i~~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~~ef 148 (413)
+..|...+..--++..|....+..+..+ ....|..+....|...|..... ++..
T Consensus 114 ~~d~~~~~~~~~~~~r~~flvl~~~~~~----~~~~lr~a~hss~~~~~~~H~~-t~~~ 167 (319)
T KOG1778|consen 114 KADCDPILECGLFDKRNVFLVLQLAEHC----DFSDLRRAKHSSIMLLFDLHLQ-TEKW 167 (319)
T ss_pred cccCCccccchhhhhHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHHhc-ccCc
Confidence 9999988877336788899998887643 6788888888888888887776 4433
No 66
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=79.73 E-value=25 Score=29.76 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=55.7
Q ss_pred CCeEEEeeeeeC--CcceeeeeeeccCCCCCceeeeeEEeeeccC-----ceeEEEEEEEeeeccCccccccccceeEEE
Q 015106 299 AGRIYSQAFHLG--GQGFFLSAHCNMDQQSSFHCFGLFLGMQEKG-----SVSFAVDYEFAARIKPTEEYVSKYKGNYTF 371 (413)
Q Consensus 299 ~g~iY~~~f~~g--g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 371 (413)
+..+++..|.+| |+...+...-+-+........+++|.+.... +-++.+.+.|...+.. ++-.++ ....++
T Consensus 22 ~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~~~l~d~~-~~~~~~-~~~~~~ 99 (149)
T cd00270 22 NTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKITLTLLDQS-DDSKRK-HITETF 99 (149)
T ss_pred CceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEEEEEECCC-CccccC-ceEEEE
Confidence 457889889999 7766554443322111224566777653321 1235666777766633 221111 112233
Q ss_pred eCCee-ccc------cccCCCCCceeee----cCCceeecceeeeeeee
Q 015106 372 TGGKA-VGY------RNLFGIPWTAFMA----DDSIYFINGNLHLRAEL 409 (413)
Q Consensus 372 t~~~~-~~~------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 409 (413)
+.... .-+ .+.-+.-|..||. .++.|-.|+.|++|+++
T Consensus 100 ~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v 148 (149)
T cd00270 100 MPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEV 148 (149)
T ss_pred EcCCchHhhcCCCcccCCCCcCcceEeEHHHhccCCCEeCCEEEEEEEE
Confidence 21100 000 0112334566665 45568899999999886
No 67
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=77.27 E-value=4 Score=41.75 Aligned_cols=37 Identities=8% Similarity=-0.033 Sum_probs=32.2
Q ss_pred cCCceEEEecCCCCeeEe----------ccccccceeEEeeCCeEEE
Q 015106 268 RPVKVVEFELPRQQCVVY----------LDLKREECAHLFPAGRIYS 304 (413)
Q Consensus 268 ~~~~~ve~ydp~~~~W~~----------l~~~r~~~~~~~~~g~iY~ 304 (413)
+..++.-|.|..+.+|.. .|.+|++||++.++.++|+
T Consensus 291 kCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYi 337 (830)
T KOG4152|consen 291 KCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYI 337 (830)
T ss_pred eeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEE
Confidence 346788899999999997 5678999999999999998
No 68
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=72.61 E-value=6.6 Score=39.23 Aligned_cols=39 Identities=21% Similarity=0.064 Sum_probs=33.1
Q ss_pred CceEEEecCCCCeeEe------ccccccceeEEe-eCCeEEEeeeeeCCc
Q 015106 270 VKVVEFELPRQQCVVY------LDLKREECAHLF-PAGRIYSQAFHLGGQ 312 (413)
Q Consensus 270 ~~~ve~ydp~~~~W~~------l~~~r~~~~~~~-~~g~iY~~~f~~gg~ 312 (413)
.+.|.+||..+-+|.. .|.+|++|+..+ +.|.||+ .|||
T Consensus 206 yNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~v----yGGY 251 (521)
T KOG1230|consen 206 YNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVV----YGGY 251 (521)
T ss_pred eeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEE----Ecch
Confidence 5789999999999998 578999998665 5999999 7773
No 69
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=72.16 E-value=12 Score=29.20 Aligned_cols=63 Identities=11% Similarity=0.209 Sum_probs=40.9
Q ss_pred HHHHHHHhhhchhhHHHHHhHchhcc-----------CCChhhHHHHhhcccchHhhhccHHHHHHHHHHHHhhcc
