Query 015110
Match_columns 413
No_of_seqs 348 out of 2511
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 03:12:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02795 allantoinase 100.0 5.4E-65 1.2E-69 511.9 41.5 406 1-410 1-407 (505)
2 COG0044 PyrC Dihydroorotase an 100.0 1.5E-64 3.3E-69 493.1 35.8 343 43-413 1-343 (430)
3 PRK07369 dihydroorotase; Provi 100.0 2.7E-63 5.8E-68 488.9 35.8 345 42-413 1-348 (418)
4 PRK07627 dihydroorotase; Provi 100.0 1.3E-60 2.8E-65 471.2 36.1 334 44-403 2-338 (425)
5 PRK09059 dihydroorotase; Valid 100.0 3.1E-60 6.7E-65 469.1 35.5 347 42-413 2-351 (429)
6 PRK08417 dihydroorotase; Provi 100.0 6.6E-60 1.4E-64 462.1 32.2 313 63-412 1-315 (386)
7 PRK13404 dihydropyrimidinase; 100.0 2.1E-58 4.6E-63 462.3 37.7 350 43-412 4-365 (477)
8 PRK06189 allantoinase; Provisi 100.0 5.4E-58 1.2E-62 458.0 39.1 352 43-413 3-354 (451)
9 PRK08044 allantoinase; Provisi 100.0 1.5E-56 3.2E-61 446.1 38.0 350 43-413 3-356 (449)
10 TIGR03178 allantoinase allanto 100.0 2.6E-56 5.7E-61 445.4 38.0 351 44-413 1-351 (443)
11 cd01315 L-HYD_ALN L-Hydantoina 100.0 1.6E-55 3.6E-60 441.2 38.7 353 44-412 1-353 (447)
12 PRK02382 dihydroorotase; Provi 100.0 1.4E-55 3.1E-60 439.6 35.3 341 42-413 1-342 (443)
13 PRK01211 dihydroorotase; Provi 100.0 2.6E-55 5.6E-60 429.3 31.6 312 47-413 3-314 (409)
14 PLN02942 dihydropyrimidinase 100.0 1.8E-54 3.9E-59 435.6 36.8 352 42-412 4-362 (486)
15 PRK09060 dihydroorotase; Valid 100.0 2.2E-54 4.8E-59 430.3 37.1 339 43-413 5-345 (444)
16 KOG2584 Dihydroorotase and rel 100.0 2.4E-55 5.1E-60 405.9 27.0 356 41-413 12-375 (522)
17 TIGR00857 pyrC_multi dihydroor 100.0 5.1E-54 1.1E-58 424.5 34.7 326 58-412 3-331 (411)
18 cd01314 D-HYD D-hydantoinases 100.0 7.8E-54 1.7E-58 429.1 36.3 352 45-413 1-357 (447)
19 PRK08323 phenylhydantoinase; V 100.0 1.3E-53 2.7E-58 429.2 37.8 348 44-412 2-356 (459)
20 PRK07575 dihydroorotase; Provi 100.0 1.6E-53 3.4E-58 423.7 37.2 340 42-412 2-342 (438)
21 TIGR02033 D-hydantoinase D-hyd 100.0 8.8E-53 1.9E-57 422.7 36.7 351 45-412 1-358 (454)
22 PRK09357 pyrC dihydroorotase; 100.0 2.7E-52 5.9E-57 414.9 36.1 341 44-412 2-344 (423)
23 PRK04250 dihydroorotase; Provi 100.0 3.7E-52 8.1E-57 407.3 31.3 306 48-413 2-308 (398)
24 PRK09236 dihydroorotase; Revie 100.0 2.5E-51 5.5E-56 409.2 37.1 347 42-412 1-348 (444)
25 cd01318 DHOase_IIb Dihydroorot 100.0 4.8E-50 1E-54 388.2 29.2 287 93-412 1-287 (361)
26 PRK00369 pyrC dihydroorotase; 100.0 9.6E-50 2.1E-54 388.0 29.4 285 60-412 13-298 (392)
27 cd01317 DHOase_IIa Dihydroorot 100.0 1.3E-48 2.9E-53 381.7 30.6 303 86-412 2-305 (374)
28 cd01302 Cyclic_amidohydrolases 100.0 2.5E-48 5.4E-53 373.9 27.8 265 94-410 1-266 (337)
29 cd01316 CAD_DHOase The eukaryo 100.0 2.9E-46 6.4E-51 357.9 27.3 261 94-413 2-262 (344)
30 cd01294 DHOase Dihydroorotase 100.0 5.8E-43 1.3E-47 337.0 25.5 271 96-412 2-278 (335)
31 PLN02599 dihydroorotase 100.0 1.6E-39 3.4E-44 311.7 24.3 262 95-402 23-296 (364)
32 PRK09061 D-glutamate deacylase 100.0 4.1E-39 8.8E-44 324.6 28.3 305 43-409 19-412 (509)
33 TIGR00856 pyrC_dimer dihydroor 100.0 5.2E-39 1.1E-43 307.8 24.9 265 95-403 2-275 (341)
34 PRK05451 dihydroorotase; Provi 100.0 6E-37 1.3E-41 295.0 25.3 262 95-402 5-277 (345)
35 cd01297 D-aminoacylase D-amino 100.0 7.2E-36 1.6E-40 295.7 25.1 259 44-373 1-311 (415)
36 PRK15446 phosphonate metabolis 100.0 2.8E-31 6.2E-36 259.2 22.3 289 42-374 1-311 (383)
37 TIGR02318 phosphono_phnM phosp 100.0 2.9E-31 6.2E-36 258.3 21.7 284 46-373 1-305 (376)
38 cd01308 Isoaspartyl-dipeptidas 99.9 1.2E-22 2.5E-27 200.1 26.7 292 45-412 2-322 (387)
39 PRK10657 isoaspartyl dipeptida 99.9 9.3E-23 2E-27 200.9 25.2 293 44-402 2-315 (388)
40 PRK12394 putative metallo-depe 99.9 1.6E-22 3.5E-27 198.2 24.8 255 43-373 3-280 (379)
41 PRK13308 ureC urease subunit a 99.9 2.8E-22 6E-27 198.2 24.9 174 42-235 67-252 (569)
42 PRK13985 ureB urease subunit b 99.9 3.4E-22 7.3E-27 196.8 24.9 214 42-313 64-294 (568)
43 PRK13206 ureC urease subunit a 99.9 2.6E-22 5.6E-27 199.3 23.3 214 42-313 70-300 (573)
44 PRK13207 ureC urease subunit a 99.9 5.7E-22 1.2E-26 197.3 24.8 213 43-313 67-294 (568)
45 PRK07228 N-ethylammeline chlor 99.9 6.1E-23 1.3E-27 205.7 18.1 269 43-373 1-311 (445)
46 cd00375 Urease_alpha Urease al 99.9 8.1E-22 1.8E-26 194.8 24.8 213 43-313 65-294 (567)
47 PRK13309 ureC urease subunit a 99.9 1.7E-21 3.6E-26 194.5 24.6 214 42-313 67-298 (572)
48 cd01298 ATZ_TRZ_like TRZ/ATZ f 99.9 4.9E-21 1.1E-25 190.1 22.8 265 45-371 1-304 (411)
49 TIGR01792 urease_alph urease, 99.9 8.3E-21 1.8E-25 189.3 22.2 174 42-235 65-251 (567)
50 PRK06687 chlorohydrolase; Vali 99.9 3.6E-20 7.8E-25 184.2 21.6 182 45-235 2-221 (419)
51 cd01293 Bact_CD Bacterial cyto 99.9 1.3E-19 2.8E-24 179.1 25.2 270 47-370 2-309 (398)
52 PRK15493 5-methylthioadenosine 99.9 8.7E-20 1.9E-24 181.8 23.6 186 43-235 1-222 (435)
53 COG0418 PyrC Dihydroorotase [N 99.9 2.1E-19 4.5E-24 161.0 22.9 263 96-401 6-276 (344)
54 TIGR01975 isoAsp_dipep isoaspa 99.9 4.5E-19 9.8E-24 172.7 27.3 290 45-401 2-315 (389)
55 PRK07583 cytosine deaminase-li 99.8 1.3E-19 2.8E-24 180.9 23.2 269 42-370 10-333 (438)
56 PRK09045 N-ethylammeline chlor 99.8 4.7E-19 1E-23 177.3 22.8 180 42-232 6-223 (443)
57 PRK14085 imidazolonepropionase 99.8 4.7E-19 1E-23 174.0 21.6 179 43-233 1-229 (382)
58 PRK05985 cytosine deaminase; P 99.8 2.2E-18 4.7E-23 169.9 26.0 261 42-370 1-298 (391)
59 TIGR01178 ade adenine deaminas 99.8 1.4E-18 3E-23 176.2 24.3 175 44-235 1-186 (552)
60 PLN02303 urease 99.8 4.1E-19 8.8E-24 181.3 20.2 174 42-235 333-521 (837)
61 PRK08203 hydroxydechloroatrazi 99.8 1.1E-18 2.3E-23 175.2 23.1 180 45-231 4-234 (451)
62 PRK07572 cytosine deaminase; V 99.8 3.6E-18 7.8E-23 170.0 26.2 270 43-370 2-311 (426)
63 PRK07203 putative chlorohydrol 99.8 1.6E-18 3.5E-23 173.4 23.6 186 45-236 2-231 (442)
64 PRK06151 N-ethylammeline chlor 99.8 7.4E-19 1.6E-23 177.7 19.2 185 44-235 2-246 (488)
65 PRK06380 metal-dependent hydro 99.8 3.6E-18 7.7E-23 169.9 23.0 175 44-233 2-208 (418)
66 TIGR03314 Se_ssnA putative sel 99.8 3.9E-18 8.5E-23 170.3 23.2 190 45-237 1-231 (441)
67 PRK08204 hypothetical protein; 99.8 1.2E-17 2.6E-22 167.7 26.7 263 42-372 1-305 (449)
68 PRK09237 dihydroorotase; Provi 99.8 5.2E-18 1.1E-22 166.6 22.6 179 45-235 1-192 (380)
69 COG3653 N-acyl-D-aspartate/D-g 99.8 1.2E-18 2.7E-23 162.4 16.9 239 42-322 5-311 (579)
70 PRK09230 cytosine deaminase; P 99.8 3.4E-17 7.4E-22 162.5 27.7 270 43-370 4-315 (426)
71 cd01307 Met_dep_hydrolase_B Me 99.8 4.4E-18 9.6E-23 164.4 20.8 162 62-235 1-173 (338)
72 PRK12393 amidohydrolase; Provi 99.8 1.6E-17 3.4E-22 166.7 24.1 184 42-232 1-239 (457)
73 COG3964 Predicted amidohydrola 99.8 7.7E-18 1.7E-22 150.7 19.0 250 42-313 3-266 (386)
74 PRK09356 imidazolonepropionase 99.8 1.6E-17 3.5E-22 164.6 22.5 183 42-232 2-243 (406)
75 PRK08393 N-ethylammeline chlor 99.8 1.3E-17 2.9E-22 165.9 21.0 180 43-236 1-215 (424)
76 PRK07213 chlorohydrolase; Prov 99.8 1.8E-17 3.9E-22 162.2 21.5 169 45-235 2-204 (375)
77 TIGR02967 guan_deamin guanine 99.8 4.6E-17 1E-21 161.1 24.6 257 59-371 5-299 (401)
78 cd01299 Met_dep_hydrolase_A Me 99.8 4.8E-18 1E-22 164.6 15.4 142 87-234 2-183 (342)
79 PRK06038 N-ethylammeline chlor 99.8 6.6E-17 1.4E-21 161.1 22.8 178 42-234 1-213 (430)
80 KOG2902 Dihydroorotase [Nucleo 99.8 2E-17 4.3E-22 143.4 16.3 263 96-401 6-273 (344)
81 PRK09228 guanine deaminase; Pr 99.8 9.6E-17 2.1E-21 159.8 23.5 254 59-370 30-323 (433)
82 PRK06846 putative deaminase; V 99.8 8.1E-16 1.8E-20 152.4 27.8 263 44-370 5-313 (410)
83 COG1228 HutI Imidazolonepropio 99.7 9.4E-18 2E-22 163.7 12.7 65 43-110 10-76 (406)
84 cd01303 GDEase Guanine deamina 99.7 1.5E-16 3.3E-21 158.4 21.1 254 59-371 25-321 (429)
85 PRK08418 chlorohydrolase; Prov 99.7 1.3E-16 2.8E-21 157.6 19.6 181 45-238 2-218 (408)
86 TIGR03583 EF_0837 probable ami 99.7 5.3E-16 1.1E-20 151.5 23.7 177 43-235 1-189 (365)
87 COG1574 Predicted metal-depend 99.7 1.2E-16 2.6E-21 159.7 17.5 67 41-107 3-72 (535)
88 cd01296 Imidazolone-5PH Imidaz 99.7 4.4E-16 9.5E-21 152.6 20.3 164 63-233 1-215 (371)
89 COG0402 SsnA Cytosine deaminas 99.7 1.1E-15 2.3E-20 152.1 21.9 269 43-374 2-311 (421)
90 PRK10027 cryptic adenine deami 99.7 2.7E-15 5.8E-20 152.5 24.7 228 43-309 30-271 (588)
91 cd00854 NagA N-acetylglucosami 99.7 1.7E-16 3.8E-21 155.1 15.4 184 45-242 1-205 (374)
92 TIGR01224 hutI imidazoloneprop 99.7 8.5E-16 1.8E-20 150.9 20.2 51 59-110 2-52 (377)
93 COG1001 AdeC Adenine deaminase 99.7 3.2E-15 6.9E-20 146.8 19.4 235 40-313 21-270 (584)
94 cd01313 Met_dep_hydrolase_E Me 99.7 3.2E-15 7E-20 148.4 19.5 77 54-137 3-112 (418)
95 TIGR00221 nagA N-acetylglucosa 99.6 4E-15 8.6E-20 144.7 16.7 187 43-242 3-210 (380)
96 cd01312 Met_dep_hydrolase_D Me 99.6 1E-14 2.2E-19 142.8 19.2 159 68-238 1-191 (381)
97 cd01300 YtcJ_like YtcJ_like me 99.6 7E-15 1.5E-19 148.9 17.8 121 206-371 290-413 (479)
98 PF13594 Amidohydro_5: Amidohy 99.6 8.3E-16 1.8E-20 112.0 7.9 68 63-133 1-68 (68)
99 PRK09229 N-formimino-L-glutama 99.6 1.1E-14 2.4E-19 146.3 17.7 181 43-235 3-240 (456)
100 TIGR02022 hutF formiminoglutam 99.6 2.9E-14 6.2E-19 143.0 18.2 84 46-137 5-121 (455)
101 PRK11170 nagA N-acetylglucosam 99.6 2.6E-14 5.7E-19 139.3 17.1 183 45-242 2-208 (382)
102 TIGR03121 one_C_dehyd_A formyl 99.6 4.3E-13 9.3E-18 133.7 23.0 88 45-137 2-119 (556)
103 cd01304 FMDH_A Formylmethanofu 99.6 3.9E-13 8.5E-18 133.3 22.2 236 47-322 1-304 (541)
104 COG0804 UreC Urea amidohydrola 99.6 2.4E-13 5.1E-18 126.4 18.5 172 42-235 66-252 (568)
105 COG3454 Metal-dependent hydrol 99.5 4.5E-13 9.8E-18 121.7 17.6 150 45-199 1-165 (377)
106 cd01292 metallo-dependent_hydr 99.5 8.4E-13 1.8E-17 122.9 15.5 212 100-372 1-238 (275)
107 cd01295 AdeC Adenine deaminase 99.4 1.1E-11 2.4E-16 123.3 21.3 136 90-235 1-145 (422)
108 KOG3968 Atrazine chlorohydrola 99.4 1.1E-11 2.4E-16 116.8 13.8 255 60-374 27-335 (439)
109 COG1820 NagA N-acetylglucosami 99.3 6.5E-11 1.4E-15 112.1 16.5 87 45-135 2-93 (380)
110 cd01309 Met_dep_hydrolase_C Me 99.3 7.6E-11 1.6E-15 114.8 17.5 68 67-137 1-91 (359)
111 PF13147 Amidohydro_4: Amidohy 99.3 4.5E-11 9.8E-16 112.6 12.9 239 90-373 1-249 (304)
112 PF12890 DHOase: Dihydro-orota 99.2 6.5E-12 1.4E-16 99.7 4.7 140 93-298 1-140 (142)
113 PRK06886 hypothetical protein; 99.1 1.3E-08 2.9E-13 97.0 19.4 200 120-370 73-282 (329)
114 cd01305 archeal_chlorohydrolas 99.0 5.5E-09 1.2E-13 97.4 13.3 21 213-233 127-147 (263)
115 COG1229 FwdA Formylmethanofura 99.0 8.6E-09 1.9E-13 96.6 13.7 64 42-110 2-68 (575)
116 cd01306 PhnM PhnM is believed 98.9 6E-08 1.3E-12 92.3 18.2 212 97-374 1-260 (325)
117 PF01979 Amidohydro_1: Amidohy 98.5 2.1E-07 4.6E-12 89.4 5.6 43 95-137 1-50 (333)
118 cd01310 TatD_DNAse TatD like p 98.3 4.5E-05 9.7E-10 70.3 16.9 123 100-233 1-130 (251)
119 KOG3892 N-acetyl-glucosamine-6 98.1 6E-06 1.3E-10 73.9 6.0 91 45-136 14-110 (407)
120 COG0084 TatD Mg-dependent DNas 98.0 0.00036 7.8E-09 64.1 16.6 122 100-234 3-135 (256)
121 TIGR00010 hydrolase, TatD fami 98.0 0.00016 3.5E-09 66.6 13.5 119 100-233 1-130 (252)
122 PRK10812 putative DNAse; Provi 97.9 0.00048 1E-08 64.0 15.8 126 100-233 3-133 (265)
123 PRK11449 putative deoxyribonuc 97.9 0.00038 8.2E-09 64.5 14.9 123 98-233 3-136 (258)
124 cd00530 PTE Phosphotriesterase 97.9 0.00045 9.8E-09 65.3 15.5 110 209-369 134-245 (293)
125 PRK10425 DNase TatD; Provision 97.8 0.00067 1.4E-08 62.8 14.9 125 100-233 1-130 (258)
126 COG1099 Predicted metal-depend 97.7 0.0017 3.8E-08 56.9 13.8 172 100-321 2-186 (254)
127 PF01026 TatD_DNase: TatD rela 97.7 0.00074 1.6E-08 62.6 12.4 166 101-316 1-175 (255)
128 cd01311 PDC_hydrolase 2-pyrone 97.5 0.014 3.1E-07 54.3 19.0 122 99-233 1-132 (263)
129 PRK09358 adenosine deaminase; 97.3 0.032 6.9E-07 54.0 19.2 25 208-232 179-203 (340)
130 cd01320 ADA Adenosine deaminas 97.1 0.037 8.1E-07 53.1 17.7 25 208-232 170-194 (325)
131 PRK09875 putative hydrolase; P 97.1 0.077 1.7E-06 50.0 18.9 238 99-408 7-275 (292)
132 PF04909 Amidohydro_2: Amidohy 96.9 0.007 1.5E-07 56.1 10.1 111 175-321 83-198 (273)
133 TIGR01430 aden_deam adenosine 96.9 0.078 1.7E-06 50.9 17.3 25 208-232 169-193 (324)
134 PF00449 Urease_alpha: Urease 96.9 0.0021 4.6E-08 50.1 4.9 36 42-77 65-100 (121)
135 PF02126 PTE: Phosphotriestera 95.9 0.12 2.5E-06 49.1 11.7 224 99-371 7-260 (308)
136 COG2159 Predicted metal-depend 95.9 1.6 3.4E-05 41.3 19.2 143 178-377 114-261 (293)
137 PF07969 Amidohydro_3: Amidohy 95.3 0.23 4.9E-06 49.1 12.1 102 122-234 136-248 (404)
138 COG1735 Php Predicted metal-de 95.2 1.2 2.6E-05 41.5 15.3 73 210-319 151-224 (316)
139 PRK13352 thiamine biosynthesis 93.8 1.9 4.1E-05 42.0 13.5 196 91-328 35-274 (431)
140 COG1831 Predicted metal-depend 93.8 5.4 0.00012 36.5 17.2 27 209-235 143-169 (285)
141 TIGR00190 thiC thiamine biosyn 93.5 3.4 7.4E-05 40.1 14.7 168 120-328 81-271 (423)
142 PF07969 Amidohydro_3: Amidohy 91.2 0.081 1.8E-06 52.3 0.9 20 351-370 316-335 (404)
143 PTZ00124 adenosine deaminase; 90.9 8.1 0.00018 37.7 14.3 22 211-232 206-227 (362)
144 cd00443 ADA_AMPD Adenosine/AMP 90.5 9.6 0.00021 36.2 14.3 24 209-232 151-175 (305)
145 cd01321 ADGF Adenosine deamina 90.2 1.2 2.6E-05 43.2 7.9 110 209-372 177-289 (345)
146 cd01308 Isoaspartyl-dipeptidas 89.8 16 0.00035 35.8 15.7 63 256-327 161-227 (387)
147 PF00962 A_deaminase: Adenosin 89.2 4.2 9.1E-05 39.0 10.9 118 189-370 164-282 (331)
148 PRK01060 endonuclease IV; Prov 89.1 15 0.00033 34.1 14.4 118 178-322 14-149 (281)
149 COG0422 ThiC Thiamine biosynth 89.0 15 0.00033 35.4 13.7 168 120-328 82-272 (432)
150 COG0826 Collagenase and relate 88.5 7 0.00015 37.8 11.6 52 177-228 14-66 (347)
151 COG5016 Pyruvate/oxaloacetate 87.7 8.5 0.00018 37.5 11.3 107 118-236 100-211 (472)
152 COG3618 Predicted metal-depend 87.7 20 0.00044 33.2 13.5 130 97-234 6-147 (279)
153 smart00518 AP2Ec AP endonuclea 87.3 14 0.00031 34.1 13.0 116 180-322 14-143 (273)
154 TIGR01496 DHPS dihydropteroate 87.0 7.5 0.00016 35.9 10.6 68 176-243 23-94 (257)
155 PRK14042 pyruvate carboxylase 85.9 9.6 0.00021 39.7 11.6 107 119-236 99-209 (596)
156 PRK12330 oxaloacetate decarbox 85.1 10 0.00022 38.5 11.1 107 119-236 100-212 (499)
157 COG4464 CapC Capsular polysacc 84.7 1.4 3E-05 38.9 4.1 38 100-137 1-41 (254)
158 cd00019 AP2Ec AP endonuclease 83.6 32 0.00069 31.9 13.3 52 180-231 14-66 (279)
159 COG1816 Add Adenosine deaminas 82.0 8.1 0.00018 37.2 8.6 108 208-373 182-290 (345)
160 PRK09284 thiamine biosynthesis 81.6 58 0.0013 33.2 14.4 165 120-327 236-423 (607)
161 PLN02444 HMP-P synthase 80.5 68 0.0015 32.9 14.4 165 120-327 241-428 (642)
162 PF01964 ThiC: ThiC family; I 78.7 6.4 0.00014 38.3 6.6 54 267-328 202-270 (420)
163 TIGR01431 adm_rel adenosine de 78.2 13 0.00028 37.8 9.0 65 291-372 351-415 (479)
164 PRK12581 oxaloacetate decarbox 78.0 33 0.00072 34.6 11.7 105 119-236 108-218 (468)
165 cd00951 KDGDH 5-dehydro-4-deox 76.7 63 0.0014 30.3 12.9 109 114-231 19-132 (289)
166 PRK14040 oxaloacetate decarbox 76.1 46 0.00099 34.8 12.6 105 119-236 100-210 (593)
167 cd07944 DRE_TIM_HOA_like 4-hyd 75.6 63 0.0014 30.0 12.3 104 121-235 87-194 (266)
168 TIGR00587 nfo apurinic endonuc 75.0 71 0.0015 29.6 12.7 117 179-322 14-147 (274)
169 cd07943 DRE_TIM_HOA 4-hydroxy- 74.1 63 0.0014 29.8 12.0 105 120-235 89-196 (263)
170 KOG1097 Adenine deaminase/aden 73.8 37 0.00081 33.2 10.4 106 209-370 225-330 (399)
171 PRK08195 4-hyroxy-2-oxovalerat 73.7 61 0.0013 31.2 12.1 105 120-235 92-200 (337)
172 PTZ00372 endonuclease 4-like p 72.2 1.1E+02 0.0023 30.5 16.2 132 161-322 129-278 (413)
173 TIGR01235 pyruv_carbox pyruvat 70.6 99 0.0021 35.2 14.3 107 119-236 628-744 (1143)
174 PRK12331 oxaloacetate decarbox 70.6 52 0.0011 33.1 11.1 107 119-236 99-209 (448)
175 PRK14041 oxaloacetate decarbox 70.0 83 0.0018 31.9 12.4 107 119-236 98-208 (467)
176 TIGR01108 oadA oxaloacetate de 69.9 78 0.0017 33.1 12.5 107 119-236 94-204 (582)
177 TIGR03217 4OH_2_O_val_ald 4-hy 67.9 1E+02 0.0022 29.7 12.2 103 121-235 92-199 (333)
178 PRK09282 pyruvate carboxylase 66.7 88 0.0019 32.8 12.2 107 119-236 99-209 (592)
179 PRK15108 biotin synthase; Prov 64.4 1E+02 0.0023 29.7 11.6 110 114-230 77-190 (345)
180 cd07937 DRE_TIM_PC_TC_5S Pyruv 63.3 75 0.0016 29.6 10.1 106 119-235 94-203 (275)
181 PRK03620 5-dehydro-4-deoxygluc 63.3 1.4E+02 0.0029 28.3 12.0 108 115-231 27-139 (303)
182 PF10566 Glyco_hydro_97: Glyco 63.2 9.6 0.00021 35.5 3.9 112 116-232 32-158 (273)
183 TIGR03249 KdgD 5-dehydro-4-deo 62.7 1.3E+02 0.0027 28.4 11.6 109 114-231 24-137 (296)
184 PLN02417 dihydrodipicolinate s 62.2 1.3E+02 0.0029 28.0 11.6 110 115-230 21-131 (280)
185 PRK11858 aksA trans-homoaconit 61.8 91 0.002 30.6 10.8 52 179-236 148-200 (378)
186 PF02679 ComA: (2R)-phospho-3- 61.7 33 0.00071 31.4 7.0 98 188-322 36-136 (244)
187 PF02811 PHP: PHP domain; Int 60.9 11 0.00024 31.9 3.8 36 101-136 1-36 (175)
188 PRK08392 hypothetical protein; 60.8 1.2E+02 0.0026 26.9 16.6 177 101-322 1-184 (215)
189 cd00739 DHPS DHPS subgroup of 60.6 1.4E+02 0.003 27.5 11.3 67 177-243 25-95 (257)
190 PRK03906 mannonate dehydratase 60.0 59 0.0013 32.0 9.0 159 210-408 213-374 (385)
191 cd00952 CHBPH_aldolase Trans-o 59.8 55 0.0012 31.1 8.7 51 179-232 32-85 (309)
192 TIGR00284 dihydropteroate synt 59.3 1.7E+02 0.0037 29.9 12.3 114 179-318 168-286 (499)
193 PF00701 DHDPS: Dihydrodipicol 59.0 70 0.0015 29.9 9.2 51 179-232 25-78 (289)
194 TIGR03581 EF_0839 conserved hy 58.4 68 0.0015 28.6 8.0 74 180-297 139-212 (236)
195 PF00834 Ribul_P_3_epim: Ribul 58.2 1.3E+02 0.0029 26.5 10.8 98 179-322 15-115 (201)
196 cd00408 DHDPS-like Dihydrodipi 57.9 1.6E+02 0.0034 27.3 11.6 111 114-230 16-129 (281)
197 cd00950 DHDPS Dihydrodipicolin 57.8 1.5E+02 0.0033 27.5 11.2 110 115-230 20-132 (284)
198 cd00953 KDG_aldolase KDG (2-ke 57.8 93 0.002 29.0 9.7 50 179-231 23-72 (279)
199 cd00951 KDGDH 5-dehydro-4-deox 57.4 1E+02 0.0022 29.0 9.9 51 179-232 24-77 (289)
200 TIGR03849 arch_ComA phosphosul 57.2 1.2E+02 0.0026 27.6 9.7 98 188-322 23-123 (237)
201 cd07939 DRE_TIM_NifV Streptomy 56.8 1.4E+02 0.003 27.5 10.6 51 179-235 142-193 (259)
202 TIGR00674 dapA dihydrodipicoli 56.3 1E+02 0.0022 28.8 9.8 51 179-232 22-75 (285)
203 PRK08444 hypothetical protein; 55.8 1.3E+02 0.0028 29.2 10.5 55 177-236 84-138 (353)
204 PRK07535 methyltetrahydrofolat 54.1 90 0.002 28.9 8.8 119 179-318 28-160 (261)
205 TIGR00683 nanA N-acetylneurami 54.1 89 0.0019 29.3 9.0 51 179-232 24-78 (290)
206 cd02742 GH20_hexosaminidase Be 53.8 28 0.00062 32.9 5.6 85 207-324 12-98 (303)
207 PRK08444 hypothetical protein; 53.7 75 0.0016 30.9 8.5 117 114-236 81-219 (353)
208 TIGR02660 nifV_homocitr homoci 53.2 1.5E+02 0.0032 29.0 10.6 50 180-235 146-196 (365)
209 PF07071 DUF1341: Protein of u 52.9 59 0.0013 28.7 6.7 74 180-297 139-212 (218)
210 TIGR00126 deoC deoxyribose-pho 52.7 1.7E+02 0.0037 26.1 10.7 106 113-232 15-125 (211)
211 PRK03170 dihydrodipicolinate s 52.6 2E+02 0.0043 26.9 11.2 107 115-230 21-133 (292)
212 cd00952 CHBPH_aldolase Trans-o 52.2 1.8E+02 0.0038 27.6 10.7 110 115-230 28-141 (309)
213 cd00953 KDG_aldolase KDG (2-ke 51.8 2E+02 0.0044 26.7 12.8 108 114-230 18-127 (279)
214 PRK15452 putative protease; Pr 51.5 2.7E+02 0.0058 28.0 13.3 53 178-230 12-65 (443)
215 PLN02417 dihydrodipicolinate s 51.5 83 0.0018 29.4 8.3 52 179-233 25-79 (280)
216 COG0036 Rpe Pentose-5-phosphat 51.3 1.8E+02 0.004 26.1 11.9 97 179-322 19-119 (220)
217 cd07948 DRE_TIM_HCS Saccharomy 50.8 2.1E+02 0.0045 26.5 12.3 51 179-235 144-195 (262)
218 PRK12999 pyruvate carboxylase; 50.3 1.6E+02 0.0034 33.7 11.3 105 121-236 632-746 (1146)
219 cd00959 DeoC 2-deoxyribose-5-p 50.2 41 0.0009 29.7 5.8 103 114-229 15-121 (203)
220 PRK04147 N-acetylneuraminate l 49.5 2.3E+02 0.0049 26.6 11.6 109 114-231 22-137 (293)
221 COG0269 SgbH 3-hexulose-6-phos 49.5 1.9E+02 0.0042 25.8 11.1 43 181-232 72-114 (217)
222 COG0329 DapA Dihydrodipicolina 48.6 1.3E+02 0.0029 28.4 9.2 40 180-222 29-68 (299)
223 PF00682 HMGL-like: HMGL-like 48.0 1.9E+02 0.0042 25.9 10.0 51 179-235 140-192 (237)
224 PRK07998 gatY putative fructos 47.9 2.4E+02 0.0052 26.4 11.1 110 120-233 88-208 (283)
225 TIGR02090 LEU1_arch isopropylm 47.2 2.3E+02 0.005 27.6 10.9 51 179-235 144-195 (363)
226 PRK06015 keto-hydroxyglutarate 47.1 1.2E+02 0.0026 26.9 8.0 95 116-237 16-110 (201)
227 TIGR00674 dapA dihydrodipicoli 47.0 2.4E+02 0.0053 26.2 11.4 107 115-230 18-130 (285)
228 cd00408 DHDPS-like Dihydrodipi 46.8 1.9E+02 0.0041 26.8 10.0 51 179-232 21-74 (281)
229 PRK03170 dihydrodipicolinate s 46.4 1.8E+02 0.004 27.1 9.8 49 180-231 26-77 (292)
230 PF00701 DHDPS: Dihydrodipicol 46.1 2.1E+02 0.0046 26.6 10.2 107 115-231 21-134 (289)
231 PRK09856 fructoselysine 3-epim 45.9 2.4E+02 0.0052 25.8 13.0 119 178-319 15-149 (275)
232 PRK06552 keto-hydroxyglutarate 45.7 1.2E+02 0.0025 27.2 7.8 100 115-238 24-123 (213)
233 TIGR00683 nanA N-acetylneurami 45.3 2.6E+02 0.0057 26.2 11.9 111 115-230 20-134 (290)
234 cd07940 DRE_TIM_IPMS 2-isoprop 45.3 2.1E+02 0.0046 26.4 9.9 51 179-235 146-200 (268)
235 PF01261 AP_endonuc_2: Xylose 45.2 1.1E+02 0.0024 26.3 7.8 116 183-324 2-137 (213)
236 TIGR01949 AroFGH_arch predicte 44.7 70 0.0015 29.4 6.6 107 114-232 34-144 (258)
237 PRK07114 keto-hydroxyglutarate 43.8 1.6E+02 0.0035 26.5 8.4 98 116-237 27-125 (222)
238 PRK15446 phosphonate metabolis 43.6 29 0.00064 34.1 4.1 35 207-241 210-245 (383)
239 COG1168 MalY Bifunctional PLP- 43.6 77 0.0017 30.9 6.6 51 178-229 146-196 (388)
240 cd06562 GH20_HexA_HexB-like Be 43.5 53 0.0011 31.8 5.7 81 207-324 14-96 (348)
241 PRK07226 fructose-bisphosphate 43.4 1.2E+02 0.0026 28.1 7.9 106 114-231 37-146 (267)
242 PRK13753 dihydropteroate synth 42.8 2.9E+02 0.0063 25.9 10.2 67 177-243 26-95 (279)
243 PRK09195 gatY tagatose-bisphos 42.1 3E+02 0.0065 25.9 11.7 110 119-232 87-210 (284)
244 TIGR01182 eda Entner-Doudoroff 41.9 1.6E+02 0.0034 26.2 8.0 96 115-237 19-114 (204)
245 PRK07807 inosine 5-monophospha 41.7 2.1E+02 0.0046 29.1 9.9 102 118-230 228-336 (479)
246 PRK09250 fructose-bisphosphate 41.7 35 0.00076 32.8 4.0 50 180-231 150-199 (348)
247 cd00950 DHDPS Dihydrodipicolin 41.5 2.2E+02 0.0049 26.4 9.6 25 207-231 49-76 (284)
248 KOG4549 Magnesium-dependent ph 40.8 1.9E+02 0.0041 23.6 7.3 66 85-157 6-82 (144)
249 CHL00200 trpA tryptophan synth 40.7 3E+02 0.0065 25.5 10.1 41 180-230 110-150 (263)
250 PLN02623 pyruvate kinase 40.6 4.5E+02 0.0097 27.5 15.1 149 61-231 227-383 (581)
251 cd06568 GH20_SpHex_like A subg 40.0 39 0.00084 32.5 4.2 86 207-324 14-101 (329)
252 PLN02591 tryptophan synthase 39.7 1.8E+02 0.0038 26.8 8.2 124 177-321 17-140 (250)
253 COG0191 Fba Fructose/tagatose 38.7 2.6E+02 0.0056 26.2 9.0 25 208-232 26-50 (286)
254 cd00954 NAL N-Acetylneuraminic 38.1 2E+02 0.0043 26.9 8.6 52 179-233 24-79 (288)
255 PF01791 DeoC: DeoC/LacD famil 37.9 52 0.0011 29.8 4.5 105 117-232 20-133 (236)
256 PRK12738 kbaY tagatose-bisphos 37.9 3.5E+02 0.0076 25.4 12.4 110 119-232 87-210 (286)
257 cd06563 GH20_chitobiase-like T 37.8 79 0.0017 30.7 6.0 95 207-324 14-112 (357)
258 PRK08609 hypothetical protein; 37.4 5E+02 0.011 27.1 18.1 40 96-137 324-370 (570)
259 PRK06256 biotin synthase; Vali 37.3 3E+02 0.0066 26.2 10.0 111 115-230 93-206 (336)
260 TIGR03551 F420_cofH 7,8-dideme 37.3 3.1E+02 0.0067 26.4 10.0 50 178-232 75-124 (343)
261 PRK09140 2-dehydro-3-deoxy-6-p 37.2 2.2E+02 0.0048 25.2 8.3 98 115-238 21-118 (206)
262 PRK12737 gatY tagatose-bisphos 36.8 3.6E+02 0.0079 25.3 12.2 109 120-232 88-210 (284)
263 PRK09234 fbiC FO synthase; Rev 36.6 2.4E+02 0.0052 31.0 9.8 51 179-234 563-613 (843)
264 cd00958 DhnA Class I fructose- 36.6 1.7E+02 0.0038 26.2 7.8 105 114-230 19-128 (235)
265 cd07938 DRE_TIM_HMGL 3-hydroxy 35.9 1.1E+02 0.0025 28.4 6.5 51 179-235 152-204 (274)
266 PLN02321 2-isopropylmalate syn 35.6 2.4E+02 0.0052 29.8 9.3 51 179-235 243-298 (632)
267 COG1456 CdhE CO dehydrogenase/ 35.6 2.9E+02 0.0063 26.8 8.9 87 209-314 144-232 (467)
268 cd07945 DRE_TIM_CMS Leptospira 35.5 1.3E+02 0.0027 28.2 6.8 51 179-235 150-202 (280)
269 PF01116 F_bP_aldolase: Fructo 35.4 3E+02 0.0065 25.9 9.2 67 300-374 115-185 (287)
270 COG0800 Eda 2-keto-3-deoxy-6-p 35.3 1.4E+02 0.003 26.7 6.4 94 116-236 25-118 (211)
271 COG0821 gcpE 1-hydroxy-2-methy 35.2 4.2E+02 0.009 25.5 16.1 95 121-236 41-135 (361)
272 PRK08227 autoinducer 2 aldolas 35.2 49 0.0011 30.6 3.9 48 180-229 98-145 (264)
273 smart00481 POLIIIAc DNA polyme 34.9 56 0.0012 22.8 3.4 34 102-135 1-34 (67)
274 TIGR03249 KdgD 5-dehydro-4-deo 34.9 3.9E+02 0.0084 25.1 12.0 51 179-232 29-82 (296)
275 PRK08005 epimerase; Validated 34.8 3.3E+02 0.0072 24.3 12.2 98 179-322 16-116 (210)
276 TIGR02313 HpaI-NOT-DapA 2,4-di 34.7 3.9E+02 0.0085 25.1 11.4 106 115-230 20-133 (294)
277 PLN03228 methylthioalkylmalate 34.6 2.4E+02 0.0051 29.0 8.9 52 179-236 242-298 (503)
278 PRK08123 histidinol-phosphatas 34.2 50 0.0011 30.7 3.8 36 100-135 3-38 (270)
279 TIGR00612 ispG_gcpE 1-hydroxy- 34.1 4.4E+02 0.0094 25.4 17.8 165 120-329 38-202 (346)
280 COG1533 SplB DNA repair photol 34.0 4.1E+02 0.0089 25.1 13.7 24 299-322 169-192 (297)
281 KOG2550 IMP dehydrogenase/GMP 33.7 4E+02 0.0087 26.4 9.7 51 178-230 302-360 (503)
282 PLN02389 biotin synthase 33.6 4.7E+02 0.01 25.7 12.2 110 115-230 118-232 (379)
283 PRK04147 N-acetylneuraminate l 33.6 2.1E+02 0.0046 26.8 8.1 51 179-232 27-81 (293)
284 PRK05826 pyruvate kinase; Prov 33.4 5.3E+02 0.011 26.2 14.3 100 120-230 177-278 (465)
285 cd00423 Pterin_binding Pterin 33.4 3.8E+02 0.0083 24.5 13.3 67 177-243 25-95 (258)
286 PRK05096 guanosine 5'-monophos 33.4 1.2E+02 0.0026 29.2 6.1 53 178-230 161-219 (346)
287 PRK07360 FO synthase subunit 2 33.3 3.7E+02 0.008 26.2 9.9 121 114-236 92-231 (371)
288 cd00954 NAL N-Acetylneuraminic 33.3 4E+02 0.0088 24.8 12.3 111 115-230 20-134 (288)
289 COG1060 ThiH Thiamine biosynth 33.2 4.8E+02 0.01 25.6 11.2 120 114-236 91-229 (370)
290 KOG3020 TatD-related DNase [Re 32.8 4.3E+02 0.0094 25.0 11.7 136 90-234 8-158 (296)
291 CHL00200 trpA tryptophan synth 32.6 3.3E+02 0.0072 25.2 8.9 126 176-322 29-154 (263)
292 cd00537 MTHFR Methylenetetrahy 32.2 4.1E+02 0.0088 24.5 10.3 106 116-230 73-192 (274)
293 PRK09240 thiH thiamine biosynt 32.1 2.8E+02 0.0061 27.1 8.8 106 114-226 105-217 (371)
294 PRK05692 hydroxymethylglutaryl 32.0 1.4E+02 0.003 28.1 6.5 51 179-235 158-210 (287)
295 TIGR01305 GMP_reduct_1 guanosi 31.6 1.3E+02 0.0028 28.9 6.1 53 178-230 160-218 (343)
296 PLN02591 tryptophan synthase 31.4 4.2E+02 0.009 24.4 10.2 41 180-230 97-137 (250)
297 PF01081 Aldolase: KDPG and KH 31.3 3.7E+02 0.008 23.7 11.5 95 115-236 19-113 (196)
298 TIGR02351 thiH thiazole biosyn 31.2 2.8E+02 0.0061 27.0 8.7 108 114-229 104-220 (366)
299 TIGR00695 uxuA mannonate dehyd 31.1 5.3E+02 0.012 25.5 10.6 157 210-408 213-384 (394)
300 cd08205 RuBisCO_IV_RLP Ribulos 31.1 2.8E+02 0.0061 27.1 8.6 108 116-234 146-257 (367)
301 cd07941 DRE_TIM_LeuA3 Desulfob 31.0 4.3E+02 0.0094 24.4 12.5 51 179-235 154-206 (273)
302 PRK05926 hypothetical protein; 31.0 2.9E+02 0.0064 27.0 8.7 107 114-229 100-225 (370)
303 PRK11613 folP dihydropteroate 30.8 4.5E+02 0.0098 24.6 12.7 67 177-243 39-109 (282)
304 TIGR03699 mena_SCO4550 menaqui 30.8 3E+02 0.0066 26.3 8.8 51 178-233 77-127 (340)
305 cd06569 GH20_Sm-chitobiase-lik 30.7 1.2E+02 0.0026 30.6 6.1 29 207-235 18-47 (445)
306 PRK05927 hypothetical protein; 30.7 4.5E+02 0.0097 25.5 9.9 55 178-237 81-135 (350)
307 PF14871 GHL6: Hypothetical gl 30.5 1.6E+02 0.0036 24.0 5.9 26 206-231 39-64 (132)
308 PF03932 CutC: CutC family; I 30.5 1.4E+02 0.0029 26.5 5.7 104 120-231 11-121 (201)
309 PRK08508 biotin synthase; Prov 30.4 4.5E+02 0.0097 24.4 10.2 113 114-230 41-156 (279)
310 COG0413 PanB Ketopantoate hydr 30.2 1.3E+02 0.0028 27.7 5.5 44 176-231 93-137 (268)
311 PTZ00300 pyruvate kinase; Prov 30.1 5.9E+02 0.013 25.7 16.2 100 121-232 152-253 (454)
312 PF02219 MTHFR: Methylenetetra 29.7 4.7E+02 0.01 24.4 10.7 100 116-225 85-199 (287)
313 TIGR00423 radical SAM domain p 29.6 4.8E+02 0.01 24.6 10.3 40 270-312 148-187 (309)
314 COG2089 SpsE Sialic acid synth 29.3 4.6E+02 0.0099 25.2 9.1 27 207-233 156-184 (347)
315 PRK09490 metH B12-dependent me 29.3 9.5E+02 0.021 27.8 14.6 60 179-243 387-450 (1229)
316 COG1830 FbaB DhnA-type fructos 29.2 1E+02 0.0022 28.4 4.8 51 179-231 100-150 (265)
317 PRK09248 putative hydrolase; V 28.8 72 0.0016 29.0 3.9 36 100-136 4-39 (246)
318 PRK12858 tagatose 1,6-diphosph 28.8 82 0.0018 30.4 4.4 48 182-230 112-162 (340)
319 PRK07360 FO synthase subunit 2 28.3 5.3E+02 0.011 25.2 10.0 49 178-231 96-145 (371)
320 cd03174 DRE_TIM_metallolyase D 28.1 4.5E+02 0.0098 23.7 11.4 50 180-235 150-201 (265)
321 PRK06247 pyruvate kinase; Prov 28.0 6.6E+02 0.014 25.6 14.0 94 122-232 179-276 (476)
322 TIGR02313 HpaI-NOT-DapA 2,4-di 27.7 3.7E+02 0.0081 25.2 8.6 51 179-232 24-77 (294)
323 TIGR01858 tag_bisphos_ald clas 27.7 5.2E+02 0.011 24.3 12.1 110 119-232 85-208 (282)
324 PRK06806 fructose-bisphosphate 27.6 5.1E+02 0.011 24.2 12.2 51 178-231 154-207 (281)
325 COG4939 Major membrane immunog 27.6 64 0.0014 26.0 2.7 21 54-74 42-63 (147)
326 PF02548 Pantoate_transf: Keto 27.2 1.4E+02 0.0031 27.5 5.4 46 174-231 92-138 (261)
327 COG0159 TrpA Tryptophan syntha 27.0 5.2E+02 0.011 24.0 11.6 27 174-200 29-55 (265)
328 PRK00366 ispG 4-hydroxy-3-meth 26.9 5.9E+02 0.013 24.7 18.7 165 120-329 46-211 (360)
329 PRK15408 autoinducer 2-binding 26.8 4E+02 0.0086 25.5 8.8 47 177-233 68-114 (336)
330 TIGR03700 mena_SCO4494 putativ 26.8 4.6E+02 0.0099 25.3 9.3 115 114-230 80-207 (351)
331 COG1038 PycA Pyruvate carboxyl 26.7 5.8E+02 0.013 27.9 10.1 49 180-236 698-749 (1149)
332 PRK05588 histidinol-phosphatas 26.7 70 0.0015 29.3 3.4 33 100-133 1-33 (255)
333 PLN02858 fructose-bisphosphate 26.4 7.3E+02 0.016 29.2 12.0 112 120-232 1183-1309(1378)
334 COG0329 DapA Dihydrodipicolina 26.4 5.5E+02 0.012 24.2 11.9 108 113-230 22-136 (299)
335 TIGR00167 cbbA ketose-bisphosp 26.0 5.6E+02 0.012 24.1 11.0 111 119-233 90-215 (288)
336 PRK12344 putative alpha-isopro 25.7 1.9E+02 0.0041 29.8 6.6 52 179-236 161-213 (524)
337 PRK08610 fructose-bisphosphate 25.6 5.7E+02 0.012 24.0 12.5 110 119-232 90-211 (286)
338 cd06570 GH20_chitobiase-like_1 25.6 1E+02 0.0022 29.4 4.3 28 207-234 14-42 (311)
339 PF13407 Peripla_BP_4: Peripla 25.4 1.9E+02 0.004 25.9 6.1 45 176-230 42-86 (257)
340 PRK13209 L-xylulose 5-phosphat 25.3 4.7E+02 0.01 24.0 8.9 78 211-319 99-188 (283)
341 TIGR02318 phosphono_phnM phosp 25.0 92 0.002 30.5 4.1 34 209-242 207-241 (376)
342 PRK03620 5-dehydro-4-deoxygluc 24.8 5.9E+02 0.013 23.9 12.3 49 180-231 32-83 (303)
343 PRK12857 fructose-1,6-bisphosp 24.7 5.9E+02 0.013 23.9 12.1 109 120-232 88-210 (284)
344 TIGR03239 GarL 2-dehydro-3-deo 24.6 5.1E+02 0.011 23.7 8.6 46 182-233 26-71 (249)
345 PF03746 LamB_YcsF: LamB/YcsF 24.6 5.5E+02 0.012 23.5 8.8 29 208-236 39-67 (242)
346 PRK10558 alpha-dehydro-beta-de 24.6 4.9E+02 0.011 23.9 8.6 46 182-233 33-78 (256)
347 PRK09389 (R)-citramalate synth 24.5 6.8E+02 0.015 25.5 10.3 51 180-236 147-198 (488)
348 PTZ00413 lipoate synthase; Pro 24.2 6.8E+02 0.015 24.7 9.5 60 166-226 300-364 (398)
349 PRK13111 trpA tryptophan synth 24.0 5.7E+02 0.012 23.5 10.4 87 118-229 59-147 (258)
350 TIGR00221 nagA N-acetylglucosa 23.8 7E+02 0.015 24.5 10.4 47 182-236 83-135 (380)
351 PRK10128 2-keto-3-deoxy-L-rham 23.8 5.5E+02 0.012 23.8 8.7 46 182-233 32-77 (267)
352 PRK06852 aldolase; Validated 23.7 1E+02 0.0023 29.2 3.9 50 180-231 119-174 (304)
353 PF07894 DUF1669: Protein of u 23.7 3.7E+02 0.0079 25.2 7.4 47 178-231 135-181 (284)
354 PF00218 IGPS: Indole-3-glycer 23.6 2.5E+02 0.0054 25.9 6.3 54 180-241 122-175 (254)
355 cd00945 Aldolase_Class_I Class 23.5 4.6E+02 0.0099 22.2 9.1 102 115-231 12-120 (201)
356 cd00019 AP2Ec AP endonuclease 23.4 4.4E+02 0.0095 24.2 8.3 21 211-231 85-106 (279)
357 TIGR00973 leuA_bact 2-isopropy 23.4 6.1E+02 0.013 25.9 9.7 52 179-236 149-205 (494)
358 TIGR03326 rubisco_III ribulose 23.0 7.6E+02 0.017 24.6 10.0 108 116-233 160-273 (412)
359 cd06557 KPHMT-like Ketopantoat 22.9 6E+02 0.013 23.4 11.2 44 176-231 90-134 (254)
360 COG2268 Uncharacterized protei 22.5 2.5E+02 0.0055 28.9 6.6 24 4-27 7-30 (548)
361 cd00947 TBP_aldolase_IIB Tagat 22.5 6.4E+02 0.014 23.5 12.3 109 120-232 83-204 (276)
362 PRK07709 fructose-bisphosphate 22.2 6.6E+02 0.014 23.6 12.2 110 119-232 90-211 (285)
363 PRK09613 thiH thiamine biosynt 22.1 8.4E+02 0.018 24.8 11.2 107 114-226 116-234 (469)
364 cd01733 LSm10 The eukaryotic S 21.7 2.1E+02 0.0045 21.0 4.4 32 42-73 42-75 (78)
365 PRK09856 fructoselysine 3-epim 21.6 5.8E+02 0.013 23.2 8.7 18 118-135 15-32 (275)
366 PRK14847 hypothetical protein; 21.4 7.4E+02 0.016 23.9 10.6 20 389-409 280-299 (333)
367 PRK00915 2-isopropylmalate syn 21.2 7E+02 0.015 25.6 9.7 52 179-236 152-208 (513)
368 PRK09432 metF 5,10-methylenete 21.2 7E+02 0.015 23.5 10.0 104 116-231 97-209 (296)
369 PRK11858 aksA trans-homoaconit 21.1 7.9E+02 0.017 24.0 11.4 57 179-235 78-140 (378)
370 PRK00507 deoxyribose-phosphate 20.8 4.8E+02 0.01 23.4 7.5 24 114-137 20-43 (221)
371 COG0320 LipA Lipoate synthase 20.8 7E+02 0.015 23.4 9.3 61 166-226 218-282 (306)
372 COG0159 TrpA Tryptophan syntha 20.8 6.8E+02 0.015 23.2 10.0 41 180-230 113-153 (265)
373 PRK07094 biotin synthase; Prov 20.7 7.2E+02 0.016 23.4 11.5 109 115-230 72-184 (323)
374 PRK04208 rbcL ribulose bisopho 20.4 9.1E+02 0.02 24.5 10.4 108 116-233 176-290 (468)
375 TIGR03700 mena_SCO4494 putativ 20.3 7.8E+02 0.017 23.7 11.1 48 179-231 85-132 (351)
376 PRK00912 ribonuclease P protei 20.1 1.2E+02 0.0026 27.4 3.5 34 100-136 3-36 (237)
No 1
>PLN02795 allantoinase
Probab=100.00 E-value=5.4e-65 Score=511.86 Aligned_cols=406 Identities=68% Similarity=1.109 Sum_probs=336.8
Q ss_pred CccchhhHHHhhHHHHHHHHHHHHHhhc-ccccccccccCCCCcceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCC
Q 015110 1 MENLNLQWRLLPTLTLLAASLFLLVFKD-SAKLSHSECSLLPYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDW 79 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~ 79 (413)
||+-=.+-+.+|+...++++++.+.|-. ..-...+.+++.|+.+++|+|++|+++++...++|+|+||+|++|++....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~vv~~~~~~~~~v~i~dG~I~~I~~~~~~ 80 (505)
T PLN02795 1 MESALLQLRILPLLALLATLVFFFLFAPALPLQGRDRCSLLPWPHFVLYSKRVVTPAGVIPGAVEVEGGRIVSVTKEEEA 80 (505)
T ss_pred CchHhhhhhhHHHHHHHHHHHHHHHhccccccccccccccccccceEEECCEEEECCCeEEEEEEEECCEEEEecCcccc
Confidence 6666667788899999988888777655 222477788888889999999999998877789999999999999875322
Q ss_pred CCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 015110 80 PRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK 159 (413)
Q Consensus 80 ~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~ 159 (413)
+...++.++||++|++|+|||||+|+|+..++...++++...+++++.+||||++||+.++.|.....+.++..++....
T Consensus 81 ~~~~~~~~~ida~G~~v~PG~ID~H~H~~~~~~~~~e~~~~~~~aa~~gGvTtv~dmp~~~~P~~~~~~~~~~~~~~~~~ 160 (505)
T PLN02795 81 PKSQKKPHVLDYGNAVVMPGLIDVHVHLNEPGRTEWEGFPTGTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEAAKG 160 (505)
T ss_pred ccccCCCEEEECCCCEEecCEEecccCcCCCCccchhHHHHHHHHHHcCCcEEEECCCCCCCCCCChHHHHHHHHHHhcc
Confidence 11112568999999999999999999998877777889999999999999999999995566777778888888877766
Q ss_pred CCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchh
Q 015110 160 RIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSER 239 (413)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~ 239 (413)
...++++++.+.........+++.++.+.|+.+||.|+.+++...++..+.+.+.++++.++++|+++++|+|+.+.+..
T Consensus 161 ~~~vd~~~~~~~~~~~~~~~~~l~~~~~~G~~g~k~f~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~ 240 (505)
T PLN02795 161 KLYVDVGFWGGLVPENAHNASVLEELLDAGALGLKSFMCPSGINDFPMTTATHIKAALPVLAKYGRPLLVHAEVVSPVES 240 (505)
T ss_pred CceeeeeceecccCcchhHHHHHHHHHHCCCcEEEEEecccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecCChhHhhh
Confidence 77888887765544333456778888888999999998775443445678899999999999999999999999886542
Q ss_pred hHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEc
Q 015110 240 HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVET 319 (413)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~ 319 (413)
.... ..+..++..++.+||+.+|..++.+++.+++.+++.+..+|+++|++|+|+..+++++|+++|++|++|+|||
T Consensus 241 ~~~~---~~~~~~~~~~~~~rP~~aE~~ai~~~~~la~~~~~~~~~~g~~lhi~HiSt~~~~~e~i~~ak~~G~~Vt~Ev 317 (505)
T PLN02795 241 DSRL---DADPRSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPGGVAEGAHVHIVHLSDAESSLELIKEAKAKGDSVTVET 317 (505)
T ss_pred hhhh---hcCCcChhHhcccCCHHHHHHHHHHHHHHHHHhhhcccCCCCCEEEEECCChHHHHHHHHHHHHCCCcEEEEe
Confidence 2111 1233455567889999999999999999999865554455999999999996579999999999999999999
Q ss_pred cccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEEcCCCCCCChhhhccCCCCccccCCCcchHhHHHH
Q 015110 320 CPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCS 399 (413)
Q Consensus 320 ~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~ 399 (413)
|||||+|+++++..+++.+||+||||++++|++||++|++|+||+|+|||+||+.++|..++.+|+.+++|++|+|+++|
T Consensus 318 ~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~aL~~al~~G~Id~i~sDHap~~~~~K~~~~~~~~~a~~G~~gle~~l~ 397 (505)
T PLN02795 318 CPHYLAFSAEEIPDGDTRYKCAPPIRDAANRELLWKALLDGDIDMLSSDHSPSPPDLKLLEEGNFLRAWGGISSLQFVLP 397 (505)
T ss_pred ChhhhcccHHHccCCCCceEEcCCCCChHHHHHHHHHHhCCCceEEecCCCCCChHHhccCcCCHhhCCCCceeHHHHHH
Confidence 99999999998877789999999999999999999999999999999999999999987655679999999999999999
Q ss_pred HHhhhccccCC
Q 015110 400 LFFLSRGLMGG 410 (413)
Q Consensus 400 ~~~~~~gv~~g 410 (413)
++|+ ++++.|
T Consensus 398 ~~~~-~~~~~~ 407 (505)
T PLN02795 398 ATWT-AGRAYG 407 (505)
T ss_pred HHHH-HHHHcC
Confidence 9995 566433
No 2
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.5e-64 Score=493.10 Aligned_cols=343 Identities=35% Similarity=0.516 Sum_probs=304.6
Q ss_pred cceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchHHHH
Q 015110 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 122 (413)
Q Consensus 43 ~~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~ 122 (413)
++++|+|+++++++....++|.|+||+|++|+...... .+.++||++|++|+||+||.|+|+++++...+|++.+++
T Consensus 1 ~~~lIk~~~iv~~~~~~~~di~i~~g~I~~Ig~~l~~~---~~~~iiD~~g~~v~PG~ID~HVH~repg~~~ke~~~tgs 77 (430)
T COG0044 1 MDLLIKNARVVDPGEDEVADILIKDGKIAAIGKNLEPT---SGAEIIDAKGLLVLPGLVDLHVHFREPGFEHKETFETGS 77 (430)
T ss_pred CcEEEeccEEEcCCCceEecEEEECCEEEEeccCCCCC---CCCcEEECCCCEEccCeeEEEEecCCCCcchhhhHHHHH
Confidence 36899999999996677999999999999999864332 367899999999999999999999999999999999999
Q ss_pred HHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecCCCC
Q 015110 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI 202 (413)
Q Consensus 123 ~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~ 202 (413)
++|+++||||+++|| |+.|..++.+.++..++.++....+++.++++++..+....+.++... ..++|.|+..+.
T Consensus 78 ~AAa~GG~Ttv~dmP-nt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~it~~~~~~~~~~~~~~---~~g~~~F~~~~~- 152 (430)
T COG0044 78 RAAAAGGVTTVVDMP-NTKPPIDTAEALEDKLERAKGKSVVDYAFYGGLTKGNLGKLELTERGV---EAGFKGFMDDST- 152 (430)
T ss_pred HHHHcCCceEEEECC-CCCCCCCCHHHHHHHHHHhhccceeEEEEEEEEeccccchhhhhhhhh---ccceEEEecCCc-
Confidence 999999999999999 888999999999999999988899999999998876543222222222 456677876642
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccC
Q 015110 203 NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTD 282 (413)
Q Consensus 203 ~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~ 282 (413)
+..+.+.+++.++++++.|.++.+|+|+.+.+..+.+++ +..+...|+..+|..+|..++.+.+++++.+
T Consensus 153 ---~~~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~----g~~~~~~~~~~~p~~aE~~~iar~~~la~~~--- 222 (430)
T COG0044 153 ---GALDDDVLEEALEYAAELGALILVHAEDDDLIAEGVMNE----GLRAPELGLAGRPPIAEASAIARDLELARAT--- 222 (430)
T ss_pred ---CcCCHHHHHHHHHHHHhcCCeEEEecCChhHhhhHHHhc----CccchhhccCCCChHHHHHHHHHHHHHHHHh---
Confidence 357889999999999999999999999998776666644 4566778899999999999999999999975
Q ss_pred CCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCc
Q 015110 283 GPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI 362 (413)
Q Consensus 283 ~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i 362 (413)
|+|+|++|+|++ +++++++.+|+.|++||||+|||||+|+++++..+++++|||||||++++|++||+++++|+|
T Consensus 223 ----g~~vhi~HiSt~-~sv~li~~ak~~g~~vt~EvtphHL~l~~~~~~~~~~~~k~nPPLR~~~dr~aL~~~l~~G~I 297 (430)
T COG0044 223 ----GARVHICHISTK-ESVELIRAAKAEGIRVTAEVTPHHLLLDEEDIEDLGTLAKVNPPLRDEEDREALWEALKDGVI 297 (430)
T ss_pred ----CCcEEEEEcCCH-HHHHHHHHHhhcCCceEEeecchheEccHhHhhccCcceEECCCCCCHHHHHHHHHHHhCCCC
Confidence 899999999999 999999999999999999999999999999888889999999999999999999999999999
Q ss_pred cEEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhhhccccCCCCC
Q 015110 363 DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNME 413 (413)
Q Consensus 363 ~~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~~ 413 (413)
|+|+|||+||+.++|.. +|+.+|+|++|+|+.+|++|+ .|++|++.
T Consensus 298 D~iasDHaPht~eeK~~---~f~~ap~G~~glE~~lpl~l~--lv~~g~ls 343 (430)
T COG0044 298 DVIASDHAPHTLEEKRL---PFEEAPSGIPGLETALPLLLT--LVKKGRLS 343 (430)
T ss_pred cEEEcCCCCCCHHHhcc---chhhCCCCCccHHHHHHHHHH--HHHcCCcC
Confidence 99999999999999953 489999999999999999996 99999873
No 3
>PRK07369 dihydroorotase; Provisional
Probab=100.00 E-value=2.7e-63 Score=488.91 Aligned_cols=345 Identities=26% Similarity=0.362 Sum_probs=299.7
Q ss_pred CcceEEEccEEEcCCC--ceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchH
Q 015110 42 YNQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 119 (413)
Q Consensus 42 ~~~lli~n~~vi~~~~--~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~ 119 (413)
|.+++|+|++|+++.+ ...++|+|+||+|++|++..... ..+.++||++|++|+|||||+|+|++.++....+++.
T Consensus 1 ~~~~~i~n~~v~d~~~~~~~~~~v~I~dg~I~~i~~~~~~~--~~~~~~iDa~G~~vlPG~ID~H~H~~~~~~~~~e~~~ 78 (418)
T PRK07369 1 MSNELLQQVRVLDPVSNTDRIADVLIEDGKIQAIEPHIDPI--PPDTQIIDASGLILGPGLVDLYSHSGEPGFEERETLA 78 (418)
T ss_pred CCCEEEeCeEEECCCCCcccceeEEEECCEEEEecCCcccC--CCCCEEEECCCCEEecCEEecccccCCCCcCCCccHH
Confidence 4588999999998654 35789999999999998653211 1356899999999999999999999988888889999
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCc-hhhHHHHHHHHHcCCcEEEEeec
Q 015110 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-AYNASALEALLNAGVLGLKSFMC 198 (413)
Q Consensus 120 ~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~G~~~ik~~~~ 198 (413)
+.+++|+++||||+++|| |+.|...+.+.+..+++.+...+.+|+.+++.+.... ...++++.++.+.|+.+||.+
T Consensus 79 s~~~aa~~GGvTtv~~~p-n~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~ei~~l~~~Gv~~f~~~-- 155 (418)
T PRK07369 79 SLAAAAAAGGFTRVAILP-DTFPPLDNPATLARLQQQAQQIPPVQLHFWGALTLGGQGKQLTELAELAAAGVVGFTDG-- 155 (418)
T ss_pred HHHHHHHhCCceEEEECC-CCCCCCCCHHHHHHHHHHhcccCceeEEEEEEEeeCCCCccHhhHHHHHHCCCEEEECC--
Confidence 999999999999999999 8888888899999888888777889999988775443 235778888888899988732
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhh
Q 015110 199 PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 278 (413)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~ 278 (413)
.+..+...+.++++.++++|+++.+|+|+.+++.+++++ .+..+...|+.+||+.+|..++.+++.+++.
T Consensus 156 ------~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~----~g~~~~~~~~~~~p~~aE~~av~r~~~la~~ 225 (418)
T PRK07369 156 ------QPLENLALLRRLLEYLKPLGKPVALWPCDRSLAGNGVMR----EGLLALRLGLPGDPASAETTALAALLELVAA 225 (418)
T ss_pred ------CcCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhcCccc----CChhHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 234567789999999999999999999999986554443 3455667788999999999999999999997
Q ss_pred cccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHh
Q 015110 279 TRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALM 358 (413)
Q Consensus 279 ~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~ 358 (413)
+ |+|+||+|+|++ +++++|+++|++|++||||||||||+|+++++..+++.+||+||||++++|++||++|+
T Consensus 226 ~-------~~~~hi~HvSs~-~~~~~i~~ak~~g~~vt~Ev~phhL~l~~~~~~~~~~~~kv~PPLR~~~d~~aL~~~l~ 297 (418)
T PRK07369 226 I-------GTPVHLMRISTA-RSVELIAQAKARGLPITASTTWMHLLLDTEALASYDPNLRLDPPLGNPSDRQALIEGVR 297 (418)
T ss_pred H-------CCcEEEEeCCCH-HHHHHHHHHHHcCCCeEEEecHHHHhccHHHHhccCCCcEECCCCCCHHHHHHHHHHHh
Confidence 5 999999999999 99999999999999999999999999999988777889999999999999999999999
Q ss_pred cCCccEEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhhhccccCCCCC
Q 015110 359 DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNME 413 (413)
Q Consensus 359 ~G~i~~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~~ 413 (413)
+|+||+|+|||+||+.++|.. +|+.+++|++|+|+.||+++ ..+|++|+++
T Consensus 298 ~G~Id~i~SDHaP~~~~~K~~---~~~~~~~G~~G~e~~l~~~~-~~~v~~~~i~ 348 (418)
T PRK07369 298 TGVIDAIAIDHAPYTYEEKTV---AFAEAPPGAIGLELALPLLW-QNLVETGELS 348 (418)
T ss_pred cCCCCEEEcCCCCCCHHHccC---CHhHCCCCceeHHHHHHHHH-HHHHHcCCCC
Confidence 999999999999999988853 69999999999999999999 4688888763
No 4
>PRK07627 dihydroorotase; Provisional
Probab=100.00 E-value=1.3e-60 Score=471.22 Aligned_cols=334 Identities=23% Similarity=0.323 Sum_probs=281.9
Q ss_pred ceEEEccEEEcCCCc--eeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchHHH
Q 015110 44 QYWLTSKRIVTPKGV--ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 121 (413)
Q Consensus 44 ~lli~n~~vi~~~~~--~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~ 121 (413)
+++|+|++|+++.+. .+++|+|+||||++|++..... .+.++||++|++|+|||||+|+|++.++...++++.+.
T Consensus 2 ~~~i~~~~v~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~---~~~~~iDa~g~~vlPG~iD~H~H~~~~g~~~~e~~~t~ 78 (425)
T PRK07627 2 KIHIKGGRLIDPAAGTDRQADLYVAAGKIAAIGQAPAGF---NADKTIDASGLIVCPGLVDLSARLREPGYEYKATLESE 78 (425)
T ss_pred eEEEEeeEEECCCCCccceeEEEEECCEEEEecCCCcCC---CCCeEEECCCCEEeccEEeccccccCCCccccCcHHHH
Confidence 689999999987653 4789999999999998753211 35689999999999999999999998887788999999
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecC-CchhhHHHHHHHHHcCCcEEEEeecCC
Q 015110 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP-ENAYNASALEALLNAGVLGLKSFMCPS 200 (413)
Q Consensus 122 ~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~G~~~ik~~~~~~ 200 (413)
+++++++||||+++|| ++.|.....+.++............++.+++.+.. ...+.++++.++.+.|+.+||.+
T Consensus 79 s~aa~~gGvTtv~~~p-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~l~~~G~~~fk~~---- 153 (425)
T PRK07627 79 MAAAVAGGVTSLVCPP-DTDPVLDEPGLVEMLKFRARNLNQAHVYPLGALTVGLKGEVLTEMVELTEAGCVGFSQA---- 153 (425)
T ss_pred HHHHHhCCeeEEEeCC-CCCCCCCCHHHHHHHHHHhhccCceeEEEeCeEEcCCCccCHHHHHHHHhCCEEEEEcC----
Confidence 9999999999999999 77776666666666555544444555544444332 23345778888888999999864
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcc
Q 015110 201 GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTR 280 (413)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~ 280 (413)
..+..+...+.++++.++++|.++.+|+|+......+.. ..+..+...|+.+||+.+|..++.+++.+++.+
T Consensus 154 ---~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~~~~~~~~----~~g~~~~~~~~~~~P~~aE~~av~r~~~la~~~- 225 (425)
T PRK07627 154 ---NVPVVDTQVLLRALQYASTFGFTVWLRPLDAFLGRGGVA----ASGAVASRLGLSGVPVAAETIALHTIFELMRVT- 225 (425)
T ss_pred ---CcccCCHHHHHHHHHHHHhcCCEEEEecCChhhhhCCCc----CCCHhHHHcCCCCCCHHHHHHHHHHHHHHHHHH-
Confidence 123467888999999999999999999999877543333 223445667889999999999999999999975
Q ss_pred cCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcC
Q 015110 281 TDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 360 (413)
Q Consensus 281 ~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G 360 (413)
|+|+||+|+|++ +++++|+++|++|++||||||||||+|+++++..+++.+||+||||++++|++||+++++|
T Consensus 226 ------~~~~hi~HvSs~-~~~~~i~~ak~~g~~vt~Ev~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~~L~~~l~~G 298 (425)
T PRK07627 226 ------GARVHLARLSSA-AGVALVRAAKAEGLPVTCDVGVNHVHLIDVDIGYFDSQFRLDPPLRSQRDREAIRAALADG 298 (425)
T ss_pred ------CCcEEEEeCCCH-HHHHHHHHHHHCCCCeEEEeccchheEeHhHHhccCCceEEeCCCCCHHHHHHHHHHHhcC
Confidence 899999999999 9999999999999999999999999999998877788999999999999999999999999
Q ss_pred CccEEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhh
Q 015110 361 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFL 403 (413)
Q Consensus 361 ~i~~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~ 403 (413)
+||+|+|||+||+.++|. .+|+.+++|++|+|+.+|++++
T Consensus 299 ~id~i~SDHaP~~~~~k~---~~~~~~~~G~~g~e~~~pl~~~ 338 (425)
T PRK07627 299 TIDAICSDHTPVDDDEKL---LPFAEATPGATGLELLLPLTLK 338 (425)
T ss_pred CCcEEEcCCCCCCHHHcc---CCHhhCCCCceeHHHHHHHHHH
Confidence 999999999999988884 3689999999999999999984
No 5
>PRK09059 dihydroorotase; Validated
Probab=100.00 E-value=3.1e-60 Score=469.07 Aligned_cols=347 Identities=22% Similarity=0.296 Sum_probs=293.9
Q ss_pred CcceEEEccEEEcCCCc--eeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchH
Q 015110 42 YNQYWLTSKRIVTPKGV--ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 119 (413)
Q Consensus 42 ~~~lli~n~~vi~~~~~--~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~ 119 (413)
+.+++|+|++|+++++. .+++|+|+||+|++|++.......+.+.++||++|++|+|||||+|+|++.++....+++.
T Consensus 2 ~~~~~i~n~~v~~~~~~~~~~~~v~I~~G~I~~i~~~~~~~~~~~~~~viDa~G~~v~PG~ID~HvH~~~~~~~~~e~~~ 81 (429)
T PRK09059 2 MRPILLANARIIDPSRGLDEIGTVLIEDGVIVAAGKGAGNQGAPEGAEIVDCAGKAVAPGLVDARVFVGEPGAEHRETIA 81 (429)
T ss_pred CcCEEEEeeEEECCCCCcccceEEEEECCEEEEecCccccccCCCCCeEEECCCCEEeccEEecccccCCCCchhhhhHH
Confidence 45789999999998774 3789999999999998643211001256899999999999999999999877666778888
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCC-chhhHHHHHHHHHcCCcEEEEeec
Q 015110 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-NAYNASALEALLNAGVLGLKSFMC 198 (413)
Q Consensus 120 ~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~G~~~ik~~~~ 198 (413)
..+++++++||||+++|| ++.|...+.+.+..+++.+.....+++.+++.++.. ..+.++++.++.+.|+.+|+.+
T Consensus 82 ~~s~aa~~gGvTtv~~~p-~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~~~Gv~~f~~~-- 158 (429)
T PRK09059 82 SASRAAAAGGVTSIIMMP-DTDPVIDDVALVEFVKRTARDTAIVNIHPAAAITKGLAGEEMTEFGLLRAAGAVAFTDG-- 158 (429)
T ss_pred HHHHHHHhCCcEEEEecc-CCCCCCCCHHHHHHHHHHhcccCcccEEEEeEEecCCCCcchHHHHHHHhcCcEEEecC--
Confidence 999999999999999999 777878888888888877776677899888776553 3445778888888898877632
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhh
Q 015110 199 PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 278 (413)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~ 278 (413)
..+..+...+.++++.++++|+++.+|+|+.+.+....+.+ +..+...|+.+||..+|..++.+++.+++.
T Consensus 159 -----~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~----~~~~~~~~~~~rP~~aE~~av~r~~~la~~ 229 (429)
T PRK09059 159 -----RRSVANTQVMRRALTYARDFDAVIVHETRDPDLGGNGVMNE----GLFASWLGLSGIPREAEVIPLERDLRLAAL 229 (429)
T ss_pred -----CcccCCHHHHHHHHHHHHhcCCEEEEecCChhhhcCCCcCC----cHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 12345677799999999999999999999998765433322 234456677899999999999999999997
Q ss_pred cccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHh
Q 015110 279 TRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALM 358 (413)
Q Consensus 279 ~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~ 358 (413)
+ |+|+||+|+|+. +++++|+.+|++|++|+||||||||+|+++++..+++.+|++||||++++|++||++|+
T Consensus 230 ~-------~~~~hi~hvs~~-~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~~~~~~kvnPPLR~~~d~~~L~~~l~ 301 (429)
T PRK09059 230 T-------RGRYHAAQISCA-ESAEALRRAKDRGLKVTAGVSINHLSLNENDIGEYRTFFKLSPPLRTEDDRVAMVEAVA 301 (429)
T ss_pred H-------CCcEEEEecCCH-HHHHHHHHHHHCCCCEEEeecHHHHhccHHHHhccCCccEEcCCCCCHHHHHHHHHHHH
Confidence 5 899999999999 99999999999999999999999999999988777889999999999999999999999
Q ss_pred cCCccEEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhhhccccCCCCC
Q 015110 359 DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNME 413 (413)
Q Consensus 359 ~G~i~~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~~ 413 (413)
+|.||+|+|||+||+.++|. .+|+.+++|++|+|+++|++|+ +|++|+++
T Consensus 302 ~g~id~i~sDh~p~~~~~K~---~~~~~~~~G~~gle~~l~~~~~--~v~~~~l~ 351 (429)
T PRK09059 302 SGTIDIIVSSHDPQDVDTKR---LPFSEAAAGAIGLETLLAAALR--LYHNGEVP 351 (429)
T ss_pred cCCCcEEEeCCCCCCHHHCc---CChhhCCCCcccHHHHHHHHHH--HHHcCCCC
Confidence 99999999999999988885 3699999999999999999995 78888763
No 6
>PRK08417 dihydroorotase; Provisional
Probab=100.00 E-value=6.6e-60 Score=462.11 Aligned_cols=313 Identities=23% Similarity=0.271 Sum_probs=269.0
Q ss_pred EEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchHHHHHHHHhCCceEEEeCCCCCCC
Q 015110 63 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDP 142 (413)
Q Consensus 63 V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~~~~~~ 142 (413)
|+|+||||++|++.. .+.++||++|++|+|||||+|+|++.++.. ++++.+++++|+++||||+++|| ++.|
T Consensus 1 i~I~dG~I~~i~~~~------~~~~viDa~g~~vlPG~ID~HvH~~~~~~~-~e~~~t~s~aA~aGGvTtv~dmp-nt~P 72 (386)
T PRK08417 1 IRIKDGKITEIGSDL------KGEEILDAKGKTLLPALVDLNVSLKNDSLS-SKNLKSLENECLKGGVGSIVLYP-DSTP 72 (386)
T ss_pred CEEECCEEEEecCCC------CCCeEEECCCCEEccCeeEEeeeeCCCCcC-hhhHHHHHHHHHcCCcEEEEeCC-CCCC
Confidence 579999999998653 256899999999999999999999887655 58999999999999999999999 7778
Q ss_pred CCCcHHHHHHHHHHHhc--CCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHH
Q 015110 143 STISTETLKLKVDAAEK--RIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVL 220 (413)
Q Consensus 143 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A 220 (413)
..++.+.++...+.... ...+++.. .. ...+..+++.++.+.|+.+||.+. ..+.+.+.++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~i~~l~~~Gv~~~k~~~---------~~~~~~l~~~~~~a 139 (386)
T PRK08417 73 AIDNEIALELINSAQRELPMQIFPSIR---AL-DEDGKLSNIATLLKKGAKALELSS---------DLDANLLKVIAQYA 139 (386)
T ss_pred CCCCHHHHHHHHHHhhccCCcEEEEEE---EE-CCCccHHHHHHHHHCCCEEEECCC---------CCCHHHHHHHHHHH
Confidence 88888888777665543 33444422 22 233457788888889999887631 35788999999999
Q ss_pred HhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhh
Q 015110 221 ARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS 300 (413)
Q Consensus 221 ~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~ 300 (413)
+++|+++.+|+|+.+.+....+.. +..++..|+.+||..+|..++.+++++++++ |+++||+|+|++ +
T Consensus 140 ~~~g~~V~~HaEd~~~~~~~~~~~----g~~~~~~~~~~rp~~aE~~~v~~~~~la~~~-------~~~lhi~hvS~~-~ 207 (386)
T PRK08417 140 KMLDVPIFCRCEDSSFDDSGVMND----GELSFELGLPGIPSIAETKEVAKMKELAKFY-------KNKVLFDTLALP-R 207 (386)
T ss_pred HHcCCEEEEeCCCHHHhhHHHHhc----ChhhHHhCCCCCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-H
Confidence 999999999999988876554433 3456777889999999999999999999976 899999999999 9
Q ss_pred HHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEEcCCCCCCChhhhccC
Q 015110 301 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLD 380 (413)
Q Consensus 301 ~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p~~~~~k~~~ 380 (413)
++++|+++|++|++||||||||||+|+++++..+++.+|++||||++++|++||++|++|+||+|+|||+||+.++|..
T Consensus 208 ~~~~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlR~~~d~~~L~~~l~~g~Id~i~SDHaP~~~~~K~~- 286 (386)
T PRK08417 208 SLELLDKFKSEGEKLLKEVSIHHLILDDSACENFNTAAKLNPPLRSKEDRLALLEALKEGKIDFLTSLHSAKSNSKKDL- 286 (386)
T ss_pred HHHHHHHHHHCCCCEEEEechHHHeeCHHHhcCcCcccEECCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHccC-
Confidence 9999999999999999999999999999888777889999999999999999999999999999999999999888853
Q ss_pred CCCccccCCCcchHhHHHHHHhhhccccCCCC
Q 015110 381 EGNFLKAWGGISSLQIFCSLFFLSRGLMGGNM 412 (413)
Q Consensus 381 ~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~ 412 (413)
+|+.+++|++|+|+++|++|+ .+|++|++
T Consensus 287 --~~~~a~~G~~g~e~~~~~~~~-~~v~~~~~ 315 (386)
T PRK08417 287 --AFDEAAFGIDSICEYFSLCYT-YLVKEGII 315 (386)
T ss_pred --CHhHCCCCchHHHHHHHHHHH-HHHhcCCC
Confidence 689999999999999999994 68888775
No 7
>PRK13404 dihydropyrimidinase; Provisional
Probab=100.00 E-value=2.1e-58 Score=462.32 Aligned_cols=350 Identities=25% Similarity=0.364 Sum_probs=292.1
Q ss_pred cceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCC---CCCCccchH
Q 015110 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRTEWEGFP 119 (413)
Q Consensus 43 ~~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~---~~~~~e~~~ 119 (413)
++++|+|++|+++.+..+++|+|+||+|++|++.. + .+.++||++|++|+|||||+|+|+..+ +....+++.
T Consensus 4 ~d~~i~~~~v~~~~~~~~~~i~I~dg~I~~i~~~~--~---~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~e~~~ 78 (477)
T PRK13404 4 FDLVIRGGTVVTATDTFQADIGIRGGRIAALGEGL--G---PGAREIDATGRLVLPGGVDSHCHIDQPSGDGIMMADDFY 78 (477)
T ss_pred CcEEEECCEEEcCCCceEEEEEEECCEEEEecCCC--C---CCCeEEECCCCEEecCEEEeEEcCCccccCCccccchHH
Confidence 47899999999987766889999999999998642 1 256899999999999999999999765 344568899
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhH-HHHHHHHHcCCcEEEEeec
Q 015110 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA-SALEALLNAGVLGLKSFMC 198 (413)
Q Consensus 120 ~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~G~~~ik~~~~ 198 (413)
+.+++++.+||||+++++ ++.+.....+.++.........+.++++++........+.. ++++++.+.|+.+||+|++
T Consensus 79 ~~s~aa~~gGvTtv~~~~-~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~v~~l~~~G~~~iKi~~~ 157 (477)
T PRK13404 79 TGTVSAAFGGTTTVIPFA-AQHRGQSLREAVEDYHRRAAGKAVIDYAFHLIVADPTEEVLTEELPALIAQGYTSFKVFMT 157 (477)
T ss_pred HHHHHHHcCCccEEEEcc-CCCCCCCHHHHHHHHHHHhccCcEEEEEEEEEecCCChhhHHHHHHHHHHcCCCEEEEEec
Confidence 999999999999999998 55566666777877776766777889988766544333333 6788888999999999975
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhh
Q 015110 199 PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 278 (413)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~ 278 (413)
+.+ +.++++++.+++++|+++|++|.+|+|+.+.+........ ..+..+...|+..||..+|..++.+++.++++
T Consensus 158 ~~~----~~~~~~~l~~~~~~a~~~g~~V~~Hae~~~~i~~~~~~~~-~~G~~~~~~~~~~rp~~~E~~~v~~~~~la~~ 232 (477)
T PRK13404 158 YDD----LKLDDRQILDVLAVARRHGAMVMVHAENHDMIAWLTKRLL-AAGLTAPKYHAISRPMLAEREATHRAIALAEL 232 (477)
T ss_pred CCC----CCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHH-HCCCcchhhccccCCHHHHHHHHHHHHHHHHH
Confidence 421 3468899999999999999999999999887642111111 22344556778899999999999999999997
Q ss_pred cccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCC---CCcceEEcCCCCChhcHHHHHH
Q 015110 279 TRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD---GDTRFKCAPPIRDAANKEKLWE 355 (413)
Q Consensus 279 ~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~---~~~~~k~~Pplr~~~~~~~L~~ 355 (413)
+ |+|+|++|+|++ +++++|+.+|++|+.|+||||||||+|+++++.. .|+.+||+||||++++|++||+
T Consensus 233 ~-------g~~~hi~Hvs~~-~~~~~i~~~k~~g~~vt~e~~ph~L~l~~~~~~~~~~~g~~~k~~Pplr~~~d~~aL~~ 304 (477)
T PRK13404 233 V-------DVPILIVHVSGR-EAAEQIRRARGRGLKIFAETCPQYLFLTAEDLDRPGMEGAKYICSPPPRDKANQEAIWN 304 (477)
T ss_pred h-------CCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEEChhhhccCHHHhcCccccCCceEECCCCCChHHHHHHHH
Confidence 5 999999999999 9999999999999999999999999999988765 6889999999999999999999
Q ss_pred HHhcCCccEEcCCCCCCChhhhc----cC-CCCccccCCCcchHhHHHHHHhhhccccCCCC
Q 015110 356 ALMDGHIDMLSSDHSPTVPELKL----LD-EGNFLKAWGGISSLQIFCSLFFLSRGLMGGNM 412 (413)
Q Consensus 356 ~l~~G~i~~i~sDh~p~~~~~k~----~~-~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~ 412 (413)
+|++|.||+|+|||+||+.++|. .. ..+|+.+++|++|+|+.+|+++ +++|+++++
T Consensus 305 ~l~~G~id~i~sDHap~~~~eK~~~~~~~~~~~~~~~~~G~~gie~~l~~ll-~~~v~~~~l 365 (477)
T PRK13404 305 GLADGTFEVFSSDHAPFRFDDTDGKLAAGANPSFKAIANGIPGIETRLPLLF-SEGVVKGRI 365 (477)
T ss_pred HHhCCCceEEecCCCCCCcccchhhhhccCCCCHhhCCCCcccHHHHHHHHH-HHHHHcCCC
Confidence 99999999999999999977661 11 1368889999999999999999 578877765
No 8
>PRK06189 allantoinase; Provisional
Probab=100.00 E-value=5.4e-58 Score=458.04 Aligned_cols=352 Identities=39% Similarity=0.694 Sum_probs=299.9
Q ss_pred cceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchHHHH
Q 015110 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 122 (413)
Q Consensus 43 ~~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~ 122 (413)
++++|+|++|+++++..+++|+|+||+|++|++.... ++.++||++|++|+|||||+|+|+..++...++++.+.+
T Consensus 3 ~~~~i~~~~v~~~~~~~~~~v~i~~G~I~~i~~~~~~----~~~~~iD~~g~~vlPG~ID~H~H~~~~~~~~~~~~~~~~ 78 (451)
T PRK06189 3 YDLIIRGGKVVTPEGVYRADIGIKNGKIAEIAPEISS----PAREIIDADGLYVFPGMIDVHVHFNEPGRTHWEGFATGS 78 (451)
T ss_pred ccEEEECCEEEcCCCcEEEEEEEECCEEEEecCCCCC----CCCeEEECCCCEEecCEEEeeeccCCCCCCCcccHHHHH
Confidence 5789999999998877789999999999999875321 246799999999999999999999987766788999999
Q ss_pred HHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecCCCC
Q 015110 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI 202 (413)
Q Consensus 123 ~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~ 202 (413)
+.++++||||+++||.++.|...+.+.+....+.++..+.+++.++.+.... ..+++.++.+.|+.++|.|+...+.
T Consensus 79 ~aa~~gGvTt~~~~p~~t~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~l~~l~~~Gv~~~k~f~~~~~~ 155 (451)
T PRK06189 79 AALAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQKSAVDFALWGGLVPG---NLEHLRELAEAGVIGFKAFMSNSGT 155 (451)
T ss_pred HHHHhCCEEEEEECCCCCCCCCCcHHHHHHHHHHhCcCceEeEEEEeccccc---CHHHHHHHHHcCCcEEEEEccccCC
Confidence 9999999999999986666777778888888887777788999987554433 3567888888999999999865432
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccC
Q 015110 203 NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTD 282 (413)
Q Consensus 203 ~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~ 282 (413)
...+..+...+.++++.+++.|.++.+|+|+.+.+........ ..+..+...|+..+|+.+|..++.+++.+++++
T Consensus 156 ~~~~~~~~~~l~~~~~~~~~~~~~~~~H~e~~~~~~~~~~~~~-~~g~~~~~~~~~~~P~~~E~~~v~~~l~la~~~--- 231 (451)
T PRK06189 156 DEFRSSDDLTLYEGMKEIAALGKILALHAESDALTRHLTTQAR-QQGKTDVRDYLESRPVVAELEAVQRALLYAQET--- 231 (451)
T ss_pred CCcCcCCHHHHHHHHHHHHhcCCeEEEECCChHHHHHHHHHHH-hcCCCChhHccccCCHHHHHHHHHHHHHHHHHh---
Confidence 2344567889999999999999999999999886543211000 223445666889999999999999999999975
Q ss_pred CCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCc
Q 015110 283 GPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI 362 (413)
Q Consensus 283 ~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i 362 (413)
|+++|++|+|+. +++++|+++|++|.+||||||||||+++++++...++.+|++||||++++|++||+++++|++
T Consensus 232 ----g~~~hi~HiSt~-~~~~~i~~~k~~g~~vt~ev~ph~L~l~~~~~~~~~~~~~~~Pplr~~~~~~~L~~~l~~G~i 306 (451)
T PRK06189 232 ----GCPLHFVHISSG-KAVALIAEAKKRGVDVSVETCPHYLLFTEEDFERIGAVAKCAPPLRSRSQKEELWRGLLAGEI 306 (451)
T ss_pred ----CCCEEEEECCCH-HHHHHHHHHHHCCCcEEEEeCHHHhhcCHhHhhCcCCceEEeCCCCChhhHHHHHHHHhCCCc
Confidence 899999999999 999999999999999999999999999998876678899999999999999999999999999
Q ss_pred cEEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhhhccccCCCCC
Q 015110 363 DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNME 413 (413)
Q Consensus 363 ~~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~~ 413 (413)
|+|+|||+||+.++|. ..+|+.+++|++|+|+++|++| +++|++++|+
T Consensus 307 ~~i~sDh~p~~~~~K~--~~~~~~~~~G~~g~e~~l~~~~-~~~~~~~~l~ 354 (451)
T PRK06189 307 DMISSDHSPCPPELKE--GDDFFLVWGGISGGQSTLLVML-TEGYIERGIP 354 (451)
T ss_pred eEEECCCCCCCHHHcC--cCCcccCCCCceeHHHHHHHHH-HHHHhcCCCC
Confidence 9999999999988885 2478899999999999999999 4788888763
No 9
>PRK08044 allantoinase; Provisional
Probab=100.00 E-value=1.5e-56 Score=446.11 Aligned_cols=350 Identities=35% Similarity=0.636 Sum_probs=299.2
Q ss_pred cceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchHHHH
Q 015110 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 122 (413)
Q Consensus 43 ~~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~ 122 (413)
++++|+|++|+++++...++|+|+||+|++|++... .+.++||++|++++|||||+|+|+..++....+++...+
T Consensus 3 ~~~~i~n~~vi~~~~~~~~~i~I~dg~I~~i~~~~~-----~~~~~iD~~G~~v~Pg~iD~h~h~~~~~~~~~e~~~~~~ 77 (449)
T PRK08044 3 FDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLG-----DAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGT 77 (449)
T ss_pred ceEEEECcEEEcCCCCEEEEEEEECCEEEEecCCCC-----CCCeEEECCCCEEcCCeeccccccCCCCccccccHHHHH
Confidence 478999999998776667899999999999986432 256899999999999999999999988766688899999
Q ss_pred HHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecCCCC
Q 015110 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI 202 (413)
Q Consensus 123 ~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~ 202 (413)
++++++||||++||+.++.|...+.+.++.+.+.++..+.+++.+++++... ...++.++.+.|+.+||+|+++.+.
T Consensus 78 ~aa~~gGvTtv~d~~~~~~p~~~~~~~~~~~~~~~~~~s~vd~~~~~~~~~~---~~~ei~~l~~~gv~~fk~~~~~~~~ 154 (449)
T PRK08044 78 RAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSY---NLDRLHELDEVGVVGFKCFVATCGD 154 (449)
T ss_pred HHHHhCCceEEECCccCCCCCCCcHHHHHHHHHHhccCCeeeEEEEeeeCCC---CHHHHHHHHHcCceEEEEEecccCc
Confidence 9999999999999996677888889999988888877888999888776543 3677888888999999999865321
Q ss_pred ----CCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhh
Q 015110 203 ----NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 278 (413)
Q Consensus 203 ----~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~ 278 (413)
.+....++..+.++++.+++.|.++.+|+|+.+.++...... ...+..+...|+.+||..+|..++.+++.++++
T Consensus 155 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~-~~~G~~~~~~~~~~~P~~~E~~~v~r~~~lA~~ 233 (449)
T PRK08044 155 RGIDNDFRDVNDWQFYKGAQKLGELGQPVLVHCENALICDELGEEA-KREGRVTAHDYVASRPVFTEVEAIRRVLYLAKV 233 (449)
T ss_pred ccccCCccCcCHHHHHHHHHHHHhcCCEEEEecCCHHHHHHHHHHH-HhcCCCChhhccccCCHHHHHHHHHHHHHHHHH
Confidence 112235677899999999999999999999998755321110 022344566788999999999999999999997
Q ss_pred cccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHh
Q 015110 279 TRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALM 358 (413)
Q Consensus 279 ~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~ 358 (413)
+ |+++|++|+|+. +++++++.+|++|.+++||+|||||+|+++++...|+.+|++||||++++|++||++|+
T Consensus 234 ~-------g~~vhi~HiSt~-~~~~~i~~ak~~G~~it~e~~~h~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~ 305 (449)
T PRK08044 234 A-------GCRLHVCHISSP-EGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLF 305 (449)
T ss_pred h-------CCCEEEEeCCCH-HHHHHHHHHHHCCCCEEEEcChhhhcccHHHhhCCCCcEEEcCCCCChHHHHHHHHHHh
Confidence 6 899999999999 89999999999999999999999999999988777889999999999999999999999
Q ss_pred cCCccEEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhhhccccCCCCC
Q 015110 359 DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNME 413 (413)
Q Consensus 359 ~G~i~~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~~ 413 (413)
+|+||+|+|||+||+.++|. .+|+.+++|++|+|+.+|+++ +++|+++++.
