BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015110
(413 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HM7|A Chain A, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|B Chain B, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|C Chain C, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|D Chain D, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|E Chain E, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|F Chain F, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
Length = 448
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/335 (36%), Positives = 175/335 (52%), Gaps = 20/335 (5%)
Query: 63 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXX 122
V I+ G I+S ++E +S G +D + PG++DVH H ++PGRTEWEGF S
Sbjct: 26 VAIRNG-IVSAITEPG-SISSDDGPAIDGTGLHLFPGMVDVHVHFNEPGRTEWEGFASGS 83
Query: 123 XXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 182
DMPLNS+P TI+ E L K A ++ VD FWGGLVP N L
Sbjct: 84 KSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVDYRFWGGLVPG---NIDHL 140
Query: 183 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK--GSERH 240
+ L + GV+G K+FM G +DF ++ + +G+ +A L VHAE + +
Sbjct: 141 QDLHDGGVIGFKAFMSECGTDDFQFSHDETLLKGMKKIAALGSILAVHAESNEMVNALTT 200
Query: 241 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXX 300
+ +E+ L + YS + RP E A+ +L A+ T +HI H
Sbjct: 201 IAIEEQRLTVKDYS---EARPIVSELEAVERILRFAQLT-------CCPIHICHVSSRKV 250
Query: 301 XXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 360
+AK G +++VETCPHYL FS +E + KCAPP+R+ E LW+ LM G
Sbjct: 251 LKRIK-QAKGEGVNVSVETCPHYLLFSLDEFAEIGYLAKCAPPLRERQEVEDLWDGLMAG 309
Query: 361 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 395
ID++SSDHSP++P++K + WGGI+ Q
Sbjct: 310 EIDLISSDHSPSLPQMK--TGKTIFEVWGGIAGCQ 342
>pdb|3E74|A Chain A, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|B Chain B, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|C Chain C, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|D Chain D, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
Length = 473
Score = 181 bits (458), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 113/325 (34%), Positives = 154/325 (47%), Gaps = 29/325 (8%)
Query: 87 QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTIS 146
+V D V+ PG +D H H+ +PGR+ WEG+ + I+ PLN P+T+
Sbjct: 62 EVXDASGLVVSPGXVDAHTHISEPGRSHWEGYETGTRAAAKGGITTXIEXPLNQLPATVD 121
Query: 147 TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI---- 202
+++LK DAA+ ++ +D GGLV +YN L L GV+G F+ G
Sbjct: 122 RASIELKFDAAKGKLTIDAAQLGGLV---SYNIDRLHELDEVGVVGFXCFVATCGDRGID 178
Query: 203 NDFPMTNASHIKEGLSVLARYKRPLLVHAEM-----EKGSERHVKLEDDTLDTRSYSTYL 257
NDF N +G L +P+LVH E E G E K E + Y+
Sbjct: 179 NDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEE--AKREGRV----TAHDYV 232
Query: 258 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITV 317
+RP E AIR +L +AK G LH+ H A+ G IT
Sbjct: 233 ASRPVFTEVEAIRRVLYLAK-------VAGCRLHVCHVSSPEGVEEV-TRARQEGQDITC 284
Query: 318 ETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK 377
E+CPHY ++ + T KC+PPIRD N++ WE L +G ID L SDHSP PE K
Sbjct: 285 ESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGXWEKLFNGEIDCLVSDHSPCPPEXK 344
Query: 378 LLDEGNFLKAWGGISSLQIFCSLFF 402
GN KAWGGI+ LQ + F
Sbjct: 345 ---AGNIXKAWGGIAGLQSCXDVXF 366
>pdb|1GKR|A Chain A, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|B Chain B, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|C Chain C, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|D Chain D, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
Length = 458
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 141/323 (43%), Gaps = 23/323 (7%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
R+V+ G+ + +K+G + +I ++ S+T +D G +MPG++D H H+ D
Sbjct: 10 RLVSSDGITEADILVKDGKVAAISADTSDVEASRT---IDAGGKFVMPGVVDEHVHIIDM 66
Query: 111 G-RTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 169
+ + F +I+MP+ P+T L+ K A + R+ VD +G
Sbjct: 67 DLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQ-RLKVDFALYG 125
Query: 170 GLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 229
G VP N + + +AG +G S M S F + + E +A ++V
Sbjct: 126 GGVPGNL---PEIRKMHDAGAVGFXSMMAASVPGMFDAVSDGELFEIFQEIAACGSVIVV 182
Query: 230 HAEME---KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 286
HAE E + ++ +K + + Y ++P E AI+ L + K+
Sbjct: 183 HAENETIIQALQKQIK----AAGGKDMAAYEASQPVFQENEAIQRALLLQKEA------- 231
Query: 287 GAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD 346
G L ++H +A++ G + E+ P YL + ++ K APP+R
Sbjct: 232 GCRLIVLHVSNPDGVELIH-QAQSEGQDVHCESGPQYLNITTDDAERIGPYMKVAPPVRS 290
Query: 347 AANKEKLWEALMDGHIDMLSSDH 369
A +LWE L +G ID L SDH
Sbjct: 291 AEMNIRLWEQLENGLIDTLGSDH 313
>pdb|3MPG|A Chain A, Dihydroorotase From Bacillus Anthracis
pdb|3MPG|B Chain B, Dihydroorotase From Bacillus Anthracis
Length = 428
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 135/339 (39%), Gaps = 32/339 (9%)
Query: 44 QYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDV 103