Q 015106 75 LDVLMAADKFEVASCMRYCSRLLRNL-----------PMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYK 139 (413)
Q Consensus 75 ~~LL~aA~~lqv~~L~~~C~~~L~~~-----------~l~~~n~l~i~~~a~~~~~~~~~~~L~~~a~~fI~~nf~ 139 (413)
.+++..|..++++.|.+.|.+|+... .++.+....++..-+. ....-.++.+++..|+..+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l--~v~~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDL--NVSSEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS----ECTCCCHHHHHHHHHHCTHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhcccc--ccccHHHHHHHHHHHHHhCHH
Confidence 46889999999999999999999871 3344444444442210 012235688888888877754
No 70
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=69.90 E-value=17 Score=33.42 Aligned_cols=86 Identities=10% Similarity=0.177 Sum_probs=56.9
Q ss_pred EEE-eEEEeehh--hhcccCHHHHHhhcCCCCC--CCccEEEEecCCCCHHHHHHHHHHHccCcccCCC-hhhHHHHHHH
Q 015106 7 LRV-KTVHISSP--ILAAKSPFFYKLFSNGMRE--SEQRYVTLRIHASEEAALMELLNFMYSSTLSTTT-PTALLDVLMA 80 (413)
Q Consensus 7 l~v-~~f~aHk~--iLaa~S~yF~~mf~~~~~E--s~~~~i~L~~~~v~~~~f~~lL~fiYtg~i~i~~-~~~v~~LL~a 80 (413)
+.| +.+..|+. +.+-.-....+||++...- .......| +-+-..|+-||+|+-|..+.+.+ ..++..|..-
T Consensus 13 lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI---DRDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~rE 89 (221)
T KOG2723|consen 13 LNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI---DRDGFLFRYVLDYLRTKALLLPEDFAEVERLVRE 89 (221)
T ss_pred eccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE---cCCcchHHHHHHHhcccccccchhhhhHHHHHHH
Confidence 455 44665543 3333445667788763322 22234555 45778999999999996666654 2468999999
Q ss_pred HhhhchhhHHHHHhH
Q 015106 81 ADKFEVASCMRYCSR 95 (413)
Q Consensus 81 A~~lqv~~L~~~C~~ 95 (413)
|++||++.....+.+
T Consensus 90 A~f~~l~~~~~~l~~ 104 (221)
T KOG2723|consen 90 AEFFQLEAPVTYLLN 104 (221)
T ss_pred HHHHccccHHHHHhc
Confidence 999999987765433
No 71
>smart00061 MATH meprin and TRAF homology.
Probab=68.49 E-value=31 Score=26.00 Aligned_cols=76 Identities=12% Similarity=0.119 Sum_probs=47.3
Q ss_pred eCCeEEEeeeeeCCcceeeeeeeccCCCCCceeeeeEEeeeccCc----eeEEEEEEEeeeccCccccccccceeEEEeC
Q 015106 298 PAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGS----VSFAVDYEFAARIKPTEEYVSKYKGNYTFTG 373 (413)
Q Consensus 298 ~~g~iY~~~f~~gg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~f~~~~~~~~~~t~ 373 (413)
.+..+++..|..||+...+....+ -...+++|...+... -++..++++-.-+....+. . -...++|..
T Consensus 14 ~~~~~~S~~f~~~g~~W~i~~~p~------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~-~-~~~~~~F~~ 85 (95)
T smart00061 14 EGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL-S-KKDKHVFEK 85 (95)
T ss_pred cCceEeCChhEEcCceeEEEEEEc------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE-e-eeeeEEEcC
Confidence 356788888899998877777655 134777877644322 2477777777766654444 2 235677765
Q ss_pred Ceeccccc
Q 015106 374 GKAVGYRN 381 (413)
Q Consensus 374 ~~~~~~~~ 381 (413)
....|+.+
T Consensus 86 ~~~~G~~~ 93 (95)
T smart00061 86 PSGWGFSK 93 (95)
T ss_pred CCccceee
Confidence 33445543
No 72
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=67.95 E-value=31 Score=29.30 Aligned_cols=105 Identities=15% Similarity=0.197 Sum_probs=51.6
Q ss_pred EEEeeee--eCCcceeeeeeeccCCCCCceeeeeEEeeeccCc-----eeEEEEEEEeeeccCccccccccceeEEEeCC
Q 015106 302 IYSQAFH--LGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGS-----VSFAVDYEFAARIKPTEEYVSKYKGNYTFTGG 374 (413)
Q Consensus 302 iY~~~f~--~gg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~f~~~~~~~~~~t~~ 374 (413)
|++..|. .||+...+...-+-+..+....-++++.+..+.. -++...+.|..-... ++ ++ .-.++++..