T Consensus 306 ~G~id~i~sDH~P~~~~~K~---~~~~~~~~g~~g~e~~l~~~~-~~~v~~~~l~ 356 (449)
T PRK08044 306 NGEIDCLVSDHSPCPPEMKA---GNIMEAWGGIAGLQNCMDVMF-DEAVQKRGMS 356 (449)
T ss_pred CCCceEEEcCCCCCChHHcc---CChhhCCCCceEHHHHHHHHH-HHHHHcCCCC
Confidence 99999999999999988885 368899999999999999998 4788888763
No 10
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=100.00 E-value=2.6e-56 Score=445.42 Aligned_cols=351 Identities=46% Similarity=0.789 Sum_probs=299.1
Q ss_pred ceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchHHHHH
Q 015110 44 QYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTK 123 (413)
Q Consensus 44 ~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~ 123 (413)
+++|+|++|+++++..+++|+|+||+|++|++... + ++.++||++|++|+|||||+|+|+..++...++++.+.++
T Consensus 1 dl~i~~~~v~~~~~~~~~~v~i~dg~I~~i~~~~~-~---~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~ 76 (443)
T TIGR03178 1 DLIIRGGRVILPNGEREADVGVKGGKIAAIGPDIL-G---PAAKIIDAGGLVVFPGVVDTHVHINEPGRTEWEGFETGTR 76 (443)
T ss_pred CEEEECcEEECCCCceEEEEEEECCEEEEeeCCCC-C---CCCeEEECCCCEEeccEeccccccCCCCccccchHHHHHH
Confidence 47899999999887778999999999999987532 1 3568999999999999999999999877667888999999
Q ss_pred HHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecCCCCC
Q 015110 124 AAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN 203 (413)
Q Consensus 124 ~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~ 203 (413)
+++++||||+++|++++.|.....+.+...++.......+++.++.+... +..+++.++.+.|+.++|+|+.+.+..
T Consensus 77 ~~~~gGvTtv~dmp~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~i~~~~~~G~~~ik~~~~~~~~~ 153 (443)
T TIGR03178 77 AAAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKLAVDVGFWGGLVP---YNLDDLRELDEAGVVGFKAFLSPSGDD 153 (443)
T ss_pred HHHcCCeEEEEECCCCCCCCCCcHHHHHHHHHHhccCCceeEEEEeccCC---CCHHHHHHHHHCCCcEEEEEecccCCC
Confidence 99999999999998656677777888888888777667889888755433 346678888889999999998765433
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCC
Q 015110 204 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 283 (413)
Q Consensus 204 ~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~ 283 (413)
.++..+.+++.++++.++++|+++++|+|+.+.+....... ...+..++..|+..||..+|..++.+++++++++
T Consensus 154 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~-~~~g~~~~~~~~~~~p~~ae~~~~~~~~~la~~~---- 228 (443)
T TIGR03178 154 EFPHVDDWQLYKGMRELARLGQLLLVHAENPAITSALGEEA-PPQGGVGADAYLASRPVFAEVEAIRRTLALAKVT---- 228 (443)
T ss_pred CcccCCHHHHHHHHHHHHhcCCeEEEeccChHHHHHHHHHH-HhcCCCChhHhcCcCCHHHHHHHHHHHHHHHHHh----
Confidence 34567889999999999999999999999988765331111 1234456667788999999999999999999975
Q ss_pred CCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCcc
Q 015110 284 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID 363 (413)
Q Consensus 284 ~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~ 363 (413)
|+++|++|+|+. +++++++.+|++|+.+++|+|||||.++++++...++.++++||||++.++++||+++++|++|
T Consensus 229 ---g~~vhi~Hiss~-~~~~~i~~~~~~g~~it~e~~ph~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~ 304 (443)
T TIGR03178 229 ---GCRVHVVHLSSA-EAVELITEAKQEGLDVTVETCPHYLTLTAEEVPDGGTLAKCAPPIRDLANQEGLWEALLNGLID 304 (443)
T ss_pred ---CCCEEEEeCCCH-HHHHHHHHHHHCCCcEEEEECccceEecHHHhhCcCcceEEcCCCCChHHHHHHHHHHHcCCcc
Confidence 899999999999 8999999999999999999999999999988766788999999999999999999999999999
Q ss_pred EEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhhhccccCCCCC
Q 015110 364 MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNME 413 (413)
Q Consensus 364 ~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~~ 413 (413)
+|+|||+||+.++|. ..+|+.+++|++|+|+.+|++++ ..|++++++
T Consensus 305 ~i~SDh~p~~~~~K~--~~~~~~~~~G~~g~e~~l~~~~~-~~~~~~~l~ 351 (443)
T TIGR03178 305 CVVSDHSPCTPDLKR--AGDFFKAWGGIAGLQSTLDVMFD-EAVQKRGLP 351 (443)
T ss_pred EEeCCCCCCChHHcC--cCChhhCCCCeeEHHHhHHHHHH-HHHHhcCCC
Confidence 999999999988874 24788999999999999999994 677777763
No 11
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=100.00 E-value=1.6e-55 Score=441.23 Aligned_cols=353 Identities=50% Similarity=0.875 Sum_probs=300.8
Q ss_pred ceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchHHHHH
Q 015110 44 QYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTK 123 (413)
Q Consensus 44 ~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~ 123 (413)
+++|+|++|+++++..+++|+|+||||++|++....+ ++.++||++|++|+|||||+|+|+..++...++++.+.++
T Consensus 1 dl~i~~~~v~~~~~~~~~~v~I~~g~I~~i~~~~~~~---~~~~~iDa~G~~v~PG~ID~H~H~~~~~~~~~e~~~~~s~ 77 (447)
T cd01315 1 DLVIKNGRVVTPDGVREADIAVKGGKIAAIGPDIANT---EAEEVIDAGGLVVMPGLIDTHVHINEPGRTEWEGFETGTK 77 (447)
T ss_pred CEEEECCEEECCCCceEeEEEEECCEEEEEeCCCCCC---CCCeEEECCCCEEeccEeeceeccCCCCccccccHHHHHH
Confidence 5799999999987777899999999999998754311 3678999999999999999999999877777888999999
Q ss_pred HHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecCCCCC
Q 015110 124 AAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN 203 (413)
Q Consensus 124 ~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~ 203 (413)
+++++||||+++|+.++.|.....+.++..++.....+.++++++++.... ..++++++.+.|+.++|+|+.+.+..
T Consensus 78 aal~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~ei~~l~~~G~~giKv~~~~~~~~ 154 (447)
T cd01315 78 AAAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVDVGFWGGLVPG---NLDQLRPLDEAGVVGFKCFLCPSGVD 154 (447)
T ss_pred HHHhCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCceeeEEEEEeecCC---CHHHHHHHHHcCCcEEEEEecccCCC
Confidence 999999999999986656777778888888887766678888877654432 46678888889999999998764433
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCC
Q 015110 204 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 283 (413)
Q Consensus 204 ~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~ 283 (413)
.++..+.+++.++++.++++|+++++|+++.+.+........ ..+..++..++..+|..+|..++.+++++++++
T Consensus 155 ~~~~~~~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~-~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~---- 229 (447)
T cd01315 155 EFPAVDDEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAK-AKGKRDYRDYLASRPVFTEVEAIQRILLLAKET---- 229 (447)
T ss_pred CcccCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHh-hcCCCChHHhhccCCHHHHHHHHHHHHHHHHHh----
Confidence 344568899999999999999999999999887665444322 223345566788999999999999999999975
Q ss_pred CCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCcc
Q 015110 284 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID 363 (413)
Q Consensus 284 ~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~ 363 (413)
|+++|++|+|+. +++++++.+|++|.++++|+|||||.++++++...++.++++||||++.++++||+++++|.+|
T Consensus 230 ---g~~ihi~h~s~~-~~~~~i~~~~~~g~~i~~e~~~h~l~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~g~i~ 305 (447)
T cd01315 230 ---GCRLHIVHLSSA-EAVPLIREARAEGVDVTVETCPHYLTFTAEDVPDGGTEFKCAPPIRDAANQEQLWEALENGDID 305 (447)
T ss_pred ---CCCEEEEeCCCH-HHHHHHHHHHHCCCceEEEeccccEEEcHHHccCCCCceEECCCCCChHHHHHHHHHHhCCcee
Confidence 899999999999 9999999999999999999999999999988877788999999999999999999999999999
Q ss_pred EEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhhhccccCCCC
Q 015110 364 MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNM 412 (413)
Q Consensus 364 ~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~ 412 (413)
+|+|||+||+.++|..+..+|+.++.|++|+|+.+|++++ ..|++++|
T Consensus 306 ~i~SDh~p~~~~~k~~~~~~~~~~~~g~~g~~~~~~~~~~-~~~~~~~~ 353 (447)
T cd01315 306 MVVSDHSPCTPELKLLGKGDFFKAWGGISGLQLGLPVMLT-EAVNKRGL 353 (447)
T ss_pred EEeCCCCCCCHHHhccCCCChhhCCCCeeEHHHhHHHHHH-HHHHcCCC
Confidence 9999999999888864445788999999999999999984 57777766
No 12
>PRK02382 dihydroorotase; Provisional
Probab=100.00 E-value=1.4e-55 Score=439.59 Aligned_cols=341 Identities=32% Similarity=0.472 Sum_probs=284.3
Q ss_pred CcceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchHHH
Q 015110 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 121 (413)
Q Consensus 42 ~~~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~ 121 (413)
|.+++|+|++|++.....+++|+|+||+|++|++....+ ++.++||++|++|+|||||+|+|+..++....+++.+.
T Consensus 1 ~~dl~i~n~~v~~~~~~~~~~v~I~dg~I~~i~~~~~~~---~~~~~id~~g~~v~PG~ID~H~H~~~~g~~~~e~~~~~ 77 (443)
T PRK02382 1 MRDALLKDGRVYYNNSLQPRDVRIDGGKITAVGKDLDGS---SSEEVIDARGMLLLPGGIDVHVHFREPGYTHKETWYTG 77 (443)
T ss_pred CceEEEECCEEEeCCCceEEEEEEECCEEEEecCCCCCC---CCCeEEECCCCEEcCCEeeeeeeccCCCCCchhhHHHH
Confidence 458999999999876667899999999999997643211 24689999999999999999999988777777888899
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEE-EEeecCC
Q 015110 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGL-KSFMCPS 200 (413)
Q Consensus 122 ~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~i-k~~~~~~ 200 (413)
+++++++||||+++|+ ++.|.....+.+...++.+...+.+++.++++.. ...+++.++.+.|+.++ |+|+...
T Consensus 78 ~~aa~~gGvTtv~~~~-~t~p~~~~~~~~~~~~~~a~~~s~v~~~~~~~~~----~~~~~l~~l~~~gv~~~gkv~~~~~ 152 (443)
T PRK02382 78 SRSAAAGGVTTVVDQP-NTDPPTVDGESFDEKAELAARKSIVDFGINGGVT----GNWDPLESLWERGVFALGEIFMADS 152 (443)
T ss_pred HHHHHhCCcEEEEECC-CCCCCCChHHHHHHHHHHhCcCceEEEEEEeeec----cchhhHHHHHhcCccceeEEEEEec
Confidence 9999999999999999 7778777778888877776666778887765432 12456777787898888 8886432
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcc
Q 015110 201 GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTR 280 (413)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~ 280 (413)
. .. ...+++.+.++++.++++|+++.+|+++.+.+...... ..+......|+.++|..+|..++.+++.+++++
T Consensus 153 ~-~~-~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~---~~g~~~~~~~~~~~p~~~E~~av~~~~~la~~~- 226 (443)
T PRK02382 153 T-GG-MGIDEELFEEALAEAARLGVLATVHAEDEDLFDELAKL---LKGDADADAWSAYRPAAAEAAAVERALEVASET- 226 (443)
T ss_pred C-CC-cccCHHHHHHHHHHHHhcCCeEEEecCCHHHHHHhhHh---hcCCCCHhhCCCcCCHHHHHHHHHHHHHHHHHh-
Confidence 1 11 23577899999999999999999999998875433211 112334566788999999999999999999975
Q ss_pred cCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcC
Q 015110 281 TDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 360 (413)
Q Consensus 281 ~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G 360 (413)
|+++|++|+|+. +++++++++| |+||+|||||+|+++++...++.+|++||||++++|++||+++++|
T Consensus 227 ------g~~~hi~h~ss~-~~~~~i~~~~-----vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~g 294 (443)
T PRK02382 227 ------GARIHIAHISTP-EGVDAARREG-----ITCEVTPHHLFLSRRDWERLGTFGKMNPPLRSEKRREALWERLNDG 294 (443)
T ss_pred ------CCCEEEEECCCH-HHHHHHHHCC-----cEEEEchhhhhcCHHHHhccCceEEEcCCCCChHHHHHHHHHHhCC
Confidence 899999999999 9999999764 9999999999999998866778899999999999999999999999
Q ss_pred CccEEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhhhccccCCCCC
Q 015110 361 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNME 413 (413)
Q Consensus 361 ~i~~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~~ 413 (413)
+||+|+|||+||+.++|.. +|+.+|+|++|+|+++|++++ +|++++|.
T Consensus 295 ~i~~i~sDh~P~~~~~K~~---~~~~~~~G~~g~e~~~~~~~~--~~~~~~~~ 342 (443)
T PRK02382 295 TIDVVASDHAPHTREEKDA---DIWDAPSGVPGVETMLPLLLA--AVRKNRLP 342 (443)
T ss_pred CCCEEEcCCCCCCHHHhcC---ChhhCCCCcccHHHHHHHHHH--HHHcCCCC
Confidence 9999999999999888853 699999999999999999994 78888763
No 13
>PRK01211 dihydroorotase; Provisional
Probab=100.00 E-value=2.6e-55 Score=429.34 Aligned_cols=312 Identities=24% Similarity=0.346 Sum_probs=255.0
Q ss_pred EEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchHHHHHHHH
Q 015110 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAA 126 (413)
Q Consensus 47 i~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al 126 (413)
|+|. ++..+....++|+|+||||++|++.. .++++||++| +|+|||||+|+|++.++...+|++.+++++|+
T Consensus 3 ~~~~-~~~~~~~~~~di~I~dGkI~~i~~~~------~~~~~ida~g-~vlPG~ID~HvH~r~pg~~~ked~~s~s~AAa 74 (409)
T PRK01211 3 ICGN-FYYKGKFDYLEIEVEDGKIKSIKKDA------GNIGKKELKG-AILPAATDIHVHFRTPGETEKEDFSTGTLSAI 74 (409)
T ss_pred eece-eEEcCcEEEEEEEEECCEEEEecCCC------CCceEEEecc-EEcCCeEEeeeccCCCCCcccCcHHHHHHHHH
Confidence 4444 44444566799999999999998643 1457899999 89999999999999999989999999999999
Q ss_pred hCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecCCCCCCCC
Q 015110 127 AGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFP 206 (413)
Q Consensus 127 ~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~ 206 (413)
++||||+++|| |+.|...+.+.+..+++.+...+.++|+++.+....+ . ++.+.|+.++|.|+.+.......
T Consensus 75 aGGvTtv~dmP-nt~P~~~~~e~~~~~~~~a~~~s~vd~~~~~~~~~~~----~---~~~~~g~~~~k~f~~~~~~~~~~ 146 (409)
T PRK01211 75 FGGTTFIMDMP-NNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSMETGNN----A---LILDERSIGLKVYMGGTTNTNGT 146 (409)
T ss_pred cCCcEEEEECC-CCCCCCChHHHHHHHHHHhccCceeeEEEEeccCCch----h---hHHhccCcEEEEEcCCCcCCCcc
Confidence 99999999999 7888888899999998888877899999887654322 1 23345999999987542100000
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCC
Q 015110 207 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 286 (413)
Q Consensus 207 ~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~ 286 (413)
...+ ..++.+++.|+++.+|||+.+.+..+.+.. .....|+.+||..+|..++.+++.++++
T Consensus 147 ~~~~----~~l~~~~~~g~~v~~H~E~~~l~~~~~~~~------~~~~~~~~~rP~~aE~~ai~~~~~la~~-------- 208 (409)
T PRK01211 147 DIEG----GEIKKINEANIPVFFHAELSECLRKHQFES------KNLRDHDLARPIECEIKAVKYVKNLDLK-------- 208 (409)
T ss_pred ccCH----HHHHHHHccCCEEEEeccChHHhhhhhhCc------chHhhCCCCCCHHHHHHHHHHHHHHhCC--------
Confidence 1222 244667789999999999998865443321 1334578899999999999999999873
Q ss_pred CceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEEc
Q 015110 287 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 366 (413)
Q Consensus 287 g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~ 366 (413)
++|++|+|++ +++ .+||||||||||+|++++ .+++.+||+||||++++|++||++|++|+||+|+
T Consensus 209 --~~hi~HvSt~-~~~----------~~vt~Ev~phhL~l~~~~--~~~~~~kvnPPLRs~~d~~aL~~~l~dG~ID~i~ 273 (409)
T PRK01211 209 --TKIIAHVSSI-DVI----------GRFLREVTPHHLLLNDDM--PLGSYGKVNPPLRDRWTQERLLEEYISGRFDILS 273 (409)
T ss_pred --CcEEEEecCh-hhc----------CceEEEecHHHHcccccc--ccCCceeEcCCCCCHHHHHHHHHHHhCCCCCEEe
Confidence 4899999998 776 279999999999999887 3678999999999999999999999999999999
Q ss_pred CCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhhhccccCCCCC
Q 015110 367 SDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNME 413 (413)
Q Consensus 367 sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~~ 413 (413)
|||+||+.++|. +|+.+++|++|+|+++|++|+ +|++|+|.
T Consensus 274 SDHaP~~~~eK~----~~~~a~~G~~gle~~lpl~~~--~v~~~~is 314 (409)
T PRK01211 274 SDHAPHTEEDKQ----EFEYAKSGIIGVETRVPLFLA--LVKKKILP 314 (409)
T ss_pred CCCCCCChhHhC----CHhhCCCCCCcHHHHHHHHHH--HHHcCCCC
Confidence 999999988772 688999999999999999995 69998874
No 14
>PLN02942 dihydropyrimidinase
Probab=100.00 E-value=1.8e-54 Score=435.61 Aligned_cols=352 Identities=23% Similarity=0.302 Sum_probs=285.6
Q ss_pred CcceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCC--CCCccchH
Q 015110 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG--RTEWEGFP 119 (413)
Q Consensus 42 ~~~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~--~~~~e~~~ 119 (413)
+.+++|+|++|++++....++|+|+||+|++|++....+ .+.++||++|++|+|||||+|+|+.++. ....+++.
T Consensus 4 ~~~lli~~~~v~~~~~~~~~~i~I~~g~I~~i~~~~~~~---~~~~~iD~~g~~v~PG~ID~H~H~~~~~~~~~~~ed~~ 80 (486)
T PLN02942 4 STKILIKGGTVVNAHHQELADVYVEDGIIVAVAPNLKVP---DDVRVIDATGKFVMPGGIDPHTHLAMPFMGTETIDDFF 80 (486)
T ss_pred CCcEEEECcEEEcCCCCeEeEEEEECCEEEEEcCCCCCC---CCCeEEECCCCEEecCEeeeeeccCcccCCCcccchHH
Confidence 357899999999977666789999999999998753211 2568999999999999999999999873 45678999
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHH-cCCcEEEEeec
Q 015110 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLN-AGVLGLKSFMC 198 (413)
Q Consensus 120 ~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~G~~~ik~~~~ 198 (413)
+++++++++||||++||+ +.. .....+.++...+.+. +..++++++.+.........+++.++.+ .|+.++|.|+.
T Consensus 81 s~s~aAl~gGvTTv~D~~-~~~-~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~e~~~l~~~~gv~~~k~~~~ 157 (486)
T PLN02942 81 SGQAAALAGGTTMHIDFV-IPV-NGNLLAGYEAYEKKAE-KSCMDYGFHMAITKWDDTVSRDMETLVKEKGINSFKFFMA 157 (486)
T ss_pred HHHHHHHcCCCeEEEeCC-CCC-CCCHHHHHHHHHHHHh-hcCCCEEEEEEecCCcHhHHHHHHHHHHhCCCceEEEEEe
Confidence 999999999999999996 221 2223566666555554 4467888776544333233456777754 68889999987
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhh
Q 015110 199 PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 278 (413)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~ 278 (413)
+.+ ....+++.+.++++.++++|.++++|+|+.++.....++.. ..+..+...|+..||..+|..++.+++.+++.
T Consensus 158 ~~~---~~~~~~~~l~~~~~~a~~~~~~v~~HaE~~~~~~~~~~~~~-~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~ 233 (486)
T PLN02942 158 YKG---SLMVTDELLLEGFKRCKSLGALAMVHAENGDAVFEGQKRMI-ELGITGPEGHALSRPPLLEGEATARAIRLAKF 233 (486)
T ss_pred cCC---CCCCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHH-HcCCCChhhhhccCCchHHHHHHHHHHHHHHH
Confidence 643 12458899999999999999999999999887654443221 12233445677889999999999999999986
Q ss_pred cccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCC----CCcceEEcCCCCChhcHHHHH
Q 015110 279 TRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDAANKEKLW 354 (413)
Q Consensus 279 ~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~----~~~~~k~~Pplr~~~~~~~L~ 354 (413)
+ |+++|++|+|+. ++++.|+.+|++|+.|++|+|||||+|+++++.. .++.+||+||||++++|++||
T Consensus 234 ~-------g~~~~i~H~s~~-~~~e~i~~~k~~G~~Vt~e~~ph~L~l~~~~~~~~~~~~~~~~k~~PPlr~~~~~~~L~ 305 (486)
T PLN02942 234 V-------NTPLYVVHVMSI-DAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHGKALQ 305 (486)
T ss_pred h-------CCCEEEEECCCH-HHHHHHHHHHHCCCcEEEEECchhheeCHHHhcCcccccCcceEECCCCCCHHHHHHHH
Confidence 5 899999999999 9999999999999999999999999999887753 578899999999999999999
Q ss_pred HHHhcCCccEEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhhhccccCCCC
Q 015110 355 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNM 412 (413)
Q Consensus 355 ~~l~~G~i~~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~ 412 (413)
+++++|++|+|||||+||+.++|..+.++|+.+++|++|+|+.+|++| .+.|++|+|
T Consensus 306 ~~l~~G~i~~igTDh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l~~~~-~~~~~~~~i 362 (486)
T PLN02942 306 AALSSGILQLVGTDHCPFNSTQKAFGKDDFRKIPNGVNGIEERMHLVW-DTMVESGQI 362 (486)
T ss_pred HHhcCCceEEEECCCCCCChHHhhcccCCHhhCCCCcccHHHHHHHHH-HHHHHcCCC
Confidence 999999999999999999988886444578999999999999999998 467777765
No 15
>PRK09060 dihydroorotase; Validated
Probab=100.00 E-value=2.2e-54 Score=430.26 Aligned_cols=339 Identities=29% Similarity=0.455 Sum_probs=277.3
Q ss_pred cceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchHHHH
Q 015110 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 122 (413)
Q Consensus 43 ~~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~ 122 (413)
++++|+|++|+++++...++|+|+||+|++|++.... ++.++||++|++|+|||||+|+|+..++....+++.+.+
T Consensus 5 ~d~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~~----~~~~~iD~~G~~v~PG~ID~HvH~~~~~~~~~e~~~t~~ 80 (444)
T PRK09060 5 FDLILKGGTVVNPDGEGRADIGIRDGRIAAIGDLSGA----SAGEVIDCRGLHVLPGVIDSQVHFREPGLEHKEDLETGS 80 (444)
T ss_pred CcEEEECCEEECCCCCeeeEEEEECCEEEEecCCCCC----CCceEEECCCCEEccCEEeccccccCCCCCccchHHHHH
Confidence 4789999999998877788999999999999864321 246899999999999999999999887777788999999
Q ss_pred HHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHH-HcCCcEEEEeecCCC
Q 015110 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL-NAGVLGLKSFMCPSG 201 (413)
Q Consensus 123 ~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~G~~~ik~~~~~~~ 201 (413)
++++++||||+++|| ++.|...+.+.+...++.+.....+++.++++....+. +++.++. ..|+.++|.||....
T Consensus 81 ~aa~~gGvTtv~~~p-~~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~---~~l~el~~~~gv~g~k~fm~~~~ 156 (444)
T PRK09060 81 RAAVLGGVTAVFEMP-NTNPLTTTAEALADKLARARHRMHCDFAFYVGGTRDNA---DELAELERLPGCAGIKVFMGSST 156 (444)
T ss_pred HHHHhCCcEEEEECC-CCCCCCChHHHHHHHHHHhcccceeeEEEEeccCCCCH---HHHHHHHhhcCceEEEEEeccCC
Confidence 999999999999999 77777788888888887777667889988765543332 3344432 248899999885421
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhccc
Q 015110 202 INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRT 281 (413)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~ 281 (413)
......+...+.++++. .|+++.+|+|+.+.+... .... +.+ ....|..+||+.+|..++++++.+++.+
T Consensus 157 -~~~~~~d~~~l~~~~~~---~~~~v~~H~E~~~l~~~~-~~~~-~~g--~~~~~~~~~p~~aE~~av~~~~~la~~~-- 226 (444)
T PRK09060 157 -GDLLVEDDEGLRRILRN---GRRRAAFHSEDEYRLRER-KGLR-VEG--DPSSHPVWRDEEAALLATRRLVRLARET-- 226 (444)
T ss_pred -CCcccCCHHHHHHHHHh---CCCeEEEECCCHHHHHHH-HHHH-hcC--CcccccccCCHHHHHHHHHHHHHHHHHH--
Confidence 11223456667776644 488999999998875422 1100 112 4556788999999999999999999975
Q ss_pred CCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEcccccccccccc-CCCCCcceEEcCCCCChhcHHHHHHHHhcC
Q 015110 282 DGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE-IPDGDTRFKCAPPIRDAANKEKLWEALMDG 360 (413)
Q Consensus 282 ~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~-~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G 360 (413)
|+|+|++|+|+. +++++++.+|+ .|+||+|||||+|++++ +..+++.+|++||||+++++++||+++++|
T Consensus 227 -----~~~lhi~h~st~-~~v~~i~~~~~---~vt~ev~ph~l~l~~~~~~~~~~~~~k~~PPlr~~~~~~~l~~al~~G 297 (444)
T PRK09060 227 -----GRRIHVLHVSTA-EEIDFLADHKD---VATVEVTPHHLTLAAPECYERLGTLAQMNPPIRDARHRDGLWRGVRQG 297 (444)
T ss_pred -----CCCEEEEeCCCH-HHHHHHHHhCC---CeEEEeChHHhccCchhhcccCCceEEEeCCCCCHHHHHHHHHHHhCC
Confidence 999999999999 99999998875 39999999999999887 666788999999999999999999999999
Q ss_pred CccEEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhhhccccCCCCC
Q 015110 361 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNME 413 (413)
Q Consensus 361 ~i~~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~~ 413 (413)
+||+++|||+||+.++|.. +|+.+++|++|+|+++|++++ .|++|+|.
T Consensus 298 ~id~i~sDh~p~~~~~k~~---~~~~~~~G~~g~e~~~~l~~~--~v~~g~l~ 345 (444)
T PRK09060 298 VVDVLGSDHAPHTLEEKAK---PYPASPSGMTGVQTLVPIMLD--HVNAGRLS 345 (444)
T ss_pred CccEEecCCCCCCHHHhcC---CcccCCCCcccHHHHHHHHHH--HHHcCCCC
Confidence 9999999999999888853 688999999999999999995 58888763
No 16
>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.4e-55 Score=405.89 Aligned_cols=356 Identities=26% Similarity=0.346 Sum_probs=313.0
Q ss_pred CCcceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCC--CCCCccch
Q 015110 41 PYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGF 118 (413)
Q Consensus 41 ~~~~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~--~~~~~e~~ 118 (413)
....++|+||+|++.+....+||+++||.|.+|+++...+ .+.++||++|++|+||.||.|+|+.++ +...+++|
T Consensus 12 ~s~rllikgg~vvN~d~~~~aDV~vedGiI~~vg~~l~ip---gg~~~ida~g~~ViPGgID~Hthlq~p~~G~ts~DdF 88 (522)
T KOG2584|consen 12 ASNRLLIKGGRVVNDDQSFKADVYVEDGIIKEVGENLIIP---GGVKVIDATGKMVIPGGIDPHTHLQMPFMGMTSVDDF 88 (522)
T ss_pred cccceeeeCCEEEccCCceeeeEEeccCEEEEecccEEcC---CCceEEecCCcEEecCccCccceeccccCCccchhhh
Confidence 3458999999999998888999999999999999987654 478999999999999999999999998 77889999
Q ss_pred HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHH-HcCCcEEEEee
Q 015110 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL-NAGVLGLKSFM 197 (413)
Q Consensus 119 ~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~G~~~ik~~~ 197 (413)
..++++|+++|+|+++|+..+. +.....+.++.++..+..+..+||++|++++.......++++-+. +.|+.+|++||
T Consensus 89 ~~GTkAAlaGGtTmiID~vlp~-~~~slv~afe~wr~~Ad~k~cCDyglhv~It~W~~~v~eem~~l~~ekGvnsF~~fm 167 (522)
T KOG2584|consen 89 FQGTKAALAGGTTMIIDFVLPD-KGTSLVEAFEKWREWADPKVCCDYGLHVGITWWSPSVKEEMEILVKEKGVNSFKFFM 167 (522)
T ss_pred hcccHHHhcCCceEEEEEecCC-CCchHHHHHHHHHhhcCCceeeeeeeeEeeeecCcchHHHHHHHhhhcCcceEEeee
Confidence 9999999999999999998543 345667889999888888999999999999876666667777666 47999999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHh
Q 015110 198 CPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAK 277 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~ 277 (413)
.+.+ .+.+++++|+++++.++++|...++|+|+.+.+.++..+.. +.+....+.|..+||+..|.+++.+++.+|+
T Consensus 168 ayk~---~~~v~d~~lye~l~~~~~lgala~vHAEngd~iae~q~~~l-~~gitgPEgh~lSRPee~EaEA~~rai~ia~ 243 (522)
T KOG2584|consen 168 AYKD---LYMVRDSELYEALKVCAELGALAMVHAENGDAIAEGQQRLL-ELGITGPEGHELSRPEELEAEATNRAITIAR 243 (522)
T ss_pred eecc---ccccCHHHHHHHHHHHhhcchhheehhhcchhhhhhhhHHH-HcCCcCcccccccCchhhhHHHHHHHHHHHH
Confidence 8863 46789999999999999999999999999998765554443 3445556678899999999999999999999
Q ss_pred hcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCC----CCcceEEcCCCCChh-cHHH
Q 015110 278 DTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDAA-NKEK 352 (413)
Q Consensus 278 ~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~----~~~~~k~~Pplr~~~-~~~~ 352 (413)
+. ++|++++|+.+. .+.++|..+|++|.-|..|.....|.++...+.. ....|+++||||... ..+.
T Consensus 244 ~~-------ncPlyvvhVmsk-saa~~Ia~aRk~g~~v~gepita~l~~dg~hy~~~~w~~Aa~~v~sPPlr~d~~t~~~ 315 (522)
T KOG2584|consen 244 QA-------NCPLYVVHVMSK-SAADAIALARKKGRVVFGEPITASLGTDGSHYWSKDWDHAAAFVTSPPLRPDPTTPDG 315 (522)
T ss_pred hc-------CCCcceEEEeeh-hHHHHHHHHHhcCceeecccchhhhcccchhhccCChhhcceeeeCCCCCCCCCCHHH
Confidence 75 899999999999 8999999999999999999888778777665432 246789999999775 9999
Q ss_pred HHHHHhcCCccEEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhhhccccCCCCC
Q 015110 353 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNME 413 (413)
Q Consensus 353 L~~~l~~G~i~~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~~ 413 (413)
||++|+.|.+...+|||||++.++|.+++++|.+.|.|+.|+|.+|+++| ++||..|+||
T Consensus 316 L~~lLa~g~L~~tgSdhctf~~~qKalgKddFt~ip~GvnGvedrMsviw-ekgv~~G~md 375 (522)
T KOG2584|consen 316 LMDLLAEGDLQLTGSDHCTFTTEQKALGKDDFTKIPNGVNGVEDRMSVIW-EKGVHSGKMD 375 (522)
T ss_pred HHHHHhcCccceeecCCCCCCHHHHhhccCccccCCCccccccccceeee-ehhcccCccC
Confidence 99999999999999999999999999999999999999999999999999 7999999997
No 17
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=100.00 E-value=5.1e-54 Score=424.50 Aligned_cols=326 Identities=34% Similarity=0.484 Sum_probs=275.5
Q ss_pred ceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchHHHHHHHHhCCceEEEeCC
Q 015110 58 VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMP 137 (413)
Q Consensus 58 ~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~ 137 (413)
..+++|+|+||||++|++.. .+ .+.++||++|++|+|||||+|+|+..++....+++.+.++.++++||||+++++
T Consensus 3 ~~~~~v~I~~g~I~~i~~~~-~~---~~~~~ida~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~ 78 (411)
T TIGR00857 3 ETEVDILVEGGRIKKIGKLR-IP---PDAEVIDAKGLLVLPGFIDLHVHLRDPGEEYKEDIESGSKAAAHGGFTTVADMP 78 (411)
T ss_pred eEEEEEEEECCEEEEeeccC-CC---CCCeEEECCCCEEecCEEEcccCCCCCCCccHhHHHHHHHHHHhCCeEEEEEec
Confidence 35789999999999997422 11 245789999999999999999999865555667888899999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCch-hhHHHHHHHHHcCCcE--EEEeecCCCCCCCCCCCHHHHH
Q 015110 138 LNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA-YNASALEALLNAGVLG--LKSFMCPSGINDFPMTNASHIK 214 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~G~~~--ik~~~~~~~~~~~~~~~~~~l~ 214 (413)
++.|.....+.+....+.++....+++.+++++..... +..+++.++.+.|+.+ ++.+ ..+..+++.+.
T Consensus 79 -~t~p~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~~~Gv~g~~f~~~-------~~~~~~~~~l~ 150 (411)
T TIGR00857 79 -NTKPPIDTPETLEWKLQRLKKVSLVDVHLYGGVTQGNQGKELTEAYELKEAGAVGRMFTDD-------GSEVQDILSMR 150 (411)
T ss_pred -CCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEecCCccccHHHHHHHHHCCcEEEEEEeC-------CcccCCHHHHH
Confidence 66777777888888887777777889998887765432 2366777888889988 4432 12346888999
Q ss_pred HHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEc
Q 015110 215 EGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVH 294 (413)
Q Consensus 215 ~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H 294 (413)
++++.++++|+++.+|+|+.+.+....... +..+...|+.+||+.+|..++.+++.+++.+ ++++||+|
T Consensus 151 ~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~----g~~~~~~~~~~~p~~aE~~ai~~~~~la~~~-------~~~~~i~H 219 (411)
T TIGR00857 151 RALEYAAIAGVPIALHAEDPDLIYGGVMHE----GPSAAQLGLPARPPEAEEVAVARLLELAKHA-------GCPVHICH 219 (411)
T ss_pred HHHHHHHHcCCEEEEecCCHHHHhhhhhcC----CcccHhhCCCCCCHHHHHHHHHHHHHHHHHH-------CCCEEEEe
Confidence 999999999999999999998766544322 3345667889999999999999999999975 89999999
Q ss_pred cCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEEcCCCCCCCh
Q 015110 295 LSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVP 374 (413)
Q Consensus 295 ~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p~~~ 374 (413)
+|+. +++++|+.+|++|++|+||||||||+|+++++...++.+|++||||++++|++||+++++|.+|+|+|||+||+.
T Consensus 220 vs~~-~~l~~i~~a~~~g~~v~~ev~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~g~i~~i~sDh~p~~~ 298 (411)
T TIGR00857 220 ISTK-ESLELIVKAKSQGIKITAEVTPHHLLLSEEDVARLDGNGKVNPPLREKEDRLALIEGLKDGIIDIIATDHAPHTL 298 (411)
T ss_pred CCCH-HHHHHHHHHHHcCCcEEEeechhhheecHHHHhCCCccEEEcCCCCCHHHHHHHHHHHhcCCCcEEEcCCCCCCh
Confidence 9999 999999999999999999999999999999887778899999999999999999999999999999999999998
Q ss_pred hhhccCCCCccccCCCcchHhHHHHHHhhhccccCCCC
Q 015110 375 ELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNM 412 (413)
Q Consensus 375 ~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~ 412 (413)
++|. .+|+.+++|++|+|+.+|++|. .++++++
T Consensus 299 ~~k~---~~~~~~~~G~~g~e~~~~~~~~--~~~~~~~ 331 (411)
T TIGR00857 299 EEKT---KEFAAAPPGIPGLETALPLLLQ--LLVKGLI 331 (411)
T ss_pred HHcc---CCHhhCCCCceeHHHHHHHHHH--HHHhCCC
Confidence 8874 3688999999999999999984 4555544
No 18
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=100.00 E-value=7.8e-54 Score=429.13 Aligned_cols=352 Identities=27% Similarity=0.400 Sum_probs=289.3
Q ss_pred eEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCC--CCccchHHHH
Q 015110 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR--TEWEGFPSGT 122 (413)
Q Consensus 45 lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~--~~~e~~~~~~ 122 (413)
++|+|++|+++++..+++|+|+||||++|++....+ .+.++||++|++|||||||+|+|+..+.. ..+++++..+
T Consensus 1 lli~~~~v~~~~~~~~~~i~I~~g~I~~ig~~~~~~---~~~~viD~~g~~vlPGlID~H~H~~~~~~~~~~~e~~~~~~ 77 (447)
T cd01314 1 LIIKNGTIVTADGSFKADILIEDGKIVAIGPNLEAP---GGVEVIDATGKYVLPGGIDPHTHLELPFMGTVTADDFESGT 77 (447)
T ss_pred CEEECCEEECCCCceeeeEEEECCEEEEeeCCCCCC---CCceEEECCCCEEecCEEeccccccccccCccCcchHHHHH
Confidence 479999999988777899999999999998753221 24689999999999999999999987643 4578889999
Q ss_pred HHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecCCCC
Q 015110 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI 202 (413)
Q Consensus 123 ~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~ 202 (413)
++++++||||++||+ ++.|.....+.++...+.......++++++........+.+++++++.+.|+.++|.+++++.
T Consensus 78 ~~a~~~GvTtv~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~g~~~ik~~~~~~~- 155 (447)
T cd01314 78 RAAAAGGTTTIIDFA-IPNKGQSLLEAVEKWRGKADGKSVIDYGFHMIITDWTDSVIEELPELVKKGISSFKVFMAYKG- 155 (447)
T ss_pred HHHHhCCCcEEEeCC-CCCCCCCHHHHHHHHHHHhcCCCcccEEEEEeecCCChHHHHHHHHHHHcCCCEEEEEeccCC-
Confidence 999999999999998 555545566777766665555567777766554433344567788888889999999887642
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccC
Q 015110 203 NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTD 282 (413)
Q Consensus 203 ~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~ 282 (413)
...++.+.+++++++|+++|+++++|+|+...+.....+.. ..+......|...+|..+|..++.+++.+++.+
T Consensus 156 --~~~~s~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~-~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~--- 229 (447)
T cd01314 156 --LLMVDDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLL-AQGKTGPEYHALSRPPEVEAEATARAIRLAELA--- 229 (447)
T ss_pred --CCCCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHH-HcCCCChHHhhhcCCHHHHHHHHHHHHHHHHHh---
Confidence 23568999999999999999999999998877654433210 112334456778899999999999999999864
Q ss_pred CCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCC---CCCcceEEcCCCCChhcHHHHHHHHhc
Q 015110 283 GPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP---DGDTRFKCAPPIRDAANKEKLWEALMD 359 (413)
Q Consensus 283 ~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~---~~~~~~k~~Pplr~~~~~~~L~~~l~~ 359 (413)
+.|+|++|+|+. +++++|+.+|++|+.|+|++|||||+++++++. ..|+.+|++||||+++++++||+++++
T Consensus 230 ----~~~~~~~H~s~~-~~~~~i~~~k~~g~~v~~~~~ph~l~~~~~~~~~~~~~g~~~~~~pplr~~~~~~~l~~~l~~ 304 (447)
T cd01314 230 ----GAPLYIVHVSSK-EAADEIARARKKGLPVYGETCPQYLLLDDSDYWKDWFEGAKYVCSPPLRPKEDQEALWDGLSS 304 (447)
T ss_pred ----CCCEEEEeCCCH-HHHHHHHHHHHCCCeEEEecCchhheeCHHHhccccccccceEECCCCCChHHHHHHHHHHhC
Confidence 899999999999 999999999999999999999999999988772 257889999999999999999999999
Q ss_pred CCccEEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhhhccccCCCCC
Q 015110 360 GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNME 413 (413)
Q Consensus 360 G~i~~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~~ 413 (413)
|++|+|||||+||+.+.|.....+|+.+++|++|+|+++|++| +++|++|+|+
T Consensus 305 G~i~~igsDh~~~~~~~k~~~~~~~~~~~~G~~g~e~~l~~l~-~~~~~~~~~~ 357 (447)
T cd01314 305 GTLQTVGSDHCPFNFAQKARGKDDFTKIPNGVPGVETRMPLLW-SEGVAKGRIT 357 (447)
T ss_pred CCeeEEECCCCCCCHHHhhcccCCHhhCCCCCchHhhhHHHHH-HHHHHcCCCC
Confidence 9999999999999988775433578899999999999999999 5788877663
No 19
>PRK08323 phenylhydantoinase; Validated
Probab=100.00 E-value=1.3e-53 Score=429.16 Aligned_cols=348 Identities=28% Similarity=0.415 Sum_probs=288.5
Q ss_pred ceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCC--CCCccchHHH
Q 015110 44 QYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG--RTEWEGFPSG 121 (413)
Q Consensus 44 ~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~--~~~~e~~~~~ 121 (413)
+++|+|++|+++++..+++|+|+||||++|++. . +.++||++|++|+|||||+|+|+..+. ....++++..
T Consensus 2 d~li~n~~v~~~~~~~~~~v~I~~g~I~~i~~~---~----~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~e~~~~~ 74 (459)
T PRK08323 2 STLIKNGTVVTADDTYKADVLIEDGKIAAIGAN---L----GDEVIDATGKYVMPGGIDPHTHMEMPFGGTVSSDDFETG 74 (459)
T ss_pred cEEEECCEEEcCCCceEEEEEEECCEEEEEecC---C----CceEEECCCCEEeccEEeeeeccccccCCccccCcHHHH
Confidence 689999999998877789999999999999864 1 457999999999999999999998653 3457888889
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecCCC
Q 015110 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG 201 (413)
Q Consensus 122 ~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~ 201 (413)
++.++++||||+++|+ ++.|.....+.++...+.......++++++........+.+++++++++.|+.++|.++.+.+
T Consensus 75 ~~~a~~~GvTt~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~ 153 (459)
T PRK08323 75 TRAAACGGTTTIIDFA-LQPKGQSLREALEAWHGKAAGKAVIDYGFHMIITDWNEVVLDEMPELVEEGITSFKLFMAYKG 153 (459)
T ss_pred HHHHHhCCCCEEEeCc-CCCCCCChHHHHHHHHHHhccCceEEEEEEEEecCCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 9999999999999998 555555566677776666556677888776544333344567888888899999999886542
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhccc
Q 015110 202 INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRT 281 (413)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~ 281 (413)
.+..+.++++++++.|+++|+++++|+|+.+.+.....+.. ..+......|...+|..+|..++.+++++++.+
T Consensus 154 ---~~~~s~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~-~~g~~~~~~~~~~~p~~~e~~~v~~~~~~a~~~-- 227 (459)
T PRK08323 154 ---ALMLDDDELLRALQRAAELGALPMVHAENGDAIAYLQAKLL-AEGKTGPEYHALSRPPEVEGEATNRAIMLAELA-- 227 (459)
T ss_pred ---CCCCCHHHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHHH-HcCCCChhhhhccCCHHHHHHHHHHHHHHHHHh--
Confidence 24678999999999999999999999998876553332211 223444556788899999999999999999875
Q ss_pred CCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCC----CCcceEEcCCCCChhcHHHHHHHH
Q 015110 282 DGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDAANKEKLWEAL 357 (413)
Q Consensus 282 ~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~----~~~~~k~~Pplr~~~~~~~L~~~l 357 (413)
|+|+|++|+|+. +++++|+.+|++|+.|+||+|||||+|+++++.. .|..+|++||||+++++++||+++
T Consensus 228 -----~~~~~i~H~s~~-~~~~~i~~ak~~g~~vt~e~~p~~l~l~~~~~~~~~~~~g~~~k~~pPlr~~~~~~~l~~~l 301 (459)
T PRK08323 228 -----GAPLYIVHVSCK-EALEAIRRARARGQRVFGETCPQYLLLDESEYDGPDWFEGAKYVMSPPLRDKEHQDALWRGL 301 (459)
T ss_pred -----CCCEEEEeCCCH-HHHHHHHHHHHCCCeEEEEcCccceeecHHHhcCCccccccceEECCCCCChHHHHHHHHHh
Confidence 899999999998 9999999999999999999999999999987754 367899999999999999999999
Q ss_pred hcCCccEEcCCCCCCChhhhc-cCCCCccccCCCcchHhHHHHHHhhhccccCCCC
Q 015110 358 MDGHIDMLSSDHSPTVPELKL-LDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNM 412 (413)
Q Consensus 358 ~~G~i~~i~sDh~p~~~~~k~-~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~ 412 (413)
++|.+|+|+|||+||+.++|. .+.++|+.+|+|++|+|+.+|+++ +++++++++
T Consensus 302 ~~G~i~~i~sDh~p~~~~~~~~~~~~~~~~~p~G~~~~e~~~~~l~-~~~~~~~~~ 356 (459)
T PRK08323 302 QDGDLQVVATDHCPFCFEQKKQLGRGDFTKIPNGTPGVEDRMPLLF-SEGVMTGRI 356 (459)
T ss_pred hcCCeeEEECCCCCCChHHhcccccCCHhhCCCCcchHhhhHHHHH-HHHHHcCCC
Confidence 999999999999999987764 233578899999999999999999 467777765
No 20
>PRK07575 dihydroorotase; Provisional
Probab=100.00 E-value=1.6e-53 Score=423.72 Aligned_cols=340 Identities=27% Similarity=0.418 Sum_probs=274.9
Q ss_pred CcceEEEccEEEcCCC-ceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchHH
Q 015110 42 YNQYWLTSKRIVTPKG-VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 120 (413)
Q Consensus 42 ~~~lli~n~~vi~~~~-~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~ 120 (413)
|++++|+|++|+++++ ..+++|.|+||||++|++....+ .+.++||++|++|+|||||+|+|+..++..+++++++
T Consensus 2 ~~~~~i~~~~i~~~~~~~~~~~I~I~dg~I~~ig~~~~~~---~~~~vid~~g~~v~PG~ID~H~H~~~~~~~~~e~~~~ 78 (438)
T PRK07575 2 MMSLLIRNARILLPSGELLLGDVLVEDGKIVAIAPEISAT---AVDTVIDAEGLTLLPGVIDPQVHFREPGLEHKEDLFT 78 (438)
T ss_pred cceEEEECCEEECCCCCEEeeeEEEECCEEEEecCCCCCC---CCCeEEECCCCEEcccEEEeeeccCCCCCcCcchHHH
Confidence 3578999999998766 45789999999999998753211 1357899999999999999999998877778899999
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecCC
Q 015110 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPS 200 (413)
Q Consensus 121 ~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~ 200 (413)
.+++++++||||++||| ++.|...+.+.+...++.+.....++++++.+..+. ..+++..+ .|+.++|.|+...
T Consensus 79 ~~~aa~~gGvTt~~dmp-~~~p~~~~~~~~~~~~~~a~~~~~v~~~~~~~~~~~---~l~~l~~~--~~~~g~~~f~~~~ 152 (438)
T PRK07575 79 ASRACAKGGVTSFLEMP-NTKPLTTTQAALDDKLARAAEKCVVNYGFFIGATPD---NLPELLTA--NPTCGIKIFMGSS 152 (438)
T ss_pred HHHHHHhCCEEEEEECC-CCCCCCCcHHHHHHHHHHhccCcEEEEEEEcccccc---CHHHHHHh--hCCeEEEEEEeeC
Confidence 99999999999999999 777888888899888888777788999988766532 23344332 3677889886432
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcc
Q 015110 201 GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTR 280 (413)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~ 280 (413)
. ...+..+...+++++ ++.|.++.+|+|+.+.+...... ..+......|+..+|+.+|..++.+++++++++
T Consensus 153 ~-~~~~~~~~~~~~~~~---~~~~~~v~~h~e~~~l~~~~~~~---~~g~~~~~~~~~~~p~~aE~~av~~~~~la~~~- 224 (438)
T PRK07575 153 H-GPLLVDEEAALERIF---AEGTRLIAVHAEDQARIRARRAE---FAGISDPADHSQIQDEEAALLATRLALKLSKKY- 224 (438)
T ss_pred C-CCcccCcHHHHHHHH---HhCCCEEEEeCcChHHHHhhhHh---hccCcCcccccccCcHHHHHHHHHHHHHHHHHH-
Confidence 1 111122344445443 35799999999998864322211 123335566778899999999999999999975
Q ss_pred cCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcC
Q 015110 281 TDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 360 (413)
Q Consensus 281 ~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G 360 (413)
|+++|++|+|++ +++++++++| +..|+||||||||+|+++++...++.+|++||||++++|++||+++++|
T Consensus 225 ------g~~lhi~HiSt~-~~v~~i~~~k--~~~vt~ev~phhL~l~~~~~~~~~~~~k~~PPLR~~~d~~~L~~~l~~G 295 (438)
T PRK07575 225 ------QRRLHILHLSTA-IEAELLRQDK--PSWVTAEVTPQHLLLNTDAYERIGTLAQMNPPLRSPEDNEALWQALRDG 295 (438)
T ss_pred ------CCCEEEEECCCH-HHHHHHHHhc--CCCEEEEEchhhheeCHHHHhCCCceEEEeCCCCCHHHHHHHHHHHhCC
Confidence 899999999999 9999999887 4689999999999999998876788999999999999999999999999
Q ss_pred CccEEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhhhccccCCCC
Q 015110 361 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNM 412 (413)
Q Consensus 361 ~i~~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~ 412 (413)
++|+|+|||+||+.++|. .+|+.+++|++|+|+.+|++|+ + +.+++|
T Consensus 296 ~id~i~sDh~p~~~~~k~---~~~~~~~~G~~g~e~~l~~l~~-~-~~~~~l 342 (438)
T PRK07575 296 VIDFIATDHAPHTLEEKA---QPYPNSPSGMPGVETSLPLMLT-A-AMRGKC 342 (438)
T ss_pred CCCEEecCCCCCCHHHcc---CCcccCCCCcccHHHHHHHHHH-H-HhcCCC
Confidence 999999999999988885 3688999999999999999995 4 456665
No 21
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=100.00 E-value=8.8e-53 Score=422.71 Aligned_cols=351 Identities=28% Similarity=0.411 Sum_probs=283.3
Q ss_pred eEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCC--CCCCccchHHHH
Q 015110 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSGT 122 (413)
Q Consensus 45 lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~--~~~~~e~~~~~~ 122 (413)
++|+|++|+++++..+++|+|+||+|++|++....+ ++.++||++|++|+|||||+|+|+..+ +...+++++.++
T Consensus 1 ~li~n~~vv~~~~~~~~~V~I~dg~I~~Ig~~~~~~---~~~~vIDa~G~~vlPGlID~H~H~~~~~~~~~~~e~~~~~s 77 (454)
T TIGR02033 1 KLIRGGTVVNADDVFQADVLIEGGKIVAVGRNLSPP---DAVEEIDATGKYVMPGGIDVHTHLEMPFGGTVTADDFFTGT 77 (454)
T ss_pred CEEECcEEEcCCCceEEEEEEECCEEEEecCCCCCC---CCCcEEECCCCEEecCEecceeccCcccCCCCCcchHHHHH
Confidence 479999999987777899999999999998753221 245899999999999999999999876 345678888899
Q ss_pred HHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHH-HHHHHHcCCcEEEEeecCCC
Q 015110 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA-LEALLNAGVLGLKSFMCPSG 201 (413)
Q Consensus 123 ~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~G~~~ik~~~~~~~ 201 (413)
++++++||||++||+ ++.|.....+.++...+...+...++++++........+..++ ++.+.+.|+..+|.+++++.
T Consensus 78 ~~a~~~GvTtv~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~ 156 (454)
T TIGR02033 78 KAAAAGGTTTIIDFA-LPHKGESLTEALETWHEKAEGKSVIDYGFHMMITHWNDEVLEEHIPELVEEGITSFKVFMAYKN 156 (454)
T ss_pred HHHHhCCCCEEEeCc-CCCCCCCHHHHHHHHHHHhccCceEEEEEEecccCCcHHHHHHHHHHHHhcCCcEEEEEeecCC
Confidence 999999999999998 5555555667777766665555677777664432222233344 55556688889999886642
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhccc
Q 015110 202 INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRT 281 (413)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~ 281 (413)
.+.++.++++++++.|+++|+++++|+|+........++.. +.+......|...+|..+|..++.+++.+++.+
T Consensus 157 ---~~~~~~~~l~~~~~~a~~~~~~v~~H~E~~~~~~~~~~~~~-~~G~~~~~~~~~~~p~~~e~~~v~~~~~~~~~~-- 230 (454)
T TIGR02033 157 ---LLMVDDEELFEILKRAKELGALLQVHAENGDVIAELQARLL-AQGKTGPEYHALSRPPESEAEAVARAIALAALA-- 230 (454)
T ss_pred ---CCCCCHHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHH-HcCCCChhHhhhcCCHHHHHHHHHHHHHHHHHh--
Confidence 24578999999999999999999999998876543333211 123344456778899999999999999999864
Q ss_pred CCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCC---CCcceEEcCCCCChhcHHHHHHHHh
Q 015110 282 DGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD---GDTRFKCAPPIRDAANKEKLWEALM 358 (413)
Q Consensus 282 ~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~---~~~~~k~~Pplr~~~~~~~L~~~l~ 358 (413)
+.++|++|+|+. ++++.|+.+|++|+.|+|++|||||+++.+++.. .+..+|++||||++++|++||++++
T Consensus 231 -----~~~~~i~H~s~~-~~~~~i~~~~~~g~~vt~e~~p~~l~~~~~~~~~~~~~~~~~~~~pPlr~~~~~~~l~~~l~ 304 (454)
T TIGR02033 231 -----NAPLYVVHVSTA-SAVDEIAEAREKGQPVYGETCPQYLLLDDTIYDKPGFEGAKYVCSPPLREKEDQDALWSALS 304 (454)
T ss_pred -----CCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEcCchheeecHHHhcCcccccceeEECCCCCChhhHHHHHHHhh
Confidence 899999999998 8999999999999999999999999999888753 4678899999999999999999999
Q ss_pred cCCccEEcCCCCCCChhhhc-cCCCCccccCCCcchHhHHHHHHhhhccccCCCC
Q 015110 359 DGHIDMLSSDHSPTVPELKL-LDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNM 412 (413)
Q Consensus 359 ~G~i~~i~sDh~p~~~~~k~-~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~ 412 (413)
+|.+|+|||||+||+.++|. ..++.|+.+++|++|+|+.+|++| +++|+++++
T Consensus 305 ~G~i~~igtDh~p~~~~~k~~~~~~~~~~~~~G~~g~e~~l~~l~-~~~v~~~~~ 358 (454)
T TIGR02033 305 SGALQTVGSDHCPFNFAQKKAIGKDDFTKIPNGGPGVEERMTLLF-DEGVATGRI 358 (454)
T ss_pred cCCeEEEECCCCCCCHHHhhhcccCCHhhCCCCCchHHhHHHHHH-HHHHHcCCC
Confidence 99999999999999977762 113468889999999999999999 578887765
No 22
>PRK09357 pyrC dihydroorotase; Validated
Probab=100.00 E-value=2.7e-52 Score=414.94 Aligned_cols=341 Identities=31% Similarity=0.447 Sum_probs=282.3
Q ss_pred ceEEEccEEEcCCC-ceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchHHHH
Q 015110 44 QYWLTSKRIVTPKG-VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 122 (413)
Q Consensus 44 ~lli~n~~vi~~~~-~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~ 122 (413)
+++|+|++|+++++ ..+++|.|+||+|++|++... + ++.++||++|++|+|||||+|+|++.++....+++...+
T Consensus 2 ~~~i~~~~v~~~~~~~~~~~I~I~dg~I~~i~~~~~-~---~~~~~iD~~g~~v~PG~ID~H~H~~~~~~~~~e~~~~~~ 77 (423)
T PRK09357 2 MILIKNGRVIDPKGLDEVADVLIDDGKIAAIGENIE-A---EGAEVIDATGLVVAPGLVDLHVHLREPGQEDKETIETGS 77 (423)
T ss_pred cEEEEeEEEECCCCCcceeeEEEECCEEEEeeCCCC-C---CCCeEEECCCCEEeCCEEecccccCCCCccccccHHHHH
Confidence 58999999998754 457899999999999986421 1 356899999999999999999999877666778999999
Q ss_pred HHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCC-chhhHHHHHHHHHcCCcEEEEeecCCC
Q 015110 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-NAYNASALEALLNAGVLGLKSFMCPSG 201 (413)
Q Consensus 123 ~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~G~~~ik~~~~~~~ 201 (413)
+.++++||||+++|+ ++.|.....+.++...+.+...+..++.+++.+... ..+..+++.++.+.|+.+++..
T Consensus 78 ~~a~~~GvTt~~d~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~----- 151 (423)
T PRK09357 78 RAAAAGGFTTVVAMP-NTKPVIDTPEVVEYVLDRAKEAGLVDVLPVGAITKGLAGEELTEFGALKEAGVVAFSDD----- 151 (423)
T ss_pred HHHHhCCCeEEEecC-CCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEEeCCCCccHHHHHHHHhCCcEEEECC-----
Confidence 999999999999999 677777777788877777766666777766554321 1234567777777777665532
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhccc
Q 015110 202 INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRT 281 (413)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~ 281 (413)
.....+.+.++++++.|+++|+++++|+++.......+.+. +......+...+|..+|..++.+++.+++++
T Consensus 152 --~~~~~~~~~l~~~~~~a~~~g~~v~iH~ee~~~~~~~~~~~----g~~~~~~~~~~~p~~~E~~~i~~~~~la~~~-- 223 (423)
T PRK09357 152 --GIPVQDARLMRRALEYAKALDLLIAQHCEDPSLTEGGVMNE----GEVSARLGLPGIPAVAEEVMIARDVLLAEAT-- 223 (423)
T ss_pred --CcccCCHHHHHHHHHHHHhcCCEEEEeCCCHHHhhcccccC----ChhhHHhCCCCCCHHHHHHHHHHHHHHHHHH--
Confidence 12345788999999999999999999999877644333222 2234446778899999999999999999875
Q ss_pred CCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCC
Q 015110 282 DGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 361 (413)
Q Consensus 282 ~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~ 361 (413)
|+|+|++|+++. +++++++.+|++|+.|++|+|||||+++++++..+++.+|++||||+++++++||+++++|.
T Consensus 224 -----g~~~hi~H~s~~-~~~~~i~~a~~~g~~v~~e~~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~~~~l~~~l~~G~ 297 (423)
T PRK09357 224 -----GARVHICHVSTA-GSVELIRWAKALGIKVTAEVTPHHLLLTDEDLLTYDPNYKVNPPLRTEEDREALIEGLKDGT 297 (423)
T ss_pred -----CCcEEEEeCCCH-HHHHHHHHHHHcCCCEEEEechHHheEcHHHHhCcCCceEECCCCCCHHHHHHHHHHHHcCC
Confidence 899999999999 99999999999999999999999999999887777888999999999999999999999999
Q ss_pred ccEEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhhhccccCCCC
Q 015110 362 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNM 412 (413)
Q Consensus 362 i~~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~ 412 (413)
+|++||||+||+.++|.. +|+.+++|++|+|+.+|++++ +++.++++
T Consensus 298 ~~~i~sDh~p~~~~~k~~---~~~~~~~G~~g~e~~~~~~~~-~~~~~~~~ 344 (423)
T PRK09357 298 IDAIATDHAPHAREEKEC---EFEAAPFGITGLETALSLLYT-TLVKTGLL 344 (423)
T ss_pred CeEEecCCCCCChHHccC---CHhhCCCCceEHHHHHHHHHH-HHHHcCCC
Confidence 999999999999888753 688999999999999999984 67777665
No 23
>PRK04250 dihydroorotase; Provisional
Probab=100.00 E-value=3.7e-52 Score=407.33 Aligned_cols=306 Identities=30% Similarity=0.432 Sum_probs=247.6
Q ss_pred EccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchHHHHHHHHh
Q 015110 48 TSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAA 127 (413)
Q Consensus 48 ~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~ 127 (413)
.+++++++.+..+++|+|+||+|++|++. .. ++.++||++|++|+|||||+|+|+..++....+++.+.++++++
T Consensus 2 ~~~~v~~~~~~~~~~i~i~~G~I~~i~~~-~~----~~~~~iD~~g~~v~PG~ID~HvH~~~~~~~~~e~~~~~~~aa~~ 76 (398)
T PRK04250 2 LEGKFLLKGRIVEGGIGIENGRISKISLR-DL----KGKEVIKVKGGIILPGLIDVHVHLRDFEESYKETIESGTKAALH 76 (398)
T ss_pred eeEEEEECCcEEEEEEEEECCEEEEeeCC-CC----CCCeEEECCCCEEccCEEeccccccCCCCCcHHHHHHHHHHHHh
Confidence 36788887777789999999999999741 11 24589999999999999999999977666667888999999999
Q ss_pred CCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecCCCCCCCCC
Q 015110 128 GGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPM 207 (413)
Q Consensus 128 ~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~ 207 (413)
+||||+++|| ++.|...+.+.+....+.++..++++|+++. ....+ .+++.++.. ..+|.|+.+.. ..
T Consensus 77 gGvTtv~~~p-~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~---~~~l~~l~~---~~~k~f~~~~~----~~ 144 (398)
T PRK04250 77 GGITLVFDMP-NTKPPIMDEKTYEKRMRIAEKKSYADYALNF-LIAGN---CEKAEEIKA---DFYKIFMGAST----GG 144 (398)
T ss_pred CCeEEEEECC-CCCCCCCcHHHHHHHHHHhCcCceeeEEEEE-ecCCC---HHHHHHHHh---hheEEEEecCC----Cc
Confidence 9999999999 7778888899999988888878899999887 44432 334555532 24677764421 11
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCC
Q 015110 208 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 287 (413)
Q Consensus 208 ~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g 287 (413)
...+.+... . .+.+..+.+|||+.+.+. ++.+||+.+|..++.+++.+++.+ |
T Consensus 145 ~~~~~~~~~--~-~~~~~~v~~H~E~~~~~~-----------------~~~~~p~~aE~~av~r~~~la~~~-------~ 197 (398)
T PRK04250 145 IFSENFEVD--Y-ACAPGIVSVHAEDPELIR-----------------EFPERPPEAEVVAIERALEAGKKL-------K 197 (398)
T ss_pred hhHHHHHHH--H-HhcCCeEEEEecChhhhh-----------------cccCCCHHHHHHHHHHHHHHHHHh-------C
Confidence 222222211 2 234567999999987632 235789999999999999999975 9
Q ss_pred ceEEEEccCChhhHHHHHHHHHHCCCC-EEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEEc
Q 015110 288 AHLHIVHLSDASSSLDLLMEAKTNGDS-ITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 366 (413)
Q Consensus 288 ~~vhi~H~s~~~~~~~~i~~ak~~G~~-v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~ 366 (413)
+|+||+|+|++ +++++|++ +|+. ||||||||||+|+++++ .+++.+||+||||++++|++||++|. .||+|+
T Consensus 198 ~~lhi~HvSt~-~~~~~i~~---~g~~~vt~Ev~ph~L~l~~~~~-~~~~~~k~~PPLR~~~d~~aL~~~l~--~Id~i~ 270 (398)
T PRK04250 198 KPLHICHISTK-DGLKLILK---SNLPWVSFEVTPHHLFLTRKDY-ERNPLLKVYPPLRSEEDRKALWENFS--KIPIIA 270 (398)
T ss_pred CCEEEEeCCCH-HHHHHHHH---cCCCcEEEEeCHHHhccCHHHH-CCCCceEEcCCCCCHHHHHHHHHhhc--cCCEEE
Confidence 99999999999 99999954 4887 99999999999999988 57889999999999999999999996 599999
Q ss_pred CCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhhhccccCCCCC
Q 015110 367 SDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNME 413 (413)
Q Consensus 367 sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~~ 413 (413)
|||+||+.++|+ .+++|++|+|+++|++|+ .|++|+|.
T Consensus 271 sDHaP~~~~~k~-------~~~~G~~g~e~~lpl~~~--~v~~~~ls 308 (398)
T PRK04250 271 SDHAPHTLEDKE-------AGAAGIPGLETEVPLLLD--AANKGMIS 308 (398)
T ss_pred cCCcccCHHHhh-------cCCCCcchHHHHHHHHHH--HHHhcCCC
Confidence 999999988884 257999999999999995 68888873
No 24
>PRK09236 dihydroorotase; Reviewed
Probab=100.00 E-value=2.5e-51 Score=409.18 Aligned_cols=347 Identities=26% Similarity=0.391 Sum_probs=282.5
Q ss_pred CcceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchHHH
Q 015110 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 121 (413)
Q Consensus 42 ~~~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~ 121 (413)
|++++|+|++|+++++...++|+|+||+|++|++....+ ++.++||++|++|+|||||+|+|+..++....+++.+.
T Consensus 1 ~~~~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~~~---~~~~~id~~g~~v~PG~ID~HvH~~~~~~~~~e~~~~~ 77 (444)
T PRK09236 1 MKRILIKNARIVNEGKIFEGDVLIENGRIAKIASSISAK---SADTVIDAAGRYLLPGMIDDQVHFREPGLTHKGDIASE 77 (444)
T ss_pred CccEEEECCEEEcCCCceEeEEEEECCEEEEecCCCCCC---CCCeEEECCCCEECCCEEEcccccccCcccccccHHHH
Confidence 457899999999987666789999999999998653211 25689999999999999999999987766666788889
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecCCC
Q 015110 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG 201 (413)
Q Consensus 122 ~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~ 201 (413)
+++++++||||++||+ ++.|...+.+.+....+.+.....++++++.+.... ..+++.++.+.|+.++|.|+....
T Consensus 78 ~~aa~~~GvTtv~d~p-~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~e~~~l~~~g~~g~k~~~~~~~ 153 (444)
T PRK09236 78 SRAAVAGGITSFMEMP-NTNPPTTTLEALEAKYQIAAQRSLANYSFYFGATND---NLDEIKRLDPKRVCGVKVFMGAST 153 (444)
T ss_pred HHHHHhCCcEEEEeCC-CCCCCcCcHHHHHHHHHHhccCeEEEEEEEeccCcc---cHHHHHHHHHccCcEEEEEeccCC
Confidence 9999999999999999 777777778888887777766778899887654322 366778888889999999975421
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCC-ccccccCCCCCchHHHHHHHHHHHHHHhhcc
Q 015110 202 INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLD-TRSYSTYLKTRPPSWEEAAIRELLTVAKDTR 280 (413)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~ 280 (413)
......+.+.++++++ ..|+++++|+|+.+.+...........+ ......|...||..+|..++.+++++++++
T Consensus 154 -~~~~~~~~~~~~~~~~---~~~~~v~~H~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~rp~~ae~~av~~~~~la~~~- 228 (444)
T PRK09236 154 -GNMLVDNPETLERIFR---DAPTLIATHCEDTPTIKANLAKYKEKYGDDIPAEMHPLIRSAEACYKSSSLAVSLAKKH- 228 (444)
T ss_pred -CCcccCcHHHHHHHHH---hcCCEEEEecCCHHHHHHHHHHHHHhcCCCCChhhccccCCHHHHHHHHHHHHHHHHHH-
Confidence 1112234556666654 4589999999998876422211100101 123445667899999999999999999975
Q ss_pred cCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcC
Q 015110 281 TDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 360 (413)
Q Consensus 281 ~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G 360 (413)
++++|+.|++++ ++++++++++.+|.+++||+|||||+++++++...++.++++||||+++++++||+++++|
T Consensus 229 ------~~~~hi~h~st~-~~~~~i~~~~~~g~~vt~e~~~H~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G 301 (444)
T PRK09236 229 ------GTRLHVLHISTA-KELSLFENGPLAEKRITAEVCVHHLWFDDSDYARLGNLIKCNPAIKTASDREALRQALADD 301 (444)
T ss_pred ------CCCEEEEeCCCH-HHHHHHHHHHHCCCCEEEEEchhhhhcCHHHHhccCceEEECCCCCCHHHHHHHHHHHhCC
Confidence 899999999999 9999999999999999999999999999988877788999999999999999999999999
Q ss_pred CccEEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhhhccccCCCC
Q 015110 361 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNM 412 (413)
Q Consensus 361 ~i~~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~ 412 (413)
.+|+|+|||+||..++|.. +|+.+++|++++|+++|++|. +|++++|
T Consensus 302 ~i~~igtDh~p~~~~~k~~---~~~~~~~G~~~~e~~l~~l~~--~v~~~~~ 348 (444)
T PRK09236 302 RIDVIATDHAPHTWEEKQG---PYFQAPSGLPLVQHALPALLE--LVHEGKL 348 (444)
T ss_pred CCcEEECCCCCCCHHHhcC---CcccCCCCcccHHHHHHHHHH--HHHhcCC
Confidence 9999999999999888853 688999999999999999983 6777665
No 25
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=100.00 E-value=4.8e-50 Score=388.24 Aligned_cols=287 Identities=34% Similarity=0.470 Sum_probs=246.2
Q ss_pred CCEEeeeeeecccccCCCCCCCccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceec
Q 015110 93 EAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV 172 (413)
Q Consensus 93 G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (413)
|++|+||+||+|+|++.++...+|++.+++++|+++||||+++|| |+.|..++.+.++...+.++..+.++|++++++.
T Consensus 1 G~~vlPG~iD~HvH~r~pg~~~~ed~~s~t~aA~~GGvTtv~~mP-nt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~~~ 79 (361)
T cd01318 1 GLLILPGVIDIHVHFREPGLTYKEDFVSGSRAAAAGGVTTVMDMP-NTKPPTTTAEALYEKLRLAAAKSVVDYGLYFGVT 79 (361)
T ss_pred CCEEecCeeEeeecCCCCCCCccCcHHHHHHHHHcCCCEEEEECC-CCCCCCCcHHHHHHHHHHhccCceeEEEEEEeec
Confidence 789999999999999999888899999999999999999999999 8888889999999988888777889999987754
Q ss_pred CCchhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccc
Q 015110 173 PENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 252 (413)
Q Consensus 173 ~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~ 252 (413)
.. +++.++.+.|+.++|.|+.+.. ...+ .+...+.+++++++ +++.+|+|+.+.+.....+.+ .
T Consensus 80 ~~-----~~l~~~~~~~~~g~k~f~~~~~-~~~~-~~~~~l~~~~~~~~---~~v~~H~E~~~l~~~~~~~~~------~ 143 (361)
T cd01318 80 GS-----EDLEELDKAPPAGYKIFMGDST-GDLL-DDEETLERIFAEGS---VLVTFHAEDEDRLRENRKELK------G 143 (361)
T ss_pred Ch-----hhHHHHHHhhCcEEEEEEecCC-CCcC-CCHHHHHHHHHhcC---CeEEEeCCChHHHHHHHhhhh------h
Confidence 32 3566666778889999875421 1112 57888999998875 789999999987654443222 1
Q ss_pred cccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCC
Q 015110 253 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 332 (413)
Q Consensus 253 ~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~ 332 (413)
...|+.+||+.+|..++.+++.+++.+ |+|+||+|+|+. +++++++++| .+|+||+|||||+|+++++.
T Consensus 144 ~~~~~~~~P~~aE~~av~r~~~la~~~-------~~~~hi~Hvs~~-~~~~~i~~~k---~~vt~ev~ph~L~l~~~~~~ 212 (361)
T cd01318 144 ESAHPRIRDAEAAAVATARALKLARRH-------GARLHICHVSTP-EELKLIKKAK---PGVTVEVTPHHLFLDVEDYD 212 (361)
T ss_pred ccCCCCcCCHHHHHHHHHHHHHHHHHH-------CCCEEEEeCCCH-HHHHHHHHhC---CCeEEEeCHHHhhcCHHHHh
Confidence 125678999999999999999999975 899999999999 9999999988 58999999999999998876
Q ss_pred CCCcceEEcCCCCChhcHHHHHHHHhcCCccEEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhhhccccCCCC
Q 015110 333 DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNM 412 (413)
Q Consensus 333 ~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~ 412 (413)
.+|+++|++||||++++|++||+++++|.||+++|||+||+.++|. .+|+.+++|++|+|+++|++++ .|+++++
T Consensus 213 ~~~~~~k~~PPlr~~~d~~aL~~~l~~G~id~i~SDh~P~~~~~k~---~~~~~a~~G~~g~e~~l~~~~~--~v~~~~l 287 (361)
T cd01318 213 RLGTLGKVNPPLRSREDRKALLQALADGRIDVIASDHAPHTLEEKR---KGYPAAPSGIPGVETALPLMLT--LVNKGIL 287 (361)
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHhCCCCCEEeeCCCCCCHHHcc---CChhhCCCCCccHHHHHHHHHH--HHHcCCC
Confidence 6788999999999999999999999999999999999999988885 3688999999999999999984 5666665
No 26
>PRK00369 pyrC dihydroorotase; Provisional
Probab=100.00 E-value=9.6e-50 Score=388.04 Aligned_cols=285 Identities=27% Similarity=0.351 Sum_probs=231.7
Q ss_pred eeEEEEECCEEEEcccCCCCCCCCCCCcEEec-CCCEEeeeeeecccccCCCCCCCccchHHHHHHHHhCCceEEEeCCC
Q 015110 60 SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDY-GEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL 138 (413)
Q Consensus 60 ~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~-~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~~ 138 (413)
+..|.+++|+|..|++.. + .++++||+ +|++|+|||||+|+|++.++...+|++.+++++|+++||||+++||
T Consensus 13 ~~~~~~~~~~~~~i~~~~--~---~~~~~id~~~G~~vlPG~ID~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~~mP- 86 (392)
T PRK00369 13 KEIKEICINFDRRIKEIK--S---RCKPDLDLPQGTLILPGAIDLHVHLRGLKLSYKEDVASGTSEAAYGGVTLVADMP- 86 (392)
T ss_pred CceEEEeeeeeeeEeecc--C---CCCceeecCCCCEEeCCEEEcccccCCCCCcccccHHHHHHHHHhCCcEEEEECC-
Confidence 456788889998887652 1 36789999 6999999999999999999998999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHH
Q 015110 139 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS 218 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~ 218 (413)
|+.|+.++.+.++.+.+.+...+.++|+++.+.... .+++. +.|+.++|.|.. + ..+.+ +++
T Consensus 87 nt~P~~~~~~~l~~~~~~a~~~~~vd~~~~~~~~~~----~~el~---~~~~~g~k~f~~-----~--~~~~~----~~~ 148 (392)
T PRK00369 87 NTIPPLNTPEAITEKLAELEYYSRVDYFVYSGVTKD----PEKVD---KLPIAGYKIFPE-----D--LEREE----TFR 148 (392)
T ss_pred CCCCCCChHHHHHHHHHHhCcCCeEEEEEEeeccCC----HHHHH---HhhCceEEEECC-----C--CchHH----HHH
Confidence 888888899999999888888889999998765321 22333 447888888741 1 12233 344
Q ss_pred HHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCCh
Q 015110 219 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 298 (413)
Q Consensus 219 ~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~ 298 (413)
.+.+++.++.+|||+.+.+... ....||..+|..++.++..+ +|+||+|+|++
T Consensus 149 ~~~~~~~~v~~HaE~~~l~~~~---------------~~~~rp~~aE~~ai~~~~~~------------~~lhi~HvSt~ 201 (392)
T PRK00369 149 VLLKSRKLKILHPEVPLALKSN---------------RKLRRNCWYEIAALYYVKDY------------QNVHITHASNP 201 (392)
T ss_pred HHHHhCCEEEEeCCCHHHhhcc---------------hhcccCHHHHHHHHHHHHHh------------CCEEEEECCCH
Confidence 4455668999999998764311 12468888998887776654 45899999998
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEEcCCCCCCChhhhc
Q 015110 299 SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL 378 (413)
Q Consensus 299 ~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p~~~~~k~ 378 (413)
+++ +.+|++| |+||||||||+|+++ .++.+||+||||+++||++||++|++ ||+|+|||+||+.++|.
T Consensus 202 -~~v---~~ak~~g--vt~Ev~pHhL~l~~~----~~~~~k~~PPLR~~~dr~aL~~~l~~--id~i~SDHaP~~~~~K~ 269 (392)
T PRK00369 202 -RTV---RLAKELG--FTVDITPHHLLVNGE----KDCLTKVNPPIRDINERLWLLQALSE--VDAIASDHAPHSSFEKL 269 (392)
T ss_pred -HHH---HHHHHCC--CeEEechhHheeccC----CCCceEEeCCCCCHHHHHHHHHHHHh--CCEEEeCCCCCCHHHcc
Confidence 765 5667777 899999999999975 36789999999999999999999998 99999999999988884
Q ss_pred cCCCCccccCCCcchHhHHHHHHhhhccccCCCC
Q 015110 379 LDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNM 412 (413)
Q Consensus 379 ~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~ 412 (413)
.+|+.+++|++|+|+++|++|+ .|.+|++
T Consensus 270 ---~~f~~~~~Gi~GlE~~lpll~~--~v~~~~l 298 (392)
T PRK00369 270 ---QPYEVCPPGIAALSFTPPFIYT--LVSKGIL 298 (392)
T ss_pred ---CCHhhCCCCCeeHHHHHHHHHH--HHHcCCC
Confidence 3699999999999999999995 6777766
No 27
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=100.00 E-value=1.3e-48 Score=381.66 Aligned_cols=303 Identities=34% Similarity=0.465 Sum_probs=263.8
Q ss_pred CcEEecCCCEEeeeeeecccccCCCCCCCccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeE
Q 015110 86 GQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV 165 (413)
Q Consensus 86 ~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (413)
.++||++|++|+||+||+|+|++.++....+++.+.+++|+.+||||+++|+ ++.|...+.+.+..+.+.+...+.+++
T Consensus 2 ~~~iD~~g~~vlPG~iD~HvH~~~~~~~~~e~~~s~s~aA~~GGvTtii~~p-~~~p~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd01317 2 AEVIDAEGKILAPGLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMP-NTNPVIDNPAVVELLKNRAKDVGIVRV 80 (374)
T ss_pred CeEEECCCCEEecCEEeeccccCCCCccccchHHHHHHHHHhCCCcEEEECC-CCCCCCCCHHHHHHHHHHhccCCceeE
Confidence 4789999999999999999999988877789999999999999999999999 777888888999888887776677788
Q ss_pred EeeceecCCchh-hHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhc
Q 015110 166 GFWGGLVPENAY-NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLE 244 (413)
Q Consensus 166 ~~~~~~~~~~~~-~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~ 244 (413)
.+++++...... .++++.++.+.|+.++|.+ ..+..+...+.++++.++++|.++.+|+|+.+.+.+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~i~~l~~~G~~~~k~~-------~~~~~~~~~l~~~~~~~~~~g~~v~~H~E~~~~~~~~~~~- 152 (374)
T cd01317 81 LPIGALTKGLKGEELTEIGELLEAGAVGFSDD-------GKPIQDAELLRRALEYAAMLDLPIIVHPEDPSLAGGGVMN- 152 (374)
T ss_pred EEEEEEeeCCCcccHHHHHHHHHCCcEEEEcC-------CcCCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhccCcc-
Confidence 777776543322 3778888888999999853 1234688899999999999999999999998876544432
Q ss_pred cCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEcccccc
Q 015110 245 DDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYL 324 (413)
Q Consensus 245 ~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l 324 (413)
.+......++..+|..+|..++.+++++++++ ++++|+.|+|+. +++++++++|++|+.+++++|||||
T Consensus 153 ---~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~-------~~~i~i~h~ss~-~~l~~i~~~~~~G~~~~~e~~~h~L 221 (374)
T cd01317 153 ---EGKVASRLGLPGIPPEAETIMVARDLELAEAT-------GARVHFQHLSTA-RSLELIRKAKAKGLPVTAEVTPHHL 221 (374)
T ss_pred ---CChhhHHhCCCCCCHHHHHHHHHHHHHHHHHh-------CCcEEEEeCCCH-HHHHHHHHHHHCCCCEEEEecHHHH
Confidence 23456677888999999999999999999976 899999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhhh
Q 015110 325 AFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLS 404 (413)
Q Consensus 325 ~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~ 404 (413)
+++++++...++.+|++||||++++++.||+++++|.+++|||||+||+.+.|.. +|+.+++|++|+|+.+|+++ .
T Consensus 222 ~ld~~~~~~~~~~~k~~Pplr~~~~~~~l~~~~~~G~i~~igsDh~p~~~~~k~~---~~~~~~~Gi~g~e~~l~~~~-~ 297 (374)
T cd01317 222 LLDDEALESYDTNAKVNPPLRSEEDREALIEALKDGTIDAIASDHAPHTDEEKDL---PFAEAPPGIIGLETALPLLW-T 297 (374)
T ss_pred hcCHHHHhccCCceEEcCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHccC---CHhhCCCcHhHHHHHHHHHH-H
Confidence 9999988777889999999999999999999999999999999999999877743 68899999999999999998 4
Q ss_pred ccccCCCC
Q 015110 405 RGLMGGNM 412 (413)
Q Consensus 405 ~gv~~g~~ 412 (413)
++|+.|.+
T Consensus 298 ~~~~~~~~ 305 (374)
T cd01317 298 LLVKGGLL 305 (374)
T ss_pred HHHHcCCC
Confidence 67777764
No 28
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=100.00 E-value=2.5e-48 Score=373.89 Aligned_cols=265 Identities=36% Similarity=0.597 Sum_probs=230.8
Q ss_pred CEEeeeeeecccccCCCCCC-CccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceec
Q 015110 94 AVIMPGLIDVHAHLDDPGRT-EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV 172 (413)
Q Consensus 94 ~~vlPGlID~H~H~~~~~~~-~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (413)
++|+||+||+|+|++.++.. .+|++.+++++|+++||||+++|| |+.|+..+.+.++...+.+...+.+||+++++..
T Consensus 1 ~~vlPG~iD~HvH~r~pg~~~~~e~~~t~t~aA~~GG~Ttv~~mp-n~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~ 79 (337)
T cd01302 1 LLVLPGFIDIHVHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDMP-NTGPPPIDLPAIELKIKLAEESSYVDFSFHAGIG 79 (337)
T ss_pred CEecCCeeEeeeccCCCCCCCchhHHHHHHHHHHhCCCcEEEECC-CCCCCCCcHHHHHHHHHHhCcCcEeeEEEEEecc
Confidence 57999999999999998876 789999999999999999999999 8888888889998888888777889999887765
Q ss_pred CCchhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccc
Q 015110 173 PENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 252 (413)
Q Consensus 173 ~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~ 252 (413)
.. +..+++.++.+.|+.++|+|+.+... ..+..+++.+.++++.++++|+++.+|+|
T Consensus 80 ~~--~~~~el~~l~~~Gv~g~K~f~~~~~~-~~~~~~~~~l~~~~~~~~~~g~~v~~H~E-------------------- 136 (337)
T cd01302 80 PG--DVTDELKKLFDAGINSLKVFMNYYFG-ELFDVDDGTLMRTFLEIASRGGPVMVHAE-------------------- 136 (337)
T ss_pred Cc--cCHHHHHHHHHcCCcEEEEEEeccCC-CccccCHHHHHHHHHHHHhcCCeEEEeHH--------------------
Confidence 43 24678888888999999999865321 11256888999999999999999999996
Q ss_pred cccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCC
Q 015110 253 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 332 (413)
Q Consensus 253 ~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~ 332 (413)
+++.+++++ |+++||+|+|+. +++++|+++|++|++|+||+|||||+|+++++.
T Consensus 137 ------------------r~~~la~~~-------g~~l~i~Hiss~-~~le~i~~ak~~g~~vt~ev~ph~L~l~~~~~~ 190 (337)
T cd01302 137 ------------------RAAQLAEEA-------GANVHIAHVSSG-EALELIKFAKNKGVKVTCEVCPHHLFLDESMLR 190 (337)
T ss_pred ------------------HHHHHHHHh-------CCcEEEEeCCCH-HHHHHHHHHHHCCCcEEEEcChhhheeCHHHhh
Confidence 235566654 899999999999 999999999999999999999999999998887
Q ss_pred CCCcceEEcCCCCChhcHHHHHHHHhcCCccEEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhhhccccCC
Q 015110 333 DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGG 410 (413)
Q Consensus 333 ~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g 410 (413)
.+++++|++||||++++|++||+++++|++|+|+|||+||+.++|..+ .+|+.+++|++|+|+.+|+++ +.+|+.|
T Consensus 191 ~~~~~~k~~Pplr~~~~~~~L~~~l~~G~id~i~sDh~p~~~~~k~~~-~~~~~a~~G~~g~e~~l~~~~-~~~~~~~ 266 (337)
T cd01302 191 LNGAWGKVNPPLRSKEDREALWEGVKNGKIDTIASDHAPHSKEEKESG-KDIWKAPPGFPGLETRLPILL-TEGVKRG 266 (337)
T ss_pred CCCceEEEeCCCCCHHHHHHHHHHHhCCCCCEEecCCCCCCHHHhccC-CCcccCCCCcccHHHHHHHHH-HHHHhcC
Confidence 778899999999999999999999999999999999999998888532 468899999999999999999 4676543
No 29
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=100.00 E-value=2.9e-46 Score=357.88 Aligned_cols=261 Identities=30% Similarity=0.478 Sum_probs=211.8
Q ss_pred CEEeeeeeecccccCCCCCCCccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecC
Q 015110 94 AVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP 173 (413)
Q Consensus 94 ~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (413)
.+|+||+||.|+|++.++..++|++.+++++|+++||||++||| |+.|...+.+.++...+.+++.+.+||+++.+...
T Consensus 2 ~~vlPG~ID~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~dmP-nt~P~~~~~~~~~~~~~~a~~~s~vd~~~~~~~~~ 80 (344)
T cd01316 2 TIRLPGLIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMP-NTNPSIVDVASLKLVQSLAQAKARCDYAFSIGATS 80 (344)
T ss_pred eEEeCCeEEeeeccCCCCcCCcChHHHHHHHHHhCCCeEEEECC-CCCCCCCCHHHHHHHHHHhccCcEEeEEEEeeecC
Confidence 47999999999999999888899999999999999999999999 88888889999999988888778999999877655
Q ss_pred CchhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCcccc
Q 015110 174 ENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 253 (413)
Q Consensus 174 ~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~ 253 (413)
.+. +++.++.. ++.++|.|+.+.. .... .++.........+...+.++..|+++.
T Consensus 81 ~~~---~~~~~l~~-~~~g~k~f~~~~~-~~~~-~~~~~~~~~~~~~~~~~~p~~~~~e~~------------------- 135 (344)
T cd01316 81 TNA---ATVGELAS-EAVGLKFYLNETF-STLI-LDKITAWASHFNAWPSTKPIVTHAKSQ------------------- 135 (344)
T ss_pred CCH---HHHHHHHh-ccCeEEEEECCCC-CCCc-cchHHHHHHHHHhcccCCCeEEehhhH-------------------
Confidence 443 33444433 3578888875421 0111 122222233334445577888887543
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCC
Q 015110 254 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 333 (413)
Q Consensus 254 ~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~ 333 (413)
.+.+++.+++.+ |+|+||+|+|++ +++++|+++|++|++|+||||||||+|+++++..
T Consensus 136 --------------~~~~~l~la~~~-------g~~lhi~HiSt~-~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~ 193 (344)
T cd01316 136 --------------TLAAVLLLASLH-------NRSIHICHVSSK-EEINLIRLAKARGLKVTCEVSPHHLFLSQDDLPR 193 (344)
T ss_pred --------------HHHHHHHHHHHH-------CCCEEEEeCCCH-HHHHHHHHHHHCCCcEEEEechHHeeccHHHhhc
Confidence 456678888875 999999999999 9999999999999999999999999999988754
Q ss_pred CCcceEEcCCCCChhcHHHHHHHHhcCCccEEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhhhccccCCCCC
Q 015110 334 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNME 413 (413)
Q Consensus 334 ~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~~ 413 (413)
+.+|++||||++++|++||++|. .||+|+|||+||+.++|.. + .+++|++|+|+++|++|+ +|++|+|.
T Consensus 194 --~~~k~~PPLR~~~dr~aL~~~l~--~id~i~SDHaP~~~~~K~~---~--~a~~G~~g~e~~lpl~~~--~v~~~~i~ 262 (344)
T cd01316 194 --GQYEVRPFLPTREDQEALWENLD--YIDCFATDHAPHTLAEKTG---N--KPPPGFPGVETSLPLLLT--AVHEGRLT 262 (344)
T ss_pred --CCceeCCCCcCHHHHHHHHHHHh--cCCEEEcCCCCCCHHHhcC---C--CCCCCcccHHHHHHHHHH--HHHcCCCC
Confidence 57999999999999999999995 6999999999999888742 2 689999999999999995 79999873
No 30
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=100.00 E-value=5.8e-43 Score=336.96 Aligned_cols=271 Identities=20% Similarity=0.207 Sum_probs=210.2
Q ss_pred EeeeeeecccccCCCCCCCccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-eeeEEeeceecCC
Q 015110 96 IMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVPE 174 (413)
Q Consensus 96 vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 174 (413)
-+||+||.|+|++.+ +++.+.+++|.++| ||+++|| ++.|+..+.+.+..+........ ..++.+++++...
T Consensus 2 ~~Pg~iD~h~h~~~~-----~~~~~~~~aa~~gG-Ttvv~mp-nt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 74 (335)
T cd01294 2 TIPRPDDMHLHLRDG-----AMLKLVLPYTARGF-SRAIVMP-NLKPPVTTTADALAYRERILAADPGPNFTPLMTLYLT 74 (335)
T ss_pred cCCCcceeEecCCCc-----hHHHHHHHHHHhCC-CEEEECC-CCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEEEEecc
Confidence 379999999999974 78889999999999 9999999 77777767676666665555444 4566665554222
Q ss_pred chhhHHHHHHHHHc-CCcEEEEeecCCCC-CCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccc
Q 015110 175 NAYNASALEALLNA-GVLGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 252 (413)
Q Consensus 175 ~~~~~~~l~~l~~~-G~~~ik~~~~~~~~-~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~ 252 (413)
.....++++++.+. |+.++|+|+..... ......+.+.+..+++.++++|++|.+|+|+.....
T Consensus 75 ~~~~~~el~~~~~~~G~~g~Klf~~~~~~~~~~~~~d~~~l~~~~e~~~~~g~~V~vHaE~~~l~~-------------- 140 (335)
T cd01294 75 ENTTPEELREAKKKGGIRGVKLYPAGATTNSQGGVTDLEKIYPVLEAMQKLGMPLLVHGEVPDFKI-------------- 140 (335)
T ss_pred CCCCHHHHHHHHHhCCceEEEEecCCCccCCCCCcCCHHHHHHHHHHHHHcCCeEEEecCCCcccc--------------
Confidence 22245788888876 99999998642110 011223568999999999999999999999865411
Q ss_pred cccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCC
Q 015110 253 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 332 (413)
Q Consensus 253 ~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~ 332 (413)
.+...|...+.+++.+++++ +++++||+|+|++ +++++|+++|+ +|++|||||||+|+++++.