Y + R + +G I + + I+ V+E N+ +V+D +I PGL+DV
Sbjct: 2 NYLFKNGRYMNEEGKIVATDLLVQDGKIAKVAENITADNA---EVIDVNGKLIAPGLVDV 58
Query: 104 HAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYV 163
H HL +PG E + + MP N+ P E ++ + +++ +V
Sbjct: 59 HVHLREPGGEHKETIETGTLAAAKGGFTTICAMP-NTRPVPDCREHMEDLQNRIKEKAHV 117
Query: 164 DVGFWGGL-VPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR 222
+V +G + V + + E L G + + +AS + + A+
Sbjct: 118 NVLPYGAITVRQAGSEMTDFETLKELGAFAFTD-------DGVGVQDASMMLAAMKRAAK 170
Query: 223 YKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 278
++ H E + KG K S L P E I + +A+
Sbjct: 171 LNMAVVAHCEENTLINKGCVHEGKF--------SEKHGLNGIPSVCESVHIARDILLAE- 221
Query: 279 TRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRF 338
A H H+ H +AK G +T E PH+L ++IP D F
Sbjct: 222 ------AADCHYHVCHVSTKGSVRVIR-DAKRAGIKVTAEVTPHHLVLCEDDIPSADPNF 274
Query: 339 KCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK 377
K PP+R + E L E L+DG IDM+++DH+P E K
Sbjct: 275 KMNPPLRGKEDHEALIEGLLDGTIDMIATDHAPHTAEEK 313
>pdb|2Z00|A Chain A, Crystal Structure Of Dihydroorotase From Thermus
Thermophilus
Length = 426
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 106/368 (28%), Positives = 153/368 (41%), Gaps = 40/368 (10%)
Query: 51 RIVTPKGVISGA-VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDD 109
R+V +G A V I EG I+S+ + QVVD + PG +D+HAHL +
Sbjct: 8 RLVDARGERGPADVLIGEGRILSL-------EGGEAKQVVDGTGCFLAPGFLDLHAHLRE 60
Query: 110 PGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 169
PG E S L+ P N+ P + E ++ + A+
Sbjct: 61 PGEEVKEDLFSGLLAAVRGGYTDLVSXP-NTKPPVDTPEAVRALKEKAK----------- 108
Query: 170 GLVPENAYNASALEALLNAGVLGLKSFMCPSG---INDFPMTN--ASHIKEGLSVLARYK 224
L + A+AL L + +G + D TN A + GL A
Sbjct: 109 ALGLARLHPAAALTEKQEGKTLTPAGLLREAGAVLLTDDGRTNEDAGVLAAGLLXAAPLG 168
Query: 225 RPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 284
P+ VHAE + G R+ D L + L PP E A I L V + P
Sbjct: 169 LPVAVHAE-DAGLRRNGVXNDGPL---ADLLGLPGNPPEAEAARIARDLEVLRYALRRSP 224
Query: 285 AEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI 344
A LH+ H EAK G +T E PH+L + E + D FK APP+
Sbjct: 225 AT-PRLHVQHLSTKRGLELV-REAKRAGLPVTAEATPHHLTLTEEALRTFDPLFKVAPPL 282
Query: 345 RDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQIFCSLFF- 402
R ++E L E L+DG +D +++DH+P T+ E E + L+A GI SL++ L +
Sbjct: 283 RGEEDREALLEGLLDGTLDAIATDHAPHTLAE----KEKDLLRAPFGIPSLEVAFPLLYT 338
Query: 403 ---LSRGL 407
L RG
Sbjct: 339 ELHLKRGF 346
>pdb|1XRF|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
pdb|1XRT|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
pdb|1XRT|B Chain B, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
Length = 467
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 120/288 (41%), Gaps = 26/288 (9%)
Query: 87 QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTIS 146
+++D ++ PG ID+H HL DPG+T E S ++ MP N++P +
Sbjct: 89 EIIDAKGLIVCPGFIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMP-NTNPPIDN 147
Query: 147 TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-F 205
T + + ++ VG L + + A LK C + +D
Sbjct: 148 TTVVNYILQKSK-----SVGLCRVLPTGTITKGRKGKEI--ADFYSLKEAGCVAFTDDGS 200
Query: 206 PMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL--KTRPPS 263
P+ ++S +++ L + ++ P++ H E +K L ++ S L +R P
Sbjct: 201 PVMDSSVMRKALELASQLGVPIMDHCEDDK-------LAYGVINEGEVSALLGLSSRAPE 253
Query: 264 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHY 323
EE I +A+ T G H+HI H K G IT E P++
Sbjct: 254 AEEIQIARDGILAQRT-------GGHVHIQHVSTKLSLEIIEF-FKEKGVKITCEVNPNH 305
Query: 324 LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP 371
L F+ E+ + + PP+R ++ L E + G ID ++DH+P
Sbjct: 306 LLFTEREVLNSGANARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAP 353
>pdb|3D6N|A Chain A, Crystal Structure Of Aquifex Dihydroorotase Activated By
Aspartate Transcarbamoylase
Length = 422
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 120/288 (41%), Gaps = 26/288 (9%)
Query: 87 QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTIS 146
+++D ++ PG ID+H HL DPG+T E S ++ MP N++P +
Sbjct: 44 EIIDAKGLIVCPGFIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMP-NTNPPIDN 102
Query: 147 TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-F 205
T + + ++ VG L + + A LK C + +D
Sbjct: 103 TTVVNYILQKSK-----SVGLCRVLPTGTITKGRKGKEI--ADFYSLKEAGCVAFTDDGS 155
Query: 206 PMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL--KTRPPS 263
P+ ++S +++ L + ++ P++ H E +K L ++ S L +R P
Sbjct: 156 PVMDSSVMRKALELASQLGVPIMDHCEDDK-------LAYGVINEGEVSALLGLSSRAPE 208
Query: 264 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHY 323
EE I +A+ T G H+HI H K G IT E P++
Sbjct: 209 AEEIQIARDGILAQRT-------GGHVHIQHVSTKLSLEIIEF-FKEKGVKITCEVNPNH 260
Query: 324 LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP 371
L F+ E+ + + PP+R ++ L E + G ID ++DH+P
Sbjct: 261 LLFTEREVLNSGANARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAP 308
>pdb|1YNY|A Chain A, Molecular Structure Of D-Hydantoinase From A Bacillus Sp.