T Consensus 25 i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~~~lldq~-~~--~~-~~~~~~~~~ 100 (147)
T cd03776 25 IHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTITLTLLDQS-EP--RQ-NIHETMMSK 100 (147)
T ss_pred EECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeEEEEECCC-cc--cC-ccEEEEEcC
Confidence 7777786 4687765554443333223344667777644321 124444444433221 11 00 001111110
Q ss_pred ee-ccc------cccCCCCCceeee----cCCceeecceeeeeeeee
Q 015106 375 KA-VGY------RNLFGIPWTAFMA----DDSIYFINGNLHLRAELT 410 (413)
Q Consensus 375 ~~-~~~------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 410 (413)
+. ..| +|..+--|..||. +++.|..|+.|++|++++
T Consensus 101 ~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 101 PELLAFQRPTTDRNPKGFGYVEFAHIEDLLQRGFVKNDTLLIKIEVN 147 (147)
T ss_pred CChHhhcCCCcCCCCCCeeEceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence 00 001 1222334677776 557788999999999875
No 73
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=60.86 E-value=4.2 Score=39.31 Aligned_cols=56 Identities=11% Similarity=0.024 Sum_probs=45.7
Q ss_pred CCChhhHHHHhhcccchHhhhccHHHHHHHHHHHHhhcccccccchhhcCCCHHHHHHhh
Q 015106 101 PMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVL 160 (413)
Q Consensus 101 ~l~~~n~l~i~~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~~efl~L~~~~l~~lL 160 (413)
.++++|++.++-.++ .-.++.|.+.|..|+.+|+.+|+...-++..|+.+.+..|-
T Consensus 71 ~l~~~NvvsIliSS~----FL~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RLa 126 (317)
T PF11822_consen 71 SLTPSNVVSILISSE----FLQMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRLA 126 (317)
T ss_pred cCCcCcEEEeEehhh----hhccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHHH
Confidence 689999998885543 34789999999999999999999845577789988777663
No 74
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=57.54 E-value=10 Score=25.30 Aligned_cols=19 Identities=11% Similarity=-0.080 Sum_probs=13.6
Q ss_pred cCCceEEEecCCCCeeEec
Q 015106 268 RPVKVVEFELPRQQCVVYL 286 (413)
Q Consensus 268 ~~~~~ve~ydp~~~~W~~l 286 (413)
..++.+..||+.+++|+.+
T Consensus 26 ~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 26 SPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp EE---EEEEETTTTEEEE-
T ss_pred cccCCEEEEECCCCEEEEC
Confidence 3578899999999999985
No 75
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=56.84 E-value=10 Score=25.32 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=12.4
Q ss_pred cccceeEEee-CCeEEEeeeeeCCcc
Q 015106 289 KREECAHLFP-AGRIYSQAFHLGGQG 313 (413)
Q Consensus 289 ~r~~~~~~~~-~g~iY~~~f~~gg~~ 313 (413)
+|..|+++.+ ++.||+ +||+.
T Consensus 1 pR~~h~~~~~~~~~i~v----~GG~~ 22 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYV----FGGRD 22 (49)
T ss_dssp --BS-EEEEE-TTEEEE----E--EE
T ss_pred CcceEEEEEEeCCeEEE----ECCCC
Confidence 5788888877 599999 66643
No 76
>PF07713 DUF1604: Protein of unknown function (DUF1604); InterPro: IPR011666 This domain is found at the N terminus of several eukaryotic RNA processing proteins (e.g Q8N3B7 from SWISSPROT).
Probab=50.67 E-value=6.9 Score=30.16 Aligned_cols=17 Identities=47% Similarity=0.768 Sum_probs=13.8
Q ss_pred EEeCCeeccccccCCCC
Q 015106 370 TFTGGKAVGYRNLFGIP 386 (413)
Q Consensus 370 ~~t~~~~~~~~~~~~~~ 386 (413)
-||||+++||-|--|..