T Consensus 141 -------~~~~~e~~~~~~~~~lA~~~------p~~~v~i~Hvst~-~~~~~i~~ak~---~vt~Et~ph~L~l~~~~~~ 203 (335)
T cd01294 141 -------DVLDREAKFIPVLEPLAQRF------PKLKIVLEHITTA-DAVEYVKSCNE---NVAATITPHHLLLTRDDLL 203 (335)
T ss_pred -------cchhhHHHHHHHHHHHHHHc------CCCeEEEecccHH-HHHHHHHhCCC---CcEEEEchhHheeeHHHhc
Confidence 01113345667788888863 5999999999999 99999998875 8999999999999998875
Q ss_pred C--CCcceEEcCCCCChhcHHHHHHHHhcCCcc-EEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhhhccccC
Q 015110 333 D--GDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMG 409 (413)
Q Consensus 333 ~--~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~-~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~ 409 (413)
. +|+.+||+||||++++|++||++|++|.|| +|+|||+||+.++|+. ++. .+|+.++|+++|+++ +.++
T Consensus 204 ~~~~g~~~k~~PPlR~~~d~~~L~~~l~~G~id~~i~SDHaP~~~~~K~~---~~g--~~Gi~~~~~~l~~~~--~~~~- 275 (335)
T cd01294 204 GGGLNPHLYCKPVAKRPEDREALRKAATSGHPKFFLGSDSAPHPKSNKES---SCG--CAGIFSAPIALPYLA--EVFE- 275 (335)
T ss_pred CCCCCCCeEEcCCCCCHHHHHHHHHHHHcCCCCeEEECCCCCCCCccccC---CCC--CccccCHHHHHHHHH--HHHh-
Confidence 4 588999999999999999999999999999 5999999999888852 232 348888888999997 2443
Q ss_pred CCC
Q 015110 410 GNM 412 (413)
Q Consensus 410 g~~ 412 (413)
|+|
T Consensus 276 ~~l 278 (335)
T cd01294 276 EHN 278 (335)
T ss_pred ccC
Confidence 465
No 31
>PLN02599 dihydroorotase
Probab=100.00 E-value=1.6e-39 Score=311.68 Aligned_cols=262 Identities=20% Similarity=0.211 Sum_probs=206.1
Q ss_pred EEeeeeeecccccCCCCCCCccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC--CeeeEEeeceec
Q 015110 95 VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR--IYVDVGFWGGLV 172 (413)
Q Consensus 95 ~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 172 (413)
+.+|---|+|+|++++ .+........++|+|++++|| |+.|+..+.+.+..+++.+... ..+||.+++++.
T Consensus 23 ~~~~~~~d~h~hlr~~------~~~~~~~~~~~gg~t~~i~MP-n~~Ppv~~~~~~~~~~~~~~~~~~~~vdf~~~~~l~ 95 (364)
T PLN02599 23 LTITRPDDWHLHLRDG------AKLAAVVPHSARHFGRAIVMP-NLKPPVTTTARALAYRERIMKALPPGSSFEPLMTLY 95 (364)
T ss_pred EEecCCcceeeEccCc------HHHHhhhHHhcCCcCEEEECC-CCCCCcCCHHHHHHHHHHHhhhcCCCcceEEEEEEe
Confidence 5688899999999975 234556667899999999999 8889889999999988887765 457999887763
Q ss_pred CCchhhHHHHHHHHHcCCc-EEEEeecCCCCC-CCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCc
Q 015110 173 PENAYNASALEALLNAGVL-GLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 250 (413)
Q Consensus 173 ~~~~~~~~~l~~l~~~G~~-~ik~~~~~~~~~-~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~ 250 (413)
.......++++++.+.|+. +||+|+...+.+ +.+..+.+.+..+++.++++|+++.+|+|+.+.... .
T Consensus 96 lt~~~~l~Ei~~~~~~Gvv~gfKlyp~~~tt~s~~gv~d~~~l~~~le~~~e~G~~L~vH~E~~~~~~~----------~ 165 (364)
T PLN02599 96 LTDNTTPEEIKAAKASGVVFAVKLYPAGATTNSQAGVTDLGKCLPVLEEMAEQGMPLLVHGEVTDPSVD----------I 165 (364)
T ss_pred cCCCCCHHHHHHHHHCCCcEEEEECcccCcCCCccccCCHHHHHHHHHHHHhcCCEEEEecCCCccccc----------c
Confidence 2222346888888889999 999997643211 222334689999999999999999999998653110 0
Q ss_pred cccccCCCCCchHHHHHHHHHHH--HHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEcccccccccc
Q 015110 251 RSYSTYLKTRPPSWEEAAIRELL--TVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 328 (413)
Q Consensus 251 ~~~~~~~~~~p~~~E~~~v~~~~--~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~ 328 (413)
. ..|...+.+++ .+++. +|+++|++|+|++ +++++++++|+ + +|++|+|||||+|++
T Consensus 166 ~-----------~~E~~~i~r~l~~~la~~-------~g~kI~i~HiSt~-~~ve~v~~ak~-~-~vtae~tpHhL~l~~ 224 (364)
T PLN02599 166 F-----------DREKVFIDTILAPLVQKL-------PQLKIVMEHITTM-DAVEFVESCGD-G-NVAATVTPQHLLLNR 224 (364)
T ss_pred c-----------ccHHHHHHHHHHHHHHhc-------cCCeEEEEecChH-HHHHHHHhccC-C-CEEEEecHHHHhcCH
Confidence 0 01334566777 45553 5999999999999 99999999984 4 899999999999999
Q ss_pred ccCC--CCCcceEEcCCCCChhcHHHHHHHHhcCCc-cEEcCCCCCCChhhhccCCCCccccCCCcchHhH---HHHHHh
Q 015110 329 EEIP--DGDTRFKCAPPIRDAANKEKLWEALMDGHI-DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQI---FCSLFF 402 (413)
Q Consensus 329 ~~~~--~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i-~~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~---~l~~~~ 402 (413)
+++. ..++.+||+||||+++||++||+++.+|.+ |+|+|||+||+.++|+ +++|.+|+++ .+|+++
T Consensus 225 ~~~~~~~~~~~~k~~PPlR~~~dr~aL~~al~~G~i~~~i~SDHaPh~~~~K~--------~~~g~~Gi~~~~~~l~~l~ 296 (364)
T PLN02599 225 NALFQGGLQPHNYCLPVLKREIHREALVKAATSGSKKFFLGTDSAPHPKRAKE--------ASCGCAGIYSAPVALSLYA 296 (364)
T ss_pred HHHhccCCCCCeEEECCCCCHHHHHHHHHHHHcCCCCEEEecCCCCCChHHhc--------CCCCCCCcccHHHHHHHHH
Confidence 8865 346789999999999999999999999996 8999999999988874 2445555555 799865
No 32
>PRK09061 D-glutamate deacylase; Validated
Probab=100.00 E-value=4.1e-39 Score=324.65 Aligned_cols=305 Identities=21% Similarity=0.218 Sum_probs=234.4
Q ss_pred cceEEEccEEEcCCCc--eeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchHH
Q 015110 43 NQYWLTSKRIVTPKGV--ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 120 (413)
Q Consensus 43 ~~lli~n~~vi~~~~~--~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~ 120 (413)
++++|+|++|+|+++. ..++|.|+||+|++|++... .+.++||++|++|+|||||+|+|...++
T Consensus 19 ~~~li~~~~vid~~~~~~~~~~v~I~~G~I~~ig~~~~-----~~~~viD~~g~~v~PG~ID~H~H~~~~~--------- 84 (509)
T PRK09061 19 YDLVIRNGRVVDPETGLDAVRDVGIKGGKIAAVGTAAI-----EGDRTIDATGLVVAPGFIDLHAHGQSVA--------- 84 (509)
T ss_pred CCEEEECcEEEeCCCCeeccceEEEECCEEEEecCCCC-----CCCeEEeCCCCEEecCeEeeeeCCCCCc---------
Confidence 5789999999998764 35799999999999987431 2568999999999999999999987542
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHh-cCCeeeEEeeceec-------CC------------------
Q 015110 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE-KRIYVDVGFWGGLV-------PE------------------ 174 (413)
Q Consensus 121 ~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~------------------ 174 (413)
..+.++.+||||++++..+..|. ..+++... ....+|++++.+.. ..
T Consensus 85 ~~~~~~~~GvTtvv~~~~~~~p~-------~~~~~~~~~~~~~vn~~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~ 157 (509)
T PRK09061 85 AYRMQAFDGVTTALELEAGVLPV-------ARWYAEQAGEGRPLNYGASVGWTPARIAVLTGPQAEGTIADFGKALGDPR 157 (509)
T ss_pred cchhhccCCceeEEeeccCCCCH-------HHHHHHHHhcCCcceeehhcCcHHHHHHHhCCcccccccccccccccccc
Confidence 25677899999999984233221 22222222 23346777655432 10
Q ss_pred -c-----hhhHHHHHHHH----HcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhc
Q 015110 175 -N-----AYNASALEALL----NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLE 244 (413)
Q Consensus 175 -~-----~~~~~~l~~l~----~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~ 244 (413)
. .++++++++++ +.|+.+++.+..+ .+..+.+++.++++.|+++|.++.+|+++.+...
T Consensus 158 ~~~~~~t~~el~~m~~ll~~al~~Ga~gis~~~~y-----~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~------ 226 (509)
T PRK09061 158 WQERAATPAELAEILELLEQGLDEGALGIGIGAGY-----APGTGHKEYLELARLAARAGVPTYTHVRYLSNVD------ 226 (509)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHCCCCEEecCCcc-----CCCCCHHHHHHHHHHHHHcCCEEEEEecCcccCC------
Confidence 1 23344455554 5899999875433 2346889999999999999999999998865310
Q ss_pred cCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCC------hhhHHHHHHHHHHCCCCEEEE
Q 015110 245 DDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD------ASSSLDLLMEAKTNGDSITVE 318 (413)
Q Consensus 245 ~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~------~~~~~~~i~~ak~~G~~v~~e 318 (413)
+..|..++.+++++++++ |+|+||+|+++ . +++++|+++|++|+.|++|
T Consensus 227 -----------------~~~e~~av~~~i~lA~~~-------G~rv~IsHlss~g~~~~~-~~le~I~~Ar~~Gi~Vt~e 281 (509)
T PRK09061 227 -----------------PRSSVDAYQELIAAAAET-------GAHMHICHVNSTSLRDID-RCLALVEKAQAQGLDVTTE 281 (509)
T ss_pred -----------------chhHHHHHHHHHHHHHHh-------CCCEEEEeeccCCcccHH-HHHHHHHHHHHcCCcEEEE
Confidence 134677999999999975 89999999998 7 8899999999999999999
Q ss_pred ccccc--------cccccccCCCCCcce---EE---cCCCCC-------------------------hhcHHHHHHHHhc
Q 015110 319 TCPHY--------LAFSAEEIPDGDTRF---KC---APPIRD-------------------------AANKEKLWEALMD 359 (413)
Q Consensus 319 ~~p~~--------l~l~~~~~~~~~~~~---k~---~Pplr~-------------------------~~~~~~L~~~l~~ 359 (413)
+|||| ++|+.+.....+..+ ++ +||||+ +.+++.||+.+++
T Consensus 282 ~~P~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 361 (509)
T PRK09061 282 AYPYGAGSTVVGAAFFDPGWLERMGLGYGSLQWVETGERLLTREELAKLRANDPGGLVLIHFLDEDNPRDRALLDRSVLF 361 (509)
T ss_pred ecCcchhhhhhcccccCHHHHHHhCCCHHHheehhcccccCCHHHHHHHhccCCCCeEEEEeccCCCCccchhHHHHhCC
Confidence 99999 777654444445555 78 999999 6779999999999
Q ss_pred CCccEEcCCCCCCChhhhccCCCCccccCCCcchHh------HHHHHHhhhccccC
Q 015110 360 GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ------IFCSLFFLSRGLMG 409 (413)
Q Consensus 360 G~i~~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e------~~l~~~~~~~gv~~ 409 (413)
+.+ +|+|||+||+.++|. .+|..+++|+.+.+ ..+|.+++ +.|++
T Consensus 362 p~~-~i~sD~~p~~~~~~~---~~~~~~~~~~~~~~~h~r~~~~~~~~l~-~~v~~ 412 (509)
T PRK09061 362 PGA-AIASDAMPWTWSDGT---VYEGDAWPLPEDAVSHPRSAGTFARFLR-EYVRE 412 (509)
T ss_pred CCc-eEecCCccccccccc---cccccccccccCCCCCchhhcchHHHHH-HHHhh
Confidence 999 999999999988884 46888999998888 88898874 45554
No 33
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=100.00 E-value=5.2e-39 Score=307.82 Aligned_cols=265 Identities=17% Similarity=0.208 Sum_probs=206.9
Q ss_pred EEeeeeeecccccCCCCCCCccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC--eeeEEeeceec
Q 015110 95 VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI--YVDVGFWGGLV 172 (413)
Q Consensus 95 ~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 172 (413)
+.+|---|+|+|+++. ++...+.-+...|||++++|| ++.|+..+.+.++.+++.+.... .++|.+++++.
T Consensus 2 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~vt~vv~mP-nt~P~~~~~e~~~~~~~~~~~~s~~~vDf~~~~~v~ 74 (341)
T TIGR00856 2 LTIRRPDDWHLHLRDG------AMLKAVLPYTSEIFSRAIVMP-NLAPPVTTVEAAVAYRERILDAVPAGHDFTPLMTLY 74 (341)
T ss_pred ceecCccceeeeccCc------hHHHHHHHHHHhhcCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCcceEEEEEEE
Confidence 3566678999999975 234556666778899999999 77787777888888877766555 36888888775
Q ss_pred CCchhhHHHHHHHHHc-CCcEEEEeecCCCCC-CCCCCCHHHHHHHHHHHHhcCCCEEEecCChh-hchhhHhhccCcCC
Q 015110 173 PENAYNASALEALLNA-GVLGLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLD 249 (413)
Q Consensus 173 ~~~~~~~~~l~~l~~~-G~~~ik~~~~~~~~~-~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~-~~~~~~~~~~~~~~ 249 (413)
+......++++++.+. |+.++|+|+...+.. +....+++.+.++++.++++|+++.+|+|+.. .+.
T Consensus 75 ~~~~~~~~Ei~~l~~~~Gv~g~Klf~~~~~~~~~~~v~dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~----------- 143 (341)
T TIGR00856 75 LTDSLTPEELERAKNEGVVRAVKLYPAGATTNSSHGVTDIDAIMPVLEAMEKIGLPLLLHGEVTHGDID----------- 143 (341)
T ss_pred CCCCCCHHHHHHHHHcCCeEEEEEccCCcccCCCcCCCCHHHHHHHHHHHHHcCCeEEEeecCCCCCcc-----------
Confidence 4443356888888877 999999987532111 12234568999999999999999999999863 110
Q ss_pred ccccccCCCCCchHHHHHHHH-HHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEcccccccccc
Q 015110 250 TRSYSTYLKTRPPSWEEAAIR-ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 328 (413)
Q Consensus 250 ~~~~~~~~~~~p~~~E~~~v~-~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~ 328 (413)
.. ..|..++. .+..+|++ ++++++|++|+|++ +++++++++|. .|++|||||||+|++
T Consensus 144 ---~~--------~~e~~a~~~~i~~lA~~------~~~~~~~i~H~st~-~~~~~i~~a~~---~vt~E~~ph~L~l~~ 202 (341)
T TIGR00856 144 ---IF--------DREARFIESVLEPLRQR------FPALKVVLEHITTK-DAIDYVEDGNN---RLAATITPQHLMFTR 202 (341)
T ss_pred ---cc--------cchhhhhHHHHHHHHHH------ccCCeEEEEecCcH-HHHHHHHHcCC---CEEEEEcHHHHhccH
Confidence 00 01334455 33455654 25899999999999 99999998864 399999999999999
Q ss_pred ccCCC--CCcceEEcCCCCChhcHHHHHHHHhcCCcc-EEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhh
Q 015110 329 EEIPD--GDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFL 403 (413)
Q Consensus 329 ~~~~~--~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~-~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~ 403 (413)
+++.. +|+.+||+||||++++|++||++|++|+|| +|+|||+||+.++|.. +.+++|++|+|+++|++++
T Consensus 203 ~~~~~~~~~~~~k~~PPlR~~~d~~aL~~~l~~G~id~~i~SDHaP~~~~~K~~-----~~~~~G~~g~e~~l~~~~~ 275 (341)
T TIGR00856 203 NDLLGGGVNPHLYCLPILKRNIHQQALLELAASGFPKFFLGTDSAPHARHRKES-----SCGCAGCFSAPTALPSYAE 275 (341)
T ss_pred HHHhccCCCCceEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChhHcCC-----CCCCCCcccHHHHHHHHHH
Confidence 98755 578999999999999999999999999999 6999999999888852 1478999999999999873
No 34
>PRK05451 dihydroorotase; Provisional
Probab=100.00 E-value=6e-37 Score=295.02 Aligned_cols=262 Identities=19% Similarity=0.226 Sum_probs=195.1
Q ss_pred EEeeeeeecccccCCCCCCCccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC--CeeeEEeeceec
Q 015110 95 VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR--IYVDVGFWGGLV 172 (413)
Q Consensus 95 ~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 172 (413)
+-+|=-||+|+|++.. . ..+++..+++ .++|++++|| ++.|...+.+.++.+...+.+. ..+++.+++++.
T Consensus 5 ~~~~~~~d~h~hl~~~-~-~~~~~~~~~~----~~~t~~v~mP-nt~P~~~~~~~l~~~~~~a~~~~~~~~d~~~~~~i~ 77 (345)
T PRK05451 5 LTIRRPDDWHLHLRDG-A-MLKAVVPYTA----RQFGRAIVMP-NLVPPVTTVAQALAYRERILAALPAGSNFEPLMTLY 77 (345)
T ss_pred EEecCcceEEEecCCc-h-HHHHHHHHHH----HhcCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCCcEEEEEEEE
Confidence 4567789999999964 2 2224444433 5699999999 7778777788888887776654 235777666664
Q ss_pred CCchhhHHHHHHHHHcCCc-EEEEeecCCCCC-CCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCc
Q 015110 173 PENAYNASALEALLNAGVL-GLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 250 (413)
Q Consensus 173 ~~~~~~~~~l~~l~~~G~~-~ik~~~~~~~~~-~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~ 250 (413)
.......++++++.+.|+. +||+|+...+.. +....+++.+.++++.++++|+++.+|+|+.+.... .
T Consensus 78 ~~~~~~~~El~~~~~~Gvv~g~Kl~~~~~~~~~~~~~~dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~----------~ 147 (345)
T PRK05451 78 LTDNTDPDELERAKASGVVTAAKLYPAGATTNSDAGVTDIEKIYPVLEAMQKLGMPLLVHGEVTDPDID----------I 147 (345)
T ss_pred eCCCCCHHHHHHHHHCCCEEEEEEecccCccCCccCcCCHHHHHHHHHHHHHcCCEEEEecCCCCcccc----------c
Confidence 4433346888888889955 999997642110 112237789999999999999999999998543100 0
Q ss_pred cccccCCCCCchHHHHHHHHHH-HHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccc
Q 015110 251 RSYSTYLKTRPPSWEEAAIREL-LTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 329 (413)
Q Consensus 251 ~~~~~~~~~~p~~~E~~~v~~~-~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~ 329 (413)
. ..|...+.+. ..+++++ +|+++||+|+|++ +++++++++ |.+|++|||||||+|+++
T Consensus 148 ~-----------~~e~~~~~~~l~~lA~~~------pg~~lhI~Hlst~-~~~e~i~~a---~~~it~Et~ph~L~l~~~ 206 (345)
T PRK05451 148 F-----------DREAVFIDRVLEPLRRRF------PKLKIVFEHITTK-DAVDYVREA---NDNLAATITPHHLLINRN 206 (345)
T ss_pred c-----------cchHHHHHHHHHHHHHhc------CCCcEEEEecCcH-HHHHHHHhc---CCCEEEEecHHHHhcCHH
Confidence 0 0123345554 4477653 5999999999999 999999876 568999999999999998
Q ss_pred cCC--CCCcceEEcCCCCChhcHHHHHHHHhcCCcc-EEcCCCCCCChhhhccCCCCccccCCCcchHhH---HHHHHh
Q 015110 330 EIP--DGDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQI---FCSLFF 402 (413)
Q Consensus 330 ~~~--~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~-~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~---~l~~~~ 402 (413)
++. ..++.+||+||||++++|++||++|++|.|| +|+|||+||+.++|+ +++|.+|++. .+|+++
T Consensus 207 ~~~~~~~~~~~k~~PPLR~~~d~~aLw~~l~~G~Id~~i~SDHaP~~~~~K~--------~~~G~~gi~~~~~g~~~~~ 277 (345)
T PRK05451 207 DMLVGGIRPHLYCLPILKRETHRQALREAATSGNPKFFLGTDSAPHARHAKE--------SACGCAGIFSAPAALELYA 277 (345)
T ss_pred HHhCCCcCCCeEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChHHhC--------CCCCCCchhhHHHHHHHHH
Confidence 764 3567899999999999999999999999999 799999999988884 2456666665 456665
No 35
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=100.00 E-value=7.2e-36 Score=295.71 Aligned_cols=259 Identities=25% Similarity=0.301 Sum_probs=197.7
Q ss_pred ceEEEccEEEcCCC--ceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchHHH
Q 015110 44 QYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 121 (413)
Q Consensus 44 ~lli~n~~vi~~~~--~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~ 121 (413)
+++|+|++|+++.+ ...++|.|+||+|++|++.... .+.++||++|++|+|||||+|+|+..+... ...
T Consensus 1 d~~i~n~~v~~~~~~~~~~~~i~I~~g~I~~i~~~~~~----~~~~~iD~~G~~v~PG~iD~H~H~~~~~~~-----~~~ 71 (415)
T cd01297 1 DLVIRNGTVVDGTGAPPFTADVGIRDGRIAAIGPILST----SAREVIDAAGLVVAPGFIDVHTHYDGQVFW-----DPD 71 (415)
T ss_pred CEEEECCEEECCCCCccccceEEEECCEEEEEecCCCC----CCCeEEECCCCEEccCEeeeeecCCccccc-----Ccc
Confidence 47899999999876 3578999999999999865321 256899999999999999999999875432 234
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCcH------------------------HHHHHHHHHHhcC-CeeeEE---eeceecC
Q 015110 122 TKAAAAGGITTLIDMPLNSDPSTIST------------------------ETLKLKVDAAEKR-IYVDVG---FWGGLVP 173 (413)
Q Consensus 122 ~~~al~~GvTTv~d~~~~~~~~~~~~------------------------~~~~~~~~~~~~~-~~~~~~---~~~~~~~ 173 (413)
.+.++++||||+++++++..|..... +.+..+++.+... ..+|+. +++.+..
T Consensus 72 ~~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~l~~ 151 (415)
T cd01297 72 LRPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLMEGLVALGEGLPWGWATFAEYLDALEARPPAVNVAALVGHAALRR 151 (415)
T ss_pred hhhHHhCcEEEEEeccccCccCCCChhhhhhhhhhhhcccccccccCCCCCCHHHHHHHHHhcCCCcCeeeccCcHHHHH
Confidence 77889999999999986444443332 4455666666444 468887 5554431
Q ss_pred ---------CchhhHHHHHHH----HHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhh
Q 015110 174 ---------ENAYNASALEAL----LNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH 240 (413)
Q Consensus 174 ---------~~~~~~~~l~~l----~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~ 240 (413)
.+.+.++++.++ ++.|+.++|.++.+.. ....+.+++.++++.|+++|.++.+|+++.+.
T Consensus 152 ~~~g~~~~~~~~~~~~~~~~l~~~al~~Ga~g~~~~~~y~~---~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~---- 224 (415)
T cd01297 152 AVMGLDAREATEEELAKMRELLREALEAGALGISTGLAYAP---RLYAGTAELVALARVAARYGGVYQTHVRYEGD---- 224 (415)
T ss_pred HHhCcCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcccccCC---cccCCHHHHHHHHHHHHHcCCEEEEEECcccc----
Confidence 122345666665 4679999998764421 01468999999999999999999999987542
Q ss_pred HhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhH---------HHHHHHHHHC
Q 015110 241 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS---------LDLLMEAKTN 311 (413)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~---------~~~i~~ak~~ 311 (413)
.|..++.+++++++++ |+|+||+|+|+. ++ +++|+++|++
T Consensus 225 -----------------------~e~~av~~~~~~a~~~-------g~r~~i~H~ss~-~~~~~~~~~~~l~~i~~a~~~ 273 (415)
T cd01297 225 -----------------------SILEALDELLRLGRET-------GRPVHISHLKSA-GAPNWGKIDRLLALIEAARAE 273 (415)
T ss_pred -----------------------cHHHHHHHHHHHHHHh-------CCCEEEEEEecC-CCcccchHHHHHHHHHHHHHh
Confidence 3567899999999875 899999999998 77 9999999999
Q ss_pred CCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEEcCCCCCCC
Q 015110 312 GDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTV 373 (413)
Q Consensus 312 G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p~~ 373 (413)
|++|++++||||+.+ +..|+.+.++.+++++|||+|+.
T Consensus 274 G~~v~~e~~p~~~~~------------------------~~~~~~l~~~~~~~i~SDh~~~~ 311 (415)
T cd01297 274 GLQVTADVYPYGAGS------------------------EDDVRRIMAHPVVMGGSDGGALG 311 (415)
T ss_pred CCcEEEEeCCCCCCc------------------------HHHHHHHHcCCCceeeeCCCcCC
Confidence 999999999987754 23334444448999999999974
No 36
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=99.98 E-value=2.8e-31 Score=259.19 Aligned_cols=289 Identities=22% Similarity=0.280 Sum_probs=202.7
Q ss_pred CcceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccC----CCC-C---C
Q 015110 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD----DPG-R---T 113 (413)
Q Consensus 42 ~~~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~----~~~-~---~ 113 (413)
|++++|+|++|+++++..+++|+|+||||++|++... ++.++||++|++|||||||+|+|.. .+. . .
T Consensus 1 ~~~~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~-----~~~~~iDa~g~~v~PG~ID~H~h~~~~~~~p~~~~~~~ 75 (383)
T PRK15446 1 MMEMILSNARLVLPDEVVDGSLLIEDGRIAAIDPGAS-----ALPGAIDAEGDYLLPGLVDLHTDNLEKHLAPRPGVDWP 75 (383)
T ss_pred CccEEEECcEEEcCCCceeeeEEEECCEEEEecCCCC-----CCCceEeCCCCEEEeCeEEcccCCcccccCCCCCCccc
Confidence 3679999999999887778999999999999997432 1447899999999999999999554 232 1 2
Q ss_pred CccchHHHHHHHHhCCceEEEeCCCCCC-CC-CC----cHHHHHHHHH--HHhcCCeeeEEeeceecCCchhhHHHHHHH
Q 015110 114 EWEGFPSGTKAAAAGGITTLIDMPLNSD-PS-TI----STETLKLKVD--AAEKRIYVDVGFWGGLVPENAYNASALEAL 185 (413)
Q Consensus 114 ~~e~~~~~~~~al~~GvTTv~d~~~~~~-~~-~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 185 (413)
..+++..+.++++++||||++||+.+.. |. .. ....+...++ ...++..+||++|+++...+.+.+++++++
T Consensus 76 ~~~~~~~~~~~a~~gG~Tt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~~~h~~~~~~~~~~~~~l~~~ 155 (383)
T PRK15446 76 ADAALAAHDAQLAAAGITTVFDALSVGDEEDGGLRSRDLARKLIDAIEEARARGLLRADHRLHLRCELTNPDALELFEAL 155 (383)
T ss_pred hHHHHHHHHHHHHhCCccEeeeeeEeccCCCCCcccHHHHHHHHHHHHHhhhcCchhccceeEEEEEecCcchHHHHHHH
Confidence 2278889999999999999999853332 31 11 1223444455 344667899999998876566678899999
Q ss_pred HHcCCcEEEEeecCC-CCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHH
Q 015110 186 LNAGVLGLKSFMCPS-GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSW 264 (413)
Q Consensus 186 ~~~G~~~ik~~~~~~-~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 264 (413)
++.|+.+||.||+.+ +...++ ..+.++... ++++| .+|+|+.+.+.+.. .+|+..
T Consensus 156 ~~~g~~~~k~fm~~~p~~~~~~--~~~~~~~~~--~~~~g---~~~~e~~~~~~~~~-----------------~~~~~~ 211 (383)
T PRK15446 156 LAHPRVDLVSLMDHTPGQRQFR--DLEKYREYY--AGKYG---LSDEEFDAFVEERI-----------------ALSARY 211 (383)
T ss_pred hcCCCcCEEEEeCCCCcccccc--CHHHHHHHH--HhhcC---CCHHHHHHHHHHHH-----------------HhHhhc
Confidence 999999999999875 322222 333444444 45777 77999887644222 125555
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCceEEEEccC-ChhhHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcce-EEcC
Q 015110 265 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS-DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRF-KCAP 342 (413)
Q Consensus 265 E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s-~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~-k~~P 342 (413)
+.+.+++++++|+++ |+++ .+|.. +. +.++.+++.|+.++. .|...-.. ..+...|... +..|
T Consensus 212 ~~e~i~~~v~~A~~~-------g~~v-~sH~~~~~----~~i~~a~~~Gv~~~e--~~~~~e~~-~~~~~~g~~v~~~~p 276 (383)
T PRK15446 212 APPNRRAIAALARAR-------GIPL-ASHDDDTP----EHVAEAHALGVAIAE--FPTTLEAA-RAARALGMSVLMGAP 276 (383)
T ss_pred CHHHHHHHHHHHHHC-------CCce-eecCCCCH----HHHHHHHHcCCceee--CCCcHHHH-HHHHHCCCEEEeCCc
Confidence 677899999999975 7876 88873 43 467888888988762 12111000 0111123223 3334
Q ss_pred -CCCC--hhcHHHHHHHHhcCCccEEcCCCCCCCh
Q 015110 343 -PIRD--AANKEKLWEALMDGHIDMLSSDHSPTVP 374 (413)
Q Consensus 343 -plr~--~~~~~~L~~~l~~G~i~~i~sDh~p~~~ 374 (413)
|+|. ...+..+|++++.|++++++|||.|++.
T Consensus 277 ~~~r~~~~~~~~~~~~~~~~Gv~~~lgSD~~p~~~ 311 (383)
T PRK15446 277 NVVRGGSHSGNVSALDLAAAGLLDILSSDYYPASL 311 (383)
T ss_pred ccccCCcccchHhHHHHHHCCCcEEEEcCCChhhH
Confidence 4665 5678999999999999999999988653
No 37
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=99.98 E-value=2.9e-31 Score=258.34 Aligned_cols=284 Identities=24% Similarity=0.315 Sum_probs=209.4
Q ss_pred EEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCC------CCCCCc---c
Q 015110 46 WLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDD------PGRTEW---E 116 (413)
Q Consensus 46 li~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~------~~~~~~---e 116 (413)
+|+|++|+++++...++|.|+||+|++|++... ...++||++|++|+|||||+|+|..+ ++. .| +
T Consensus 1 ~i~~~~vv~~~~~~~~~i~i~dg~I~~i~~~~~-----~~~~~iD~~G~~v~PGlID~H~h~~e~~~~prp~~-~~~~~~ 74 (376)
T TIGR02318 1 VLSNARLVLEDEVVEGSVVIEDGAIADIGEGPV-----ALAEAIDGEGDLLLPGLIDLHTDNLERHMSPRPGV-DWPIDA 74 (376)
T ss_pred CEeCeEEECCCceEeeeEEEECCEEEEecCCCC-----CCCceEeCCCCEEeccEEEcccCccccCcCCCCCC-CcchHH
Confidence 489999999888777799999999999987432 24568999999999999999999887 444 44 6
Q ss_pred chHHHHHHHHhCCceEEEeCCCCC--CCCCCcHHHHHHHH---HHHhcC--CeeeEEeeceecCCchhhHHHHHHHHHcC
Q 015110 117 GFPSGTKAAAAGGITTLIDMPLNS--DPSTISTETLKLKV---DAAEKR--IYVDVGFWGGLVPENAYNASALEALLNAG 189 (413)
Q Consensus 117 ~~~~~~~~al~~GvTTv~d~~~~~--~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~G 189 (413)
.+....++++++||||+++|+.+. .|.....+.++.++ +.++.+ ..+|+++|+++....++..++++.+.+.|
T Consensus 75 ~~~~~~~~~aa~GiTT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~h~~~e~~~~~~~~~l~~~~~~g 154 (376)
T TIGR02318 75 AIVEHDKQLAAAGITTVFDALALGDTESGGRRPDNLRRMIDAISEARDRGLLRADHRLHLRCELPNEEVLPELEELIDDP 154 (376)
T ss_pred HHHHHHHHHhhCCcceEEeeEEecccCCcCccHHHHHHHHHHHHHhhhcCchhhhceeEEEEEecCccHHHHHHHHhcCC
Confidence 788889999999999999998543 35556677777776 555544 78899999988544555688999999999
Q ss_pred CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHH
Q 015110 190 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI 269 (413)
Q Consensus 190 ~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v 269 (413)
+.+||.||+.++ +..++.+.+.+.+.+.. ++| .+|+|+.+.+.......+ . . ..+.+
T Consensus 155 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~g---~~~~e~~~~~~~~~~~~~------~-------~----~~e~i 211 (376)
T TIGR02318 155 RVDLISLMDHTP-GQRQFRDLEKYREYYRG--KRG---LSDDEFDEIVEERIARRA------E-------Y----GLANR 211 (376)
T ss_pred CcCEEEEeCCCC-CcccccCHHHHHHHHHh--hcC---CCHHHHHHHHHHHHHHHh------h-------c----cHHHH
Confidence 999999998865 33456777777776654 666 789999877553332211 0 0 14678
Q ss_pred HHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEcccccccccc-ccCCCCCcc-eEEcC-CCCC
Q 015110 270 RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA-EEIPDGDTR-FKCAP-PIRD 346 (413)
Q Consensus 270 ~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~-~~~~~~~~~-~k~~P-plr~ 346 (413)
++++++|+++ |+++ .+|.... .+.++++++.|+.+. |. | +...+ +.+...|.. .++.| |+|.
T Consensus 212 ~~~v~~A~~~-------G~~v-~sH~~~~---~e~i~~a~~~Gv~~~-E~-~--~t~e~a~~~~~~G~~v~~~~p~~~r~ 276 (376)
T TIGR02318 212 SEIAALARAR-------GIPL-ASHDDDT---PEHVAEAHDLGVTIS-EF-P--TTLEAAKEARSLGMQILMGAPNIVRG 276 (376)
T ss_pred HHHHHHHHHC-------CCeE-EEecCCC---HHHHHHHHHCCCChh-cc-C--CCHHHHHHHHHcCCeEEECCcccccc
Confidence 9999999875 8886 8887432 456788888898432 11 1 11000 112233544 56667 7887
Q ss_pred hhc--HHHHHHHHhcCCccEEcCCCCCCC
Q 015110 347 AAN--KEKLWEALMDGHIDMLSSDHSPTV 373 (413)
Q Consensus 347 ~~~--~~~L~~~l~~G~i~~i~sDh~p~~ 373 (413)
..+ +..+|++++.|.+++++|||.|++
T Consensus 277 ~~~~~~~~l~~~~~~G~~~~l~SD~~p~~ 305 (376)
T TIGR02318 277 GSHSGNLSARELAHEGLLDVLASDYVPAS 305 (376)
T ss_pred ccccchHHHHHHHHCCCcEEEEcCCCcHH
Confidence 765 889999999999999999999865
No 38
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=99.91 E-value=1.2e-22 Score=200.11 Aligned_cols=292 Identities=17% Similarity=0.208 Sum_probs=167.0
Q ss_pred eEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCC---CccchHHH
Q 015110 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---EWEGFPSG 121 (413)
Q Consensus 45 lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~---~~e~~~~~ 121 (413)
++|+|++|++++...+++|+|+||+|++|++....+ ..++.++||++|++|||||||+|+|+...+.. ...+....
T Consensus 2 ~~i~~~~v~~~~~~~~~~v~i~~g~I~~v~~~~~~~-~~~~~~~id~~g~~v~PG~id~H~H~~~~~~~~~~~~~~~~~~ 80 (387)
T cd01308 2 TLIKNAEVYAPEYLGKKDILIAGGKILAIEDQLNLP-GYENVTVVDLHGKILVPGFIDQHVHIIGGGGEGGPSTRTPEVT 80 (387)
T ss_pred EEEECcEEeCCCCccceEEEEECCEEEEEeCCcccc-cCCCCeEEECCCCEEccCeeehhhCcccccCCCcccccCHHHH
Confidence 579999999977666889999999999999764322 11356899999999999999999998753211 11222345
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceec-CC--chh----hHHHHHHHHHcCCcEEE
Q 015110 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV-PE--NAY----NASALEALLNAGVLGLK 194 (413)
Q Consensus 122 ~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~----~~~~l~~l~~~G~~~ik 194 (413)
..+++++|+||++|++ +..+.....+.+....+.....+...+...+.+. +. ..+ .+..+++....|..+++
T Consensus 81 ~~~~~~~G~tt~~d~~-~~~~~~~~~~~~~~~~~~~~~~Gv~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~ 159 (387)
T cd01308 81 LSDLTTAGVTTVVGCL-GTDGISRSMEDLLAKARALEEEGITCFVYTGSYEVPTRTITGSIRKDLLLIDKVIGVGEIAIS 159 (387)
T ss_pred HHHHHhCCceEEecCc-CCCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCcCchhhHHHHHHHHHHhcCcceEEEc
Confidence 5688999999999997 4434334445444444433322222332221110 00 001 11122221111222211
Q ss_pred EeecCCCCCCCCCCCHHHHHHHHHHHHhcCC------CEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHH
Q 015110 195 SFMCPSGINDFPMTNASHIKEGLSVLARYKR------PLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 268 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~------~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~ 268 (413)
. . ........++.++++.++..+. .+++|.... ..+
T Consensus 160 ~---~----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vh~~~~-------------------------------~~~ 201 (387)
T cd01308 160 D---H----RSSQPTVEELARIAAEARVGGLLGGKAGIVHIHLGDG-------------------------------KRA 201 (387)
T ss_pred C---C----CCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCc-------------------------------hHH
Confidence 1 1 1112355677777777775443 245554321 125
Q ss_pred HHHHHHHHhhcccCCCCCCceE-EEEccCChhhHHH----HHHHHHHCCC--CEEEEccccccccccccCCCCCcceEEc
Q 015110 269 IRELLTVAKDTRTDGPAEGAHL-HIVHLSDASSSLD----LLMEAKTNGD--SITVETCPHYLAFSAEEIPDGDTRFKCA 341 (413)
Q Consensus 269 v~~~~~~a~~~~~~~~~~g~~v-hi~H~s~~~~~~~----~i~~ak~~G~--~v~~e~~p~~l~l~~~~~~~~~~~~k~~ 341 (413)
+++++++.++. |+++ |++|.+.. ...+ .++.++ +|. .+....+|+|+ -.
T Consensus 202 ~~~i~~~~~~~-------G~~~~~~~~~~~~-~~~~~~~~~~~~~~-~G~~v~i~~~~~~~~~---------------~~ 257 (387)
T cd01308 202 LSPIFELIEET-------EIPITQFLPTHIN-RTAPLFEQGVEFAK-MGGTIDLTSSIDPQFR---------------KE 257 (387)
T ss_pred HHHHHHHHHhc-------CCCcceeECCccc-CCHHHHHHHHHHHH-cCCcEEEECCCCcccc---------------cc
Confidence 66666666643 6666 77777654 3333 344443 343 34444455433 14
Q ss_pred CCCCChhcHHHHHHHHhcCCc-c--EEcCCCC---CCChhhhccCCCCccccCCCcchHhHHHHHHhhhccccCCCC
Q 015110 342 PPIRDAANKEKLWEALMDGHI-D--MLSSDHS---PTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLMGGNM 412 (413)
Q Consensus 342 Pplr~~~~~~~L~~~l~~G~i-~--~i~sDh~---p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~~g~~ 412 (413)
||++ ..+.+|.+++.|.. | +++|||. |+..+.+ .+ ...|..+++++++.+. .+|+.|++
T Consensus 258 ~~~~---~~~~l~~~~~~g~~~d~i~l~TD~~~~~p~~~~~g-----~~--~~~g~~~~~~~~~~~~--~~v~~~~i 322 (387)
T cd01308 258 GEVR---PSEALKRLLEQGVPLERITFSSDGNGSLPKFDENG-----NL--VGLGVGSVDTLLREVR--EAVKCGDI 322 (387)
T ss_pred CccC---hHHHHHHHHHhCCCCCcEEEEECCCCCcccCccCC-----eE--EecCcCcHHHHHHHHH--HHHHhCCC
Confidence 4543 35778888888863 2 9999995 3322111 11 3568899999988886 36666654
No 39
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=99.91 E-value=9.3e-23 Score=200.92 Aligned_cols=293 Identities=21% Similarity=0.238 Sum_probs=170.8
Q ss_pred ceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCC---CccchHH
Q 015110 44 QYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---EWEGFPS 120 (413)
Q Consensus 44 ~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~---~~e~~~~ 120 (413)
.++|+|++|++++...+++|+|+||+|++|++..+.+...++.++||++|++|+|||||+|+|+...+.. ...+...
T Consensus 2 ~~~i~~~~v~~~~~~~~~~i~i~~g~I~~v~~~~~~~~~~~~~~~id~~g~~v~PG~id~H~H~~~~~~~~~~~~~t~~~ 81 (388)
T PRK10657 2 FTLLKNAHVYAPEDLGKKDILIAGGKIIAIADNINIPDIVPDIEVIDASGKILVPGFIDQHVHIIGGGGEGGFSTRTPEV 81 (388)
T ss_pred eEEEEccEEECCCCCcceEEEEECCEEEEecCCccccccCCCCeEEECCCCEEcccceeeeeCcccCCCCcccccCCHHH
Confidence 4789999999987656789999999999998754221111246899999999999999999998742211 1123456
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecCC
Q 015110 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPS 200 (413)
Q Consensus 121 ~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~ 200 (413)
.+++++++||||+++++ +..+.....+.+....+. +.+.|+..+.. ....
T Consensus 82 ~~~~~~~~GvTTvvd~~-~~~~~~~~~~~~~~~~~~----------------------------~~~~Gv~~~~~-~~~~ 131 (388)
T PRK10657 82 QLSDLTEAGITTVVGLL-GTDGITRSMESLLAKARA----------------------------LEEEGISAYMY-TGSY 131 (388)
T ss_pred HHHHHHhCCceEEECCC-CCCCCCCCHHHHHHHHHH----------------------------HHhhCCEEEEE-ecCC
Confidence 77899999999999998 432222222222222221 12223333311 1000
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcc
Q 015110 201 GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTR 280 (413)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~ 280 (413)
. .+. ..+...+.. .+ ..+ + .+. ..+......|...+|...+...+.++.+.++.+
T Consensus 132 ~---~~~---~~~~~~~~~----~~--~~~----~----~~~----g~g~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~- 186 (388)
T PRK10657 132 H---VPV---RTITGSIRK----DI--VLI----D----KVI----GVGEIAISDHRSSQPTVEELARLAAEARVGGLL- 186 (388)
T ss_pred C---CCc---hhhhcchhh----ce--ehh----h----hhh----CcceeeeccCCCCCCCHHHHHHHHHHHHHHHHh-
Confidence 0 000 000000000 00 000 0 000 000111222333455555666666666655443
Q ss_pred cCCCCCCc-eEEEEccC-ChhhHHHHHHHH-HHCCCCEEEEcccccccccccc------CCCCCcce--E-EcCCCCChh
Q 015110 281 TDGPAEGA-HLHIVHLS-DASSSLDLLMEA-KTNGDSITVETCPHYLAFSAEE------IPDGDTRF--K-CAPPIRDAA 348 (413)
Q Consensus 281 ~~~~~~g~-~vhi~H~s-~~~~~~~~i~~a-k~~G~~v~~e~~p~~l~l~~~~------~~~~~~~~--k-~~Pplr~~~ 348 (413)
.|. +.++.|++ +. .+++.+.++ ++.|+.+++ +|++|+.++.+. +...|... . ++||+|.+.
T Consensus 187 -----~g~~~~i~vH~~~~~-~~l~~v~~~l~~~Gv~~~~-~~~~H~~~~~~~~~~~~~~~~~G~~~~v~~~~~~~~~~~ 259 (388)
T PRK10657 187 -----SGKAGIVHVHMGDGK-KGLQPLFELLENTDIPISQ-FLPTHVNRNEPLFEQALEFAKKGGVIDLTTSDPDFLGEG 259 (388)
T ss_pred -----cCCCCEEEEEeCCch-HHHHHHHHHHHhcCCCcce-eeCcccCCCHHHHHHHHHHHHcCCeEEEecCCCcccccC
Confidence 232 27899988 56 788888554 688998886 899998874432 11122222 3 688888764
Q ss_pred ---cHHHHHHHHhcCC-cc--EEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHHh
Q 015110 349 ---NKEKLWEALMDGH-ID--MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFF 402 (413)
Q Consensus 349 ---~~~~L~~~l~~G~-i~--~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~ 402 (413)
+.+.||+++++|. +| +++|||.+....-.. +.. .++.|..+++.++..+.
T Consensus 260 ~~~~~~~l~~~~~~G~~~d~v~l~tD~~~~~~~~~~--~g~--~~~~g~~~~~~l~~~~~ 315 (388)
T PRK10657 260 EVAPAEALKRALEAGVPLSRVTLSSDGNGSLPKFDE--DGN--LVGLGVGSVESLLEEVR 315 (388)
T ss_pred ccCHHHHHHHHHHcCCChhheEEECCCCCCCceecc--CCC--EeccCcCchhhHHHHHH
Confidence 4588999999998 77 999999643211000 011 25678888888888775
No 40
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=99.91 E-value=1.6e-22 Score=198.20 Aligned_cols=255 Identities=20% Similarity=0.254 Sum_probs=163.3
Q ss_pred cceEEEccEEEcCCC--ceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchHH
Q 015110 43 NQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 120 (413)
Q Consensus 43 ~~lli~n~~vi~~~~--~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~ 120 (413)
++++|+|++++++.. ..+++|+|+||+|++|++.... ++.++||++|++|+|||||+|+|+..++.. ....
T Consensus 3 ~~~li~~~~i~~~~~~~~~~~~i~i~~g~I~~i~~~~~~----~~~~viD~~g~~v~PGliD~H~H~~~~g~~---~~~~ 75 (379)
T PRK12394 3 NDILITNGHIIDPARNINEINNLRIINDIIVDADKYPVA----SETRIIHADGCIVTPGLIDYHAHVFYDGTE---GGVR 75 (379)
T ss_pred ccEEEECcEEECCCCCcccccEEEEECCEEEEEcCCCCC----CCCeEEECCCCEEECCEEEeeecCCCCCcc---cccC
Confidence 478999999998764 3467899999999999874321 245899999999999999999999765432 2223
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHh---cCCeeeEEeeceecCC-----chh--hHHHHHHHHH---
Q 015110 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE---KRIYVDVGFWGGLVPE-----NAY--NASALEALLN--- 187 (413)
Q Consensus 121 ~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~--~~~~l~~l~~--- 187 (413)
....++++||||++|++ +. ...+.+.+........ .+.++++++++..... ... ..++++++++
T Consensus 76 ~~~~~l~~G~Ttv~d~g-~~--~~~~~~~~~~~~~a~~~~gira~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (379)
T PRK12394 76 PDMYMPPNGVTTVVDAG-SA--GTANFDAFYRTVICASKVRIKAFLTVSPPGQTWSGYQENYDPDNIDENKIHALFRQYR 152 (379)
T ss_pred HHHHHHhCCccEEEECC-CC--CcccHHHHHHHHhhhhcceeeeEEeeecccccccCcccccChhHCCHHHHHHHHHHCc
Confidence 44668999999999997 32 2233444444432222 2344555544322110 101 1356666653
Q ss_pred cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHH
Q 015110 188 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 267 (413)
Q Consensus 188 ~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~ 267 (413)
.++.++|++++.... ...+++.++++++.|+++|+++++|+++....
T Consensus 153 ~~~~g~ki~~~~~~~---~~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~------------------------------ 199 (379)
T PRK12394 153 NVLQGLKLRVQTEDI---AEYGLKPLTETLRIANDLRCPVAVHSTHPVLP------------------------------ 199 (379)
T ss_pred CcEEEEEEEEecccc---cccchHHHHHHHHHHHHcCCCEEEEeCCCCcc------------------------------
Confidence 467788877644311 14578899999999999999999999754320
Q ss_pred HHHHHHHHHhhcccCCCCCCceEEEEc-------cCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEE
Q 015110 268 AIRELLTVAKDTRTDGPAEGAHLHIVH-------LSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKC 340 (413)
Q Consensus 268 ~v~~~~~~a~~~~~~~~~~g~~vhi~H-------~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~ 340 (413)
..+++.+... ...-.|+.| .+.. +..+.+++++++|+.+.+. ++
T Consensus 200 -~~~~~~~l~~-------g~~~~H~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~~-~g------------------- 250 (379)
T PRK12394 200 -MKELVSLLRR-------GDIIAHAFHGKGSTILTEEG-AVLAEVRQARERGVIFDAA-NG------------------- 250 (379)
T ss_pred -HHHHHHhcCC-------CCEEEecCCCCCCCcCCCCC-CChHHHHHHHhCCeEEEec-CC-------------------
Confidence 1112222221 012344444 3333 4467788888888532211 11
Q ss_pred cCCCCChhcHHHHHHHHhcCC-ccEEcCCCCCCC
Q 015110 341 APPIRDAANKEKLWEALMDGH-IDMLSSDHSPTV 373 (413)
Q Consensus 341 ~Pplr~~~~~~~L~~~l~~G~-i~~i~sDh~p~~ 373 (413)
++..+.+.+|+++.+|. .++|+||++|.+
T Consensus 251 ----~s~~~~~~~~~~l~~G~~~~~lgTD~~~~~ 280 (379)
T PRK12394 251 ----RSHFDMNVARRAIANGFLPDIISSDLSTIT 280 (379)
T ss_pred ----ccccchHHHHHHHHCCCCceEEECCCCCCC
Confidence 23336678899999996 799999999865
No 41
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=99.91 E-value=2.8e-22 Score=198.20 Aligned_cols=174 Identities=25% Similarity=0.295 Sum_probs=132.7
Q ss_pred CcceEEEccEEEcCC-CceeeEEEEECCEEEEcccCCCCC--C-------CCCCCcEEecCCCEEeeeeeecccccCCCC
Q 015110 42 YNQYWLTSKRIVTPK-GVISGAVEIKEGNIISIVSEEDWP--R-------NSKTGQVVDYGEAVIMPGLIDVHAHLDDPG 111 (413)
Q Consensus 42 ~~~lli~n~~vi~~~-~~~~~~V~I~dG~I~~Ig~~~~~~--~-------~~~~~~vID~~G~~vlPGlID~H~H~~~~~ 111 (413)
..+++|+|++|+|+. +...++|.|+||||++|++..... . ..++.++||++|++|+|||||+|+|+..++
T Consensus 67 ~~DlVItNa~IIDp~~Gi~kaDIgIkDGrIaaIG~~~npd~~~gv~p~~~~g~~teVIDaeG~IVtPG~ID~HVH~~~Pg 146 (569)
T PRK13308 67 ALDFVLCNVTVIDPVLGIVKGDIGIRDGRIVGIGKAGNPDIMDGVDPRLVVGPGTDVRPAEGLIATPGAIDVHVHFDSAQ 146 (569)
T ss_pred cCCEEEECeEEEcCCCCeEEeEEEEECCEEEEecCCCCccccccccccccCCCCCeEEECCCCEEEeCEEEeeeCCCCcc
Confidence 358999999999964 556889999999999998753210 0 013568999999999999999999998653
Q ss_pred CCCccchHHHHHHHHhCCceEEEeCCCC-CCC-CCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcC
Q 015110 112 RTEWEGFPSGTKAAAAGGITTLIDMPLN-SDP-STISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAG 189 (413)
Q Consensus 112 ~~~~e~~~~~~~~al~~GvTTv~d~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G 189 (413)
..++++++||||+++++.. +.+ .......++.+++.... ..+++++++.... ...+++.+++++|
T Consensus 147 ---------~~~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~~-~pvN~g~~gkG~~---s~~aeL~eli~aG 213 (569)
T PRK13308 147 ---------LVDHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEA-WPVNFGFLGRGNS---SKPAALIEQVEAG 213 (569)
T ss_pred ---------HHHHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHHHhc-CCccEEEEcCCcc---cCHHHHHHHHHCC
Confidence 2388999999999996421 112 24556777777766654 4588888754222 3467888999999
Q ss_pred CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChh
Q 015110 190 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK 235 (413)
Q Consensus 190 ~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~ 235 (413)
+.+||++..+ ..+++.+.+++++|+++|+++.+|++...
T Consensus 214 A~GfKi~ed~-------g~t~~~i~~aL~~A~~~dv~VaiHadtln 252 (569)
T PRK13308 214 ACGLKIHEDW-------GAMPAAIDTCLEVADEYDFQVQLHTDTLN 252 (569)
T ss_pred CCEEeecCCC-------CCCHHHHHHHHHHHHhcCCEEEEeCCCcC
Confidence 9999987433 24778999999999999999999998754
No 42
>PRK13985 ureB urease subunit beta; Provisional
Probab=99.91 E-value=3.4e-22 Score=196.79 Aligned_cols=214 Identities=24% Similarity=0.337 Sum_probs=151.6
Q ss_pred CcceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCC---------CCCCCcEEecCCCEEeeeeeecccccCCCCC
Q 015110 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPR---------NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR 112 (413)
Q Consensus 42 ~~~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~---------~~~~~~vID~~G~~vlPGlID~H~H~~~~~~ 112 (413)
..+++|+|++|+|..+...++|.|+||||++|++...... ..++.++||++|++|+|||||+|+|+..++.
T Consensus 64 ~~DlVI~Na~IiD~~gi~kaDI~IkdGrIaaIG~~gn~~~~~~v~~~~~ig~~tevIDa~G~iV~PG~ID~HvH~~~P~~ 143 (568)
T PRK13985 64 ELDLIITNALIIDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISPQQ 143 (568)
T ss_pred cCCEEEECeEEECCCCcEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEECCCCEEEeCEEEeeCCCCCccH
Confidence 4689999999999777778899999999999987432110 0135789999999999999999999976531
Q ss_pred CCccchHHHHHHHHhCCceEEEeCCC----CCCCCCCcHH--HHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHH
Q 015110 113 TEWEGFPSGTKAAAAGGITTLIDMPL----NSDPSTISTE--TLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL 186 (413)
Q Consensus 113 ~~~e~~~~~~~~al~~GvTTv~d~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 186 (413)
.+.++++||||+++++. ++.|...+.. .++..++.+.. ..+++++++.. .....+++.+++
T Consensus 144 ---------~~~AlagGVTTvI~~G~gP~~~T~p~~~tpg~~~i~~ml~~a~~-~pvn~gf~gkG---~~~~l~eL~el~ 210 (568)
T PRK13985 144 ---------IPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEE-YSMNLGFLGKG---NSSNDASLADQI 210 (568)
T ss_pred ---------HHHHhcCceEEEEccCcCCCCCCCCcCCCCcHHHHHHHHHHhhc-cCccEEEecCC---ccCCHHHHHHHH
Confidence 25699999999999531 3344333322 24555555543 34788877532 223467888889
Q ss_pred HcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHH
Q 015110 187 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE 266 (413)
Q Consensus 187 ~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~ 266 (413)
++|+.+||.+..+ ..++..+.++++.|+++|+++.+|+++..+..
T Consensus 211 ~aGA~GfK~~ed~-------g~t~~~I~~aL~vA~~~dv~V~iHtdtlne~g---------------------------- 255 (568)
T PRK13985 211 EAGAIGFKIHEDW-------GTTPSAINHALDVADKYDVQVAIHTDTLNEAG---------------------------- 255 (568)
T ss_pred HcCCEEEEECCcc-------CCCHHHHHHHHHHHHHcCCEEEEeCCCCCCch----------------------------
Confidence 9999999976322 35788999999999999999999998755310
Q ss_pred HHHHHHHHHHhhcccCCCCCCceEEEEccCCh--hhHHHHHHHHHHCCC
Q 015110 267 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--SSSLDLLMEAKTNGD 313 (413)
Q Consensus 267 ~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~--~~~~~~i~~ak~~G~ 313 (413)
.++. .++.. .|..+|++|+... ..+-++|+-+...++
T Consensus 256 -~~E~--t~aa~-------~gr~iH~~H~egaggghapdi~~~~~~~nv 294 (568)
T PRK13985 256 -CVED--TMAAI-------AGRTMHTFHTEGAGGGHAPDIIKVAGEHNI 294 (568)
T ss_pred -hhHH--HHHHh-------cCCeEEEEeccCCCccchhhHHHHcCCCCc
Confidence 1111 22221 3888999999752 244578888766554
No 43
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=99.90 E-value=2.6e-22 Score=199.29 Aligned_cols=214 Identities=23% Similarity=0.255 Sum_probs=152.6
Q ss_pred CcceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCC--C-------CCCCCcEEecCCCEEeeeeeecccccCCCCC
Q 015110 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWP--R-------NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR 112 (413)
Q Consensus 42 ~~~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~--~-------~~~~~~vID~~G~~vlPGlID~H~H~~~~~~ 112 (413)
..+++|+|++|+|..+...++|.|+||+|++|++..... . ..++.++||++|++|+|||||+|+|+..++
T Consensus 70 ~~DlVI~Na~IiD~~gi~~adI~IkDGrIvaIG~~~~p~~~~gv~~~~~ig~~tevIDaeG~iV~PG~ID~HVH~~~Pg- 148 (573)
T PRK13206 70 APDTVITGAVILDHWGIVKADVGIRDGRIVAIGKAGNPDIMDGVHPDLVIGPSTEIIAGNGRILTAGAIDCHVHFICPQ- 148 (573)
T ss_pred CCCEEEECeEEECCCCeEEEEEEEECCEEEEEeCCCCccccccccccccCCCCCEEEECCCCEEEeCEEeeeeccCCch-
Confidence 358999999999987777889999999999998742110 0 012468999999999999999999987653
Q ss_pred CCccchHHHHHHHHhCCceEEEeCCCC----CCCCCCcHH--HHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHH
Q 015110 113 TEWEGFPSGTKAAAAGGITTLIDMPLN----SDPSTISTE--TLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL 186 (413)
Q Consensus 113 ~~~e~~~~~~~~al~~GvTTv~d~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 186 (413)
..++++++||||+++|+.. +.+...+.. .+....+... ...+|+++++.. +....+++.+++
T Consensus 149 --------~~~aALagGVTTvi~~G~gP~~~t~~~t~t~g~~~l~~~~~aa~-~~pvn~g~~g~g---~~~~~~~L~el~ 216 (573)
T PRK13206 149 --------IVDEALAAGITTLIGGGTGPAEGSKATTVTPGAWHLARMLEALD-GWPVNVALLGKG---NTVSAEALWEQL 216 (573)
T ss_pred --------HHHHHHcCCeEEEEcCCCCccccCcccccccchhHHHHHHHHhh-cCceeEEEecCc---CcCCHHHHHHHH
Confidence 2488999999999997422 122222222 3334444333 467888887632 222356889999
Q ss_pred HcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHH
Q 015110 187 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE 266 (413)
Q Consensus 187 ~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~ 266 (413)
++|+.+||++..+ ..+++.+.++++.|+++|+++.+|+++..+.
T Consensus 217 ~aGA~GfKi~~d~-------g~t~~~i~~aL~~A~~~gv~V~iHadtlne~----------------------------- 260 (573)
T PRK13206 217 RGGAGGFKLHEDW-------GSTPAAIDACLRVADAAGVQVALHSDTLNEA----------------------------- 260 (573)
T ss_pred HCCCcEEeecCcc-------CCCHHHHHHHHHHHHHhCCEEEEECCCcccc-----------------------------
Confidence 9999999987432 3688999999999999999999999876531
Q ss_pred HHHHHHHHHHhhcccCCCCCCceEEEEccCCh--hhHHHHHHHHHHCCC
Q 015110 267 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--SSSLDLLMEAKTNGD 313 (413)
Q Consensus 267 ~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~--~~~~~~i~~ak~~G~ 313 (413)
++.+. .++.. .|..+|++|+... ..+-++|+-+...++
T Consensus 261 -g~~E~-t~aa~-------~gr~iH~~H~egaggghapd~~~~~~~~n~ 300 (573)
T PRK13206 261 -GFVED-TLAAI-------AGRSIHAYHTEGAGGGHAPDIITVASHPNV 300 (573)
T ss_pred -chhhH-HHHHh-------cCCeEEEEeccCCCcCcccHHHHhcCCCCC
Confidence 11122 22221 3899999999752 134568888766654
No 44
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=99.90 E-value=5.7e-22 Score=197.35 Aligned_cols=213 Identities=23% Similarity=0.306 Sum_probs=150.2
Q ss_pred cceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCC-------CCCCCcEEecCCCEEeeeeeecccccCCCCCCCc
Q 015110 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPR-------NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEW 115 (413)
Q Consensus 43 ~~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~-------~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~ 115 (413)
++++|+|++|+|+.+...++|.|+||||++|++...... ..++.++||++|++|+|||||+|+|+..++
T Consensus 67 mDlVI~Na~Vvd~~gi~~adI~I~dGrI~~IG~~~~p~~~~~v~~~~~~~~eVIDa~G~iV~PG~ID~HvH~~~P~---- 142 (568)
T PRK13207 67 VDTVITNALILDHWGIVKADIGIKDGRIVAIGKAGNPDIQDGVDIIIGPGTEVIAGEGLIVTAGGIDTHIHFICPQ---- 142 (568)
T ss_pred CCEEEECeEEECCCCeEEEEEEEECCEEEEEeCCCCccccccccccCCCCCeEEECCCCEEEeCeEECccCCcccc----
Confidence 589999999999876678999999999999987421110 013568999999999999999999987653
Q ss_pred cchHHHHHHHHhCCceEEEeCCCCC----CCCCCc--HHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcC
Q 015110 116 EGFPSGTKAAAAGGITTLIDMPLNS----DPSTIS--TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAG 189 (413)
Q Consensus 116 e~~~~~~~~al~~GvTTv~d~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G 189 (413)
..++++++||||+++|+... .+...+ ...+....+... ...+++++++.. ..+..++++++++.|
T Consensus 143 -----~~~aALagGVTTVi~mg~gP~~gt~~~t~tpG~~~l~~~l~~a~-~~pin~g~~g~g---~~~~~~~L~e~i~aG 213 (568)
T PRK13207 143 -----QIEEALASGVTTMIGGGTGPATGTNATTCTPGPWHIHRMLQAAD-AFPMNIGFLGKG---NASLPEALEEQIEAG 213 (568)
T ss_pred -----HHHHHHcCCCCEEEcCCcCCccCCcccccccchHHHHHHHHHhh-cCCceEEEEcCC---CcccHHHHHHHHHcC
Confidence 25889999999999984211 122212 233444444433 345778776532 223467888899999
Q ss_pred CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHH
Q 015110 190 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI 269 (413)
Q Consensus 190 ~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v 269 (413)
+.+||++..+ ..+++++.+++++|+++|+++.+|+++.... -.+
T Consensus 214 A~gfKi~~d~-------g~t~~~l~~aL~~A~~~gv~V~iHa~tlne~-----------------------------G~~ 257 (568)
T PRK13207 214 AIGLKLHEDW-------GATPAAIDNCLSVADEYDVQVAIHTDTLNES-----------------------------GFV 257 (568)
T ss_pred CCEEeecCCC-------CCCHHHHHHHHHHHHHhCCEEEEeCCCcccc-----------------------------hHH
Confidence 9999987533 2478899999999999999999999765421 011
Q ss_pred HHHHHHHhhcccCCCCCCceEEEEccCCh--hhHHHHHHHHHHCCC
Q 015110 270 RELLTVAKDTRTDGPAEGAHLHIVHLSDA--SSSLDLLMEAKTNGD 313 (413)
Q Consensus 270 ~~~~~~a~~~~~~~~~~g~~vhi~H~s~~--~~~~~~i~~ak~~G~ 313 (413)
+..++ . ..|..+|+.|.... ..+-++++.+...|+
T Consensus 258 e~t~~--a-------~~g~~iH~~H~egaggghapdii~~~~~~~v 294 (568)
T PRK13207 258 EDTIA--A-------FKGRTIHTFHTEGAGGGHAPDIIKVAGEPNV 294 (568)
T ss_pred HHHHH--h-------cCCCEEEEEeecCCCcCCchHHHHHhhcCCC
Confidence 22222 2 13888999998731 133467777777775
No 45
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=99.90 E-value=6.1e-23 Score=205.68 Aligned_cols=269 Identities=20% Similarity=0.267 Sum_probs=152.9
Q ss_pred cceEEEccEEEcCCC---ceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCC---CC--
Q 015110 43 NQYWLTSKRIVTPKG---VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR---TE-- 114 (413)
Q Consensus 43 ~~lli~n~~vi~~~~---~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~---~~-- 114 (413)
|+++|+|++|+++++ ..+++|+|+||+|++|++....+ ++.++||++|++|||||||+|+|+..... ..
T Consensus 1 ~~~~i~~~~vi~~~~~~~~~~g~V~I~dg~I~~vg~~~~~~---~~~~vID~~G~~vlPGlId~H~H~~~~~~~g~~~~~ 77 (445)
T PRK07228 1 MTILIKNAGIVTMNAKREIVDGDVLIEDDRIAAVGDRLDLE---DYDDHIDATGKVVIPGLIQGHIHLCQTLFRGIADDL 77 (445)
T ss_pred CeEEEEccEEEecCCCcEecccEEEEECCEEEEecCCcccC---cCCeEEeCCCCEEecCEEecccCCccccceeccCCC
Confidence 368999999999874 35899999999999999754321 25689999999999999999999975411 10
Q ss_pred ----c--------------cch----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc----CCeeeEEee
Q 015110 115 ----W--------------EGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK----RIYVDVGFW 168 (413)
Q Consensus 115 ----~--------------e~~----~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 168 (413)
| ++. .....+++++||||++|+. +.. .....++...+...+ ....+++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~L~~GvTtv~d~~-~~~---~~~~~~~a~~~~g~r~~~~~~~~~~~~~ 153 (445)
T PRK07228 78 ELLDWLKDRIWPLEAAHDAESMYYSALLGIGELIESGTTTIVDME-SVH---HTDSAFEAAGESGIRAVLGKVMMDYGDD 153 (445)
T ss_pred CHHHHHHhhhhhhhhhCCHHHHHHHHHHHHHHHHhcCceEEEccc-ccc---ChHHHHHHHHHcCCeEEEecceecCCcC
Confidence 0 011 1234566899999999986 211 112223222221110 011111100
Q ss_pred --ceecCCchhhHHHHHHHHHc--CCc--EEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec-CChhhchhhH
Q 015110 169 --GGLVPENAYNASALEALLNA--GVL--GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA-EMEKGSERHV 241 (413)
Q Consensus 169 --~~~~~~~~~~~~~l~~l~~~--G~~--~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~ 241 (413)
........+.+++..++++. |.. .+...+.+. ....+++++++++++.|+++|+++++|+ ++........
T Consensus 154 ~p~~~~~~~~~~l~~~~~~i~~~~g~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~ 230 (445)
T PRK07228 154 VPEGLQEDTEASLAESVRLLEKWHGADNGRIRYAFTPR---FAVSCTEELLRGVRDLADEYGVRIHTHASENRGEIETVE 230 (445)
T ss_pred CCccccccHHHHHHHHHHHHHHhcCCCCCceEEEEeCC---CCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHH
Confidence 00000111223344444432 432 222223332 1234689999999999999999999998 5443322111
Q ss_pred hhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCCh-hhHHHHHHHHHHCCCCEEEEcc
Q 015110 242 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-SSSLDLLMEAKTNGDSITVETC 320 (413)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~-~~~~~~i~~ak~~G~~v~~e~~ 320 (413)
...+ .+ .+ +...+.+ ..+.++.++|++.. ++.++++ ++.|+.++ +|
T Consensus 231 ~~~g-------------~~-------~~----~~l~~~g----~~~~~~~l~H~~~~~~~~~~~~---~~~g~~v~--~~ 277 (445)
T PRK07228 231 EETG-------------MR-------NI----HYLDEVG----LTGEDLILAHCVWLDEEEREIL---AETGTHVT--HC 277 (445)
T ss_pred HHhC-------------CC-------HH----HHHHHCC----CCCCCcEEEEEecCCHHHHHHH---HHcCCeEE--EC
Confidence 1110 00 12 1112211 13567888888743 1445444 55676554 78
Q ss_pred ccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEEcCCCCCCC
Q 015110 321 PHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTV 373 (413)
Q Consensus 321 p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p~~ 373 (413)
|..-. .. ......+++.++.|...++|||+.+++
T Consensus 278 P~~~~-------------~~------~~~~~p~~~~~~~Gv~v~lGtD~~~~~ 311 (445)
T PRK07228 278 PSSNL-------------KL------ASGIAPVPDLLERGINVALGADGAPCN 311 (445)
T ss_pred hHHhh-------------hc------ccccCcHHHHHHCCCeEEEcCCCCccC
Confidence 86110 00 012235778889999999999997753
No 46
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=99.90 E-value=8.1e-22 Score=194.81 Aligned_cols=213 Identities=25% Similarity=0.313 Sum_probs=155.3
Q ss_pred cceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCC--C-------CCCCCcEEecCCCEEeeeeeecccccCCCCCC
Q 015110 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWP--R-------NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT 113 (413)
Q Consensus 43 ~~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~--~-------~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~ 113 (413)
.+++|+|++|++..+...++|.|+||||++|++..... . ...+.++||++|++|+|||||+|+|+..++
T Consensus 65 ~DlVI~Na~IiD~~gi~~adI~IkdGrIvaIG~agnp~~~~~v~~~~~~g~~teVIDaeG~iV~PG~ID~HvH~~~P~-- 142 (567)
T cd00375 65 LDLVITNALIIDYTGIYKADIGIKDGRIVAIGKAGNPDIMDGVTPNMIVGPSTEVIAGEGKIVTAGGIDTHVHFICPQ-- 142 (567)
T ss_pred CCEEEECeEEECCCCcEEEEEEEECCEEEEEecCCCccccccccccccCCCCCeEEECCCCEEeeceEECccCCCCcc--
Confidence 58999999999987767899999999999998753210 0 012568999999999999999999987653
Q ss_pred CccchHHHHHHHHhCCceEEEeCCC------CCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHH
Q 015110 114 EWEGFPSGTKAAAAGGITTLIDMPL------NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLN 187 (413)
Q Consensus 114 ~~e~~~~~~~~al~~GvTTv~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 187 (413)
..++++++||||+++|+. ++.+.......++..++.+.. ..+++++++.. +.+..+++.++++
T Consensus 143 -------~~~aAlagGVTTvI~~G~gP~~gtnatp~t~g~~~l~~ml~aa~~-~pin~g~~gkg---~~~~l~eL~e~~~ 211 (567)
T cd00375 143 -------QIEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAADG-LPVNIGFLGKG---NGSSPDALAEQIE 211 (567)
T ss_pred -------HHHHHHcCCCcEEEcCCcCcccccCCCCCCCCHHHHHHHHHHhhc-CCceEEEEecC---ccccHHHHHHHHH
Confidence 257899999999999721 222333456777777766653 45788887532 2345678889899
Q ss_pred cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHH
Q 015110 188 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 267 (413)
Q Consensus 188 ~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~ 267 (413)
+|+.+||++..+ ..++..+.++++.|+++|+++.+|+++..+..
T Consensus 212 aGA~GfK~~eD~-------g~t~~~i~~aL~~A~~~dv~VaiHadtlne~g----------------------------- 255 (567)
T cd00375 212 AGACGLKLHEDW-------GATPAAIDTCLSVADEYDVQVAIHTDTLNESG----------------------------- 255 (567)
T ss_pred cCCEEEEecCCC-------CCCHHHHHHHHHHHHhhCCEEEEECCCCCcch-----------------------------
Confidence 999999987432 24888999999999999999999998754310
Q ss_pred HHHHHHHHHhhcccCCCCCCceEEEEccCCh--hhHHHHHHHHHHCCC
Q 015110 268 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--SSSLDLLMEAKTNGD 313 (413)
Q Consensus 268 ~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~--~~~~~~i~~ak~~G~ 313 (413)
.++. .++.. .|..+|++|+... ..+-++|+.+...++
T Consensus 256 ~~E~--t~aa~-------~gr~iH~~H~egaggghapdi~~~~~~~nv 294 (567)
T cd00375 256 FVED--TIAAI-------KGRTIHTYHTEGAGGGHAPDIIKVAGHPNV 294 (567)
T ss_pred HHHH--HHHHh-------cCCeEEEEecCCCCcccchHHHHhcCCCCc
Confidence 1122 22322 3899999999752 134567777765544
No 47
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=99.89 E-value=1.7e-21 Score=194.50 Aligned_cols=214 Identities=23% Similarity=0.268 Sum_probs=151.5
Q ss_pred CcceEEEccEEEcC-CCceeeEEEEECCEEEEcccCCCCC--C-------CCCCCcEEecCCCEEeeeeeecccccCCCC
Q 015110 42 YNQYWLTSKRIVTP-KGVISGAVEIKEGNIISIVSEEDWP--R-------NSKTGQVVDYGEAVIMPGLIDVHAHLDDPG 111 (413)
Q Consensus 42 ~~~lli~n~~vi~~-~~~~~~~V~I~dG~I~~Ig~~~~~~--~-------~~~~~~vID~~G~~vlPGlID~H~H~~~~~ 111 (413)
..+++|+|++|+|+ .+...++|.|+||||++|++..... . ...+.++||++|++|+|||||+|+|+..++
T Consensus 67 ~~DlVI~Ng~ViD~~~gi~kaDI~IkdGrI~aIG~~~~p~~~~~v~~~~~~g~~tevIDa~G~iVtPG~ID~HvH~~~P~ 146 (572)
T PRK13309 67 VLDLVITNVTIVDARLGVIKADVGIRDGKIVGIGKSGNPSTMDGVTQGMVVGVSTDAISGEHLILTAAGIDTHIHLISPQ 146 (572)
T ss_pred cCCEEEECeEEEcCCCCEEEEEEEEECCEEEEecCCCccccccccccccccCCCceEEECCCCEEEeCEEEeecccCCcc
Confidence 45899999999996 4556899999999999998743211 0 012468999999999999999999988764
Q ss_pred CCCccchHHHHHHHHhCCceEEEeCCC------CCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHH
Q 015110 112 RTEWEGFPSGTKAAAAGGITTLIDMPL------NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEAL 185 (413)
Q Consensus 112 ~~~~e~~~~~~~~al~~GvTTv~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 185 (413)
. .++++++||||+++++. +..+.......++..++.+.. ..+++++++.. .....+++.++
T Consensus 147 ~---------~~aAl~gGVTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~~a~~-~pvn~g~~gkg---~~~~~~~l~el 213 (572)
T PRK13309 147 Q---------AYHALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLRSIEG-LPVNVGILGKG---NSYGRGPLLEQ 213 (572)
T ss_pred h---------HHHHHcCceEEEEecCCCCccCCCCCCCCCCHHHHHHHHHHhcc-CCcCEEEEcCC---CCCCHHHHHHH
Confidence 2 36899999999997531 222223345567776666653 35788877532 22234677788
Q ss_pred HHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHH
Q 015110 186 LNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWE 265 (413)
Q Consensus 186 ~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E 265 (413)
+++|+.+||++..+ ..+.+.+.+++++|+++|+++.+|+++-.+.
T Consensus 214 ~~aGa~gfk~~~d~-------g~t~~~L~~aLe~A~~~gv~VaiH~d~lnE~---------------------------- 258 (572)
T PRK13309 214 AIAGVAGYKVHEDW-------GATAAALRHALRVADEVDIQVAVHTDSLNEC---------------------------- 258 (572)
T ss_pred HhcCcEEEEecCcC-------CcCHHHHHHHHHHHHhcCCEEEEeCCccccc----------------------------
Confidence 89999999986432 2488899999999999999999999875421
Q ss_pred HHHHHHHHHHHhhcccCCCCCCceEEEEccCCh--hhHHHHHHHHHHCCC
Q 015110 266 EAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--SSSLDLLMEAKTNGD 313 (413)
Q Consensus 266 ~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~--~~~~~~i~~ak~~G~ 313 (413)
+..+.+ +++. .+.++|.+|.... ..+-++|+-+...++
T Consensus 259 --g~vE~~-~aa~-------~grpih~~H~~Gaggghapd~~~~~~~~~~ 298 (572)
T PRK13309 259 --GYVEDT-IDAF-------EGRTIHTFHTEGAGGGHAPDIIKVASQTNV 298 (572)
T ss_pred --hhHHHH-HHHh-------CCCceeeeeccCcccCCchhHHHhcCCCCc
Confidence 112222 3332 4889999998752 144567777765554
No 48
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=99.88 E-value=4.9e-21 Score=190.11 Aligned_cols=265 Identities=20% Similarity=0.230 Sum_probs=153.9
Q ss_pred eEEEccEEEcCCC---ceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCC---CCC-----
Q 015110 45 YWLTSKRIVTPKG---VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRT----- 113 (413)
Q Consensus 45 lli~n~~vi~~~~---~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~---~~~----- 113 (413)
++|+|++|+++++ ..+++|+|+||||++|++....+. +++.++||++|++|+|||||+|+|+..+ +..
T Consensus 1 ~~i~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~~~~-~~~~~viD~~g~~i~PGlid~H~Hl~~~~~~~~~~~~~~ 79 (411)
T cd01298 1 ILIRNGTIVTTDPRRVLEDGDVLVEDGRIVAVGPALPLPA-YPADEVIDAKGKVVMPGLVNTHTHLAMTLLRGLADDLPL 79 (411)
T ss_pred CeEEeeEEEEeCCcceeecceEEEECCEEEEecCcccccc-CCcCeEEeCCCCEEccCccccccchhhHHhhcccCCCCH
Confidence 4799999999853 358899999999999998643211 1357899999999999999999998643 110
Q ss_pred ---------------CccchHH----HHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecC-
Q 015110 114 ---------------EWEGFPS----GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP- 173 (413)
Q Consensus 114 ---------------~~e~~~~----~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 173 (413)
+.++++. .+..++++||||++++. +..+ ...++. .+....+..+.+... ....
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~----~~~~~~-~~~~g~r~~~~~~~~-~~~~~ 152 (411)
T cd01298 80 MEWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTFADMY-FFYP----DAVAEA-AEELGIRAVLGRGIM-DLGTE 152 (411)
T ss_pred HHHHHhhhhhhhhcCCHHHHHHHHHHHHHHHHhcCccEEECcc-ccch----HHHHHH-HHHhCCeEEEEccee-cCCCc
Confidence 1122222 34456789999999987 3221 111111 111111111111111 1100
Q ss_pred ---CchhhHHHHHHHH----HcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec-CChhhchhhHhhcc
Q 015110 174 ---ENAYNASALEALL----NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA-EMEKGSERHVKLED 245 (413)
Q Consensus 174 ---~~~~~~~~l~~l~----~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~~~~~ 245 (413)
......+++.+++ ..|...+|+++++.. ...++.++++++++.|+++|+++.+|+ ++...........+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~ 229 (411)
T cd01298 153 DVEETEEALAEAERLIREWHGAADGRIRVALAPHA---PYTCSDELLREVAELAREYGVPLHIHLAETEDEVEESLEKYG 229 (411)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCCceEEEEeCCC---CccCCHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhC
Confidence 1112233444443 335677888876542 134688999999999999999999996 55433221111100
Q ss_pred CcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccc
Q 015110 246 DTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLA 325 (413)
Q Consensus 246 ~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~ 325 (413)
. ..++... +.+ ..+.++.+.|.+.. . -+.++.+++.|+ ++.+||++-.
T Consensus 230 -------------~-------~~~~~~~----~~~----~~~~~~~i~H~~~l-~-~~~~~~l~~~gi--~~~~~p~~~~ 277 (411)
T cd01298 230 -------------K-------RPVEYLE----ELG----LLGPDVVLAHCVWL-T-DEEIELLAETGT--GVAHNPASNM 277 (411)
T ss_pred -------------C-------CHHHHHH----HcC----CCCCCeEEEEecCC-C-HHHHHHHHHcCC--eEEEChHHhh
Confidence 0 0122111 111 12566677777653 1 134666666774 5568996321
Q ss_pred cccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEEcCCCCC
Q 015110 326 FSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP 371 (413)
Q Consensus 326 l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p 371 (413)
. + +. ..+| +++.++.|...++|||+.+
T Consensus 278 ~----~---~~---~~~~---------~~~~~~~Gv~~~~GsD~~~ 304 (411)
T cd01298 278 K----L---AS---GIAP---------VPEMLEAGVNVGLGTDGAA 304 (411)
T ss_pred h----h---hh---CCCC---------HHHHHHCCCcEEEeCCCCc
Confidence 0 0 10 1233 4566778999999999864
No 49
>TIGR01792 urease_alph urease, alpha subunit. This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.
Probab=99.87 E-value=8.3e-21 Score=189.32 Aligned_cols=174 Identities=24% Similarity=0.307 Sum_probs=125.6
Q ss_pred CcceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCC--CC-----CCCCcEEecCCCEEeeeeeecccccCCCCCCC
Q 015110 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWP--RN-----SKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE 114 (413)
Q Consensus 42 ~~~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~--~~-----~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~ 114 (413)
.++++|+|++|+|..+...++|.|+||||++|++..... .. .+++++||++|++|+|||||+|+|+..+.
T Consensus 65 ~MDlVIkNg~VID~~gi~kaDI~IkDGrIaaIG~~~~p~~~~~v~~~~~~~tEVIDa~GkIV~PGlIDtHvH~~~P~--- 141 (567)
T TIGR01792 65 VLDLVITNALILDWTGIYKADIGIKNGRIVGIGKAGNPDTMDGVDMIVGASTEAISGEGKIVTAGGIDTHVHYISPQ--- 141 (567)
T ss_pred cCcEEEECeEEECCCCeEEEEEEEECCEEEEEcCCCcccccccccccCCCCCeEEECCCCEEEECeEEeecCCCCcc---
Confidence 357999999999976667899999999999998753211 00 12568999999999999999999986542
Q ss_pred ccchHHHHHHHHhCCceEEEeCCC----CCCCCCCcHHHH--HHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHc
Q 015110 115 WEGFPSGTKAAAAGGITTLIDMPL----NSDPSTISTETL--KLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNA 188 (413)
Q Consensus 115 ~e~~~~~~~~al~~GvTTv~d~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 188 (413)
..+.++.+||||+++++. ++.+.......+ ....+... ...++++++... .....+.++++++.
T Consensus 142 ------~~~aAl~gGVTTmI~~Gtgp~~~t~pTt~t~~~~~~~~~l~aa~-~~~in~g~~g~g---~~~~~~~L~e~i~a 211 (567)
T TIGR01792 142 ------QVQAALDNGITTLIGGGTGPADGTNATTCTPGPWYLHRMLQAAD-GLPINFGFTGKG---SGSGPAALIEQIEA 211 (567)
T ss_pred ------HHHHHHhCceEEEecCCCccccCCCCcccccchhhHHHHHHHhc-cCCccEEEEeCC---ccchHHHHHHHHHc
Confidence 368899999999999542 222322222222 22233333 345677765321 12245678888889
Q ss_pred CCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChh
Q 015110 189 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK 235 (413)
Q Consensus 189 G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~ 235 (413)
|+.+||.+..+ ..+++.+.+++++|+++|+++++|+|+..
T Consensus 212 Ga~gfK~h~~y-------~~s~e~L~~al~~A~e~gv~V~iH~ET~~ 251 (567)
T TIGR01792 212 GACGLKVHEDW-------GATPAAIDNALSVADEYDVQVAVHTDTLN 251 (567)
T ss_pred CCcEEEeCCCC-------CCCHHHHHHHHHHHHHcCCEEEEeCCCcc
Confidence 99999976422 46899999999999999999999996654
No 50
>PRK06687 chlorohydrolase; Validated
Probab=99.86 E-value=3.6e-20 Score=184.19 Aligned_cols=182 Identities=19% Similarity=0.245 Sum_probs=113.3
Q ss_pred eEEEccEEEcCCCc----eeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCC---C---
Q 015110 45 YWLTSKRIVTPKGV----ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---E--- 114 (413)
Q Consensus 45 lli~n~~vi~~~~~----~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~---~--- 114 (413)
.+|+|++|+++++. .+++|+|+||+|++||+...... .++.++||++|++|||||||+|+|+.+.... .
T Consensus 2 ~~~~n~~vvt~d~~~~~~~~g~VlV~~g~I~aVg~~~~~~~-~~~~~viD~~g~~v~PGlIn~H~H~~~~~~rg~~~~~~ 80 (419)
T PRK06687 2 KVFQHVNIVTCDQDFHVYLDGILAVKDSQIVYVGQDKPAFL-EQAEQIIDYQGAWIMPGLVNCHTHSAMTGLRGIRDDSN 80 (419)
T ss_pred cceEeeEEEEeCCCceEecCcEEEEECCEEEEecCcccccc-cccCeEEeCCCCEEccceeeeccCCCccccccccCCCC
Confidence 47999999987762 36899999999999998543211 1356899999999999999999999765321 0
Q ss_pred -----------c------cchH----HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEe--ecee
Q 015110 115 -----------W------EGFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF--WGGL 171 (413)
Q Consensus 115 -----------~------e~~~----~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 171 (413)
. +..+ .+..+++++||||++|+. +..+ ......++...+. .....++. +...
T Consensus 81 ~~~wl~~~~~~~~~~~~~~~~~~~~~~a~~e~l~~GvTTv~d~~-~~~~-~~~~~~~~a~~~~---Gir~~~~~~~~~~~ 155 (419)
T PRK06687 81 LHEWLNDYIWPAESEFTPDMTTNAVKEALTEMLQSGTTTFNDMY-NPNG-VDIQQIYQVVKTS---KMRCYFSPTLFSSE 155 (419)
T ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCcceeehhh-cccc-ccHHHHHHHHHHh---CCceEeccccccCC
Confidence 0 1122 234556999999999986 2211 1112222222211 11222221 1111
Q ss_pred cCCchhhHHHHHHHHH----cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec-CChh
Q 015110 172 VPENAYNASALEALLN----AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA-EMEK 235 (413)
Q Consensus 172 ~~~~~~~~~~l~~l~~----~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~ 235 (413)
.....+.+++.+++++ .+...++..+++.. ...++++.++++++.|+++|+++++|+ |+..
T Consensus 156 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~---~~~~s~e~l~~~~~~A~~~g~~i~~H~~e~~~ 221 (419)
T PRK06687 156 TETTAETISRTRSIIDEILKYKNPNFKVMVAPHS---PYSCSRDLLEASLEMAKELNIPLHVHVAETKE 221 (419)
T ss_pred cccHHHHHHHHHHHHHHHhccCCCceEEEEeCCC---CCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHH
Confidence 1111222333444432 33344777776643 235799999999999999999999997 5443
No 51
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=99.86 E-value=1.3e-19 Score=179.14 Aligned_cols=270 Identities=17% Similarity=0.177 Sum_probs=155.2
Q ss_pred EEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCC---CCC-C--------
Q 015110 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRT-E-------- 114 (413)
Q Consensus 47 i~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~---~~~-~-------- 114 (413)
|+|++|+|+. ..+++|+|+||+|++|++..+.+ ++.++||++|++|||||||+|+|+... +.. .
T Consensus 2 ~~~~~~~~~~-~~~~~v~I~~g~I~~Vg~~~~~~---~~~~vID~~g~~v~PGlId~H~H~~~~~~~~~~~~~~~~~~~~ 77 (398)
T cd01293 2 LRNARLADGG-TALVDIAIEDGRIAAIGPALAVP---PDAEEVDAKGRLVLPAFVDPHIHLDKTFTGGRWPNNSGGTLLE 77 (398)
T ss_pred eeeeEEeCCC-ceEEEEEEECCEEEEEecCCCCC---CCCceEeCCCCEEccCEeeeeeccCcccccCCCCCCCccccHH
Confidence 7899999984 46889999999999999865422 367899999999999999999999753 110 0
Q ss_pred -------------ccch----HHHHHHHHhCCceEEEeCCCCCCCCC--CcHHHHHHHHHHHhcCCeeeEEeecee-cCC
Q 015110 115 -------------WEGF----PSGTKAAAAGGITTLIDMPLNSDPST--ISTETLKLKVDAAEKRIYVDVGFWGGL-VPE 174 (413)
Q Consensus 115 -------------~e~~----~~~~~~al~~GvTTv~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 174 (413)
.++. ......++++||||++++. ...+.. ...+.+....+............+... ...
T Consensus 78 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (398)
T cd01293 78 AIIAWEERKLLLTAEDVKERAERALELAIAHGTTAIRTHV-DVDPAAGLKALEALLELREEWADLIDLQIVAFPQHGLLS 156 (398)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHHHHcChhheeeee-cccccccchHHHHHHHHHHHhhccceEEEEeccCccccC
Confidence 0111 2345678999999998875 222210 111222222222221111111100000 001
Q ss_pred chhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccc
Q 015110 175 NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS 254 (413)
Q Consensus 175 ~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~ 254 (413)
..+..+.+++..+.|+..+..+ ... ....+++++++++++.|+++|+++++|+.....- .
T Consensus 157 ~~~~~~~v~~~~~~g~~~~~~~-~~~---~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~-------------~--- 216 (398)
T cd01293 157 TPGGEELMREALKMGADVVGGI-PPA---EIDEDGEESLDTLFELAQEHGLDIDLHLDETDDP-------------G--- 216 (398)
T ss_pred CCCHHHHHHHHHHhCCCEEeCC-CCC---cCCccHHHHHHHHHHHHHHhCCCCEEEeCCCCCc-------------c---
Confidence 1234456677777776433221 111 1135678999999999999999999998533210 0
Q ss_pred cCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCCh-----hhHHHHHHHHHHCCCCEEEEcccccc-cccc
Q 015110 255 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCPHYL-AFSA 328 (413)
Q Consensus 255 ~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~-----~~~~~~i~~ak~~G~~v~~e~~p~~l-~l~~ 328 (413)
...+.+.++.+++.++ ..++.+.|.... ++..+.++..+++|+.++ .||... .+..
T Consensus 217 -----------~~~~~~~~~~~~~~g~-----~~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~--~~p~s~~~l~~ 278 (398)
T cd01293 217 -----------SRTLEELAEEAERRGM-----QGRVTCSHATALGSLPEAEVSRLADLLAEAGISVV--SLPPINLYLQG 278 (398)
T ss_pred -----------hhHHHHHHHHHHHhCC-----CCCEEeeecchhhcCCHHHHHHHHHHHHHcCCeEE--eCCCcchhhcc
Confidence 0123334444544321 135678887643 123467888888887655 677522 1100
Q ss_pred ccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEEcCCCC
Q 015110 329 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS 370 (413)
Q Consensus 329 ~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~ 370 (413)
. . +..|.- .....+.+.++.|+...+|||..
T Consensus 279 -~-~------~~~~~~---~~~~~~~~~~~~Gv~v~lGTD~~ 309 (398)
T cd01293 279 -R-E------DTTPKR---RGVTPVKELRAAGVNVALGSDNV 309 (398)
T ss_pred -c-c------cCCCCC---CCCCcHHHHHHCCCeEEECCCCC
Confidence 0 0 001111 12234556677799999999984
No 52
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=99.85 E-value=8.7e-20 Score=181.85 Aligned_cols=186 Identities=19% Similarity=0.234 Sum_probs=111.5
Q ss_pred cceEEEccEEEcCCC---c-eeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCC---CC--
Q 015110 43 NQYWLTSKRIVTPKG---V-ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG---RT-- 113 (413)
Q Consensus 43 ~~lli~n~~vi~~~~---~-~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~---~~-- 113 (413)
++++|+|+.|++++. . .+++|+|+||+|++||+..... .++++++||++|++|||||||+|+|+.+.. ..