Ar9: Evidence For Mercury Inhibition
pdb|1YNY|B Chain B, Molecular Structure Of D-Hydantoinase From A Bacillus Sp.
Ar9: Evidence For Mercury Inhibition
Length = 461
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 145/354 (40%), Gaps = 36/354 (10%)
Query: 46 WLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHA 105
W+ +VT V I+ +++I + + + +D ++PG ID H
Sbjct: 4 WIRGGTVVTAADTYQADVLIEGERVVAIGHQ----LSVNGAEEIDATGCYVIPGGIDPHT 59
Query: 106 HLDDP--GRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKV----DAAEK 159
HLD P G + F + ++D L T E+LK + + A
Sbjct: 60 HLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFCL-----TKKGESLKSAIATWHEKARG 114
Query: 160 RIYVDVGFWGGLVPENAYNASALEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKEGLS 218
+ +D GF + N LE+++++ G+ LK FM N F + + K +
Sbjct: 115 KAVIDYGFHLMIAEANDQVLEELESVISSEGITSLKVFMAYK--NVFQADDETLFK---T 169
Query: 219 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY-LKTRPPSWE-EAAIRELLTVA 276
++ + LV E G + + + Y TRPP E EA R + A
Sbjct: 170 LVKAKELGALVQVHAENGDVLDYLTKKALAEGNTDPIYHAYTRPPEAEGEATGRAIALTA 229
Query: 277 KDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAF--SAEEIPDG 334
G+ L++VH EA+ G ++ ETCP YLA S + PD
Sbjct: 230 --------LAGSQLYVVHVSCASAVQRIA-EAREKGWNVYGETCPQYLALDVSIMDQPDF 280
Query: 335 D-TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLK 386
+ ++ +PP+R+ N+E LW AL +G + + SDH P K L G+F K
Sbjct: 281 EGAKYVWSPPLREKWNQEVLWSALKNGILQTVGSDHCPFNFRGQKELGRGDFTK 334
>pdb|3SFW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Brevibacillus Agri Nchu1002
pdb|3SFW|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Brevibacillus Agri Nchu1002
Length = 461
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 140/336 (41%), Gaps = 31/336 (9%)
Query: 46 WLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHA 105
W+ + +VT V I +++I S+ + +V+D ++PG ID H
Sbjct: 4 WIRNGTVVTASDTYQADVLIDGEKVVAIGSD----LQATDAEVIDATGYYLLPGGIDPHT 59
Query: 106 HLDDP--GRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYV 163
HLD P G + F + ++D L S ++ + A K + +
Sbjct: 60 HLDMPFGGTVTSDNFFTGTKAAAFGGTTSIVDFCLTSKGESLHSAIATWHEKARGKAV-I 118
Query: 164 DVGFWGGLVPENAYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR 222
D GF + N + LE+++N G+ L FM + M + + + L
Sbjct: 119 DYGFHLMVSDANDHVLEELESVVNNEGITSLXVFMAYKNV---LMADDETLFKTLIRAKE 175
Query: 223 YKRPLLVHAEMEKGSERHVK--LEDDTLDTRSYSTYLKTRPPSWE-EAAIREL-LTVAKD 278
+ VHAE + K L + D Y Y TRPP E EA R + LT D
Sbjct: 176 LGALVQVHAENGDVLDYLTKQALAEGNTDP-IYHAY--TRPPEAEGEATGRAIALTALAD 232
Query: 279 TRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAF--SAEEIPDGD- 335
A L++VH EA+ G ++ ETCP YL +A E PD +
Sbjct: 233 ---------AQLYVVHVSCADAVRRIA-EAREKGWNVYGETCPQYLVLDITALEKPDFEG 282
Query: 336 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP 371
++ +PP+R+ N++ LW AL +G + + SDH P
Sbjct: 283 AKYVWSPPLREKWNQDVLWSALKNGILQTVGSDHCP 318
>pdb|3GRI|A Chain A, The Crystal Structure Of A Dihydroorotase From
Staphylococcus Aureus
pdb|3GRI|B Chain B, The Crystal Structure Of A Dihydroorotase From
Staphylococcus Aureus
Length = 424
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 120/312 (38%), Gaps = 35/312 (11%)
Query: 67 EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXX 126
+G +I ++ P N ++D + PG +DVH HL +PG E +
Sbjct: 23 DGKVIKQIAPAIEPSNGV--DIIDAKGHFVSPGFVDVHVHLREPGGEYKETIETGTKAAA 80
Query: 127 XXXXXXLIDMPLNSDPSTISTETL----KLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 182
+ P N+ P S E KL D A+ R+ + + +
Sbjct: 81 RGGFTTVCPXP-NTRPVPDSVEHFEALQKLIDDNAQVRV---LPYASITTRQLGKELVDF 136
Query: 183 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE---MEKGSER 239
AL+ G G+ + AS EG A+ + ++ H E + G
Sbjct: 137 PALVKEGAFAFTD----DGVG---VQTASXXYEGXIEAAKVNKAIVAHCEDNSLIYGGAX 189
Query: 240 HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXX 299
H RS + P E I + +A+ A G H H+ H
Sbjct: 190 HE-------GKRSKELGIPGIPNICESVQIARDVLLAE-------AAGCHYHVCHVSTKE 235
Query: 300 XXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD 359
+AK G +T E PH+L + ++IP + +K PP+R ++E L E L+D
Sbjct: 236 SVRVI-RDAKRAGIHVTAEVTPHHLLLTEDDIPGNNAIYKXNPPLRSTEDREALLEGLLD 294
Query: 360 GHIDMLSSDHSP 371
G ID +++DH+P
Sbjct: 295 GTIDCIATDHAP 306
>pdb|1K1D|A Chain A, Crystal Structure Of D-Hydantoinase
pdb|1K1D|B Chain B, Crystal Structure Of D-Hydantoinase
pdb|1K1D|C Chain C, Crystal Structure Of D-Hydantoinase
pdb|1K1D|D Chain D, Crystal Structure Of D-Hydantoinase
pdb|1K1D|E Chain E, Crystal Structure Of D-Hydantoinase
pdb|1K1D|F Chain F, Crystal Structure Of D-Hydantoinase
pdb|1K1D|G Chain G, Crystal Structure Of D-Hydantoinase
pdb|1K1D|H Chain H, Crystal Structure Of D-Hydantoinase
Length = 460