T Consensus 23 AFtGGfSAGyfNTVGSk 39 (87)
T PF07713_consen 23 AFTGGFSAGYFNTVGSK 39 (87)
T ss_pred cccCCcccceeeccCCc
Confidence 37899999999987653
No 77
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=50.52 E-value=24 Score=35.26 Aligned_cols=28 Identities=14% Similarity=0.325 Sum_probs=26.1
Q ss_pred hhHHHHHHHHhhhchhhHHHHHhHchhc
Q 015106 72 TALLDVLMAADKFEVASCMRYCSRLLRN 99 (413)
Q Consensus 72 ~~v~~LL~aA~~lqv~~L~~~C~~~L~~ 99 (413)
+||-.++.+|.+|+++.|.+.|..|+..
T Consensus 148 ~NvCmifdaA~ly~l~~Lt~~C~mfmDr 175 (620)
T KOG4350|consen 148 ENVCMIFDAAYLYQLTDLTDYCMMFMDR 175 (620)
T ss_pred cceeeeeeHHHHhcchHHHHHHHHHHhc
Confidence 6888999999999999999999999876
No 78
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=49.27 E-value=21 Score=35.76 Aligned_cols=34 Identities=6% Similarity=-0.082 Sum_probs=27.1
Q ss_pred ceEEEecCCCCeeEe-----cccccccee-EEeeCCeEEE
Q 015106 271 KVVEFELPRQQCVVY-----LDLKREECA-HLFPAGRIYS 304 (413)
Q Consensus 271 ~~ve~ydp~~~~W~~-----l~~~r~~~~-~~~~~g~iY~ 304 (413)
.....||.++++|.. -|.+|+.|. ||+..|.+|+
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~ 137 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWL 137 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEE
Confidence 567889999999998 567888765 5566798888
No 79
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.33 E-value=21 Score=35.10 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=29.7
Q ss_pred CceEEEecCCCCeeEecc----ccccceeEEeeCC-eEEEeeeeeCC
Q 015106 270 VKVVEFELPRQQCVVYLD----LKREECAHLFPAG-RIYSQAFHLGG 311 (413)
Q Consensus 270 ~~~ve~ydp~~~~W~~l~----~~r~~~~~~~~~g-~iY~~~f~~gg 311 (413)
...+..|||.+|+|..|+ ..-.++.++.+++ .||+ .||
T Consensus 112 ~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f----~GG 154 (381)
T COG3055 112 FNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYF----FGG 154 (381)
T ss_pred eeeeEEecCCCChhheeccccccccccceeEecCCceEEE----Ecc
Confidence 467889999999999944 3334667778888 9998 788
No 80
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=46.70 E-value=36 Score=35.10 Aligned_cols=117 Identities=15% Similarity=0.029 Sum_probs=72.3
Q ss_pred eEEEecCCCCeeEe------ccccccceeEEeeCCeEEEeeeeeCCccee-------eeeeeccCCCCC-----------
Q 015106 272 VVEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQGFF-------LSAHCNMDQQSS----------- 327 (413)
Q Consensus 272 ~ve~ydp~~~~W~~------l~~~r~~~~~~~~~g~iY~~~f~~gg~~~~-------~~~~~~~~~~~~----------- 327 (413)
..-.-|..+-.|.. -|.+|+-|++.++|+++|+ +||.-.. ..-.|.++=.++
T Consensus 231 DLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyv----fGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W 306 (830)
T KOG4152|consen 231 DLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYV----FGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAW 306 (830)
T ss_pred ceeEEecceeecccccccCCCCCCcccccceeecceeEE----ecceeeeeccccccccccceeeeccceeeeeecchhe
Confidence 34455788888987 6789999999999999999 4442111 111222222222
Q ss_pred --------------ceeeeeEEeeeccCceeEEEEEEEeeeccC--ccccccccceeEEEe----CCeec-----ccccc
Q 015106 328 --------------FHCFGLFLGMQEKGSVSFAVDYEFAARIKP--TEEYVSKYKGNYTFT----GGKAV-----GYRNL 382 (413)