T Consensus 1 ~~~li~~~~v~t~~~~~~~~~~g~V~i~~g~I~~vg~~~~~~-~~~~~~viD~~g~~i~PGlVn~H~H~~~~~~rg~~~~ 79 (435)
T PRK15493 1 MKTTYVNATIVTMNEQNEVIENGYIIVENDQIIDVNSGEFAS-DFEVDEVIDMKGKWVLPGLVNTHTHVVMSLLRGIGDD 79 (435)
T ss_pred CeEEEEccEEEEeCCCCcEecCcEEEEECCEEEEEcCccccc-cCCCCeEEeCCCCEEccceeecccCccchhhhccCCC
Confidence 368999999997653 2 4789999999999999853211 123578999999999999999999997541 10
Q ss_pred ----Cc--------------cch----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeec-e
Q 015110 114 ----EW--------------EGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG-G 170 (413)
Q Consensus 114 ----~~--------------e~~----~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 170 (413)
.| +.. ..+..+++++||||++|+. .... ...+.+.+..+...-+..+....+. +
T Consensus 80 ~~l~~wl~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~-~~~~--~~~~~~~~a~~~~GiR~~~~~~~~~~~ 156 (435)
T PRK15493 80 MLLQPWLETRIWPLESQFTPELAVASTELGLLEMVKSGTTSFSDMF-NPIG--VDQDAIMETVSRSGMRAAVSRTLFSFG 156 (435)
T ss_pred CCHHHHHHhchhhchhcCCHHHHHHHHHHHHHHHHhCCccEEEccc-cccc--cCHHHHHHHHHHcCCcEEEeeeecCCC
Confidence 00 111 1235667999999999986 2111 1122222222211112211111111 0
Q ss_pred ecCCchhhHHHHHHHHHc--C-CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec-CChh
Q 015110 171 LVPENAYNASALEALLNA--G-VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA-EMEK 235 (413)
Q Consensus 171 ~~~~~~~~~~~l~~l~~~--G-~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~ 235 (413)
........+++..++++. + ...++..+.++. ...++++.++++++.|+++|+++++|+ |+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~t~s~e~l~~~~~~A~~~g~~v~~H~~e~~~ 222 (435)
T PRK15493 157 TKEDEKKAIEEAEKYVKRYYNESGMLTTMVAPHS---PYTCSTELLEECARIAVENQTMVHIHLSETER 222 (435)
T ss_pred CCccHHHHHHHHHHHHHHhcCCCCCeEEEEeCCC---CCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHH
Confidence 001111223333333321 1 233555555542 234789999999999999999999997 5544
No 53
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=99.85 E-value=2.1e-19 Score=161.00 Aligned_cols=263 Identities=21% Similarity=0.263 Sum_probs=186.3
Q ss_pred EeeeeeecccccCCCCCCCccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC--CeeeEEeeceecC
Q 015110 96 IMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR--IYVDVGFWGGLVP 173 (413)
Q Consensus 96 vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 173 (413)
-+..-.|.|+|++++. +........+.++...+-|| |..|+..+.+...+++++.... ..-+|.+.+.+.-
T Consensus 6 ~i~rPdDwHlHLRdg~------mL~~V~p~ts~~f~rAiIMP-NL~pPvtt~~~a~aYr~rIl~a~p~~~~F~PLMtlYL 78 (344)
T COG0418 6 TIRRPDDWHLHLRDGA------MLKAVVPYTSRGFGRAIIMP-NLVPPVTTVADALAYRERILKAVPAGHRFTPLMTLYL 78 (344)
T ss_pred eccCccceeEEecCcc------HHHHhhhhhhhhcceEEEcC-CCCCCcccHHHHHHHHHHHHHhCcCCCCCceeEEEEe
Confidence 3456689999999752 22333334455889999999 8888877766665555544211 1113333333322
Q ss_pred CchhhHHHHHHHHHcC-CcEEEEeecCCC-CCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCcc
Q 015110 174 ENAYNASALEALLNAG-VLGLKSFMCPSG-INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR 251 (413)
Q Consensus 174 ~~~~~~~~l~~l~~~G-~~~ik~~~~~~~-~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~ 251 (413)
.+....+++++..++| +.++|.|..... .+.....+.+.+..+++.+++.|+++.+|.|-.+.. .+..
T Consensus 79 td~~~peel~~a~~~g~i~a~KlYPaGaTTNS~~GV~~~~~~~pvle~Mq~~gmpLlvHGEvt~~~----------vDif 148 (344)
T COG0418 79 TDSTTPEELEEAKAKGVIRAVKLYPAGATTNSDSGVTDIEKIYPVLEAMQKIGMPLLVHGEVTDAE----------VDIF 148 (344)
T ss_pred cCCCCHHHHHHHHhcCcEEEEEeccCCccccCcCCcCcHHHHHHHHHHHHHcCCeEEEecccCCcc----------ccch
Confidence 2333568899999888 678999854321 122345678889999999999999999999766541 1111
Q ss_pred ccccCCCCCchHHHHHHHHHHHH-HHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEcccccccccccc
Q 015110 252 SYSTYLKTRPPSWEEAAIRELLT-VAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 330 (413)
Q Consensus 252 ~~~~~~~~~p~~~E~~~v~~~~~-~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~ 330 (413)
+ .|...+..+++ +.++ ++..++.+.|++++ ++++.|+.+ +.++.++++||||+++.++
T Consensus 149 d-----------rE~~Fi~~vl~pl~~~------fP~LKIV~EHiTT~-dav~~v~~~---~~nlaATIT~hHL~~nrnd 207 (344)
T COG0418 149 D-----------REAAFIESVLEPLRQR------FPKLKIVLEHITTK-DAVEYVKDA---NNNLAATITPHHLLLNRND 207 (344)
T ss_pred h-----------hHHHHHHHHHHHHHhh------CCcceEEEEEeccH-HHHHHHHhc---CcceeeEeehhheeeehhh
Confidence 1 34456666665 3444 57999999999999 888888876 3458999999999999998
Q ss_pred CCCCC--cceEEcCCCCChhcHHHHHHHHhcCCc-cEEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHH
Q 015110 331 IPDGD--TRFKCAPPIRDAANKEKLWEALMDGHI-DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLF 401 (413)
Q Consensus 331 ~~~~~--~~~k~~Pplr~~~~~~~L~~~l~~G~i-~~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~ 401 (413)
+..+| +++.|.|-++.+.+|++|.++..+|.. -++|||.+||....|+.. -...|+-+.-..+|++
T Consensus 208 ~l~Ggi~Ph~fClPilKr~~hr~AL~~aa~sg~~kfFlGtDSAPH~~~~Ke~~-----cgcAG~fsap~al~~~ 276 (344)
T COG0418 208 MLVGGIRPHLFCLPILKRETHREALREAATSGHPKFFLGTDSAPHARSRKESA-----CGCAGIFSAPFALPLY 276 (344)
T ss_pred hhcCCCCcceeeeccccchhhHHHHHHHHhcCCCcEEecCCCCCCcccccccc-----cccccccccHhHHHHH
Confidence 87665 889999999999999999999999976 479999999998888631 1334655555566654
No 54
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=99.85 E-value=4.5e-19 Score=172.74 Aligned_cols=290 Identities=19% Similarity=0.198 Sum_probs=161.8
Q ss_pred eEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCc-EEecCCCEEeeeeeecccccCCCCCCC-c--cchHH
Q 015110 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQ-VVDYGEAVIMPGLIDVHAHLDDPGRTE-W--EGFPS 120 (413)
Q Consensus 45 lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~-vID~~G~~vlPGlID~H~H~~~~~~~~-~--e~~~~ 120 (413)
++|+|+++++++.....+|+|+||||++|++..+.+....+.+ ++|++|++|+|||||+|+|+...+... . ..-..
T Consensus 2 ~li~n~~v~~~~~~~~~dvlI~~gkI~~Ig~~~~~~~~~~~~~~i~d~~G~~v~PGlID~HvH~~~gg~~~~~~~~~~e~ 81 (389)
T TIGR01975 2 TLLKGAEVYAPEYIGKKDILIANDKIIAIADEIPSTKDFVPNCVVVGLEGMIAVPGFIDQHVHIIGGGGEGGPTTRTPEL 81 (389)
T ss_pred EEEECcEEEcCCcCcceeEEEECCEEEEEcCCccccccCCCCeEEECCCCCEEccCEeehhhccccccccCCCccCCHHH
Confidence 5899999999876567899999999999998654321111234 556699999999999999987542111 1 12223
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeecee-cCC---chhhHHHHHHHHHcCCcEEE-E
Q 015110 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL-VPE---NAYNASALEALLNAGVLGLK-S 195 (413)
Q Consensus 121 ~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~l~~l~~~G~~~ik-~ 195 (413)
.+.+++++||||++++. ++.......+.+....+.......-.+...+.+ .+. .......+.. ..-+.++| +
T Consensus 82 ~~~e~l~~GvTTv~d~~-g~~~~~~~~~~~~a~~~al~~~Gir~~~~~g~~~~p~~t~t~~~~~d~~~--~d~iiG~~~i 158 (389)
T TIGR01975 82 TLSDITKGGVTTVVGLL-GTDGITRHMESLLAKARALEEEGISCYMLTGAYHVPSRTITGSVESDLLL--IDKVIGVGEI 158 (389)
T ss_pred HHHHHHhCCcEEEecCc-ccCccccChhhHHHHHHHHHHhCCEEEEEcccccCCCcccccchhhheee--ehhhcccceE
Confidence 57788999999999986 333333334433333333332222122221111 000 0011111111 22345563 5
Q ss_pred eecCCCCCCCCCCCHHHHHHHHHHHHhcC----CC--EEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHH
Q 015110 196 FMCPSGINDFPMTNASHIKEGLSVLARYK----RP--LLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI 269 (413)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~A~~~g----~~--v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v 269 (413)
-++.+- ..+.+.++|+++.+.++..| ++ +++|.-+.. ..+
T Consensus 159 a~sd~r---~~~~~~~~l~~~~~~~~~~g~~~~~~g~~~vH~g~~~-------------------------------~~l 204 (389)
T TIGR01975 159 AISDHR---SAQPTVEHLTNMAAEARVGGLLGGKPGIVNFHVGDSK-------------------------------RAL 204 (389)
T ss_pred EEccCc---CCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCch-------------------------------hhH
Confidence 555431 23568899999999999988 88 999985533 145
Q ss_pred HHHHHHHhhcccCCCCCCceEEEEc---cCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCC
Q 015110 270 RELLTVAKDTRTDGPAEGAHLHIVH---LSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD 346 (413)
Q Consensus 270 ~~~~~~a~~~~~~~~~~g~~vhi~H---~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~ 346 (413)
+.++++.++. ++++|..| +....+-++...++.++|..+-.. +| ++ ...+.. .+
T Consensus 205 ~~l~~~~~~~-------di~~~~f~pth~~r~~~l~~~~i~~~~~gg~iDv~-~~----~~---------~~~l~~--~~ 261 (389)
T TIGR01975 205 QPIYELVENT-------DVPITQFLPTHINRNVPLFEAGLEFAKKGGTIDLT-SS----ID---------PQFRKE--GE 261 (389)
T ss_pred HHHHHHHHhc-------CCChhheecCccCCCHHHHHHHHHHHHhCCcEEEe-CC----CC---------ccchhc--cc
Confidence 5556666653 55555554 433213333333344455433322 12 11 000000 11
Q ss_pred hhcHHHHHHHHhcCCc-c--EEcCCCC---CCChhhhccCCCCccccCCCcchHhHHHHHH
Q 015110 347 AANKEKLWEALMDGHI-D--MLSSDHS---PTVPELKLLDEGNFLKAWGGISSLQIFCSLF 401 (413)
Q Consensus 347 ~~~~~~L~~~l~~G~i-~--~i~sDh~---p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~ 401 (413)
....+.+.++++.|.. + +++||+. |+..++. . ....|+.+++.++..+
T Consensus 262 ~~~~~~~~~~~~~Gv~~~~i~isSD~~gs~p~~~~~g-----~--~~~~g~g~~~sl~~~~ 315 (389)
T TIGR01975 262 VAPAEGIKKALEAGVPLEKVTFSSDGNGSQPFFDENG-----E--LTGLGVGSFETLFEEV 315 (389)
T ss_pred cChHHHHHHHHHcCCCcceEEEEeCCCCCCCcccccc-----c--cccCCcCcHHHHHHHH
Confidence 2245567778888964 4 9999974 4322211 1 2356777777666555
No 55
>PRK07583 cytosine deaminase-like protein; Validated
Probab=99.85 E-value=1.3e-19 Score=180.88 Aligned_cols=269 Identities=20% Similarity=0.234 Sum_probs=157.8
Q ss_pred CcceEEEccEEEcC------------CCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCC
Q 015110 42 YNQYWLTSKRIVTP------------KGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDD 109 (413)
Q Consensus 42 ~~~lli~n~~vi~~------------~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~ 109 (413)
...++|+|+++-+. ++...++|.|+||||++|++....+ .+.++||++|++|+|||||+|+|+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~dg~i~~i~~~~~~~---~~~~~id~~g~~v~Pg~id~H~Hld~ 86 (438)
T PRK07583 10 SGRYWLKNARVPAALLEGGVPPGDTLEGLVLVDIEIADGKIAAILPAGGAP---DELPAVDLKGRMVWPCFVDMHTHLDK 86 (438)
T ss_pred CCcEEEeccccccccccCccCCCcCCCCcEEEEEEEECCEEEEEecCCCCC---CCCceecCCCCcccCCcccceecccc
Confidence 35789999886322 1123679999999999999865322 25689999999999999999999865
Q ss_pred CCCC-------------------------Cccc----hHHHHHHHHhCCceEEEeCCCCCCCC--CCcHHHHHHHHHHHh
Q 015110 110 PGRT-------------------------EWEG----FPSGTKAAAAGGITTLIDMPLNSDPS--TISTETLKLKVDAAE 158 (413)
Q Consensus 110 ~~~~-------------------------~~e~----~~~~~~~al~~GvTTv~d~~~~~~~~--~~~~~~~~~~~~~~~ 158 (413)
.... +.++ +..+.+.++.+|+|+++.+. +..+. ....+.+.+..+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~Gtt~vRt~v-d~~~~~~~~~~~~i~~~~~~~~ 165 (438)
T PRK07583 87 GHIWPRSPNPDGTFPGALDAVTADREAHWSAEDLYRRMEFGLRCAYAHGTSAIRTHL-DSFAPQAAISWEVFAELREAWA 165 (438)
T ss_pred ceecCCCCCCCCCHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhChhhEEeee-ccCCCCcccHHHHHHHHHHHhh
Confidence 4100 0122 34566788999999777765 22211 122333333333332
Q ss_pred cCC----eeeEEeeceecCCchhhHHHHHHHHH-c-CCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec-
Q 015110 159 KRI----YVDVGFWGGLVPENAYNASALEALLN-A-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA- 231 (413)
Q Consensus 159 ~~~----~~~~~~~~~~~~~~~~~~~~l~~l~~-~-G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~- 231 (413)
... ...+++++... ...+++.+.+. . |+.+.+.++. ..+++.+.++++.|+++|+++.+|+
T Consensus 166 ~~~~~~~v~~~p~~~~~~----~~~~eL~~~v~~~~gv~g~~~~~~--------~~~d~~l~~i~~lA~~~G~~v~vH~~ 233 (438)
T PRK07583 166 GRIALQAVSLVPLDAYLT----DAGERLADLVAEAGGLLGGVTYMN--------PDLDAQLDRLFRLARERGLDLDLHVD 233 (438)
T ss_pred ccCeEEEEEecChhhccC----chHHHHHHHHHHcCCEEeCCCCCC--------CCHHHHHHHHHHHHHHhCCCcEEeEC
Confidence 221 11122211111 11245555543 3 4555544321 1256799999999999999999999
Q ss_pred CChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCCh-----hhHHHHHH
Q 015110 232 EMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLM 306 (413)
Q Consensus 232 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~-----~~~~~~i~ 306 (413)
|+.+.. ...+..+.+.+.+.+ ...+++++|+... ++.-+.++
T Consensus 234 E~~~~~----------------------------~~~l~~~~~~~~~~G-----~~~~v~i~H~~~l~~~~~~~~~~~i~ 280 (438)
T PRK07583 234 ETGDPA----------------------------SRTLKAVAEAALRNG-----FEGKVTCGHCCSLAVQPEEQAQATIA 280 (438)
T ss_pred CCCCch----------------------------HHHHHHHHHHHHHhC-----CCCCEEEEeccchhcCCHHHHHHHHH
Confidence 433211 012333444443332 1346899998753 12246788
Q ss_pred HHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEEcCCCC
Q 015110 307 EAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS 370 (413)
Q Consensus 307 ~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~ 370 (413)
..++.|+.|+ +||...+..... .....|+.|.....+.|++ .|+.+++|||+.
T Consensus 281 ~la~~gv~vv--~~P~~~~~l~~~------~~~~~p~~~~~~~v~~l~~---aGV~valGtD~~ 333 (438)
T PRK07583 281 LVAEAGIAIV--SLPMCNLYLQDR------QPGRTPRWRGVTLVHELKA---AGIPVAVASDNC 333 (438)
T ss_pred HHHHcCCeEE--ECcchhhhhcCC------CcCCCCCCCCcchHHHHHH---CCCeEEEEeCCC
Confidence 8888887665 788632211100 0111355555455555544 599999999995
No 56
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=99.83 E-value=4.7e-19 Score=177.35 Aligned_cols=180 Identities=17% Similarity=0.202 Sum_probs=110.7
Q ss_pred CcceEEEccEEEcCCC---c-eeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCC---CCC
Q 015110 42 YNQYWLTSKRIVTPKG---V-ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG---RTE 114 (413)
Q Consensus 42 ~~~lli~n~~vi~~~~---~-~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~---~~~ 114 (413)
+.+++|+|+.|++++. . .+++|+|+||+|++|++.......+++.++||++|++|||||||+|+|+.+.. ...
T Consensus 6 ~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~~~~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~g~~~ 85 (443)
T PRK09045 6 PVDLLIEARWIVPVEPAGVVLEDHAVAIRDGRIVAILPRAEARARYAAAETVELPDHVLIPGLINAHTHAAMSLLRGLAD 85 (443)
T ss_pred cccEEEEccEEEEeCCCceEeeccEEEEECCEEEEecCcccccccCCcceEEeCCCCEEecCEeccccChhhHhhhhccC
Confidence 3589999999998763 2 47899999999999998643322223578999999999999999999987531 100
Q ss_pred ---------------------ccch----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeec
Q 015110 115 ---------------------WEGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 169 (413)
Q Consensus 115 ---------------------~e~~----~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (413)
.+.. .....+++++||||++|+.. .+ ...++...+.. -+..+.....
T Consensus 86 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~G~Ttv~d~~~--~~----~~~~~~~~~~G-~R~~~~~~~~- 157 (443)
T PRK09045 86 DLPLMTWLQDHIWPAEGAWVSEEFVRDGTLLAIAEMLRGGTTCFNDMYF--FP----EAAAEAAHQAG-MRAQIGMPVL- 157 (443)
T ss_pred CCCHHHHHHhhhhhhhhccCCHHHHHHHHHHHHHHHHhcCCcEEEeccc--cH----HHHHHHHHHcC-CeEEEecccc-
Confidence 0001 12355678999999999751 11 11121111111 1111111110
Q ss_pred eec----CCchhhHHHHHHHHH--cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015110 170 GLV----PENAYNASALEALLN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (413)
Q Consensus 170 ~~~----~~~~~~~~~l~~l~~--~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e 232 (413)
... ....+.++...++.+ .+...++..+++.. ...++++.++++++.|+++|+++.+|+.
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~l~~~~~~A~~~g~~v~~H~~ 223 (443)
T PRK09045 158 DFPTAWASDADEYLAKGLELHDQWRHHPLISTAFAPHA---PYTVSDENLERIRTLAEQLDLPIHIHLH 223 (443)
T ss_pred cCCCccccCHHHHHHHHHHHHHHhcCCCcEEEEEeCCC---CCCCCHHHHHHHHHHHHHcCCCEEEeec
Confidence 000 011112222223322 24455777766543 2357899999999999999999999984
No 57
>PRK14085 imidazolonepropionase; Provisional
Probab=99.83 E-value=4.7e-19 Score=173.95 Aligned_cols=179 Identities=17% Similarity=0.145 Sum_probs=109.5
Q ss_pred cceEEEc-cEEEcCCC---------ceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCC
Q 015110 43 NQYWLTS-KRIVTPKG---------VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR 112 (413)
Q Consensus 43 ~~lli~n-~~vi~~~~---------~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~ 112 (413)
++++|+| +.|++.+. ..+++|+|+||+|++|++....+ .+.++||++|++|||||||+|+|+...+.
T Consensus 1 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~---~~~~~iD~~g~~v~PGlId~H~Hl~~~~~ 77 (382)
T PRK14085 1 MSTLITNIGELVTNDPELGEGPLGVLRDAAVVVEGGRVAWVGPAADAP---AADERVDAGGRAVLPGFVDSHSHLVFAGD 77 (382)
T ss_pred CcEEEEcccEEEcCCCcccCCCcccccCcEEEEECCEEEEEcCCccCC---CCCeEEeCCCCEEecCeEecCcCccccCC
Confidence 3689999 59998652 23689999999999999864322 35689999999999999999999965321
Q ss_pred C----------------------------Cccch----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHH---
Q 015110 113 T----------------------------EWEGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA--- 157 (413)
Q Consensus 113 ~----------------------------~~e~~----~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~--- 157 (413)
. +.+++ ....+.++++||||+++++. .. ....+.++......
T Consensus 78 r~~~~~~~~~~~~~~~~~i~~~~~~~~~~t~e~~~~~a~~~~~~~l~~G~Ttv~~~~~-~~--~~~~~~~~~~~~~~~~~ 154 (382)
T PRK14085 78 RSAEFAARMAGEPYSAGGIRTTVAATRAASDEELRANVRRLVAEALRQGTTTVETKTG-YG--LTVEDEARSARIAAEFT 154 (382)
T ss_pred hhHHHHhhhcCCCccCCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCceEEEcCCc-CC--CCHHHHHHHHHHHHHhh
Confidence 1 01111 13456789999999999862 11 11122222211111
Q ss_pred hcCCeeeEEeece-ecCCchhhHHH----HHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015110 158 EKRIYVDVGFWGG-LVPENAYNASA----LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (413)
Q Consensus 158 ~~~~~~~~~~~~~-~~~~~~~~~~~----l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e 232 (413)
............. ........++. +...++..+..+|++... ..++.++++++++.|+++|+++.+|+.
T Consensus 155 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~idi~~~~------~~~~~~~l~~~~~~a~~~g~~v~~H~~ 228 (382)
T PRK14085 155 DEVTFLGAHVVPPEYAGDADEYVDLVCGPMLDAVAPHARWIDVFCER------GAFDEDQSRRVLTAGRAAGLGLRVHGN 228 (382)
T ss_pred hcceeeccccCCcccCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC------CCCCHHHHHHHHHHHHHcCCCeEEEeC
Confidence 1100011000000 00111111121 224445567777776532 246889999999999999999999985
Q ss_pred C
Q 015110 233 M 233 (413)
Q Consensus 233 ~ 233 (413)
.
T Consensus 229 ~ 229 (382)
T PRK14085 229 Q 229 (382)
T ss_pred c
Confidence 4
No 58
>PRK05985 cytosine deaminase; Provisional
Probab=99.83 E-value=2.2e-18 Score=169.91 Aligned_cols=261 Identities=17% Similarity=0.140 Sum_probs=155.0
Q ss_pred CcceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCC-------
Q 015110 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE------- 114 (413)
Q Consensus 42 ~~~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~------- 114 (413)
|.+++|+|++++++. ..+|.|+||+|++|++....+ ++.++||++|++|+|||||+|+|+.......
T Consensus 1 ~~~~~i~~~~i~~~~---~~~v~i~~g~i~~i~~~~~~~---~~~~~id~~g~~v~Pg~iD~h~h~~~~~~~~~~~~~~~ 74 (391)
T PRK05985 1 MTDLLFRNVRPAGGA---AVDILIRDGRIAAIGPALAAP---PGAEVEDGGGALALPGLVDGHIHLDKTFWGDPWYPNEP 74 (391)
T ss_pred CCCEEEECcEECCCC---eeEEEEECCEEEEecCCCCCC---CCCcEEECCCCEEecceEeeEEccCccccCCccccCCC
Confidence 357899999999875 569999999999999864322 2567999999999999999999996432110
Q ss_pred c------------------cch----HHHHHHHHhCCceEEEeCCCCCCCCC--CcHHHHHHHHHHHhcCCeeeEEeece
Q 015110 115 W------------------EGF----PSGTKAAAAGGITTLIDMPLNSDPST--ISTETLKLKVDAAEKRIYVDVGFWGG 170 (413)
Q Consensus 115 ~------------------e~~----~~~~~~al~~GvTTv~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (413)
. +++ ....+.++++|+|+++++. ...|.. ...+.+.+..+........++..+..
T Consensus 75 ~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~l~~G~t~vr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 153 (391)
T PRK05985 75 GPSLRERIANERRRRAASGHPAAERALALARAAAAAGTTAMRSHV-DVDPDAGLRHLEAVLAARETLRGLIDIQIVAFPQ 153 (391)
T ss_pred CCCHHHHHHHHHHhhccchhHHHHHHHHHHHHHHhcCcceEEeeE-ccCCCcccchHHHHHHHHHHhhCcccEEEEeccC
Confidence 0 011 1235678999999999986 333321 12233333333332222222221110
Q ss_pred e-cCCchhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCC
Q 015110 171 L-VPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLD 249 (413)
Q Consensus 171 ~-~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~ 249 (413)
. ........+.+++.++.|+. +...+.+. .....+++++.++++.|+++|+++.+|+......
T Consensus 154 ~g~~~~~~~~~ll~~~l~~g~~-~~gg~~p~---~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d~------------ 217 (391)
T PRK05985 154 SGVLSRPGTAELLDAALRAGAD-VVGGLDPA---GIDGDPEGQLDIVFGLAERHGVGIDIHLHEPGEL------------ 217 (391)
T ss_pred ccccCCcCHHHHHHHHHHcCCC-EEeCCCCC---CcCCCHHHHHHHHHHHHHHhCCCcEEeeCCCCCc------------
Confidence 0 00111224567777777864 22222221 1224577899999999999999999997543210
Q ss_pred ccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCCh-----hhHHHHHHHHHHCCCCEEEEcccccc
Q 015110 250 TRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCPHYL 324 (413)
Q Consensus 250 ~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~-----~~~~~~i~~ak~~G~~v~~e~~p~~l 324 (413)
....+.++++.+++++. ..++.+.|+... ++.-+.++..++.|+.|+. |+. +
T Consensus 218 ---------------~~~~~~~~~e~~~~~g~-----~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g~~v~~--~~~-~ 274 (391)
T PRK05985 218 ---------------GAFQLERIAARTRALGM-----QGRVAVSHAFCLGDLPEREVDRLAERLAEAGVAIMT--NAP-G 274 (391)
T ss_pred ---------------cHHHHHHHHHHHHHhCC-----CCCEehhhhhhhhcCCHHHHHHHHHHHHHcCCeEEE--eCC-C
Confidence 01233444554444321 235889998642 1123667888888887652 221 0
Q ss_pred ccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEEcCCCC
Q 015110 325 AFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS 370 (413)
Q Consensus 325 ~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~ 370 (413)
+.. .+ .+.+.++.|...++|||+.
T Consensus 275 ----------~~~---~~---------~~~~l~~~Gv~v~lGtD~~ 298 (391)
T PRK05985 275 ----------SVP---VP---------PVAALRAAGVTVFGGNDGI 298 (391)
T ss_pred ----------CCC---CC---------CHHHHHHCCCeEEEecCCC
Confidence 000 12 2344466699999999984
No 59
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=99.83 E-value=1.4e-18 Score=176.15 Aligned_cols=175 Identities=19% Similarity=0.295 Sum_probs=129.8
Q ss_pred ceEEEccEEEcCCC--ceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchHHH
Q 015110 44 QYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 121 (413)
Q Consensus 44 ~lli~n~~vi~~~~--~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~ 121 (413)
+++|+|++|+++.. ...++|+|+||+|++|++.. +.++||++|++|+|||||+|+|+..+... ++ ..
T Consensus 1 dlli~n~~ivd~~~~~~~~~dI~I~~g~I~~ig~~~-------~~~viDa~G~~v~PG~ID~H~Hi~~~~~~-~~---~~ 69 (552)
T TIGR01178 1 DIVIKNAKIIDVYNGEIIPGDIAIANGHIAGVGKYN-------GVKVIDALGEYAVPGFIDAHIHIESSMLT-PS---EF 69 (552)
T ss_pred CEEEEeeEEEeCCCCcEEeeeEEEECCEEEEecCCC-------CCeEEECCCCEEEeCeEecccccCCCCCC-hh---HH
Confidence 47899999998654 35789999999999998641 35799999999999999999999876543 22 23
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeecee-cC-----Cc-hh-hHHHHHHHHH-cCCcE
Q 015110 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL-VP-----EN-AY-NASALEALLN-AGVLG 192 (413)
Q Consensus 122 ~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~-~~-~~~~l~~l~~-~G~~~ 192 (413)
.+.++.+||||++++| +..+.....+.++..++.+. ...+++.+.... ++ .. .. ..++++++++ .|+.+
T Consensus 70 ~~~al~~GvTtvv~~P-~~~~~v~g~~~~~~~~~~a~-~~~~d~~~~~~s~vp~~~~e~~g~~~~~~~i~~~~~~~~V~g 147 (552)
T TIGR01178 70 AKLVLPHGVTTVVSDP-HEIANVNGEDGINFMLNNAK-KTPLNFYFMLPSCVPALQFETSGAVLTAEDIDELMELDEVLG 147 (552)
T ss_pred HHHHHCCCEEEEEcCC-CCCCCCCCHHHHHHHHHHhh-cCCcEEEEECCCCCCCCcccCCCCccCHHHHHHHHcCCCccE
Confidence 5678999999999999 66666677888888877665 456676443321 11 11 11 3677888886 49999
Q ss_pred EEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChh
Q 015110 193 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK 235 (413)
Q Consensus 193 ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~ 235 (413)
+|.+|.+++. ..+++++.+.++.++++|+++..|++...
T Consensus 148 lke~m~~~~v----~~~d~~~l~~i~~a~~~g~~I~gHap~l~ 186 (552)
T TIGR01178 148 LAEVMDYPGV----INADIEMLNKINSARKRNKVIDGHCPGLS 186 (552)
T ss_pred EEEEecchhh----cCCCHHHHHHHHHHHhCCCEEEecCCCCC
Confidence 9999977531 22444555566899999999999997443
No 60
>PLN02303 urease
Probab=99.82 E-value=4.1e-19 Score=181.32 Aligned_cols=174 Identities=24% Similarity=0.314 Sum_probs=128.7
Q ss_pred CcceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCC--CCC-------CCCCcEEecCCCEEeeeeeecccccCCCCC
Q 015110 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDW--PRN-------SKTGQVVDYGEAVIMPGLIDVHAHLDDPGR 112 (413)
Q Consensus 42 ~~~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~--~~~-------~~~~~vID~~G~~vlPGlID~H~H~~~~~~ 112 (413)
..+++|+|++|+|..+...++|.|+||||++|++.... ... .++.++||++|++|+|||||+|+|+..++.
T Consensus 333 ~~DlVItNa~IID~~Gi~kaDI~IkDGrIvaIGkagnp~i~~gv~~~~~~g~~teVIDAeGlIVtPG~ID~HVHf~~Pg~ 412 (837)
T PLN02303 333 SLDTVITNAVIIDYTGIYKADIGIKDGLIVGIGKAGNPDVMDGVTSNMIVGVNTEVIAGEGMIVTAGGIDCHVHFICPQL 412 (837)
T ss_pred cCCEEEeCeEEECCCCcEEeEEEEECCEEEEecCCCCcccccccccccccCCCCeEEECCCCEEEeCEEEeecCCCCCcH
Confidence 45899999999997777789999999999999974211 010 024689999999999999999999976532
Q ss_pred CCccchHHHHHHHHhCCceEEEeCCC----CCCCCC--CcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHH
Q 015110 113 TEWEGFPSGTKAAAAGGITTLIDMPL----NSDPST--ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL 186 (413)
Q Consensus 113 ~~~e~~~~~~~~al~~GvTTv~d~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 186 (413)
.+.++++||||+++++. ++.+.. .+...++.+++... ...+++++++.. +....+++.+++
T Consensus 413 ---------~~eaLasGVTTai~GGtgp~pnT~ptt~t~g~e~I~~~L~aa~-~~pvn~Gf~gkG---~~s~l~eL~eli 479 (837)
T PLN02303 413 ---------ATEAIASGITTLVGGGTGPAHGTCATTCTPAPSHMKLMLQSTD-DLPLNFGFTGKG---NTAKPEGLHEII 479 (837)
T ss_pred ---------HHHHHHHhHHHHHhcCCCCCCcccCcCCCCCHHHHHHHHHhcc-cCCCcEEEEccC---cccCHHHHHHHH
Confidence 25667777777777642 223333 24677777766443 345788887532 223467788888
Q ss_pred HcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChh
Q 015110 187 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK 235 (413)
Q Consensus 187 ~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~ 235 (413)
++|+.+||.+.. ...+++.+.+++++|+++|+++++|+|+..
T Consensus 480 eaGa~GfK~h~d-------~gvTpelL~raLe~AkelGVpVaIHAEdLn 521 (837)
T PLN02303 480 KAGAMGLKLHED-------WGTTPAAIDNCLDVAEEYDIQVTIHTDTLN 521 (837)
T ss_pred HcCcEEEEECCC-------CCCCHHHHHHHHHHHHHcCCEEEEecCccc
Confidence 899999997632 135788999999999999999999998843
No 61
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=99.82 E-value=1.1e-18 Score=175.23 Aligned_cols=180 Identities=20% Similarity=0.240 Sum_probs=108.9
Q ss_pred eEEEccEEEcCCC----ceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCC-------
Q 015110 45 YWLTSKRIVTPKG----VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT------- 113 (413)
Q Consensus 45 lli~n~~vi~~~~----~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~------- 113 (413)
+++.|+.|+++++ ..+++|+|+||+|++|++..+.+. ++.++||++|++|||||||+|+|+.+....
T Consensus 4 ~i~~~~~v~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~--~~~~vID~~g~~v~PGlVn~H~H~~~~~~~g~~~~~~ 81 (451)
T PRK08203 4 WIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGALPQ--PADEVFDARGHVVTPGLVNTHHHFYQTLTRALPAAQD 81 (451)
T ss_pred EEEeccEEEEeCCCceEeeccEEEEECCEEEEEeCCccCCC--CCCeEEeCCCCEEecceEeccccccchhcccccccCC
Confidence 3455578998776 247899999999999998654321 356899999999999999999999764110
Q ss_pred ----C-------------ccch----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC---CeeeEEe--
Q 015110 114 ----E-------------WEGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR---IYVDVGF-- 167 (413)
Q Consensus 114 ----~-------------~e~~----~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-- 167 (413)
. .+++ ..+..+++++||||++|+. +..+.. ....++...+..... ..+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~-~~~~~~-~~~~~~~~~~a~~~~G~R~~~~~~~~~ 159 (451)
T PRK08203 82 AELFPWLTTLYPVWARLTPEMVRVATQTALAELLLSGCTTSSDHH-YLFPNG-LRDALDDQIEAAREIGMRFHATRGSMS 159 (451)
T ss_pred CcHHHHHHHHhHHHHhCCHHHHHHHHHHHHHHHHhcCcCEEEcce-eecccc-ccchHHHHHHHHHHcCCeEEEecceee
Confidence 0 0111 1344667899999999985 222221 112223323222211 1111110
Q ss_pred ----eceecC-----CchhhHHHHHHHHHcCC-----cEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec
Q 015110 168 ----WGGLVP-----ENAYNASALEALLNAGV-----LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231 (413)
Q Consensus 168 ----~~~~~~-----~~~~~~~~l~~l~~~G~-----~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 231 (413)
..+..+ ...+.++..+++++.+. ..++..+++.. ...++.++++++++.|+++|+++++|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~---~~~~~~e~l~~~~~~A~~~g~~v~~H~ 234 (451)
T PRK08203 160 LGESDGGLPPDSVVEDEDAILADSQRLIDRYHDPGPGAMLRIALAPCS---PFSVSRELMRESAALARRLGVRLHTHL 234 (451)
T ss_pred cCCccCCCCccccccCHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCC---CCcCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 000011 11123444555554321 24555555532 235789999999999999999999997
No 62
>PRK07572 cytosine deaminase; Validated
Probab=99.82 E-value=3.6e-18 Score=169.98 Aligned_cols=270 Identities=16% Similarity=0.169 Sum_probs=156.2
Q ss_pred cceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCC---CCC------
Q 015110 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRT------ 113 (413)
Q Consensus 43 ~~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~---~~~------ 113 (413)
++++|+|++++++. ...+|.|+||+|++|++.... .+.++||++|++|+|||||+|+|+... +..
T Consensus 2 ~~~~i~~~~i~~~~--~~~~i~i~~g~I~~v~~~~~~----~~~~~id~~g~~~~PG~id~h~h~~~~~~~~~~~~~~~g 75 (426)
T PRK07572 2 FDLIVRNANLPDGR--TGIDIGIAGGRIAAVEPGLQA----EAAEEIDAAGRLVSPPFVDPHFHMDATLSYGLPRVNASG 75 (426)
T ss_pred CcEEEECeEECCCC--eeEEEEEECCEEEEecCCCCC----CcCceEeCCCCEEcccceehhhCcchhhccCCCCCCCCC
Confidence 46889999999865 356899999999999875422 245799999999999999999999653 110
Q ss_pred ----------------Cccch----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecC
Q 015110 114 ----------------EWEGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP 173 (413)
Q Consensus 114 ----------------~~e~~----~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (413)
+.+++ ...++.++++|||+++++.....+.......+.+..+... ..++..... +..
T Consensus 76 ~l~e~l~~~~~~~~~~t~edl~~~a~~~~~e~l~~G~Ttvrd~~d~~~~~~~~~~a~~~~~~~~~--~~~~~~~~a-~~~ 152 (426)
T PRK07572 76 TLLEGIALWGELKPLLTQEALVERALRYCDWAVARGLLAIRSHVDVCDPRLLAVEALLEVRERVA--PYLDLQLVA-FPQ 152 (426)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEeeccccCCCcccHHHHHHHHHHHhh--ccceEEEEe-ccC
Confidence 11222 2346678999999999985211222112222222222111 223322110 110
Q ss_pred ----CchhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec-CChhhchhhHhhccCcC
Q 015110 174 ----ENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA-EMEKGSERHVKLEDDTL 248 (413)
Q Consensus 174 ----~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~~~~~~~~ 248 (413)
...+..+.++++++.|++.+... ++. ......+.++++.++++|+++|+++.+|+ +..+...
T Consensus 153 ~g~~~~~~~~~~~~~~l~~g~d~iGg~--p~~-~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~---------- 219 (426)
T PRK07572 153 DGVLRSPGAVDNLERALDMGVDVVGGI--PHF-ERTMADGAESVRLLCEIAAERGLRVDMHCDESDDPLS---------- 219 (426)
T ss_pred hhhccCccHHHHHHHHHHcCCCEEeCC--CCC-ccccchHHHHHHHHHHHHHHcCCCeEEEECCCCChhH----------
Confidence 11123557788888887665211 110 00011234899999999999999999998 4443211
Q ss_pred CccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCCh-----hhHHHHHHHHHHCCCCEEEEccccc
Q 015110 249 DTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCPHY 323 (413)
Q Consensus 249 ~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~-----~~~~~~i~~ak~~G~~v~~e~~p~~ 323 (413)
..+.+..+...+.|+ .+ ++.+.|+... ...-+.++..+++|+.|+ .||..
T Consensus 220 ------------------~~~~~~~~~~~~~G~----~~-~v~~~H~~~l~~~~~~~~~~~~~~la~~g~~vv--~~P~~ 274 (426)
T PRK07572 220 ------------------RHIETLAAETQRLGL----QG-RVAGSHLTSMHSMDNYYVSKLIPLMAEAGVNAI--ANPLI 274 (426)
T ss_pred ------------------HHHHHHHHHHHHhCC----CC-CEEEEccchhhcCCHHHHHHHHHHHHHcCCeEE--ECchh
Confidence 123333333344332 23 6788888642 023456677777776655 67742
Q ss_pred -cccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEEcCCCC
Q 015110 324 -LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS 370 (413)
Q Consensus 324 -l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~ 370 (413)
+.+... ....|.-+.. ..+.+.++.|+..++|||+.
T Consensus 275 n~~l~~~--------~~~~~~~~g~---~~v~~l~~~GV~v~lGtD~~ 311 (426)
T PRK07572 275 NITLQGR--------HDTYPKRRGM---TRVPELMAAGINVAFGHDCV 311 (426)
T ss_pred hhhhcCC--------CCCCCCCCCC---cCHHHHHHCCCcEEEecCCC
Confidence 222100 0001211222 23455566799999999984
No 63
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=99.82 E-value=1.6e-18 Score=173.41 Aligned_cols=186 Identities=18% Similarity=0.157 Sum_probs=106.3
Q ss_pred eEEEccEEEcCCC---c-eeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCC---CC----
Q 015110 45 YWLTSKRIVTPKG---V-ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG---RT---- 113 (413)
Q Consensus 45 lli~n~~vi~~~~---~-~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~---~~---- 113 (413)
++|+|++|++.++ . .+++|+|+||+|++||+........++.++||++|++|+|||||+|+|+.+.. ..
T Consensus 2 ~li~~~~i~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~~~~~~~viD~~g~lv~PGfID~H~H~~~~~~rg~~~~~~ 81 (442)
T PRK07203 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAKYPDAEFIDAKGKLIMPGLINSHNHIYSGLARGMMANIP 81 (442)
T ss_pred EEEECCEEEeCCCCCceeeccEEEEECCEEEEEeCchhhccccCCCeEEeCCCCEEecceeeccccchhhhhcccccccC
Confidence 5899999997543 2 36899999999999996432211113568999999999999999999986431 10
Q ss_pred --------------------CccchH----HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc---CCeeeEE
Q 015110 114 --------------------EWEGFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK---RIYVDVG 166 (413)
Q Consensus 114 --------------------~~e~~~----~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 166 (413)
+.++++ .+..+++++||||++|+... +... ....+...+.... +..+.+.
T Consensus 82 ~~~~l~~~l~~~~~~~~~~~t~e~~~~~a~~~~~e~l~~GtTt~~d~~~~--~~~~-~~~~~~~~~a~~~~GiR~~~~~~ 158 (442)
T PRK07203 82 PPPDFISILKNLWWRLDRALTLEDVYYSALICSLEAIKNGVTTVFDHHAS--PNYI-GGSLFTIADAAKKVGLRAMLCYE 158 (442)
T ss_pred CCCCHHHHHHhheehhhhcCCHHHHHHHHHHHHHHHHHcCceEEEccccc--cccc-cchHHHHHHHHHHhCCeEEEecc
Confidence 001111 22356799999999998521 1100 1112222222221 1111111
Q ss_pred eeceecCC-chhhHHHHHHHHH--cCC--cEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec-CChhh
Q 015110 167 FWGGLVPE-NAYNASALEALLN--AGV--LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA-EMEKG 236 (413)
Q Consensus 167 ~~~~~~~~-~~~~~~~l~~l~~--~G~--~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~ 236 (413)
+...-... ..+.+++..++++ .+. ..+...++++. ...++++.++++.+.|+++|+++++|. |+..+
T Consensus 159 ~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~---~~~~s~~~l~~~~~lA~~~g~~i~~H~~E~~~e 231 (442)
T PRK07203 159 TSDRDGEKELQEGVEENIRFIKHIDEAKDDMVEAMFGLHA---SFTLSDATLEKCREAVKETGRGYHIHVAEGIYD 231 (442)
T ss_pred cccCCcchhHHHHHHHHHHHHHHhcCCCCCceEEEEccCC---CcCcCHHHHHHHHHHHHHcCCcEEEEecCChHH
Confidence 10000000 0111222223322 111 12444455542 235688999999999999999999996 55544
No 64
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=99.81 E-value=7.4e-19 Score=177.71 Aligned_cols=185 Identities=16% Similarity=0.186 Sum_probs=108.8
Q ss_pred ceEEEccEEEcCCC-----ceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCC-------C
Q 015110 44 QYWLTSKRIVTPKG-----VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP-------G 111 (413)
Q Consensus 44 ~lli~n~~vi~~~~-----~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~-------~ 111 (413)
.++|+|+.|++.++ ..+++|+|+||+|++|++.... ++.++||++|++|||||||+|+|+... .
T Consensus 2 ~~li~~~~v~~~d~~~~~~~~~~~VlVe~g~I~~Vg~~~~~----~~~~viD~~g~~vlPGlVdaH~Hl~~~~~~~~~~~ 77 (488)
T PRK06151 2 RTLIKARWVLGFDDGDHRLLRDGEVVFEGDRILFVGHRFDG----EVDRVIDAGNALVGPGFIDLDALSDLDTTILGLDN 77 (488)
T ss_pred eEEEEccEEEEEcCCCCeEEeCcEEEEECCEEEEecCCCCC----CCCeEEeCCCCEEecCEEeeecccchhhhhccccc
Confidence 68999999965443 2478999999999999975321 245799999999999999999996421 0
Q ss_pred C-----C----------------Cccch----HHHHHHHHhCCceEEEeCCCCCCCC-CCcHHHHHHHHHHHhc-CCeee
Q 015110 112 R-----T----------------EWEGF----PSGTKAAAAGGITTLIDMPLNSDPS-TISTETLKLKVDAAEK-RIYVD 164 (413)
Q Consensus 112 ~-----~----------------~~e~~----~~~~~~al~~GvTTv~d~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~ 164 (413)
. . +.+++ ..+..+++++||||++|+....... ......+....+.... .....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~t~e~~~~~a~~~~~e~L~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~a~~~~GiR~~ 157 (488)
T PRK06151 78 GPGWAKGRVWSRDYVEAGRREMYTPEELAFQKRYAFAQLLRNGITTAMPIASLFYRQWAETYAEFAAAAEAAGRLGLRVY 157 (488)
T ss_pred chhHHhcccCchhhhhcchhhcCCHHHHHHHHHHHHHHHHhcCeeEEehhhhhhccccccccchHHHHHHHHHHcCCeEE
Confidence 0 0 00111 1345678999999999874111110 1111112222222211 11111
Q ss_pred EE--eec-e--------ecC-----CchhhHHH----HHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 015110 165 VG--FWG-G--------LVP-----ENAYNASA----LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYK 224 (413)
Q Consensus 165 ~~--~~~-~--------~~~-----~~~~~~~~----l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g 224 (413)
++ +.. + ..+ ...+.+++ +++....|+..+|..+++.. ...++.++++++++.|+++|
T Consensus 158 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~i~~~~~p~~---~~~~s~e~l~~~~~~A~~~g 234 (488)
T PRK06151 158 LGPAYRSGGSVLEADGSLEVVFDEARGLAGLEEAIAFIKRVDGAHNGLVRGMLAPDR---IETCTVDLLRRTAAAARELG 234 (488)
T ss_pred ecchhccCccccccCCCCCccccchhHHHHHHHHHHHHHHhhcccCCceEEEEcCCC---CCCCCHHHHHHHHHHHHHCC
Confidence 11 000 0 000 00111222 23333346666777665532 23578999999999999999
Q ss_pred CCEEEec-CChh
Q 015110 225 RPLLVHA-EMEK 235 (413)
Q Consensus 225 ~~v~~H~-e~~~ 235 (413)
+++++|+ +...
T Consensus 235 ~~v~~H~~e~~~ 246 (488)
T PRK06151 235 CPVRLHCAQGVL 246 (488)
T ss_pred CcEEEEECCchH
Confidence 9999998 5543
No 65
>PRK06380 metal-dependent hydrolase; Provisional
Probab=99.81 E-value=3.6e-18 Score=169.91 Aligned_cols=175 Identities=17% Similarity=0.289 Sum_probs=106.1
Q ss_pred ceEEEccEEEcCCC---ceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCC------
Q 015110 44 QYWLTSKRIVTPKG---VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE------ 114 (413)
Q Consensus 44 ~lli~n~~vi~~~~---~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~------ 114 (413)
+++|+|++|++++. ..+++|+|+||+|++||+... .+.++||++|++|+|||||+|+|+.+.....
T Consensus 2 ~~li~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~-----~~~~viD~~g~~v~PG~Vd~H~Hl~~~~~rg~~~~~~ 76 (418)
T PRK06380 2 SILIKNAWIVTQNEKREILQGNVYIEGNKIVYVGDVNE-----EADYIIDATGKVVMPGLINTHAHVGMTASKGLFDDVD 76 (418)
T ss_pred eEEEEeeEEEECCCCceeeeeeEEEECCEEEEecCCCC-----CCCEEEECCCCEEccCEEeeccCCCccccCCcccCCC
Confidence 57999999998753 347899999999999997532 2458999999999999999999997652210
Q ss_pred ----------------ccchH----HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeece-ecC
Q 015110 115 ----------------WEGFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG-LVP 173 (413)
Q Consensus 115 ----------------~e~~~----~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 173 (413)
.++++ .+..+++++||||++|+... .+.+.+..+...-+..+.+..... ...
T Consensus 77 l~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~l~~G~Tt~~d~~~~-------~~~~~~a~~~~G~r~~~~~~~~~~~~~~ 149 (418)
T PRK06380 77 LEEFLMKTFKYDSKRTREGIYNSAKLGMYEMINSGITAFVDLYYS-------EDIIAKAAEELGIRAFLSWAVLDEEITT 149 (418)
T ss_pred HHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHhcCCeEEEccccC-------hHHHHHHHHHhCCeEEEecccccCCccc
Confidence 11111 24556799999999998621 122222111111112121111100 000
Q ss_pred CchhhHHHHHHHHH--cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015110 174 ENAYNASALEALLN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (413)
Q Consensus 174 ~~~~~~~~l~~l~~--~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~ 233 (413)
......+...++++ .+..-+...+++.+ ...+++++++++++.|+++|+++++|+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~s~e~l~~~~~~A~~~g~~v~~H~~e 208 (418)
T PRK06380 150 QKGDPLNNAENFIREHRNEELVTPSIGVQG---IYVANDETYLKAKEIAEKYDTIMHMHLSE 208 (418)
T ss_pred ccchHHHHHHHHHHHhcCCCCeEEEEECCC---CccCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 00111222233322 11112344444433 23578999999999999999999999744
No 66
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=99.81 E-value=3.9e-18 Score=170.26 Aligned_cols=190 Identities=17% Similarity=0.149 Sum_probs=108.6
Q ss_pred eEEEccEEEcCCC---c-eeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCC-----C--
Q 015110 45 YWLTSKRIVTPKG---V-ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR-----T-- 113 (413)
Q Consensus 45 lli~n~~vi~~~~---~-~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-----~-- 113 (413)
++|+|++|++++. . .+++|+|+||+|++|++..+.....++.++||++|++|+|||||+|+|+.+... .
T Consensus 1 ~li~~~~i~t~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~~~~~id~~g~~v~PG~vd~H~H~~~~~~rg~~~d~~ 80 (441)
T TIGR03314 1 LLIGNGTAVQLDPTRPIQEGGDIAIDGDVIKAVGPTEELKQKYPEATFIDAKGKLIMPGFINTHNHFYSTFARGMMADIP 80 (441)
T ss_pred CEEECCEEEecCCCCceEeccEEEEECCEEEEEcCchhhcccCCCCeEEeCCCCEEecCeeecccchhhhhhccccccCC
Confidence 4789999996543 2 478999999999999975322211135678999999999999999999965311 0
Q ss_pred ---Cc-----------------cchH----HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeec
Q 015110 114 ---EW-----------------EGFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 169 (413)
Q Consensus 114 ---~~-----------------e~~~----~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (413)
.. ++++ .++.+++++||||++|+...........+.+.+......-+..+.+.+..
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~ 160 (441)
T TIGR03314 81 PPPDFISILKNLWWRLDRALTLEDVYYSGLICSLDAIKSGCTTVIDHHASPNAITGSLSTIRKAADEAGLRTMLCYETSD 160 (441)
T ss_pred CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHcCCeEEEecccccccccchHHHHHHHHHHhCCeEEEeeeeec
Confidence 00 1111 12345789999999998521110111112221111111112222222211
Q ss_pred eec-CCchhhHHHHHHHHH--cCC--cEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec-CChhhc
Q 015110 170 GLV-PENAYNASALEALLN--AGV--LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA-EMEKGS 237 (413)
Q Consensus 170 ~~~-~~~~~~~~~l~~l~~--~G~--~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~ 237 (413)
... ....+.+++..++++ .+. ..++..++++. ...++++.++++.+.|+++|+++++|+ |+..+.
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~p~~---~~t~s~~~l~~~~~lA~~~~~~i~~H~~E~~~e~ 231 (441)
T TIGR03314 161 RDGGKEMQEGVEENIAFIKKSSGKEPYLVEAHIGAHA---PFTVSDAGLEMCREAVQATGRGFHIHVAEDIYDV 231 (441)
T ss_pred CCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCC---CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHH
Confidence 000 011112222333322 121 12455555542 235789999999999999999999996 665543
No 67
>PRK08204 hypothetical protein; Provisional
Probab=99.81 E-value=1.2e-17 Score=167.70 Aligned_cols=263 Identities=19% Similarity=0.190 Sum_probs=146.4
Q ss_pred CcceEEEccEEEcCCC----ceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCC----
Q 015110 42 YNQYWLTSKRIVTPKG----VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---- 113 (413)
Q Consensus 42 ~~~lli~n~~vi~~~~----~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~---- 113 (413)
|.+++|+|++|++.++ ..+++|+|+||+|++|++..+. ++.++||++|++|+|||||+|+|+.+....
T Consensus 1 ~~~~li~~~~v~~~~~~~~~~~~~~v~V~~g~I~~Vg~~~~~----~~~~viD~~g~~v~PGlId~H~H~~~~~~~~~~~ 76 (449)
T PRK08204 1 MKRTLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPSIEA----PDAEVVDARGMIVMPGLVDTHRHTWQSVLRGIGA 76 (449)
T ss_pred CCcEEEECcEEEecCCCCCccccceEEEECCEEEEecCCCCC----CCCeEEeCCCCEEecCEEeeeeccchhhhccccC
Confidence 3578999999997553 2478999999999999986432 256799999999999999999998642110
Q ss_pred C-------------------ccch----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc---CCeeeEEe
Q 015110 114 E-------------------WEGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK---RIYVDVGF 167 (413)
Q Consensus 114 ~-------------------~e~~----~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 167 (413)
. .++. ......++++||||++++... .. .........+.... +..+....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~L~~GvTtv~d~~~~-~~---~~~~~~~~~~~~~~~G~r~~~~~~~ 152 (449)
T PRK08204 77 DWTLQTYFREIHGNLGPMFRPEDVYIANLLGALEALDAGVTTLLDWSHI-NN---SPEHADAAIRGLAEAGIRAVFAHGS 152 (449)
T ss_pred CCcHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHhcCCeEEeecccc-cC---ChhHHHHHHHHHHHcCCeEEEEccc
Confidence 0 0011 133457899999999997621 11 11122222222221 11111111
Q ss_pred ec--eec--CCchhhHHHHHHHH---HcCCcE-EEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchh
Q 015110 168 WG--GLV--PENAYNASALEALL---NAGVLG-LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSER 239 (413)
Q Consensus 168 ~~--~~~--~~~~~~~~~l~~l~---~~G~~~-ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~ 239 (413)
.. ... ....+..+.++.+. ..++.. +...+...+ ..+++++.++++++.|+++|+++.+|+......
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~-- 227 (449)
T PRK08204 153 PGPSPYWPFDSVPHPREDIRRVKKRYFSSDDGLLTLGLAIRG---PEFSSWEVARADFRLARELGLPISMHQGFGPWG-- 227 (449)
T ss_pred cCCCCCCCcchhhhhHHHHHHHHHhhccCCCCceEEEEecCC---cccCCHHHHHHHHHHHHHcCCcEEEEEcCCCcc--
Confidence 00 000 00111223333332 233332 223233322 134678899999999999999999998432110
Q ss_pred hHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEc
Q 015110 240 HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVET 319 (413)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~ 319 (413)
.+ ...++.+.+ .+ ..+.+..+.|++.. . -+.++..++.|+.++ +
T Consensus 228 --------~~----------------~~~~~~l~~----~g----~~~~~~~i~H~~~~-~-~~~~~~la~~g~~v~--~ 271 (449)
T PRK08204 228 --------AT----------------PRGVEQLHD----AG----LLGPDLNLVHGNDL-S-DDELKLLADSGGSFS--V 271 (449)
T ss_pred --------cC----------------CCHHHHHHH----CC----CCCCCeEEEecCCC-C-HHHHHHHHHcCCCEE--E
Confidence 00 012222222 21 13566778888754 1 234556666776665 7
Q ss_pred cccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEEcCCCCCC
Q 015110 320 CPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 372 (413)
Q Consensus 320 ~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p~ 372 (413)
||.+-.. .+. -.+| +.+.++.|...++|||+.+.
T Consensus 272 ~P~~~~~-------~g~---~~~~---------~~~~~~~Gv~v~lGtD~~~~ 305 (449)
T PRK08204 272 TPEIEMM-------MGH---GYPV---------TGRLLAHGVRPSLGVDVVTS 305 (449)
T ss_pred ChHHHhh-------hcC---CCCc---------HHHHHhcCCceeeccccCCC
Confidence 8852110 011 0233 23445669999999998653
No 68
>PRK09237 dihydroorotase; Provisional
Probab=99.80 E-value=5.2e-18 Score=166.56 Aligned_cols=179 Identities=20% Similarity=0.314 Sum_probs=118.7
Q ss_pred eEEEccEEEcCCCc--eeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchHHHH
Q 015110 45 YWLTSKRIVTPKGV--ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 122 (413)
Q Consensus 45 lli~n~~vi~~~~~--~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~ 122 (413)
++|+|++|+|+... ..++|+|+||||++|++....+ .+.++||++|++|+|||||+|+|+..++ ...+. +..
T Consensus 1 ~~i~~~~v~d~~~~~~~~~~v~i~~g~I~~v~~~~~~~---~~~~~iD~~g~~v~PG~iD~H~H~~~~~-~~~~~--~~~ 74 (380)
T PRK09237 1 LLLRGGRVIDPANGIDGVIDIAIEDGKIAAVAGDIDGS---QAKKVIDLSGLYVSPGWIDLHVHVYPGS-TPYGD--EPD 74 (380)
T ss_pred CEEEeEEEECCCCCcccceEEEEECCEEEEecCCCCCC---CCCeEEECCCCEEecCEEEeeecCCCCC-CccCC--CHH
Confidence 47999999997653 4689999999999998754321 2568999999999999999999998543 22222 456
Q ss_pred HHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHH-hc--CCeeeEEeeceecCCc-----hhhHHHHHHHHH---cCCc
Q 015110 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA-EK--RIYVDVGFWGGLVPEN-----AYNASALEALLN---AGVL 191 (413)
Q Consensus 123 ~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~-----~~~~~~l~~l~~---~G~~ 191 (413)
+.++.+||||+++++ +..+ .+.+.+....... .. ..++++.+++...+.. ....+++++++. .|+.
T Consensus 75 ~~~~~~G~Ttv~~~~-~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 151 (380)
T PRK09237 75 EVGVRSGVTTVVDAG-SAGA--DNFDDFRKLTIEASKTRVLAFLNISRIGLLAQDELADLEDIDADAVAEAVKRNPDFIV 151 (380)
T ss_pred HHHHhCCcCEEEECC-CCCC--CCHHHHHHHHHhhhCcEEEEEEeeecccccccchhcCHhHCCHHHHHHHHHhCcCcEE
Confidence 789999999999998 4332 4555555544433 11 2344555443332211 113466777765 4799
Q ss_pred EEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChh
Q 015110 192 GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK 235 (413)
Q Consensus 192 ~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~ 235 (413)
++|.+|.+...... ..+ .++...+.+++.|+++.+|+++..
T Consensus 152 glk~~~~~~v~~~~-~~~--~~~~~~~~a~~~g~~v~~H~~~~~ 192 (380)
T PRK09237 152 GIKARMSSSVVGDN-GIE--PLELAKAIAAEANLPLMVHIGNPP 192 (380)
T ss_pred EEEEEEeccccccc-CCc--hHHHHHHHHHhcCCCEEEEcCCCC
Confidence 99998865421111 113 334444556689999999997654
No 69
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.80 E-value=1.2e-18 Score=162.41 Aligned_cols=239 Identities=21% Similarity=0.234 Sum_probs=149.8
Q ss_pred CcceEEEccEEEcCCCc--eeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchH
Q 015110 42 YNQYWLTSKRIVTPKGV--ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 119 (413)
Q Consensus 42 ~~~lli~n~~vi~~~~~--~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~ 119 (413)
.++++|+++.|+|+.+. +..+|.|+||+|++|++...... -+.++||+.|++|.|||||+|+|.+...+.+
T Consensus 5 ~YD~ViR~g~ifDGtGnp~f~tdvgIrDGvIaav~kg~~dg~--~~~eevDaagriVaPGFIDvHtHyD~~~~~d----- 77 (579)
T COG3653 5 TYDVVIRDGLIFDGTGNPPFTTDVGIRDGVIAAVAKGALDGT--GCPEEVDAAGRIVAPGFIDVHTHYDAEVLLD----- 77 (579)
T ss_pred eeeEEEeeceEEeCCCCCccccccccccceEEEEeccccccc--CCCeeecccCcEecccEEEeeecccceeeec-----
Confidence 47999999999999874 57899999999999998654321 2458999999999999999999987542221
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCc----------------------------HHHHHHHHHHHhcCCe-eeEEeece
Q 015110 120 SGTKAAAAGGITTLIDMPLNSDPSTIS----------------------------TETLKLKVDAAEKRIY-VDVGFWGG 170 (413)
Q Consensus 120 ~~~~~al~~GvTTv~d~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~-~~~~~~~~ 170 (413)
...+..+.+||||++...|...-...+ ...+.++++..+..+. +|+....+
T Consensus 78 ~~l~psv~hGVTTVv~GNCgis~ap~n~ed~d~l~s~ve~v~~e~~~~~~~~~~~w~tf~eyleale~~plgvnv~allg 157 (579)
T COG3653 78 PGLRPSVRHGVTTVVLGNCGISTAPANSEDADDLFSRVEAVGREFVFGALRDNQTWSTFAEYLEALEALPLGVNVSALLG 157 (579)
T ss_pred CCccchhhcCeeEEEecCcccccccCChhhhhhhhhhhhhcCccccccccccccccCCHHHHHHHHHhCccCCChhhhcc
Confidence 235667899999999876533211111 2233344444433222 33332111
Q ss_pred ----------e---cCCc--hh----hHHHHHHHHHcCCcEEEEe--------ecCCCCCCCCCCCHHHHHHHHHHHHhc
Q 015110 171 ----------L---VPEN--AY----NASALEALLNAGVLGLKSF--------MCPSGINDFPMTNASHIKEGLSVLARY 223 (413)
Q Consensus 171 ----------~---~~~~--~~----~~~~l~~l~~~G~~~ik~~--------~~~~~~~~~~~~~~~~l~~~~~~A~~~ 223 (413)
. +.+. +. +.+.+++.+++|+.+++.- ..+.. ...+.-+.+ +..+..-..++
T Consensus 158 H~aLR~avmg~~~a~~~p~TeaelaaMaallreAlEaGalGmS~~~~~~~~tgd~~p~-~~l~~~t~e-l~~la~~va~a 235 (579)
T COG3653 158 HSALRTAVLGLDRATDDPPTEAELAAMAALLREALEAGALGMSMDAAIDKLTGDRYPS-RALPFATWE-LRRLAISVARA 235 (579)
T ss_pred hHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhccccccchhhhcccccccccCC-cccCcchHH-HHHHHHHHHHh
Confidence 0 0111 11 2345566677899888721 11110 111223444 44444444456
Q ss_pred CC--CEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCCh---
Q 015110 224 KR--PLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--- 298 (413)
Q Consensus 224 g~--~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~--- 298 (413)
|. .-.+|-.++.. ++.+++.+++++..+ ..++++.++|....
T Consensus 236 g~~iLqst~d~~ega---------------------------a~L~~l~~a~ri~~R------~~~vr~v~s~~a~ag~~ 282 (579)
T COG3653 236 GGRILQSTHDRDEGA---------------------------AALEALLEASRIGNR------RKGVRMVMSHSADAGSM 282 (579)
T ss_pred cCceeEeeccccchH---------------------------HHHHHHHHHHHhcCc------ccCceEEEecccccccc
Confidence 65 44666544321 356678888888732 24899999997532
Q ss_pred -----hhHHHHHHHHHHCCCCEEEEcccc
Q 015110 299 -----SSSLDLLMEAKTNGDSITVETCPH 322 (413)
Q Consensus 299 -----~~~~~~i~~ak~~G~~v~~e~~p~ 322 (413)
...+.++.+++..|..|.++.+|.
T Consensus 283 n~~~a~~~lgl~~kaq~~G~pVg~~~~p~ 311 (579)
T COG3653 283 NWGVAVFGLGLIEKAQLLGSPVGFDHYPY 311 (579)
T ss_pred chhhhhhccchHHHHHHhCCcceeeeccc
Confidence 256789999999999999999994
No 70
>PRK09230 cytosine deaminase; Provisional
Probab=99.80 E-value=3.4e-17 Score=162.53 Aligned_cols=270 Identities=19% Similarity=0.277 Sum_probs=152.8
Q ss_pred cceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCC---CCC---C--
Q 015110 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRT---E-- 114 (413)
Q Consensus 43 ~~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~---~~~---~-- 114 (413)
..++|+|++++++.. ..+|+|+||+|++|++..... .++.++||++|++|||||||+|+|+... +.. .
T Consensus 4 ~~~li~~~~~~~~~~--~~~i~i~~g~I~~i~~~~~~~--~~~~~~id~~g~~v~PGlid~H~H~~~~~~~~~~~~~~~~ 79 (426)
T PRK09230 4 ALMTIKNARLPGKEG--LWQITIEDGKISAIEPQSEAS--LEAGEVLDAEGGLAIPPFIEPHIHLDTTQTAGEPNWNQSG 79 (426)
T ss_pred ceEEEECcEEcCCCe--eEEEEEECCEEEEecCCCCCC--CCCCceEeCCCCEeccceeEEEEccccceecCCCccCCCC
Confidence 468999999988643 368999999999999864311 1256899999999999999999999764 111 0
Q ss_pred -----------------ccch----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeec----
Q 015110 115 -----------------WEGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG---- 169 (413)
Q Consensus 115 -----------------~e~~----~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 169 (413)
.+++ .....+++++|||+++++.....+.....+.+.+..+..+. ..+++...
T Consensus 80 ~l~~~i~~~~~~~~~~t~ed~~~~a~~~~~e~l~~GvTtvr~~~d~~~~~~~~~~a~~~~~~~~~~--~~~~~i~a~~~~ 157 (426)
T PRK09230 80 TLFEGIERWAERKALLTHEDVKQRAWQTLKWQIANGIQHVRTHVDVSDPTLTALKAMLEVKEEVAP--WVDLQIVAFPQE 157 (426)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEEeccccCCcchhHHHHHHHHHHHhhC--cceEEEEeccCc
Confidence 0111 23456779999999999872111111111222222222222 22333211
Q ss_pred eecCCchhhHHHHHHHHHcCCcEEEEeecCCCCCCCCC---CCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccC
Q 015110 170 GLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPM---TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDD 246 (413)
Q Consensus 170 ~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~---~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~ 246 (413)
++.. .+...+.+++..+.+...+. ..+ ..++ .+.+.+..+++.|+++|+++.+|+.......
T Consensus 158 ~~~~-~~~~~~~l~~a~~~~~~~vg--~~p----~~~~~~~~~~e~l~~~~~~A~~~g~~~~~H~~E~~~~~-------- 222 (426)
T PRK09230 158 GILS-YPNGEALLEEALRLGADVVG--AIP----HFEFTREYGVESLHKAFALAQKYDRLIDVHCDEIDDEQ-------- 222 (426)
T ss_pred cccC-CccHHHHHHHHHHcCCCEEe--CCC----CccccchhHHHHHHHHHHHHHHhCCCcEEEECCCCCcc--------
Confidence 0111 11223445555555543221 111 1111 2478899999999999999999974322100
Q ss_pred cCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCCh-----hhHHHHHHHHHHCCCCEEEEccc
Q 015110 247 TLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCP 321 (413)
Q Consensus 247 ~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~-----~~~~~~i~~ak~~G~~v~~e~~p 321 (413)
...+...+++.++.++ +-++.+.|+... .+.-+.++..+++|+. +.+||
T Consensus 223 -------------------~~~~~~~~~~~~~~gl-----~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~--vv~cP 276 (426)
T PRK09230 223 -------------------SRFVETVAALAHREGM-----GARVTASHTTAMHSYNGAYTSRLFRLLKMSGIN--FVANP 276 (426)
T ss_pred -------------------hHHHHHHHHHHHHhCC-----CCCEEEEecCchhcCCHHHHHHHHHHHHHcCCe--EEECc
Confidence 0112334555554432 456778887654 0134566777777755 45899
Q ss_pred c-ccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEEcCCCC
Q 015110 322 H-YLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS 370 (413)
Q Consensus 322 ~-~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~ 370 (413)
. ++.+.. . ..--|.-++-... .+.++.|+..++|||+.
T Consensus 277 ~sn~~l~~-~-------~~~~p~~~g~~pi---~~l~~aGv~V~lGTD~~ 315 (426)
T PRK09230 277 LVNIHLQG-R-------FDTYPKRRGITRV---KEMLEAGINVCFGHDDV 315 (426)
T ss_pred chhhhhcC-C-------CCCCCCCCCCcCH---HHHHHCCCeEEEecCCC
Confidence 6 233321 0 0001211222233 34455699999999974
No 71
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.80 E-value=4.4e-18 Score=164.37 Aligned_cols=162 Identities=20% Similarity=0.315 Sum_probs=112.1
Q ss_pred EEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchHHHHHHHHhCCceEEEeCCCCCC
Q 015110 62 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSD 141 (413)
Q Consensus 62 ~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~~~~~ 141 (413)
+|+|+||+|++|++....+ .+.++||++|++|+|||||+|+|+..++....+ ...+.++++||||++|++ +..
T Consensus 1 ~i~i~~g~I~~i~~~~~~~---~~~~~id~~g~~v~PG~iD~H~H~~~~g~~~~~---~~~~~a~~~GvTtvvd~~-~~~ 73 (338)
T cd01307 1 DVAIENGKIAAVGAALAAP---AATQIVDAGGCYVSPGWIDLHVHVYQGGTRYGD---RPDMIGVKSGVTTVVDAG-SAG 73 (338)
T ss_pred CEEEECCEEEEccCCCCCC---CCCeEEECCCCEEecCeEEeeecCCCCCcccCC---CHhHHHHcCceeEEEeCC-CCC
Confidence 5899999999999854321 246899999999999999999999988754433 377889999999999998 443
Q ss_pred CCCCcHHHHHHHH-HHHhc--CCeeeEEeeceecCCc-h----hhHHHHHHHH---HcCCcEEEEeecCCCCCCCCCCCH
Q 015110 142 PSTISTETLKLKV-DAAEK--RIYVDVGFWGGLVPEN-A----YNASALEALL---NAGVLGLKSFMCPSGINDFPMTNA 210 (413)
Q Consensus 142 ~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~-~----~~~~~l~~l~---~~G~~~ik~~~~~~~~~~~~~~~~ 210 (413)
+ ...+.+...+ +.... ..++|+++++.+.... + ...+.+.+++ ..|+.++|.+++..+... ...
T Consensus 74 ~--~~~~~~~~~~~~~~~~~v~a~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~e~~~gi~gik~~~~~~~~~~---~~~ 148 (338)
T cd01307 74 A--DNIDGFRYTVIERSATRVYAFLNISRVGLVAQDELPDPDNIDEDAVVAAAREYPDVIVGLKARASKSVVGE---WGI 148 (338)
T ss_pred C--CCHHHHHHHHHHhhhceEEEEEeeeccccccccccCChhHCCHHHHHHHHHHCcCcEEEEEEEeecccccc---cCC
Confidence 3 4445534333 33333 3567777765443211 1 1223344443 468999999887543211 123
Q ss_pred HHHHHHHHHHHhcCCCEEEecCChh
Q 015110 211 SHIKEGLSVLARYKRPLLVHAEMEK 235 (413)
Q Consensus 211 ~~l~~~~~~A~~~g~~v~~H~e~~~ 235 (413)
..++..++.++++|+++.+|+++..
T Consensus 149 ~~l~~~~~~a~~~~~pi~vH~~~~~ 173 (338)
T cd01307 149 KPLELAKKIAKEADLPLMVHIGSPP 173 (338)
T ss_pred cHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 3488899999999999999987654
No 72
>PRK12393 amidohydrolase; Provisional
Probab=99.79 E-value=1.6e-17 Score=166.66 Aligned_cols=184 Identities=20% Similarity=0.228 Sum_probs=106.2
Q ss_pred CcceEEEccE-EEcCCC----ceee-EEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCC---C
Q 015110 42 YNQYWLTSKR-IVTPKG----VISG-AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG---R 112 (413)
Q Consensus 42 ~~~lli~n~~-vi~~~~----~~~~-~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~---~ 112 (413)
|.+++|+|+. |++.+. ..++ +|+|+||+|++|++... .++.++||++|++|+|||||+|+|+.+.. .
T Consensus 1 ~~~~li~~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~----~~~~~viD~~g~~v~PG~VnaH~Hl~~~~~rg~ 76 (457)
T PRK12393 1 MPSLLIRNAAAIMTGLPGDAARLGGPDIRIRDGRIAAIGALTP----LPGERVIDATDCVVYPGWVNTHHHLFQSLLKGV 76 (457)
T ss_pred CCcEEEECCeEEEecCCCccccccCceEEEECCEEEEEeccCC----CCCCeEEeCCCCEEecCEeecccCccccccccc
Confidence 4578999996 676443 2344 89999999999998321 13678999999999999999999997641 1
Q ss_pred C---C-----c--------------cch----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc-CCeeeE
Q 015110 113 T---E-----W--------------EGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-RIYVDV 165 (413)
Q Consensus 113 ~---~-----~--------------e~~----~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 165 (413)
. . | +.+ ..++.+++++||||++|+.....+ ....+......+.... .....+
T Consensus 77 ~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~-~~~~~~~~~~~~a~~~~G~R~~~ 155 (457)
T PRK12393 77 PAGINQSLTAWLAAVPYRFRARFDEDLFRLAARIGLVELLRSGCTTVADHHYLYHP-GMPFDTGDILFDEAEALGMRFVL 155 (457)
T ss_pred ccccCCchHHHhhhCcchhhhhCCHHHHHHHHHHHHHHHHhCCccEeecchhhccc-ccccchHHHHHHHHHHcCCeEEE
Confidence 0 0 0 111 234567799999999998521111 1112222332232221 111111
Q ss_pred E--eec-------ee----cCCc-hhhHHHHHHHHHc---C-Cc-EEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 015110 166 G--FWG-------GL----VPEN-AYNASALEALLNA---G-VL-GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP 226 (413)
Q Consensus 166 ~--~~~-------~~----~~~~-~~~~~~l~~l~~~---G-~~-~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~ 226 (413)
+ ... .. .... .+.++..+++.+. + .. .+.+.+++.. ....++++.++++++.|+++|++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~l~~~~~~a~~~g~~ 233 (457)
T PRK12393 156 CRGGATQTRGDHPGLPTALRPETLDQMLADVERLVSRYHDASPDSLRRVVVAPTT--PTFSLPPELLREVARAARGMGLR 233 (457)
T ss_pred EccccccccccCCCCCCcccccCHHHHHHHHHHHHHHhcCCCcCCceEEEEcCCC--CCCCcCHHHHHHHHHHHHHcCCe
Confidence 1 100 00 0000 1122333444321 1 11 1333344432 11357889999999999999999
Q ss_pred EEEecC
Q 015110 227 LLVHAE 232 (413)
Q Consensus 227 v~~H~e 232 (413)
+++|+.
T Consensus 234 ~~~H~~ 239 (457)
T PRK12393 234 LHSHLS 239 (457)
T ss_pred EEEEeC
Confidence 999973
No 73
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=99.79 E-value=7.7e-18 Score=150.75 Aligned_cols=250 Identities=20% Similarity=0.235 Sum_probs=160.7
Q ss_pred CcceEEEccEEEcCCCce--eeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchH
Q 015110 42 YNQYWLTSKRIVTPKGVI--SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 119 (413)
Q Consensus 42 ~~~lli~n~~vi~~~~~~--~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~ 119 (413)
+.+++++|++++++.... ..+|.|.||||++++.. +.+ .+.++||++|++|.||+||.|+|....+.... .
T Consensus 3 qfdiLLt~~rlidpa~g~d~~tniai~ngkIaa~~d~-~ap---a~tq~Ida~Gc~VspG~iDlHvHvy~ggt~~~---v 75 (386)
T COG3964 3 QFDILLTGGRLIDPARGIDEITNIAIINGKIAAADDY-PAP---AETQIIDADGCIVSPGLIDLHVHVYYGGTEGG---V 75 (386)
T ss_pred ccceeeeCCeecccccccCccceeeeecCeEEeccCc-CCC---hhheEEccCccEeccCeeeeeeEEecCCCccC---c
Confidence 579999999999987643 46899999999999943 222 35789999999999999999999976543211 1
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHh---cCCeeeEEeeceecC-Cch----hhHHHHHHHHHcC--
Q 015110 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE---KRIYVDVGFWGGLVP-ENA----YNASALEALLNAG-- 189 (413)
Q Consensus 120 ~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~----~~~~~l~~l~~~G-- 189 (413)
.....+...||||++|.+ . ....+...+........ -..++++++.+-... +.. -..+++.++++..
T Consensus 76 ~pd~~ga~~GvTTvVDAG-S--aGaanf~gF~r~vie~Sr~RI~Aflnvs~~Gl~a~nE~~d~~nid~d~i~aa~reh~d 152 (386)
T COG3964 76 RPDMYGAPNGVTTVVDAG-S--AGAANFDGFYRTVIEASRVRIKAFLNVSPPGLTASNELYDPDNIDEDKIHAAFREHRD 152 (386)
T ss_pred CHHHccccCCceEEEecC-C--cCccchhhHHHHhhcchhheeeeeeeccCcceeeehhhCChhhCCHHHHHHHHHhCcC
Confidence 234567899999999987 2 22334455554443322 124455544321111 110 1235566666543
Q ss_pred -CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhc-hhhHhhccCcCCccccccCCCCCchHHHHH
Q 015110 190 -VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGS-ERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 267 (413)
Q Consensus 190 -~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~ 267 (413)
..++|+-++....+.+. -.-+....+.|+..++|+++|..++... .+-+.+.. ..+...+..+-+......+..
T Consensus 153 ~ivGlKvR~s~~~~g~~G---itPl~la~~ia~~~klPlmvHigePp~~~dEvlerL~-~GDIitHcfngkpn~~l~~dg 228 (386)
T COG3964 153 VIVGLKVRVSTEDIGEYG---ITPLTLALRIANDLKLPLMVHIGEPPVLMDEVLERLR-RGDIITHCFNGKPNTILTDDG 228 (386)
T ss_pred cEEEEEEEeeeccccccC---CchHHHHHHHHhhcCCceEEecCCCCccHHHHHHhcc-CCceeeeeccCCCCCccccch
Confidence 46888877654332222 2346677888899999999998665543 32222222 334444433333333345555
Q ss_pred HHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCC
Q 015110 268 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGD 313 (413)
Q Consensus 268 ~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~ 313 (413)
.+....+.|++- |+++.+.|.... -+++..+.+-.+|+
T Consensus 229 ~vr~~vrra~er-------GV~fD~ghG~as-fsf~vAr~aia~Gl 266 (386)
T COG3964 229 VVRAEVRRARER-------GVIFDAGHGRAS-FSFNVARRAIANGL 266 (386)
T ss_pred hHHHHHHHHHhc-------ceEEEccCCcce-eeHHHHHHHHhcCC
Confidence 677777777653 999999999876 77888889888886
No 74
>PRK09356 imidazolonepropionase; Validated
Probab=99.79 E-value=1.6e-17 Score=164.65 Aligned_cols=183 Identities=24% Similarity=0.318 Sum_probs=106.4
Q ss_pred CcceEEEccEEEcCCC-------c-eeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCC
Q 015110 42 YNQYWLTSKRIVTPKG-------V-ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT 113 (413)
Q Consensus 42 ~~~lli~n~~vi~~~~-------~-~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~ 113 (413)
|++++|+|++|+++++ . .+++|+|+||||++|++..+.+. ..+.++||++|++|||||||+|+|+......
T Consensus 2 ~~~~li~~~~v~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~-~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~ 80 (406)
T PRK09356 2 MADLLWTNAQLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEADLPA-AYAAEVIDAGGKLVTPGLIDCHTHLVFGGNR 80 (406)
T ss_pred CceEEEECCEEEecCCCCccccccccCcEEEEECCEEEEEeCcccccc-ccCceEEECCCCEEeeceEecCCCcccCCCc
Confidence 4689999999998753 2 37899999999999998643321 1235899999999999999999999754211
Q ss_pred C-----------c----------------------cch----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHH
Q 015110 114 E-----------W----------------------EGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 156 (413)
Q Consensus 114 ~-----------~----------------------e~~----~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~ 156 (413)
. + +++ ......++++||||+.++.....+.....+.++... .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~-~ 159 (406)
T PRK09356 81 ANEFELRLQGVSYEEIAAQGGGILSTVRATRAASEEELFAQALPRLDALLAEGVTTVEIKSGYGLDLETELKMLRVAR-R 159 (406)
T ss_pred HHHHHHHHCCCcHHHHHHhcCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCHHHHHHHHHHHH-H
Confidence 0 0 011 123346689999999986411111101111222222 2
Q ss_pred HhcCCeeeEE--eec--eecC---Cc-hhhHHHH-HHHH----H-cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh
Q 015110 157 AEKRIYVDVG--FWG--GLVP---EN-AYNASAL-EALL----N-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR 222 (413)
Q Consensus 157 ~~~~~~~~~~--~~~--~~~~---~~-~~~~~~l-~~l~----~-~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~ 222 (413)
...+..+.+. +.. +... .. ....+.+ ++++ . .++..++.+... ..++.++++++++.|++
T Consensus 160 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~l~~~~~~A~~ 233 (406)
T PRK09356 160 LGEEHPVDVVTTFLGAHAVPPEYKGRPDAYIDLVCEEMLPAVAEEGLADAVDVFCET------GAFSVEQSERVLEAAKA 233 (406)
T ss_pred HhhhCCCceEeeeeecccCCccccCCHHHHHHHHHHHHhHHHHhcCCcceEEEEecC------CCCCHHHHHHHHHHHHH
Confidence 1111111111 110 0000 01 1111111 1121 1 245566554221 24678999999999999
Q ss_pred cCCCEEEecC
Q 015110 223 YKRPLLVHAE 232 (413)
Q Consensus 223 ~g~~v~~H~e 232 (413)
+|+++.+|+.
T Consensus 234 ~g~~v~~H~~ 243 (406)
T PRK09356 234 LGLPVKIHAE 243 (406)
T ss_pred CCCCEEEEEe
Confidence 9999999984
No 75
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=99.78 E-value=1.3e-17 Score=165.91 Aligned_cols=180 Identities=16% Similarity=0.167 Sum_probs=107.3
Q ss_pred cceEEEccEEEcCCCc--eeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCC---C----
Q 015110 43 NQYWLTSKRIVTPKGV--ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR---T---- 113 (413)
Q Consensus 43 ~~lli~n~~vi~~~~~--~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~---~---- 113 (413)
++++|+|++|++++.. .+++|+|+||+|++|++.... ++.++||+.|++|+|||||+|+|+.+... .
T Consensus 1 ~~~~i~~~~i~~~~~~~~~~~~i~i~~g~I~~v~~~~~~----~~~~~id~~~~~v~Pg~vd~H~H~~~~~~rg~~~~~~ 76 (424)
T PRK08393 1 MSILIKNGYVIYGENLKVIRADVLIEGNKIVEVKRNINK----PADTVIDASGSVVSPGFINAHTHSPMVLLRGLADDVP 76 (424)
T ss_pred CeEEEECcEEEeCCCCceecceEEEECCEEEEecCCCCC----CCCeEEeCCCCEEccCeeeeccCcchHhhhhccCCCC
Confidence 3689999999998773 468999999999999875322 24579999999999999999999865311 0
Q ss_pred ----------------Cccch----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecC
Q 015110 114 ----------------EWEGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP 173 (413)
Q Consensus 114 ----------------~~e~~----~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (413)
..+++ ..+..+++++||||++|+.. ..+.+.+......-+..+.++......+
T Consensus 77 l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~~-------~~~~~~~a~~~~G~r~~~~~~~~~~~~~ 149 (424)
T PRK08393 77 LMEWLQNYIWPRERKLKRKDIYWGAYLGLLEMIKSGTTTFVDMYF-------HMEEVAKATLEVGLRGYLSYGMVDLGDE 149 (424)
T ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCceEEecccc-------CHHHHHHHHHHhCCeEEEeceEecCCCc
Confidence 00122 23456778999999998851 1122222221111122222221110011
Q ss_pred Cc-hhhHHHHHHHHH----cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec-CChhh
Q 015110 174 EN-AYNASALEALLN----AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA-EMEKG 236 (413)
Q Consensus 174 ~~-~~~~~~l~~l~~----~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~ 236 (413)
.. .+.+++..++++ .+...+...++++. ...+++++++++++.|+++|+++++|+ |....
T Consensus 150 ~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~---~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~~ 215 (424)
T PRK08393 150 EKREKEIKETEKLMEFIEKLNSPRVHFVFGPHA---PYTCSLALLKWVREKAREWNKLITIHLSETMDE 215 (424)
T ss_pred cchHHHHHHHHHHHHHHhcCCCCceEEEEeCCc---CCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHH
Confidence 11 111222222222 12222333333321 124789999999999999999999997 44433
No 76
>PRK07213 chlorohydrolase; Provisional
Probab=99.78 E-value=1.8e-17 Score=162.22 Aligned_cols=169 Identities=20% Similarity=0.230 Sum_probs=102.0
Q ss_pred eEEEccEEEcCCC--ceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCC---------
Q 015110 45 YWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT--------- 113 (413)
Q Consensus 45 lli~n~~vi~~~~--~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~--------- 113 (413)
++|+|++++++.. ..+++|+|+||+|++|++.. ++.++||++|++| |||||+|+|+.+....
T Consensus 2 ~li~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~------~~~~~id~~g~~v-PGlvd~H~H~~~~~~rg~~~~~~l~ 74 (375)
T PRK07213 2 LVYLNGNFLYGEDFEPKKGNLVIEDGIIKGFTNEV------HEGNVIDAKGLVI-PPLINAHTHIGDSSIKDIGIGKSLD 74 (375)
T ss_pred EEEEeeEEEeCCCCceeeeEEEEECCEEEEeccCC------CCCeEEeCCCCEe-cceeeeccccCchhhhcCCCCCCHH
Confidence 6799999999765 35788999999999998641 2457999999999 9999999999764110
Q ss_pred C-----------------ccch----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeecee-
Q 015110 114 E-----------------WEGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL- 171 (413)
Q Consensus 114 ~-----------------~e~~----~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 171 (413)
. .+++ ...+.+++++||||++|+. .. . ...+....+.... ..+...+....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~-~~--~---~~~~~~~~~a~~~-~~~r~~~~~~~~ 147 (375)
T PRK07213 75 ELVKPPNGLKHKFLNSCSDKELVEGMKEGLYDMYNNGIKAFCDFR-EG--G---IKGINLLKKASSD-LPIKPIILGRPT 147 (375)
T ss_pred HHccCCCcchHHHHhcCCHHHHHHHHHHHHHHHHHcCCeEEEEhh-hc--C---hhHHHHHHHHHHc-CCCceEEecCCC
Confidence 0 0111 2345667999999999974 11 1 1122222222221 11111111100
Q ss_pred cCCchhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec-CChh
Q 015110 172 VPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA-EMEK 235 (413)
Q Consensus 172 ~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~ 235 (413)
........+.+++.++. ..++ ... ....++.++++++++.|+++|+++++|+ |...
T Consensus 148 ~~~~~~~~~~~~~~~~~-~~g~----~~~---~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~ 204 (375)
T PRK07213 148 EADENELKKEIREILKN-SDGI----GLS---GANEYSDEELKFICKECKREKKIFSIHAAEHKG 204 (375)
T ss_pred cccchhhHHHHHHHHHh-cccc----ccc---ccccCCHHHHHHHHHHHHHcCCEEEEeeCCchh
Confidence 00111222334433331 1222 111 1234688999999999999999999997 4443
No 77
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=99.78 E-value=4.6e-17 Score=161.07 Aligned_cols=257 Identities=18% Similarity=0.166 Sum_probs=138.4
Q ss_pred eeeEEEEECCEEEEcccCCCCCCC-CCCCcEEecCCCEEeeeeeecccccCCCCCC--------C---------------
Q 015110 59 ISGAVEIKEGNIISIVSEEDWPRN-SKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT--------E--------------- 114 (413)
Q Consensus 59 ~~~~V~I~dG~I~~Ig~~~~~~~~-~~~~~vID~~G~~vlPGlID~H~H~~~~~~~--------~--------------- 114 (413)
.+++|+|+||||++||+..+.... +++.++||++|++|||||||+|+|+...... .
T Consensus 5 ~~~~V~V~~g~I~~Vg~~~~~~~~~~~~~~viD~~g~~v~PGlId~H~Hl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (401)
T TIGR02967 5 EDGLLVVENGRIVAVGDYAELKETLPAGVEIDDYRGHLIMPGFIDTHIHYPQTEMIASYGEQLLEWLEKYTFPTEARFAD 84 (401)
T ss_pred eceEEEEECCEEEEecCcchhhhccCCCCeEEeCCCCEEecceeecccCchhhhhcccCCchHHHHHhhCcCccccccCC
Confidence 368999999999999986432111 1256899999999999999999998643110 0
Q ss_pred ccch----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecC-----CchhhHHHHHHH
Q 015110 115 WEGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP-----ENAYNASALEAL 185 (413)
Q Consensus 115 ~e~~----~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~l 185 (413)
.+.. .....+++++||||++|+. ...+. ....+.+..+....+............+ ...+.++..+++
T Consensus 85 ~~~~~~~a~~~~~e~l~~GvTtv~d~~-~~~~~--~~~~~~~a~~~~G~R~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 161 (401)
T TIGR02967 85 PDHAEEVAEFFLDELLRNGTTTALVFA-TVHPE--SVDALFEAALKRGMRMIAGKVLMDRNAPDYLRDTAESSYDESKAL 161 (401)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecc-ccCHH--HHHHHHHHHHHCCCeEEEeeeeecCCCCcccccCHHHHHHHHHHH
Confidence 0011 1224578999999999986 22211 1111211111111111111111100001 111223344444
Q ss_pred HH--cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-CCCEEEec-CChhhchhhHhhccCcCCccccccCCCCCc
Q 015110 186 LN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-KRPLLVHA-EMEKGSERHVKLEDDTLDTRSYSTYLKTRP 261 (413)
Q Consensus 186 ~~--~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 261 (413)
++ .+...++..+.+.. .+.+++++++++++.|+++ |+++++|+ |+........... ..+|
T Consensus 162 i~~~~~~g~i~~~~~~~~---~~~~s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~-------------~~~~ 225 (401)
T TIGR02967 162 IERWHGKGRLLYAVTPRF---APTSSPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELF-------------PEAK 225 (401)
T ss_pred HHHHhCcCCceEEEECCc---CCcCcHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHc-------------CCCC
Confidence 43 22223555555532 2357889999999999999 99999997 4544332222111 1111
Q ss_pred hHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEcccccc-ccccccCCCCCcceEE
Q 015110 262 PSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYL-AFSAEEIPDGDTRFKC 340 (413)
Q Consensus 262 ~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l-~l~~~~~~~~~~~~k~ 340 (413)
. .++..++.|+ .|.++.+.|+... . -+.++.+++.|+.| .+||..- .+. .+
T Consensus 226 ~---------~~~~l~~~g~----lg~~~~~~H~~~~-~-~~~~~~l~~~g~~v--~~~P~~~~~~~------~g----- 277 (401)
T TIGR02967 226 D---------YLDVYDHYGL----LGRRSVFAHCIHL-S-DEECQRLAETGAAI--AHCPTSNLFLG------SG----- 277 (401)
T ss_pred c---------HHHHHHHCCC----CCCCeEEEecccC-C-HHHHHHHHHcCCeE--EEChHHHHHhc------cC-----
Confidence 1 1222223322 3556777777654 1 12455666677654 4788521 111 01
Q ss_pred cCCCCChhcHHHHHHHHhcCCccEEcCCCCC
Q 015110 341 APPIRDAANKEKLWEALMDGHIDMLSSDHSP 371 (413)
Q Consensus 341 ~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p 371 (413)
.+| +.+.++.|...++|||...