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 97/374 (25%), Positives = 144/374 (38%), Gaps = 37/374 (9%)
Query: 52 IVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP- 110
IVT + IK+G I I + K +V+D + PG ID H HLD P
Sbjct: 10 IVTATDTYEAHLLIKDGKIAMIGQNLE----EKGAEVIDAKGCYVFPGGIDPHTHLDMPL 65
Query: 111 -GRTEWEGFPSXXXXXXXXXXXXLIDMPLNS--DPSTISTETLKLKVDAAEKRIYVDVGF 167
G + F S +ID L + +P + ET K A + +D GF
Sbjct: 66 GGTVTKDDFESGTIAAAFGGTTTIIDFCLTNKGEPLKKAIETWHNK---ANGKAVIDYGF 122
Query: 168 WGGLVPENAYNASALE----ALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY 223
+ + LE L G+ L FM N F + + ++LA
Sbjct: 123 H---LMISEITDDVLEELPKVLEEEGITSLXVFMAYK--NVFQADDGTLY---CTLLAAK 174
Query: 224 KRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLK-TRPPSWEEAAIRELLTVAKDTRTD 282
+ LV E G + D + Y TRPP E A + +
Sbjct: 175 ELGALVMVHAENGDVIDYLTKKALADGNTDPIYHALTRPPELEGEATGRACQLTE----- 229
Query: 283 GPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAF--SAEEIPDGD-TRFK 339
G+ L++VH EA+ G + ETCP YL S E P+ + ++
Sbjct: 230 --LAGSQLYVVHVTCAQAVEKIA-EARNKGLDVWGETCPQYLVLDQSYLEKPNFEGAKYV 286
Query: 340 CAPPIRDAANKEKLWEALMDGHIDMLSSDH-SPTVPELKLLDEGNFLKAWGGISSLQIFC 398
+PP+R+ ++E LW AL +G + L SD S K L G+F K G ++
Sbjct: 287 WSPPLREKWHQEVLWNALKNGQLQTLGSDQCSFDFKGQKELGRGDFTKIPNGGPIIEDRV 346
Query: 399 SLFFLSRGLMGGNM 412
S+ F S G+ G +
Sbjct: 347 SILF-SEGVKKGRI 359
>pdb|2GWN|A Chain A, The Structure Of Putative Dihydroorotase From
Porphyromonas Gingivalis
Length = 452
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 83/351 (23%), Positives = 145/351 (41%), Gaps = 29/351 (8%)
Query: 47 LTSKRIVTPKG-VISGAVEIKEGNIISIVSEEDWPR--NSKTGQVVDYGEAVIMPGLIDV 103
L ++T +G G+V I +G IS + E + P N +V++ + PG ID
Sbjct: 7 LLRNALITNEGKTFPGSVXI-DGAFISRIIEGELPADDNLSADEVIECSGLRLFPGCIDD 65
Query: 104 HAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYV 163
H +PG T S D P + P+T L+ + A+ +
Sbjct: 66 QVHFREPGLTHKATIASESRAAVAGGVTSFXDXPNTNPPTTXWERLLEKRQIGADT-AWA 124
Query: 164 DVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY 223
+ GF+ G +N ++ L V GL F+ S N + N +++ +
Sbjct: 125 NYGFFFGGTNDNIDEIKRVDKHL---VPGLXLFLGSSTGNXL-VDNKETLEK---IFGEC 177
Query: 224 KRPLLVHAEME---KGSERHVKLE-DDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDT 279
+ H E E + ++ H K + + LD + +++ + +A E + +A+
Sbjct: 178 DLLIATHCEKEEIIRANKEHYKAKYGNDLDIH-FHPLIRSEEACYRSSA--EAVELAERX 234
Query: 280 RTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFK 339
A LHI+H + T IT E C H+L FS + R K
Sbjct: 235 -------NARLHILHLSTEKELSLFRNDIPTAQKRITSEVCVHHLWFSDTDYGRLGNRIK 287
Query: 340 CAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGG 390
P I+ +++E L A+ +G ID++++DH+P + K EG+ L+A G
Sbjct: 288 WNPAIKKESDREALRAAVRNGRIDIIATDHAPHLLREK---EGSCLQAASG 335
>pdb|1NFG|A Chain A, Structure Of D-Hydantoinase
pdb|1NFG|B Chain B, Structure Of D-Hydantoinase
pdb|1NFG|C Chain C, Structure Of D-Hydantoinase
pdb|1NFG|D Chain D, Structure Of D-Hydantoinase
Length = 457
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 122/324 (37%), Gaps = 25/324 (7%)
Query: 52 IVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG 111
IVT G+ + IK+G I I + +D + PG IDVH H++
Sbjct: 10 IVTADGISRADLGIKDGKITQIGGAL-----GPAERTIDAAGRYVFPGGIDVHTHVETVS 64
Query: 112 RTEWEGFPSXXXXXXXX--XXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 169
++D +++ K A K +D G+
Sbjct: 65 FNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSA-IDYGYHI 123
Query: 170 GLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 229
++ LE L + G+ FM G+N M + + + L + ++V
Sbjct: 124 IVLDPTDSVIEELEVLPDLGITSFXVFMAYRGMN---MIDDVTLLKTLDKAVKTGSLVMV 180
Query: 230 HAEMEKGSERHVKLEDDTLDTRSYSTYLK-TRPPSWEEAAIRELLTVAKDTRTDGPAEGA 288
HAE G + + ++ Y +RPP E A L +A+ A
Sbjct: 181 HAE--NGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVN-------A 231
Query: 289 HLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEI--PDGD-TRFKCAPPIR 345
++IVH M AK+ G ETC HYL + E++ PD + ++ PP R
Sbjct: 232 PIYIVHVTCEESLEEV-MRAKSRGVRALAETCTHYLYLTKEDLERPDFEGAKYVFTPPAR 290
Query: 346 DAANKEKLWEALMDGHIDMLSSDH 369
+ + LW AL +G + +SSDH
Sbjct: 291 AKKDHDVLWNALRNGVFETVSSDH 314
>pdb|1GKP|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|E Chain E, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|F Chain F, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKQ|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
Length = 458
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/337 (23%), Positives = 130/337 (38%), Gaps = 35/337 (10%)
Query: 87 QVVDYGEAVIMPGLIDVHAHLDDPGRTEW--EGFPSXXXXXXXXXXXXLIDM--PLNSDP 142
+V+D + PG ID H H+ P + + + I+M P +D
Sbjct: 41 EVIDATGKYVFPGFIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDD 100
Query: 143 STISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPS-- 200