Q Consensus 328 --------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~f~~~~~~~~~~t----~~~~~-----~~~~~ 382 (413)
.-+=|||.+.-+++ =|-..+|.|. ..+=-.|.++-.-+- -+++- .-.|+
T Consensus 307 ~tl~~d~~ed~tiPR~RAGHCAvAigtR------lYiWSGRDGYrKAwnnQVCCkDlWyLdTekPp~P~~VQL~rA~tNS 380 (830)
T KOG4152|consen 307 ETLLMDTLEDNTIPRARAGHCAVAIGTR------LYIWSGRDGYRKAWNNQVCCKDLWYLDTEKPPPPARVQLVRANTNS 380 (830)
T ss_pred eeeeeccccccccccccccceeEEeccE------EEEEeccchhhHhhccccchhhhhhhcccCCCCCceEEEEecccce
Confidence 24455665554442 1777888887 334445666666554 23331 44589
Q ss_pred CCCCCceeeecCCceee
Q 015106 383 FGIPWTAFMADDSIYFI 399 (413)
Q Consensus 383 ~~~~~~~~~~~~~~~~~ 399 (413)
|-+-|.++---|+ |++
T Consensus 381 levsW~~V~ta~g-YlL 396 (830)
T KOG4152|consen 381 LEVSWGAVATADG-YLL 396 (830)
T ss_pred eEEechhhccccc-eeE
Confidence 9999999887777 643
No 81
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=44.07 E-value=19 Score=34.53 Aligned_cols=76 Identities=17% Similarity=0.302 Sum_probs=51.1
Q ss_pred EEEeehhhhcccC-HHHHHhhcCCCC---CCCccEEEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHHHHHHhhhch
Q 015106 11 TVHISSPILAAKS-PFFYKLFSNGMR---ESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEV 86 (413)
Q Consensus 11 ~f~aHk~iLaa~S-~yF~~mf~~~~~---Es~~~~i~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~LL~aA~~lqv 86 (413)
.|-+.+.+|.+.- .-.-.||.++.. .....+.++- ++++...|+.||+|--+|.+.-...-.|-+|-+|+|||.|
T Consensus 106 rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVA-dGi~s~vFRAILdYYksG~iRCP~~vSvpELrEACDYLli 184 (438)
T KOG3840|consen 106 RFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVA-DGMTSSCFRAILDYYQSGTMRCPSSVSVSELREACDYLLV 184 (438)
T ss_pred EEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehh-cchhHHHHHHHHHHHhcCceeCCCCCchHHHHhhcceEEe
Confidence 4666777776532 134466766432 1223445553 4899999999999999999886543467888888888876
Q ss_pred h
Q 015106 87 A 87 (413)
Q Consensus 87 ~ 87 (413)
+
T Consensus 185 p 185 (438)
T KOG3840|consen 185 P 185 (438)
T ss_pred e
Confidence 5
No 82
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=39.40 E-value=2.4e+02 Score=24.02 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=18.8
Q ss_pred CCCceeee----cCCceeecceeeeeeee
Q 015106 385 IPWTAFMA----DDSIYFINGNLHLRAEL 409 (413)
Q Consensus 385 ~~~~~~~~----~~~~~~~~~~~~~~~~~ 409 (413)
.-|+.||. +.+.|..|+-|++|+++
T Consensus 125 ~G~~~fi~~~~Le~~~yl~dD~l~Irc~v 153 (154)
T cd03781 125 FGYPKFISHEDLKKRNYIKDDAIFLRASV 153 (154)
T ss_pred cchhHeeEHHHHhhCCcccCCEEEEEEEe
Confidence 34677776 55678889999999875
No 83
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=32.19 E-value=2.3e+02 Score=24.17 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=30.4
Q ss_pred eEEEeee--eeCCcceeeeeeeccCCCCCceeeeeEEeeecc-----CceeEEEEEEEee
Q 015106 301 RIYSQAF--HLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEK-----GSVSFAVDYEFAA 353 (413)
Q Consensus 301 ~iY~~~f--~~gg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~ 353 (413)
.|++..| +.||+...+.+--+=+.+.....-++++.+.+. -+-++...+.|..