T Consensus 278 ~~~---------~~~~~~~Gv~v~lGtD~~~ 299 (401)
T TIGR02967 278 LFN---------LKKALEHGVRVGLGTDVGG 299 (401)
T ss_pred CCC---------HHHHHHCCCeEEEecCCCC
Confidence 233 2334566999999999743
No 78
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.77 E-value=4.8e-18 Score=164.57 Aligned_cols=142 Identities=22% Similarity=0.167 Sum_probs=92.2
Q ss_pred cEEecCCCEEeeeeeecccccCCCCCCCc------c-----chHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHH
Q 015110 87 QVVDYGEAVIMPGLIDVHAHLDDPGRTEW------E-----GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD 155 (413)
Q Consensus 87 ~vID~~G~~vlPGlID~H~H~~~~~~~~~------e-----~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~ 155 (413)
++||++|++|||||||+|+|+........ + ......+.++++||||++|++ +..+. . ++..+.
T Consensus 2 ~vID~~g~~v~PGliD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~g-~~~~~----~-~~~~~~ 75 (342)
T cd01299 2 QVIDLGGKTLMPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRDAG-GADYG----L-LRDAID 75 (342)
T ss_pred cEEeCCCCEECCCeeeeeeeccccCCCccccccCCHHHHHHHHHHHHHHHHhCCCcEEEeCC-CcchH----H-HHHHHH
Confidence 68999999999999999999866422111 1 112467889999999999997 32111 1 222221
Q ss_pred HHh---------------cCCeeeEEe---------eceecCCchhhHHHHHHHHHcCCcEEEEeecCCCCC-----CCC
Q 015110 156 AAE---------------KRIYVDVGF---------WGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN-----DFP 206 (413)
Q Consensus 156 ~~~---------------~~~~~~~~~---------~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~-----~~~ 206 (413)
... ...+.++.+ +........+.++.++++++.|+..+|+|+.+.... ..+
T Consensus 76 ~g~~~gPr~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~ 155 (342)
T cd01299 76 AGLIPGPRVFASGRALSQTGGHGDPRGLSGLFPAGGLAAVVDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDT 155 (342)
T ss_pred cCCccCCceeecchhhcccCCCCccccccccccccCCcceecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCccc
Confidence 111 001111110 111122234457788889999999999998642111 112
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEecCCh
Q 015110 207 MTNASHIKEGLSVLARYKRPLLVHAEME 234 (413)
Q Consensus 207 ~~~~~~l~~~~~~A~~~g~~v~~H~e~~ 234 (413)
.++.++++++++.|+++|+++.+|+.+.
T Consensus 156 ~~~~e~l~~~~~~A~~~g~~v~~H~~~~ 183 (342)
T cd01299 156 QFSEEELRAIVDEAHKAGLYVAAHAYGA 183 (342)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 5789999999999999999999999653
No 79
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=99.77 E-value=6.6e-17 Score=161.13 Aligned_cols=178 Identities=18% Similarity=0.223 Sum_probs=106.5
Q ss_pred CcceEEEccEEEcCCC--ceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCC---CC----
Q 015110 42 YNQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GR---- 112 (413)
Q Consensus 42 ~~~lli~n~~vi~~~~--~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~---~~---- 112 (413)
|.+++|+|++|+++++ ..+++|+|+||+|++|++.... ++.++||++|++|+|||||+|+|+... +.
T Consensus 1 ~~~~~~~~~~i~~~~~~~~~~~~v~v~~g~I~~i~~~~~~----~~~~~id~~g~~v~PG~vd~H~H~~~~~~~g~~~~~ 76 (430)
T PRK06038 1 MADIIIKNAYVLTMDAGDLKKGSVVIEDGTITEVSESTPG----DADTVIDAKGSVVMPGLVNTHTHAAMTLFRGYADDL 76 (430)
T ss_pred CCCEEEEccEEEECCCCeeeccEEEEECCEEEEecCCCCC----CCCEEEeCCCCEEecCeeecccCcchhhhhhccCCC
Confidence 3478999999997654 3468999999999999985322 245799999999999999999999753 11
Q ss_pred C----------------Cccch----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceec
Q 015110 113 T----------------EWEGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV 172 (413)
Q Consensus 113 ~----------------~~e~~----~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (413)
. ..++. .....+++++||||++|+.. . .....+. .+...-+....++.. ...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~--~----~~~~~~a-~~~~GiR~~~~~~~~-d~~ 148 (430)
T PRK06038 77 PLAEWLNDHIWPAEAKLTAEDVYAGSLLACLEMIKSGTTSFADMYF--Y----MDEVAKA-VEESGLRAALSYGMI-DLG 148 (430)
T ss_pred CHHHHHHhhhhhchhcCCHHHHHHHHHHHHHHHHhcCceeEEcccc--C----HHHHHHH-HHHhCCeEEEEchhc-cCC
Confidence 0 00111 12355679999999998851 1 1111111 111111111111100 000
Q ss_pred C-C-chhhHHHHHHHHHc--C--CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCCh
Q 015110 173 P-E-NAYNASALEALLNA--G--VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME 234 (413)
Q Consensus 173 ~-~-~~~~~~~l~~l~~~--G--~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~ 234 (413)
. . ..+.+++..++++. + ...++..+.+.. ...+++++++++++.|+++|+++++|+...
T Consensus 149 ~~~~~~~~l~~~~~~i~~~~~~~~g~v~~~~~~~~---~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~ 213 (430)
T PRK06038 149 DDEKGEAELKEGKRFVKEWHGAADGRIKVMYGPHA---PYTCSEEFLSKVKKLANKDGVGIHIHVLET 213 (430)
T ss_pred CccchHHHHHHHHHHHHHhcCCCCCceEEEEeCCc---CccCCHHHHHHHHHHHHHcCCcEEEEcCCC
Confidence 0 0 11122333333321 1 112444444432 235789999999999999999999998443
No 80
>KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism]
Probab=99.77 E-value=2e-17 Score=143.39 Aligned_cols=263 Identities=19% Similarity=0.256 Sum_probs=181.5
Q ss_pred EeeeeeecccccCCCCCCCccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc-CCeeeEEeeceecCC
Q 015110 96 IMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-RIYVDVGFWGGLVPE 174 (413)
Q Consensus 96 vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 174 (413)
-+|+.-|+|+|++++..- ....-....+||.....|| |..|+..+.+..-.+.+.... .+-.. |.+++.-.
T Consensus 6 ~i~~~~DmHvHlR~g~ml-----~aVvP~~a~ggvs~AyvMP-NL~PPiTt~da~i~YkK~i~kL~sktt--fLMslYLs 77 (344)
T KOG2902|consen 6 TITQPDDMHVHLRDGDML-----HAVVPHSASGGVSRAYVMP-NLKPPITTTDAAIIYKKFIMKLPSKTT--FLMSLYLS 77 (344)
T ss_pred ecCCccceeEEeccCCee-----eeeccccccCceeEEEEcC-CCCCCcchHHHHHHHHHHHHhcCccce--eEEEEeec
Confidence 468899999999975321 1112233578899999999 888887766555555444332 11111 22222222
Q ss_pred chhhHHHHHHHHHcC-CcEEEEeecCCCCCC-CCCC-CHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCcc
Q 015110 175 NAYNASALEALLNAG-VLGLKSFMCPSGIND-FPMT-NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR 251 (413)
Q Consensus 175 ~~~~~~~l~~l~~~G-~~~ik~~~~~~~~~~-~~~~-~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~ 251 (413)
.....+++++..+.| +.++|.|........ .... .-+.+.-++++..+.|+++.+|-|-+...+..+-
T Consensus 78 ~~ttPe~I~eAa~~~~irgVK~YPaGaTTNS~~GV~~~f~~fyPvf~aMqe~nm~LnvHGEvpps~D~~Vf--------- 148 (344)
T KOG2902|consen 78 DKTTPEEIREAAESGVIRGVKLYPAGATTNSQDGVTDLFGKFYPVFEAMQEQNMPLNVHGEVPPSIDGHVF--------- 148 (344)
T ss_pred CCCCHHHHHHHHHhCceeeEEeccCcccccccccccccchhhhHHHHHHHHcCceEEecCCCCCccCCcee---------
Confidence 333467888888874 568898854321111 1111 2456888999999999999999987654321110
Q ss_pred ccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccC
Q 015110 252 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 331 (413)
Q Consensus 252 ~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~ 331 (413)
.+|...+..++++-++ +++.++.+.|+++. ++++.++.|+ +..|.+++++|||+|+.+++
T Consensus 149 -----------~aE~~Flptll~Lhqr------fP~LKivlEHcTt~-dAv~~ve~a~--~~sVaaTvTahHL~Lt~~dw 208 (344)
T KOG2902|consen 149 -----------DAEKIFLPTLLQLHQR------FPQLKIVLEHCTTM-DAVNFVESAK--EGSVAATVTAHHLLLTRNDW 208 (344)
T ss_pred -----------cchhhhHHHHHHHHHh------CccceeHHHhcccH-HHHHHHHhhc--CCceeeEeehheeEEehhhh
Confidence 1355667777777776 46999999999999 8999999875 44788889999999999886
Q ss_pred CCCCcceEEcCCCCChhcHHHHHHHHhcCCcc-EEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHH
Q 015110 332 PDGDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLF 401 (413)
Q Consensus 332 ~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~-~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~ 401 (413)
. +++...|.|-.+.+.||++|.++.-+|..- ++|||.+||..+.|+.. . .-.|+-+....++.+
T Consensus 209 q-g~P~nfCkPVaK~e~dr~AlvkAatSg~pkFFfGsDSAPHprs~K~~~----~-~cAGvysqpfA~sy~ 273 (344)
T KOG2902|consen 209 Q-GQPHNFCKPVAKREIDREALVKAATSGSPKFFFGSDSAPHPRSRKESS----C-GCAGVYSQPFALSYY 273 (344)
T ss_pred c-CCCcccccccccCcccHHHHHHHHhcCCCceeecCCCCCCcccccccC----C-CcceeecccchHHHH
Confidence 4 367778899899999999999999999865 79999999998888532 1 224555555555554
No 81
>PRK09228 guanine deaminase; Provisional
Probab=99.76 E-value=9.6e-17 Score=159.85 Aligned_cols=254 Identities=17% Similarity=0.152 Sum_probs=135.6
Q ss_pred eeeEEEEECCEEEEcccCCCCCCCCC-CCcEEecCCCEEeeeeeecccccCCCCCCC-----------------------
Q 015110 59 ISGAVEIKEGNIISIVSEEDWPRNSK-TGQVVDYGEAVIMPGLIDVHAHLDDPGRTE----------------------- 114 (413)
Q Consensus 59 ~~~~V~I~dG~I~~Ig~~~~~~~~~~-~~~vID~~G~~vlPGlID~H~H~~~~~~~~----------------------- 114 (413)
.+++|+|+||+|++||+..+.....+ +.++||++|++|+|||||+|+|+.+.....
T Consensus 30 ~~g~I~I~~g~I~~Vg~~~~~~~~~~~~~~viD~~g~lv~PGlVn~H~H~~~~~~~g~~~~~l~~wl~~~~~~~e~~~~~ 109 (433)
T PRK09228 30 EDGLLLVEDGRIVAAGPYAELRAQLPADAEVTDYRGKLILPGFIDTHIHYPQTDMIASYGEQLLDWLNTYTFPEERRFAD 109 (433)
T ss_pred CCeEEEEECCEEEEEcChHHhhhhcCCCCeEEeCCCCEEecceecccccccchhhccCCchHHHHHHHhhhhHHHHHhCC
Confidence 37899999999999998543211112 358999999999999999999986541110
Q ss_pred ccchH----HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc---CCeeeEEeeceecC-----CchhhHHHH
Q 015110 115 WEGFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK---RIYVDVGFWGGLVP-----ENAYNASAL 182 (413)
Q Consensus 115 ~e~~~----~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~l 182 (413)
.+..+ .+..+++++||||++|+. ...+ ...+...+.... +..+.+.+.....+ ...+.++..
T Consensus 110 ~~~~~~~a~~~~~e~l~~G~Ttv~d~~-~~~~-----~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (433)
T PRK09228 110 PAYAREVAEFFLDELLRNGTTTALVFG-TVHP-----QSVDALFEAAEARNMRMIAGKVLMDRNAPDGLRDTAESGYDDS 183 (433)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEEecc-ccCH-----HHHHHHHHHHHHcCCeEEeeeeeecCCCCcccccCHHHHHHHH
Confidence 01111 124567999999999875 2211 122222222221 12221221110001 111122233
Q ss_pred HHHHHc--CCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-CCCEEEec-CChhhchhhHhhccCcCCccccccCCC
Q 015110 183 EALLNA--GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-KRPLLVHA-EMEKGSERHVKLEDDTLDTRSYSTYLK 258 (413)
Q Consensus 183 ~~l~~~--G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~-e~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (413)
.++++. +...++..+++.. .+.++++.++++.+.|+++ |+++++|. |+..+........+
T Consensus 184 ~~~~~~~~~~~~~~~~~~p~~---~~t~s~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~~~g------------- 247 (433)
T PRK09228 184 KALIERWHGKGRLLYAITPRF---APTSTPEQLEAAGALAREHPDVWIQTHLSENLDEIAWVKELFP------------- 247 (433)
T ss_pred HHHHHHHhCCCCceEEEECCc---CCcCCHHHHHHHHHHHHHCCCCceEEeecCChhHHHHHHHHcC-------------
Confidence 333321 2123444444432 2357899999999999998 99999996 55544321111110
Q ss_pred CCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcce
Q 015110 259 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRF 338 (413)
Q Consensus 259 ~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~ 338 (413)
.+|. .++..++.|+ .+-++.+.|+... . -+.++..++.|+ .+.+||..-.. + ..+
T Consensus 248 ~~~~---------~~~~l~~~G~----l~~~~~~~H~~~l-~-~~~~~~la~~g~--~v~~~P~sn~~----l-g~g--- 302 (433)
T PRK09228 248 EARD---------YLDVYERYGL----LGPRAVFAHCIHL-E-DRERRRLAETGA--AIAFCPTSNLF----L-GSG--- 302 (433)
T ss_pred CCCC---------HHHHHHHcCC----CCCCeEEEeccCC-C-HHHHHHHHHcCC--eEEECCccHHh----h-cCC---
Confidence 1110 1222333322 2556778887754 1 123444555565 44578852110 0 001
Q ss_pred EEcCCCCChhcHHHHHHHHhcCCccEEcCCCC
Q 015110 339 KCAPPIRDAANKEKLWEALMDGHIDMLSSDHS 370 (413)
Q Consensus 339 k~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~ 370 (413)
.+| +.+.++.|...++|||..
T Consensus 303 --~~~---------~~~~~~~Gv~v~lGtD~~ 323 (433)
T PRK09228 303 --LFD---------LKRADAAGVRVGLGTDVG 323 (433)
T ss_pred --CcC---------HHHHHHCCCeEEEecCCC
Confidence 222 344566699999999974
No 82
>PRK06846 putative deaminase; Validated
Probab=99.75 E-value=8.1e-16 Score=152.43 Aligned_cols=263 Identities=17% Similarity=0.223 Sum_probs=152.0
Q ss_pred ceEEEccEEEcCCC----------ceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCC
Q 015110 44 QYWLTSKRIVTPKG----------VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT 113 (413)
Q Consensus 44 ~lli~n~~vi~~~~----------~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~ 113 (413)
...|+|+++..+.. ....+|.|+||+|++|++....+. .+.++||++|++|+|||||+|+|+..+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~g~I~~i~~~~~~~~--~~~~~id~~g~~v~Pg~iD~H~H~~~~~~~ 82 (410)
T PRK06846 5 HYWLTNVRLETGFDYENGVIVQTETALCTLEIQDGKIVAIRPNKQVPD--ATLPTYDANGLLMLPAFREMHIHLDKTYYG 82 (410)
T ss_pred ceEEEeeecCccccccCceecCCceeeEEEEEECCEEEEeecCCCCCC--CCCceEeCCCCEEecCEEeeeecccchhhc
Confidence 45566766543321 236799999999999997532211 245789999999999999999999764211
Q ss_pred -Cc------------------------cch----HHHHHHHHhCCceEEEeCCCCCCCCC--CcHHHHHHHHHHHhcCCe
Q 015110 114 -EW------------------------EGF----PSGTKAAAAGGITTLIDMPLNSDPST--ISTETLKLKVDAAEKRIY 162 (413)
Q Consensus 114 -~~------------------------e~~----~~~~~~al~~GvTTv~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 162 (413)
.. +.. .......++.|+|+++++. +..+.. ...+.+.+.++.......
T Consensus 83 ~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~~~Gtt~~r~~v-~~~~~~~~~~~~a~~e~l~e~~~~v~ 161 (410)
T PRK06846 83 GPWKACRPAKTIQDRIELEQKELPELLPTTQERAEKLIELLQSKGATHIRSHC-NIDPVIGLKNLENLQAALERYKDGFT 161 (410)
T ss_pred cchhhcCCcccHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHhCCccEEEEEE-eeCcccccchHHHHHHHHHHhhCcce
Confidence 00 000 1223445678999998886 333321 112222222222222211
Q ss_pred eeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHh
Q 015110 163 VDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVK 242 (413)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~ 242 (413)
..+..+...........+.+++.++.|+..++.. .+. .....+.+++.++++.|+++|+++.+|.......
T Consensus 162 ~~~~a~~~~g~~~~~~~~lL~~al~~Ga~~i~gl-~p~---~~~~~~~~~l~~~~~lA~~~g~~v~~Hv~e~~~~----- 232 (410)
T PRK06846 162 YEIVAFPQHGLLRSNSEPLMREAMKMGAHLVGGV-DPA---SVDGAIEKSLDTMFQIAVDFNKGVDIHLHDTGPL----- 232 (410)
T ss_pred EEEEeccCcccCCccHHHHHHHHHHcCCCEEeCC-CCc---cCCcCHHHHHHHHHHHHHHhCCCcEEEECCCCCh-----
Confidence 1111111000001223467888888998865532 221 1124677899999999999999999997532210
Q ss_pred hccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCC-----hhhHHHHHHHHHHCCCCEEE
Q 015110 243 LEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD-----ASSSLDLLMEAKTNGDSITV 317 (413)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~-----~~~~~~~i~~ak~~G~~v~~ 317 (413)
....+++++++.++.++ .+ ++++.|+.. .++.-++++..++.|+.|+.
T Consensus 233 ----------------------~~~~~~~~~~~~~~~gl----~~-~v~~~H~~~l~~~~~~e~~~li~~la~~g~~v~~ 285 (410)
T PRK06846 233 ----------------------GVATIKYLVETTEEAQW----KG-KVTISHAFALGDLNEEEVEELAERLAAQGISITS 285 (410)
T ss_pred ----------------------hHHHHHHHHHHHHHhCC----CC-CEEEEecchhhcCCHHHHHHHHHHHHHcCCeEEE
Confidence 01234455666665432 23 799999863 22334456778888887763
Q ss_pred EccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEEcCCCC
Q 015110 318 ETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS 370 (413)
Q Consensus 318 e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~ 370 (413)
. +| + ..+ .|| +.+.++.|....+|||..
T Consensus 286 ~-~~--~--------~~g-----~~p---------~~~l~~~Gv~v~lGtD~~ 313 (410)
T PRK06846 286 T-VP--I--------GRL-----HMP---------IPLLHDKGVKVSLGTDSV 313 (410)
T ss_pred e-CC--C--------CCC-----CCC---------HHHHHhCCCeEEEecCCC
Confidence 1 11 0 001 233 334455699999999973
No 83
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.75 E-value=9.4e-18 Score=163.75 Aligned_cols=65 Identities=34% Similarity=0.498 Sum_probs=53.3
Q ss_pred cceEEEccEEEcCCC-ceeeEEEEECCEEEEcccCC-CCCCCCCCCcEEecCCCEEeeeeeecccccCCC
Q 015110 43 NQYWLTSKRIVTPKG-VISGAVEIKEGNIISIVSEE-DWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110 (413)
Q Consensus 43 ~~lli~n~~vi~~~~-~~~~~V~I~dG~I~~Ig~~~-~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~ 110 (413)
..+.+.+++.++.-+ +.++.|+|+||||++|++.. ..+ ++.++||++|++|+|||||+|+|+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~i~~~~v~i~~GkI~~vg~~~~~~~---~~~~viD~~G~~V~PGLID~HtHl~~~ 76 (406)
T COG1228 10 AMLATLAGRGLPGLGIIEDGAVLIEDGKIVAVGPEEIDIP---AGAEVIDAKGKTVTPGLIDAHTHLGFG 76 (406)
T ss_pred hhheeeccccCCCcceeecceEEEECCEEEEecCcccCCC---CCCeEEeCCCCEEccceeecccccccc
Confidence 356788888887544 45799999999999999873 332 467999999999999999999999764
No 84
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=99.74 E-value=1.5e-16 Score=158.44 Aligned_cols=254 Identities=19% Similarity=0.155 Sum_probs=136.4
Q ss_pred eeeEEEEECCEEEEcccCCCCC-CCCCCCcEEecCCCEEeeeeeecccccCCCC---C-C-----Cc-------------
Q 015110 59 ISGAVEIKEGNIISIVSEEDWP-RNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG---R-T-----EW------------- 115 (413)
Q Consensus 59 ~~~~V~I~dG~I~~Ig~~~~~~-~~~~~~~vID~~G~~vlPGlID~H~H~~~~~---~-~-----~~------------- 115 (413)
.+++|+|+||+|++||+..+.. ..+++.++||++|++|||||||+|+|+.+.. . . .|
T Consensus 25 ~~g~V~v~~g~I~~vG~~~~~~~~~~~~~~viD~~g~~v~PGlVn~H~Hl~~~~~rg~~~~~~l~~wl~~~~~~~e~~~~ 104 (429)
T cd01303 25 EDGLIVVVDGNIIAAGAAETLKRAAKPGARVIDSPNQFILPGFIDTHIHAPQYANIGSGLGEPLLDWLETYTFPEEAKFA 104 (429)
T ss_pred CCeEEEEECCEEEEeCchhhhhhhcCCCceEEcCCCCEEecceeeeeecccccccccccCCCcHHHHHHhhhhHHHHhcC
Confidence 4789999999999999854321 1123568999999999999999999986531 1 0 00
Q ss_pred --cch----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc---CCeeeEEeeceecCC-----chhhHHH
Q 015110 116 --EGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK---RIYVDVGFWGGLVPE-----NAYNASA 181 (413)
Q Consensus 116 --e~~----~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~ 181 (413)
+.. .....+++++||||++++. ... ........+.... +..+.+.......+. ..+.++.
T Consensus 105 ~~~~~~~~a~~~~~e~l~~GvTtv~d~~-~~~-----~~~~~~~~~a~~~~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (429)
T cd01303 105 DPAYAREVYGRFLDELLRNGTTTACYFA-TIH-----PESTEALFEEAAKRGQRAIAGKVCMDRNAPEYYRDTAESSYRD 178 (429)
T ss_pred CHHHHHHHHHHHHHHHHhCCceEEEeec-ccC-----hhHHHHHHHHHHHhCCeEEEeeeeecCCCCcccccCHHHHHHH
Confidence 011 1234567999999999886 211 1122222222221 122211111100011 1111222
Q ss_pred HHHHHH--cCC-cEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcC-CCEEEec-CChhhchhhHhhccCcCCccccccC
Q 015110 182 LEALLN--AGV-LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYK-RPLLVHA-EMEKGSERHVKLEDDTLDTRSYSTY 256 (413)
Q Consensus 182 l~~l~~--~G~-~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g-~~v~~H~-e~~~~~~~~~~~~~~~~~~~~~~~~ 256 (413)
..++++ .+. ..+...++++. ...++.+.++++++.|+++| +++++|+ |+..+........+
T Consensus 179 ~~~~i~~~~~~~~~v~~~~~p~~---~~~~s~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~g----------- 244 (429)
T cd01303 179 TKRLIERWHGKSGRVKPAITPRF---APSCSEELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFP----------- 244 (429)
T ss_pred HHHHHHHHhCcCCceEEEEecCc---CCcCCHHHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHcC-----------
Confidence 222222 111 12344444432 23568899999999999999 9999997 55443221111100
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccc-cccccccCCCCC
Q 015110 257 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY-LAFSAEEIPDGD 335 (413)
Q Consensus 257 ~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~-l~l~~~~~~~~~ 335 (413)
...+ . ++...+.|+ .+.++.+.|+... . -+.++..++.|+.|. +||.. +.+. .+
T Consensus 245 ~~~~-------p----~~~l~~~G~----l~~~~~l~H~~~l-~-~~~~~~l~~~g~~v~--~~P~sn~~l~------~g 299 (429)
T cd01303 245 GARD-------Y----LDVYDKYGL----LTEKTVLAHCVHL-S-EEEFNLLKERGASVA--HCPTSNLFLG------SG 299 (429)
T ss_pred CCCC-------H----HHHHHHCCC----CCCCcEEEeCCCC-C-HHHHHHHHHcCCEEE--ECccchhhhc------cC
Confidence 0001 1 222233221 2556778887754 1 123555566665544 68852 1110 01
Q ss_pred cceEEcCCCCChhcHHHHHHHHhcCCccEEcCCCCC
Q 015110 336 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP 371 (413)
Q Consensus 336 ~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p 371 (413)
.+| +.+.++.|....+|||..+
T Consensus 300 -----~~~---------~~~~~~~Gv~v~lGtD~~~ 321 (429)
T cd01303 300 -----LFD---------VRKLLDAGIKVGLGTDVGG 321 (429)
T ss_pred -----CCC---------HHHHHHCCCeEEEeccCCC
Confidence 222 3456677999999999853
No 85
>PRK08418 chlorohydrolase; Provisional
Probab=99.74 E-value=1.3e-16 Score=157.57 Aligned_cols=181 Identities=14% Similarity=0.148 Sum_probs=104.7
Q ss_pred eEEEccEEEcCCC---c-eeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCC-------
Q 015110 45 YWLTSKRIVTPKG---V-ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT------- 113 (413)
Q Consensus 45 lli~n~~vi~~~~---~-~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~------- 113 (413)
++|+|++|++++. . .+++|+|+ |+|++||+..+.....++.++||++|++|+|||||+|+|+.+....
T Consensus 2 ~~i~~~~v~t~~~~~~~~~~~~v~v~-~~I~~ig~~~~~~~~~~~~~vid~~g~~v~PG~Vn~H~H~~~~~~rg~~~~~~ 80 (408)
T PRK08418 2 KIIGASYIFTCDENFEILEDGAVVFD-DKILEIGDYENLKKKYPNAKIQFFKNSVLLPAFINPHTHLEFSANKTTLDYGD 80 (408)
T ss_pred EEEEccEEEecCCCCceeeccEEEEC-CEEEEecCHHHHHhhCCCCcEEecCCcEEccCccccccchhhhhhccccCCCc
Confidence 4789999998763 2 47899999 9999999753221111245689999999999999999998643211
Q ss_pred --Cc-------------cch----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCC
Q 015110 114 --EW-------------EGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE 174 (413)
Q Consensus 114 --~~-------------e~~----~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (413)
.| +.. ..+..+++++||||+.|+. .. . ...+...+.. -+..+..... +....
T Consensus 81 ~~~wl~~~~~~~~~l~~~~~~~~~~~~~~E~l~~GtTtv~d~~-~~-~-----~~~~a~~~~G-iR~~~~~~~~-~~~~~ 151 (408)
T PRK08418 81 FIPWLGSVINHREDLLEKCKGALIQQAINEMLKSGVGTIGAIS-SF-G-----IDLEICAKSP-LRVVFFNEIL-GSNAS 151 (408)
T ss_pred hHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHhcCceEEEEee-cc-h-----hhHHHHHhcC-CeEEEEeeee-CCCcc
Confidence 00 011 1234577999999999885 21 1 1112111111 0111111111 11100
Q ss_pred c-hhhHH-HHHHHHH---cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec-CChhhch
Q 015110 175 N-AYNAS-ALEALLN---AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA-EMEKGSE 238 (413)
Q Consensus 175 ~-~~~~~-~l~~l~~---~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~ 238 (413)
. ....+ .++.... .....++..++++. ...++++.++++.+.|+++|+++++|+ |+..+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~aph~---~~t~s~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~ 218 (408)
T PRK08418 152 AVDELYQDFLARFEESKKFKSKKFIPAIAIHS---PYSVHPILAKKALQLAKKENLLVSTHFLESKAERE 218 (408)
T ss_pred chhhhHHHHHHHHHhhhcccCCceeEEEeCCC---CCCCCHHHHHHHHHHHHHcCCeEEEEecCCHHHHH
Confidence 0 01111 1111111 11223555555543 235689999999999999999999995 6666543
No 86
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=99.74 E-value=5.3e-16 Score=151.53 Aligned_cols=177 Identities=19% Similarity=0.272 Sum_probs=110.5
Q ss_pred cceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCC-CEEeeeeeecccccCCCCCCCccchHHH
Q 015110 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGE-AVIMPGLIDVHAHLDDPGRTEWEGFPSG 121 (413)
Q Consensus 43 ~~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G-~~vlPGlID~H~H~~~~~~~~~e~~~~~ 121 (413)
++++|+|++|+++. ..+|.|+||||++|++.... ++.++||++| ++|+|||||+|+|+..+.....++.
T Consensus 1 ~~~~i~n~~i~~~~---~~~v~i~~g~I~~v~~~~~~----~~~~~iD~~g~~~l~PG~ID~H~H~~~~~~~~~~~~--- 70 (365)
T TIGR03583 1 YDLLIKNGRTVNGT---PVDIAIEDGKIAAVGTTITG----SAKQTIDLEGETYVSAGWIDDHTHCFPKSALYYDEP--- 70 (365)
T ss_pred CcEEEECcEEecCC---eeEEEEECCEEEEecCCCCC----CCCeEEECCCCeEEecCEEEeeeccCCCcccccCCH---
Confidence 36899999999863 45899999999999864322 2458999999 9999999999999986543333333
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC--eeeEEeeceecC-Cc-----hhhHHHHHHHHH---cCC
Q 015110 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI--YVDVGFWGGLVP-EN-----AYNASALEALLN---AGV 190 (413)
Q Consensus 122 ~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~-----~~~~~~l~~l~~---~G~ 190 (413)
...++.+||||+++++ ++.+ .+.+.+....+....+. .+++..++ +.+ .. ....++++++++ .++
T Consensus 71 ~~~a~~~GvTt~~~~~-~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~G-~~~~~~~~~~~~~~~~~l~~~~~~~~~~v 146 (365)
T TIGR03583 71 DEIGVKTGVTTVVDAG-STGA--DDIDDFYRLAQQAKTNVFALLNISRIG-LVAQDELADLSNLDASAVKQAVERYPDFI 146 (365)
T ss_pred hHhhhcCceeEEEeCC-CCCC--CCHHHHHHHHHhhCCcEEEEeeehhcc-ccChhhhhChHHhHHHHHHHHHHhCcCcE
Confidence 2446899999999987 3322 34444444443332221 12222222 111 11 113445555554 246
Q ss_pred cEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChh
Q 015110 191 LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK 235 (413)
Q Consensus 191 ~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~ 235 (413)
.++|.+|+...+... ..++..+...+..+ ++|+++.+|+++..
T Consensus 147 v~~~~~~t~~~i~E~-gl~~~~~~~~l~~~-~~~~pv~vH~~~a~ 189 (365)
T TIGR03583 147 VGLKARMSKSVVGDN-GIEPLEIAKQIQQE-NLELPLMVHIGSAP 189 (365)
T ss_pred EEEEEeecccccccC-CcCHHHHHHHHHHh-cCCCcEEEEeCCCc
Confidence 788888874322221 22355555555544 78999999987655
No 87
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=99.73 E-value=1.2e-16 Score=159.71 Aligned_cols=67 Identities=28% Similarity=0.464 Sum_probs=55.6
Q ss_pred CCcceEEEccEEEcCCCc--eeeEEEEECCEEEEcccCCCCCCC-CCCCcEEecCCCEEeeeeeeccccc
Q 015110 41 PYNQYWLTSKRIVTPKGV--ISGAVEIKEGNIISIVSEEDWPRN-SKTGQVVDYGEAVIMPGLIDVHAHL 107 (413)
Q Consensus 41 ~~~~lli~n~~vi~~~~~--~~~~V~I~dG~I~~Ig~~~~~~~~-~~~~~vID~~G~~vlPGlID~H~H~ 107 (413)
...++++.||+|++++.. .-.+|+|+||||++||+..+.... .+..++||++|++|+|||||+|.|+
T Consensus 3 ~~adlil~nG~i~T~~~~~p~aeAvaI~dGrI~avG~~~~~~~~~~~~t~viDL~Gk~v~PGfvDaH~Hl 72 (535)
T COG1574 3 MAADLILHNGRIYTMDEARPTAEAVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLPGFVDAHLHL 72 (535)
T ss_pred cccceeEECCEEEeccCCCcceeEEEEcCCEEEEEcChHHHHhhcCCCceEEeCCCCEeccccchhhHHH
Confidence 346899999999998863 456999999999999987433221 1477999999999999999999998
No 88
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=99.72 E-value=4.4e-16 Score=152.60 Aligned_cols=164 Identities=19% Similarity=0.201 Sum_probs=92.7
Q ss_pred EEEECCEEEEcccCCCCCC-CCCCCcEEecCCCEEeeeeeecccccCCCCCC----------------------------
Q 015110 63 VEIKEGNIISIVSEEDWPR-NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---------------------------- 113 (413)
Q Consensus 63 V~I~dG~I~~Ig~~~~~~~-~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~---------------------------- 113 (413)
|+|+||||++|++....+. .+.+.++||++|++|+|||||+|+|+......
T Consensus 1 i~i~~g~I~~ig~~~~~~~~~~~~~~~iD~~G~~v~Pg~vn~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (371)
T cd01296 1 IAIRDGRIAAVGPAASLPAPGPAAAEEIDAGGRAVTPGLVDCHTHLVFAGDRVDEFAARLAGASYEEILAAGGGILSTVR 80 (371)
T ss_pred CEEECCEEEEEeCchhcccccCCCceEEECCCCEEecceeecCCCCcCCCCcHHHHHHHHCCCCHHHHHHcCCChHHHHH
Confidence 5799999999998543210 11255799999999999999999999763210
Q ss_pred -----Cccch----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEE--eece-ecCCc----hh
Q 015110 114 -----EWEGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVG--FWGG-LVPEN----AY 177 (413)
Q Consensus 114 -----~~e~~----~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~----~~ 177 (413)
+.+++ ......++++|||++.++...........+.++...+ +.....+++. +..+ ..+.. ..
T Consensus 81 ~~~~~~~~d~~~~a~~~~~~~~~~Gvt~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~l~~~~~~~~~~p~~~~~~~~ 159 (371)
T cd01296 81 ATRAASEDELFASALRRLARMLRHGTTTVEVKSGYGLDLETELKMLRVIRR-LKEEGPVDLVSTFLGAHAVPPEYKGREE 159 (371)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHHHHHH-HHhhCCCceEeeeeecccCCcccCChHH
Confidence 00111 2345667899999999842111111111222222222 2221122222 1100 11110 11
Q ss_pred hH----H-HHHHHH-HcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015110 178 NA----S-ALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (413)
Q Consensus 178 ~~----~-~l~~l~-~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~ 233 (413)
.. + .++... +.++.+++.+... ...+.+.++++++.|+++|+++.+|+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~A~~~g~~v~~H~~e 215 (371)
T cd01296 160 YIDLVIEEVLPAVAEENLADFCDVFCEK------GAFSLEQSRRILEAAKEAGLPVKIHADE 215 (371)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeecC------CccCHHHHHHHHHHHHHCCCeEEEEEcC
Confidence 11 1 122111 2556777765322 2356889999999999999999999854
No 89
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=99.71 E-value=1.1e-15 Score=152.08 Aligned_cols=269 Identities=19% Similarity=0.236 Sum_probs=148.9
Q ss_pred cceEEEccEEEcCCCc---eeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCC------
Q 015110 43 NQYWLTSKRIVTPKGV---ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT------ 113 (413)
Q Consensus 43 ~~lli~n~~vi~~~~~---~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~------ 113 (413)
..++|+|..++..++. .++++.|+||||+.|++....+ ++.++||++|++|+|||||+|+|+.+....
T Consensus 2 ~~~~i~~~~~~~~d~~~~~~~~~~~i~~g~I~~ig~~~~~~---~~~~~iD~~~~lv~Pgfvn~H~H~~~t~~~g~~~~~ 78 (421)
T COG0402 2 TMLLIRGDLLLTNDPEGRIEDGDLVIEDGKIVAIGANAEGP---PDEEVIDAKGKLVLPGFVNAHTHLDQTLLRGLADDL 78 (421)
T ss_pred cceeeeCcEEeecCcccceeeeeEEEcCCEEEEeCCcCCCC---CCceeecCCCCEeccCccccccchHHHHHhhhhccc
Confidence 4577888888875432 4699999999999999876542 367899999999999999999998654210
Q ss_pred ------------------CccchH----HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeec--
Q 015110 114 ------------------EWEGFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG-- 169 (413)
Q Consensus 114 ------------------~~e~~~----~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 169 (413)
+.++++ .....++++||||++.+. +..+. .....++...+.. .+......+..
T Consensus 79 ~l~~wl~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~t~~~~~~-~~~~~-~~~~~~~a~~~~g-~r~~~~~~~~~~~ 155 (421)
T COG0402 79 PLLEWLERYVWPREARLLTEEDLYARALLALLEMLRNGTTTARTHV-DVVAE-SADAAFEAALEVG-LRAVLGPVLQDVA 155 (421)
T ss_pred chHHHHHHHHhHHHhhcCCHHHHHHHHHHHHHHHHhcCcccccccc-chhhh-hHHHHHHHHHHhC-CeeEeeeccccCC
Confidence 011222 345677999999976654 21110 1111222221111 11111111111
Q ss_pred ---eecCCchh---hHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec-CChhhchhhHh
Q 015110 170 ---GLVPENAY---NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA-EMEKGSERHVK 242 (413)
Q Consensus 170 ---~~~~~~~~---~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~~ 242 (413)
......+. ..+.++++...| .+++...++. ...++++.++.+.+.++++|+++++|+ |+.+++.....
T Consensus 156 ~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~---~~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~ 230 (421)
T COG0402 156 FPDPGAETDEELEETEELLREAHGLG--RDVVGLAPHF---PYTVSPELLESLDELARKYGLPVHIHLAETLDEVERVLE 230 (421)
T ss_pred CCcccccchHHHHHHHHHHHHHhcCC--CeeEEEecCC---CCCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHh
Confidence 00111111 123333443445 3344444431 235789999999999999999999996 77766543332
Q ss_pred hccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEcccc
Q 015110 243 LEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPH 322 (413)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~ 322 (413)
..+ .+ .+... ...++..+ .-+-+|+.|++. +.+++++ +.| +++..||-
T Consensus 231 ~~g-------------~~-------~~~~~----~~~g~l~~-~~~~~H~~~~~~--~e~~~l~---~~g--~~v~~cP~ 278 (421)
T COG0402 231 PYG-------------AR-------PVERL----DLLGLLGS-HTLLAHCVHLSE--EELELLA---ESG--ASVVHCPR 278 (421)
T ss_pred hcC-------------CC-------HHHHH----HHcCCCCC-CeEEEEeccCCH--HHHHHHh---hCC--CeEEECcc
Confidence 111 11 11111 11111100 123356666655 3455555 455 45558995
Q ss_pred -ccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEEcCCCCCCCh
Q 015110 323 -YLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVP 374 (413)
Q Consensus 323 -~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p~~~ 374 (413)
++.|. .| +.| +++.+..|....+|||.+.++.
T Consensus 279 sN~~L~------sG----~~p----------~~~~~~~gv~v~~gTD~~~~~~ 311 (421)
T COG0402 279 SNLKLG------SG----IAP----------VRRLLERGVNVALGTDGAASNN 311 (421)
T ss_pred hhcccc------CC----CCC----------HHHHHHcCCCEEEecCCccccC
Confidence 22221 11 222 3556677888999999976653
No 90
>PRK10027 cryptic adenine deaminase; Provisional
Probab=99.71 E-value=2.7e-15 Score=152.45 Aligned_cols=228 Identities=20% Similarity=0.166 Sum_probs=149.4
Q ss_pred cceEEEccEEEcCCC--ceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchHH
Q 015110 43 NQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 120 (413)
Q Consensus 43 ~~lli~n~~vi~~~~--~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~ 120 (413)
.+++|+|++|+++.. ...++|+|+||+|++|++..... .+.++||++|++|+|||||+|+|+..+.. .++.+
T Consensus 30 ~dllI~ng~vv~~~~~~~~~~~V~I~~GrI~~Vg~~~~~~---~~~~vIDa~G~~v~PGlIDaHvHiess~~-~p~~~-- 103 (588)
T PRK10027 30 ADYIIDNVSILDLINGGEISGPIVIKGRYIAGVGAEYADA---PALQRIDARGATAVPGFIDAHLHIESSMM-TPVTF-- 103 (588)
T ss_pred CCEEEECcEEEeCCCCcEEeeEEEEECCEEEEeCCCCCCC---CCCeEEECCCCEEEECeEeccccCCcccC-CHhHH--
Confidence 578999999998643 45789999999999997643211 24689999999999999999999987654 33333
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeece----ecC--Cc---hhhHHHHHHHHH-cCC
Q 015110 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG----LVP--EN---AYNASALEALLN-AGV 190 (413)
Q Consensus 121 ~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~---~~~~~~l~~l~~-~G~ 190 (413)
.+.++.+||||++++| +..+.....+.++..++.+.... .++.+... .++ +. .-..++++++++ .++
T Consensus 104 -a~aal~~G~TtVv~dP-hei~nv~g~~gi~~~l~~a~~~p-~~~~~~~ps~vpa~~~~Et~Ga~~~~~~~~~~l~~~~v 180 (588)
T PRK10027 104 -ETATLPRGLTTVICDP-HEIVNVMGEAGFAWFARCAEQAR-QNQYLQVSSCVPALEGCDVNGASFTLEQMLAWRDHPQV 180 (588)
T ss_pred -HHHHHhCceEEEEcCC-CCcccCCCHHHHHHHHHHhhhCC-CeeEEeecccCcCCcccccCCCcCCHHHHHHHhcCCCc
Confidence 4578999999999999 67676777778877776654332 23332211 111 00 113567777775 567
Q ss_pred cEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhh--chhhHhhccCcCCccccccCCCCCchHHHHHH
Q 015110 191 LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG--SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 268 (413)
Q Consensus 191 ~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~ 268 (413)
.++.-.|.+++. ...+++.+.++. .+ .|+++.-|+-.... ...++.. | ..+ -.|...
T Consensus 181 ~glgEvMn~~~V---~~~d~~~~~ki~-~~--~~~~idGH~p~l~g~~L~ay~aa-G----i~s----------DHE~~t 239 (588)
T PRK10027 181 TGLAEMMDYPGV---ISGQNALLDKLD-AF--RHLTLDGHCPGLGGKELNAYIAA-G----IEN----------CHESYQ 239 (588)
T ss_pred eeEEeccCcccc---ccCCHHHHHHHH-Hh--CCCceECCCCCCChHHHHHHHHc-C----CCC----------CcccCC
Confidence 788777877643 224666777766 33 89999999753321 1112111 1 110 012233
Q ss_pred HHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHH
Q 015110 269 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAK 309 (413)
Q Consensus 269 v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak 309 (413)
.+++++-.+ .|..+.+-+-|.. ..++.+..+.
T Consensus 240 ~eea~eklr--------~Gm~v~iRegS~~-~nl~~l~~~~ 271 (588)
T PRK10027 240 LEEGRRKLQ--------LGMSLMIREGSAA-RNLNALAPLI 271 (588)
T ss_pred HHHHHHHHH--------CCCEEEEeCCccc-cCHHHHHHHh
Confidence 444555444 3899999999987 6677776664
No 91
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=99.71 E-value=1.7e-16 Score=155.08 Aligned_cols=184 Identities=21% Similarity=0.277 Sum_probs=122.3
Q ss_pred eEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCC-CC--CccchHHH
Q 015110 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG-RT--EWEGFPSG 121 (413)
Q Consensus 45 lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~-~~--~~e~~~~~ 121 (413)
++|+|++|+++....+++|.|+||+|++|++....+ .+.++||++|++|+|||||+|+|...+. +. ..+++...
T Consensus 1 ~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~~~---~~~~vid~~g~~l~PG~iD~H~H~~~g~~~~~~~~e~~~~~ 77 (374)
T cd00854 1 LIIKNARILTPGGLEDGAVLVEDGKIVAIGPEDELE---EADEIIDLKGQYLVPGFIDIHIHGGGGADFMDGTAEALKTI 77 (374)
T ss_pred CEEEeEEEeCCCEEcccEEEEECCEEEEecCCCCcc---cCCcEEECCCCEecccEEEeeecccCCCCCCCCCHHHHHHH
Confidence 378999999984345789999999999998754322 2458999999999999999999987532 22 24677788
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-CeeeEEee--ceec-CC-----c-----hhhHHHHHHHHH
Q 015110 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFW--GGLV-PE-----N-----AYNASALEALLN 187 (413)
Q Consensus 122 ~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~-~~-----~-----~~~~~~l~~l~~ 187 (413)
++.++++||||++++. .+.+.....+.+..+.+..... ....++++ +.+. +. + ....++++++.+
T Consensus 78 ~~~~~~~GvTtv~~t~-~t~~~~~~~~~l~~~~~~~~~~~g~~~~g~hleGP~~~~~~~g~h~~~~~~~~~~~~~~~~~~ 156 (374)
T cd00854 78 AEALAKHGTTSFLPTT-VTAPPEEIAKALAAIAEAIAEGQGAEILGIHLEGPFISPEKKGAHPPEYLRAPDPEELKKWLE 156 (374)
T ss_pred HHHHHccCcceeeccc-cCCCHHHHHHHHHHHHHHhhcCCCCeeEEEeeecCccCcccCCCCCHHHcCCcCHHHHHHHHH
Confidence 9999999999999987 4444333344445544443322 12222222 1111 10 1 113467888888
Q ss_pred cCCcEEEEeecCCCCCCCCCCCHHHH--HHHHHHHHhcCCCEE-EecC-ChhhchhhHh
Q 015110 188 AGVLGLKSFMCPSGINDFPMTNASHI--KEGLSVLARYKRPLL-VHAE-MEKGSERHVK 242 (413)
Q Consensus 188 ~G~~~ik~~~~~~~~~~~~~~~~~~l--~~~~~~A~~~g~~v~-~H~e-~~~~~~~~~~ 242 (413)
.+...+|++.- .+|.. .++++.++++|+++. .|.. +...+.+.+.
T Consensus 157 ~~~~~ik~~tl----------aPE~~~~~~~i~~~~~~gi~v~~GH~~a~~~~~~~a~~ 205 (374)
T cd00854 157 AAGGLIKLVTL----------APELDGALELIRYLVERGIIVSIGHSDATYEQAVAAFE 205 (374)
T ss_pred hcCCCEEEEEE----------CCCCCChHHHHHHHHHCCeEEEeeCCcCCHHHHHHHHH
Confidence 77778888632 22333 678899999999995 8975 4344444443
No 92
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=99.71 E-value=8.5e-16 Score=150.87 Aligned_cols=51 Identities=27% Similarity=0.489 Sum_probs=41.3
Q ss_pred eeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCC
Q 015110 59 ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110 (413)
Q Consensus 59 ~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~ 110 (413)
.+++|+|+||+|++||+....+. ..+.++||++|++|||||||+|+|+...
T Consensus 2 ~~~~v~i~~g~I~~vg~~~~~~~-~~~~~~iD~~g~~v~PGlin~H~H~~~~ 52 (377)
T TIGR01224 2 EDAVILIHGGKIVWIGQLAALPG-EEATEIIDCGGGLVTPGLVDPHTHLVFA 52 (377)
T ss_pred CceEEEEECCEEEEEechhhCCc-ccCCeEEeCCCCEEcccEEecccCcccc
Confidence 46899999999999998532221 1256899999999999999999999753
No 93
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=99.67 E-value=3.2e-15 Score=146.83 Aligned_cols=235 Identities=23% Similarity=0.302 Sum_probs=153.2
Q ss_pred CCCcceEEEccEEEcCCC--ceeeEEEEECCEEEE-cccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCcc
Q 015110 40 LPYNQYWLTSKRIVTPKG--VISGAVEIKEGNIIS-IVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWE 116 (413)
Q Consensus 40 ~~~~~lli~n~~vi~~~~--~~~~~V~I~dG~I~~-Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e 116 (413)
....+++++||+++|.-. +..++|.|.+|||+. +++.. .++.++||+.|+++.|||||.|+|+..+..+.
T Consensus 21 ~~~adlv~~ng~ivdv~~gei~~~dIaI~~grI~~v~~~~~-----~e~~~~iDa~g~yivPGfID~H~HIESSm~tP-- 93 (584)
T COG1001 21 RAKADLVLKNGRIVDVVTGEIYKGDIAIAGGRIVGVIGEYR-----AEATEVIDAAGRYIVPGFIDAHLHIESSMLTP-- 93 (584)
T ss_pred CCCCCEEEECCEEEEeeeccEEeeeEEEECCEEEEeecCcC-----cccceeecCCCCEeccceeecceeccccccCH--
Confidence 445699999999998754 568999999999999 55433 14779999999999999999999998765432
Q ss_pred chHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeecee-cCCc-------hhhHHHHHHHHH-
Q 015110 117 GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL-VPEN-------AYNASALEALLN- 187 (413)
Q Consensus 117 ~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~l~~l~~- 187 (413)
...++..+..||||++.-|. ........+.++..++.++. ..+++.++.+. ++.. .-..+.++++++
T Consensus 94 --~~FA~~Vlp~GtTtvV~DPH-EIaNV~G~~Gi~~ml~~a~~-~pl~~~~~~pScVPat~~Et~Ga~l~a~~i~e~~~~ 169 (584)
T COG1001 94 --SEFARAVLPHGTTTVVSDPH-EIANVLGEDGIRFMLDEAKE-TPLKVYVMLPSCVPATPFETSGAELTAEDIKELLEH 169 (584)
T ss_pred --HHHHHHhhccCceEEeeCcH-HHHhhccHHHHHHHHHHHhh-CCeEEEEecccCccCCccccCCceecHHHHHHHhhC
Confidence 45678889999999997651 11122345666666666654 45566554432 2211 113567777776
Q ss_pred cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhch--hhHhhccCcCCccccccCCCCCchHHH
Q 015110 188 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSE--RHVKLEDDTLDTRSYSTYLKTRPPSWE 265 (413)
Q Consensus 188 ~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~E 265 (413)
..+.++.-+|.+++. ...++.+...++.++++|+++.-|+....... .++. .|. ..+ .|
T Consensus 170 p~Vigl~E~Mn~pgV----i~~D~~~l~kl~a~~~~~k~VdGHapgl~g~~Ln~Y~a-aGi---~tD-----------HE 230 (584)
T COG1001 170 PEVIGLGEMMNFPGV----IEGDPDMLAKLEAARKAGKPVDGHAPGLSGKELNAYIA-AGI---STD-----------HE 230 (584)
T ss_pred CCccchhhhcCCchh----ccCCHHHHHHHHHHHHcCCeecccCCCCChHHHHHHHh-cCC---CcC-----------cc
Confidence 456677667776543 23456777888999999999999986544211 1111 110 111 12
Q ss_pred HHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHH-HHHHHCCC
Q 015110 266 EAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLL-MEAKTNGD 313 (413)
Q Consensus 266 ~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i-~~ak~~G~ 313 (413)
....+++++-.+ .|..+.+-+-|.. ..++.+ ....+.|.
T Consensus 231 ~~t~EEa~~klr--------~Gm~i~iReGS~a-~dl~~l~~~i~e~~~ 270 (584)
T COG1001 231 STTAEEALEKLR--------LGMKIMIREGSAA-KDLAALLPAITELGS 270 (584)
T ss_pred cCCHHHHHHHHh--------CCcEEEEEcCchh-hhHHHHHHHHhhcCC
Confidence 223344444443 3888999999877 555444 44444553
No 94
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.67 E-value=3.2e-15 Score=148.37 Aligned_cols=77 Identities=21% Similarity=0.272 Sum_probs=56.0
Q ss_pred cCCCce-eeEE-EEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCC---CCCC--------------
Q 015110 54 TPKGVI-SGAV-EIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRTE-------------- 114 (413)
Q Consensus 54 ~~~~~~-~~~V-~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~---~~~~-------------- 114 (413)
++++.. +++| +|+||+|++||+... .++||++|++|||||||+|+|+.+. +...
T Consensus 3 ~~~~~~~~~~i~~v~~g~I~~Vg~~~~-------~~~iD~~g~lv~PGfVn~H~Hl~~~~~rg~~~~~~~~~~~l~~w~~ 75 (418)
T cd01313 3 LPEGWERNVRIEVDADGRIAAVNPDTA-------TEAVALLGGALLPGMPNLHSHAFQRAMAGLTEYRGSAADSFWTWRE 75 (418)
T ss_pred CCCceecCeEEEEeCCCeEEEecCCCC-------CcccccCCCeeccCccccCccHHHHHhcccccccCCCCCChhhHHH
Confidence 345543 6899 999999999997532 2469999999999999999999753 1100
Q ss_pred ----------ccch----HHHHHHHHhCCceEEEeCC
Q 015110 115 ----------WEGF----PSGTKAAAAGGITTLIDMP 137 (413)
Q Consensus 115 ----------~e~~----~~~~~~al~~GvTTv~d~~ 137 (413)
.+++ ..++.+++++||||++|+.
T Consensus 76 ~~~~~~~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~ 112 (418)
T cd01313 76 LMYRFAARLTPEQIEAIARQLYIEMLLAGITAVGEFH 112 (418)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 0111 1234567999999999974
No 95
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=99.65 E-value=4e-15 Score=144.73 Aligned_cols=187 Identities=19% Similarity=0.236 Sum_probs=119.4
Q ss_pred cceEEEccEEEcCCCce-eeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCC---CCccch
Q 015110 43 NQYWLTSKRIVTPKGVI-SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR---TEWEGF 118 (413)
Q Consensus 43 ~~lli~n~~vi~~~~~~-~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~---~~~e~~ 118 (413)
++++|+|++|+++++.. +++|.|+||||++|++....+ ++.++||++|++|+|||||+|+|...... .+.+++
T Consensus 3 ~~~~i~n~~i~~~~~~~~~~~i~V~dGkI~~I~~~~~~~---~~~~viD~~G~~i~PGfID~HvHg~~g~~~~~~~~e~~ 79 (380)
T TIGR00221 3 ESYLLKDIAIVTGNEVIDNGAVGINDGKISTVSTEAELE---PEIKEIDLPGNVLTPGFIDIHIHGCGGVDTNDASFETL 79 (380)
T ss_pred ceEEEEeeEEECCCCEEeccEEEEECCEEEEEcccccCC---CCCeEEECCCCEEccceeeeeeccccCcCCCCCCHHHH
Confidence 36899999999987765 689999999999998753322 24579999999999999999999865321 133678
Q ss_pred HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHH-hcCCeeeEEeece--ec-CC-----ch-----hhHHHHHH
Q 015110 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA-EKRIYVDVGFWGG--LV-PE-----NA-----YNASALEA 184 (413)
Q Consensus 119 ~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~-~~-----~~-----~~~~~l~~ 184 (413)
...++.++++||||++.+. .+.+.....+.++...+.. .......+++|.. +. +. ++ -..+++++
T Consensus 80 ~~~~~~~~~~GvTt~l~t~-~t~~~~~~~~~l~~~~~~~~~~~~a~~lG~HlEGPfi~~~~~Gah~~~~i~~p~~~~~~~ 158 (380)
T TIGR00221 80 EIMSERLPKSGCTSFLPTL-ITQPDENIKQAVKNMREYLAKEKNAQALGLHLEGPFLSPEKKGAHPPEYIREPDVELFKK 158 (380)
T ss_pred HHHHHHHHhcCeeEEeeec-cCCCHHHHHHHHHHHHHHHhccCCceeeeEeeecCcCChhhcCCCCHHHhhCcCHHHHHH
Confidence 8889999999999999987 4444433344455444332 1223345555432 11 10 11 13467777
Q ss_pred HHHcCCcEEEEe-ecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEE-Eec-CChhhchhhHh
Q 015110 185 LLNAGVLGLKSF-MCPSGINDFPMTNASHIKEGLSVLARYKRPLL-VHA-EMEKGSERHVK 242 (413)
Q Consensus 185 l~~~G~~~ik~~-~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~-~H~-e~~~~~~~~~~ 242 (413)
+.+.....+|.. ++| ..+. -.++++.+.++|+.+. .|. -+.+.+...+.
T Consensus 159 ~~~~~~~~i~~vTlAP-------E~~~--~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~ 210 (380)
T TIGR00221 159 FLCEAGGVITKVTLAP-------EEDQ--HFELIRHLKDAGIIVSAGHTNATYELAKAAFK 210 (380)
T ss_pred HHHhcCCCEEEEEECC-------CCCC--hHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHH
Confidence 776433345543 222 2211 1356667788898876 575 44454444443
No 96
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.64 E-value=1e-14 Score=142.76 Aligned_cols=159 Identities=16% Similarity=0.207 Sum_probs=90.5
Q ss_pred CEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCC---------C-------------ccch----HHH
Q 015110 68 GNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---------E-------------WEGF----PSG 121 (413)
Q Consensus 68 G~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~---------~-------------~e~~----~~~ 121 (413)
|+|++||+..+.....++.+++|++|++|||||||+|+|+.+..+. . .++. ..+
T Consensus 1 ~~I~aVG~~~~~~~~~~~~~v~d~~g~~v~PGlVnaH~H~~~~~~rg~~~~~~~~~wl~~~~~~~~~~~~e~~~~~a~~~ 80 (381)
T cd01312 1 DKILEVGDYEKLEKRYPGAKHEFFPNGVLLPGLINAHTHLEFSANVAQFTYGRFRAWLLSVINSRDELLKQPWEEAIRQG 80 (381)
T ss_pred CeEEEECChHHHHhhcCCCeEEecCCcEEecCccccccccchhccccccCCCchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 6899999854322222466899999999999999999999654221 0 1111 234
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCc-hhhH-HHHHHHHH---cCCcEEEEe
Q 015110 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-AYNA-SALEALLN---AGVLGLKSF 196 (413)
Q Consensus 122 ~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~l~~l~~---~G~~~ik~~ 196 (413)
+.+++++||||+.|+. .. .+.++...+ ..-+..+.+.+.. ..+.. .+.. +.++...+ ..-..++..
T Consensus 81 ~~E~l~~G~Tt~~d~~-~~------~~~~~a~~~-~GiR~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 151 (381)
T cd01312 81 IRQMLESGTTSIGAIS-SD------GSLLPALAS-SGLRGVFFNEVIG-SNPSAIDFKGETFLERFKRSKSFESQLFIPA 151 (381)
T ss_pred HHHHHHhCCeEEEEec-CC------HHHHHHHHH-cCCcEEEEEeeEC-CCCchhhhhHHHHHHHHHHhhccCccceEEE
Confidence 5567999999999986 21 122222211 1112222222211 11111 0111 11222211 111235555
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec-CChhhch
Q 015110 197 MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA-EMEKGSE 238 (413)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~ 238 (413)
++++. ...++++.++.+.+.|+++|+++++|+ |+..+..
T Consensus 152 ~~p~a---~~~~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~ 191 (381)
T cd01312 152 ISPHA---PYSVHPELAQDLIDLAKKLNLPLSTHFLESKEERE 191 (381)
T ss_pred ECCCC---CcccCHHHHHHHHHHHHHcCCeEEEEecCcHHHHH
Confidence 55542 135689999999999999999999996 6665543
No 97
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=99.64 E-value=7e-15 Score=148.87 Aligned_cols=121 Identities=18% Similarity=0.131 Sum_probs=75.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCC
Q 015110 206 PMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 285 (413)
Q Consensus 206 ~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~ 285 (413)
+.++.+++.++++.|+++|+++++|+.+...+.. .+..+-.+....+ .
T Consensus 290 ~~~~~e~l~~~~~~a~~~g~~v~~Ha~gd~~i~~----------------------------~l~~~~~~~~~~g----~ 337 (479)
T cd01300 290 LLISPEELEELVRAADEAGLQVAIHAIGDRAVDT----------------------------VLDALEAALKDNP----R 337 (479)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEecHHHHHH----------------------------HHHHHHHHHHhcC----C
Confidence 3568999999999999999999999976443211 1111111122211 1
Q ss_pred CCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCC--CC-cceEEcCCCCChhcHHHHHHHHhcCCc
Q 015110 286 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD--GD-TRFKCAPPIRDAANKEKLWEALMDGHI 362 (413)
Q Consensus 286 ~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~--~~-~~~k~~Pplr~~~~~~~L~~~l~~G~i 362 (413)
.+.+..+.|++.. . -+.++.+++.|+ .+++||+++.+....... .+ ...+..+| +...++.|..
T Consensus 338 ~~~r~~i~H~~~~-~-~~~~~~l~~~gv--~~~~~P~~~~~~~~~~~~~~lg~~~~~~~~p---------~~~~~~~Gv~ 404 (479)
T cd01300 338 ADHRHRIEHAQLV-S-PDDIPRFAKLGV--IASVQPNHLYSDGDAAEDRRLGEERAKRSYP---------FRSLLDAGVP 404 (479)
T ss_pred CCCCceeeecccC-C-HHHHHHHHHcCC--ceEeCcccccCchHHHHHhcccHHHHhcCch---------HHHHHHCCCe
Confidence 3577899999875 2 356677777774 556899877654322111 01 11223333 3456778999
Q ss_pred cEEcCCCCC
Q 015110 363 DMLSSDHSP 371 (413)
Q Consensus 363 ~~i~sDh~p 371 (413)
.++|||+.+
T Consensus 405 v~lGSD~~~ 413 (479)
T cd01300 405 VALGSDAPV 413 (479)
T ss_pred eeccCCCCC
Confidence 999999953
No 98
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=99.64 E-value=8.3e-16 Score=112.01 Aligned_cols=68 Identities=35% Similarity=0.658 Sum_probs=49.0
Q ss_pred EEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCCCccchHHHHHHHHhCCceEE
Q 015110 63 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTL 133 (413)
Q Consensus 63 V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv 133 (413)
|+|+||||++|++....+. ++.++||++|++|+|||||+|+|+.++.... .........++++|||||
T Consensus 1 V~I~~g~I~~v~~~~~~~~--~~~~viD~~g~~v~PG~ID~H~H~~~~~~~~-~~~~~~~~~~l~~GvTTV 68 (68)
T PF13594_consen 1 VLIEDGKIVAVGPDSELPA--DAAEVIDAKGKYVMPGFIDMHTHLGEPGWQS-LDPETEAAAALAGGVTTV 68 (68)
T ss_dssp EEEETTEEEEEESSCCTTS--TCCEEEEETTCEEEE-EEEEEE-TTTTCEGG-CTCHHHHHHHHHTTEEEE
T ss_pred CEEECCEEEEeCCCCCCCC--CCCEEEECCCCEEeCCeEeeeeccccccccc-cchhhHHHHHHCcceeeC
Confidence 6899999999965443331 3667899999999999999999987432111 112456777889999997
No 99
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=99.63 E-value=1.1e-14 Score=146.31 Aligned_cols=181 Identities=17% Similarity=0.217 Sum_probs=97.9
Q ss_pred cceEEEccEEEcCCCceeeEEEEEC-CEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCC---CC------
Q 015110 43 NQYWLTSKRIVTPKGVISGAVEIKE-GNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GR------ 112 (413)
Q Consensus 43 ~~lli~n~~vi~~~~~~~~~V~I~d-G~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~---~~------ 112 (413)
..++++++.+.++ -..+++|+|+| |||++||+.... + .++.+|++|||||||+|+|+.+. +.
T Consensus 3 ~~~~~~~~~~~~~-~~~~~~v~i~~~grI~~vg~~~~~----~---~~~~~g~~vlPGlVn~H~H~~~~~~rg~~~~~~~ 74 (456)
T PRK09229 3 TTLFAERALLPDG-WARNVRLTVDADGRIAAVEPGAAP----A---GAERLAGPVLPGMPNLHSHAFQRAMAGLTEVRGP 74 (456)
T ss_pred hhHHHHHhhCCCc-cccCcEEEEecCCeEEEecCCCCC----c---cccccCcEEccCcccccccHhhHhhcCcccccCC
Confidence 3455666666333 12478999999 999999985321 1 24568999999999999998632 10
Q ss_pred -----CCc-------------cch----HHHHHHHHhCCceEEEeCCCCC-CC----CCCcHHHHHHHHHHHhcC-Ceee
Q 015110 113 -----TEW-------------EGF----PSGTKAAAAGGITTLIDMPLNS-DP----STISTETLKLKVDAAEKR-IYVD 164 (413)
Q Consensus 113 -----~~~-------------e~~----~~~~~~al~~GvTTv~d~~~~~-~~----~~~~~~~~~~~~~~~~~~-~~~~ 164 (413)
..| ++. ...+.+++++||||+.|+.... .+ .....+......+..... ....
T Consensus 75 ~~~~l~~w~~~~~~~~~~~~~e~~~~~a~~~~~e~L~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~e~GiR~~ 154 (456)
T PRK09229 75 PQDSFWSWRELMYRFALRLTPDQLEAIARQLYVEMLEAGYTSVGEFHYLHHDPDGTPYADPAEMALRIVAAARAAGIGLT 154 (456)
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCcEEEeeeeeccCCCCCccCChHHHHHHHHHHHHHcCCEEE
Confidence 001 111 1245567999999999975110 00 011122222223322211 1111
Q ss_pred EE--ee--cee---cCC--------c-hhhHHHHHHHHH--cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 015110 165 VG--FW--GGL---VPE--------N-AYNASALEALLN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP 226 (413)
Q Consensus 165 ~~--~~--~~~---~~~--------~-~~~~~~l~~l~~--~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~ 226 (413)
++ .+ .+. .+. . ....+.++++.+ .+...+...+++.. ...+++++++++++.| ++|++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~s~e~l~~~~~~A-~~g~~ 230 (456)
T PRK09229 155 LLPVLYAHSGFGGQPPNPGQRRFINDPDGFLRLLEALRRALAALPGARLGLAPHS---LRAVTPDQLAAVLALA-APDGP 230 (456)
T ss_pred eceeeeecCCCCCCCCchhhcccccCHHHHHHHHHHHHHhhcCCCceEEEEeCCC---CCCCCHHHHHHHHHHh-cCCCc
Confidence 11 11 000 000 0 111222223322 11122444445432 2357899999999999 99999
Q ss_pred EEEec-CChh
Q 015110 227 LLVHA-EMEK 235 (413)
Q Consensus 227 v~~H~-e~~~ 235 (413)
+++|+ |+..
T Consensus 231 i~~H~~e~~~ 240 (456)
T PRK09229 231 VHIHIAEQTK 240 (456)
T ss_pred eEEEeCCCHH
Confidence 99998 4443
No 100
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=99.61 E-value=2.9e-14 Score=143.02 Aligned_cols=84 Identities=19% Similarity=0.366 Sum_probs=56.8
Q ss_pred EEEccEEEcCCCc-eeeEEEEE-CCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCC---CCC-------
Q 015110 46 WLTSKRIVTPKGV-ISGAVEIK-EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRT------- 113 (413)
Q Consensus 46 li~n~~vi~~~~~-~~~~V~I~-dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~---~~~------- 113 (413)
.++|+++ +++. .+++|+|+ ||+|++||+..... +. .+..|++|||||||+|+|+.+. +..
T Consensus 5 ~~~~~~~--~~~~~~~~~i~I~~~g~I~~vg~~~~~~---~~---~~~~g~lvlPGfVn~H~H~~~~~~rg~~~~~~~~~ 76 (455)
T TIGR02022 5 WAERALL--PDGWAEGVRIAVAADGRILAIETGVPAA---PG---AERLSGPLLPGLANLHSHAFQRAMAGLAEVAGSGG 76 (455)
T ss_pred hHHhccC--CCccccCceEEEecCCEEEEecCCCCcc---cc---cccCCCEEccCCcccCcchhhHhhcCCcccccCCC
Confidence 4566666 3333 46899999 99999999854321 12 2346899999999999998653 110
Q ss_pred ----Cc-------------cchH----HHHHHHHhCCceEEEeCC
Q 015110 114 ----EW-------------EGFP----SGTKAAAAGGITTLIDMP 137 (413)
Q Consensus 114 ----~~-------------e~~~----~~~~~al~~GvTTv~d~~ 137 (413)
.| ++++ .++.+++++||||++|+.
T Consensus 77 ~~l~~w~~~~~~~~~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~ 121 (455)
T TIGR02022 77 DSFWTWRELMYRFVDRLTPEQLQAIARQLYVEMLEAGFTRVGEFH 121 (455)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCEEEeee
Confidence 01 1121 234567999999999974
No 101
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=99.60 E-value=2.6e-14 Score=139.31 Aligned_cols=183 Identities=18% Similarity=0.199 Sum_probs=113.9
Q ss_pred eEEEccEEEcCCCce-eeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCC-------CCcc
Q 015110 45 YWLTSKRIVTPKGVI-SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR-------TEWE 116 (413)
Q Consensus 45 lli~n~~vi~~~~~~-~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-------~~~e 116 (413)
++|+|++|+++++.. +++|+|+||+|++|++....+ .+.++||++|++|+|||||+|+|...... ...+
T Consensus 2 ~~i~n~~i~~~~~~~~~~~v~IedgkI~~I~~~~~~~---~~~~~ID~~G~~l~PG~ID~HvHG~~g~~~~~~~~~~~~~ 78 (382)
T PRK11170 2 YALTNGRIYTGHEVLDDHAVVIADGLIEAVCPVAELP---PGIEQRDLNGAILSPGFIDLQLNGCGGVQFNDTAEAISVE 78 (382)
T ss_pred EEEEeeEEECCCCeEeCCEEEEECCEEEEecCCccCC---CCCeEEeCCCCEEccceeeeeecCccCcccccCccCCCHH
Confidence 679999999998765 579999999999998753322 24579999999999999999999754311 1335
Q ss_pred chHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeece--ec-CC-----chh-----hHHHHH
Q 015110 117 GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG--LV-PE-----NAY-----NASALE 183 (413)
Q Consensus 117 ~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~-----~~~-----~~~~l~ 183 (413)
+++...+.++++|||+++... .+.+.....+.++...+.........+++|.. +. +. +++ ..++++
T Consensus 79 ~l~~~~~~~~~~GvTt~lpT~-it~~~~~~~~~l~~~~~~~~~~~a~~~G~HlEGPfi~~~~~Gah~~~~~~~p~~~~~~ 157 (382)
T PRK11170 79 TLEIMQKANEKSGCTSFLPTL-ITSSDELMKQAVRVMREYLAKHPNQALGLHLEGPYLNLVKKGTHNPEFIRKPDAEMVD 157 (382)
T ss_pred HHHHHHHHHHhcCEeEEeeec-cCCCHHHHHHHHHHHHHHHhcCCCeEEEEEeecCCCCcccCCCCCHHHhcCcCHHHHH
Confidence 566777888999999999876 33333223344444433333233445555432 11 11 111 245666
Q ss_pred HHHHcCCcEEEEe-ecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEE-ec-CChhhchhhHh
Q 015110 184 ALLNAGVLGLKSF-MCPSGINDFPMTNASHIKEGLSVLARYKRPLLV-HA-EMEKGSERHVK 242 (413)
Q Consensus 184 ~l~~~G~~~ik~~-~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~-H~-e~~~~~~~~~~ 242 (413)
.+.+.. ..+|+. ++| ... . .++++.++++|+.+.+ |. -+.+.+.+.+.
T Consensus 158 ~~~~~~-~~i~~iTlAP-------E~~-~--~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~ 208 (382)
T PRK11170 158 FLCENA-DVITKVTLAP-------EMV-D--AEVIRKLVEAGIVVSAGHSNATYEEAKAGFR 208 (382)
T ss_pred HHHhcc-CCEEEEEECC-------CCC-c--HHHHHHHHHCCcEEEeeCCcCCHHHHHHHHH
Confidence 666543 345543 222 222 1 2577788888988865 64 34444444443
No 102
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=99.57 E-value=4.3e-13 Score=133.68 Aligned_cols=88 Identities=23% Similarity=0.300 Sum_probs=66.0
Q ss_pred eEEEccEEEcCCCc---eeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCC-----Ccc
Q 015110 45 YWLTSKRIVTPKGV---ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT-----EWE 116 (413)
Q Consensus 45 lli~n~~vi~~~~~---~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~-----~~e 116 (413)
++|+|++|+++... ..++|.|+||+|++|++... .+.++||++|++|||||||+|+|+..+... ..+
T Consensus 2 ~iIkng~I~dp~~~~~~~~~dI~IedGkIveIg~~~~-----~~~eVIDa~G~vVmPGfID~HvHg~gG~~~~~R~~~pE 76 (556)
T TIGR03121 2 ILIKNGTVYDPANGIDGEVMDIFIRDGKIVEPVSGGT-----KPAKVIDASGKLVMAGGVDSHTHIAGPKVNVGRLLRPE 76 (556)
T ss_pred EEEEeEEEEcCCCCccccccEEEEECCEEEEecCCCC-----CCCeEEECCCCEEEeCEEeeeECCCccccccccccCHH
Confidence 57999999998643 24799999999999986432 135799999999999999999999864110 111
Q ss_pred c----------------------hHHHHHHHHhCCceEEEeCC
Q 015110 117 G----------------------FPSGTKAAAAGGITTLIDMP 137 (413)
Q Consensus 117 ~----------------------~~~~~~~al~~GvTTv~d~~ 137 (413)
+ .......+++.|+||++|..
T Consensus 77 ~~~~~~~~~~~~~r~Gtt~~lPTt~tt~y~ya~mGyTt~~eaa 119 (556)
T TIGR03121 77 DHRRDPEPRTGLTRAGSGFSVPSTYATGYRYARMGYTTVFEAA 119 (556)
T ss_pred HHhhcchhhhhhcCCCcceEehhHhHHHHHHHhCCccEEecCC
Confidence 1 12234567899999999986
No 103
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=99.57 E-value=3.9e-13 Score=133.32 Aligned_cols=236 Identities=20% Similarity=0.241 Sum_probs=135.7
Q ss_pred EEccEEEcCCCc---eeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCC-----Cccch
Q 015110 47 LTSKRIVTPKGV---ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT-----EWEGF 118 (413)
Q Consensus 47 i~n~~vi~~~~~---~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~-----~~e~~ 118 (413)
|+|++|+++.+. .+++|+|+||+|++|++.. ++.++||++|++|+|||||+|+|+...... .+|+.
T Consensus 1 Ikng~V~d~~~~~~~~~~dI~IedGkIv~Vg~~~------~~~~vID~~G~~VmPGfID~HtH~~gg~~~~~r~~~pe~~ 74 (541)
T cd01304 1 IKNGTVYDPLNGINGEKMDIFIRDGKIVESSSGA------KPAKVIDASGKVVMAGGVDMHSHIAGGKVNVGRILRPEDH 74 (541)
T ss_pred CEEEEEEcCCCcccccccEEEEECCEEEEEccCC------CCCeEEECCCCEEECCeeeeeeCccccccccccccChhhh
Confidence 579999998653 4689999999999998642 135799999999999999999998754211 11211
Q ss_pred H----------------------HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCC--
Q 015110 119 P----------------------SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-- 174 (413)
Q Consensus 119 ~----------------------~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 174 (413)
+ .......+-|.||+++.. .|+......-+ ....-+.+|-+.+.-+...
T Consensus 75 ~~~~~~~~~~~~~~~g~~~pst~~tgy~ya~mGytt~~e~a---~~p~~a~h~h~----e~~~~p~~d~~~~~~~gnn~~ 147 (541)
T cd01304 75 RRDPVPKGALRRAGVGFSVPSTLATGYRYAEMGYTTAFEAA---MPPLNARHTHE----EMADTPILDKGAYPLLGNNWF 147 (541)
T ss_pred hccccccccccccCCCccCCCchHhhhHHHhcCcceeeccc---CCcccchhhhH----HhccCccccccceEEecchHH
Confidence 1 112456788999999865 23322222212 2222334444322111100
Q ss_pred -----chhhHHHHHH----HHH-cCCcEEEEeecCCCC----------------CCCCCCCHHHHHHHHHHHHhcCCCEE
Q 015110 175 -----NAYNASALEA----LLN-AGVLGLKSFMCPSGI----------------NDFPMTNASHIKEGLSVLARYKRPLL 228 (413)
Q Consensus 175 -----~~~~~~~l~~----l~~-~G~~~ik~~~~~~~~----------------~~~~~~~~~~l~~~~~~A~~~g~~v~ 228 (413)
.....+.++. +++ ....++|+. .+.|. .++...+.+.++.+.+.+.++|+|..
T Consensus 148 ~~~~~~~~~~~~~~~~vaw~l~~tk~~giK~v-npgG~~a~~~~~~~~~~d~~~~~~~vtp~~ii~~l~~~~~~lg~ph~ 226 (541)
T cd01304 148 VLEYLRDGDMEKLAAYVAWTLKASKGYGIKVV-NPGGTEAWGWGQNVLSLDDPVPYFDITPREILKGLAEANEELGLPHS 226 (541)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccceEEEEE-CCCchhhhccCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCceE
Confidence 0011222332 233 356678874 23221 11223345667777888888998876
Q ss_pred EecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccC---C-------h
Q 015110 229 VHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS---D-------A 298 (413)
Q Consensus 229 ~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s---~-------~ 298 (413)
+|.+.... ..|--.| ...+.+++++..+...+ -..+|+.|+. + .
T Consensus 227 iH~h~nnl----------------------g~pgn~~--~t~~t~~~~~~~~~~~~--~~~~h~tH~qfhsyg~~~~~~~ 280 (541)
T cd01304 227 IHVHCNNL----------------------GVPGNYE--TTLETMKAAEGVKPDPR--RQVLHLTHVQFHSYGGTSWRDF 280 (541)
T ss_pred EEEccccC----------------------CCCCcHH--HHHHHHHHhhcCCCccc--cceeEeeeeeEEeeccCCcccH
Confidence 66543221 0111122 33556677764310000 0148999984 1 1
Q ss_pred hhHHHHHHHHHHCCCCEEEEcccc
Q 015110 299 SSSLDLLMEAKTNGDSITVETCPH 322 (413)
Q Consensus 299 ~~~~~~i~~ak~~G~~v~~e~~p~ 322 (413)
....+.|.++.+++-+|++|+.+.
T Consensus 281 ~s~a~~i~~~~n~~~~it~D~G~v 304 (541)
T cd01304 281 ESGAERIADYVNANDHVTIDVGQV 304 (541)
T ss_pred hHHHHHHHHHHHcCCCEEEEeCce
Confidence 255788888999999999998774
No 104
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=99.56 E-value=2.4e-13 Score=126.45 Aligned_cols=172 Identities=24% Similarity=0.330 Sum_probs=130.7
Q ss_pred CcceEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCC-------CCCCcEEecCCCEEeeeeeecccccCCCCCCC
Q 015110 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRN-------SKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE 114 (413)
Q Consensus 42 ~~~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~-------~~~~~vID~~G~~vlPGlID~H~H~~~~~~~~ 114 (413)
..+++|.|+.|+|-.++..+||.|+||||++||+...+.-. .+..++|-+.|++|.-|-||+|+|+-.|
T Consensus 66 ~~D~VITNa~IiD~~Gi~KADiGikdGrI~~IGKaGNPd~~dgV~iiiG~sTe~iagEg~I~TAGGiDtHiHfI~P---- 141 (568)
T COG0804 66 ALDLVITNALIIDYWGIVKADIGIKDGRIAGIGKAGNPDIMDGVTIIIGPSTEIIAGEGKIVTAGGIDTHIHFICP---- 141 (568)
T ss_pred cccEEEeeeEEEeccceEEeecccccceEEEeecCCCCCccCCceEEeccccceecCCceEEeeccccceeEEecH----
Confidence 36899999999999999999999999999999975432111 1356789999999999999999998754
Q ss_pred ccchHHHHHHHHhCCceEEEeCCCCCCCCC--------CcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHH
Q 015110 115 WEGFPSGTKAAAAGGITTLIDMPLNSDPST--------ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL 186 (413)
Q Consensus 115 ~e~~~~~~~~al~~GvTTv~d~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 186 (413)
.....||.+||||++..+ +.|.. ..+-.+...++.+.+ ..+|++|.+ ..+......+.+.+
T Consensus 142 -----qqi~~Al~sGiTtmiGGG--tGpa~Gt~aTT~TpG~w~i~rMl~a~d~-~p~N~g~lg---KGn~s~~~~L~Eqi 210 (568)
T COG0804 142 -----QQIEEALASGITTMIGGG--TGPADGTNATTCTPGPWHIARMLQAADG-LPMNIGFLG---KGNASNPAPLAEQI 210 (568)
T ss_pred -----HHHHHHHhcCcEEEecCc--cCCCCCcccccccCCHHHHHHHHHhhhc-CceeeEEee---cCCCCCchhHHHHH
Confidence 356789999999998764 22211 122345555555543 457888754 33444456788999
Q ss_pred HcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChh
Q 015110 187 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK 235 (413)
Q Consensus 187 ~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~ 235 (413)
++|+.++|+.-. .-.++..+..++..|.++++.|.+|.....
T Consensus 211 ~aGa~GlKlHED-------WG~TpaaI~~~L~VAD~~DvqVaiHtDTLN 252 (568)
T COG0804 211 EAGAIGLKLHED-------WGATPAAIDTCLSVADEYDVQVAIHTDTLN 252 (568)
T ss_pred hhccceeEeecc-------cCCCHHHHHHHHhhhhhhceEEEEeecccc
Confidence 999999998532 235788999999999999999999987654
No 105
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.54 E-value=4.5e-13 Score=121.70 Aligned_cols=150 Identities=25% Similarity=0.295 Sum_probs=95.7
Q ss_pred eEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCC-----Ccc---
Q 015110 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT-----EWE--- 116 (413)
Q Consensus 45 lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~-----~~e--- 116 (413)
++|.|++|+..+.+.++.|+|+||+|..|.+.... ...-+|+.|.+++|||||.|+-.-+.... .|.
T Consensus 1 ~~lsnarivl~D~v~~gsv~i~DG~Ia~i~~g~s~-----~~~~~d~eGd~LLPGlIeLHtD~lE~~~~PRPgV~wp~~a 75 (377)
T COG3454 1 MILSNARIVLEDRVVNGSVLIRDGLIADIDEGISP-----LAAGIDGEGDYLLPGLIELHTDNLERFMTPRPGVRWPPIA 75 (377)
T ss_pred CccccceEEeecceeeeeEEEecceEeeeccccCc-----ccccccCCCCeecccchhhcchhhhcccCCCCCCCCCchH
Confidence 36889999999999899999999999999876532 23569999999999999999954322111 121
Q ss_pred chHHHHHHHHhCCceEEEeCCC--CCCCCCCcHHHHHHHHHHH-----hcCCeeeEEeeceecCCchhhHHHHHHHHHcC
Q 015110 117 GFPSGTKAAAAGGITTLIDMPL--NSDPSTISTETLKLKVDAA-----EKRIYVDVGFWGGLVPENAYNASALEALLNAG 189 (413)
Q Consensus 117 ~~~~~~~~al~~GvTTv~d~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G 189 (413)
.+...-+..+.+||||++|.-. .........+.+...++.. ++....+-.++....-.....++.++++...+
T Consensus 76 Ai~ahD~~l~~sGITTv~dal~iGd~~~gg~r~~~~~~midaI~~~~~~g~lradHr~HlRcEvs~~~~l~~~e~~~~~p 155 (377)
T COG3454 76 AILAHDAQLAASGITTVLDALAIGDVRDGGLRLENLRKMIDAIEEAQAAGRLRADHRLHLRCEVSHPATLPLFEDLMDHP 155 (377)
T ss_pred HHHHhhHHHHhcChhhHHhhhhcCcccCCccchHHHHHHHHHHHHHHhccchhhccceeeeeecCChhHHHHHHHHhcCC
Confidence 2223446678999999998631 1112222223444433332 22233444455444444455677888888877
Q ss_pred CcEEEEeecC
Q 015110 190 VLGLKSFMCP 199 (413)
Q Consensus 190 ~~~ik~~~~~ 199 (413)
...+...|..
T Consensus 156 ~v~LiSlMDH 165 (377)
T COG3454 156 RVKLISLMDH 165 (377)
T ss_pred CeeEEEecCC
Confidence 6655445544
No 106
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=99.48 E-value=8.4e-13 Score=122.87 Aligned_cols=212 Identities=25% Similarity=0.321 Sum_probs=123.8
Q ss_pred eeecccccCCCCCCC------------------ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 015110 100 LIDVHAHLDDPGRTE------------------WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI 161 (413)
Q Consensus 100 lID~H~H~~~~~~~~------------------~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (413)
|||+|+|+..+.... ..........++++||||++++. +..+.....+.+....+......
T Consensus 1 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMG-STPPPTTTKAAIEAVAEAARASA 79 (275)
T ss_pred CcccchhhHHHHHccCCCccccccccccCHHHHHHHHHHHHHHHHhcCceEEEeeE-eecCccccchHHHHHHHHHHHhc
Confidence 799999987653221 12234567788999999999987 33332222233444444333221
Q ss_pred eeeEEeeceecCCc--------hhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015110 162 YVDVGFWGGLVPEN--------AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (413)
Q Consensus 162 ~~~~~~~~~~~~~~--------~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~ 233 (413)
.+...+.....+.. ....+.+.+..+.|+.+++.+..... ...+.+.++++++.|+++|+++.+|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~i~~H~~~ 155 (275)
T cd01292 80 GIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGLKLAGPYTA----TGLSDESLRRVLEEARKLGLPVVIHAGE 155 (275)
T ss_pred CeeeEEeccCCCCccccchhHHHHHHHHHHHHHhcCCeeEeeCCCCCC----CCCCcHHHHHHHHHHHHcCCeEEEeeCC
Confidence 22333222222111 11233344444457888887643321 1147889999999999999999999865
Q ss_pred hhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCC
Q 015110 234 EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGD 313 (413)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~ 313 (413)
.... ...+.++++.... +.++.+.|+... .-+.++..++.|
T Consensus 156 ~~~~----------------------------~~~~~~~~~~~~~--------~~~~~~~H~~~~--~~~~~~~~~~~g- 196 (275)
T cd01292 156 LPDP----------------------------TRALEDLVALLRL--------GGRVVIGHVSHL--DPELLELLKEAG- 196 (275)
T ss_pred cccC----------------------------ccCHHHHHHHHhc--------CCCEEEECCccC--CHHHHHHHHHcC-
Confidence 4310 0123344444331 467899999873 123344445554
Q ss_pred CEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEEcCCCCCC
Q 015110 314 SITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 372 (413)
Q Consensus 314 ~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p~ 372 (413)
+.+++||++..+.. +....+..+++.++.|..++++||+.+.
T Consensus 197 -~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~g~~~~lgTD~~~~ 238 (275)
T cd01292 197 -VSLEVCPLSNYLLG----------------RDGEGAEALRRLLELGIRVTLGTDGPPH 238 (275)
T ss_pred -CeEEECCccccccc----------------CCcCCcccHHHHHHCCCcEEEecCCCCC
Confidence 67778997554321 1223445567778889999999999764
No 107
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=99.45 E-value=1.1e-11 Score=123.25 Aligned_cols=136 Identities=23% Similarity=0.316 Sum_probs=98.9
Q ss_pred ecCCCEEeeeeeecccccCCCCCCCccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeec
Q 015110 90 DYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 169 (413)
Q Consensus 90 D~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (413)
|++|++|+|||||+|+|+..+... ....++.++.+||||++++| +..+.....+.++..++..+ +..+++.+..
T Consensus 1 Da~G~~v~PG~ID~H~Hi~~~~~~----~~~~~~~a~~~GvTtvv~~p-~~~~~v~g~~~~~~~~~~a~-~~p~~~~~~~ 74 (422)
T cd01295 1 DAEGKYIVPGFIDAHLHIESSMLT----PSEFAKAVLPHGTTTVIADP-HEIANVAGVDGIEFMLEDAK-KTPLDIFWML 74 (422)
T ss_pred CCCCCEEccCEEEccCCcCCCCCC----hHHHHHHHHCCCcEEEEeCC-CCCCcCCCHHHHHHHHHHHh-CCCceEEEeC
Confidence 789999999999999999876542 24467899999999999998 55566677788887777543 3344554333
Q ss_pred ee-cCCch-----h--hHHHHHHHHH-cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChh
Q 015110 170 GL-VPENA-----Y--NASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK 235 (413)
Q Consensus 170 ~~-~~~~~-----~--~~~~l~~l~~-~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~ 235 (413)
.. .+... . ..++++++.+ .++.+++.+|.+.+. ..+++.+.+.++.|+++|+++.+|+....
T Consensus 75 p~~vp~t~~e~~g~~~~~~~i~~l~~~~~vvglgE~md~~~v----~~~~~~l~~~i~~A~~~g~~v~~Ha~g~~ 145 (422)
T cd01295 75 PSCVPATPFETSGAELTAEDIKELLEHPEVVGLGEVMDFPGV----IEGDDEMLAKIQAAKKAGKPVDGHAPGLS 145 (422)
T ss_pred CCcCCCCCCCCCCCcCCHHHHHHHhcCCCCcEEEEeccCccc----cCCcHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 22 11000 1 3677888877 499999988765421 24667899999999999999999986543
No 108
>KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.36 E-value=1.1e-11 Score=116.82 Aligned_cols=255 Identities=20% Similarity=0.182 Sum_probs=131.0
Q ss_pred eeEEEEEC-CEEEEcccCCCCCC-------CCCCCcEEecCCCEEeeeeeecccccCC----C--CC-------------
Q 015110 60 SGAVEIKE-GNIISIVSEEDWPR-------NSKTGQVVDYGEAVIMPGLIDVHAHLDD----P--GR------------- 112 (413)
Q Consensus 60 ~~~V~I~d-G~I~~Ig~~~~~~~-------~~~~~~vID~~G~~vlPGlID~H~H~~~----~--~~------------- 112 (413)
+..+.|.| |+|+.|++....+. ..+..++++.+|.++||||||+|+|... . +.
T Consensus 27 ~~sl~Vd~~GKi~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~mPGfVdtH~H~a~q~~~s~~g~d~pll~wl~~~~f 106 (439)
T KOG3968|consen 27 GSSLGVDDTGKIVFIGKAYFDENKLKGEGVEKENTKIKLSSGHFLMPGFVDTHIHPAHQFAMSGAGTDMPLLQWLGKYTF 106 (439)
T ss_pred CcceeecCCccEEEeeccccchhhhcccccccccceeeecCCcEEecceeecccchHhhhhhhccccCcHHHHHhhccee
Confidence 45668877 99999997542220 0134578999999999999999999321 0 10
Q ss_pred ------CCccc----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEe--ece-ecC----Cc
Q 015110 113 ------TEWEG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF--WGG-LVP----EN 175 (413)
Q Consensus 113 ------~~~e~----~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~----~~ 175 (413)
...|+ +....+.++++|+||+.-+.. .- ..+...+.+.......+..+.... ..+ ..+ ..
T Consensus 107 ~le~~~~~~e~~~q~~~~vv~~mL~~GTTt~~~f~~--~~-~~s~~ll~~~~~~~G~R~~igkv~m~~~~~~~p~~~~~~ 183 (439)
T KOG3968|consen 107 PLEATFTNEEDARQVYQRVVKEMLRAGTTTVEYFST--LH-LDSELLLARAAIRAGQRALIGKVCMDCNAHAVPKGVETT 183 (439)
T ss_pred ecchhhhhHHHHHHHHHHHHHHHHHcCceehhhhhc--cC-chhHHHHHHHHHHhCCceeeeeehhccCCCCCCccchhH
Confidence 00011 224467889999999986641 11 111111211111111122211110 000 011 11
Q ss_pred hhhHHHHHHH-------HHcCCcEE-EEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec-CChhhchhhHhhccC
Q 015110 176 AYNASALEAL-------LNAGVLGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA-EMEKGSERHVKLEDD 246 (413)
Q Consensus 176 ~~~~~~l~~l-------~~~G~~~i-k~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~~~~~~ 246 (413)
.+.++..+++ .+.+...+ ... -.+.++.+.+...-+.|+.+++++..|. |+.+++.....-...