+ E +L AE Y D F + + L ++ G+ F+
Sbjct: 101 AL---EGYQLWKSKAEGNSYCDYTFHMAVSKFDEKTEGQLREIVADGISSFXIFLSYKNF 157
Query: 201 -GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKT 259
G++D M + + L V+ + H E +E +L+ L
Sbjct: 158 FGVDDGEMYQTLRLAKELGVI------VTAHCE---NAELVGRLQQKLLSEGKTG----- 203
Query: 260 RPPSWEEAAIRELLTVAKDTR--TDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITV 317
P W E + E + R T GA ++VH M AK G I +
Sbjct: 204 --PEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLSCKPALDAA-MAAKARGVPIYI 260
Query: 318 ETC-PHYL--AFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVP 374
E+ PH+L AE ++ +PP+RD N++ LW+AL G ID + +DH P
Sbjct: 261 ESVIPHFLLDKTYAERGGVEAMKYIMSPPLRDKRNQKVLWDALAQGFIDTVGTDHCPFDT 320
Query: 375 ELKLLDEGNFLKAWGGISSLQIFCSLFF---LSRGLM 408
E KLL + F GI +++ +L + +SRG +
Sbjct: 321 EQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRL 357
>pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FVK|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVM|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
Length = 559
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 85/368 (23%), Positives = 135/368 (36%), Gaps = 71/368 (19%)
Query: 52 IVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG 111
I T + + + + G + I + D S +V+D A I PG ID H H+D+P
Sbjct: 12 ICTASDIYAAEIAVNNGKVQLIAASIDPSLGS---EVIDAEGAFITPGGIDAHVHVDEPL 68
Query: 112 R-------TEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDA-AEKRIYV 163
+ T S PS ++ E++KL VD +E+ +Y
Sbjct: 69 KLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALA-ESVKLDVDEYSEQTLYC 127
Query: 164 DVGFWGGLVPENAYNASALEAL---LNA-----GVLGLKSFMCPSG--INDFPMTNASHI 213
D G L + A E L L A GV + FM G I+D+ + +A +
Sbjct: 128 DYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVXMFMTYPGLQISDYDIMSAMYA 187
Query: 214 --KEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 271
K G + + + +V +E LE+ L Y + +RP E A
Sbjct: 188 TRKNGFTTMLHAENGDMVKWMIE-------ALEEQGLTDAYY--HGVSRPSIVEGEATNR 238
Query: 272 LLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYL------- 324
+T+A T D P H+ +A+T G + ETCP Y
Sbjct: 239 AITLA--TTMDTPILFVHV------SSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAIT 290
Query: 325 ------------------AFSAEEIPDGDTRF-----KCAPPIRDAANKEKLWEALMDGH 361
+ S + D RF C+PPIR ++ +W+ + +G
Sbjct: 291 RCHHHGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGT 350
Query: 362 IDMLSSDH 369
++ SDH
Sbjct: 351 FTIVGSDH 358
>pdb|3DC8|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
pdb|3DC8|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
Length = 490
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 84/361 (23%), Positives = 131/361 (36%), Gaps = 47/361 (13%)
Query: 52 IVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP- 110
IVT V+++ G I+ I N + +D +MPG ID H HL+ P
Sbjct: 10 IVTADLTYKADVKVEGGRIVEIGP------NLSGAETLDATGCYVMPGGIDPHTHLEMPF 63
Query: 111 -GRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF-- 167
G + F S ++D L S P E L + D R D F
Sbjct: 64 MGTYSSDDFESGTRAALAGGTTMVVDFALPS-PGQSLLEALTMW-DNKSTRANCDYSFHM 121
Query: 168 ----WGGLVPENAYNASALEALL-NAGVLGLKSFMCPSG---INDFPMTNASHIKEGLSV 219
WG E +N +E ++ + G+ FM G ++D M ++ L
Sbjct: 122 AITWWG----EQVFNE--METIVKDKGINTFXHFMAYKGALMVDDDEMFSSFQRCAALGA 175
Query: 220 LARYKRPLLVHAEM-EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 278
L LVHAE + ++ KL + Y +RP E A + +A
Sbjct: 176 LP------LVHAENGDVVAQLQAKLLAEGNSGPEAHAY--SRPAEVEGEAANRAIMIAD- 226
Query: 279 TRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGD--- 335
G ++IVH A+ G + E +L E D D
Sbjct: 227 ------MAGCPVYIVHTSCEQAHEAIR-RARAKGMRVFGEPLIQHLTLDETEYFDKDWDH 279
Query: 336 -TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 394
R +PP R+ +++ LW L G + ++++DH E K G+F + G L
Sbjct: 280 AARRVMSPPFRNKLHQDSLWAGLASGSLQVVATDHCAFTTEQKRFGVGDFTRIPNGTGGL 339
Query: 395 Q 395
+
Sbjct: 340 E 340
>pdb|4B91|A Chain A, Crystal Structure Of Truncated Human Crmp-5
pdb|4B91|B Chain B, Crystal Structure Of Truncated Human Crmp-5
pdb|4B92|A Chain A, Crystal Structure Of Truncated Human Crmp-5 Soaked With Zn
pdb|4B92|B Chain B, Crystal Structure Of Truncated Human Crmp-5 Soaked With Zn
Length = 484
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 14/160 (8%)
Query: 259 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVE 318
+RP E A ++T+A RT P +++V+ AK G + E
Sbjct: 220 SRPEELEAEATHRVITIAN--RTHCP-----IYLVNVSSISAGDVIA-AAKMQGKVVLAE 271
Query: 319 TCPHYLAFSAEEIPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTV 373
T + + D + PP+R D L L + +++++SDH P
Sbjct: 272 TTTAHATLTGLHYYHQDWSHAAAYVTVPPLRLDTNTSTYLMSLLANDTLNIVASDHRPFT 331
Query: 374 PELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNME 413
+ K + + +F K G+S +Q S+ + RG++GG M+