T Consensus 24 ~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~tfsL 83 (148)
T cd03780 24 SIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLML 83 (148)
T ss_pred EEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEEEEE
Confidence 5899999 999988766553332222233456677766542 1223444555544
No 84
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=30.87 E-value=3.9e+02 Score=23.83 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=23.3
Q ss_pred eEEEeeeeeC--CcceeeeeeeccCCCCCceeeeeEEeeec
Q 015106 301 RIYSQAFHLG--GQGFFLSAHCNMDQQSSFHCFGLFLGMQE 339 (413)
Q Consensus 301 ~iY~~~f~~g--g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 339 (413)
.||+..|-.| ||...+.+--+=+.......-++++.+..
T Consensus 62 ~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ 102 (186)
T cd03777 62 SLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMR 102 (186)
T ss_pred EEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEec
Confidence 5888899999 77765544332222222345667777654
No 85
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=25.70 E-value=82 Score=19.92 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=13.3
Q ss_pred CeeEe-ccccccceeEEeeCCeEEEe
Q 015106 281 QCVVY-LDLKREECAHLFPAGRIYSQ 305 (413)
Q Consensus 281 ~~W~~-l~~~r~~~~~~~~~g~iY~~ 305 (413)
..|+. ++. ....+.++.+|.||+.
T Consensus 3 ~~W~~~~~~-~~~~~~~v~~g~vyv~ 27 (40)
T PF13570_consen 3 VLWSYDTGG-PIWSSPAVAGGRVYVG 27 (40)
T ss_dssp EEEEEE-SS----S--EECTSEEEEE
T ss_pred eeEEEECCC-CcCcCCEEECCEEEEE
Confidence 36877 554 4445668889999973
No 86
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=23.88 E-value=54 Score=24.74 Aligned_cols=18 Identities=44% Similarity=0.787 Sum_probs=13.9
Q ss_pred eeEEEe------CCeeccccccCC
Q 015106 367 GNYTFT------GGKAVGYRNLFG 384 (413)
Q Consensus 367 ~~~~~t------~~~~~~~~~~~~ 384 (413)
|+|.|- |||+-||.+.=|
T Consensus 26 GsYiFRlSCTrLGQWAIGyV~~dg 49 (86)
T PF02762_consen 26 GSYIFRLSCTRLGQWAIGYVTQDG 49 (86)
T ss_dssp TEEEEEEESSSTTSEEEEEEETTS
T ss_pred ccEEEeeccccccceeEEEEcCCC
Confidence 666664 999999987654
No 87
>PF13028 DUF3889: Protein of unknown function (DUF3889)
Probab=22.60 E-value=1.1e+02 Score=24.40 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=25.8
Q ss_pred cCceeEEEEEEEeeeccCccccccccceeEEEe---CCeec
Q 015106 340 KGSVSFAVDYEFAARIKPTEEYVSKYKGNYTFT---GGKAV 377 (413)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~t---~~~~~ 377 (413)
+=+.--.+||++.+|+.-+++= ..+.|.|| ||+..
T Consensus 37 ~Yp~a~v~DY~~vGr~~~~~~~---t~e~Fkl~l~~~~kef 74 (97)
T PF13028_consen 37 KYPGAEVVDYLYVGRTKVNDEQ---TVEKFKLWLREGGKEF 74 (97)
T ss_pred HCCCCEEeeeeeecceecCCcc---eEEEEEEEEEcCCeEE
Confidence 4345578999999999987763 46777887 66554
No 88
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=20.60 E-value=1.9e+02 Score=29.83 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=36.1
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHHHHHHhhhchhh-HHHHHhH
Q 015106 38 EQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVAS-CMRYCSR 95 (413)
Q Consensus 38 ~~~~i~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~LL~aA~~lqv~~-L~~~C~~ 95 (413)
.+++.-+ +=+|.+|..+++|-+||++.....--.....+--+|.+|++ -++.||.
T Consensus 79 ~~~EyfF---DR~P~~F~~Vl~fYrtGkLH~p~~vC~~~F~eEL~yWgI~~~~le~CC~ 134 (477)
T KOG3713|consen 79 VTNEYFF---DRHPGAFAYVLNFYRTGKLHVPADVCPLSFEEELDYWGIDEAHLESCCW 134 (477)
T ss_pred ccCeeee---ccChHHHHHHHHHHhcCeeccccccchHHHHHHHHHhCCChhhhhHHhH
Confidence 3566666 56899999999999999998654112233334447888755 2334443
Done!