T Consensus 184 E~si~~t~~~i~~~~~~~~~~~~~~vt~~-------fa~~c~k~v~~~l~~lak~~~l~~q~hIsen~~EI~~~~~ff~~ 256 (439)
T KOG3968|consen 184 EESIESTEDLIPKLEKLKREKVNPIVTPR-------FAASCSKGVFEELSKLAKYHNLHIQIHISENGKEIEAVKNFFPE 256 (439)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCccccc-------ccCCCcchhHHHHHHHHHhhhhhhhhhhhhcHHHHHHHHHhhhh
Confidence 1122222222 22232222 111 1245677788888889999999999995 776665422221110
Q ss_pred cCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEcccc-ccc
Q 015110 247 TLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPH-YLA 325 (413)
Q Consensus 247 ~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~-~l~ 325 (413)
+. . .+ ......-.+..+ -+-.|.+|++. +.++++++ +|..|. .||- ...
T Consensus 257 ~~---~-------y~-----~~yd~~~lL~~k--------tvlaH~~hl~d--~ei~~l~k---~g~svs--hCP~Sn~~ 306 (439)
T KOG3968|consen 257 KL---S-------YT-----DVYDKGGLLTEK--------TVLAHLEHLSD--EEIELLAK---RGCSVS--HCPTSNSI 306 (439)
T ss_pred cc---c-------ch-----HHHHHhcccchH--------hHhhhheecCc--hhHHHHHh---cCCceE--ECCcchhh
Confidence 00 0 00 111111112211 13368999988 45666555 455554 7884 111
Q ss_pred cccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEEcCCCCCCCh
Q 015110 326 FSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVP 374 (413)
Q Consensus 326 l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p~~~ 374 (413)
|. .| .| .+.+.|..|++..+|||-++++.
T Consensus 307 L~------sG-----~~---------~vr~lL~~~v~VgLGtDv~~~s~ 335 (439)
T KOG3968|consen 307 LG------SG-----IP---------RVRELLDIGVIVGLGTDVSGCSI 335 (439)
T ss_pred hc------cC-----Cc---------cHHHHHhcCceEeecCCcccccc
Confidence 11 01 12 23455777999999999997653
No 109
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=6.5e-11 Score=112.06 Aligned_cols=87 Identities=31% Similarity=0.542 Sum_probs=71.5
Q ss_pred eEEEccEEEcCCCce-eeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCC-C---CccchH
Q 015110 45 YWLTSKRIVTPKGVI-SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR-T---EWEGFP 119 (413)
Q Consensus 45 lli~n~~vi~~~~~~-~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-~---~~e~~~ 119 (413)
.+++|++|+++.++. ++.|.|+||+|.+|.+ .+.+ .+.++||.+|.+|+|||||+|+|...+.. . +.+.+.
T Consensus 2 ~~~~~~~i~t~~~~~~~~~v~i~dg~I~~i~~-~~~p---~~~e~id~~G~~l~PGfID~hihG~gG~~~~D~~~~~~l~ 77 (380)
T COG1820 2 YALKNGRIFTGHGVLDGGAVVIEDGKIEAVVP-AELP---ADAEIIDLKGALLVPGFIDLHIHGGGGADFMDAGSVETLE 77 (380)
T ss_pred ceeeccEEEcCcceEECcEEEEcCCEEEEEec-CcCC---CcceeecCCCCEecccEEEEeecCcCcccccCccCHHHHH
Confidence 468999999999976 4599999999999998 2232 47789999999999999999999876532 2 335567
Q ss_pred HHHHHHHhCCceEEEe
Q 015110 120 SGTKAAAAGGITTLID 135 (413)
Q Consensus 120 ~~~~~al~~GvTTv~d 135 (413)
..++..++.|||+++-
T Consensus 78 ~i~~~~~~~GtTsfLp 93 (380)
T COG1820 78 TMAEAHLRHGTTSFLP 93 (380)
T ss_pred HHHHHhhhcCeeeeee
Confidence 7788889999999974
No 110
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.32 E-value=7.6e-11 Score=114.76 Aligned_cols=68 Identities=34% Similarity=0.488 Sum_probs=51.5
Q ss_pred CCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCC----------Cc-------------cchHHHHH
Q 015110 67 EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT----------EW-------------EGFPSGTK 123 (413)
Q Consensus 67 dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~----------~~-------------e~~~~~~~ 123 (413)
||||++|++....+ .+.++||++|++|+|||||+|+|++..... .. ........
T Consensus 1 ~gkI~~i~~~~~~~---~~~~vid~~g~~v~Pg~id~h~h~~~~~~~~~~~~~d~~e~~~~~~p~~~~~d~~~~~~~~~~ 77 (359)
T cd01309 1 DGKIVAVGAEITTP---ADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDANEETDPVTPHVRAIDGINPDDEAFK 77 (359)
T ss_pred CCEEEEEcCCCCCC---CCCeEEeCCCCEEcCcEEecccccCccccCCCcCcCCccccCCCCCceeEeecccCCCCHhHH
Confidence 79999999865433 367899999999999999999999754210 00 01124567
Q ss_pred HHHhCCceEEEeCC
Q 015110 124 AAAAGGITTLIDMP 137 (413)
Q Consensus 124 ~al~~GvTTv~d~~ 137 (413)
.+.++|||++...|
T Consensus 78 ~a~~~GvT~~~v~p 91 (359)
T cd01309 78 RARAGGVTTVQVLP 91 (359)
T ss_pred HHHhcCceEEEecC
Confidence 88999999998887
No 111
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=99.27 E-value=4.5e-11 Score=112.56 Aligned_cols=239 Identities=26% Similarity=0.279 Sum_probs=122.7
Q ss_pred ecCCCEEeeeeeecccc--cCCCC--CCCccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeE
Q 015110 90 DYGEAVIMPGLIDVHAH--LDDPG--RTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV 165 (413)
Q Consensus 90 D~~G~~vlPGlID~H~H--~~~~~--~~~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (413)
|++|++|+|||||+|+| ..... ....+......+.++.+|+||+++++ +. ....+...... ....
T Consensus 1 D~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~tt~~~~~-~~-----~~~~~~~~~~~-----~~~~ 69 (304)
T PF13147_consen 1 DASGKYVLPGLIDLHVHGPLGRSEDGAPWAEQAAAASAAALAGGVTTVVDMP-GT-----NPEELNRARRR-----GAGY 69 (304)
T ss_dssp E-TTSEEEE-EEEEEEECCSSCETTTEEHSSHHHHHHHHHHHTTEEEEEESS-SS-----SHHHHHHHHHH-----ESEE
T ss_pred CCCCCEEccceeeeeeCCCcCCCCCCccchhhHHHHHHHHHhCCEeEEecCC-CC-----CchhhHHHHhh-----cccc
Confidence 89999999999999999 22211 11223344677888999999999865 22 12222222222 1111
Q ss_pred EeeceecCCchhh---HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC-CEEEecCChhhchhhH
Q 015110 166 GFWGGLVPENAYN---ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKR-PLLVHAEMEKGSERHV 241 (413)
Q Consensus 166 ~~~~~~~~~~~~~---~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~-~v~~H~e~~~~~~~~~ 241 (413)
..... ...... .+.+..........+ .... .......+...++.+++.+. .+..|+... ......
T Consensus 70 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 138 (304)
T PF13147_consen 70 PGSGA--GPRGTTIEELEALVDLIAAEGVGF--VAAY------NGIEGPGLQAAIRAAHRAGVIKVVGHSPAD-GIEGAI 138 (304)
T ss_dssp EEECE--SCCHHHHHHHHHHHHHHHHTEEEE--ESSS------THHHHHHHHHHHHHHHHHTHEEEEEECHHH-HHHHHH
T ss_pred ccccc--cccccchHHHHHHHHHHhhcCcce--eecc------ccCCHHHHHHHHHHHHhcCCeeeecccchh-hHHHHH
Confidence 21111 111122 233333333333332 2211 13456788888889999994 444455433 211111
Q ss_pred hhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccc
Q 015110 242 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCP 321 (413)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p 321 (413)
.... .. ..+. ..+...+...+........ +..+++...... ...+.+...+..++..++..
T Consensus 139 ~~~~-----~~-~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-- 199 (304)
T PF13147_consen 139 AEGL-----DA-MEHI-LPHEVAEALHLAEALAQGA---------GPGLHCHVASDD-ATAEGVAIAHGFGLPPTPLH-- 199 (304)
T ss_dssp HHHH-----HT-THHS-THHHHHHHHHHHHHHHHHH---------THCEEEEETSSH-HHHHHHHHHHHTTHEEEEEE--
T ss_pred Hhcc-----cc-hhhh-hhhhHHHHHHHHHHhhhcc---------ccchhhhhhhhh-hhhHHHHHHHhhccccchHH--
Confidence 1110 00 0000 1111222223332222221 445555555554 33332555555665554433
Q ss_pred cccccccccCCCCCcceEEcCCCC--ChhcHHHHHHHHhcCCccEEcCCCCCCC
Q 015110 322 HYLAFSAEEIPDGDTRFKCAPPIR--DAANKEKLWEALMDGHIDMLSSDHSPTV 373 (413)
Q Consensus 322 ~~l~l~~~~~~~~~~~~k~~Pplr--~~~~~~~L~~~l~~G~i~~i~sDh~p~~ 373 (413)
.+.-....+ +..++++||++ ....+..+++.++.|+.++++|||.|+.
T Consensus 200 -~~~~~~~~~---~~~~~~~p~~~~~~~~~~~~~~~l~~~Gv~~~l~sD~~~~~ 249 (304)
T PF13147_consen 200 -LLARDAAAA---GIRFKVLPPLRLDLREDRAALRELLEAGVPVALGSDHAPSS 249 (304)
T ss_dssp -HHHHHHHHH---GGGGEESSCHHHHTHHHHHHHHHHHHTTSSEEEEE-BBTTT
T ss_pred -hhHHHHHhc---CceeeeCCCccccchhhhHHHHHHHhCCCeEEEEcCCcccc
Confidence 111111111 46789999998 8999999999999999999999999864
No 112
>PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria.
Probab=99.25 E-value=6.5e-12 Score=99.67 Aligned_cols=140 Identities=26% Similarity=0.393 Sum_probs=95.2
Q ss_pred CCEEeeeeeecccccCCCCCCCccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceec
Q 015110 93 EAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV 172 (413)
Q Consensus 93 G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (413)
|++++|||||.|+|++.++....+.+. ||+..|| |++|.. ..+.+.
T Consensus 1 ~kli~~g~vd~hVhlrepg~~~keti~-----------tT~~amp-nt~paP----------------a~itv~------ 46 (142)
T PF12890_consen 1 GKLILPGLVDVHVHLREPGFEAKETIE-----------TTWCAMP-NTFPAP----------------AGITVE------ 46 (142)
T ss_pred Cceeehhhhhhhhhhhcccchhhhhhh-----------ceeeecC-ccCCCC----------------cceeee------
Confidence 689999999999999999876555443 3899999 777754 011111
Q ss_pred CCchhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccc
Q 015110 173 PENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 252 (413)
Q Consensus 173 ~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~ 252 (413)
... -.++.+ +. ++........+.+.++. ++++.++..||++.+.+.++.+..++ -+..
T Consensus 47 ~~~--------------~e~~af--sd---dg~giq~~~lm~eamk~-a~l~~~i~ahceDd~l~~~g~v~~ge--~~q~ 104 (142)
T PF12890_consen 47 DDG--------------EEAFAF--SD---DGYGIQIQLLMYEAMKK-AELDQEIVAHCEDDELTNGGVVHDGE--LPQF 104 (142)
T ss_pred ecC--------------cceEEE--ec---CCceeeeHHHHHHHHHH-HHcccHHHHhhcccccccccccccch--hhHH
Confidence 000 002211 11 12233456678888888 88999999999999988777665541 1122
Q ss_pred cccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCCh
Q 015110 253 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 298 (413)
Q Consensus 253 ~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~ 298 (413)
+..++++ .+|...+.+.+.+++.+ |+..||+|+|+.
T Consensus 105 ~g~~L~G---~cEs~~~~rd~lLak~~-------g~~yhVchvstk 140 (142)
T PF12890_consen 105 LGVYLKG---NCESVQCARDVLLAKAT-------GCHYHVCHVSTK 140 (142)
T ss_pred hCCcCCC---cchHHHHHHHHHhhhcc-------CCcEEEEEEecc
Confidence 2222333 78999999999999975 999999999986
No 113
>PRK06886 hypothetical protein; Validated
Probab=99.08 E-value=1.3e-08 Score=96.98 Aligned_cols=200 Identities=12% Similarity=0.112 Sum_probs=107.8
Q ss_pred HHHHHHHhCCceEEEeCCCCCCC--CCCcHHHHHHHHHHHhcCCeeeEE-ee-ceecCCchhhHHHHHHHHHcCCcEEEE
Q 015110 120 SGTKAAAAGGITTLIDMPLNSDP--STISTETLKLKVDAAEKRIYVDVG-FW-GGLVPENAYNASALEALLNAGVLGLKS 195 (413)
Q Consensus 120 ~~~~~al~~GvTTv~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~l~~~G~~~ik~ 195 (413)
...+.++.+|+|.++.+. +..| .....+.+.+.++..+....+.+. |. -++.. +...+.+++..+. ++.+.-
T Consensus 73 ~~l~~~~~~Gtt~iRtHv-dvd~~~~l~~~~a~~~~r~~~~~~idlq~vafPq~g~~~--~~~~~l~~~al~~-advvGG 148 (329)
T PRK06886 73 QAIELMISQGVTAFGTFV-DIDPICEDRAIIAAHKAREVYKHDIILKFANQTLKGVIE--PTAKKWFDIGSEM-VDMIGG 148 (329)
T ss_pred HHHHHHHHcCcccEeeee-ccCCCccccHHHHHHHHHHHhcCcceEEEEecChhhccC--ccHHHHHHHHHHh-CCEEeC
Confidence 345667899999999987 4444 234456666666655544333321 21 11221 2223445554443 322211
Q ss_pred eecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHH
Q 015110 196 FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 275 (413)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~ 275 (413)
. +.........+.+.+..+++.|+++|+++.+|+.+..... ...+..+.+.
T Consensus 149 i--P~~~~~~~~~~~e~l~~~~~lA~~~g~~Id~Hlde~~~~~---------------------------~~~le~l~~~ 199 (329)
T PRK06886 149 L--PYRDELDYGRGLEAMDILLDTAKSLGKMVHVHVDQFNTPK---------------------------EKETEQLCDK 199 (329)
T ss_pred c--cCCcCCCCCCCHHHHHHHHHHHHHcCCCeEEeECCCCchh---------------------------HHHHHHHHHH
Confidence 1 1100001134678999999999999999999985432100 1123333333
Q ss_pred HhhcccCCCCCCceEEEEccCCh-----hhHHHHHHHHHHCCCCEEEEcccc-ccccccccCCCCCcceEEcCCCCChhc
Q 015110 276 AKDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCPH-YLAFSAEEIPDGDTRFKCAPPIRDAAN 349 (413)
Q Consensus 276 a~~~~~~~~~~g~~vhi~H~s~~-----~~~~~~i~~ak~~G~~v~~e~~p~-~l~l~~~~~~~~~~~~k~~Pplr~~~~ 349 (413)
..+.|+ +.|+.++|++.. .+..++++..++.|+.|. +||. +|.++... + ..|.-|.-..
T Consensus 200 ~~~~Gl-----~grV~~sH~~~L~~~~~~~~~~~i~~La~agi~Vv--~~P~snl~l~~~~----~----~~p~~rGv~p 264 (329)
T PRK06886 200 TIEHGM-----QGRVVAIHGISIGAHSKEYRYRLYQKMREADMMVI--ACPMAWIDSNRKE----D----LMPFHNALTP 264 (329)
T ss_pred HHHcCC-----CCCEEEEEeccccCcChhhHHHHHHHHHHcCCeEE--ECchhhhhhcccc----c----cCcCCCCCCC
Confidence 334432 347899998753 123456777777777665 6885 33333110 0 0111122233
Q ss_pred HHHHHHHHhcCCccEEcCCCC
Q 015110 350 KEKLWEALMDGHIDMLSSDHS 370 (413)
Q Consensus 350 ~~~L~~~l~~G~i~~i~sDh~ 370 (413)
...| ++.|+..++|||..
T Consensus 265 v~eL---~~aGV~V~lGtDnv 282 (329)
T PRK06886 265 ADEM---IPEGITVALGTDNI 282 (329)
T ss_pred HHHH---HHCCCeEEEecCCC
Confidence 3444 55599999999985
No 114
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=99.00 E-value=5.5e-09 Score=97.39 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCCEEEecCC
Q 015110 213 IKEGLSVLARYKRPLLVHAEM 233 (413)
Q Consensus 213 l~~~~~~A~~~g~~v~~H~e~ 233 (413)
++++++.|+++|+++.+|+..
T Consensus 127 l~~~~~~A~~~g~~v~~H~~e 147 (263)
T cd01305 127 LEDILELLRRRGKLFAIHASE 147 (263)
T ss_pred HHHHHHHHHHCCCeeEEecCC
Confidence 999999999999999999853
No 115
>COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion]
Probab=98.99 E-value=8.6e-09 Score=96.60 Aligned_cols=64 Identities=19% Similarity=0.350 Sum_probs=52.3
Q ss_pred CcceEEEccEEEcCCCc---eeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCC
Q 015110 42 YNQYWLTSKRIVTPKGV---ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110 (413)
Q Consensus 42 ~~~lli~n~~vi~~~~~---~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~ 110 (413)
++.++|+||.|+|+-.. ...||.|+||||++-..-.+ ...+|||++|++||||-||+|.|...+
T Consensus 2 ~~e~~IKNg~V~dPlngingE~MDI~vkdGKIVe~sev~~-----~~aKVIDA~gklvm~GGvD~HsHvAG~ 68 (575)
T COG1229 2 AMEILIKNGIVYDPLNGINGEKMDICVKDGKIVEESEVSE-----SKAKVIDASGKLVMPGGVDSHSHVAGA 68 (575)
T ss_pred CceEEeecCEEecCccCCCCceeeEEeecCeEeeeccccc-----ccceEEeccCcEEecCccccccccccc
Confidence 35789999999999753 36799999999997543221 246899999999999999999999764
No 116
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=98.95 E-value=6e-08 Score=92.28 Aligned_cols=212 Identities=20% Similarity=0.212 Sum_probs=113.8
Q ss_pred eeeeeecccccCCCCCC-----Cc---cchHHHHHHHHhCCceEEEeCCCCC-CCCC-CcHHHHHHHHHHH---h--cCC
Q 015110 97 MPGLIDVHAHLDDPGRT-----EW---EGFPSGTKAAAAGGITTLIDMPLNS-DPST-ISTETLKLKVDAA---E--KRI 161 (413)
Q Consensus 97 lPGlID~H~H~~~~~~~-----~~---e~~~~~~~~al~~GvTTv~d~~~~~-~~~~-~~~~~~~~~~~~~---~--~~~ 161 (413)
+|||||.|+-..+.-.. .| ..+...-++.+++||||+++.-+.. .... ...+......+.. . +..
T Consensus 1 lPG~vdlH~D~~E~~~~PRp~v~~~~~~a~~~~d~~~~a~GiTT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (325)
T cd01306 1 LPGLIDLHTDNLEKHVMPRPGVDWPMDIALAAHDRQLAAAGITTVFDALSFGDEEGGRRRLRNLRKLIDAIRELHARGVL 80 (325)
T ss_pred CCCeEEecCcchhcccCCCCCCCCCHHHHHHHHHHHHHhcCcccceeeeEeccccCCcccHHHHHHHHHHHHHhhhCCcc
Confidence 69999999965432111 11 1233445677899999999864211 1212 2333333333222 2 223
Q ss_pred eeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecCCCCCC---------------------------------CCCC
Q 015110 162 YVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND---------------------------------FPMT 208 (413)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~---------------------------------~~~~ 208 (413)
.++-.++....-...+..+.+..+++.+-..+-.+|....... ....
T Consensus 81 ~~d~~~hlR~E~~~~~~~~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (325)
T cd01306 81 RADHRLHLRCELADPAVLPELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAY 160 (325)
T ss_pred hhhcceEEEEeecCccHHHHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Confidence 3444444444334445667777777766555555554321100 0123
Q ss_pred CHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCc
Q 015110 209 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 288 (413)
Q Consensus 209 ~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~ 288 (413)
+.++++++++.|+++|+++.+|+.... ..+.+..+. |+
T Consensus 161 ~~~~~~~iv~~A~~~gl~vasH~d~~~-------------------------------~~v~~a~~~-----------Gv 198 (325)
T cd01306 161 APANRSELAALARARGIPLASHDDDTP-------------------------------EHVAEAHEL-----------GV 198 (325)
T ss_pred CHHHHHHHHHHHHHCCCcEEEecCCCh-------------------------------HHHHHHHHC-----------CC
Confidence 456777778888888888888874321 022222221 33
Q ss_pred eEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEEcCC
Q 015110 289 HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSD 368 (413)
Q Consensus 289 ~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sD 368 (413)
. .+.|..+ .+.++.++++|+.|.+. .|. +.. .+ +......+++.++.|+.++++||
T Consensus 199 ~-~~E~p~t----~e~a~~a~~~G~~vv~g-apn-~lr-------g~----------s~~g~~~~~~ll~~Gv~~al~SD 254 (325)
T cd01306 199 V-ISEFPTT----LEAAKAARELGLQTLMG-APN-VVR-------GG----------SHSGNVSARELAAHGLLDILSSD 254 (325)
T ss_pred e-eccCCCC----HHHHHHHHHCCCEEEec-Ccc-ccc-------Cc----------cccccHhHHHHHHCCCeEEEEcC
Confidence 3 2345444 34556677777776642 221 110 01 11123457888899999999999
Q ss_pred CCCCCh
Q 015110 369 HSPTVP 374 (413)
Q Consensus 369 h~p~~~ 374 (413)
|.|.+.
T Consensus 255 ~~p~sl 260 (325)
T cd01306 255 YVPASL 260 (325)
T ss_pred CCcHhH
Confidence 988653
No 117
>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []. The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....
Probab=98.45 E-value=2.1e-07 Score=89.45 Aligned_cols=43 Identities=47% Similarity=0.821 Sum_probs=35.5
Q ss_pred EEeeeeeecccccCCCCCC-------CccchHHHHHHHHhCCceEEEeCC
Q 015110 95 VIMPGLIDVHAHLDDPGRT-------EWEGFPSGTKAAAAGGITTLIDMP 137 (413)
Q Consensus 95 ~vlPGlID~H~H~~~~~~~-------~~e~~~~~~~~al~~GvTTv~d~~ 137 (413)
+|+|||||+|+|+..+... ..+.+...++.++++||||+++++
T Consensus 1 ~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~ 50 (333)
T PF01979_consen 1 YVMPGLIDAHVHGGQGGLRGLLDPEDHYESIRTGAKAALKGGVTTVLDTP 50 (333)
T ss_dssp EEEE-EEEEEEEGGGTTHTTSSSHHHHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CEEcChhHHhhCcCCcCccccCCHHHHHHHHHHHHHHHHhcCeEEEEcCc
Confidence 6999999999999987655 344566788999999999999996
No 118
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=98.30 E-value=4.5e-05 Score=70.27 Aligned_cols=123 Identities=20% Similarity=0.187 Sum_probs=67.1
Q ss_pred eeecccccCCCCCCCccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCc----
Q 015110 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN---- 175 (413)
Q Consensus 100 lID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 175 (413)
++|+|+|+...... .+.....+.+...||++++.+.. . .+..+...+.+.... ++....++.+..
T Consensus 1 ~~D~H~H~~~~~~~--~~~~~~l~~~~~~gv~~~v~~~~---~----~~~~~~~~~la~~~~--~i~~~~G~hP~~~~~~ 69 (251)
T cd01310 1 LIDTHCHLDFPQFD--ADRDDVLARAREAGVIKIIVVGT---D----LKSSKRALELAKKYD--NVYAAVGLHPHDADEH 69 (251)
T ss_pred CEEeeeCCCchhhc--cCHHHHHHHHHHcCCCEEEEeCC---C----HHHHHHHHHHHHhCC--CeEEEEeeCcchhhcC
Confidence 68999999754321 23445567778899999998862 1 112222222222221 222112233322
Q ss_pred -hhhHHHHHHHHHc-CCcEE-EEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015110 176 -AYNASALEALLNA-GVLGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (413)
Q Consensus 176 -~~~~~~l~~l~~~-G~~~i-k~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~ 233 (413)
....+++++.++. ++.++ ++.+.............+.++.+++.|+++|+||.+|+..
T Consensus 70 ~~~~~~~l~~~~~~~~~~~IGeiGld~~~~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~ 130 (251)
T cd01310 70 VDEDLDLLELLAANPKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSRD 130 (251)
T ss_pred CHHHHHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeC
Confidence 1235666666543 45555 3332221000000124567899999999999999999853
No 119
>KOG3892 consensus N-acetyl-glucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=98.09 E-value=6e-06 Score=73.89 Aligned_cols=91 Identities=16% Similarity=0.225 Sum_probs=65.8
Q ss_pred eEEEccEEEcCCCceeeEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCC-CC-Cc----cch
Q 015110 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG-RT-EW----EGF 118 (413)
Q Consensus 45 lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~-~~-~~----e~~ 118 (413)
+-+.|++++-+.+....++.|+||||..-.+-.- .+...++..|||.|+++.|||||.....++.- +. +. |.+
T Consensus 14 lQFtNCrilR~g~l~~edlWVR~GRIldpe~vFF-eErt~Ad~riDCgG~IlaPGfIDlQiNGGfGvDFS~dte~~~eGv 92 (407)
T KOG3892|consen 14 LQFTNCRILRGGKLLREDLWVRGGRILDPEKVFF-EERTVADERIDCGGRILAPGFIDLQINGGFGVDFSQDTEDVGEGV 92 (407)
T ss_pred eeeeeeEEeeCCceeehheeEeCCeecCcccccc-eeccchhheeccCCeeecCceEEEEecCccccccccchhhhhhhH
Confidence 4588999998877788899999999975433110 01113567899999999999999998876542 11 12 344
Q ss_pred HHHHHHHHhCCceEEEeC
Q 015110 119 PSGTKAAAAGGITTLIDM 136 (413)
Q Consensus 119 ~~~~~~al~~GvTTv~d~ 136 (413)
...++..+++|+|++.--
T Consensus 93 AlVAr~ll~hGvtsf~Pt 110 (407)
T KOG3892|consen 93 ALVARQLLSHGVTSFCPT 110 (407)
T ss_pred HHHHHHHHhcCCCcCCCc
Confidence 456788899999998743
No 120
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=98.03 E-value=0.00036 Score=64.06 Aligned_cols=122 Identities=21% Similarity=0.259 Sum_probs=71.7
Q ss_pred eeecccccCCCCCCCccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC--CeeeEEeecee-cCCch
Q 015110 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR--IYVDVGFWGGL-VPENA 176 (413)
Q Consensus 100 lID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~ 176 (413)
|||+|+|+....+ .++.......+...||+-++..+. +.+.+...++.+... .+..++++... .....
T Consensus 3 liDtH~HL~~~~~--~~d~~~vi~~a~~~gv~~~~~~g~-------~~~~~~~~~~la~~y~~v~~~~G~HP~~~~~~~~ 73 (256)
T COG0084 3 LIDTHCHLDFEEF--DEDRDEVIARAREAGVKKMVVVGT-------DLEDFKRALELAEKYPNVYAAVGVHPLDADEHSE 73 (256)
T ss_pred cEEeeeCCCchhh--cCCHHHHHHHHHHcCCcEEEEeec-------CHHHHHHHHHHHHhCCCeEEEEeeCCCccccccH
Confidence 7999999986322 234455667788899999987651 233444444444432 23333333211 01113
Q ss_pred hhHHHHHHHHHc--CCcEEEEeecCCCCCCCCC------CCHHHHHHHHHHHHhcCCCEEEecCCh
Q 015110 177 YNASALEALLNA--GVLGLKSFMCPSGINDFPM------TNASHIKEGLSVLARYKRPLLVHAEME 234 (413)
Q Consensus 177 ~~~~~l~~l~~~--G~~~ik~~~~~~~~~~~~~------~~~~~l~~~~~~A~~~g~~v~~H~e~~ 234 (413)
+.++.+.+++.. .+.+|. ..|.+.+.. ...+.+++-++.|+++++|+.+|+++.
T Consensus 74 ~~~~~l~~~~~~~~~vvaIG----EiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A 135 (256)
T COG0084 74 EDLEELEQLAEHHPKVVAIG----EIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDA 135 (256)
T ss_pred HHHHHHHHHHhcCCCeEEEE----ecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 456777777763 444442 122222111 134578888999999999999999764
No 121
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=97.97 E-value=0.00016 Score=66.63 Aligned_cols=119 Identities=24% Similarity=0.252 Sum_probs=65.9
Q ss_pred eeecccccCCCCCCCccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCc----
Q 015110 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN---- 175 (413)
Q Consensus 100 lID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 175 (413)
|||+|+|+...... .+.....+.+...|+++++.+.. . ....+...+...... .+....++.+..
T Consensus 1 ~iD~H~Hl~~~~~~--~~~~~~~~~~~~~Gv~~~v~~~~--~-----~~~~~~~~~~~~~~~--~i~~~~GihP~~~~~~ 69 (252)
T TIGR00010 1 LIDAHCHLDFLDFE--EDVEEVIERAKAAGVTAVVAVGT--D-----LEDFLRALELAEKYP--NVYAAVGVHPLDVDDD 69 (252)
T ss_pred CEEeccCCCChhhc--cCHHHHHHHHHHcCCCEEEEecC--C-----HHHHHHHHHHHHHCC--CEEEEEEeCcchhhcC
Confidence 68999998743221 13555677788999999997752 1 123333333333222 222222222211
Q ss_pred -hhhHHHHHHHHH-cCCcEEE-EeecCCCCCCCCCC----CHHHHHHHHHHHHhcCCCEEEecCC
Q 015110 176 -AYNASALEALLN-AGVLGLK-SFMCPSGINDFPMT----NASHIKEGLSVLARYKRPLLVHAEM 233 (413)
Q Consensus 176 -~~~~~~l~~l~~-~G~~~ik-~~~~~~~~~~~~~~----~~~~l~~~~~~A~~~g~~v~~H~e~ 233 (413)
....++++++++ .++.++. +.+... .... ..+.++..++.|+++|++|.+|+..
T Consensus 70 ~~~~~~~l~~~l~~~~~~~iGEiGld~~----~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~ 130 (252)
T TIGR00010 70 TKEDIKELERLAAHPKVVAIGETGLDYY----KADEYKRRQEEVFRAQLQLAEELNLPVIIHARD 130 (252)
T ss_pred CHHHHHHHHHHccCCCEEEEEecccCcC----CCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecC
Confidence 223455666554 2344442 212211 0111 2478888899999999999999853
No 122
>PRK10812 putative DNAse; Provisional
Probab=97.93 E-value=0.00048 Score=64.03 Aligned_cols=126 Identities=16% Similarity=0.197 Sum_probs=70.7
Q ss_pred eeecccccCCCCCC-CccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC--eeeEEeeceecCCch
Q 015110 100 LIDVHAHLDDPGRT-EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI--YVDVGFWGGLVPENA 176 (413)
Q Consensus 100 lID~H~H~~~~~~~-~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 176 (413)
+||+|+|+....+. ..++.......+...||..++..+ .+.+.....++.+.... +..+|+|..... ..
T Consensus 3 ~iDtH~Hl~~~~~~~~~~d~~~vl~~a~~~gv~~~~~~~-------~~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~-~~ 74 (265)
T PRK10812 3 LVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVA-------TTLPGYRHMRDLVGERDNVVFSCGVHPLNQD-EP 74 (265)
T ss_pred eEEeccCCCCccchhhhcCHHHHHHHHHHcCCCEEEEeC-------CCHHHHHHHHHHHhhCCCeEEEEEeCCCCCC-Ch
Confidence 79999999743221 123555667888899999887654 12444444444444322 223333321111 12
Q ss_pred hhHHHHHHHHHc-CCcEE-EEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015110 177 YNASALEALLNA-GVLGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (413)
Q Consensus 177 ~~~~~l~~l~~~-G~~~i-k~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~ 233 (413)
..++.+.++++. .+.+| .+.+.+.-.........+.+++.++.|+++|+|+.+|+.+
T Consensus 75 ~~~~~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~ 133 (265)
T PRK10812 75 YDVEELRRLAAEEGVVAMGETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHTRD 133 (265)
T ss_pred hHHHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeC
Confidence 345666666643 34455 3333321000001123457888999999999999999865
No 123
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=97.92 E-value=0.00038 Score=64.48 Aligned_cols=123 Identities=22% Similarity=0.351 Sum_probs=69.1
Q ss_pred eeeeecccccCCCCCCCccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC--CeeeEEeeceecCC-
Q 015110 98 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR--IYVDVGFWGGLVPE- 174 (413)
Q Consensus 98 PGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~- 174 (413)
+.+||+|+|+....+ .++.......+...||+.++.+.. +.+.....++..... .+..+|++......
T Consensus 3 ~~~iD~HcHl~~~~~--~~~~~~~l~~a~~~gv~~~~~~~~-------~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~~~ 73 (258)
T PRK11449 3 CRFIDTHCHFDFPPF--SGDEEASLQRAAQAGVGKIIVPAT-------EAENFARVLALAERYQPLYAALGLHPGMLEKH 73 (258)
T ss_pred ceEEEeccCCCChhh--ccCHHHHHHHHHHCCCCEEEEeeC-------CHHHHHHHHHHHHhCCCEEEEEeeCcCccccC
Confidence 558999999975322 224445567778899999987651 234444444444322 22223333222111
Q ss_pred chhhHHHHHHHHHc---CCcEEEEeecCCCCCCCC-----CCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015110 175 NAYNASALEALLNA---GVLGLKSFMCPSGINDFP-----MTNASHIKEGLSVLARYKRPLLVHAEM 233 (413)
Q Consensus 175 ~~~~~~~l~~l~~~---G~~~ik~~~~~~~~~~~~-----~~~~~~l~~~~~~A~~~g~~v~~H~e~ 233 (413)
..+..+.++++++. .+.+|. .-|.+.+. ....+.+.+.++.|+++++||.+|+++
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~aIG----EiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~ 136 (258)
T PRK11449 74 SDVSLDQLQQALERRPAKVVAVG----EIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRR 136 (258)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEE----ecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecC
Confidence 22345556655532 233331 12222111 113457889999999999999999975
No 124
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=97.90 E-value=0.00045 Score=65.32 Aligned_cols=110 Identities=15% Similarity=0.169 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCc
Q 015110 209 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 288 (413)
Q Consensus 209 ~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~ 288 (413)
..+.+++.++.|+++|+||++|+++... +...++++.++.+. ...
T Consensus 134 q~~~f~~~~~lA~~~~~Pv~iH~~~~~~-------------------------------~~~~~l~~l~~~g~----~~~ 178 (293)
T cd00530 134 EEKVLRAAARAQKETGVPISTHTQAGLT-------------------------------MGLEQLRILEEEGV----DPS 178 (293)
T ss_pred HHHHHHHHHHHHHHHCCeEEEcCCCCcc-------------------------------ccHHHHHHHHHcCC----Chh
Confidence 4457889999999999999999965310 01122233322211 123
Q ss_pred eEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCcc--EEc
Q 015110 289 HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID--MLS 366 (413)
Q Consensus 289 ~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~--~i~ 366 (413)
++.+.|+-.. ...+.++++.+.|..+..+....+- ..+ .++ .....+.+++.++.|..| +++
T Consensus 179 ~~vi~H~~~~-~~~~~~~~~~~~G~~i~~~~~~~~~--------~~~-----~~~--~~~~~~~l~~~~~~~~~d~ill~ 242 (293)
T cd00530 179 KVVIGHLDRN-DDPDYLLKIAALGAYLEFDGIGKDK--------IFG-----YPS--DETRADAVKALIDEGYGDRLLLS 242 (293)
T ss_pred heEEeCCCCC-CCHHHHHHHHhCCCEEEeCCCCccc--------ccC-----CCC--HHHHHHHHHHHHHCCCcCCEEEe
Confidence 4678898632 3456778888888666544322100 000 111 133556688889999888 999
Q ss_pred CCC
Q 015110 367 SDH 369 (413)
Q Consensus 367 sDh 369 (413)
||.
T Consensus 243 TD~ 245 (293)
T cd00530 243 HDV 245 (293)
T ss_pred CCc
Confidence 996
No 125
>PRK10425 DNase TatD; Provisional
Probab=97.83 E-value=0.00067 Score=62.79 Aligned_cols=125 Identities=13% Similarity=0.096 Sum_probs=67.4
Q ss_pred eeecccccCCCCCCCccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC--eeeEEeeceecCC-ch
Q 015110 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI--YVDVGFWGGLVPE-NA 176 (413)
Q Consensus 100 lID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~ 176 (413)
|||+|+|+....+ .++.......+...||..++..+. +.+.....++.+.... +..+|+|...... ..
T Consensus 1 ~iDtH~HL~~~~~--~~d~~~vl~~a~~~gv~~~i~~~~-------~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~~~~~ 71 (258)
T PRK10425 1 MFDIGVNLTSSQF--AKDRDDVVARAFAAGVNGMLITGT-------NLRESQQAQKLARQYPSCWSTAGVHPHDSSQWQA 71 (258)
T ss_pred CEEeeeCcCChhh--hccHHHHHHHHHHCCCCEEEEeCC-------CHHHHHHHHHHHHhCCCEEEEEEeCcCccccCCH
Confidence 6899999975332 235556677888899988886541 2344444444444322 2223333211111 12
Q ss_pred hhHHHHHHHHHcC-CcEEE-EeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015110 177 YNASALEALLNAG-VLGLK-SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (413)
Q Consensus 177 ~~~~~l~~l~~~G-~~~ik-~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~ 233 (413)
+..+.+.++++.. +.++. +.+.+...........+.+++.++.|+++++|+.+|+.+
T Consensus 72 ~~~~~l~~~~~~~~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~ 130 (258)
T PRK10425 72 ATEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCRD 130 (258)
T ss_pred HHHHHHHHhccCCCEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 2345565555432 22331 222221000000112357888999999999999999964
No 126
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=97.66 E-value=0.0017 Score=56.92 Aligned_cols=172 Identities=20% Similarity=0.284 Sum_probs=94.9
Q ss_pred eeecccccCCCCCCCccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc-------CC----eeeEEee
Q 015110 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-------RI----YVDVGFW 168 (413)
Q Consensus 100 lID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~~~~~~~ 168 (413)
+||+|+|++..++ .-...+..+|+-+++.+.+...| ..+.+.+....++..+ +. .+.++.+
T Consensus 2 ~iD~HiH~d~r~~-------eDlekMa~sGI~~Vit~AhdP~~-~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvH 73 (254)
T COG1099 2 YIDSHIHLDVRGF-------EDLEKMALSGIREVITLAHDPYP-MKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVH 73 (254)
T ss_pred ccccccccccccH-------HHHHHHHHhChhhhhhcccCCCC-cccHHHHHHHHHHHHccchhhHHhhCceeeEEeccC
Confidence 6999999986543 23456677888888877643333 2345555555444311 11 2223333
Q ss_pred ceecCCc-hhhHHHHHHHHH-cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccC
Q 015110 169 GGLVPEN-AYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDD 246 (413)
Q Consensus 169 ~~~~~~~-~~~~~~l~~l~~-~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~ 246 (413)
....+.+ ...+.++.++.. .++++|.- .|.+..+-...+.++.-++.|+++++|+.+|.-...-
T Consensus 74 Pr~iP~e~~~~l~~L~~~l~~e~VvAiGE----iGLe~~t~~E~evf~~QL~LA~e~dvPviVHTPr~nK---------- 139 (254)
T COG1099 74 PRAIPPELEEVLEELEELLSNEDVVAIGE----IGLEEATDEEKEVFREQLELARELDVPVIVHTPRRNK---------- 139 (254)
T ss_pred CCCCCchHHHHHHHHHhhcccCCeeEeee----cccccCCHHHHHHHHHHHHHHHHcCCcEEEeCCCCcc----------
Confidence 2222222 234555665554 45555532 1222222223457888899999999999999632211
Q ss_pred cCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccc
Q 015110 247 TLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCP 321 (413)
Q Consensus 247 ~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p 321 (413)
.+...++++++...++ ..-.+.|.|++. +.++. .-.++..+-.++.|
T Consensus 140 -------------------~e~t~~ildi~~~~~l----~~~lvvIDH~N~--etv~~---vld~e~~vGlTvqP 186 (254)
T COG1099 140 -------------------KEATSKILDILIESGL----KPSLVVIDHVNE--ETVDE---VLDEEFYVGLTVQP 186 (254)
T ss_pred -------------------hhHHHHHHHHHHHcCC----ChhheehhcccH--HHHHH---HHhccceEEEEecC
Confidence 1356677777765432 244578999876 44542 22234455555555
No 127
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=97.66 E-value=0.00074 Score=62.55 Aligned_cols=166 Identities=22% Similarity=0.233 Sum_probs=86.3
Q ss_pred eecccccCCCCCCCccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC---CeeeEEeeceecCC-ch
Q 015110 101 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR---IYVDVGFWGGLVPE-NA 176 (413)
Q Consensus 101 ID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~ 176 (413)
||+|+|+....+ .++.....+.+...|++.++.+.. ..+......+..... ....+|+|...... ..
T Consensus 1 iD~H~Hl~~~~~--~~~~~~~~~~~~~~g~~~~i~~~~-------~~~~~~~~~~~~~~~~~~v~~~~GiHP~~~~~~~~ 71 (255)
T PF01026_consen 1 IDAHCHLDSPRF--EEDRPEVLERAREAGVSAIIIVST-------DPEDWERVLELASQYPDRVYPALGIHPWEAHEVNE 71 (255)
T ss_dssp EEEEE-TTSGGG--TTTHHHHHHHHHHTTEEEEEEEES-------SHHHHHHHHHHHHHTTTEEEEEE---GGGGGGHSH
T ss_pred CcCccCCCChhh--CcCHHHHHHHHHHcCCCEEEEcCC-------CHHHhHHHHHHHhcCCCeEEEEecCCcchhhhhhH
Confidence 799999986211 234556678889999999986652 123334333333321 22333333211111 22
Q ss_pred hhHHHHHHH--HH-cCCcEE-EEeecCCCCCCC-CCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCcc
Q 015110 177 YNASALEAL--LN-AGVLGL-KSFMCPSGINDF-PMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR 251 (413)
Q Consensus 177 ~~~~~l~~l--~~-~G~~~i-k~~~~~~~~~~~-~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~ 251 (413)
+..+.++++ .+ ..+.+| .+.+.+...... .....+.+.+.++.|+++++|+.+|+....
T Consensus 72 ~~~~~l~~l~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~a~---------------- 135 (255)
T PF01026_consen 72 EDLEELEELINLNRPKVVAIGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRKAH---------------- 135 (255)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEESHH----------------
T ss_pred HHHHHHHHHHHhccccceeeeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCCcH----------------
Confidence 334566666 43 334444 233332100000 012355789999999999999999997522
Q ss_pred ccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEE
Q 015110 252 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSIT 316 (413)
Q Consensus 252 ~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~ 316 (413)
.+++++.++++. .+. --+.|.-+. ..+.++++.+.|..++
T Consensus 136 ------------------~~~l~il~~~~~----~~~-~~i~H~f~g--~~~~~~~~~~~g~~~S 175 (255)
T PF01026_consen 136 ------------------EELLEILKEYGP----PNL-RVIFHCFSG--SPEEAKKFLDLGCYFS 175 (255)
T ss_dssp ------------------HHHHHHHHHTTG----GTS-EEEETT--S---HHHHHHHHHTTEEEE
T ss_pred ------------------HHHHHHHHhccc----cce-eEEEecCCC--CHHHHHHHHhcCceEE
Confidence 234455554310 122 468887663 4667777776765544
No 128
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=97.51 E-value=0.014 Score=54.26 Aligned_cols=122 Identities=18% Similarity=0.185 Sum_probs=69.6
Q ss_pred eeeecccccCCCCCCC----------ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEee
Q 015110 99 GLIDVHAHLDDPGRTE----------WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 168 (413)
Q Consensus 99 GlID~H~H~~~~~~~~----------~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (413)
|.||+|.|+..+.... .-........+-..||+..+-+..... ...+. .+.+..+. ..+ ...+..
T Consensus 1 ~~iD~H~H~~~~~~~~~~~~~~~~~~~~~~e~l~~~m~~~gV~~aV~vq~~~~-~~~n~-~~~~~~~~-~~r-~~g~~~- 75 (263)
T cd01311 1 GAVDAHMHVFDPGYPFPPAPEKFTPYDPGIDDLRALRSTLGIDRVVIVQASIY-GADNS-NLLDALAS-NGK-ARGGAT- 75 (263)
T ss_pred CCEEeeeeeeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCcEEEeCcccc-CCchH-HHHHHHhh-CCC-eEEEEE-
Confidence 6799999997543210 112233445556789888876652211 11222 22222221 111 111111
Q ss_pred ceecCCchhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015110 169 GGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (413)
Q Consensus 169 ~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~ 233 (413)
+.+.. ...++++++.+.|+.|+++.....+ ..+.+.+..+++.+.++|+++.+|+..
T Consensus 76 --~~p~~-~~~~~l~~~~~~g~rGvRl~~~~~~-----~~~~~~~~~~~~~~~~~gl~v~~~~~~ 132 (263)
T cd01311 76 --VDPRT-TTDAELKEMHDAGVRGVRFNFLFGG-----VDNKDELDEIAKRAAELGWHVQVYFDA 132 (263)
T ss_pred --ECCCC-CCHHHHHHHHHCCCeEEEEecccCC-----CCCHHHHHHHHHHHHHcCCEEEEEeCH
Confidence 11222 2356787888889999997533221 237778899999999999999999853
No 129
>PRK09358 adenosine deaminase; Provisional
Probab=97.30 E-value=0.032 Score=53.99 Aligned_cols=25 Identities=16% Similarity=0.054 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEecC
Q 015110 208 TNASHIKEGLSVLARYKRPLLVHAE 232 (413)
Q Consensus 208 ~~~~~l~~~~~~A~~~g~~v~~H~e 232 (413)
.+.+.+..+++.|+++|+++++|+.
T Consensus 179 ~~~~~~~~~~~~A~~~g~~~~~H~~ 203 (340)
T PRK09358 179 FPPSKFARAFDRARDAGLRLTAHAG 203 (340)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEcCC
Confidence 4678999999999999999999984
No 130
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=97.14 E-value=0.037 Score=53.10 Aligned_cols=25 Identities=12% Similarity=0.016 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEecC
Q 015110 208 TNASHIKEGLSVLARYKRPLLVHAE 232 (413)
Q Consensus 208 ~~~~~l~~~~~~A~~~g~~v~~H~e 232 (413)
.+.+++..+++.|+++|+++.+|+.
T Consensus 170 ~~~~~~~~~~~~A~~~g~~v~~H~~ 194 (325)
T cd01320 170 FPPEKFVRAFQRAREAGLRLTAHAG 194 (325)
T ss_pred CCHHHHHHHHHHHHHCCCceEEeCC
Confidence 4788999999999999999999984
No 131
>PRK09875 putative hydrolase; Provisional
Probab=97.11 E-value=0.077 Score=49.96 Aligned_cols=238 Identities=16% Similarity=0.176 Sum_probs=117.4
Q ss_pred eeeecccccCCCC--CC--------CccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEee
Q 015110 99 GLIDVHAHLDDPG--RT--------EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 168 (413)
Q Consensus 99 GlID~H~H~~~~~--~~--------~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (413)
|+..+|=|+.... .. ..+......+...+.|+.|++|+. + .....+.+.+++..+...-+..+..++|
T Consensus 7 G~tl~HEHl~~~~~~~~~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T-~-~g~GRd~~~l~~is~~tgv~Iv~~TG~y 84 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMT-N-RYMGRNAQFMLDVMRETGINVVACTGYY 84 (292)
T ss_pred CcceecCCeEecChhhcCCcccccccHHHHHHHHHHHHHhCCCeEEecC-C-CccCcCHHHHHHHHHHhCCcEEEcCcCC
Confidence 7888899985321 11 111222344556788999999985 2 2234456666554443221122222332
Q ss_pred ce-ecCCc--hhhHHHHH----HHHHcCCc-------EE-EEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015110 169 GG-LVPEN--AYNASALE----ALLNAGVL-------GL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (413)
Q Consensus 169 ~~-~~~~~--~~~~~~l~----~l~~~G~~-------~i-k~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~ 233 (413)
.. ..+.. ....+++. +.+..|.. .| ++..+... ......+.++++.+.+++.|.|+.+|..-
T Consensus 85 ~~~~~p~~~~~~~~e~la~~~i~ei~~Gi~gt~ikaGvIGeiG~~~~~---it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~ 161 (292)
T PRK09875 85 QDAFFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGSSEGK---ITPLEEKVFIAAALAHNQTGRPISTHTSF 161 (292)
T ss_pred CCccCCHHHhcCCHHHHHHHHHHHHHHhhccCCCcccEEEEEecCCCC---CCHHHHHHHHHHHHHHHHHCCcEEEcCCC
Confidence 21 11110 00112222 11223322 13 33222210 11123446777788888999999999743
Q ss_pred hhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCc---eEEEEccCChhhHHHHHHHHHH
Q 015110 234 EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA---HLHIVHLSDASSSLDLLMEAKT 310 (413)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~---~vhi~H~s~~~~~~~~i~~ak~ 310 (413)
... +.+ .++++++. |+ ++.|.|+... ..++.+++.-+
T Consensus 162 ~~~-------------------------------g~e-~l~il~e~-------Gvd~~rvvi~H~d~~-~d~~~~~~l~~ 201 (292)
T PRK09875 162 STM-------------------------------GLE-QLALLQAH-------GVDLSRVTVGHCDLK-DNLDNILKMID 201 (292)
T ss_pred ccc-------------------------------hHH-HHHHHHHc-------CcCcceEEEeCCCCC-CCHHHHHHHHH
Confidence 211 111 13444442 55 7999999866 56778888878
Q ss_pred CCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCcc--EEcCCCCCCChhhhccCCCCccccC
Q 015110 311 NGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID--MLSSDHSPTVPELKLLDEGNFLKAW 388 (413)
Q Consensus 311 ~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~--~i~sDh~p~~~~~k~~~~~~~~~~~ 388 (413)
+|..+-.++.-. + +..| +.+-.+.+...++.|-.| .+++|-...+. -+ .+ --
T Consensus 202 ~G~~l~fD~~g~------------~---~~~p---d~~r~~~i~~L~~~Gy~drilLS~D~~~~~~-~~-----~~--gg 255 (292)
T PRK09875 202 LGAYVQFDTIGK------------N---SYYP---DEKRIAMLHALRDRGLLNRVMLSMDITRRSH-LK-----AN--GG 255 (292)
T ss_pred cCCEEEeccCCC------------c---ccCC---HHHHHHHHHHHHhcCCCCeEEEeCCCCCccc-cc-----cc--CC
Confidence 887666552110 1 0112 122345555556677443 67888743211 01 00 01
Q ss_pred CCc-chHhHHHHHHhhhcccc
Q 015110 389 GGI-SSLQIFCSLFFLSRGLM 408 (413)
Q Consensus 389 ~G~-~~~e~~l~~~~~~~gv~ 408 (413)
.|+ -.+..++|.|. ..||-
T Consensus 256 ~G~~~i~~~~ip~L~-~~Gvs 275 (292)
T PRK09875 256 YGYDYLLTTFIPQLR-QSGFS 275 (292)
T ss_pred CChhHHHHHHHHHHH-HcCCC
Confidence 122 23456777776 56764
No 132
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=96.90 E-value=0.007 Score=56.13 Aligned_cols=111 Identities=19% Similarity=0.200 Sum_probs=64.7
Q ss_pred chhhHHHHHHHH-HcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCcccc
Q 015110 175 NAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 253 (413)
Q Consensus 175 ~~~~~~~l~~l~-~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~ 253 (413)
..+..+++++.+ +.|..+++++....+ ....+......+++.|+++|++|.+|+.......
T Consensus 83 ~~~~~~~l~~~~~~~g~~Gv~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~--------------- 144 (273)
T PF04909_consen 83 PEDAVEELERALQELGFRGVKLHPDLGG---FDPDDPRLDDPIFEAAEELGLPVLIHTGMTGFPD--------------- 144 (273)
T ss_dssp HHHHHHHHHHHHHTTTESEEEEESSETT---CCTTSGHCHHHHHHHHHHHT-EEEEEESHTHHHH---------------
T ss_pred chhHHHHHHHhccccceeeeEecCCCCc---cccccHHHHHHHHHHHHhhccceeeeccccchhh---------------
Confidence 345677777777 789999998754432 1122333334899999999999999965110000
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCCh----hhHHHHHHHHHHCCCCEEEEccc
Q 015110 254 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA----SSSLDLLMEAKTNGDSITVETCP 321 (413)
Q Consensus 254 ~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~----~~~~~~i~~ak~~G~~v~~e~~p 321 (413)
..........+..++++ ++++++.+.|+... .+.++++++. -+++++++-
T Consensus 145 --------~~~~~~~~~~~~~~~~~------~P~l~ii~~H~G~~~~~~~~~~~l~~~~----~nvy~d~s~ 198 (273)
T PF04909_consen 145 --------APSDPADPEELEELLER------FPDLRIILAHLGGPFPWWEEALRLLDRF----PNVYVDLSG 198 (273)
T ss_dssp --------HHHHHHHHHHHTTHHHH------STTSEEEESGGGTTHHHHHHHHHHHHHH----TTEEEECHS
T ss_pred --------hhHHHHHHHHHHHHHHH------hcCCeEEEecCcccchhHHHHHHHHHhC----Ccccccccc
Confidence 00111233444455665 36999999999864 1223333333 267777654
No 133
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=96.88 E-value=0.078 Score=50.89 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEecC
Q 015110 208 TNASHIKEGLSVLARYKRPLLVHAE 232 (413)
Q Consensus 208 ~~~~~l~~~~~~A~~~g~~v~~H~e 232 (413)
.+.+.+..+++.|+++|+++.+|+.
T Consensus 169 ~~~~~~~~~~~~A~~~g~~i~~Ha~ 193 (324)
T TIGR01430 169 GPPPDFVRAFAIARELGLHLTVHAG 193 (324)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEecC
Confidence 4578999999999999999999984
No 134
>PF00449 Urease_alpha: Urease alpha-subunit, N-terminal domain; InterPro: IPR011612 Urease (urea amidohydrolase, 3.5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies [], but each holoenzyme consists of four structural domains []: three structural domains and a nickel-binding catalytic domain common to amidohydrolases []. Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organisation as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organisation (IPR008221 from INTERPRO). The N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit []. ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0019627 urea metabolic process; PDB: 3LA4_A 2UBP_C 3UBP_C 1UBP_C 1S3T_C 1IE7_C 4UBP_C 1E9Y_B 1E9Z_B 3QGA_O ....
Probab=96.86 E-value=0.0021 Score=50.09 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=31.5
Q ss_pred CcceEEEccEEEcCCCceeeEEEEECCEEEEcccCC
Q 015110 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEE 77 (413)
Q Consensus 42 ~~~lli~n~~vi~~~~~~~~~V~I~dG~I~~Ig~~~ 77 (413)
..+++|.|+.|+|..++..++|.|+||||+.||+.-
T Consensus 65 ~lD~VItNa~IiD~~GI~KADIGIkdG~I~gIGkAG 100 (121)
T PF00449_consen 65 ALDLVITNALIIDYTGIVKADIGIKDGRIVGIGKAG 100 (121)
T ss_dssp C-SEEEEEEEEEETTEEEEEEEEEETTEEEEEE-EB
T ss_pred cccEEEeCcEEEecCCcEEeeEEeeCCEEEEEeccC
Confidence 468999999999998889999999999999999754
No 135
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=95.89 E-value=0.12 Score=49.13 Aligned_cols=224 Identities=20% Similarity=0.215 Sum_probs=107.3
Q ss_pred eeeecccccCCCCC-------CCcc----c---hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeee
Q 015110 99 GLIDVHAHLDDPGR-------TEWE----G---FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD 164 (413)
Q Consensus 99 GlID~H~H~~~~~~-------~~~e----~---~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (413)
|+..+|=|+..... ..++ + .....+.+.+.|+.|++|+. + .....+.+.+++.-+...-+....
T Consensus 7 G~tl~HEHl~~d~~~~~~~~~~~~~~~~~~~~~~~~El~~~k~~Gg~tiVd~T-~-~g~GRd~~~l~~is~~tGv~II~~ 84 (308)
T PF02126_consen 7 GFTLMHEHLLIDLSGFYKDPDEALDDRDEDVEAAVAELKEFKAAGGRTIVDAT-P-IGLGRDVEALREISRRTGVNIIAS 84 (308)
T ss_dssp SSEEEEEESEEETTTHHHHTGGGGCGHHHHHHHHHHHHHHHHHTTEEEEEE---S-GGGTB-HHHHHHHHHHHT-EEEEE
T ss_pred CCeecccCeeecChhhccCCCcchhhhhhhHHHHHHHHHHHHHcCCCEEEecC-C-cccCcCHHHHHHHHHHhCCeEEEe
Confidence 78889999853211 1111 1 22345556789999999986 1 122345555555444332222333
Q ss_pred EEeecee-cCCc--hhhHHHHHHH----HHcCCc-------EEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015110 165 VGFWGGL-VPEN--AYNASALEAL----LNAGVL-------GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 230 (413)
Q Consensus 165 ~~~~~~~-~~~~--~~~~~~l~~l----~~~G~~-------~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H 230 (413)
.+++... .+.. ....+++.++ +..|+. .||...+... ........++++....++.|+++++|
T Consensus 85 TG~y~~~~~p~~~~~~s~e~la~~~i~Ei~~GidgT~ikaG~Ik~~~~~~~---it~~E~k~lrAaa~A~~~TG~pI~~H 161 (308)
T PF02126_consen 85 TGFYKEPFYPEWVREASVEELADLFIREIEEGIDGTGIKAGIIKEIGSSNP---ITPLEEKVLRAAARAHKETGAPISTH 161 (308)
T ss_dssp EEE-SGGCSCHHHHTSHHHHHHHHHHHHHHT-STTSSB-ESEEEEEEBTTB---CEHHHHHHHHHHHHHHHHHT-EEEEE
T ss_pred CCCCccccCChhhhcCCHHHHHHHHHHHHHhcCCCCccchhheeEeeccCC---CCHHHHHHHHHHHHHHHHhCCeEEEc
Confidence 4444321 1110 0112333332 345554 2444332211 11123446777777788899999999
Q ss_pred cCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHH
Q 015110 231 AEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKT 310 (413)
Q Consensus 231 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~ 310 (413)
++..... + .+.+++.++.|. .--++.++|+... ..++.+++.-+
T Consensus 162 ~~~g~~~------------------------------~-~e~~~il~e~Gv----~~~rvvigH~D~~-~D~~y~~~la~ 205 (308)
T PF02126_consen 162 TGRGTRM------------------------------G-LEQLDILEEEGV----DPSRVVIGHMDRN-PDLDYHRELAD 205 (308)
T ss_dssp ESTTGTC------------------------------H-HHHHHHHHHTT------GGGEEETSGGGS-T-HHHHHHHHH
T ss_pred CCCCCcC------------------------------H-HHHHHHHHHcCC----ChhHeEEeCCCCC-CCHHHHHHHHh
Confidence 8543210 0 111222222211 1246999999876 77888888888
Q ss_pred CCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCcc--EEcCCCCC
Q 015110 311 NGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID--MLSSDHSP 371 (413)
Q Consensus 311 ~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~--~i~sDh~p 371 (413)
+|+.+..|+..+.++.- ..++..+ .|| +....+.|.+.+++|--| .++.|-+-
T Consensus 206 ~G~~l~~D~~g~~~~g~-----~~~~~~~-~~~--d~~ri~~l~~L~~~Gy~~qIlLS~D~~~ 260 (308)
T PF02126_consen 206 RGVYLEFDTIGREFSGK-----DKNPRVG-YPP--DEERIELLKELIEEGYADQILLSHDIGR 260 (308)
T ss_dssp TT-EEEETTTT-B-TTT-----TTCHSCT-TS---HHHHHHHHHHHHHTTTGGGEEE-HHHES
T ss_pred cCCEEEecCCcccccCc-----ccCccCC-CCC--HHHHHHHHHHHHHcCCcCcEEEeccccc
Confidence 99888877654422100 0001111 121 233455667777788765 67777543
No 136
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=95.85 E-value=1.6 Score=41.27 Aligned_cols=143 Identities=17% Similarity=0.166 Sum_probs=80.3
Q ss_pred hHHHHHHHHH-cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccC
Q 015110 178 NASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 256 (413)
Q Consensus 178 ~~~~l~~l~~-~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~ 256 (413)
..+++++.++ .|.+++++.-... ....++..+..+++.|.++|+|+.+|.-...... +.. .+
T Consensus 114 a~~E~er~v~~~gf~g~~l~p~~~----~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~----------~~~---~~ 176 (293)
T COG2159 114 AAEELERRVRELGFVGVKLHPVAQ----GFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGA----------GLE---KG 176 (293)
T ss_pred HHHHHHHHHHhcCceEEEeccccc----CCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCc----------ccc---cC
Confidence 4567777776 5888988743221 1234556689999999999999999975432200 000 00
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccC--ChhhHHHHHHHHHHCCCCEEEEccccccccccccCCCC
Q 015110 257 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS--DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 334 (413)
Q Consensus 257 ~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s--~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~ 334 (413)
.+.|... -.++++ ++..++.+.|+. .. --.+.+..++ +.-+++.+++-.
T Consensus 177 -~~~p~~~--------~~va~~------fP~l~IVl~H~G~~~p-~~~~a~~~a~-~~~nvy~d~s~~------------ 227 (293)
T COG2159 177 -HSDPLYL--------DDVARK------FPELKIVLGHMGEDYP-WELEAIELAY-AHPNVYLDTSGV------------ 227 (293)
T ss_pred -CCCchHH--------HHHHHH------CCCCcEEEEecCCCCc-hhHHHHHHHH-hCCCceeeeecc------------
Confidence 1334332 234554 468999999998 43 2233444442 223555554432
Q ss_pred CcceEEcCCCCChhcHHHHHHHHhcC--CccEEcCCCCCCChhhh
Q 015110 335 DTRFKCAPPIRDAANKEKLWEALMDG--HIDMLSSDHSPTVPELK 377 (413)
Q Consensus 335 ~~~~k~~Pplr~~~~~~~L~~~l~~G--~i~~i~sDh~p~~~~~k 377 (413)
..++-+| .+|+.+.++ .-..+||| .|+...++
T Consensus 228 --~~~~~~~--------~~~~~~~~~~~dkilFGSD-~P~~~~~~ 261 (293)
T COG2159 228 --RPKYFAP--------PLLEFLKELGPDKILFGSD-YPAIHPEV 261 (293)
T ss_pred --ccccCCh--------HHHHHHHhcccCeEEecCC-CCCcCHHH
Confidence 1122222 445545442 34589999 57655443
No 137
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=95.31 E-value=0.23 Score=49.10 Aligned_cols=102 Identities=21% Similarity=0.207 Sum_probs=53.8
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-eeeEEeec---e---ecCCchhhHHHHHHH--H--HcCC
Q 015110 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWG---G---LVPENAYNASALEAL--L--NAGV 190 (413)
Q Consensus 122 ~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~---~~~~~~~~~~~l~~l--~--~~G~ 190 (413)
...+.+.|+||+.++. .......+.+....+...... .+++..+. + +.+........+.+. + ..|.
T Consensus 136 ~~~~~a~GiTt~~d~~---~~~~~~~~~~~~~~~l~~~~~l~~rv~~~~~~~~vk~~~dg~~~~~~a~~~~~~~~~~~g~ 212 (404)
T PF07969_consen 136 AMAAGAYGITTVLDYG---GGFASDPEDLEALRELAAEGGLPLRVHLYPRIGGVKIFADGSPGGRTALLEEPYYADEPGA 212 (404)
T ss_dssp HHHHCHTCEEEETTCE---CCCGEHHHHHHHHHHHHHCTC--SEEEEEEEEEEEEEESSSSTTHHHHHHHHHHHHHHHTS
T ss_pred HHHhcCCCeEEecCCc---cccCCCHHHHHHHHHHhhhcCCCeeeeeecccCceeeccccccccchhhhccccccCcccc
Confidence 4456789999999886 122344566666655554322 23333221 1 122222122222222 1 1232
Q ss_pred cEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCCh
Q 015110 191 LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME 234 (413)
Q Consensus 191 ~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~ 234 (413)
. .. . .+.+..+.+++.++++.|.+.|+.+.+|+...
T Consensus 213 ~-~~--~-----~g~~~~~~~~l~~~v~~a~~~g~~v~vHa~gd 248 (404)
T PF07969_consen 213 P-VH--I-----SGLPSFDPEELEELVRAAREAGLQVAVHAIGD 248 (404)
T ss_dssp E-EE--E-----TC--SSSHHHHHHHHHHHHHCT-EEEEEEESH
T ss_pred c-cc--c-----cccccccchhHHHHHHHHHhcCCeeEEEEcCC
Confidence 1 11 1 12345788889999999999999999999543
No 138
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=95.23 E-value=1.2 Score=41.48 Aligned_cols=73 Identities=10% Similarity=0.188 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCce
Q 015110 210 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 289 (413)
Q Consensus 210 ~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~ 289 (413)
...|+++.+..++.|.|+.+|.+.... +.+.+--+.++ + ..-.+
T Consensus 151 ek~lrAaA~A~~~Tg~Pi~tHt~~gt~-------------------------------g~eq~~il~~e-g----vdl~~ 194 (316)
T COG1735 151 EKSLRAAARAHKETGAPISTHTPAGTM-------------------------------GLEQLRILAEE-G----VDLRK 194 (316)
T ss_pred HHHHHHHHHHhhhcCCCeEEeccchhh-------------------------------hHHHHHHHHHc-C----CChhH
Confidence 345777777777899999999865331 11111111221 1 01246
Q ss_pred EEEEccC-ChhhHHHHHHHHHHCCCCEEEEc
Q 015110 290 LHIVHLS-DASSSLDLLMEAKTNGDSITVET 319 (413)
Q Consensus 290 vhi~H~s-~~~~~~~~i~~ak~~G~~v~~e~ 319 (413)
+.|+|+. +. +.+...+.++.+|..+..+.
T Consensus 195 v~igH~d~n~-dd~~y~~~l~~~Ga~l~fD~ 224 (316)
T COG1735 195 VSIGHMDPNT-DDVYYQKKLADRGAFLEFDR 224 (316)
T ss_pred eeEeccCCCC-ChHHHHHHHHhcCceEEecc
Confidence 8999998 66 77889999998897666553
No 139
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=93.76 E-value=1.9 Score=41.96 Aligned_cols=196 Identities=16% Similarity=0.152 Sum_probs=98.4
Q ss_pred cCCCEEeeeeeecccccCCC----CCC--------------CccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHH
Q 015110 91 YGEAVIMPGLIDVHAHLDDP----GRT--------------EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKL 152 (413)
Q Consensus 91 ~~G~~vlPGlID~H~H~~~~----~~~--------------~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~ 152 (413)
+.|++|+|.=++ |-.+... ++. +.+.-..-.+.|++.|.-|+.|.+. .. +...++.
T Consensus 35 A~G~iVIp~N~~-h~~~~p~~IG~gl~tKVNaNIGtS~~~~d~~~E~~K~~~A~~~GADtiMDLSt--gg---dl~~iR~ 108 (431)
T PRK13352 35 AEGRIVIPANIN-HKNLKPVGIGKGLRTKVNANIGTSSDISDIEEELEKAKVAVKYGADTIMDLST--GG---DLDEIRR 108 (431)
T ss_pred hCceEEEecCCC-CCCCCeeEEcCCceeEEeeeecCCCCCCCHHHHHHHHHHHHHcCCCeEeeccC--CC---CHHHHHH
Confidence 578888887776 5543211 111 1111223467889999999999862 11 1222322
Q ss_pred HHHHHhcCCeeeEEeece----------ecC-CchhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHH
Q 015110 153 KVDAAEKRIYVDVGFWGG----------LVP-ENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLA 221 (413)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~ 221 (413)
.+-....-+.-.+..|.. +.. +..+.++.+++..+.|++.+.+.. ..+ ++.++.++
T Consensus 109 ~il~~s~vpvGTVPiYqa~~~~~~k~~~~~~mt~d~~~~~ie~qa~~GVDfmTiHc---------Gi~----~~~~~~~~ 175 (431)
T PRK13352 109 AIIEASPVPVGTVPIYQAAVEAARKYGSVVDMTEDDLFDVIEKQAKDGVDFMTIHC---------GVT----RETLERLK 175 (431)
T ss_pred HHHHcCCCCCcChhHHHHHHHHHhcCCChhhCCHHHHHHHHHHHHHhCCCEEEEcc---------chh----HHHHHHHH
Confidence 221111111111111111 000 112345666666777776655421 112 33444555
Q ss_pred hcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCCh---
Q 015110 222 RYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--- 298 (413)
Q Consensus 222 ~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~--- 298 (413)
+.+...-+=.+.-..+...+...+ ++ .|-+ +...+++++++++ ++-+.+...-.+
T Consensus 176 ~~~R~~giVSRGGs~~~~WM~~n~-~E-----------NPly---e~fD~lLeI~~~y-------DVtlSLGDglRPG~i 233 (431)
T PRK13352 176 KSGRIMGIVSRGGSFLAAWMLHNN-KE-----------NPLY---EHFDYLLEILKEY-------DVTLSLGDGLRPGCI 233 (431)
T ss_pred hcCCccCeecCCHHHHHHHHHHcC-Cc-----------CchH---HHHHHHHHHHHHh-------CeeeeccCCcCCCcc
Confidence 555444444454444433333222 11 2222 3678899999986 444443332110
Q ss_pred ----hhH--------HHHHHHHHHCCCCEEEEcccccccccc
Q 015110 299 ----SSS--------LDLLMEAKTNGDSITVETCPHYLAFSA 328 (413)
Q Consensus 299 ----~~~--------~~~i~~ak~~G~~v~~e~~p~~l~l~~ 328 (413)
|.+ -++.++|+++|+.|-+| -|-|.-+++
T Consensus 234 ~Da~D~aQi~El~~lgeL~~RA~e~gVQvMVE-GPGHvPl~~ 274 (431)
T PRK13352 234 ADATDRAQIQELITLGELVKRAREAGVQVMVE-GPGHVPLDQ 274 (431)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEE-CCCCCCHHH
Confidence 011 16778899999999999 587776664
No 140
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=93.75 E-value=5.4 Score=36.54 Aligned_cols=27 Identities=7% Similarity=0.119 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHhcCCCEEEecCChh
Q 015110 209 NASHIKEGLSVLARYKRPLLVHAEMEK 235 (413)
Q Consensus 209 ~~~~l~~~~~~A~~~g~~v~~H~e~~~ 235 (413)
+.+.|..+++.|++.|++|+.|.++.+
T Consensus 143 ~n~vl~~a~elA~dvdc~vqLHtes~~ 169 (285)
T COG1831 143 SNEVLEYAMELAKDVDCAVQLHTESLD 169 (285)
T ss_pred HHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 456788999999999999999998765
No 141
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=93.54 E-value=3.4 Score=40.06 Aligned_cols=168 Identities=14% Similarity=0.052 Sum_probs=89.4
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeecee-------cC-CchhhHHHHHHHHHcCCc
Q 015110 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL-------VP-ENAYNASALEALLNAGVL 191 (413)
Q Consensus 120 ~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~l~~l~~~G~~ 191 (413)
.-.+.|++.|.-|+.|.+. . .+...++..+-....-+.-.+..|... .. ...+.++.+++..+.|++
T Consensus 81 ~K~~~A~~~GADtiMDLSt--G---gdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie~qa~dGVD 155 (423)
T TIGR00190 81 EKALIAIKYGADTVMDLST--G---GDLDEIRKAILDAVPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAIEKQAKDGVD 155 (423)
T ss_pred HHHHHHHHcCCCeEeeccC--C---CCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCC
Confidence 4467889999999999862 1 122333332211111111112222111 11 112346677777788887
Q ss_pred EEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHH
Q 015110 192 GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 271 (413)
Q Consensus 192 ~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~ 271 (413)
.+.+.. . ..++.++.+++.+...-+=.+.-......+...+ +++ |-+ +...+
T Consensus 156 fmTiH~---------G----i~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~-~EN-----------Ply---e~fD~ 207 (423)
T TIGR00190 156 FMTIHA---------G----VLLEYVERLKRSGRITGIVSRGGAILAAWMLHHH-KEN-----------PLY---KNFDY 207 (423)
T ss_pred EEEEcc---------c----hhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcC-CcC-----------chH---HHHHH
Confidence 765531 1 2344555566666555555555555444444332 222 222 36788
Q ss_pred HHHHHhhcccCCCCCCceEEEEccCCh-------hhH--------HHHHHHHHHCCCCEEEEcccccccccc
Q 015110 272 LLTVAKDTRTDGPAEGAHLHIVHLSDA-------SSS--------LDLLMEAKTNGDSITVETCPHYLAFSA 328 (413)
Q Consensus 272 ~~~~a~~~~~~~~~~g~~vhi~H~s~~-------~~~--------~~~i~~ak~~G~~v~~e~~p~~l~l~~ 328 (413)
++++++++ ++-+.+...-.+ |++ =++.++|+++|+.|-+| -|-|.-++.
T Consensus 208 lLeI~~~y-------DVtlSLGDglRPG~i~DA~D~aQi~El~~lgeL~~rA~e~gVQvMVE-GPGHvPl~~ 271 (423)
T TIGR00190 208 ILEIAKEY-------DVTLSLGDGLRPGCIADATDRAQISELITLGELVERAREADVQCMVE-GPGHVPLDQ 271 (423)
T ss_pred HHHHHHHh-------CeeeeccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEE-CCCCCcHHH
Confidence 99999886 444443332110 010 16778899999999998 777776653
No 142
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=91.24 E-value=0.081 Score=52.31 Aligned_cols=20 Identities=25% Similarity=0.121 Sum_probs=14.0
Q ss_pred HHHHHHHhcCCccEEcCCCC
Q 015110 351 EKLWEALMDGHIDMLSSDHS 370 (413)
Q Consensus 351 ~~L~~~l~~G~i~~i~sDh~ 370 (413)
..+...+..|...+++||+.
T Consensus 316 ~~~~~~~~~Gv~v~~gsD~p 335 (404)
T PF07969_consen 316 YPIRSLLDAGVRVALGSDAP 335 (404)
T ss_dssp THHHHHHHCTTEEEE--TTT
T ss_pred hHHHHHHhccCceecCcCCc
Confidence 44667788899999999974
No 143
>PTZ00124 adenosine deaminase; Provisional
Probab=90.91 E-value=8.1 Score=37.66 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCCCEEEecC
Q 015110 211 SHIKEGLSVLARYKRPLLVHAE 232 (413)
Q Consensus 211 ~~l~~~~~~A~~~g~~v~~H~e 232 (413)
..+..+++.|++.|+++.+|+-
T Consensus 206 ~~f~~~f~~Ar~~Gl~~t~HaG 227 (362)
T PTZ00124 206 KPFKDIFDYVREAGVNLTVHAG 227 (362)
T ss_pred HHHHHHHHHHHHCCCCEEEEeC
Confidence 4578899999999999999984
No 144
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=90.52 E-value=9.6 Score=36.16 Aligned_cols=24 Identities=13% Similarity=0.009 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHhcC-CCEEEecC
Q 015110 209 NASHIKEGLSVLARYK-RPLLVHAE 232 (413)
Q Consensus 209 ~~~~l~~~~~~A~~~g-~~v~~H~e 232 (413)
+...+..+++.|++.| +++.+|+.
T Consensus 151 ~~~~f~~~~~~ar~~g~l~~t~HaG 175 (305)
T cd00443 151 PLRDFYSYYEYARRLGLLGLTLHCG 175 (305)
T ss_pred CHHHHHHHHHHHHHcCCcceEEeec
Confidence 5678899999999999 99999984
No 145
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=90.24 E-value=1.2 Score=43.18 Aligned_cols=110 Identities=19% Similarity=0.201 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHhcC--CCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCC
Q 015110 209 NASHIKEGLSVLARYK--RPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 286 (413)
Q Consensus 209 ~~~~l~~~~~~A~~~g--~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~ 286 (413)
+...+..+++.|++.| +++.+|+-.... . ...+ ...|..++.+..+
T Consensus 177 ~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~-------------~-------~~~~----~~~v~~al~lg~~-------- 224 (345)
T cd01321 177 PLLDFLPQLLWFPKQCAEIPFFFHAGETNG-------------D-------GTET----DENLVDALLLNTK-------- 224 (345)
T ss_pred CHHHHHHHHHHHHHhCCCCceEeecCCCcC-------------C-------CCCC----hhHHHHHHHhCCC--------
Confidence 5678889999999999 999999842210 0 0000 0134444433211
Q ss_pred CceEEEEccCChhhHHHHHHHHHHCCCCEEEEcccc-ccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEE
Q 015110 287 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPH-YLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML 365 (413)
Q Consensus 287 g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~-~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i 365 (413)
-|.|....-+.-++++..++++ |.+|+||. ++.+ +..|.++. --+...++.|+..+|
T Consensus 225 ----RIGHG~~~~~dp~ll~~l~~~~--I~lEvCPtSN~~~------------~~v~~~~~----HPl~~ll~~Gv~vti 282 (345)
T cd01321 225 ----RIGHGFALPKHPLLMDLVKKKN--IAIEVCPISNQVL------------GLVSDLRN----HPAAALLARGVPVVI 282 (345)
T ss_pred ----cCccccccCcCHHHHHHHHHcC--CeEEECcchhhhh------------ccccchhh----ChHHHHHHCCCeEEE
Confidence 2444432212245677777775 67789996 2221 11222221 124556777999999
Q ss_pred cCCCCCC
Q 015110 366 SSDHSPT 372 (413)
Q Consensus 366 ~sDh~p~ 372 (413)
+||....
T Consensus 283 nTDDp~~ 289 (345)
T cd01321 283 SSDDPGF 289 (345)
T ss_pred eCCCcch
Confidence 9999654
No 146
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=89.76 E-value=16 Score=35.78 Aligned_cols=63 Identities=21% Similarity=0.166 Sum_probs=39.4
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEE--EEccC-ChhhHHHHHHHHHH-CCCCEEEEccccccccc
Q 015110 256 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLH--IVHLS-DASSSLDLLMEAKT-NGDSITVETCPHYLAFS 327 (413)
Q Consensus 256 ~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vh--i~H~s-~~~~~~~~i~~ak~-~G~~v~~e~~p~~l~l~ 327 (413)
+..++|...+...+.+.+..++.. +.+.+ ..|++ .. .+++.+...++ .|++++ ++|++|+.++
T Consensus 161 ~~~~~~~~~~~~~~~~~a~~~~~~-------~~~~~~~~vh~~~~~-~~~~~i~~~~~~~G~~~~-~~~~~~~~~~ 227 (387)
T cd01308 161 HRSSQPTVEELARIAAEARVGGLL-------GGKAGIVHIHLGDGK-RALSPIFELIEETEIPIT-QFLPTHINRT 227 (387)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHh-------cCCCcEEEEEeCCch-HHHHHHHHHHHhcCCCcc-eeECCcccCC
Confidence 334567777776776666665532 33333 33444 33 56777755444 499998 9999988654
No 147
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=89.19 E-value=4.2 Score=38.98 Aligned_cols=118 Identities=21% Similarity=0.263 Sum_probs=60.0
Q ss_pred CCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHH
Q 015110 189 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 268 (413)
Q Consensus 189 G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~ 268 (413)
+++|+-+.-.+. ......+..+++.|++.|+++.+|+-.... ...
T Consensus 164 ~vvG~dl~g~E~------~~~~~~~~~~~~~a~~~gl~~t~HaGE~~~-----------------------------~~~ 208 (331)
T PF00962_consen 164 GVVGFDLAGDED------GGPPLKFAPAFRKAREAGLKLTVHAGETGG-----------------------------PEH 208 (331)
T ss_dssp TEEEEEEESSTT------STTGGGHHHHHHHHHHTT-EEEEEESSSST-----------------------------HHH
T ss_pred eEEEEEecCCcc------cCchHHHHHHHhhhcccceeecceecccCC-----------------------------ccc
Confidence 567776542221 123334888999999999999999832211 012
Q ss_pred HHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEcccc-ccccccccCCCCCcceEEcCCCCCh
Q 015110 269 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPH-YLAFSAEEIPDGDTRFKCAPPIRDA 347 (413)
Q Consensus 269 v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~-~l~l~~~~~~~~~~~~k~~Pplr~~ 347 (413)
+..++... |.. -|.|....-+.-++++..+++ .|.+|+||. ++.+. .+ +.++.
T Consensus 209 ~~~ai~~l----------~~~-RIgHG~~~~~~p~l~~~~~~~--~I~iEvcptSN~~~~--~~----------~~~~~- 262 (331)
T PF00962_consen 209 IRDAILLL----------GAD-RIGHGVRLIKDPELLELLAER--QIPIEVCPTSNVQLG--AV----------PSYEE- 262 (331)
T ss_dssp HHHHHHTS----------T-S-EEEE-GGGGGSHHHHHHHHHT--T-EEEE-HHHHHHTT--SS----------STGGG-
T ss_pred ccchhhhc----------cce-eecchhhhhhhhHHHHHHHHh--CCCeeeCCCcCcccc--ee----------eecch-
Confidence 33444431 211 466655321334567777776 578889996 22221 01 11111
Q ss_pred hcHHHHHHHHhcCCccEEcCCCC
Q 015110 348 ANKEKLWEALMDGHIDMLSSDHS 370 (413)
Q Consensus 348 ~~~~~L~~~l~~G~i~~i~sDh~ 370 (413)
--+.+.++.|...+|+||.-
T Consensus 263 ---hP~~~~~~~gv~v~i~TDd~ 282 (331)
T PF00962_consen 263 ---HPLRKLLDAGVPVSINTDDP 282 (331)
T ss_dssp ----CHHHHHHTT-EEEE--BSH
T ss_pred ---hHHHHHHHcCCceeccCCCc
Confidence 12455567799999999983
No 148
>PRK01060 endonuclease IV; Provisional
Probab=89.13 E-value=15 Score=34.12 Aligned_cols=118 Identities=19% Similarity=0.153 Sum_probs=73.0
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC---EEEecCCh-hhchhhHhhccCcCCcccc
Q 015110 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP---LLVHAEME-KGSERHVKLEDDTLDTRSY 253 (413)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~---v~~H~e~~-~~~~~~~~~~~~~~~~~~~ 253 (413)
..+.++.+.+.|.+++.++...+..-..+..+++.+.++-+.++++|+. +.+|+... ...
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~---------------- 77 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILVHAPYLINLG---------------- 77 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEEecceEecCC----------------
Confidence 3456777788999999987653321112245788889999999999998 88887421 110
Q ss_pred ccCCCCCchH--HHHHHHHHHHHHHhhcccCCCCCCceEEEEccCC------hhhHH----HHHHHH--HHCCCCEEEEc
Q 015110 254 STYLKTRPPS--WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD------ASSSL----DLLMEA--KTNGDSITVET 319 (413)
Q Consensus 254 ~~~~~~~p~~--~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~------~~~~~----~~i~~a--k~~G~~v~~e~ 319 (413)
..-|.. .....+.+.+++|++. |++..+.|... .++.+ +.++.+ .+.|+.+..|.
T Consensus 78 ----~~d~~~r~~s~~~~~~~i~~A~~l-------ga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn 146 (281)
T PRK01060 78 ----NPNKEILEKSRDFLIQEIERCAAL-------GAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQGVTIVLEN 146 (281)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHc-------CCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 001111 1235677888888875 77777777642 10122 233332 45688899988
Q ss_pred ccc
Q 015110 320 CPH 322 (413)
Q Consensus 320 ~p~ 322 (413)
.|.
T Consensus 147 ~~~ 149 (281)
T PRK01060 147 TAG 149 (281)
T ss_pred CCC
Confidence 764
No 149
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=88.98 E-value=15 Score=35.37 Aligned_cols=168 Identities=15% Similarity=0.044 Sum_probs=89.5
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceec-------C-CchhhHHHHHHHHHcCCc
Q 015110 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV-------P-ENAYNASALEALLNAGVL 191 (413)
Q Consensus 120 ~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~l~~l~~~G~~ 191 (413)
.-.+.|.+.|.-|+.|++. . .....++.++-....-+.-.+..|..+. . ...+.+..+++.++.|++
T Consensus 82 eK~~~A~~~GADtvMDLSt--G---gdl~eiR~~ii~~s~vPvGTVPIYqA~~~~~~~~~~~t~d~~~~~v~~qa~~GVd 156 (432)
T COG0422 82 EKAVWAIKWGADTVMDLST--G---GDLHEIREWIIRNSPVPVGTVPIYQALEEVNGKVEDLTEDDFFDTVEKQAEQGVD 156 (432)
T ss_pred HHHHHHHHhCcceeEeccc--C---CCHHHHHHHHHhcCCCCcCCchHHHHHHHHhcchhhCCHHHHHHHHHHHHHhCCc
Confidence 3466789999999999861 1 1223333332221111111122221110 0 112345667777778877
Q ss_pred EEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHH
Q 015110 192 GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 271 (413)
Q Consensus 192 ~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~ 271 (413)
.+.+.. ...++.++..++.|...-+=.+.-..+...+...+ .+ .|-+ +....
T Consensus 157 fmTIHa-------------GV~~~~~~~~~~~~R~~giVSRGGsi~a~Wml~~~-~E-----------Nply---~~fd~ 208 (432)
T COG0422 157 FMTIHA-------------GVLLEYVPRTKRSGRVTGIVSRGGSIMAAWMLHNH-KE-----------NPLY---EHFDE 208 (432)
T ss_pred EEEeeh-------------hhhHHHHHHHHhcCceeeeeccchHHHHHHHHHcC-Cc-----------Cchh---hhHHH
Confidence 665431 23445566666666666665666665554444332 11 1222 35678
Q ss_pred HHHHHhhcccCCCCCCceEEEEccC---------Ch------hhHHHHHHHHHHCCCCEEEEcccccccccc
Q 015110 272 LLTVAKDTRTDGPAEGAHLHIVHLS---------DA------SSSLDLLMEAKTNGDSITVETCPHYLAFSA 328 (413)
Q Consensus 272 ~~~~a~~~~~~~~~~g~~vhi~H~s---------~~------~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~ 328 (413)
++++++++ ++-+.+...- .. -.--++.+.|++.|+.|-+| -|.|.-+++
T Consensus 209 lleI~k~y-------DvtlSLGDglRPG~i~DA~D~aQ~~EL~tlgeL~krA~~~gVQvmvE-GPGHvpl~~ 272 (432)
T COG0422 209 LLEIFKEY-------DVTLSLGDGLRPGCIADANDEAQFAELITLGELTKRAWEAGVQVMVE-GPGHVPLNE 272 (432)
T ss_pred HHHHHHHh-------CeeeeccCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHcCCEEEEE-CCCcCcHHH
Confidence 88888876 3333332221 11 01126778899999999998 777777664
No 150
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=88.47 E-value=7 Score=37.82 Aligned_cols=52 Identities=12% Similarity=-0.049 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHcCCcEEEEeec-CCCCCCCCCCCHHHHHHHHHHHHhcCCCEE
Q 015110 177 YNASALEALLNAGVLGLKSFMC-PSGINDFPMTNASHIKEGLSVLARYKRPLL 228 (413)
Q Consensus 177 ~~~~~l~~l~~~G~~~ik~~~~-~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~ 228 (413)
..++.++.+++.|++.+-+... .........++.++++++++.|+++|+.+.
T Consensus 14 g~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~ 66 (347)
T COG0826 14 GNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVY 66 (347)
T ss_pred CCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEE
Confidence 4577888889999887644321 111112235788999999999999999643
No 151
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=87.74 E-value=8.5 Score=37.48 Aligned_cols=107 Identities=20% Similarity=0.162 Sum_probs=61.7
Q ss_pred hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-eeeEEeeceecC--CchhhHHHHHHHHHcCCcEEE
Q 015110 118 FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVP--ENAYNASALEALLNAGVLGLK 194 (413)
Q Consensus 118 ~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~l~~l~~~G~~~ik 194 (413)
+......+..+|++.++.+- ...+...++...+.++..+ +..........+ .-....+..+++.+.|+++|.
T Consensus 100 Ve~Fv~ka~~nGidvfRiFD-----AlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIc 174 (472)
T COG5016 100 VEKFVEKAAENGIDVFRIFD-----ALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSIC 174 (472)
T ss_pred HHHHHHHHHhcCCcEEEech-----hccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEE
Confidence 34567888999999998763 1122334444444443222 221111111111 112245667778888988764
Q ss_pred Ee-ecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015110 195 SF-MCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (413)
Q Consensus 195 ~~-~~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~ 236 (413)
+- | ....++...+++++..++ .++++.+|++....
T Consensus 175 iKDm-------aGlltP~~ayelVk~iK~~~~~pv~lHtH~TsG 211 (472)
T COG5016 175 IKDM-------AGLLTPYEAYELVKAIKKELPVPVELHTHATSG 211 (472)
T ss_pred eecc-------cccCChHHHHHHHHHHHHhcCCeeEEecccccc
Confidence 32 2 124677777888887774 78999999866553
No 152
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=87.68 E-value=20 Score=33.24 Aligned_cols=130 Identities=21% Similarity=0.152 Sum_probs=61.8
Q ss_pred eeeeeecccccCCCCCC------C------ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeee
Q 015110 97 MPGLIDVHAHLDDPGRT------E------WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD 164 (413)
Q Consensus 97 lPGlID~H~H~~~~~~~------~------~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (413)
+..+||+|.|+...+.. . .-.+......+-..||--.+-+-.+..+ .+....++...+....... -
T Consensus 6 ~~~~IDtH~Hl~~~~~~~~pw~~~~~~~~~d~~~~dY~~~~~~~gv~~~V~vq~~~~~-~D~~~e~~~v~~~~~~~g~-~ 83 (279)
T COG3618 6 PQMIIDTHAHLWDPGALPYPWLADYEALRRDYLFEDYLALLKAHGVSGGVLVQVNVDP-RDNEKELAFVAELAERHGG-I 83 (279)
T ss_pred cccccchhhhhhcccccCCCCCCcccccCCCCCHHHHHHHHHhcCcceeEEEecccCc-cchHHHHHHHHhhHHhhCc-e
Confidence 46789999999765311 0 0122233455566777665554323322 2222222322222222221 1
Q ss_pred EEeeceecCCchhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCCh
Q 015110 165 VGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME 234 (413)
Q Consensus 165 ~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~ 234 (413)
++. +....++..+.+++....-..|+...+.. .....+..+.+++.++..+++|+.+.++....
T Consensus 84 vg~---id~~~~e~~a~L~~~~~~~~~GvR~~l~~---~p~~~~~a~~~r~~~~rL~~~gl~fdl~~~~~ 147 (279)
T COG3618 84 VGV---IDECRPEFAAKLERARYPFFRGVRRNLHV---VPDGLFEAPAWRANVERLAKLGLHFDLQVDPH 147 (279)
T ss_pred EEE---EecCCchHHHHHHHhcccccceeeehhhc---CCccchhhHHHHHHHHHHHhcCCeEEEEeChh
Confidence 111 11111222333333331114444433211 01123444789999999999999998887543
No 153
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=87.34 E-value=14 Score=34.09 Aligned_cols=116 Identities=15% Similarity=0.111 Sum_probs=69.8
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCCh-hhchhhHhhccCcCCccccccCCC
Q 015110 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME-KGSERHVKLEDDTLDTRSYSTYLK 258 (413)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~-~~~~~~~~~~~~~~~~~~~~~~~~ 258 (413)
..++++.+.|..++.+++..+.....+..+.+.+.++.+.++++|+.+.+|+... ... .
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~h~p~~~nl~--------------------s 73 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSVHAPYLINLA--------------------S 73 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCceecCC--------------------C
Confidence 5677788889988888765542111123677788888888999999999997321 110 0
Q ss_pred CCchH--HHHHHHHHHHHHHhhcccCCCCCCceEEEEccCC-----hhhHH----HHHHHH--HHCCCCEEEEcccc
Q 015110 259 TRPPS--WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD-----ASSSL----DLLMEA--KTNGDSITVETCPH 322 (413)
Q Consensus 259 ~~p~~--~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~-----~~~~~----~~i~~a--k~~G~~v~~e~~p~ 322 (413)
..|.. .....+.+.+++|+.. |++..+.|... .++.+ +.+++. .+.|+.+..|..|.