Sbjct: 332 TKQKAMGKEDFTKIPHGVSGVQDRMSVIW-ERGVVGGKMD 370
>pdb|4B90|A Chain A, Crystal Structure Of Wt Human Crmp-5
pdb|4B90|B Chain B, Crystal Structure Of Wt Human Crmp-5
Length = 586
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 14/160 (8%)
Query: 259 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVE 318
+RP E A ++T+A RT P +++V+ AK G + E
Sbjct: 241 SRPEELEAEATHRVITIAN--RTHCP-----IYLVNVSSISAGDVIA-AAKMQGKVVLAE 292
Query: 319 TCPHYLAFSAEEIPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTV 373
T + + D + PP+R D L L + +++++SDH P
Sbjct: 293 TTTAHATLTGLHYYHQDWSHAAAYVTVPPLRLDTNTSTYLMSLLANDTLNIVASDHRPFT 352
Query: 374 PELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNME 413
+ K + + +F K G+S +Q S+ + RG++GG M+
Sbjct: 353 TKQKAMGKEDFTKIPHGVSGVQDRMSVIW-ERGVVGGKMD 391
>pdb|2FTW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Dictyostelium Discoideum
Length = 521
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 75/349 (21%), Positives = 131/349 (37%), Gaps = 47/349 (13%)
Query: 67 EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSXXXX 124
E II +S+ P+ +VVD + +++PG ID H H P G + F
Sbjct: 31 ENGIIKEISKNIEPKEGI--KVVDATDKLLLPGGIDTHTHFQLPFMGTVSVDDFDIGTQA 88
Query: 125 XXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEK-----RIYVDVGFWGGLVPENAYNA 179
+ID + + ++ + K A EK ++V + +W V +
Sbjct: 89 AVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVNCDYSLHVAITWWSEQV------S 142
Query: 180 SALEALLNAGVLGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKR---PLLVHAE--- 232
+E L+ G+ SF C N F +T+ +E + R K VHAE
Sbjct: 143 REMEILVKE--RGVNSFXCFMAYKNSFMVTD----QEMYHIFKRCKELGAIAQVHAENGD 196
Query: 233 -MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLH 291
+ +G ++ +++ + S RP + E A + +A T ++
Sbjct: 197 MVFEGQKKMLEMGITGPEGHELS-----RPEALEAEATNRAIVIADSVCTP-------VY 244
Query: 292 IVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR----FKCAPPIR-D 346
IVH K G + E L + + D R F PPIR D
Sbjct: 245 IVHVQSIGAADVICKHRK-EGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRPD 303
Query: 347 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 395
K L + L G +D + +D+ + K + + +F K G++ ++
Sbjct: 304 PRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVE 352
>pdb|2VHL|A Chain A, The Three-Dimensional Structure Of The
N-Acetylglucosamine- 6-Phosphate Deacetylase From
Bacillus Subtilis
pdb|2VHL|B Chain B, The Three-Dimensional Structure Of The
N-Acetylglucosamine- 6-Phosphate Deacetylase From
Bacillus Subtilis
Length = 396
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 52 IVTPKGVI-SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106
IVT VI +G V I +G I ++ +E P+ + ++ ++V++PG+ID+H H
Sbjct: 12 IVTENEVIKNGYVGINDGKISTVSTER--PKEPYSKEIQAPADSVLLPGMIDIHIH 65
>pdb|3NQB|A Chain A, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3NQB|B Chain B, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3T81|A Chain A, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T81|B Chain B, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T8L|A Chain A, Crystal Structure Of Adenine Deaminase With MnFE
pdb|3T8L|B Chain B, Crystal Structure Of Adenine Deaminase With MnFE
Length = 608
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 68 GNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 108
G +I+ V E R++ QV+D G A + PGLID H H++
Sbjct: 61 GALIASVHEPASRRDAA--QVIDAGGAYVSPGLIDTHXHIE 99
>pdb|3MKV|A Chain A, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|B Chain B, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|C Chain C, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|D Chain D, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|E Chain E, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|F Chain F, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|G Chain G, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|H Chain H, Crystal Structure Of Amidohydrolase Eaj56179
Length = 426
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 78 DWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 107
D P S V+D IMPGLID+H H+
Sbjct: 39 DKPIKSSNAHVIDVKGKTIMPGLIDLHVHV 68
>pdb|1O12|A Chain A, Crystal Structure Of N-Acetylglucosamine-6-Phosphate
Deacetylase (Tm0814) From Thermotoga Maritima At 2.5 A
Resolution
pdb|1O12|B Chain B, Crystal Structure Of N-Acetylglucosamine-6-Phosphate
Deacetylase (Tm0814) From Thermotoga Maritima At 2.5 A
Resolution
Length = 376
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 52 IVTP-KGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106
IV P G +G VEI+EG I+ + E PR V+ PG +D H H
Sbjct: 20 IVDPIDGEFTGDVEIEEGKIVKVEKRECIPR------------GVLXPGFVDPHIH 63
>pdb|2I9U|A Chain A, Crystal Structure Of Guanine Deaminase From C.
Acetobutylicum With Bound Guanine In The Active Site
pdb|2I9U|B Chain B, Crystal Structure Of Guanine Deaminase From C.
Acetobutylicum With Bound Guanine In The Active Site
Length = 439
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 63 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106
+ + +G I S+ S + P K ++D+ +I+PG+ D+HAH
Sbjct: 34 IVVIDGKIASVSS--NLPDKYKGNPIIDFRNNIIIPGMNDLHAH 75
>pdb|1KCX|A Chain A, X-Ray Structure Of Nysgrc Target T-45
pdb|1KCX|B Chain B, X-Ray Structure Of Nysgrc Target T-45
Length = 518
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 71/189 (37%), Gaps = 18/189 (9%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
RI+ V +++G I I P KT ++ +++PG IDV+ +L P
Sbjct: 16 RIINDDQSFYADVYLEDGLIKQIGENLIVPGGVKT---IEANGRMVIPGGIDVNTYLQKP 72
Query: 111 --GRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEK-----RIYV 163
G T + F +ID + S++ T K A K ++V
Sbjct: 73 SQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGSSLLTSFEKWHEAADTKSCCDYSLHV 132
Query: 164 DVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY 223
D+ W V E LE L+ G+ SF D + S + E + L
Sbjct: 133 DITSWYDGVREE------LEVLVQDK--GVNSFQVYMAYKDLYQMSDSQLYEAFTFLKGL 184
Query: 224 KRPLLVHAE 232
+LVHAE
Sbjct: 185 GAVILVHAE 193
>pdb|4DZH|A Chain A, Crystal Structure Of An Adenosine Deaminase From
Xanthomonas Campestris (Target Nysgrc-200456) With Bound
Zn
Length = 472
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 53 VTPKGVI--SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106
+ P V+ AV + G I++++ D + V +A +MPGL++ H H
Sbjct: 26 IEPHAVVLEDHAVAVSNGVIVAVLPTADARVRFAPARTVSRPDAALMPGLVNAHTH 81
>pdb|3MTW|A Chain A, Crystal Structure Of L-Lysine, L-Arginine Carboxypeptidase
Cc2672 From Caulobacter Crescentus Cb15 Complexed With
N-Methyl Phosphonate Derivative Of L-Arginine
Length = 403
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 63 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 108
V + +G I SI + D T VD ++PGLID+H HLD
Sbjct: 25 VIVTDGRITSIGKKGDAVPAGAT--AVDLPGVTLLPGLIDMHVHLD 68
>pdb|3FEQ|A Chain A, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|B Chain B, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|C Chain C, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|D Chain D, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|E Chain E, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|F Chain F, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|G Chain G, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|H Chain H, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|I Chain I, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|J Chain J, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|K Chain K, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|L Chain L, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|M Chain M, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|N Chain N, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|O Chain O, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|P Chain P, Crystal Structure Of Uncharacterized Protein Eah89906
Length = 423
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 73 IVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 107
IV D P + Q +D +MPG ID H H+
Sbjct: 34 IVEVTDRPVDLPNAQAIDVRGKTVMPGFIDCHVHV 68
>pdb|3N2C|A Chain A, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|B Chain B, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|C Chain C, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|D Chain D, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|E Chain E, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|F Chain F, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|G Chain G, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|H Chain H, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|I Chain I, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|J Chain J, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|K Chain K, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|L Chain L, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|M Chain M, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|N Chain N, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|O Chain O, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|P Chain P, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
Length = 423
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 73 IVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 107
IV D P + Q +D +MPG ID H H+
Sbjct: 34 IVEVTDRPVDLPNAQAIDVRGKTVMPGFIDCHVHV 68
>pdb|2GSE|A Chain A, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|B Chain B, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|C Chain C, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|D Chain D, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2VM8|A Chain A, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|B Chain B, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|C Chain C, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|D Chain D, Human Crmp-2 Crystallised In The Presence Of Mg
Length = 501
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 22/195 (11%)
Query: 95 VIMPGLIDVHAHLD--DPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKL 152
+++PG IDVH D G T + F +ID + +P T
Sbjct: 75 MVIPGGIDVHTRFQMPDQGMTSADDFFQGTKAALAGGTTMIIDHVV-PEPGTSLLAAFDQ 133
Query: 153 KVDAAEKR------IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-F 205
+ A+ + ++VD+ W + E +EAL+ G+ SF+ D F
Sbjct: 134 WREWADSKSCCDYSLHVDISEWHKGIQEE------MEALVKDH--GVNSFLVYMAFKDRF 185
Query: 206 PMTNASHIKEGLSVLARYKRPLLVHAEM-EKGSERHVKLEDDTLDTRSYSTYLKTRPPSW 264
+T+ I E LSV+ VHAE + +E ++ D L ++ +RP