T Consensus 74 ~d~~~r~~~~~~l~~~i~~A~~l-------Ga~~vv~h~g~~~~~~~e~~~~~~~~~l~~l~~~~~gv~l~lEn~~~ 143 (273)
T smart00518 74 PDKEKVEKSIERLIDEIKRCEEL-------GIKALVFHPGSYLKQSKEEALNRIIESLNEVIDETKGVVILLETTAG 143 (273)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHc-------CCCEEEEccccccCCCHHHHHHHHHHHHHHHHhccCCcEEEEeccCC
Confidence 11111 1234677788888864 77777777642 11222 222222 14678888887653
No 154
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=87.03 E-value=7.5 Score=35.94 Aligned_cols=68 Identities=9% Similarity=0.005 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHH---HHHHHHHHHhc-CCCEEEecCChhhchhhHhh
Q 015110 176 AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASH---IKEGLSVLARY-KRPLLVHAEMEKGSERHVKL 243 (413)
Q Consensus 176 ~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~---l~~~~~~A~~~-g~~v~~H~e~~~~~~~~~~~ 243 (413)
.+.++..++++++|+.-+.+....+..+..+....++ +..+++.+++. ++++++|..+.+.++..++.
T Consensus 23 ~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~al~~ 94 (257)
T TIGR01496 23 DKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAALEA 94 (257)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHc
Confidence 3456777788899999998853222111111223335 77777888876 99999999998877766654
No 155
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=85.88 E-value=9.6 Score=39.68 Aligned_cols=107 Identities=14% Similarity=0.078 Sum_probs=61.7
Q ss_pred HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCe-e--eEEeeceecCCchhhHHHHHHHHHcCCcEEEE
Q 015110 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY-V--DVGFWGGLVPENAYNASALEALLNAGVLGLKS 195 (413)
Q Consensus 119 ~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~ 195 (413)
+...+.+.++|+..++.+-. ......++..++.+...+. + .+++..+-........+..+++.+.|+..|.+
T Consensus 99 ~~~v~~a~~~Gidv~Rifd~-----lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~I 173 (596)
T PRK14042 99 RAFVKLAVNNGVDVFRVFDA-----LNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAI 173 (596)
T ss_pred HHHHHHHHHcCCCEEEEccc-----CcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 45678899999999987641 1223344444444432222 1 11121111111112244556667789887654
Q ss_pred eecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015110 196 FMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (413)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~ 236 (413)
- +.....++..+.++++..++ .++++.+|+++...
T Consensus 174 k------DtaG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~G 209 (596)
T PRK14042 174 K------DMAGLLTPTVTVELYAGLKQATGLPVHLHSHSTSG 209 (596)
T ss_pred C------CcccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCC
Confidence 2 12245788888888888775 68999999987764
No 156
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=85.14 E-value=10 Score=38.55 Aligned_cols=107 Identities=9% Similarity=0.041 Sum_probs=62.2
Q ss_pred HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-Cee--eEEeeceecCCchhhHHHHHHHHHcCCcEEEE
Q 015110 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYV--DVGFWGGLVPENAYNASALEALLNAGVLGLKS 195 (413)
Q Consensus 119 ~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~ 195 (413)
....+.+..+|+..++.+- + ......++..++..... ... .+.+..+.........+..+++.+.|+..|.+
T Consensus 100 ~~fv~~a~~~Gidi~RIfd----~-lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~I 174 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFD----A-LNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICI 174 (499)
T ss_pred HHHHHHHHHcCCCEEEEEe----c-CChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 4457788999999987653 1 12234444444444321 122 22222211111122345566677789987654
Q ss_pred eecCCCCCCCCCCCHHHHHHHHHHHHhc---CCCEEEecCChhh
Q 015110 196 FMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEMEKG 236 (413)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e~~~~ 236 (413)
- +.....++....++++..++. ++++.+|+++...
T Consensus 175 k------DtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~G 212 (499)
T PRK12330 175 K------DMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTG 212 (499)
T ss_pred C------CCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCC
Confidence 2 123457888999999888764 6999999987753
No 157
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=84.70 E-value=1.4 Score=38.93 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=28.2
Q ss_pred eeecccccCCC---CCCCccchHHHHHHHHhCCceEEEeCC
Q 015110 100 LIDVHAHLDDP---GRTEWEGFPSGTKAAAAGGITTLIDMP 137 (413)
Q Consensus 100 lID~H~H~~~~---~~~~~e~~~~~~~~al~~GvTTv~d~~ 137 (413)
+||+|+|+-.. |..+.|.....++.|.+.|||+++.-+
T Consensus 1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTs 41 (254)
T COG4464 1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATS 41 (254)
T ss_pred CccccccccCCCCCCCCcHHHHHHHHHHHHHcCceEEeecc
Confidence 58999998533 333444555668889999999999866
No 158
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=83.58 E-value=32 Score=31.94 Aligned_cols=52 Identities=15% Similarity=-0.004 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-CCCEEEec
Q 015110 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-KRPLLVHA 231 (413)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~ 231 (413)
+.++.+.+.|..++.+.+........+..+.+.+.++.+.+.++ ++.+.+|+
T Consensus 14 ~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~ 66 (279)
T cd00019 14 NALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHA 66 (279)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEc
Confidence 34555556676666554433211111123556667777777776 66677775
No 159
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=82.02 E-value=8.1 Score=37.21 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCC
Q 015110 208 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 287 (413)
Q Consensus 208 ~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g 287 (413)
...+.+..+++.++..|+.+.+||..... + +.+..++....
T Consensus 182 ~p~~~f~~~f~~~r~~gl~lt~HaGE~~~-------------~----------------~~i~~al~~~~---------- 222 (345)
T COG1816 182 YPPELFVSLFKLARDNGLKLTIHAGEAGG-------------P----------------ESIRDALDLLG---------- 222 (345)
T ss_pred CCHHHHHHHHHHHHHcCceEEEeccccCC-------------c----------------HHHHHHHHHhc----------
Confidence 46788999999999999999999953211 1 23444444332
Q ss_pred ceEEEEccCChhhHHHHHHHHHHCCCCEEEEcccc-ccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEEc
Q 015110 288 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPH-YLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 366 (413)
Q Consensus 288 ~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~-~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~ 366 (413)
+. -|.|.--..+.-++++....++ |-.++||- ++ ..++.+.++.-. +.+.+..|.-.+|.
T Consensus 223 ~~-rI~HGi~~~~d~~L~~~l~~~q--I~levCP~SNi------------~~~~v~~~~~hP----f~~~~d~Gv~VsLn 283 (345)
T COG1816 223 AE-RIGHGIRAIEDPELLYRLAERQ--IPLEVCPLSNI------------QLGVVPSLAKHP----FKKLFDAGVKVSLN 283 (345)
T ss_pred hh-hhccccccccCHHHHHHHHHhC--CeeEECCcchh------------hcccccchhhCc----HHHHHHcCCceEEc
Confidence 11 2555432213346777776775 45668994 11 122334443332 55667779999999
Q ss_pred CCCCCCC
Q 015110 367 SDHSPTV 373 (413)
Q Consensus 367 sDh~p~~ 373 (413)
||.-++.
T Consensus 284 TDdp~~f 290 (345)
T COG1816 284 TDDPLYF 290 (345)
T ss_pred CCChhhc
Confidence 9996654
No 160
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=81.60 E-value=58 Score=33.21 Aligned_cols=165 Identities=11% Similarity=-0.007 Sum_probs=80.6
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceec-------C-CchhhHHHHHHHHHcCCc
Q 015110 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV-------P-ENAYNASALEALLNAGVL 191 (413)
Q Consensus 120 ~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~l~~l~~~G~~ 191 (413)
.-+..+.+.|--|+.|+.. . .+...+++++-....-+.-.+..|..+. . .....++.+.+..+.|++
T Consensus 236 eK~~~A~~~GADtvMDLST--G---gdi~~~R~~Il~~spvPvGTVPiYqA~~~~~~~~~~lt~e~~~d~ieeQAeqGVD 310 (607)
T PRK09284 236 EKMVWATRWGADTVMDLST--G---KNIHETREWILRNSPVPIGTVPIYQALEKVNGVAEDLTWEIFRDTLIEQAEQGVD 310 (607)
T ss_pred HHHHHHHHcCCCEEEecCC--C---CCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCC
Confidence 3467789999999999862 1 1223333332221111111122221110 0 012235667777778887
Q ss_pred EEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHH
Q 015110 192 GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 271 (413)
Q Consensus 192 ~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~ 271 (413)
.+.+.. ...++.++.++ +...-+=.+.-.++...+.... .-.|-+ +..++
T Consensus 311 f~TIHa-------------Gv~~~~v~~~~--~R~tgIVSRGGSima~Wml~h~------------kENplY---e~FD~ 360 (607)
T PRK09284 311 YFTIHA-------------GVLLRYVPLTA--KRVTGIVSRGGSIMAKWCLAHH------------KENFLY---THFEE 360 (607)
T ss_pred EEEECh-------------hhHHHHHHHHh--CcccCcccCCHHHHHHHHHHcC------------CcCcHH---HHHHH
Confidence 765531 12233333333 2222222344444333333222 112222 46788
Q ss_pred HHHHHhhcccCCCCCCceEEEEccCCh-------hhH--------HHHHHHHHHCCCCEEEEccccccccc
Q 015110 272 LLTVAKDTRTDGPAEGAHLHIVHLSDA-------SSS--------LDLLMEAKTNGDSITVETCPHYLAFS 327 (413)
Q Consensus 272 ~~~~a~~~~~~~~~~g~~vhi~H~s~~-------~~~--------~~~i~~ak~~G~~v~~e~~p~~l~l~ 327 (413)
++++++++ ++-+.+...-.+ |++ =++.+.|++.|+.|-.| -|-|.-++
T Consensus 361 ileI~k~Y-------DVtlSLGDGLRPG~iaDA~D~AQ~~EL~tLGELt~rA~e~gVQVMIE-GPGHVPl~ 423 (607)
T PRK09284 361 ICEIMAAY-------DVSFSLGDGLRPGSIADANDEAQFAELETLGELTKIAWEHDVQVMIE-GPGHVPMH 423 (607)
T ss_pred HHHHHHHh-------CeeeeccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEE-CCCCCcHH
Confidence 89988876 444443332110 011 16777889999999988 67666554
No 161
>PLN02444 HMP-P synthase
Probab=80.51 E-value=68 Score=32.85 Aligned_cols=165 Identities=12% Similarity=-0.016 Sum_probs=81.0
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeecee-------cC-CchhhHHHHHHHHHcCCc
Q 015110 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL-------VP-ENAYNASALEALLNAGVL 191 (413)
Q Consensus 120 ~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~l~~l~~~G~~ 191 (413)
.-.+.+.+.|--|+.|+.. . .+...+++.+-....-+.-.+..|..+ .. ...+.++.+++..+.|++
T Consensus 241 eK~~~A~~~GADTvMDLST--G---gdi~~iR~~Il~~spvPVGTVPIYqA~~~~~~~~~~lt~d~~~d~ieeQaeqGVD 315 (642)
T PLN02444 241 YKLQWATMWGADTVMDLST--G---RHIHETREWILRNSPVPVGTVPIYQALEKVDGIAENLTWEVFRETLIEQAEQGVD 315 (642)
T ss_pred HHHHHHHHcCCCeEeeccC--C---CCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCC
Confidence 3467789999999999862 1 122333333222111111112222111 00 112345667777778887
Q ss_pred EEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHH
Q 015110 192 GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 271 (413)
Q Consensus 192 ~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~ 271 (413)
.+.+.. .. .++.++.++ +...-+=.+.-.++...+.... ++ .|-+ +..++
T Consensus 316 fmTIH~---------Gv----~~~~v~~~~--~R~tgIVSRGGSi~a~Wml~~~-kE-----------NPlY---e~FD~ 365 (642)
T PLN02444 316 YFTIHA---------GV----LLRYIPLTA--KRMTGIVSRGGSIHAKWCLAYH-KE-----------NFAY---EHWDD 365 (642)
T ss_pred EEEECh---------hh----HHHHHHHHh--CcccCceeCCcHHHHHHHHHcC-Cc-----------CchH---HHHHH
Confidence 765531 12 233333333 2222233344444333333222 11 1222 35788
Q ss_pred HHHHHhhcccCCCCCCceEEEEccCCh-------hhH--------HHHHHHHHHCCCCEEEEccccccccc
Q 015110 272 LLTVAKDTRTDGPAEGAHLHIVHLSDA-------SSS--------LDLLMEAKTNGDSITVETCPHYLAFS 327 (413)
Q Consensus 272 ~~~~a~~~~~~~~~~g~~vhi~H~s~~-------~~~--------~~~i~~ak~~G~~v~~e~~p~~l~l~ 327 (413)
++++++++ ++-+.+...-.+ |++ =++.+.|+++|+.|-.| -|-|.-++
T Consensus 366 ileI~k~Y-------DVtlSLGDGLRPG~iaDA~D~AQ~~EL~tLGELtkrA~e~gVQVMIE-GPGHVPl~ 428 (642)
T PLN02444 366 ILDICNQY-------DIALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWEKDVQVMNE-GPGHVPLH 428 (642)
T ss_pred HHHHHHHh-------CeeeeccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEE-CCCcCcHH
Confidence 89988876 444443332110 011 16778889999999988 67666554
No 162
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=78.67 E-value=6.4 Score=38.28 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhcccCCCCCCceEEEEccCCh-------hh--------HHHHHHHHHHCCCCEEEEcccccccccc
Q 015110 267 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-------SS--------SLDLLMEAKTNGDSITVETCPHYLAFSA 328 (413)
Q Consensus 267 ~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~-------~~--------~~~~i~~ak~~G~~v~~e~~p~~l~l~~ 328 (413)
+...+++++++++ ++-+.+...-.+ |+ --++.++|+++|+.|-+| -|-|.-++.
T Consensus 202 ~~fD~lLeI~k~y-------DVtLSLGDglRPG~i~Da~D~aQi~EL~~lgeL~~rA~e~gVQvMVE-GPGHVPl~~ 270 (420)
T PF01964_consen 202 EHFDRLLEIAKEY-------DVTLSLGDGLRPGCIADATDRAQIQELIILGELVKRAREAGVQVMVE-GPGHVPLNQ 270 (420)
T ss_dssp HTHHHHHHHHTTT-------T-EEEE--TT--SSGGGTT-HHHHHHHHHHHHHHHHHHHTT--EEEE-E-SB--GGG
T ss_pred HhHHHHHHHHHHh-------CeeEecccccCCCCcCCCCcHHHHHHHHHHHHHHHHHHHCCCeEEee-CCCCCCHHH
Confidence 3578999999976 666555543211 01 126778899999999999 587777664
No 163
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=78.19 E-value=13 Score=37.75 Aligned_cols=65 Identities=20% Similarity=0.115 Sum_probs=37.7
Q ss_pred EEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEEcCCCC
Q 015110 291 HIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS 370 (413)
Q Consensus 291 hi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~ 370 (413)
-|.|....-+.-++++..|+++ |.+|+||-. +-..+..+.++.- -+...++.|+..+|+||.-
T Consensus 351 RIGHG~~l~~~P~l~~~vke~~--I~lEvCP~S-----------N~~l~~v~~~~~H----Pl~~lla~Gvpv~InSDDP 413 (479)
T TIGR01431 351 RIGHGFALVKHPLVLQMLKERN--IAVEVNPIS-----------NQVLQLVADLRNH----PCAYLFADNYPMVISSDDP 413 (479)
T ss_pred cccCcccccCCHHHHHHHHHhC--CeEEECccc-----------hhhhcccCCcccC----hHHHHHHCCCcEEEeCCCc
Confidence 3566543212245677777774 678899951 1112233334332 2444577799999999995
Q ss_pred CC
Q 015110 371 PT 372 (413)
Q Consensus 371 p~ 372 (413)
..
T Consensus 414 ~~ 415 (479)
T TIGR01431 414 AF 415 (479)
T ss_pred cc
Confidence 44
No 164
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=78.01 E-value=33 Score=34.61 Aligned_cols=105 Identities=15% Similarity=0.102 Sum_probs=62.5
Q ss_pred HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-eeeEEeeceecCCch---h-hHHHHHHHHHcCCcEE
Q 015110 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVPENA---Y-NASALEALLNAGVLGL 193 (413)
Q Consensus 119 ~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~-~~~~l~~l~~~G~~~i 193 (413)
....+.+.++|+..++.+-. ....+.++..++.+...+ .+... .+++.++. + ..+..+++.+.|+..|
T Consensus 108 ~~fv~~a~~~Gidi~Rifd~-----lnd~~n~~~ai~~ak~~G~~~~~~--i~yt~sp~~t~~y~~~~a~~l~~~Gad~I 180 (468)
T PRK12581 108 DKFISLSAQNGIDVFRIFDA-----LNDPRNIQQALRAVKKTGKEAQLC--IAYTTSPVHTLNYYLSLVKELVEMGADSI 180 (468)
T ss_pred HHHHHHHHHCCCCEEEEccc-----CCCHHHHHHHHHHHHHcCCEEEEE--EEEEeCCcCcHHHHHHHHHHHHHcCCCEE
Confidence 34578889999999987641 123444555555444322 21111 11211111 1 2355666777899876
Q ss_pred EEeecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015110 194 KSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (413)
Q Consensus 194 k~~~~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~ 236 (413)
.+- +.....+++.+.++++..++ .++++.+|+++...
T Consensus 181 ~Ik------DtaG~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~G 218 (468)
T PRK12581 181 CIK------DMAGILTPKAAKELVSGIKAMTNLPLIVHTHATSG 218 (468)
T ss_pred EEC------CCCCCcCHHHHHHHHHHHHhccCCeEEEEeCCCCc
Confidence 542 12345788888888888876 46899999987764
No 165
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=76.73 E-value=63 Score=30.33 Aligned_cols=109 Identities=12% Similarity=0.086 Sum_probs=57.8
Q ss_pred CccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHH----HHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcC
Q 015110 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV----DAAEKRIYVDVGFWGGLVPENAYNASALEALLNAG 189 (413)
Q Consensus 114 ~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G 189 (413)
+.+.+....+..+..|+..++-.+....-...+.+.....+ +...++..+ ..+......+..+..+...+.|
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pv----i~gv~~~t~~~i~~a~~a~~~G 94 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPV----LAGAGYGTATAIAYAQAAEKAG 94 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCE----EEecCCCHHHHHHHHHHHHHhC
Confidence 34456667788899999999877621111222222222222 222222211 1222223344566667777789
Q ss_pred CcEEEEeecCCCCCCCCCCCHHHHHHHHHH-HHhcCCCEEEec
Q 015110 190 VLGLKSFMCPSGINDFPMTNASHIKEGLSV-LARYKRPLLVHA 231 (413)
Q Consensus 190 ~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~-A~~~g~~v~~H~ 231 (413)
++++-+.. + .+...+.+.+.+-++. +...++|+.+.-
T Consensus 95 ad~v~~~p-P----~y~~~~~~~i~~~f~~v~~~~~~pi~lYn 132 (289)
T cd00951 95 ADGILLLP-P----YLTEAPQEGLYAHVEAVCKSTDLGVIVYN 132 (289)
T ss_pred CCEEEECC-C----CCCCCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 99885531 1 1222466666665544 445688888864
No 166
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=76.14 E-value=46 Score=34.81 Aligned_cols=105 Identities=15% Similarity=0.102 Sum_probs=61.1
Q ss_pred HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCee---eEEeeceecC-Cchh-hHHHHHHHHHcCCcEE
Q 015110 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYV---DVGFWGGLVP-ENAY-NASALEALLNAGVLGL 193 (413)
Q Consensus 119 ~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~-~~~~l~~l~~~G~~~i 193 (413)
....+.+.++|+..++.+- . ......+...++.+...+.. .+.+.. .+ .+.+ ..+..+++.+.|+..+
T Consensus 100 ~~~v~~a~~~Gid~~rifd-~----lnd~~~~~~ai~~ak~~G~~~~~~i~yt~--~p~~~~~~~~~~a~~l~~~Gad~i 172 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVFD-A----MNDPRNLETALKAVRKVGAHAQGTLSYTT--SPVHTLQTWVDLAKQLEDMGVDSL 172 (593)
T ss_pred HHHHHHHHhcCCCEEEEee-e----CCcHHHHHHHHHHHHHcCCeEEEEEEEee--CCccCHHHHHHHHHHHHHcCCCEE
Confidence 4457788999999988663 1 11234444445554432221 122211 11 1112 2344556667898876
Q ss_pred EEeecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015110 194 KSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (413)
Q Consensus 194 k~~~~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~ 236 (413)
.+- +......+..+.++++..++ .++++.+|+++...
T Consensus 173 ~i~------Dt~G~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~G 210 (593)
T PRK14040 173 CIK------DMAGLLKPYAAYELVSRIKKRVDVPLHLHCHATTG 210 (593)
T ss_pred EEC------CCCCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCc
Confidence 442 12235788888888888775 68999999987764
No 167
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=75.63 E-value=63 Score=29.96 Aligned_cols=104 Identities=13% Similarity=-0.054 Sum_probs=59.4
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-eeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecC
Q 015110 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCP 199 (413)
Q Consensus 121 ~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~ 199 (413)
....+...|+..++-.. + ....+.+....+.++... .+.+.+......+.....+.++++.+.|+..+.+-
T Consensus 87 ~l~~a~~~gv~~iri~~----~-~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~--- 158 (266)
T cd07944 87 LLEPASGSVVDMIRVAF----H-KHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIV--- 158 (266)
T ss_pred HHHHHhcCCcCEEEEec----c-cccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEe---
Confidence 45667788888776442 1 123444444455544332 23333222111112223445556667898876542
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHh-cC--CCEEEecCChh
Q 015110 200 SGINDFPMTNASHIKEGLSVLAR-YK--RPLLVHAEMEK 235 (413)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~~A~~-~g--~~v~~H~e~~~ 235 (413)
+.....+++.+.++++..++ .+ +++.+|++|.-
T Consensus 159 ---DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~ 194 (266)
T cd07944 159 ---DSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNL 194 (266)
T ss_pred ---cCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 12346788999999988875 45 89999998764
No 168
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.04 E-value=71 Score=29.65 Aligned_cols=117 Identities=21% Similarity=0.113 Sum_probs=68.4
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC---EEEecCCh-hhchhhHhhccCcCCccccc
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP---LLVHAEME-KGSERHVKLEDDTLDTRSYS 254 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~---v~~H~e~~-~~~~~~~~~~~~~~~~~~~~ 254 (413)
.+.++++.+.|+.++.+|...+..-..+..+.+....+.+...++++. +.+|+--. ....
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~iNlas---------------- 77 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYLINLAS---------------- 77 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCeeeecCC----------------
Confidence 457888888999999998765421112335666666666777778775 78896432 1100
Q ss_pred cCCCCCchH--HHHHHHHHHHHHHhhcccCCCCCCceEEEEccCCh-----hhHHHH----HHHH--HHCCCCEEEEccc
Q 015110 255 TYLKTRPPS--WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDL----LMEA--KTNGDSITVETCP 321 (413)
Q Consensus 255 ~~~~~~p~~--~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~-----~~~~~~----i~~a--k~~G~~v~~e~~p 321 (413)
..+.. .-...+.+.+++|+.. |++..+.|..+. +++++. ++.. ...|+.+..|..|
T Consensus 78 ----~~~~~r~~sv~~~~~~i~~A~~l-------ga~~vv~H~G~~~~~~~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~ 146 (274)
T TIGR00587 78 ----PDEEKEEKSLDVLDEELKRCELL-------GIMLYNFHPGSALKCSEEEGLDNLIESLNVVIKETKIVTILLENMA 146 (274)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHc-------CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEEeCC
Confidence 01111 1134566777777764 787788887531 123222 2221 2346788888766
Q ss_pred c
Q 015110 322 H 322 (413)
Q Consensus 322 ~ 322 (413)
.
T Consensus 147 ~ 147 (274)
T TIGR00587 147 G 147 (274)
T ss_pred C
Confidence 3
No 169
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=74.09 E-value=63 Score=29.80 Aligned_cols=105 Identities=13% Similarity=0.031 Sum_probs=58.6
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-eeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeec
Q 015110 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMC 198 (413)
Q Consensus 120 ~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~ 198 (413)
.....++..|+..++-.. .. .....+....+.+...+ .+.+........+.....+.++++.+.|++.|.+ .
T Consensus 89 ~~i~~a~~~g~~~iri~~-~~----s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l--~ 161 (263)
T cd07943 89 DDLKMAADLGVDVVRVAT-HC----TEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYV--T 161 (263)
T ss_pred HHHHHHHHcCCCEEEEEe-ch----hhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEE--c
Confidence 346777888998876432 11 11233444444444332 2222221111111222344556666789887644 2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-cCC-CEEEecCChh
Q 015110 199 PSGINDFPMTNASHIKEGLSVLAR-YKR-PLLVHAEMEK 235 (413)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~~A~~-~g~-~v~~H~e~~~ 235 (413)
. ......++.+.++++..++ .+. ++.+|++|..
T Consensus 162 D----T~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~ 196 (263)
T cd07943 162 D----SAGAMLPDDVRERVRALREALDPTPVGFHGHNNL 196 (263)
T ss_pred C----CCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCc
Confidence 1 2346788999999998875 465 8999998764
No 170
>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]
Probab=73.79 E-value=37 Score=33.20 Aligned_cols=106 Identities=20% Similarity=0.196 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCc
Q 015110 209 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 288 (413)
Q Consensus 209 ~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~ 288 (413)
+...+..++..+.+.|+.+.+||..... + ..-++.++.+..-.
T Consensus 225 p~~~f~~vl~~~~~~gi~~t~HaGE~~~------------~----------------~~~v~~~LD~l~~~--------- 267 (399)
T KOG1097|consen 225 PLSLFLEVLAKAPAKGIHLTFHAGETNG------------G----------------ASVVKNALDLLGTE--------- 267 (399)
T ss_pred ChhhhHHHHHhhhhcCCcEEEEccccCC------------C----------------hHHHHHHHHhhCCc---------
Confidence 3446667777777799999999843210 0 12345555522211
Q ss_pred eEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCccEEcCC
Q 015110 289 HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSD 368 (413)
Q Consensus 289 ~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~~i~sD 368 (413)
.|.|.....+.-+++..+++++ |-.|+||..- ...++.+++|.- .+..-+++|+..+|+||
T Consensus 268 --RIGHG~~l~~dp~L~~~~k~~n--I~lEiCP~SN-----------~vl~~v~d~rnh----p~~~~~~~~vP~vI~sD 328 (399)
T KOG1097|consen 268 --RIGHGYFLTKDPELINLLKSRN--IALEICPISN-----------QVLGLVSDLRNH----PVARLLAAGVPVVINSD 328 (399)
T ss_pred --cccCceeccCCHHHHHHHHhcC--ceEEEccchh-----------hheecccccccc----HHHHHHhCCCCEEEeCC
Confidence 2455432102236788888885 5667999511 122333344333 23334667999999999
Q ss_pred CC
Q 015110 369 HS 370 (413)
Q Consensus 369 h~ 370 (413)
.-
T Consensus 329 DP 330 (399)
T KOG1097|consen 329 DP 330 (399)
T ss_pred Cc
Confidence 84
No 171
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=73.73 E-value=61 Score=31.24 Aligned_cols=105 Identities=8% Similarity=-0.018 Sum_probs=59.6
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCe-eeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeec
Q 015110 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY-VDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMC 198 (413)
Q Consensus 120 ~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~ 198 (413)
...+.+...|+..++-.. .. ...+.....++.++..+. +.+.+......+.....+.++.+.+.|+..+.+.
T Consensus 92 ~dl~~a~~~gvd~iri~~-~~----~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~-- 164 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVAT-HC----TEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVV-- 164 (337)
T ss_pred HHHHHHHHcCCCEEEEEE-ec----chHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeC--
Confidence 346778889999887543 11 112334444555443332 2222221111112222344555566798876442
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhc---CCCEEEecCChh
Q 015110 199 PSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEMEK 235 (413)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e~~~ 235 (413)
. ......++.+.+.++..++. ++++.+|+++.-
T Consensus 165 D----T~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hnnl 200 (337)
T PRK08195 165 D----SAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNL 200 (337)
T ss_pred C----CCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCc
Confidence 2 23467889999999988864 689999998754
No 172
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=72.25 E-value=1.1e+02 Score=30.47 Aligned_cols=132 Identities=14% Similarity=0.078 Sum_probs=78.1
Q ss_pred CeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCC---EEEecCCh-hh
Q 015110 161 IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP---LLVHAEME-KG 236 (413)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~---v~~H~e~~-~~ 236 (413)
..+-++.|.++..+ ....+.+..+.|+..|.+|...+-.-..+..+++.+.+..+.++++|+. +.+|+.-. ..
T Consensus 129 ~~~~iGaHvSiaGG---~~~a~~~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINL 205 (413)
T PTZ00372 129 SNVYIGAHVSASGG---VDNSPINAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINL 205 (413)
T ss_pred cCceEEEEEecccc---HHHHHHHHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecC
Confidence 34456666554322 2345677778899999998754321122446888999999999999763 78897532 11
Q ss_pred chhhHhhccCcCCccccccCCCCCchHHH--HHHHHHHHHHHhhcccCCCCCCceEEEEccCCh------hhHHHHHHHH
Q 015110 237 SERHVKLEDDTLDTRSYSTYLKTRPPSWE--EAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA------SSSLDLLMEA 308 (413)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~E--~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~------~~~~~~i~~a 308 (413)
+. ..|...+ ...+.+.++.|... |++..+.|-.+. +++++.+.++
T Consensus 206 AS--------------------pd~e~rekSv~~~~~eL~rA~~L-------Ga~~VV~HPGs~~~~~~~ee~i~~i~e~ 258 (413)
T PTZ00372 206 AN--------------------PDKEKREKSYDAFLDDLQRCEQL-------GIKLYNFHPGSTVGQCSKEEGIKNIADC 258 (413)
T ss_pred CC--------------------CCHHHHHHHHHHHHHHHHHHHHc-------CCCEEEECCCcCCCCCCHHHHHHHHHHH
Confidence 00 0111111 34566677777764 888888887541 1444333322
Q ss_pred ------HHCCCCEEEEcccc
Q 015110 309 ------KTNGDSITVETCPH 322 (413)
Q Consensus 309 ------k~~G~~v~~e~~p~ 322 (413)
+..|+.+..|.++.
T Consensus 259 L~~~la~~~gV~IlLENmag 278 (413)
T PTZ00372 259 INKAHEETKSVIIVLENTAG 278 (413)
T ss_pred HHHHHhCcCCCEEEEecCCC
Confidence 23466777777653
No 173
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=70.62 E-value=99 Score=35.18 Aligned_cols=107 Identities=20% Similarity=0.171 Sum_probs=61.1
Q ss_pred HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-Cee--eEEeeceecCC-----chh-hHHHHHHHHHcC
Q 015110 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYV--DVGFWGGLVPE-----NAY-NASALEALLNAG 189 (413)
Q Consensus 119 ~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~-----~~~-~~~~l~~l~~~G 189 (413)
+...+.+.++|+..++.+- .....+.+....+.+... ..+ .+.+.+.+.+. +.+ ..+..+++.+.|
T Consensus 628 ~~f~~~~~~~GidifrifD-----~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~G 702 (1143)
T TIGR01235 628 KYFVKQAAQGGIDIFRVFD-----SLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAG 702 (1143)
T ss_pred HHHHHHHHHcCCCEEEECc-----cCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcC
Confidence 3456788899999998763 112234444444444322 222 22222211111 111 234556677789
Q ss_pred CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015110 190 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (413)
Q Consensus 190 ~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~ 236 (413)
+..+.+- +.....++...+.+++..++ .++++.+|+++...
T Consensus 703 ad~I~ik------Dt~Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~G 744 (1143)
T TIGR01235 703 AHILGIK------DMAGLLKPAAAKLLIKALREKTDLPIHFHTHDTSG 744 (1143)
T ss_pred CCEEEEC------CCcCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 8866442 11235678888888888774 58999999987754
No 174
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=70.61 E-value=52 Score=33.14 Aligned_cols=107 Identities=15% Similarity=0.081 Sum_probs=60.5
Q ss_pred HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-eeeEEeeceecC-Cchh-hHHHHHHHHHcCCcEEEE
Q 015110 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVP-ENAY-NASALEALLNAGVLGLKS 195 (413)
Q Consensus 119 ~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~-~~~~l~~l~~~G~~~ik~ 195 (413)
....+.++++|+..++-+- ..+ ....+...++.+...+ .+...+.....+ .+.+ ..+..+++.+.|++.|.+
T Consensus 99 ~~~v~~A~~~Gvd~irif~-~ln----d~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i 173 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFD-ALN----DVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICI 173 (448)
T ss_pred HHHHHHHHHCCCCEEEEEE-ecC----cHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3456788999999887653 111 1123444444443222 222222111111 1112 245566677789887654
Q ss_pred eecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015110 196 FMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (413)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~ 236 (413)
- +.....++..+.++++..++ .++++.+|+++...
T Consensus 174 ~------Dt~G~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~G 209 (448)
T PRK12331 174 K------DMAGILTPYVAYELVKRIKEAVTVPLEVHTHATSG 209 (448)
T ss_pred c------CCCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 2 12245788888888888774 68999999987764
No 175
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=70.04 E-value=83 Score=31.85 Aligned_cols=107 Identities=16% Similarity=0.128 Sum_probs=60.7
Q ss_pred HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-CeeeEEeeceecC-Cchh-hHHHHHHHHHcCCcEEEE
Q 015110 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGGLVP-ENAY-NASALEALLNAGVLGLKS 195 (413)
Q Consensus 119 ~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~-~~~~l~~l~~~G~~~ik~ 195 (413)
....+.++++|+..++-+- . ......+....+.+... ..+.........+ .+.+ ..+..+++.+.|++.|.+
T Consensus 98 ~~fv~~A~~~Gvd~irif~-~----lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i 172 (467)
T PRK14041 98 ELFVKKVAEYGLDIIRIFD-A----LNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICI 172 (467)
T ss_pred HHHHHHHHHCCcCEEEEEE-e----CCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3447888999999887653 1 11234444444444322 2222111111111 1112 234556667789987644
Q ss_pred eecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015110 196 FMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (413)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~ 236 (413)
- +.....++..+.++++..++ .++++.+|+++...
T Consensus 173 ~------Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~G 208 (467)
T PRK14041 173 K------DMAGLLTPKRAYELVKALKKKFGVPVEVHSHCTTG 208 (467)
T ss_pred C------CccCCcCHHHHHHHHHHHHHhcCCceEEEecCCCC
Confidence 2 12245788888888888774 68999999987764
No 176
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=69.89 E-value=78 Score=33.08 Aligned_cols=107 Identities=18% Similarity=0.147 Sum_probs=61.8
Q ss_pred HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-CeeeEEeeceecC-Cc-hhhHHHHHHHHHcCCcEEEE
Q 015110 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGGLVP-EN-AYNASALEALLNAGVLGLKS 195 (413)
Q Consensus 119 ~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~-~~~~~~l~~l~~~G~~~ik~ 195 (413)
....+.++.+|+..++-+- .. .....+....+.+... ..+.+.......+ .+ ....+.++++.+.|+..+.+
T Consensus 94 ~~~v~~a~~~Gvd~irif~-~l----nd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i 168 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFD-AL----NDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICI 168 (582)
T ss_pred HHHHHHHHHCCCCEEEEEE-ec----CcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4457888999999887653 11 1123444444444322 2223221111112 11 22345566777789987644
Q ss_pred eecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015110 196 FMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (413)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~ 236 (413)
- +.....++..+.++++..++ .++++.+|+++...
T Consensus 169 ~------Dt~G~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~G 204 (582)
T TIGR01108 169 K------DMAGILTPKAAYELVSALKKRFGLPVHLHSHATTG 204 (582)
T ss_pred C------CCCCCcCHHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 2 12235788888888888775 58999999987764
No 177
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=67.87 E-value=1e+02 Score=29.65 Aligned_cols=103 Identities=12% Similarity=-0.010 Sum_probs=58.6
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCe-eeEEeeceecCCchh-hHHHHHHHHHcCCcEEEEeec
Q 015110 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY-VDVGFWGGLVPENAY-NASALEALLNAGVLGLKSFMC 198 (413)
Q Consensus 121 ~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~l~~l~~~G~~~ik~~~~ 198 (413)
..+.+...|+..++-.. . ....+.....++.++..+. +.+.+... ....++ ..+..+.+.+.|+..+.+.
T Consensus 92 dl~~a~~~gvd~iri~~-~----~~e~d~~~~~i~~ak~~G~~v~~~l~~s-~~~~~e~l~~~a~~~~~~Ga~~i~i~-- 163 (333)
T TIGR03217 92 DLKAAYDAGARTVRVAT-H----CTEADVSEQHIGMARELGMDTVGFLMMS-HMTPPEKLAEQAKLMESYGADCVYIV-- 163 (333)
T ss_pred HHHHHHHCCCCEEEEEe-c----cchHHHHHHHHHHHHHcCCeEEEEEEcc-cCCCHHHHHHHHHHHHhcCCCEEEEc--
Confidence 46778889999887543 1 1122334444555543332 22222211 112222 2344455556798876442
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-cC--CCEEEecCChh
Q 015110 199 PSGINDFPMTNASHIKEGLSVLAR-YK--RPLLVHAEMEK 235 (413)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~~A~~-~g--~~v~~H~e~~~ 235 (413)
. ......++.+.+.++..++ ++ +++.+|+++.-
T Consensus 164 D----T~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hnnl 199 (333)
T TIGR03217 164 D----SAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNL 199 (333)
T ss_pred c----CCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCC
Confidence 2 2346788899999988875 44 88999998754
No 178
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=66.74 E-value=88 Score=32.76 Aligned_cols=107 Identities=15% Similarity=0.073 Sum_probs=61.6
Q ss_pred HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-CeeeEEeeceecC--CchhhHHHHHHHHHcCCcEEEE
Q 015110 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGGLVP--ENAYNASALEALLNAGVLGLKS 195 (413)
Q Consensus 119 ~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~l~~l~~~G~~~ik~ 195 (413)
....+.+.++|+..++-+- . ......+....+.+... ..+.........+ ......+.++++.+.|+..|.+
T Consensus 99 ~~~v~~A~~~Gvd~irif~-~----lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i 173 (592)
T PRK09282 99 EKFVEKAAENGIDIFRIFD-A----LNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICI 173 (592)
T ss_pred HHHHHHHHHCCCCEEEEEE-e----cChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3457788999999887653 1 11223444444444322 2222221111111 1122345666777889987644
Q ss_pred eecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015110 196 FMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (413)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~ 236 (413)
- . ......+..+.++++..++ .++++.+|+++...
T Consensus 174 ~--D----t~G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~G 209 (592)
T PRK09282 174 K--D----MAGLLTPYAAYELVKALKEEVDLPVQLHSHCTSG 209 (592)
T ss_pred C--C----cCCCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 2 1 1235688888888888775 58999999987764
No 179
>PRK15108 biotin synthase; Provisional
Probab=64.38 E-value=1e+02 Score=29.74 Aligned_cols=110 Identities=15% Similarity=0.055 Sum_probs=64.6
Q ss_pred CccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEE
Q 015110 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGL 193 (413)
Q Consensus 114 ~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~i 193 (413)
+.+.+...++.+...|++.+.-......|.....+.+...++.++... +......+ ....+.++++.++|++.+
T Consensus 77 s~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~-i~v~~s~G-----~ls~e~l~~LkeAGld~~ 150 (345)
T PRK15108 77 EVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMG-LETCMTLG-----TLSESQAQRLANAGLDYY 150 (345)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCC-CEEEEeCC-----cCCHHHHHHHHHcCCCEE
Confidence 345666677777889999986532112343344455555555554321 22222111 122567888889999876
Q ss_pred EEeecCCCCCCC----CCCCHHHHHHHHHHHHhcCCCEEEe
Q 015110 194 KSFMCPSGINDF----PMTNASHIKEGLSVLARYKRPLLVH 230 (413)
Q Consensus 194 k~~~~~~~~~~~----~~~~~~~l~~~~~~A~~~g~~v~~H 230 (413)
-+.+... ...+ +.-+.+...+.++.|++.|+.+..|
T Consensus 151 n~~leT~-p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg 190 (345)
T PRK15108 151 NHNLDTS-PEFYGNIITTRTYQERLDTLEKVRDAGIKVCSG 190 (345)
T ss_pred eeccccC-hHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeE
Confidence 5543221 0111 1236778888999999999988766
No 180
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=63.30 E-value=75 Score=29.61 Aligned_cols=106 Identities=13% Similarity=0.024 Sum_probs=59.8
Q ss_pred HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-eeeEEeecee-cCCchh-hHHHHHHHHHcCCcEEEE
Q 015110 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGL-VPENAY-NASALEALLNAGVLGLKS 195 (413)
Q Consensus 119 ~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~-~~~~l~~l~~~G~~~ik~ 195 (413)
....+.+...|+..++-.. + ....+.+....+.++... .+.+...... ...+.+ ..+.++++.+.|+..+.+
T Consensus 94 ~~di~~~~~~g~~~iri~~----~-~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l 168 (275)
T cd07937 94 ELFVEKAAKNGIDIFRIFD----A-LNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICI 168 (275)
T ss_pred HHHHHHHHHcCCCEEEEee----c-CChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3445677888988876543 1 122344554455554333 2222111101 111222 234555666789887654
Q ss_pred eecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChh
Q 015110 196 FMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEK 235 (413)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~ 235 (413)
- +.....+++.+..+++..++ .++++.+|++|..
T Consensus 169 ~------DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~ 203 (275)
T cd07937 169 K------DMAGLLTPYAAYELVKALKKEVGLPIHLHTHDTS 203 (275)
T ss_pred c------CCCCCCCHHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 2 12345788889988888875 5789999998764
No 181
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=63.27 E-value=1.4e+02 Score=28.31 Aligned_cols=108 Identities=12% Similarity=0.064 Sum_probs=57.2
Q ss_pred ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHH----HHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCC
Q 015110 115 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD----AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGV 190 (413)
Q Consensus 115 ~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ 190 (413)
.+.+....+..+..||..++-.+....-...+.+......+ ...++. ....+......+.++..+...+.|+
T Consensus 27 ~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~----pvi~gv~~~t~~~i~~~~~a~~~Ga 102 (303)
T PRK03620 27 EAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRV----PVIAGAGGGTAQAIEYAQAAERAGA 102 (303)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCC----cEEEecCCCHHHHHHHHHHHHHhCC
Confidence 34556667778899999998775211112223322222222 222222 1122222233455666777777899
Q ss_pred cEEEEeecCCCCCCCCCCCHHHHHHHHHH-HHhcCCCEEEec
Q 015110 191 LGLKSFMCPSGINDFPMTNASHIKEGLSV-LARYKRPLLVHA 231 (413)
Q Consensus 191 ~~ik~~~~~~~~~~~~~~~~~~l~~~~~~-A~~~g~~v~~H~ 231 (413)
+++-+.. + .+...+.+.+.+-++. +...++|+.+.-
T Consensus 103 dav~~~p-P----~y~~~~~~~i~~~f~~va~~~~lpi~lYn 139 (303)
T PRK03620 103 DGILLLP-P----YLTEAPQEGLAAHVEAVCKSTDLGVIVYN 139 (303)
T ss_pred CEEEECC-C----CCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 9885531 1 1222356666665555 445688888764
No 182
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=63.17 E-value=9.6 Score=35.46 Aligned_cols=112 Identities=21% Similarity=0.101 Sum_probs=58.3
Q ss_pred cchHHHHHHHHhCCceEEEe-CCCCC---CC-----CCCcHHHHHHHHHHHhcCCeeeEEeeceecC------CchhhHH
Q 015110 116 EGFPSGTKAAAAGGITTLID-MPLNS---DP-----STISTETLKLKVDAAEKRIYVDVGFWGGLVP------ENAYNAS 180 (413)
Q Consensus 116 e~~~~~~~~al~~GvTTv~d-~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 180 (413)
+.......-|.+.|+-.++. -+... .. .......+.+..+-++.+. +.+-++..... -..+..+
T Consensus 32 ~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~Kg-Vgi~lw~~~~~~~~~~~~~~~~~~ 110 (273)
T PF10566_consen 32 ETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKG-VGIWLWYHSETGGNVANLEKQLDE 110 (273)
T ss_dssp HHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT--EEEEEEECCHTTBHHHHHCCHHH
T ss_pred HHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcC-CCEEEEEeCCcchhhHhHHHHHHH
Confidence 34445567788899887754 33110 00 0011233444444444442 23333322111 0112245
Q ss_pred HHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015110 181 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (413)
Q Consensus 181 ~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e 232 (413)
.++.+.+-|+.++|+-+-.+ ..+.--+..+++++.|+++++.|.+|-.
T Consensus 111 ~f~~~~~~Gv~GvKidF~~~----d~Q~~v~~y~~i~~~AA~~~LmvnfHg~ 158 (273)
T PF10566_consen 111 AFKLYAKWGVKGVKIDFMDR----DDQEMVNWYEDILEDAAEYKLMVNFHGA 158 (273)
T ss_dssp HHHHHHHCTEEEEEEE--SS----TSHHHHHHHHHHHHHHHHTT-EEEETTS
T ss_pred HHHHHHHcCCCEEeeCcCCC----CCHHHHHHHHHHHHHHHHcCcEEEecCC
Confidence 67777789999999843221 1233456788999999999999999953
No 183
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=62.68 E-value=1.3e+02 Score=28.40 Aligned_cols=109 Identities=10% Similarity=0.072 Sum_probs=56.8
Q ss_pred CccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHH----HHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcC
Q 015110 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV----DAAEKRIYVDVGFWGGLVPENAYNASALEALLNAG 189 (413)
Q Consensus 114 ~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G 189 (413)
+.+.+....+..+..||..++-.+....-...+.+...... +...++..+ ..+......+.++..+...+.|
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pv----i~gv~~~t~~ai~~a~~a~~~G 99 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPV----YTGVGGNTSDAIEIARLAEKAG 99 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcE----EEecCccHHHHHHHHHHHHHhC
Confidence 34556677788899999999876521111122232222222 222232221 1222222334566666677789
Q ss_pred CcEEEEeecCCCCCCCCCCCHHHHHHHHHH-HHhcCCCEEEec
Q 015110 190 VLGLKSFMCPSGINDFPMTNASHIKEGLSV-LARYKRPLLVHA 231 (413)
Q Consensus 190 ~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~-A~~~g~~v~~H~ 231 (413)
++++-+. .+ .+...+.+.+.+-++. +...++|+.+.-
T Consensus 100 adav~~~-pP----~y~~~s~~~i~~~f~~v~~a~~~pvilYn 137 (296)
T TIGR03249 100 ADGYLLL-PP----YLINGEQEGLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred CCEEEEC-CC----CCCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 9988553 22 1122355665555544 445678877753
No 184
>PLN02417 dihydrodipicolinate synthase
Probab=62.23 E-value=1.3e+02 Score=27.96 Aligned_cols=110 Identities=12% Similarity=0.086 Sum_probs=57.3
Q ss_pred ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecC-CchhhHHHHHHHHHcCCcEE
Q 015110 115 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP-ENAYNASALEALLNAGVLGL 193 (413)
Q Consensus 115 ~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~G~~~i 193 (413)
.+.+....+..+..|+..++-.+....-...+.+......+.......-.+....+... ...+.++..+...+.|++++
T Consensus 21 ~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav 100 (280)
T PLN02417 21 LEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAA 100 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEE
Confidence 34556667778899999998775211111222222222222221110001222222222 23345666667778899987
Q ss_pred EEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015110 194 KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 230 (413)
Q Consensus 194 k~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H 230 (413)
-+.. | .+...+.+++.+-++...+.. |+.+.
T Consensus 101 ~~~~-P----~y~~~~~~~i~~~f~~va~~~-pi~lY 131 (280)
T PLN02417 101 LHIN-P----YYGKTSQEGLIKHFETVLDMG-PTIIY 131 (280)
T ss_pred EEcC-C----ccCCCCHHHHHHHHHHHHhhC-CEEEE
Confidence 6532 1 122346777777777766666 87765
No 185
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=61.84 E-value=91 Score=30.61 Aligned_cols=52 Identities=17% Similarity=0.147 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~ 236 (413)
.+.++.+.+.|+..|.+. . .....+++++.++++..++ .++++.+|++|...
T Consensus 148 ~~~~~~~~~~Ga~~I~l~--D----T~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~G 200 (378)
T PRK11858 148 IEFAKAAEEAGADRVRFC--D----TVGILDPFTMYELVKELVEAVDIPIEVHCHNDFG 200 (378)
T ss_pred HHHHHHHHhCCCCEEEEe--c----cCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCcC
Confidence 344555566888876542 1 2245788888888887764 48999999987653
No 186
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=61.67 E-value=33 Score=31.36 Aligned_cols=98 Identities=16% Similarity=0.076 Sum_probs=54.7
Q ss_pred cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHH
Q 015110 188 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 267 (413)
Q Consensus 188 ~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~ 267 (413)
.-++.+|+.+..+ ..++.+.+++.++.++++|+.+..=---.+.+ .. ..
T Consensus 36 ~yID~~K~g~Gt~-----~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a---~~-----------------------q~ 84 (244)
T PF02679_consen 36 DYIDFLKFGWGTS-----ALYPEEILKEKIDLAHSHGVYVYPGGTLFEVA---YQ-----------------------QG 84 (244)
T ss_dssp GG-SEEEE-TTGG-----GGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHH---HH-----------------------TT
T ss_pred hhccEEEecCcee-----eecCHHHHHHHHHHHHHcCCeEeCCcHHHHHH---Hh-----------------------cC
Confidence 3456667654321 24566788999999999988876531100100 00 12
Q ss_pred HHHHHHHHHhhcccCCCCCCceEEEEccCC---hhhHHHHHHHHHHCCCCEEEEcccc
Q 015110 268 AIRELLTVAKDTRTDGPAEGAHLHIVHLSD---ASSSLDLLMEAKTNGDSITVETCPH 322 (413)
Q Consensus 268 ~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~---~~~~~~~i~~ak~~G~~v~~e~~p~ 322 (413)
.+.+.++.+++.|+. .+.|+-.+. .++-.++|+.++++|..|..|+-..
T Consensus 85 ~~~~yl~~~k~lGf~------~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG~K 136 (244)
T PF02679_consen 85 KFDEYLEECKELGFD------AIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVGKK 136 (244)
T ss_dssp -HHHHHHHHHHCT-S------EEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES-S
T ss_pred hHHHHHHHHHHcCCC------EEEecCCceeCCHHHHHHHHHHHHHCCCEEeecccCC
Confidence 466777777776432 245555442 1355688999999999999888653
No 187
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=60.95 E-value=11 Score=31.93 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=24.9
Q ss_pred eecccccCCCCCCCccchHHHHHHHHhCCceEEEeC
Q 015110 101 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDM 136 (413)
Q Consensus 101 ID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~ 136 (413)
||.|+|...+............+.|.+.|++++.-.
T Consensus 1 iDlH~HT~~s~~dg~~~~~e~v~~A~~~Gl~~i~iT 36 (175)
T PF02811_consen 1 IDLHVHTKYSILDGKDSPEEYVEQAKEKGLDAIAIT 36 (175)
T ss_dssp EEEEB--TTTSSTSSSSHHHHHHHHHHTTESEEEEE
T ss_pred CCccccccCcchhhcCCHHHHHHHHHHcCCCEEEEc
Confidence 799999987623333456677899999999988654
No 188
>PRK08392 hypothetical protein; Provisional
Probab=60.82 E-value=1.2e+02 Score=26.91 Aligned_cols=177 Identities=13% Similarity=0.099 Sum_probs=85.5
Q ss_pred eecccccCCCCCCCccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHH---HHhcCCeeeE--EeeceecCCc
Q 015110 101 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD---AAEKRIYVDV--GFWGGLVPEN 175 (413)
Q Consensus 101 ID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~ 175 (413)
||.|+|...+. .........+.|.+.|++.+.---. .+.. ....+..+++ .......+.+ +.-..+.+..
T Consensus 1 ~D~H~HT~~sd--~~~~~~e~v~~A~~~Gl~~i~iTdH--~~~~-~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~~~~ 75 (215)
T PRK08392 1 MDLHTHTVYSD--GIGSVRDNIAEAERKGLRLVGISDH--IHYF-TPSKFNAYINEIRQWGEESEIVVLAGIEANITPNG 75 (215)
T ss_pred CccccCCCCcC--CcCCHHHHHHHHHHcCCCEEEEccC--CCcc-chhhHHHHHHHHHHHhhccCceEEEeEEeeecCCc
Confidence 69999987652 2334667788999999998853321 1111 1122222221 1111111222 2222222221
Q ss_pred hhhHHHHHHHHHcCCcEE--EEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCcccc
Q 015110 176 AYNASALEALLNAGVLGL--KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 253 (413)
Q Consensus 176 ~~~~~~l~~l~~~G~~~i--k~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~ 253 (413)
.+...++.+ ..+.+ ++..... +..-.+.+..+.+.+.....-+..|....-. .
T Consensus 76 ---~~~~~~~~~-~~D~vI~SvH~~~~-----~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~----------~------ 130 (215)
T PRK08392 76 ---VDITDDFAK-KLDYVIASVHEWFG-----RPEHHEYIELVKLALMDENVDIIGHFGNSFP----------Y------ 130 (215)
T ss_pred ---chhHHHHHh-hCCEEEEEeecCcC-----CcHHHHHHHHHHHHHhcCCCCEEeCCCcccc----------C------
Confidence 233334333 22221 1111000 0011234555566665556678889632100 0
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEcccc
Q 015110 254 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPH 322 (413)
Q Consensus 254 ~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~ 322 (413)
...|. ...+.++++.+.+. |..+.|.-.-.. -..++++.+++.|++++...=.|
T Consensus 131 ----~~~~~---~~~~~~i~~~~~~~-------g~~lEiNt~~~~-p~~~~l~~~~~~G~~~~igSDAH 184 (215)
T PRK08392 131 ----IGYPS---EEELKEILDLAEAY-------GKAFEISSRYRV-PDLEFIRECIKRGIKLTFASDAH 184 (215)
T ss_pred ----CCCch---HHHHHHHHHHHHHh-------CCEEEEeCCCCC-CCHHHHHHHHHcCCEEEEeCCCC
Confidence 00111 23567777777764 777777632112 33578999999998887665444
No 189
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=60.62 E-value=1.4e+02 Score=27.53 Aligned_cols=67 Identities=9% Similarity=-0.013 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHH---HHHHHHhc-CCCEEEecCChhhchhhHhh
Q 015110 177 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE---GLSVLARY-KRPLLVHAEMEKGSERHVKL 243 (413)
Q Consensus 177 ~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~---~~~~A~~~-g~~v~~H~e~~~~~~~~~~~ 243 (413)
+.++...++++.|+.-+-+....+..+..+....+++++ +++..++. +.++++-..+.+.++..++.
T Consensus 25 ~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~~~v~e~al~~ 95 (257)
T cd00739 25 KAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVDTFRAEVARAALEA 95 (257)
T ss_pred HHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCCHHHHHHHHHh
Confidence 345667777888998887753322111112233445555 45666654 88999988888887776654
No 190
>PRK03906 mannonate dehydratase; Provisional
Probab=60.01 E-value=59 Score=31.96 Aligned_cols=159 Identities=18% Similarity=0.149 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCce
Q 015110 210 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 289 (413)
Q Consensus 210 ~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~ 289 (413)
.+.|.+++..|+++|+.+.+|..++...- .+++..- .-...+.++++.... +..|.-
T Consensus 213 ~~fL~~v~p~Aee~GV~LaihPdDPp~~~----------------~Gl~riv--~t~~d~~rll~~v~S-----p~~gl~ 269 (385)
T PRK03906 213 AYFLKAIIPVAEEVGVKMAIHPDDPPRPI----------------FGLPRIV--STEEDLQRLLDAVDS-----PANGLT 269 (385)
T ss_pred HHHHHHHHHHHHHcCCEEEEeeCCccccc----------------cccCcee--CCHHHHHHHHHhcCC-----CceeEE
Confidence 34678899999999999999997664210 0000000 002345555554321 222333
Q ss_pred EEEEccCCh-h-hHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCcc-EEc
Q 015110 290 LHIVHLSDA-S-SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID-MLS 366 (413)
Q Consensus 290 vhi~H~s~~-~-~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~-~i~ 366 (413)
+-..|++.. + .-.+.|+.... .| +|+.+.+-.....+.+.. .+++-+.-|-.++.++|.+-..+ .+-
T Consensus 270 lDtG~l~~~~e~D~~~~I~~~g~---RI------~hvHlrdv~~~~~~~F~E-~~hl~G~vD~~~vl~aL~~~gy~G~ir 339 (385)
T PRK03906 270 LCTGSLGARPDNDLPAMIREFGD---RI------HFAHLRNVKREGPGSFHE-AAHLSGDVDMYAVVKALLDEEFRIPMR 339 (385)
T ss_pred EchhhhhhcCCCCHHHHHHHhhh---hE------EEEeeccCccCCCCCccc-ccCCCCCCCHHHHHHHHHHcCCCccee
Confidence 444666432 0 23456665532 23 234343222111111211 23445666888888888764444 589
Q ss_pred CCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhhhcccc
Q 015110 367 SDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLM 408 (413)
Q Consensus 367 sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~ 408 (413)
-||.|.-..+.. ....+|.+.+.-++.+.|. .|+.
T Consensus 340 pDHg~~~~~d~~------~~~~pGY~~~gr~~g~~yl-~Gl~ 374 (385)
T PRK03906 340 PDHGRMIWDDLG------KKTNPGYGLYGRALGLAEL-RGLW 374 (385)
T ss_pred CCCCCCccCccC------CCCCCCcchHHHHHHHHHH-HHHH
Confidence 999886432210 0135677767777777764 3443
No 191
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=59.81 E-value=55 Score=31.08 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh---cCCCEEEecC
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR---YKRPLLVHAE 232 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~---~g~~v~~H~e 232 (413)
.+.++.+++.|+.++-+.- .+ +.++.++.+|-+++++.+.+ -+++|.+|+-
T Consensus 32 ~~lv~~li~~Gv~Gi~v~G-st--GE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~ 85 (309)
T cd00952 32 ARLVERLIAAGVDGILTMG-TF--GECATLTWEEKQAFVATVVETVAGRVPVFVGAT 85 (309)
T ss_pred HHHHHHHHHcCCCEEEECc-cc--ccchhCCHHHHHHHHHHHHHHhCCCCCEEEEec
Confidence 4556667788999875431 11 34567788888888776654 2367788864
No 192
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=59.34 E-value=1.7e+02 Score=29.92 Aligned_cols=114 Identities=10% Similarity=0.014 Sum_probs=72.5
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-CCCEEEecCChhhchhhHhhccCcCCccccccCC
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-KRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL 257 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (413)
.+...++.++|++-+-+.+..+ ....+.+..+++.+++. +.++++-..+.+.++.++..+- +..
T Consensus 168 ~~~A~~~~~~GADIIDIG~~st------~p~~~~v~~~V~~l~~~~~~pISIDT~~~~v~eaAL~aGA---diI------ 232 (499)
T TIGR00284 168 EGLAARMERDGADMVALGTGSF------DDDPDVVKEKVKTALDALDSPVIADTPTLDELYEALKAGA---SGV------ 232 (499)
T ss_pred HHHHHHHHHCCCCEEEECCCcC------CCcHHHHHHHHHHHHhhCCCcEEEeCCCHHHHHHHHHcCC---CEE------
Confidence 4556667789999887754321 12345688888888876 8999999999988877765421 110
Q ss_pred CCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCCh---hhHHHHHHHHHHCCC-CEEEE
Q 015110 258 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA---SSSLDLLMEAKTNGD-SITVE 318 (413)
Q Consensus 258 ~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~---~~~~~~i~~ak~~G~-~v~~e 318 (413)
.+... ....+++.++.++ |+++.+.|.... +...+.++.+++.|+ ++..|
T Consensus 233 NsVs~----~~~d~~~~l~a~~-------g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIlD 286 (499)
T TIGR00284 233 IMPDV----ENAVELASEKKLP-------EDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAAD 286 (499)
T ss_pred EECCc----cchhHHHHHHHHc-------CCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEEe
Confidence 11110 1233455556553 888999997632 134467788899999 55554
No 193
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=59.03 E-value=70 Score=29.92 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh---cCCCEEEecC
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR---YKRPLLVHAE 232 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~---~g~~v~~H~e 232 (413)
.+.++.+++.|+.++-+.-+ . +....++.+|-.++++.+.+ -++++.+++.
T Consensus 25 ~~~i~~l~~~Gv~gl~~~Gs-t--GE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~ 78 (289)
T PF00701_consen 25 KRLIDFLIEAGVDGLVVLGS-T--GEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG 78 (289)
T ss_dssp HHHHHHHHHTTSSEEEESST-T--TTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEECCC-C--cccccCCHHHHHHHHHHHHHHccCceEEEecCc
Confidence 45566667789888755321 1 23456777877777776654 3456777653
No 194
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=58.44 E-value=68 Score=28.63 Aligned_cols=74 Identities=20% Similarity=0.199 Sum_probs=50.7
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCC
Q 015110 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKT 259 (413)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (413)
..+.-+.+.|..++|.|.-. .....+|++.+.+.|.++|.++ |-...+
T Consensus 139 tAiaml~dmG~~SiKffPM~------Gl~~leE~~avA~aca~~g~~l----EPTGGI---------------------- 186 (236)
T TIGR03581 139 TAIAMLKDMGGSSVKFFPMG------GLKHLEEYAAVAKACAKHGFYL----EPTGGI---------------------- 186 (236)
T ss_pred HHHHHHHHcCCCeeeEeecC------CcccHHHHHHHHHHHHHcCCcc----CCCCCc----------------------
Confidence 34556667899999987322 1357889999999999999873 211111
Q ss_pred CchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCC
Q 015110 260 RPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD 297 (413)
Q Consensus 260 ~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~ 297 (413)
...-+..+++.+.+. |++-.|-|+-+
T Consensus 187 -----dl~Nf~~I~~i~lda-------Gv~kviPHIYs 212 (236)
T TIGR03581 187 -----DLDNFEEIVQIALDA-------GVEKVIPHVYS 212 (236)
T ss_pred -----cHHhHHHHHHHHHHc-------CCCeeccccce
Confidence 123566777777764 88888888865
No 195
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=58.15 E-value=1.3e+02 Score=26.52 Aligned_cols=98 Identities=20% Similarity=0.168 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCcEEEE-eecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec--CChhhchhhHhhccCcCCcccccc
Q 015110 179 ASALEALLNAGVLGLKS-FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA--EMEKGSERHVKLEDDTLDTRSYST 255 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~-~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~--e~~~~~~~~~~~~~~~~~~~~~~~ 255 (413)
.++++++.+.|+..+-+ .|...-... ..+..+.++++.+. .++++.+|. +++..
T Consensus 15 ~~~i~~l~~~g~d~lHiDiMDg~fvpn-~~~g~~~i~~i~~~---~~~~~DvHLMv~~P~~------------------- 71 (201)
T PF00834_consen 15 EEEIKRLEEAGADWLHIDIMDGHFVPN-LTFGPDIIKAIRKI---TDLPLDVHLMVENPER------------------- 71 (201)
T ss_dssp HHHHHHHHHTT-SEEEEEEEBSSSSSS-B-B-HHHHHHHHTT---SSSEEEEEEESSSGGG-------------------
T ss_pred HHHHHHHHHcCCCEEEEeecccccCCc-ccCCHHHHHHHhhc---CCCcEEEEeeeccHHH-------------------
Confidence 46788888889987743 454321111 13467666665433 678999996 33221
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEcccc
Q 015110 256 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPH 322 (413)
Q Consensus 256 ~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~ 322 (413)
-++...+. |+.....|.-+.+...+.++..|+.|+.+-....|.
T Consensus 72 ------------~i~~~~~~-----------g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~ 115 (201)
T PF00834_consen 72 ------------YIEEFAEA-----------GADYITFHAEATEDPKETIKYIKEAGIKAGIALNPE 115 (201)
T ss_dssp ------------HHHHHHHH-----------T-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TT
T ss_pred ------------HHHHHHhc-----------CCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECC
Confidence 23333332 444556666433255678999999999888777775
No 196
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=57.88 E-value=1.6e+02 Score=27.29 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=56.5
Q ss_pred CccchHHHHHHHHhCCceEEEeCCCCCC-CCCCcHHHHHHHHHHHhcCCeeeEEeeceecC-CchhhHHHHHHHHHcCCc
Q 015110 114 EWEGFPSGTKAAAAGGITTLIDMPLNSD-PSTISTETLKLKVDAAEKRIYVDVGFWGGLVP-ENAYNASALEALLNAGVL 191 (413)
Q Consensus 114 ~~e~~~~~~~~al~~GvTTv~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~G~~ 191 (413)
+++.+....+..+..|+..+.-++ .+. -...+.+...+.++.......-++....+... ...+..+..+...+.|++
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~G-stGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad 94 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLG-TTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGAD 94 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC-CCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCC
Confidence 345566777888899999998776 221 11222222222222221110001222222222 223445566666678999
Q ss_pred EEEEeecCCCCCCCCCCCHHHHHHHHH-HHHhcCCCEEEe
Q 015110 192 GLKSFMCPSGINDFPMTNASHIKEGLS-VLARYKRPLLVH 230 (413)
Q Consensus 192 ~ik~~~~~~~~~~~~~~~~~~l~~~~~-~A~~~g~~v~~H 230 (413)
++-+.. + .+...+++.+.+-++ .+...++|+.++
T Consensus 95 ~v~v~p-P----~y~~~~~~~~~~~~~~ia~~~~~pi~iY 129 (281)
T cd00408 95 GVLVVP-P----YYNKPSQEGIVAHFKAVADASDLPVILY 129 (281)
T ss_pred EEEECC-C----cCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 886532 1 112235565555544 444578999887
No 197
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=57.79 E-value=1.5e+02 Score=27.54 Aligned_cols=110 Identities=12% Similarity=0.116 Sum_probs=56.8
Q ss_pred ccchHHHHHHHHhCCceEEEeCCCCCC-CCCCcHHHHHHHHHHHhcCCeeeEEeeceecC-CchhhHHHHHHHHHcCCcE
Q 015110 115 WEGFPSGTKAAAAGGITTLIDMPLNSD-PSTISTETLKLKVDAAEKRIYVDVGFWGGLVP-ENAYNASALEALLNAGVLG 192 (413)
Q Consensus 115 ~e~~~~~~~~al~~GvTTv~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~G~~~ 192 (413)
.+.+....+..+..|+..++-++ .+. -...+.+......+.......-++....++.. ...+.++..+...+.|+++
T Consensus 20 ~~~~~~~i~~l~~~Gv~gl~v~G-stGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~ 98 (284)
T cd00950 20 FDALERLIEFQIENGTDGLVVCG-TTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADA 98 (284)
T ss_pred HHHHHHHHHHHHHcCCCEEEECC-CCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCE
Confidence 34556667788899999998775 221 11222222222232222111111222233322 2334566667777789998
Q ss_pred EEEeecCCCCCCCCCCCHHHHHHHHHH-HHhcCCCEEEe
Q 015110 193 LKSFMCPSGINDFPMTNASHIKEGLSV-LARYKRPLLVH 230 (413)
Q Consensus 193 ik~~~~~~~~~~~~~~~~~~l~~~~~~-A~~~g~~v~~H 230 (413)
+-+.. + .+...+.+++.+-++. +...++++.++
T Consensus 99 v~~~~-P----~~~~~~~~~l~~~~~~ia~~~~~pi~lY 132 (284)
T cd00950 99 ALVVT-P----YYNKPSQEGLYAHFKAIAEATDLPVILY 132 (284)
T ss_pred EEEcc-c----ccCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 75532 1 1112355555555544 44568999887
No 198
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=57.78 E-value=93 Score=29.02 Aligned_cols=50 Identities=12% Similarity=0.031 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 231 (413)
.+.++.+++.|+.++-+. +.. +.++.++.+|-+++++.+.+....+.+|+
T Consensus 23 ~~li~~l~~~Gv~Gl~~~-Gst--GE~~~Lt~eEr~~l~~~~~~~~~~vi~gv 72 (279)
T cd00953 23 KKHCENLISKGIDYVFVA-GTT--GLGPSLSFQEKLELLKAYSDITDKVIFQV 72 (279)
T ss_pred HHHHHHHHHcCCcEEEEc-ccC--CCcccCCHHHHHHHHHHHHHHcCCEEEEe
Confidence 345666677899887542 111 34567788888888877766444466665
No 199
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=57.39 E-value=1e+02 Score=28.96 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc---CCCEEEecC
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAE 232 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e 232 (413)
.+.++.+++.|+.++-+.-+ . +.+..++.++-.++++.+.+. +++|.+|+.
T Consensus 24 ~~l~~~l~~~Gv~gi~v~Gs-t--GE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~ 77 (289)
T cd00951 24 RAHVEWLLSYGAAALFAAGG-T--GEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG 77 (289)
T ss_pred HHHHHHHHHcCCCEEEECcC-C--cCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC
Confidence 34566667789998754321 1 345677888888887766653 477888863
No 200
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=57.24 E-value=1.2e+02 Score=27.61 Aligned_cols=98 Identities=14% Similarity=0.052 Sum_probs=60.0
Q ss_pred cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHH
Q 015110 188 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 267 (413)
Q Consensus 188 ~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~ 267 (413)
.-++.+|+.... ....+.+.+++.++.|+++|+++..= -..-+ ..+. ..
T Consensus 23 ~yID~lKfg~Gt-----~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E--~~~~-----------------------q~ 71 (237)
T TIGR03849 23 DYITFVKFGWGT-----SALIDRDIVKEKIEMYKDYGIKVYPG-GTLFE--IAHS-----------------------KG 71 (237)
T ss_pred hheeeEEecCce-----EeeccHHHHHHHHHHHHHcCCeEeCC-ccHHH--HHHH-----------------------hh
Confidence 445677764322 12346678999999999999987664 11111 0000 12
Q ss_pred HHHHHHHHHhhcccCCCCCCceEEEEccCC---hhhHHHHHHHHHHCCCCEEEEcccc
Q 015110 268 AIRELLTVAKDTRTDGPAEGAHLHIVHLSD---ASSSLDLLMEAKTNGDSITVETCPH 322 (413)
Q Consensus 268 ~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~---~~~~~~~i~~ak~~G~~v~~e~~p~ 322 (413)
.+.+.++.+++.|+. .+.|+-.+. .++-+++|+.+++.|..|-.|+...
T Consensus 72 ~~~~Yl~~~k~lGf~------~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K 123 (237)
T TIGR03849 72 KFDEYLNECDELGFE------AVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKK 123 (237)
T ss_pred hHHHHHHHHHHcCCC------EEEEcCCccCCCHHHHHHHHHHHHhCCCeEecccccc
Confidence 566677778776322 144444432 1355789999999999999887664
No 201
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=56.83 E-value=1.4e+02 Score=27.50 Aligned_cols=51 Identities=20% Similarity=0.095 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChh
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEK 235 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~ 235 (413)
.+.++++.+.|+..|.+- . ......++.+.++++..++ +++++.+|++|..
T Consensus 142 ~~~~~~~~~~G~~~i~l~--D----T~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~ 193 (259)
T cd07939 142 IEFAEVAQEAGADRLRFA--D----TVGILDPFTTYELIRRLRAATDLPLEFHAHNDL 193 (259)
T ss_pred HHHHHHHHHCCCCEEEeC--C----CCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 344555667888876442 2 2345788899999888774 5789999998754
No 202
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=56.26 E-value=1e+02 Score=28.77 Aligned_cols=51 Identities=8% Similarity=0.188 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc---CCCEEEecC
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAE 232 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e 232 (413)
.+.++.+++.|+.++-+. +.. +....++.+|-+++++.+.+. .++|.+|+.
T Consensus 22 ~~~i~~l~~~Gv~Gi~~~-Gst--GE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~ 75 (285)
T TIGR00674 22 EKLIDFQIENGTDAIVVV-GTT--GESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG 75 (285)
T ss_pred HHHHHHHHHcCCCEEEEC-ccC--cccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC
Confidence 455666677899887542 221 244567888888887766653 367777764
No 203
>PRK08444 hypothetical protein; Provisional
Probab=55.78 E-value=1.3e+02 Score=29.25 Aligned_cols=55 Identities=11% Similarity=-0.016 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhh
Q 015110 177 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG 236 (413)
Q Consensus 177 ~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~ 236 (413)
+..+.+++..+.|+..+-+..+. .+..+.+.+.++++..++.--.+.+|+-+..+
T Consensus 84 eI~~~a~~a~~~G~~ei~iv~G~-----~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~E 138 (353)
T PRK08444 84 EILEIVKNSVKRGIKEVHIVSAH-----NPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAE 138 (353)
T ss_pred HHHHHHHHHHHCCCCEEEEeccC-----CCCCCHHHHHHHHHHHHHHCCCceEeeCCHHH
Confidence 34555666667788776554221 23345667777888777643347777644443
No 204
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=54.11 E-value=90 Score=28.88 Aligned_cols=119 Identities=14% Similarity=0.123 Sum_probs=65.1
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhhchhhHhhccCcCCccccccCC
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL 257 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (413)
.+...++.++|+.-+-+....+ +....+.+..+++..++ .++|+++-..+.+.++..+.... .....
T Consensus 28 ~~~A~~~~~~GAdiIDVg~~~~-----~~eE~~r~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~~~-G~~iI------ 95 (261)
T PRK07535 28 QKLALKQAEAGADYLDVNAGTA-----VEEEPETMEWLVETVQEVVDVPLCIDSPNPAAIEAGLKVAK-GPPLI------ 95 (261)
T ss_pred HHHHHHHHHCCCCEEEECCCCC-----chhHHHHHHHHHHHHHHhCCCCEEEeCCCHHHHHHHHHhCC-CCCEE------
Confidence 4556677788988877643211 11234456677777664 48899888888887776665411 00000
Q ss_pred CCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCC------h----hhHHHHHHHHHHCCC---CEEEE
Q 015110 258 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD------A----SSSLDLLMEAKTNGD---SITVE 318 (413)
Q Consensus 258 ~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~------~----~~~~~~i~~ak~~G~---~v~~e 318 (413)
.+... +.....+++.+++++ |+++.+.|... . +...++++.+.+.|+ ++..|
T Consensus 96 NsIs~--~~~~~~~~~~l~~~~-------g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilD 160 (261)
T PRK07535 96 NSVSA--EGEKLEVVLPLVKKY-------NAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYID 160 (261)
T ss_pred EeCCC--CCccCHHHHHHHHHh-------CCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEe
Confidence 00000 001133455666654 78888878731 1 122345566777787 45444
No 205
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=54.08 E-value=89 Score=29.34 Aligned_cols=51 Identities=16% Similarity=0.062 Sum_probs=31.0
Q ss_pred HHHHHHHHHcC-CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc---CCCEEEecC
Q 015110 179 ASALEALLNAG-VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAE 232 (413)
Q Consensus 179 ~~~l~~l~~~G-~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e 232 (413)
.+.++.+++.| +.++-+. .+. +....++.+|-+++++.+.+. .++|.+|+.
T Consensus 24 ~~~i~~~i~~G~v~gi~~~--Gst-GE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~ 78 (290)
T TIGR00683 24 RQIIRHNIDKMKVDGLYVG--GST-GENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG 78 (290)
T ss_pred HHHHHHHHhCCCcCEEEEC--Ccc-cccccCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 45566667788 8887442 111 234567888777777766542 356777763
No 206
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=53.79 E-value=28 Score=32.94 Aligned_cols=85 Identities=21% Similarity=0.162 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHhcCCC-EEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCC
Q 015110 207 MTNASHIKEGLSVLARYKRP-LLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 285 (413)
Q Consensus 207 ~~~~~~l~~~~~~A~~~g~~-v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~ 285 (413)
+.+.+.++++++..+.+++- ++.|..|... +..-....|...+..+- .
T Consensus 12 ~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~----------------~~le~~~~p~l~~~g~~--------~------- 60 (303)
T cd02742 12 FLSVESIKRTIDVLARYKINTFHWHLTDDQA----------------WRIESKKFPELAEKGGQ--------I------- 60 (303)
T ss_pred CcCHHHHHHHHHHHHHhCCcEEEEeeecCCC----------------ceEeeCccchhhhhccc--------c-------
Confidence 57889999999999999885 5799876532 11112233433221100 0
Q ss_pred CCceEEEEccCChhhHHHHHHHHHHCCCCEEEEc-ccccc
Q 015110 286 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVET-CPHYL 324 (413)
Q Consensus 286 ~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~-~p~~l 324 (413)
+..-.-...|.. +-.++++.|+++|+.|.+|+ +|.|.
T Consensus 61 -~~~~~~~~yT~~-di~elv~yA~~rgI~viPEiD~PGH~ 98 (303)
T cd02742 61 -NPRSPGGFYTYA-QLKDIIEYAAARGIEVIPEIDMPGHS 98 (303)
T ss_pred -cCCCCCCeECHH-HHHHHHHHHHHcCCEEEEeccchHHH
Confidence 000011123333 66788888999999988888 56554
No 207
>PRK08444 hypothetical protein; Provisional
Probab=53.73 E-value=75 Score=30.86 Aligned_cols=117 Identities=14% Similarity=0.042 Sum_probs=68.6
Q ss_pred CccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-CeeeEEeeceec------CCchhhHHHHHHHH
Q 015110 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGGLV------PENAYNASALEALL 186 (413)
Q Consensus 114 ~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~l~~l~ 186 (413)
+.|.+...++.+...|+|.+.-.. +..|.. ..+.+.+.++..... +.+++..+.... ..+....+.+.++.
T Consensus 81 s~eeI~~~a~~a~~~G~~ei~iv~-G~~p~~-~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~Lk 158 (353)
T PRK08444 81 SHEEILEIVKNSVKRGIKEVHIVS-AHNPNY-GYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDML 158 (353)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEec-cCCCCC-CHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 345666778888899999998775 334433 345555555555432 334444211100 11122356788888
Q ss_pred HcCCcEEEEeecCCCCCC---------CC-CCCHHHHHHHHHHHHhcCCCE-----EEecCChhh
Q 015110 187 NAGVLGLKSFMCPSGIND---------FP-MTNASHIKEGLSVLARYKRPL-----LVHAEMEKG 236 (413)
Q Consensus 187 ~~G~~~ik~~~~~~~~~~---------~~-~~~~~~l~~~~~~A~~~g~~v-----~~H~e~~~~ 236 (413)
++|...+-- .+... .| ..+.+.+..+.+.|++.|+++ .-|.|+.+.
T Consensus 159 eAGl~~~~g----~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l~G~gEt~ed 219 (353)
T PRK08444 159 EYGVDSMPG----GGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSNATMLFGHIENREH 219 (353)
T ss_pred HhCcccCCC----CCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEecCCCHHH
Confidence 888764311 00000 11 346788999999999999874 557777664
No 208
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=53.17 E-value=1.5e+02 Score=28.97 Aligned_cols=50 Identities=18% Similarity=0.136 Sum_probs=34.8
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChh
Q 015110 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEK 235 (413)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~ 235 (413)
+.++.+.+.|+..+.+- . .....+++.+.++++..++ .++++.+|++|..
T Consensus 146 ~~~~~~~~~Ga~~i~l~--D----T~G~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~ 196 (365)
T TIGR02660 146 ELAEVAAEAGADRFRFA--D----TVGILDPFSTYELVRALRQAVDLPLEMHAHNDL 196 (365)
T ss_pred HHHHHHHHcCcCEEEEc--c----cCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 44455566888776432 1 2345788888888888765 5889999998765
No 209
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=52.89 E-value=59 Score=28.66 Aligned_cols=74 Identities=19% Similarity=0.185 Sum_probs=42.3
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCC
Q 015110 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKT 259 (413)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (413)
..+.-+.+.|..++|.|.-. .....+|++.+.+.|.+.|.++ ==.-.-+
T Consensus 139 tAiaml~dmG~~SiKffPm~------Gl~~leE~~avAkA~a~~g~~l-EPTGGId------------------------ 187 (218)
T PF07071_consen 139 TAIAMLKDMGGSSIKFFPMG------GLKHLEELKAVAKACARNGFTL-EPTGGID------------------------ 187 (218)
T ss_dssp HHHHHHHHTT--EEEE---T------TTTTHHHHHHHHHHHHHCT-EE-EEBSS--------------------------
T ss_pred HHHHHHHHcCCCeeeEeecC------CcccHHHHHHHHHHHHHcCcee-CCcCCcC------------------------
Confidence 44566667899999987322 1357899999999999999887 1111111
Q ss_pred CchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCC
Q 015110 260 RPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD 297 (413)
Q Consensus 260 ~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~ 297 (413)
...+..+++.+.+. |++..|-|+-+
T Consensus 188 ------l~N~~~I~~i~l~a-------Gv~~viPHiYs 212 (218)
T PF07071_consen 188 ------LDNFEEIVKICLDA-------GVEKVIPHIYS 212 (218)
T ss_dssp ------TTTHHHHHHHHHHT-------T-S-B--EE-G
T ss_pred ------HHHHHHHHHHHHHc-------CCCeeccchhh
Confidence 12356667777764 88888999865
No 210
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=52.73 E-value=1.7e+02 Score=26.10 Aligned_cols=106 Identities=15% Similarity=0.041 Sum_probs=59.3
Q ss_pred CCccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeee----EEeeceecCCchhhHHHHHHHHHc
Q 015110 113 TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD----VGFWGGLVPENAYNASALEALLNA 188 (413)
Q Consensus 113 ~~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~l~~~ 188 (413)
.+.+++...++.+...|+-+++..|+ .+....+...+ ..+. ++|..+..+ ......++++.++.
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~p~----------~v~~a~~~l~~-~~v~v~tVigFP~G~~~-~~~K~~E~~~Av~~ 82 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVNPS----------YVPLAKELLKG-TEVRICTVVGFPLGAST-TDVKLYETKEAIKY 82 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeCHH----------HHHHHHHHcCC-CCCeEEEEeCCCCCCCc-HHHHHHHHHHHHHc
Confidence 34577888899999999999986552 22222222222 1122 223222211 12346778888999
Q ss_pred CCcEEEEeecCCCC-CCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015110 189 GVLGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (413)
Q Consensus 189 G~~~ik~~~~~~~~-~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e 232 (413)
|++.+.+.+..... .+....-.+++.++.+.++ |+++-+=.|
T Consensus 83 GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~--g~~lKvIlE 125 (211)
T TIGR00126 83 GADEVDMVINIGALKDGNEEVVYDDIRAVVEACA--GVLLKVIIE 125 (211)
T ss_pred CCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcC--CCeEEEEEe
Confidence 99998876654210 0111123446777776664 777666333
No 211
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=52.61 E-value=2e+02 Score=26.87 Aligned_cols=107 Identities=15% Similarity=0.158 Sum_probs=55.6
Q ss_pred ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHH----HHHHHhcCCeeeEEeeceecC-CchhhHHHHHHHHHcC
Q 015110 115 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKL----KVDAAEKRIYVDVGFWGGLVP-ENAYNASALEALLNAG 189 (413)
Q Consensus 115 ~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~G 189 (413)
.+.+....+..+..|+..++-.+....-...+.+.-.. ..+...++ +....+... ...+.++..+.+.+.|
T Consensus 21 ~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~----~~vi~gv~~~~~~~~i~~a~~a~~~G 96 (292)
T PRK03170 21 FAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGR----VPVIAGTGSNSTAEAIELTKFAEKAG 96 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCC----CcEEeecCCchHHHHHHHHHHHHHcC
Confidence 34556677788899999998664111111122222222 22222222 222222322 2334566666777789
Q ss_pred CcEEEEeecCCCCCCCCCCCHHHHHHHHHH-HHhcCCCEEEe
Q 015110 190 VLGLKSFMCPSGINDFPMTNASHIKEGLSV-LARYKRPLLVH 230 (413)
Q Consensus 190 ~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~-A~~~g~~v~~H 230 (413)
++++-+.. + .+...+.+++.+-++. +...++++.+.
T Consensus 97 ~d~v~~~p-P----~~~~~~~~~i~~~~~~ia~~~~~pv~lY 133 (292)
T PRK03170 97 ADGALVVT-P----YYNKPTQEGLYQHFKAIAEATDLPIILY 133 (292)
T ss_pred CCEEEECC-C----cCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 99886532 1 1122355655555444 55568888887
No 212
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=52.22 E-value=1.8e+02 Score=27.65 Aligned_cols=110 Identities=13% Similarity=0.079 Sum_probs=56.6
Q ss_pred ccchHHHHHHHHhCCceEEEeCCCCCCC-CCCcHHHHHHHHHHHhcCCeeeEEeeceecC-CchhhHHHHHHHHHcCCcE
Q 015110 115 WEGFPSGTKAAAAGGITTLIDMPLNSDP-STISTETLKLKVDAAEKRIYVDVGFWGGLVP-ENAYNASALEALLNAGVLG 192 (413)
Q Consensus 115 ~e~~~~~~~~al~~GvTTv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~G~~~ 192 (413)
.+.+.......+..||..++-.+ .+.. ...+.+......+.+.....-++....+... ...+.++..+...+.|+++
T Consensus 28 ~~~l~~lv~~li~~Gv~Gi~v~G-stGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~ 106 (309)
T cd00952 28 LDETARLVERLIAAGVDGILTMG-TFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADG 106 (309)
T ss_pred HHHHHHHHHHHHHcCCCEEEECc-ccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCE
Confidence 44556677788899999998775 2211 1122222222222221111111222223322 2334566666667789998
Q ss_pred EEEeecCCCCCCCCCCCHHHHHHHHHHH-Hhc-CCCEEEe
Q 015110 193 LKSFMCPSGINDFPMTNASHIKEGLSVL-ARY-KRPLLVH 230 (413)
Q Consensus 193 ik~~~~~~~~~~~~~~~~~~l~~~~~~A-~~~-g~~v~~H 230 (413)
+-+.. + .+...+.+++.+-++.. ... ++|+.+.
T Consensus 107 vlv~~-P----~y~~~~~~~l~~yf~~va~a~~~lPv~iY 141 (309)
T cd00952 107 TMLGR-P----MWLPLDVDTAVQFYRDVAEAVPEMAIAIY 141 (309)
T ss_pred EEECC-C----cCCCCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 86532 1 11123556666655554 445 5888875
No 213
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=51.85 E-value=2e+02 Score=26.73 Aligned_cols=108 Identities=13% Similarity=0.078 Sum_probs=58.3
Q ss_pred CccchHHHHHHHHhCCceEEEeCCCCCCC-CCCcHHHHHHHHHHHhcCCeeeEEeeceec-CCchhhHHHHHHHHHcCCc
Q 015110 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDP-STISTETLKLKVDAAEKRIYVDVGFWGGLV-PENAYNASALEALLNAGVL 191 (413)
Q Consensus 114 ~~e~~~~~~~~al~~GvTTv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~G~~ 191 (413)
+.+.+....+..+..||..++-.+ .+.. ...+.+......+....... .+ ..+.. ....+.++..+...+.|++
T Consensus 18 D~~~~~~li~~l~~~Gv~Gl~~~G-stGE~~~Lt~eEr~~l~~~~~~~~~-~v--i~gvg~~~~~~ai~~a~~a~~~Gad 93 (279)
T cd00953 18 DKEKFKKHCENLISKGIDYVFVAG-TTGLGPSLSFQEKLELLKAYSDITD-KV--IFQVGSLNLEESIELARAAKSFGIY 93 (279)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcc-cCCCcccCCHHHHHHHHHHHHHHcC-CE--EEEeCcCCHHHHHHHHHHHHHcCCC
Confidence 445566677788899999998876 3221 12233222222222211110 11 11222 2233456666677778999
Q ss_pred EEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015110 192 GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 230 (413)
Q Consensus 192 ~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H 230 (413)
++-+.. +. .+...+.+.+.+-++...+ ++|+.+.
T Consensus 94 ~v~v~~-P~---y~~~~~~~~i~~yf~~v~~-~lpv~iY 127 (279)
T cd00953 94 AIASLP-PY---YFPGIPEEWLIKYFTDISS-PYPTFIY 127 (279)
T ss_pred EEEEeC-Cc---CCCCCCHHHHHHHHHHHHh-cCCEEEE
Confidence 886532 10 1111356777777777666 8999887
No 214
>PRK15452 putative protease; Provisional
Probab=51.51 E-value=2.7e+02 Score=28.03 Aligned_cols=53 Identities=9% Similarity=-0.053 Sum_probs=36.0
Q ss_pred hHHHHHHHHHcCCcEEEEeecC-CCCCCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015110 178 NASALEALLNAGVLGLKSFMCP-SGINDFPMTNASHIKEGLSVLARYKRPLLVH 230 (413)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~-~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H 230 (413)
.++.++.+++.||+.+-+.... ........++.++++++++.|+++|+.+.+-
T Consensus 12 ~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt 65 (443)
T PRK15452 12 TLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVV 65 (443)
T ss_pred CHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 4677888899999987442110 0000112457789999999999999887664
No 215
>PLN02417 dihydrodipicolinate synthase
Probab=51.47 E-value=83 Score=29.39 Aligned_cols=52 Identities=10% Similarity=-0.016 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc---CCCEEEecCC
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEM 233 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e~ 233 (413)
.+.++.+++.|+.++-+.- .. +.++.++.+|-+++++.+.+. .+++.+++..
T Consensus 25 ~~~i~~l~~~Gv~Gi~~~G-st--GE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~ 79 (280)
T PLN02417 25 DSLVNMQIENGAEGLIVGG-TT--GEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGS 79 (280)
T ss_pred HHHHHHHHHcCCCEEEECc-cC--cchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCC
Confidence 4556666778998875431 11 345667888888888776652 3677777643
No 216
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=51.28 E-value=1.8e+02 Score=26.06 Aligned_cols=97 Identities=20% Similarity=0.105 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCcEEEE-eecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec--CChhhchhhHhhccCcCCcccccc
Q 015110 179 ASALEALLNAGVLGLKS-FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA--EMEKGSERHVKLEDDTLDTRSYST 255 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~-~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~--e~~~~~~~~~~~~~~~~~~~~~~~ 255 (413)
.++++++.++|++.+-+ .|..+-..+ -.+.++.++++-+ ....++.+|. ++++.
T Consensus 19 ~~el~~~~~agad~iH~DVMDghFVPN-iTfGp~~v~~l~~---~t~~p~DvHLMV~~p~~------------------- 75 (220)
T COG0036 19 GEELKALEAAGADLIHIDVMDGHFVPN-ITFGPPVVKALRK---ITDLPLDVHLMVENPDR------------------- 75 (220)
T ss_pred HHHHHHHHHcCCCEEEEeccCCCcCCC-cccCHHHHHHHhh---cCCCceEEEEecCCHHH-------------------
Confidence 46788888889988754 343321111 1345555554433 3368999995 33321
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccC-ChhhHHHHHHHHHHCCCCEEEEcccc
Q 015110 256 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS-DASSSLDLLMEAKTNGDSITVETCPH 322 (413)
Q Consensus 256 ~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s-~~~~~~~~i~~ak~~G~~v~~e~~p~ 322 (413)
-+....+. |+.....|.- +. .-.++|+..|+.|+.+-+..+|.
T Consensus 76 ------------~i~~fa~a-----------gad~It~H~E~~~-~~~r~i~~Ik~~G~kaGv~lnP~ 119 (220)
T COG0036 76 ------------YIEAFAKA-----------GADIITFHAEATE-HIHRTIQLIKELGVKAGLVLNPA 119 (220)
T ss_pred ------------HHHHHHHh-----------CCCEEEEEeccCc-CHHHHHHHHHHcCCeEEEEECCC
Confidence 22222222 4444444443 33 55678888888898888888885
No 217
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=50.80 E-value=2.1e+02 Score=26.49 Aligned_cols=51 Identities=12% Similarity=0.081 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChh
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEK 235 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~ 235 (413)
.+.++++.+.|+..+.+- . .....+++.+.++++..++ +++++.+|++|..
T Consensus 144 ~~~~~~~~~~g~~~i~l~--D----t~G~~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~ 195 (262)
T cd07948 144 LRVYRAVDKLGVNRVGIA--D----TVGIATPRQVYELVRTLRGVVSCDIEFHGHNDT 195 (262)
T ss_pred HHHHHHHHHcCCCEEEEC--C----cCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 344455566788876442 1 2345788888888888775 5789999998764
No 218
>PRK12999 pyruvate carboxylase; Reviewed
Probab=50.32 E-value=1.6e+02 Score=33.72 Aligned_cols=105 Identities=18% Similarity=0.180 Sum_probs=61.0
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-e--eeEEeeceecCC-----chh-hHHHHHHHHHcCCc
Q 015110 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-Y--VDVGFWGGLVPE-----NAY-NASALEALLNAGVL 191 (413)
Q Consensus 121 ~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~-----~~~-~~~~l~~l~~~G~~ 191 (413)
..+.+.++|+..++.+- . ....+.++...+.+.... . +.+++.+.+.+. +.+ ..+..+++.+.|+.