Sbjct: 186 QLTDC-QIYEVLSVIRDIGAIAQVHAENGDIIAEEQQRILD--LGITGPEGHVLSRPEEV 242
Query: 265 EEAAIRELLTVAKDT 279
E A+ +T+A T
Sbjct: 243 EAEAVNRAITIANQT 257
>pdb|2PUZ|A Chain A, Crystal Structure Of Imidazolonepropionase From
Agrobacterium Tumefaciens With Bound Product
N-Formimino-L-Glutamate
pdb|2PUZ|B Chain B, Crystal Structure Of Imidazolonepropionase From
Agrobacterium Tumefaciens With Bound Product
N-Formimino-L-Glutamate
Length = 419
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 61 GAVE-----IKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHL 107
GAVE ++ G I E D P + T + D G I P LID H HL
Sbjct: 35 GAVENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITPALIDCHTHL 87
>pdb|2GOK|A Chain A, Crystal Structure Of The Imidazolonepropionase From
Agrobacterium Tumefaciens At 1.87 A Resolution
pdb|2GOK|B Chain B, Crystal Structure Of The Imidazolonepropionase From
Agrobacterium Tumefaciens At 1.87 A Resolution
Length = 429
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 61 GAVE-----IKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHL 107
GAVE ++ G I E D P + T + D G I P LID H HL
Sbjct: 37 GAVENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITPALIDCHTHL 89
>pdb|2VUN|A Chain A, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|B Chain B, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|C Chain C, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|D Chain D, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
Length = 386
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 65 IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 107
+ E +I+ + E+ +++ ++D + + PGL+D H H+
Sbjct: 28 VVEDGLIAAIGGEELMKDAGDATIIDAAGSTVTPGLLDTHVHV 70
>pdb|3ICJ|A Chain A, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Pyrococcus Furiosus
Length = 534
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 86 GQVVDYGEAVIMPGLIDVHAHLDDPG 111
G+++D +MP D H HLD+ G
Sbjct: 83 GEIIDLKGKFVMPAFFDSHLHLDELG 108
>pdb|3IGH|X Chain X, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 86 GQVVDYGEAVIMPGLIDVHAHLDDPG 111
G++VD +MP D H HLD+ G
Sbjct: 49 GEIVDLKGKYVMPAFFDSHLHLDELG 74
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 137 PLNSDPSTIS-TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 195
PL D T+S + L + D AE R + + GG++ + A++ SAL+A+L A G S
Sbjct: 138 PLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFS 197
Query: 196 FMC 198
+
Sbjct: 198 HLV 200
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 137 PLNSDPSTIS-TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 195
PL D T+S + L + D AE R + + GG++ + A++ SAL+A+L A G S
Sbjct: 138 PLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFS 197
Query: 196 FMC 198
+
Sbjct: 198 HLV 200
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 137 PLNSDPSTIS-TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 195
PL D T+S + L + D AE R + + GG++ + A++ SAL+A+L A G S
Sbjct: 138 PLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFS 197
Query: 196 FMC 198
+
Sbjct: 198 HLV 200
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 137 PLNSDPSTIS-TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 195
PL D T+S + L + D AE R + + GG++ + A++ SAL+A+L A G S
Sbjct: 138 PLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFS 197
Query: 196 FMC 198
+
Sbjct: 198 HLV 200
>pdb|4DYK|A Chain A, Crystal Structure Of An Adenosine Deaminase From
Pseudomonas Aeruginosa Pao1 (Target Nysgrc-200449) With
Bound Zn
pdb|4DYK|B Chain B, Crystal Structure Of An Adenosine Deaminase From
Pseudomonas Aeruginosa Pao1 (Target Nysgrc-200449) With
Bound Zn
Length = 451
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 53 VTPKGVI--SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106
V P GV+ A+ I++G I + E R+ T ++ + ++ PGL++ H H
Sbjct: 20 VEPAGVVLRDHALGIRDGQIALVAPREQAMRHGAT-EIRELPGMLLAPGLVNAHGH 74
>pdb|2VR2|A Chain A, Human Dihydropyrimidinase
Length = 541
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 68/344 (19%), Positives = 125/344 (36%), Gaps = 40/344 (11%)
Query: 87 QVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPST 144
+V+D +++PG ID H H+ P G + F +ID + +
Sbjct: 72 RVLDAAGKLVLPGGIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIIDFAIPQKGGS 131
Query: 145 I--STETLKLKVD---AAEKRIYVDVGFWGGLVPENAYNASALEALL-NAGVLGLKSFMC 198
+ + ET + D + ++V V +W V E ++ L+ + GV K FM
Sbjct: 132 LIEAFETWRSWADPKVCCDYSLHVAVTWWSDQVKEE------MKILVQDKGVNSFKMFM- 184
Query: 199 PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYS 254
D M + E S VHAE + +G+++ + L
Sbjct: 185 --AYKDLYMVTDLELYEAFSRCKEIGAIAQVHAENGDLIAEGAKKML-----ALGITGPE 237
Query: 255 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDS 314
+ RP + E A +T+A A L+IVH +A+ +G
Sbjct: 238 GHELCRPEAVEAEATLRAITIAS-------AVNCPLYIVHVMSKSAAKVIA-DARRDGKV 289
Query: 315 ITVETCPHYLAFSAEEIPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDH 369
+ E L + + PP+R D + + L L + + +D+
Sbjct: 290 VYGEPIAASLGTDGTHYWNKEWHHAAHHVMGPPLRPDPSTPDFLMNLLANDDLTTTGTDN 349
Query: 370 SPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNME 413
K L + +F K G++ ++ S+ + +G+ G M+
Sbjct: 350 CTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIW-EKGVHSGKMD 392
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,651,925
Number of Sequences: 62578
Number of extensions: 467693
Number of successful extensions: 1112
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1053
Number of HSP's gapped (non-prelim): 54
length of query: 413
length of database: 14,973,337
effective HSP length: 101
effective length of query: 312
effective length of database: 8,652,959
effective search space: 2699723208
effective search space used: 2699723208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)