T Consensus 632 ~i~~a~~~Gid~~rifd-~----lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~ 706 (1146)
T PRK12999 632 FVREAAAAGIDVFRIFD-S----LNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAH 706 (1146)
T ss_pred HHHHHHHcCCCEEEEec-c----CChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 37788999999998763 1 122344554444443222 2 222222111111 111 23455666778987
Q ss_pred EEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015110 192 GLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (413)
Q Consensus 192 ~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~ 236 (413)
.+.+- +.....++....++++..++ .++++.+|+++...
T Consensus 707 ~i~ik------Dt~G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~G 746 (1146)
T PRK12999 707 ILAIK------DMAGLLKPAAAYELVSALKEEVDLPIHLHTHDTSG 746 (1146)
T ss_pred EEEEC------CccCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCc
Confidence 66442 12245788888888888775 68999999988764
No 219
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=50.25 E-value=41 Score=29.69 Aligned_cols=103 Identities=14% Similarity=0.060 Sum_probs=55.9
Q ss_pred CccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-e--eeEEeeceecCCchhhHHHHHHHHHcCC
Q 015110 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-Y--VDVGFWGGLVPENAYNASALEALLNAGV 190 (413)
Q Consensus 114 ~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~l~~l~~~G~ 190 (413)
..+++....+.+...|+..++..+ ..++...+...+.. . ...+|..+. ........++++.++.|+
T Consensus 15 t~~~i~~~~~~a~~~~~~av~v~p----------~~v~~~~~~l~~~~~~v~~~~~fp~g~-~~~~~k~~eve~A~~~GA 83 (203)
T cd00959 15 TEEDIRKLCDEAKEYGFAAVCVNP----------CFVPLAREALKGSGVKVCTVIGFPLGA-TTTEVKVAEAREAIADGA 83 (203)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcH----------HHHHHHHHHcCCCCcEEEEEEecCCCC-CcHHHHHHHHHHHHHcCC
Confidence 456777888999999999988554 12222222222211 1 112222211 112234567888999999
Q ss_pred cEEEEeecCCCC-CCCCCCCHHHHHHHHHHHHhcCCCEEE
Q 015110 191 LGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLV 229 (413)
Q Consensus 191 ~~ik~~~~~~~~-~~~~~~~~~~l~~~~~~A~~~g~~v~~ 229 (413)
+.+.+.+..... .+......+++.++.+.++ |+++.+
T Consensus 84 devdvv~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkv 121 (203)
T cd00959 84 DEIDMVINIGALKSGDYEAVYEEIAAVVEACG--GAPLKV 121 (203)
T ss_pred CEEEEeecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEE
Confidence 999876654210 0111123456666666665 777655
No 220
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=49.48 E-value=2.3e+02 Score=26.58 Aligned_cols=109 Identities=14% Similarity=0.120 Sum_probs=56.2
Q ss_pred CccchHHHHHHHHh-CCceEEEeCCCCCCCCCCcHHHHHHHH----HHHhcCCeeeEEeeceec-CCchhhHHHHHHHHH
Q 015110 114 EWEGFPSGTKAAAA-GGITTLIDMPLNSDPSTISTETLKLKV----DAAEKRIYVDVGFWGGLV-PENAYNASALEALLN 187 (413)
Q Consensus 114 ~~e~~~~~~~~al~-~GvTTv~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~ 187 (413)
+.+.+....+..+. .|+..++-.+........+.+...... +...++. ....+.. ....+.++..+...+
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~----~viagvg~~~t~~ai~~a~~a~~ 97 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKV----KLIAQVGSVNTAEAQELAKYATE 97 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCC----CEEecCCCCCHHHHHHHHHHHHH
Confidence 34556667777888 999999877621111222222222222 2222221 1122222 223345566666677
Q ss_pred cCCcEEEEeecCCCCCCCCCCCHHHHHHHHH-HHHhcCCCEEEec
Q 015110 188 AGVLGLKSFMCPSGINDFPMTNASHIKEGLS-VLARYKRPLLVHA 231 (413)
Q Consensus 188 ~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~-~A~~~g~~v~~H~ 231 (413)
.|++++-+.. + .+...+.+.+.+-++ .+...++|+.+.-
T Consensus 98 ~Gad~v~v~~-P----~y~~~~~~~l~~~f~~va~a~~lPv~iYn 137 (293)
T PRK04147 98 LGYDAISAVT-P----FYYPFSFEEICDYYREIIDSADNPMIVYN 137 (293)
T ss_pred cCCCEEEEeC-C----cCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 8999986542 1 111224455555444 4555788988873
No 221
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=49.46 E-value=1.9e+02 Score=25.81 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=33.5
Q ss_pred HHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015110 181 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (413)
Q Consensus 181 ~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e 232 (413)
+.+..+++|++.+.+.- ..+.+.++.+++.|+++|+.+.+-.-
T Consensus 72 e~~ma~~aGAd~~tV~g---------~A~~~TI~~~i~~A~~~~~~v~iDl~ 114 (217)
T COG0269 72 EARMAFEAGADWVTVLG---------AADDATIKKAIKVAKEYGKEVQIDLI 114 (217)
T ss_pred HHHHHHHcCCCEEEEEe---------cCCHHHHHHHHHHHHHcCCeEEEEee
Confidence 45556788998876631 35778999999999999998888753
No 222
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=48.59 E-value=1.3e+02 Score=28.38 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=22.8
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh
Q 015110 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR 222 (413)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~ 222 (413)
+.++.+++.|+.++-+. +.+ +..+..|.+|-+++++.+.+
T Consensus 29 ~lv~~li~~Gv~gi~~~-Gtt--GE~~~Ls~eEr~~v~~~~v~ 68 (299)
T COG0329 29 RLVEFLIAAGVDGLVVL-GTT--GESPTLTLEERKEVLEAVVE 68 (299)
T ss_pred HHHHHHHHcCCCEEEEC-CCC--ccchhcCHHHHHHHHHHHHH
Confidence 44555667787776432 111 24456677776666666554
No 223
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=47.96 E-value=1.9e+02 Score=25.87 Aligned_cols=51 Identities=22% Similarity=0.139 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cC-CCEEEecCChh
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YK-RPLLVHAEMEK 235 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~-~g-~~v~~H~e~~~ 235 (413)
.+.++.+.+.|+..+.+-- .....+++.+..+++..++ ++ +++.+|++|..
T Consensus 140 ~~~~~~~~~~g~~~i~l~D------t~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~ 192 (237)
T PF00682_consen 140 LELAEALAEAGADIIYLAD------TVGIMTPEDVAELVRALREALPDIPLGFHAHNDL 192 (237)
T ss_dssp HHHHHHHHHHT-SEEEEEE------TTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTT
T ss_pred HHHHHHHHHcCCeEEEeeC------ccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCc
Confidence 4455556667888765431 2245788888888888875 45 88999998754
No 224
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=47.90 E-value=2.4e+02 Score=26.45 Aligned_cols=110 Identities=19% Similarity=0.195 Sum_probs=54.6
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCe-e--eEEeeceecCC---c---hhhHHHHHHHHH-cC
Q 015110 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY-V--DVGFWGGLVPE---N---AYNASALEALLN-AG 189 (413)
Q Consensus 120 ~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~---~---~~~~~~l~~l~~-~G 189 (413)
...+.+++.|+|++.--. ...|...+.+..++..+.+..... + .++..++.... . -...++..++++ -|
T Consensus 88 e~i~~Ai~~GftSVM~Dg-S~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~Tg 166 (283)
T PRK07998 88 EDVKQAVRAGFTSVMIDG-AALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTG 166 (283)
T ss_pred HHHHHHHHcCCCEEEEeC-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhC
Confidence 456788999999996432 223322333334444444432211 1 12221111110 0 123456666664 58
Q ss_pred CcEEEEeecC-CCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015110 190 VLGLKSFMCP-SGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (413)
Q Consensus 190 ~~~ik~~~~~-~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~ 233 (413)
++.+.+..+. +|....|..+.+.|+++.+ ..++|+.+|--+
T Consensus 167 vD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~---~~~vPLVlHGgS 208 (283)
T PRK07998 167 CDMLAVSIGNVHGLEDIPRIDIPLLKRIAE---VSPVPLVIHGGS 208 (283)
T ss_pred cCeeehhccccccCCCCCCcCHHHHHHHHh---hCCCCEEEeCCC
Confidence 8877664321 2211114456666666544 469999999643
No 225
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=47.20 E-value=2.3e+02 Score=27.60 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChh
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEK 235 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~ 235 (413)
.+.++++.+.|+..+.+. . .....+++.+.++++..++ .++++.+|++|.-
T Consensus 144 ~~~~~~~~~~g~~~i~l~--D----T~G~~~P~~v~~li~~l~~~~~~~l~~H~Hnd~ 195 (363)
T TIGR02090 144 IKVFKRAEEAGADRINIA--D----TVGVLTPQKMEELIKKLKENVKLPISVHCHNDF 195 (363)
T ss_pred HHHHHHHHhCCCCEEEEe--C----CCCccCHHHHHHHHHHHhcccCceEEEEecCCC
Confidence 344556667898876542 1 1235788889988888775 5788999998765
No 226
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=47.10 E-value=1.2e+02 Score=26.87 Aligned_cols=95 Identities=23% Similarity=0.240 Sum_probs=55.9
Q ss_pred cchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEE
Q 015110 116 EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 195 (413)
Q Consensus 116 e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~ 195 (413)
++....++.++.+|++.+---. ++ | ...+.++...+.. .. +.++. +-+ ...+.+++.++.|+..+-
T Consensus 16 ~~a~~ia~al~~gGi~~iEit~-~t-p--~a~~~I~~l~~~~-~~--~~vGA--GTV----l~~e~a~~ai~aGA~Fiv- 81 (201)
T PRK06015 16 EHAVPLARALAAGGLPAIEITL-RT-P--AALDAIRAVAAEV-EE--AIVGA--GTI----LNAKQFEDAAKAGSRFIV- 81 (201)
T ss_pred HHHHHHHHHHHHCCCCEEEEeC-CC-c--cHHHHHHHHHHHC-CC--CEEee--EeC----cCHHHHHHHHHcCCCEEE-
Confidence 4455677888999999774322 22 2 2334454433332 12 22221 111 124678888999987652
Q ss_pred eecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhc
Q 015110 196 FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGS 237 (413)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~ 237 (413)
+ |.++++ +++.++++|+++.-=+-++.++
T Consensus 82 --S-------P~~~~~----vi~~a~~~~i~~iPG~~TptEi 110 (201)
T PRK06015 82 --S-------PGTTQE----LLAAANDSDVPLLPGAATPSEV 110 (201)
T ss_pred --C-------CCCCHH----HHHHHHHcCCCEeCCCCCHHHH
Confidence 2 345554 5667889999998888777654
No 227
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=46.98 E-value=2.4e+02 Score=26.22 Aligned_cols=107 Identities=14% Similarity=0.171 Sum_probs=55.3
Q ss_pred ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHH----HHHHhcCCeeeEEeeceecC-CchhhHHHHHHHHHcC
Q 015110 115 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLK----VDAAEKRIYVDVGFWGGLVP-ENAYNASALEALLNAG 189 (413)
Q Consensus 115 ~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~G 189 (413)
.+.+....+..+..|+..++.++....-...+.+..... .+...++ +....+... ...+.++..+...+.|
T Consensus 18 ~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~----~~vi~gv~~~s~~~~i~~a~~a~~~G 93 (285)
T TIGR00674 18 FAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGR----VPVIAGTGSNATEEAISLTKFAEDVG 93 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCC----CeEEEeCCCccHHHHHHHHHHHHHcC
Confidence 344566677788999999987651111111222222222 2222222 222223322 2234556666667789
Q ss_pred CcEEEEeecCCCCCCCCCCCHHHHHHHHHH-HHhcCCCEEEe
Q 015110 190 VLGLKSFMCPSGINDFPMTNASHIKEGLSV-LARYKRPLLVH 230 (413)
Q Consensus 190 ~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~-A~~~g~~v~~H 230 (413)
++++-+.. + .+...+++++.+-++. +...++++.+.
T Consensus 94 ad~v~v~p-P----~y~~~~~~~i~~~~~~i~~~~~~pi~lY 130 (285)
T TIGR00674 94 ADGFLVVT-P----YYNKPTQEGLYQHFKAIAEEVDLPIILY 130 (285)
T ss_pred CCEEEEcC-C----cCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 99886542 1 1112355665554444 55678898876
No 228
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=46.80 E-value=1.9e+02 Score=26.79 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc---CCCEEEecC
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAE 232 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e 232 (413)
.+.++.+++.|+.++-+.- .. +.+..++.+|-+++++.+.+. .+++.+|+.
T Consensus 21 ~~~i~~l~~~Gv~gi~~~G-st--GE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~ 74 (281)
T cd00408 21 RRLVEFLIEAGVDGLVVLG-TT--GEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG 74 (281)
T ss_pred HHHHHHHHHcCCCEEEECC-CC--cccccCCHHHHHHHHHHHHHHhCCCCeEEEecC
Confidence 3445555566777764321 11 234456666666666655542 356677753
No 229
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=46.41 E-value=1.8e+02 Score=27.14 Aligned_cols=49 Identities=14% Similarity=0.254 Sum_probs=22.8
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc---CCCEEEec
Q 015110 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHA 231 (413)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~ 231 (413)
+.++.+++.|+.++-+. +.. +....++.+|-.++++.+.+. ++++.+|+
T Consensus 26 ~~i~~l~~~Gv~gi~~~-Gs~--GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv 77 (292)
T PRK03170 26 KLVDYLIANGTDGLVVV-GTT--GESPTLTHEEHEELIRAVVEAVNGRVPVIAGT 77 (292)
T ss_pred HHHHHHHHcCCCEEEEC-CcC--CccccCCHHHHHHHHHHHHHHhCCCCcEEeec
Confidence 33444455566655332 111 233445555555555544432 24566664
No 230
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=46.15 E-value=2.1e+02 Score=26.64 Aligned_cols=107 Identities=12% Similarity=0.148 Sum_probs=55.8
Q ss_pred ccchHHHHHHHHhCCceEEEeCCCCCCC-CCCcHHHHHH----HHHHHhcCCeeeEEeeceecC-CchhhHHHHHHHHHc
Q 015110 115 WEGFPSGTKAAAAGGITTLIDMPLNSDP-STISTETLKL----KVDAAEKRIYVDVGFWGGLVP-ENAYNASALEALLNA 188 (413)
Q Consensus 115 ~e~~~~~~~~al~~GvTTv~d~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~ 188 (413)
.+.+....+..+..|+..++-.+ .+.. ...+.+.... ..+.+.++.. ...++.. ...+.++..+...+.
T Consensus 21 ~~~~~~~i~~l~~~Gv~gl~~~G-stGE~~~Lt~~Er~~l~~~~~~~~~~~~~----vi~gv~~~st~~~i~~a~~a~~~ 95 (289)
T PF00701_consen 21 EDALKRLIDFLIEAGVDGLVVLG-STGEFYSLTDEERKELLEIVVEAAAGRVP----VIAGVGANSTEEAIELARHAQDA 95 (289)
T ss_dssp HHHHHHHHHHHHHTTSSEEEESS-TTTTGGGS-HHHHHHHHHHHHHHHTTSSE----EEEEEESSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCEEEECC-CCcccccCCHHHHHHHHHHHHHHccCceE----EEecCcchhHHHHHHHHHHHhhc
Confidence 34456667778899999998876 2211 1122222222 2222223322 2222322 234556677777788
Q ss_pred CCcEEEEeecCCCCCCCCCCCHHHHHHHH-HHHHhcCCCEEEec
Q 015110 189 GVLGLKSFMCPSGINDFPMTNASHIKEGL-SVLARYKRPLLVHA 231 (413)
Q Consensus 189 G~~~ik~~~~~~~~~~~~~~~~~~l~~~~-~~A~~~g~~v~~H~ 231 (413)
|++++-+.. | .+...+.+.+.+-+ +.+..-++|+.++-
T Consensus 96 Gad~v~v~~-P----~~~~~s~~~l~~y~~~ia~~~~~pi~iYn 134 (289)
T PF00701_consen 96 GADAVLVIP-P----YYFKPSQEELIDYFRAIADATDLPIIIYN 134 (289)
T ss_dssp T-SEEEEEE-S----TSSSCCHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred CceEEEEec-c----ccccchhhHHHHHHHHHHhhcCCCEEEEE
Confidence 999886532 2 11224555554444 44555778998874
No 231
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=45.89 E-value=2.4e+02 Score=25.82 Aligned_cols=119 Identities=16% Similarity=0.149 Sum_probs=67.0
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCC
Q 015110 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL 257 (413)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (413)
..+.++.+.+.|..++.++..... ...+..+...++++.+.++++|+.+..+........ .. ..
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~-~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~------------~~---~~ 78 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPH-AFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYP------------YN---MM 78 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCcc-ccccccCchHHHHHHHHHHHcCCeEEEecCcccCcC------------cc---cc
Confidence 346677777889999887532210 011224456788888899999999877542111000 00 00
Q ss_pred CCCchH--HHHHHHHHHHHHHhhcccCCCCCCceEEEEccCC------hhh-------HH-HHHHHHHHCCCCEEEEc
Q 015110 258 KTRPPS--WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD------ASS-------SL-DLLMEAKTNGDSITVET 319 (413)
Q Consensus 258 ~~~p~~--~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~------~~~-------~~-~~i~~ak~~G~~v~~e~ 319 (413)
...+.. .....+.+.+++|+.. |++..+.|... .++ .+ ++.+.|++.|+.+..|.
T Consensus 79 ~~~~~~r~~~~~~~~~~i~~a~~l-------Ga~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 79 LGDEHMRRESLDMIKLAMDMAKEM-------NAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHh-------CCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 001111 1234677888888865 67766665431 101 12 44556788899888886
No 232
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.68 E-value=1.2e+02 Score=27.21 Aligned_cols=100 Identities=21% Similarity=0.167 Sum_probs=58.2
Q ss_pred ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEE
Q 015110 115 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 194 (413)
Q Consensus 115 ~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik 194 (413)
.++.....+.+.++|++.+---. ++ | ...+.++...+.......+.++. +-+ ...+.+++.++.|+..+-
T Consensus 24 ~~~a~~~~~al~~~Gi~~iEit~-~~-~--~a~~~i~~l~~~~~~~p~~~vGa--GTV----~~~~~~~~a~~aGA~Fiv 93 (213)
T PRK06552 24 KEEALKISLAVIKGGIKAIEVTY-TN-P--FASEVIKELVELYKDDPEVLIGA--GTV----LDAVTARLAILAGAQFIV 93 (213)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEC-CC-c--cHHHHHHHHHHHcCCCCCeEEee--eeC----CCHHHHHHHHHcCCCEEE
Confidence 34556677888999999885322 22 2 23445555443322111122321 111 124678888999997652
Q ss_pred EeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhch
Q 015110 195 SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSE 238 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~ 238 (413)
+ |.++++ +++.++++|+++.-=+.+..++.
T Consensus 94 ---s-------P~~~~~----v~~~~~~~~i~~iPG~~T~~E~~ 123 (213)
T PRK06552 94 ---S-------PSFNRE----TAKICNLYQIPYLPGCMTVTEIV 123 (213)
T ss_pred ---C-------CCCCHH----HHHHHHHcCCCEECCcCCHHHHH
Confidence 2 345554 56678899999988887776654
No 233
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=45.33 E-value=2.6e+02 Score=26.15 Aligned_cols=111 Identities=13% Similarity=-0.007 Sum_probs=55.4
Q ss_pred ccchHHHHHHHHhCC-ceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceec-CCchhhHHHHHHHHHcCCcE
Q 015110 115 WEGFPSGTKAAAAGG-ITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV-PENAYNASALEALLNAGVLG 192 (413)
Q Consensus 115 ~e~~~~~~~~al~~G-vTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~G~~~ 192 (413)
.+.+....+..+..| ++.++-.+........+.+......+.......-++....+.. ....+..+..+...+.|+++
T Consensus 20 ~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~ 99 (290)
T TIGR00683 20 EKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDC 99 (290)
T ss_pred HHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCE
Confidence 344566677788899 9998877521111222332222222222111000112222222 22334566666667789998
Q ss_pred EEEeecCCCCCCCCCCCHHHHHHHHHHH-Hhc-CCCEEEe
Q 015110 193 LKSFMCPSGINDFPMTNASHIKEGLSVL-ARY-KRPLLVH 230 (413)
Q Consensus 193 ik~~~~~~~~~~~~~~~~~~l~~~~~~A-~~~-g~~v~~H 230 (413)
+-+.. + .+...+.+++.+-++.. ... ++++.+-
T Consensus 100 v~v~~-P----~y~~~~~~~i~~yf~~v~~~~~~lpv~lY 134 (290)
T TIGR00683 100 LSAVT-P----FYYKFSFPEIKHYYDTIIAETGGLNMIVY 134 (290)
T ss_pred EEEeC-C----cCCCCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 86632 2 11223556666655554 445 6888765
No 234
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=45.26 E-value=2.1e+02 Score=26.38 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-C---CCEEEecCChh
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-K---RPLLVHAEMEK 235 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~-g---~~v~~H~e~~~ 235 (413)
.+.++++.+.|+..|.+- . .....+++.+..+++..++. + +++.+|+++..
T Consensus 146 ~~~~~~~~~~G~~~i~l~--D----T~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~ 200 (268)
T cd07940 146 IEVVEAAIEAGATTINIP--D----TVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDL 200 (268)
T ss_pred HHHHHHHHHcCCCEEEEC--C----CCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCc
Confidence 445556667888876442 1 23457888999999888863 4 78999998754
No 235
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=45.24 E-value=1.1e+02 Score=26.34 Aligned_cols=116 Identities=18% Similarity=0.133 Sum_probs=66.1
Q ss_pred HHHHHcCCcEEEEeecCCCCCCCCCCC--HHHHHHHHHHHHhcCCCEEEe-cCChhhchhhHhhccCcCCccccccCCCC
Q 015110 183 EALLNAGVLGLKSFMCPSGINDFPMTN--ASHIKEGLSVLARYKRPLLVH-AEMEKGSERHVKLEDDTLDTRSYSTYLKT 259 (413)
Q Consensus 183 ~~l~~~G~~~ik~~~~~~~~~~~~~~~--~~~l~~~~~~A~~~g~~v~~H-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (413)
+.+.+.|..++.+...... ... ...+.++.+.++++|+.+..+ ........ .. .....
T Consensus 2 ~~~~~~G~~~vE~~~~~~~-----~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~------------~~--~~~~~ 62 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQ-----PWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSP------------DE--ENGSA 62 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHS-----HHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCT------------GT--TSTTS
T ss_pred hHHHHcCCCEEEEecCCCc-----ccccchHHHHHHHHHHHHcCCeEEEEecccccccc------------cc--cccCc
Confidence 4566788888877643211 011 357889999999999986554 32111100 00 00001
Q ss_pred Cch-HHHHHHHHHHHHHHhhcccCCCCCCceEEEEccC---Ch---------h---hH-HHHHHHHHHCCCCEEEEcccc
Q 015110 260 RPP-SWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS---DA---------S---SS-LDLLMEAKTNGDSITVETCPH 322 (413)
Q Consensus 260 ~p~-~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s---~~---------~---~~-~~~i~~ak~~G~~v~~e~~p~ 322 (413)
.++ ..-...+.+.+++|+.. |++..+.|.. .. + +. -++.+.+++.|+.+..|..+.
T Consensus 63 ~~~r~~~~~~~~~~i~~a~~l-------g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 135 (213)
T PF01261_consen 63 NDEREEALEYLKKAIDLAKRL-------GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPG 135 (213)
T ss_dssp SSHHHHHHHHHHHHHHHHHHH-------TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSS
T ss_pred chhhHHHHHHHHHHHHHHHHh-------CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccC
Confidence 111 11235677888888876 8888888865 10 0 11 134455778899999998876
Q ss_pred cc
Q 015110 323 YL 324 (413)
Q Consensus 323 ~l 324 (413)
..
T Consensus 136 ~~ 137 (213)
T PF01261_consen 136 PF 137 (213)
T ss_dssp SS
T ss_pred cc
Confidence 44
No 236
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=44.71 E-value=70 Score=29.42 Aligned_cols=107 Identities=9% Similarity=0.040 Sum_probs=58.4
Q ss_pred CccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC--eeeE--EeeceecCCchhhHHHHHHHHHcC
Q 015110 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI--YVDV--GFWGGLVPENAYNASALEALLNAG 189 (413)
Q Consensus 114 ~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~l~~l~~~G 189 (413)
..+++....+.+..+|+..++..|+.. +...+...... .+.+ ++..+...........++++++.|
T Consensus 34 ~~~~~~~~~~~a~~~~~~~v~~~p~~~----------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~G 103 (258)
T TIGR01949 34 GLVDIRKTVNEVAEGGADAVLLHKGIV----------RRGHRGYGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMG 103 (258)
T ss_pred CcCCHHHHHHHHHhcCCCEEEeCcchh----------hhcccccCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCC
Confidence 456778889999999999998765211 11001111111 1111 111110011112335688899999
Q ss_pred CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015110 190 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (413)
Q Consensus 190 ~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e 232 (413)
++.+.+........ ..-..+++.++.+.++++|+++.+..+
T Consensus 104 a~~v~~~~~~g~~~--~~~~~~~~~~i~~~~~~~g~~liv~~~ 144 (258)
T TIGR01949 104 ADAVSIHVNVGSDT--EWEQIRDLGMIAEICDDWGVPLLAMMY 144 (258)
T ss_pred CCEEEEEEecCCch--HHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 98877654321100 011224678888888999999988543
No 237
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.76 E-value=1.6e+02 Score=26.52 Aligned_cols=98 Identities=19% Similarity=0.112 Sum_probs=56.2
Q ss_pred cchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-CeeeEEeeceecCCchhhHHHHHHHHHcCCcEEE
Q 015110 116 EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 194 (413)
Q Consensus 116 e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik 194 (413)
+.....++.++.+|++.+---. ++ | ...+.++...+..... ..+.++. +-+ ...+.+++.++.|+..+-
T Consensus 27 ~~a~~~~~al~~gGi~~iEiT~-~t-p--~a~~~i~~l~~~~~~~~p~~~vGa--GTV----l~~e~a~~a~~aGA~FiV 96 (222)
T PRK07114 27 EVAKKVIKACYDGGARVFEFTN-RG-D--FAHEVFAELVKYAAKELPGMILGV--GSI----VDAATAALYIQLGANFIV 96 (222)
T ss_pred HHHHHHHHHHHHCCCCEEEEeC-CC-C--cHHHHHHHHHHHHHhhCCCeEEee--EeC----cCHHHHHHHHHcCCCEEE
Confidence 4455667888999999774322 22 2 2345555444333221 2122221 111 124677888899987652
Q ss_pred EeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhc
Q 015110 195 SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGS 237 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~ 237 (413)
+ |.++++ +++.++++|+++.-=+-++.++
T Consensus 97 ---s-------P~~~~~----v~~~~~~~~i~~iPG~~TpsEi 125 (222)
T PRK07114 97 ---T-------PLFNPD----IAKVCNRRKVPYSPGCGSLSEI 125 (222)
T ss_pred ---C-------CCCCHH----HHHHHHHcCCCEeCCCCCHHHH
Confidence 2 345554 5667889999988877766543
No 238
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=43.61 E-value=29 Score=34.07 Aligned_cols=35 Identities=9% Similarity=0.011 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEec-CChhhchhhH
Q 015110 207 MTNASHIKEGLSVLARYKRPLLVHA-EMEKGSERHV 241 (413)
Q Consensus 207 ~~~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~ 241 (413)
.++.++++++++.|+++|+++.+|+ +..+.+....
T Consensus 210 ~~~~e~i~~~v~~A~~~g~~v~sH~~~~~~~i~~a~ 245 (383)
T PRK15446 210 RYAPPNRRAIAALARARGIPLASHDDDTPEHVAEAH 245 (383)
T ss_pred hcCHHHHHHHHHHHHHCCCceeecCCCCHHHHHHHH
Confidence 4688999999999999999999999 6666554433
No 239
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=43.61 E-value=77 Score=30.85 Aligned_cols=51 Identities=12% Similarity=0.071 Sum_probs=36.8
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEE
Q 015110 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 229 (413)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~ 229 (413)
..+.+++.+..+.+.+-+..+|+...+ ..++.++|..+.+.|+++|+.|..
T Consensus 146 D~~~LE~~~~~~~vkl~iLCnPHNP~G-rvwt~eeL~~i~elc~kh~v~VIS 196 (388)
T COG1168 146 DFDALEKAFVDERVKLFILCNPHNPTG-RVWTKEELRKIAELCLRHGVRVIS 196 (388)
T ss_pred cHHHHHHHHhcCCccEEEEeCCCCCCC-ccccHHHHHHHHHHHHHcCCEEEe
Confidence 357788777776544444455554322 357999999999999999999865
No 240
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=43.47 E-value=53 Score=31.83 Aligned_cols=81 Identities=14% Similarity=0.099 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHHhcCCC-EEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCC
Q 015110 207 MTNASHIKEGLSVLARYKRP-LLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 285 (413)
Q Consensus 207 ~~~~~~l~~~~~~A~~~g~~-v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~ 285 (413)
+++.+.++++++..+.+++- ++.|..|... +..-.++.|...+. +..
T Consensus 14 f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~----------------~rle~~~~P~Lt~~---------ga~------- 61 (348)
T cd06562 14 FLSVDSIKRTIDAMAYNKLNVLHWHITDSQS----------------FPLESPSYPELSKK---------GAY------- 61 (348)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEeEEcCCC----------------ceEeeCCCchhhhc---------cCc-------
Confidence 46889999999999988884 6899866432 11111233432211 000
Q ss_pred CCceEEEEccCChhhHHHHHHHHHHCCCCEEEEc-ccccc
Q 015110 286 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVET-CPHYL 324 (413)
Q Consensus 286 ~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~-~p~~l 324 (413)
.. -...|-. +--++++.|+++|+.|.+|+ .|.|.
T Consensus 62 ~~----~~~YT~~-di~eiv~yA~~rgI~vIPEID~PGH~ 96 (348)
T cd06562 62 SP----SEVYTPE-DVKEIVEYARLRGIRVIPEIDTPGHT 96 (348)
T ss_pred CC----CceECHH-HHHHHHHHHHHcCCEEEEeccCchhh
Confidence 00 0112333 66788888999999998888 55544
No 241
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=43.35 E-value=1.2e+02 Score=28.08 Aligned_cols=106 Identities=11% Similarity=0.099 Sum_probs=59.4
Q ss_pred CccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC--eeeEEeeceecC--CchhhHHHHHHHHHcC
Q 015110 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI--YVDVGFWGGLVP--ENAYNASALEALLNAG 189 (413)
Q Consensus 114 ~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~l~~l~~~G 189 (413)
..+++....+.++..|+..++..++ .+....+...... .+.+....++.+ .......+++++++.|
T Consensus 37 ~~~d~~~~~~~a~~~~~~av~v~~~----------~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~G 106 (267)
T PRK07226 37 GLVDIRDTVNKVAEGGADAVLMHKG----------LARHGHRGYGRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLG 106 (267)
T ss_pred CcCCHHHHHHHHHhcCCCEEEeCHh----------HHhhhccccCCCCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcC
Confidence 4567788899999999999986541 1111111111111 111110011111 1122346688889999
Q ss_pred CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec
Q 015110 190 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231 (413)
Q Consensus 190 ~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 231 (413)
++.+++........ ...-.+++.++.+.++++|+++.++.
T Consensus 107 ad~v~~~~~~g~~~--~~~~~~~~~~v~~~~~~~g~pl~vi~ 146 (267)
T PRK07226 107 ADAVSVHVNVGSET--EAEMLEDLGEVAEECEEWGMPLLAMM 146 (267)
T ss_pred CCEEEEEEecCChh--HHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 98887654332110 01134577888889999999998874
No 242
>PRK13753 dihydropteroate synthase; Provisional
Probab=42.81 E-value=2.9e+02 Score=25.88 Aligned_cols=67 Identities=15% Similarity=0.069 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHH---HHHHHHHhcCCCEEEecCChhhchhhHhh
Q 015110 177 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK---EGLSVLARYKRPLLVHAEMEKGSERHVKL 243 (413)
Q Consensus 177 ~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~---~~~~~A~~~g~~v~~H~e~~~~~~~~~~~ 243 (413)
..++...++++.|++-|-+....+..+..+....+|+. .+++..++.+.++.+-....+.++..+..
T Consensus 26 ~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~ISIDT~~~~va~~al~a 95 (279)
T PRK13753 26 GAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHRVSIDSFQPETQRYALKR 95 (279)
T ss_pred HHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCcEEEECCCHHHHHHHHHc
Confidence 34667777888999888765332211112233455676 66777777788888888888877766653
No 243
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=42.08 E-value=3e+02 Score=25.85 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=55.0
Q ss_pred HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-ee--eEEeeceecCC-----c---hhhHHHHHHHHH
Q 015110 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YV--DVGFWGGLVPE-----N---AYNASALEALLN 187 (413)
Q Consensus 119 ~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~-----~---~~~~~~l~~l~~ 187 (413)
....+.+++.|+|++.--. ...|...+.+.-++..+.+.... .+ .++..++.... . -...++..+.++
T Consensus 87 ~e~i~~Ai~~GftSVM~Dg-S~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~ 165 (284)
T PRK09195 87 FDDIAQKVRSGVRSVMIDG-SHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVE 165 (284)
T ss_pred HHHHHHHHHcCCCEEEeCC-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHH
Confidence 3568899999999996433 22332222333333333333221 11 11211111110 0 113456666665
Q ss_pred -cCCcEEEEeecC-CCC-CCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015110 188 -AGVLGLKSFMCP-SGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (413)
Q Consensus 188 -~G~~~ik~~~~~-~~~-~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e 232 (413)
-|++.+-+..+. +|. ...|..+.+.|+++-+ ..++|+.+|--
T Consensus 166 ~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~---~~~vPLVLHGg 210 (284)
T PRK09195 166 ATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQ---WVNIPLVLHGA 210 (284)
T ss_pred HHCcCEEeeccCccccccCCCCcCCHHHHHHHHH---HhCCCeEEecC
Confidence 588776553321 221 1124577777777754 35899999953
No 244
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=41.86 E-value=1.6e+02 Score=26.17 Aligned_cols=96 Identities=18% Similarity=0.183 Sum_probs=56.0
Q ss_pred ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEE
Q 015110 115 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 194 (413)
Q Consensus 115 ~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik 194 (413)
.++.....+.+..+|++.+---. ++ | ...+.++...+.. ..+.++. +-+ ...+..++.++.|+..+
T Consensus 19 ~e~a~~~~~al~~~Gi~~iEit~-~t-~--~a~~~i~~l~~~~---~~~~vGA--GTV----l~~~~a~~a~~aGA~Fi- 84 (204)
T TIGR01182 19 VDDALPLAKALIEGGLRVLEVTL-RT-P--VALDAIRLLRKEV---PDALIGA--GTV----LNPEQLRQAVDAGAQFI- 84 (204)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeC-CC-c--cHHHHHHHHHHHC---CCCEEEE--EeC----CCHHHHHHHHHcCCCEE-
Confidence 34555677888999999774322 22 2 2234444443322 1122221 111 12467888899999776
Q ss_pred EeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhc
Q 015110 195 SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGS 237 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~ 237 (413)
++ |.+++ ++++.++++|+++.-=+-++.++
T Consensus 85 --vs-------P~~~~----~v~~~~~~~~i~~iPG~~TptEi 114 (204)
T TIGR01182 85 --VS-------PGLTP----ELAKHAQDHGIPIIPGVATPSEI 114 (204)
T ss_pred --EC-------CCCCH----HHHHHHHHcCCcEECCCCCHHHH
Confidence 23 23454 46678899999988877666543
No 245
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=41.71 E-value=2.1e+02 Score=29.08 Aligned_cols=102 Identities=17% Similarity=0.169 Sum_probs=55.7
Q ss_pred hHHHHHHHHhCCceEEE-eCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEe
Q 015110 118 FPSGTKAAAAGGITTLI-DMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSF 196 (413)
Q Consensus 118 ~~~~~~~al~~GvTTv~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~ 196 (413)
.....+..+..|+..+. |.. +. . + ..+.+.++..+.. +.+.....+ +-...+..+.+++.|++.+|+.
T Consensus 228 ~~~~a~~Lv~aGvd~i~~D~a-~~-~---~-~~~~~~i~~ik~~-~p~~~v~ag----nv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 228 VAAKARALLEAGVDVLVVDTA-HG-H---Q-EKMLEALRAVRAL-DPGVPIVAG----NVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred HHHHHHHHHHhCCCEEEEecc-CC-c---c-HHHHHHHHHHHHH-CCCCeEEee----ccCCHHHHHHHHHcCCCEEEEC
Confidence 34556777889998875 332 11 1 1 2222223333221 112222222 2234567888889999999987
Q ss_pred ecCCCC------CCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015110 197 MCPSGI------NDFPMTNASHIKEGLSVLARYKRPLLVH 230 (413)
Q Consensus 197 ~~~~~~------~~~~~~~~~~l~~~~~~A~~~g~~v~~H 230 (413)
+.+..+ .+...-....+.++.+.|+++|+++..-
T Consensus 297 ig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ 336 (479)
T PRK07807 297 VGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWAD 336 (479)
T ss_pred ccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEec
Confidence 765211 1111223446677777777889888764
No 246
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=41.68 E-value=35 Score=32.84 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=35.1
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec
Q 015110 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231 (413)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 231 (413)
..+++.++.|++++.......+ .......+++.+++++|+++|+|+.+.+
T Consensus 150 ~sVedAlrLGAdAV~~tvy~Gs--~~E~~ml~~l~~i~~ea~~~GlPlv~~~ 199 (348)
T PRK09250 150 ASVEDALRLGAVAVGATIYFGS--EESRRQIEEISEAFEEAHELGLATVLWS 199 (348)
T ss_pred ecHHHHHHCCCCEEEEEEecCC--HHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 4588889999998876554431 1111234567888999999999998864
No 247
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=41.53 E-value=2.2e+02 Score=26.38 Aligned_cols=25 Identities=4% Similarity=0.141 Sum_probs=11.8
Q ss_pred CCCHHHHHHHHHHHHhc---CCCEEEec
Q 015110 207 MTNASHIKEGLSVLARY---KRPLLVHA 231 (413)
Q Consensus 207 ~~~~~~l~~~~~~A~~~---g~~v~~H~ 231 (413)
.++.+|-+++++.+.+. .+++.+++
T Consensus 49 ~lt~~Er~~l~~~~~~~~~~~~~vi~gv 76 (284)
T cd00950 49 TLSDEEHEAVIEAVVEAVNGRVPVIAGT 76 (284)
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEecc
Confidence 44555555555444432 24455554
No 248
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=40.84 E-value=1.9e+02 Score=23.56 Aligned_cols=66 Identities=14% Similarity=0.119 Sum_probs=39.8
Q ss_pred CCcEEecCCCEEeeeeeecccccCCCCC------C-----CccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHH
Q 015110 85 TGQVVDYGEAVIMPGLIDVHAHLDDPGR------T-----EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLK 153 (413)
Q Consensus 85 ~~~vID~~G~~vlPGlID~H~H~~~~~~------~-----~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~ 153 (413)
.+-++|+ ...+.|-+||+|.|..+-.+ . ...++.......-..|||.+.... ....+...+.
T Consensus 6 ~~~~fdl-dytiwP~~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASR------t~ap~iA~q~ 78 (144)
T KOG4549|consen 6 EAMQFDL-DYTIWPRLVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASR------TMAPQIASQG 78 (144)
T ss_pred ceeEEec-cceeeeEEEEecccccccccccCcccCcceeeeccchhHHHHHHHhcCcEEEEecC------CCCHHHHHHH
Confidence 3456776 57899999999999754211 0 113444555566689999887442 1234445555
Q ss_pred HHHH
Q 015110 154 VDAA 157 (413)
Q Consensus 154 ~~~~ 157 (413)
++..
T Consensus 79 L~~f 82 (144)
T KOG4549|consen 79 LETF 82 (144)
T ss_pred HHHh
Confidence 5444
No 249
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=40.67 E-value=3e+02 Score=25.48 Aligned_cols=41 Identities=24% Similarity=0.237 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015110 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 230 (413)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H 230 (413)
+-++++.+.|++++-+ |..+.++..+..+.++++|+....=
T Consensus 110 ~F~~~~~~aGvdgvii----------pDLP~ee~~~~~~~~~~~gi~~I~l 150 (263)
T CHL00200 110 KFIKKISQAGVKGLII----------PDLPYEESDYLISVCNLYNIELILL 150 (263)
T ss_pred HHHHHHHHcCCeEEEe----------cCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4577778899999865 2345678888999999999865443
No 250
>PLN02623 pyruvate kinase
Probab=40.64 E-value=4.5e+02 Score=27.47 Aligned_cols=149 Identities=13% Similarity=0.139 Sum_probs=73.5
Q ss_pred eEEEEECCEEEEcccCCCCCCCCCCCcEEecCCCEEeeeeeecccccCCCCCC------CccchHHHHHHHHhCCceEEE
Q 015110 61 GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT------EWEGFPSGTKAAAAGGITTLI 134 (413)
Q Consensus 61 ~~V~I~dG~I~~Ig~~~~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~~------~~e~~~~~~~~al~~GvTTv~ 134 (413)
..|+++||+|.-.-.... ++ .+-+ .++-.|.+-.|-++..++.. +..| ....+-++..|+-.+.
T Consensus 227 d~IlidDG~i~l~V~~~~------~~-~v~~--~V~~gG~L~s~KgvNlpg~~~~lp~lTekD-~~di~f~~~~~vD~ia 296 (581)
T PLN02623 227 DMLLVDGGMMSLAVKSKT------SD-SVKC--EVVDGGELKSRRHLNVRGKSATLPSITEKD-WEDIKFGVENKVDFYA 296 (581)
T ss_pred CEEEEeCCeEEEEEEEEE------CC-EEEE--EEEeceEecCCCCCCCCCCcCCCCCCCHHH-HHHHHHHHHcCCCEEE
Confidence 358899998865322111 11 1111 23345555555554443321 1112 2234567788988775
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecCCCCC-CCCC-CCHHH
Q 015110 135 DMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN-DFPM-TNASH 212 (413)
Q Consensus 135 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~~~-~~~~-~~~~~ 212 (413)
--. ..+.+.+....+...... -+.....-+ +..+.++.++++++ |++++-+ ++.... ..+. --...
T Consensus 297 lSF------Vr~a~DV~~~r~~l~~~~-~~~~iiakI--Et~eaVeNldeIl~-g~DgImI--grgDLgvelg~~~v~~~ 364 (581)
T PLN02623 297 VSF------VKDAQVVHELKDYLKSCN-ADIHVIVKI--ESADSIPNLHSIIT-ASDGAMV--ARGDLGAELPIEEVPLL 364 (581)
T ss_pred ECC------CCCHHHHHHHHHHHHHcC-CcceEEEEE--CCHHHHHhHHHHHH-hCCEEEE--CcchhhhhcCcHHHHHH
Confidence 332 223444444333332111 111111111 23455677888777 8887643 332111 0111 11346
Q ss_pred HHHHHHHHHhcCCCEEEec
Q 015110 213 IKEGLSVLARYKRPLLVHA 231 (413)
Q Consensus 213 l~~~~~~A~~~g~~v~~H~ 231 (413)
.+++++.++++|+++.+..
T Consensus 365 qk~Ii~~~~~~gKpvivaT 383 (581)
T PLN02623 365 QEEIIRRCRSMGKPVIVAT 383 (581)
T ss_pred HHHHHHHHHHhCCCEEEEC
Confidence 7888899999999998654
No 251
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=40.05 E-value=39 Score=32.50 Aligned_cols=86 Identities=17% Similarity=0.139 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHHhcCCC-EEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCC
Q 015110 207 MTNASHIKEGLSVLARYKRP-LLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 285 (413)
Q Consensus 207 ~~~~~~l~~~~~~A~~~g~~-v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~ 285 (413)
+.+.+.|+++++..+.+++- ++.|..|... +..-....|...+..+-. .
T Consensus 14 f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~----------------~rle~~~~P~lt~~ga~~--------~------ 63 (329)
T cd06568 14 FFTVAEVKRYIDLLALYKLNVLHLHLTDDQG----------------WRIEIKSWPKLTEIGGST--------E------ 63 (329)
T ss_pred CcCHHHHHHHHHHHHHhCCcEEEEEeecCCc----------------ceeeecCccccccccccc--------c------
Confidence 56899999999999999884 6999876542 111112233222111100 0
Q ss_pred CCceEEEEccCChhhHHHHHHHHHHCCCCEEEEc-ccccc
Q 015110 286 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVET-CPHYL 324 (413)
Q Consensus 286 ~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~-~p~~l 324 (413)
...-+-.+.|.. +-.++++.|+++|+.|.+|+ .|.|.
T Consensus 64 -~~~~~~~~YT~~-di~elv~yA~~rgI~vIPEiD~PGH~ 101 (329)
T cd06568 64 -VGGGPGGYYTQE-DYKDIVAYAAERHITVVPEIDMPGHT 101 (329)
T ss_pred -cCCCCCCcCCHH-HHHHHHHHHHHcCCEEEEecCCcHHH
Confidence 000112234444 67788888999999988887 55444
No 252
>PLN02591 tryptophan synthase
Probab=39.74 E-value=1.8e+02 Score=26.80 Aligned_cols=124 Identities=20% Similarity=0.158 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccC
Q 015110 177 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 256 (413)
Q Consensus 177 ~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~ 256 (413)
..++.++.+.+.|++-+.+.+-++. |..+-..++++...|-+.|..+.-=. +.+. .+.+. ..-+.-.+.|
T Consensus 17 ~~~~~~~~l~~~Gad~iElGiPfSD----P~aDGpvIq~a~~rAL~~G~~~~~~~---~~~~-~~r~~--~~~p~ilm~Y 86 (250)
T PLN02591 17 TTAEALRLLDACGADVIELGVPYSD----PLADGPVIQAAATRALEKGTTLDSVI---SMLK-EVAPQ--LSCPIVLFTY 86 (250)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCC----CcccCHHHHHHHHHHHHcCCCHHHHH---HHHH-HHhcC--CCCCEEEEec
Confidence 3456677777888888877543332 34455555555555544443211000 0000 00000 0001111222
Q ss_pred CCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccc
Q 015110 257 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCP 321 (413)
Q Consensus 257 ~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p 321 (413)
.+ |. -..++++.++.+++.|..+ +.+.-+.-. +.-++.+.+++.|+....=++|
T Consensus 87 ~N--~i--~~~G~~~F~~~~~~aGv~G------viipDLP~e-e~~~~~~~~~~~gl~~I~lv~P 140 (250)
T PLN02591 87 YN--PI--LKRGIDKFMATIKEAGVHG------LVVPDLPLE-ETEALRAEAAKNGIELVLLTTP 140 (250)
T ss_pred cc--HH--HHhHHHHHHHHHHHcCCCE------EEeCCCCHH-HHHHHHHHHHHcCCeEEEEeCC
Confidence 11 11 1235666666666543221 344455544 6667777777777765554545
No 253
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=38.65 E-value=2.6e+02 Score=26.23 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEecC
Q 015110 208 TNASHIKEGLSVLARYKRPLLVHAE 232 (413)
Q Consensus 208 ~~~~~l~~~~~~A~~~g~~v~~H~e 232 (413)
.+.+.++++++.|++.+.|+.+-..
T Consensus 26 ~nlE~~~AileaA~e~~sPvIiq~S 50 (286)
T COG0191 26 NNLETLQAILEAAEEEKSPVIIQFS 50 (286)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEec
Confidence 4678888888888888888888753
No 254
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=38.05 E-value=2e+02 Score=26.89 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=32.5
Q ss_pred HHHHHHHHHc-CCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc---CCCEEEecCC
Q 015110 179 ASALEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEM 233 (413)
Q Consensus 179 ~~~l~~l~~~-G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e~ 233 (413)
.+.++.+++. |+.++-+.- .. +.++.++.+|-+++++.+.+. .+++.+++..
T Consensus 24 ~~~i~~l~~~~Gv~gi~~~G-st--GE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~ 79 (288)
T cd00954 24 RAIVDYLIEKQGVDGLYVNG-ST--GEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGS 79 (288)
T ss_pred HHHHHHHHhcCCCCEEEECc-CC--cCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCC
Confidence 4556666778 998874432 11 345667888877777766542 3567777643
No 255
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=37.88 E-value=52 Score=29.79 Aligned_cols=105 Identities=11% Similarity=0.070 Sum_probs=61.0
Q ss_pred chHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecC---Cchhh-----HHHHHHHHHc
Q 015110 117 GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP---ENAYN-----ASALEALLNA 188 (413)
Q Consensus 117 ~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~l~~l~~~ 188 (413)
++...++.++..|+.+++..|. .+....+...+ .....+.-.++.. ..... ..++++.++.
T Consensus 20 ~~~~~~~~a~~~~~~av~v~p~----------~~~~~~~~~~~-~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~ 88 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVTPG----------YVKPAAELLAG-SGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRL 88 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEEGG----------GHHHHHHHSTT-STSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHT
T ss_pred hHHHHHHHHHHhCCCEEEECHH----------HHHHHHHHhhc-cccccceEEEeCCCCCccccccccchHHHHHHHHHc
Confidence 5677788899999999985541 12222222222 1112332222211 11122 6788899999
Q ss_pred CCcEEEEeecCCCC-CCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015110 189 GVLGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (413)
Q Consensus 189 G~~~ik~~~~~~~~-~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e 232 (413)
|++.+++.+.+... .+......+++.++.+.|+++++++.+.+.
T Consensus 89 GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~ 133 (236)
T PF01791_consen 89 GADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPY 133 (236)
T ss_dssp T-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEEC
T ss_pred CCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 99999886544100 000112346899999999999999999853
No 256
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=37.86 E-value=3.5e+02 Score=25.43 Aligned_cols=110 Identities=16% Similarity=0.229 Sum_probs=54.2
Q ss_pred HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-ee--eEEeeceecCC----c----hhhHHHHHHHHH
Q 015110 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YV--DVGFWGGLVPE----N----AYNASALEALLN 187 (413)
Q Consensus 119 ~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~----~----~~~~~~l~~l~~ 187 (413)
....+.++..|+|++.--. ...|...+.+.-++..+.+.... .+ .++-.++.... . -...++..+.++
T Consensus 87 ~e~i~~ai~~GFtSVM~Dg-S~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~ 165 (286)
T PRK12738 87 LDDIRRKVHAGVRSAMIDG-SHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVE 165 (286)
T ss_pred HHHHHHHHHcCCCeEeecC-CCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHH
Confidence 3467889999999995332 22332223333333333333211 11 11211111111 0 113566666665
Q ss_pred -cCCcEEEEeecC-CCC-CCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015110 188 -AGVLGLKSFMCP-SGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (413)
Q Consensus 188 -~G~~~ik~~~~~-~~~-~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e 232 (413)
-|++.+-+..+. +|. ...|..+-+.|+++-+ ..++|+.+|--
T Consensus 166 ~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~---~~~vPLVLHGg 210 (286)
T PRK12738 166 LTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIRE---VVDVPLVLHGA 210 (286)
T ss_pred HhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHH---HhCCCEEEeCC
Confidence 488877654321 221 1124566666666644 45899999963
No 257
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=37.82 E-value=79 Score=30.72 Aligned_cols=95 Identities=16% Similarity=0.135 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHhcCCC-EEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHH--HHHHhhcccCC
Q 015110 207 MTNASHIKEGLSVLARYKRP-LLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIREL--LTVAKDTRTDG 283 (413)
Q Consensus 207 ~~~~~~l~~~~~~A~~~g~~-v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~--~~~a~~~~~~~ 283 (413)
+++.+.++++++.++.+++- ++.|..|...- ..-.+..|...+..+-... ......
T Consensus 14 f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~----------------rle~~~~P~Lt~~ga~~~~~~~~~~~~----- 72 (357)
T cd06563 14 FFPVDEVKRFIDLMALYKLNVFHWHLTDDQGW----------------RIEIKKYPKLTEVGAWRGPTEIGLPQG----- 72 (357)
T ss_pred CcCHHHHHHHHHHHHHhccceEEEeeecCCCc----------------eecccCcchhhhcccccCccccccccc-----
Confidence 46889999999999998884 79998665321 0111222322211000000 000000
Q ss_pred CCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEc-ccccc
Q 015110 284 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVET-CPHYL 324 (413)
Q Consensus 284 ~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~-~p~~l 324 (413)
..+..-+-.+.|.. +-.++++.|+++|+.|..|+ +|.|.
T Consensus 73 -~~~~~~~~~~YT~~-di~eiv~yA~~rgI~VIPEID~PGH~ 112 (357)
T cd06563 73 -GGDGTPYGGFYTQE-EIREIVAYAAERGITVIPEIDMPGHA 112 (357)
T ss_pred -ccCCCccCceECHH-HHHHHHHHHHHcCCEEEEecCCchhH
Confidence 00111122344444 77789999999999999988 55554
No 258
>PRK08609 hypothetical protein; Provisional
Probab=37.44 E-value=5e+02 Score=27.10 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=29.2
Q ss_pred Eeeeee-------ecccccCCCCCCCccchHHHHHHHHhCCceEEEeCC
Q 015110 96 IMPGLI-------DVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMP 137 (413)
Q Consensus 96 vlPGlI-------D~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~ 137 (413)
-+|=|| |.|+|..... ...++...++.|.+.|++.+.--.
T Consensus 324 ~lp~lv~~~d~~~DlH~HT~~sD--g~~sleemv~~A~~~Gl~~i~iTd 370 (570)
T PRK08609 324 DLSNLITLSDIQGDLHMHTTWSD--GAFSIEEMVEACIAKGYEYMAITD 370 (570)
T ss_pred hchhhhhhHhhcCCccccCCCCC--CCCCHHHHHHHHHHCCCCEEEEeC
Confidence 456654 9999987542 234566788899999999987654
No 259
>PRK06256 biotin synthase; Validated
Probab=37.33 E-value=3e+02 Score=26.22 Aligned_cols=111 Identities=15% Similarity=0.061 Sum_probs=58.3
Q ss_pred ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEE
Q 015110 115 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 194 (413)
Q Consensus 115 ~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik 194 (413)
.+.+....+.+.+.|++.+.....+..|.....+.+.+.++.......+.+....+. -..+.++.+.++|+..+.
T Consensus 93 ~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~-----l~~e~l~~LkeaG~~~v~ 167 (336)
T PRK06256 93 IEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGL-----LTEEQAERLKEAGVDRYN 167 (336)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCc-----CCHHHHHHHHHhCCCEEe
Confidence 455566677777889876654321222222222344444444443322233222221 224567788888988765
Q ss_pred EeecCCCC--C-CCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015110 195 SFMCPSGI--N-DFPMTNASHIKEGLSVLARYKRPLLVH 230 (413)
Q Consensus 195 ~~~~~~~~--~-~~~~~~~~~l~~~~~~A~~~g~~v~~H 230 (413)
..+..+.. . -.+..+.+...++++.+++.|+.+.++
T Consensus 168 ~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~ 206 (336)
T PRK06256 168 HNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSG 206 (336)
T ss_pred cCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccC
Confidence 43211000 0 012236677888999999999877655
No 260
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=37.28 E-value=3.1e+02 Score=26.36 Aligned_cols=50 Identities=16% Similarity=0.048 Sum_probs=27.2
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015110 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (413)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e 232 (413)
..+.++++.+.|+..+.+.. + ..+....+.+.++++..++.+..+.+|+.
T Consensus 75 I~e~~~~~~~~G~~~i~l~g---G--~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~ 124 (343)
T TIGR03551 75 IAERAAEAWKAGATEVCIQG---G--IHPDLDGDFYLDILRAVKEEVPGMHIHAF 124 (343)
T ss_pred HHHHHHHHHHCCCCEEEEEe---C--CCCCCCHHHHHHHHHHHHHHCCCceEEec
Confidence 34455555556766554431 1 12334566667777777776544555553
No 261
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=37.23 E-value=2.2e+02 Score=25.23 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=54.2
Q ss_pred ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEE
Q 015110 115 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 194 (413)
Q Consensus 115 ~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik 194 (413)
.+......++++++|++.+---. ++ + ...+.++...+..... +.++.. .+. ..+.++..++.|+.++-
T Consensus 21 ~~~~~~~~~a~~~gGi~~iEvt~-~~-~--~~~~~i~~l~~~~~~~--~~iGaG-TV~-----~~~~~~~a~~aGA~fiv 88 (206)
T PRK09140 21 PDEALAHVGALIEAGFRAIEIPL-NS-P--DPFDSIAALVKALGDR--ALIGAG-TVL-----SPEQVDRLADAGGRLIV 88 (206)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeC-CC-c--cHHHHHHHHHHHcCCC--cEEeEE-ecC-----CHHHHHHHHHcCCCEEE
Confidence 34556678889999999774322 21 1 2334444443332211 222211 111 23567888889997763
Q ss_pred EeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhch
Q 015110 195 SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSE 238 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~ 238 (413)
. |..+.+ +.+.+++.|.++..=+.+.+++.
T Consensus 89 s----------p~~~~~----v~~~~~~~~~~~~~G~~t~~E~~ 118 (206)
T PRK09140 89 T----------PNTDPE----VIRRAVALGMVVMPGVATPTEAF 118 (206)
T ss_pred C----------CCCCHH----HHHHHHHCCCcEEcccCCHHHHH
Confidence 2 344543 44556678888777677766543
No 262
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=36.77 E-value=3.6e+02 Score=25.29 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=54.4
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-ee--eEEeeceecCC-----c---hhhHHHHHHHHH-
Q 015110 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YV--DVGFWGGLVPE-----N---AYNASALEALLN- 187 (413)
Q Consensus 120 ~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~-----~---~~~~~~l~~l~~- 187 (413)
.....++..|+|++.--. ...|...+.+.-++..+.+.... .+ .++..++.... . -...++..+.++
T Consensus 88 e~i~~ai~~GftSVMiDg-S~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~ 166 (284)
T PRK12737 88 DDIKKKVRAGIRSVMIDG-SHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVER 166 (284)
T ss_pred HHHHHHHHcCCCeEEecC-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHH
Confidence 467899999999985332 22333233333333334333221 11 11211111111 0 113456666664
Q ss_pred cCCcEEEEeecC-CCC-CCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015110 188 AGVLGLKSFMCP-SGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (413)
Q Consensus 188 ~G~~~ik~~~~~-~~~-~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e 232 (413)
-|++.+-+..+. +|. ...|..+.+.|+++-+ ..++|+.+|--
T Consensus 167 TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~---~~~iPLVlHGg 210 (284)
T PRK12737 167 TGIDSLAVAIGTAHGLYKGEPKLDFERLAEIRE---KVSIPLVLHGA 210 (284)
T ss_pred hCCCEEeeccCccccccCCCCcCCHHHHHHHHH---HhCCCEEEeCC
Confidence 588776554321 221 1124567777777644 44899999963
No 263
>PRK09234 fbiC FO synthase; Reviewed
Probab=36.64 E-value=2.4e+02 Score=31.04 Aligned_cols=51 Identities=18% Similarity=0.057 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCCh
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME 234 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~ 234 (413)
.+..++..+.|+..+.+.. |. .+..+.+.+.++++..++..-.+.+|+.++
T Consensus 563 ~~~a~ea~~~G~tev~i~g---G~--~p~~~~~~y~~lir~IK~~~p~i~i~afsp 613 (843)
T PRK09234 563 ADRAWEAWVAGATEVCMQG---GI--HPELPGTGYADLVRAVKARVPSMHVHAFSP 613 (843)
T ss_pred HHHHHHHHHCCCCEEEEec---CC--CCCcCHHHHHHHHHHHHHhCCCeeEEecCh
Confidence 4455666678888776542 22 234577788888888888766688887655
No 264
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=36.55 E-value=1.7e+02 Score=26.20 Aligned_cols=105 Identities=11% Similarity=0.009 Sum_probs=56.4
Q ss_pred CccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-C-eeeE--Eeecee-cCCchhhHHHHHHHHHc
Q 015110 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-I-YVDV--GFWGGL-VPENAYNASALEALLNA 188 (413)
Q Consensus 114 ~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~--~~~~~~-~~~~~~~~~~l~~l~~~ 188 (413)
..++.....+.+..+|+..++..++ .+....+...+. . .... ....++ .........+++++++.
T Consensus 19 ~~~d~~~~~~~~~~~g~~av~v~~~----------~~~~~~~~~~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~ 88 (235)
T cd00958 19 GLEDPEETVKLAAEGGADAVALTKG----------IARAYGREYAGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRL 88 (235)
T ss_pred cccCHHHHHHHHHhcCCCEEEeChH----------HHHhcccccCCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHC
Confidence 4467778899999999999976541 111111111111 1 0000 000011 11122234568888899
Q ss_pred CCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015110 189 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 230 (413)
Q Consensus 189 G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H 230 (413)
|++.+.+........ .....+++.++.+.++++|+++.+-
T Consensus 89 Ga~~v~~~~~~~~~~--~~~~~~~i~~v~~~~~~~g~~~iie 128 (235)
T cd00958 89 GADAVGVTVYVGSEE--EREMLEELARVAAEAHKYGLPLIAW 128 (235)
T ss_pred CCCEEEEEEecCCch--HHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 998876544322100 0112347788888889999998873
No 265
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=35.86 E-value=1.1e+02 Score=28.38 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc--CCCEEEecCChh
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY--KRPLLVHAEMEK 235 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~--g~~v~~H~e~~~ 235 (413)
.+.++++.+.|+..|.+- . .....++..+.++++..++. ++++.+|++|..
T Consensus 152 ~~~~~~~~~~Ga~~i~l~--D----T~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~ 204 (274)
T cd07938 152 AEVAERLLDLGCDEISLG--D----TIGVATPAQVRRLLEAVLERFPDEKLALHFHDTR 204 (274)
T ss_pred HHHHHHHHHcCCCEEEEC--C----CCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCC
Confidence 345566667898876542 1 22357888999998888764 488999998764
No 266
>PLN02321 2-isopropylmalate synthase
Probab=35.59 E-value=2.4e+02 Score=29.84 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-----CCCEEEecCChh
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-----KRPLLVHAEMEK 235 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~-----g~~v~~H~e~~~ 235 (413)
.+.++.+.+.|+..|.+- +...+..++++.++++..++. ++++.+|++|.-
T Consensus 243 ~~~~~~a~~aGa~~I~L~------DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~ 298 (632)
T PLN02321 243 YRILGEVIKAGATTLNIP------DTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQNDL 298 (632)
T ss_pred HHHHHHHHHcCCCEEEec------ccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCC
Confidence 355566677898876542 123457888888888887654 466999998865
No 267
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=35.58 E-value=2.9e+02 Score=26.78 Aligned_cols=87 Identities=13% Similarity=0.162 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCch--HHHHHHHHHHHHHHhhcccCCCCC
Q 015110 209 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPP--SWEEAAIRELLTVAKDTRTDGPAE 286 (413)
Q Consensus 209 ~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~E~~~v~~~~~~a~~~~~~~~~~ 286 (413)
+++.+.++++.+.++|+|+.+-.-+++.+..++.--. ..+|- .+-.....++++++.++
T Consensus 144 dpekfa~ave~v~~~~~pv~l~s~dpevmkaaLev~~------------dqkPllYaAte~n~~e~~klav~y------- 204 (467)
T COG1456 144 DPEKFAEAVEKVAEAGLPVILCSFDPEVMKAALEVVK------------DQKPLLYAATEDNWKEFAKLAVEY------- 204 (467)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhh------------ccCceeeecccccHHHHHHHHhhc-------
Confidence 6788889999999999998888778776654443221 11221 01123567777888765
Q ss_pred CceEEEEccCChhhHHHHHHHHHHCCCC
Q 015110 287 GAHLHIVHLSDASSSLDLLMEAKTNGDS 314 (413)
Q Consensus 287 g~~vhi~H~s~~~~~~~~i~~ak~~G~~ 314 (413)
++++.+.-....++-..+...+++.|+.
T Consensus 205 ~vplvl~a~~dl~~lk~la~~~~~~Gi~ 232 (467)
T COG1456 205 KVPLVLSAFNDLDDLKNLAVTYAQAGIK 232 (467)
T ss_pred CCcEEEeccCCHHHHHHHHHHHHHcCCc
Confidence 7887776655552333455667788874
No 268
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=35.50 E-value=1.3e+02 Score=28.23 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-c-CCCEEEecCChh
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-Y-KRPLLVHAEMEK 235 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~-~-g~~v~~H~e~~~ 235 (413)
.+.++++.+.|+..+.+- +.....++.++.++++..++ + ++++.+|++|..
T Consensus 150 ~~~~~~~~~~G~~~i~l~------DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~ 202 (280)
T cd07945 150 FQLVDFLSDLPIKRIMLP------DTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDY 202 (280)
T ss_pred HHHHHHHHHcCCCEEEec------CCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCC
Confidence 445566677898876542 12345788889999988876 3 588999998764
No 269
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=35.37 E-value=3e+02 Score=25.87 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHCCCCEEEEccccccccccccCCCCCcceEEcCCCCChhcHHHHHHHHhcCCcc----EEcCCCCCCCh
Q 015110 300 SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID----MLSSDHSPTVP 374 (413)
Q Consensus 300 ~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~i~----~i~sDh~p~~~ 374 (413)
.+.++++.|+..|+.|-+| ..++.-.++....... ..--+.++++.....+. --+| .|||=|..+..
T Consensus 115 ~T~~vv~~ah~~gv~VEaE--lG~i~g~ed~~~~~~~---~~~~~TdP~~a~~Fv~~---TgvD~LAvaiGt~HG~y~~ 185 (287)
T PF01116_consen 115 ITREVVEYAHAYGVSVEAE--LGHIGGKEDGIESEEE---TESLYTDPEEAKEFVEE---TGVDALAVAIGTAHGMYKG 185 (287)
T ss_dssp HHHHHHHHHHHTT-EEEEE--ESBSSSSCTTCSSSTT----TTCSSSHHHHHHHHHH---HTTSEEEE-SSSBSSSBSS
T ss_pred HHHHHHHhhhhhCCEEEEE--eeeeeccCCCcccccc---ccccccCHHHHHHHHHH---hCCCEEEEecCccccccCC
Confidence 3446777788887555444 4445433322211100 11223344554444433 3344 46777876544
No 270
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=35.28 E-value=1.4e+02 Score=26.67 Aligned_cols=94 Identities=18% Similarity=0.201 Sum_probs=55.2
Q ss_pred cchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEE
Q 015110 116 EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 195 (413)
Q Consensus 116 e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~ 195 (413)
+.....+++.+.+|++++---. ++ | ...+.++...+... +..+.- + .-...+.++++++.|+..+.
T Consensus 25 e~a~~~a~Ali~gGi~~IEITl-~s-p--~a~e~I~~l~~~~p-~~lIGA----G----TVL~~~q~~~a~~aGa~fiV- 90 (211)
T COG0800 25 EEALPLAKALIEGGIPAIEITL-RT-P--AALEAIRALAKEFP-EALIGA----G----TVLNPEQARQAIAAGAQFIV- 90 (211)
T ss_pred HHHHHHHHHHHHcCCCeEEEec-CC-C--CHHHHHHHHHHhCc-ccEEcc----c----cccCHHHHHHHHHcCCCEEE-
Confidence 3344567788999999885332 32 2 23455555444332 222111 1 11124678888999997652
Q ss_pred eecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhh
Q 015110 196 FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG 236 (413)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~ 236 (413)
+ |.++++ +++.|.++|++++-=+-+..+
T Consensus 91 --s-------P~~~~e----v~~~a~~~~ip~~PG~~TptE 118 (211)
T COG0800 91 --S-------PGLNPE----VAKAANRYGIPYIPGVATPTE 118 (211)
T ss_pred --C-------CCCCHH----HHHHHHhCCCcccCCCCCHHH
Confidence 2 345654 566788899998887766654
No 271
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=35.24 E-value=4.2e+02 Score=25.52 Aligned_cols=95 Identities=15% Similarity=0.106 Sum_probs=57.1
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecCC
Q 015110 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPS 200 (413)
Q Consensus 121 ~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~ 200 (413)
..++.-+.|.--++.. -|.....+++....+...-....|+.|. ....-+..+.|+..+.+ +|.
T Consensus 41 QI~~L~~aG~dIVRvt----v~~~e~A~A~~~Ik~~~~vPLVaDiHf~----------~rla~~~~~~g~~k~RI--NPG 104 (361)
T COG0821 41 QIKALERAGCDIVRVT----VPDMEAAEALKEIKQRLNVPLVADIHFD----------YRLALEAAECGVDKVRI--NPG 104 (361)
T ss_pred HHHHHHHcCCCEEEEe----cCCHHHHHHHHHHHHhCCCCEEEEeecc----------HHHHHHhhhcCcceEEE--CCc
Confidence 3455567888777743 2434445566655554433333444442 23344555677776665 332
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhh
Q 015110 201 GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG 236 (413)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~ 236 (413)
. .-..+.+.++++.|+++|+|+-+=+..-.+
T Consensus 105 N-----ig~~~~v~~vVe~Ak~~g~piRIGVN~GSL 135 (361)
T COG0821 105 N-----IGFKDRVREVVEAAKDKGIPIRIGVNAGSL 135 (361)
T ss_pred c-----cCcHHHHHHHHHHHHHcCCCEEEecccCch
Confidence 2 235668999999999999999887644433
No 272
>PRK08227 autoinducer 2 aldolase; Validated
Probab=35.21 E-value=49 Score=30.65 Aligned_cols=48 Identities=10% Similarity=0.198 Sum_probs=32.9
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEE
Q 015110 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 229 (413)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~ 229 (413)
..+++.++.|++++++.....+ .......+.+.++.+.|+++|+|+.+
T Consensus 98 ~sVeeAvrlGAdAV~~~v~~Gs--~~E~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 98 VDMEDAVRLNACAVAAQVFIGS--EYEHQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred ecHHHHHHCCCCEEEEEEecCC--HHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 4577888999998877654431 11111334677788999999999877
No 273
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=34.89 E-value=56 Score=22.78 Aligned_cols=34 Identities=21% Similarity=0.055 Sum_probs=21.7
Q ss_pred ecccccCCCCCCCccchHHHHHHHHhCCceEEEe
Q 015110 102 DVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLID 135 (413)
Q Consensus 102 D~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d 135 (413)
|.|+|................+.+.+.|...+.-
T Consensus 1 dlH~Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~i 34 (67)
T smart00481 1 DLHVHSDYSLLDGALSPEELVKRAKELGLKAIAI 34 (67)
T ss_pred CCccccCCccccccCCHHHHHHHHHHcCCCEEEE
Confidence 6788887653232334555677778888877753
No 274
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=34.86 E-value=3.9e+02 Score=25.06 Aligned_cols=51 Identities=16% Similarity=0.166 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc---CCCEEEecC
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAE 232 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e 232 (413)
.+.++.+++.|+.++-+.-+ . +.++.++.+|-+++++.+.+. .++|.+|+.
T Consensus 29 ~~li~~l~~~Gv~gi~v~Gs-t--GE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~ 82 (296)
T TIGR03249 29 RENIEWLLGYGLEALFAAGG-T--GEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG 82 (296)
T ss_pred HHHHHHHHhcCCCEEEECCC-C--cCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 34555566678877644211 1 234566777777777665542 357777753
No 275
>PRK08005 epimerase; Validated
Probab=34.84 E-value=3.3e+02 Score=24.26 Aligned_cols=98 Identities=19% Similarity=0.185 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCcEEEE-eecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec--CChhhchhhHhhccCcCCcccccc
Q 015110 179 ASALEALLNAGVLGLKS-FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA--EMEKGSERHVKLEDDTLDTRSYST 255 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~-~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~--e~~~~~~~~~~~~~~~~~~~~~~~ 255 (413)
.++++++.+.|++.+-+ .|...-..+ -.+.++.++.+.+. .++++.+|. ++++.
T Consensus 16 ~~el~~l~~~g~d~lHiDvMDG~FVPN-~tfG~~~i~~l~~~---t~~~~DvHLMv~~P~~------------------- 72 (210)
T PRK08005 16 AEALTALHDAPLGSLHLDIEDTSFINN-ITFGMKTIQAVAQQ---TRHPLSFHLMVSSPQR------------------- 72 (210)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCcCCc-cccCHHHHHHHHhc---CCCCeEEEeccCCHHH-------------------
Confidence 46778888888887643 333221111 13466666665543 468899996 33221
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEcccc
Q 015110 256 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPH 322 (413)
Q Consensus 256 ~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~ 322 (413)
-+..+++. |+.....|.-+.+...+.++..|+.|..+-.-..|.
T Consensus 73 ------------~i~~~~~~-----------gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~ 116 (210)
T PRK08005 73 ------------WLPWLAAI-----------RPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPA 116 (210)
T ss_pred ------------HHHHHHHh-----------CCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCC
Confidence 23333332 555667776532144577888888888877777774
No 276
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=34.75 E-value=3.9e+02 Score=25.06 Aligned_cols=106 Identities=15% Similarity=0.132 Sum_probs=55.1
Q ss_pred ccchHHHHHHHHhCCceEEEeCCCCCCC-CCCcHHHHHHHH----HHHhcCCeeeEEeeceec-CCchhhHHHHHHHHHc
Q 015110 115 WEGFPSGTKAAAAGGITTLIDMPLNSDP-STISTETLKLKV----DAAEKRIYVDVGFWGGLV-PENAYNASALEALLNA 188 (413)
Q Consensus 115 ~e~~~~~~~~al~~GvTTv~d~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~ 188 (413)
.+.+....+..+..||..++-.+ .+.. ...+.+.-.+.+ +...++. ....+.. ....+.++..+...+.
T Consensus 20 ~~~l~~lv~~~~~~Gv~gi~v~G-stGE~~~Ls~~Er~~l~~~~~~~~~g~~----pvi~gv~~~~t~~ai~~a~~A~~~ 94 (294)
T TIGR02313 20 EEALRELIEFQIEGGSHAISVGG-TSGEPGSLTLEERKQAIENAIDQIAGRI----PFAPGTGALNHDETLELTKFAEEA 94 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEECc-cCcccccCCHHHHHHHHHHHHHHhCCCC----cEEEECCcchHHHHHHHHHHHHHc
Confidence 34456667778899999998776 2221 122222222222 2222221 2222222 2233456666677778
Q ss_pred CCcEEEEeecCCCCCCCCCCCHHHHHHHHHH-HHhc-CCCEEEe
Q 015110 189 GVLGLKSFMCPSGINDFPMTNASHIKEGLSV-LARY-KRPLLVH 230 (413)
Q Consensus 189 G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~-A~~~-g~~v~~H 230 (413)
|++++-+.. | .+...+.+.+.+-++. +... ++|+.+.
T Consensus 95 Gad~v~v~p-P----~y~~~~~~~l~~~f~~ia~a~~~lpv~iY 133 (294)
T TIGR02313 95 GADAAMVIV-P----YYNKPNQEALYDHFAEVADAVPDFPIIIY 133 (294)
T ss_pred CCCEEEEcC-c----cCCCCCHHHHHHHHHHHHHhccCCCEEEE
Confidence 999876532 1 1112355655555444 4456 7888886
No 277
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=34.55 E-value=2.4e+02 Score=28.96 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-----CCCEEEecCChhh
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-----KRPLLVHAEMEKG 236 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~-----g~~v~~H~e~~~~ 236 (413)
.+.++++.+.|+..+.+- +......+..+.++++..++. ++++.+|++|.-.
T Consensus 242 ~~~~~~a~~~Gad~I~l~------DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~G 298 (503)
T PLN03228 242 CKILGEAIKAGATSVGIA------DTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLG 298 (503)
T ss_pred HHHHHHHHhcCCCEEEEe------cCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCCcC
Confidence 445566667899876442 123456888888888887753 4789999987753
No 278
>PRK08123 histidinol-phosphatase; Reviewed
Probab=34.16 E-value=50 Score=30.67 Aligned_cols=36 Identities=17% Similarity=0.010 Sum_probs=26.4
Q ss_pred eeecccccCCCCCCCccchHHHHHHHHhCCceEEEe
Q 015110 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLID 135 (413)
Q Consensus 100 lID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d 135 (413)
++|.|+|.........+.+....++|.+.|++.+.-
T Consensus 3 ~~D~H~HT~~s~h~~~~~~e~~v~~Ai~~Gl~~i~~ 38 (270)
T PRK08123 3 KRDGHTHTPFCPHGSKDDLEAYIERAIELGFTEITF 38 (270)
T ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHcCCcEEEE
Confidence 479999997653222345677789999999999864
No 279
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=34.12 E-value=4.4e+02 Score=25.42 Aligned_cols=165 Identities=9% Similarity=0.067 Sum_probs=84.1
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecC
Q 015110 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCP 199 (413)
Q Consensus 120 ~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~ 199 (413)
...++..+.|.--++..- |.....+.+....+...-....|+.|. ....-..++.|+..+.+ .|
T Consensus 38 ~QI~~L~~aGceiVRvav----p~~~~A~al~~I~~~~~iPlVADIHFd----------~~lAl~a~~~g~dkiRI--NP 101 (346)
T TIGR00612 38 AQIRALEEAGCDIVRVTV----PDRESAAAFEAIKEGTNVPLVADIHFD----------YRLAALAMAKGVAKVRI--NP 101 (346)
T ss_pred HHHHHHHHcCCCEEEEcC----CCHHHHHhHHHHHhCCCCCEEEeeCCC----------cHHHHHHHHhccCeEEE--CC
Confidence 345566788888777432 333344444444332211122233321 11222345678887766 33
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhc
Q 015110 200 SGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDT 279 (413)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~ 279 (413)
.. .-+.+.++++++.|+++|+++-+=...-..-.+.+.+++ ...|. +-.++..+-++++++.
T Consensus 102 GN-----ig~~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg------------~~t~e-amveSAl~~v~~le~~ 163 (346)
T TIGR00612 102 GN-----IGFRERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYG------------DATAE-AMVQSALEEAAILEKL 163 (346)
T ss_pred CC-----CCCHHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcC------------CCCHH-HHHHHHHHHHHHHHHC
Confidence 22 236789999999999999999887654443333333221 11222 2234445556677765
Q ss_pred ccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccc
Q 015110 280 RTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 329 (413)
Q Consensus 280 ~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~ 329 (413)
++ .+..+.+-.-.-. ..++..+...++ ++ ||-||-.++.
T Consensus 164 ~F----~diviS~KsSdv~-~~i~ayr~la~~-----~d-yPLHlGVTEA 202 (346)
T TIGR00612 164 GF----RNVVLSMKASDVA-ETVAAYRLLAER-----SD-YPLHLGVTEA 202 (346)
T ss_pred CC----CcEEEEEEcCCHH-HHHHHHHHHHhh-----CC-CCceeccccC
Confidence 42 3333333322222 333333333222 22 8888877764
No 280
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=34.00 E-value=4.1e+02 Score=25.10 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHCCCCEEEEcccc
Q 015110 299 SSSLDLLMEAKTNGDSITVETCPH 322 (413)
Q Consensus 299 ~~~~~~i~~ak~~G~~v~~e~~p~ 322 (413)
++-++.++.+.+.|+++..-+.|-
T Consensus 169 ~~Ri~al~~l~eaGi~~~v~v~PI 192 (297)
T COG1533 169 EERLEALKELSEAGIPVGLFVAPI 192 (297)
T ss_pred HHHHHHHHHHHHCCCeEEEEEecc
Confidence 466899999999999999888884
No 281
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=33.73 E-value=4e+02 Score=26.43 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=38.0
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCC--------CCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015110 178 NASALEALLNAGVLGLKSFMCPSGI--------NDFPMTNASHIKEGLSVLARYKRPLLVH 230 (413)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~--------~~~~~~~~~~l~~~~~~A~~~g~~v~~H 230 (413)
..+..+.|+.+|++++++.|....+ -+.|+ .-.+..++++|+++|+|+..-
T Consensus 302 T~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ--~TAVy~va~~A~q~gvpviAD 360 (503)
T KOG2550|consen 302 TKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQ--GTAVYKVAEFANQFGVPCIAD 360 (503)
T ss_pred eHHHHHHHHHccCceeEeccccCceeeeceeeeccCCc--ccchhhHHHHHHhcCCceeec
Confidence 4567788999999999998865321 01222 336788999999999999886
No 282
>PLN02389 biotin synthase
Probab=33.65 E-value=4.7e+02 Score=25.67 Aligned_cols=110 Identities=11% Similarity=-0.001 Sum_probs=61.8
Q ss_pred ccchHHHHHHHHhCCceEEEeCCC--CCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcE
Q 015110 115 WEGFPSGTKAAAAGGITTLIDMPL--NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLG 192 (413)
Q Consensus 115 ~e~~~~~~~~al~~GvTTv~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ 192 (413)
.+.+...++.+...|++.++-... .........+.+.+.++..... .+.+.... .....+.++++.++|++.
T Consensus 118 ~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~-~l~i~~s~-----G~l~~E~l~~LkeAGld~ 191 (379)
T PLN02389 118 KDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGM-GMEVCCTL-----GMLEKEQAAQLKEAGLTA 191 (379)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcC-CcEEEECC-----CCCCHHHHHHHHHcCCCE
Confidence 345566677778889999864210 0111111234444445554422 22222111 112357788888999987
Q ss_pred EEEeecCCC--CCC-CCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015110 193 LKSFMCPSG--IND-FPMTNASHIKEGLSVLARYKRPLLVH 230 (413)
Q Consensus 193 ik~~~~~~~--~~~-~~~~~~~~l~~~~~~A~~~g~~v~~H 230 (413)
+-..+..+. ... .+..+.+...+.++.|++.|+.+..|
T Consensus 192 ~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg 232 (379)
T PLN02389 192 YNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSG 232 (379)
T ss_pred EEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEE
Confidence 755433110 000 11247788889999999999998777
No 283
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=33.59 E-value=2.1e+02 Score=26.76 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=30.8
Q ss_pred HHHHHHHHH-cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc---CCCEEEecC
Q 015110 179 ASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAE 232 (413)
Q Consensus 179 ~~~l~~l~~-~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~e 232 (413)
.+.++.+++ .|+.++-+.-+ . +.+..++.+|-.++++.+.+. .++|.+++.
T Consensus 27 ~~li~~l~~~~Gv~gi~v~Gs-t--GE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg 81 (293)
T PRK04147 27 RRLVRFNIEKQGIDGLYVGGS-T--GEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG 81 (293)
T ss_pred HHHHHHHHhcCCCCEEEECCC-c--cccccCCHHHHHHHHHHHHHHhCCCCCEEecCC
Confidence 455666777 88888754211 1 234567878777777665542 356677663
No 284
>PRK05826 pyruvate kinase; Provisional
Probab=33.42 E-value=5.3e+02 Score=26.17 Aligned_cols=100 Identities=13% Similarity=0.127 Sum_probs=51.6
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecC
Q 015110 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCP 199 (413)
Q Consensus 120 ~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~ 199 (413)
...+.++..|+..+.--. ..+.+.++...+.......-+.....-+ +..+.++.++++++. ++++-+ ++
T Consensus 177 ~~i~~ald~g~d~I~~sf------V~saedv~~l~~~l~~~~~~~~~iiakI--Et~eav~nldeI~~~-~DgImI--gr 245 (465)
T PRK05826 177 ADIKFAAEQGVDYIAVSF------VRSAEDVEEARRLLREAGCPHAKIIAKI--ERAEAVDNIDEIIEA-SDGIMV--AR 245 (465)
T ss_pred HHHHHHHHCCCCEEEECC------CCCHHHHHHHHHHHHHcCCcCceEEEEE--cCHHHHHhHHHHHHH-cCEEEE--Cc
Confidence 446678899999886322 3344555544433321110011111111 233456677777765 565532 22
Q ss_pred CCCC-CCCC-CCHHHHHHHHHHHHhcCCCEEEe
Q 015110 200 SGIN-DFPM-TNASHIKEGLSVLARYKRPLLVH 230 (413)
Q Consensus 200 ~~~~-~~~~-~~~~~l~~~~~~A~~~g~~v~~H 230 (413)
...+ ..+. .-....+++++.|+++|+++.+=
T Consensus 246 gDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~A 278 (465)
T PRK05826 246 GDLGVEIPDEEVPGLQKKIIRKAREAGKPVITA 278 (465)
T ss_pred chhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEE
Confidence 2110 0111 12346778889999999998764
No 285
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=33.37 E-value=3.8e+02 Score=24.54 Aligned_cols=67 Identities=13% Similarity=0.030 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHH---HHHHHHHHHHhc-CCCEEEecCChhhchhhHhh
Q 015110 177 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNAS---HIKEGLSVLARY-KRPLLVHAEMEKGSERHVKL 243 (413)
Q Consensus 177 ~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~---~l~~~~~~A~~~-g~~v~~H~e~~~~~~~~~~~ 243 (413)
...+...++++.|+.-+-+....+..+..+....+ .+..+++..++. +.++++-..+.+.++.++..
T Consensus 25 ~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aaL~~ 95 (258)
T cd00423 25 KALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEVAEAALKA 95 (258)
T ss_pred HHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHHHHh
Confidence 34566777788899887765433211111122233 355666666554 88999988888887766654
No 286
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=33.35 E-value=1.2e+02 Score=29.24 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=36.9
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCC------CCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015110 178 NASALEALLNAGVLGLKSFMCPSGI------NDFPMTNASHIKEGLSVLARYKRPLLVH 230 (413)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~------~~~~~~~~~~l~~~~~~A~~~g~~v~~H 230 (413)
..+..++|+++|++.+|+.+.+..+ .+..+-....+.++.+.|+++|.++...
T Consensus 161 T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIAD 219 (346)
T PRK05096 161 TGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSD 219 (346)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEec
Confidence 3567888999999999998776421 0111122346778888889999988776
No 287
>PRK07360 FO synthase subunit 2; Reviewed
Probab=33.34 E-value=3.7e+02 Score=26.22 Aligned_cols=121 Identities=14% Similarity=0.088 Sum_probs=67.2
Q ss_pred CccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-CeeeEEeece-----ec-CCchhhHHHHHHHH
Q 015110 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGG-----LV-PENAYNASALEALL 186 (413)
Q Consensus 114 ~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~-~~~~~~~~~l~~l~ 186 (413)
+.+.+...++.+...|++.+.-.. +..|.....+.+...++..+.. ..+.+..... +. .......+.++++.
T Consensus 92 s~eeI~~~a~~a~~~G~~~i~l~~-G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e~l~~Lk 170 (371)
T PRK07360 92 TIAEILEKAAEAVKRGATEVCIQG-GLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEEVLKALK 170 (371)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEcc-CCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHHHHHHHH
Confidence 345666778888999999998775 4445433345555555555432 2222221100 00 00112346788888
Q ss_pred HcCCcEEEEeecCCCCC------CCC-CCCHHHHHHHHHHHHhcCCCE-----EEecCChhh
Q 015110 187 NAGVLGLKSFMCPSGIN------DFP-MTNASHIKEGLSVLARYKRPL-----LVHAEMEKG 236 (413)
Q Consensus 187 ~~G~~~ik~~~~~~~~~------~~~-~~~~~~l~~~~~~A~~~g~~v-----~~H~e~~~~ 236 (413)
++|+..+-- .+..-.. ..+ ..+.+...++++.|++.|+.+ .-|-|+.+.
T Consensus 171 eAGld~~~~-t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~ed 231 (371)
T PRK07360 171 DAGLDSMPG-TAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEH 231 (371)
T ss_pred HcCCCcCCC-cchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHH
Confidence 999876620 0000000 012 357778889999999999865 336665543
No 288
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=33.32 E-value=4e+02 Score=24.80 Aligned_cols=111 Identities=11% Similarity=0.029 Sum_probs=55.8
Q ss_pred ccchHHHHHHHHhC-CceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecC-CchhhHHHHHHHHHcCCcE
Q 015110 115 WEGFPSGTKAAAAG-GITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP-ENAYNASALEALLNAGVLG 192 (413)
Q Consensus 115 ~e~~~~~~~~al~~-GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~G~~~ 192 (413)
.+.+....+..+.. |++.++-++....-...+.+.-....+.......-++....+... ...+..+..+...+.|+++
T Consensus 20 ~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~ 99 (288)
T cd00954 20 EDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDA 99 (288)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCE
Confidence 34556667778889 999998776211111222222222222221100001222222322 2234456666667789998
Q ss_pred EEEeecCCCCCCCCCCCHHHHHHHHHH-HHhc-CCCEEEe
Q 015110 193 LKSFMCPSGINDFPMTNASHIKEGLSV-LARY-KRPLLVH 230 (413)
Q Consensus 193 ik~~~~~~~~~~~~~~~~~~l~~~~~~-A~~~-g~~v~~H 230 (413)
+-+.. +. +...+.+++.+-++. ++.. ++|+.+.
T Consensus 100 v~~~~-P~----y~~~~~~~i~~~~~~v~~a~~~lpi~iY 134 (288)
T cd00954 100 ISAIT-PF----YYKFSFEEIKDYYREIIAAAASLPMIIY 134 (288)
T ss_pred EEEeC-CC----CCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 85432 11 112355666665554 4556 7898885
No 289
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=33.18 E-value=4.8e+02 Score=25.58 Aligned_cols=120 Identities=18% Similarity=0.162 Sum_probs=68.4
Q ss_pred CccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeec---e-e----cCCchhhHHHHHHH
Q 015110 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG---G-L----VPENAYNASALEAL 185 (413)
Q Consensus 114 ~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~----~~~~~~~~~~l~~l 185 (413)
+.+.+...++.+.+.|+|.+.-.. +..|... .+-+....+..... +.++..+. . + ........+.+++|
T Consensus 91 s~eeI~~~~~~~~~~G~~Evli~g-G~~p~~~-~~y~~~~~~~ik~~-~p~~~i~a~s~~ei~~~~~~~~~s~~E~l~~L 167 (370)
T COG1060 91 SPEEILEEVREAVKRGITEVLIVG-GEHPELS-LEYYEELFRTIKEE-FPDLHIHALSAGEILFLAREGGLSYEEVLKRL 167 (370)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEec-CcCCCcc-hHHHHHHHHHHHHh-CcchhhcccCHHHhHHHHhccCCCHHHHHHHH
Confidence 456677778888999999998766 4445432 33444444444332 11222111 0 0 01112234558888
Q ss_pred HHcCCcEEEEeecC----C--CCCCCCCCCHHHHHHHHHHHHhcCCC-----EEEecCChhh
Q 015110 186 LNAGVLGLKSFMCP----S--GINDFPMTNASHIKEGLSVLARYKRP-----LLVHAEMEKG 236 (413)
Q Consensus 186 ~~~G~~~ik~~~~~----~--~~~~~~~~~~~~l~~~~~~A~~~g~~-----v~~H~e~~~~ 236 (413)
.++|.+.+-.+-.. . .....+-.+.+...++.+.|++.|++ +..|.|+.+.
T Consensus 168 k~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml~Gh~E~~ed 229 (370)
T COG1060 168 KEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLLGHVETRED 229 (370)
T ss_pred HHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEEecCCHHH
Confidence 88887654322110 0 00011346788999999999999987 4668888654
No 290
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]
Probab=32.77 E-value=4.3e+02 Score=24.96 Aligned_cols=136 Identities=19% Similarity=0.222 Sum_probs=68.0
Q ss_pred ecCCCEEeeeeeecccccCCCCCCCccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC---CeeeEE
Q 015110 90 DYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR---IYVDVG 166 (413)
Q Consensus 90 D~~G~~vlPGlID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 166 (413)
|-.-...-|.++|+|.|+........ .......+...|+.-++.++. .... .+...+.++.. .+..++
T Consensus 8 d~~~~~~~~~~~~~~~~~~~~~~~~d--~s~v~~~a~~~~v~~~~v~gt---~~~d----~~~~~~l~~~y~~~v~~t~G 78 (296)
T KOG3020|consen 8 DDGRNFTNPMLEDIYCHIQAHPSDSD--ASQVLERAVQAGVSKLIVTGT---SLKD----SKEALELAEKYPGSVYPTFG 78 (296)
T ss_pred hhhhhhcchhhchhhhccccCCCCcc--chHHHHHHHhccceEEEEeCC---Ccch----HHHHHHHHhhCCCceeeccC
Confidence 33344556789999999876533221 122456778899999987751 1122 22223333222 111111
Q ss_pred e--ecee--cCC--chhhHHHHHHHHHcCCcEEEEeecCCCCCCCC--CCC----HHHHHHHHHHHHhcCCCEEEecCCh
Q 015110 167 F--WGGL--VPE--NAYNASALEALLNAGVLGLKSFMCPSGINDFP--MTN----ASHIKEGLSVLARYKRPLLVHAEME 234 (413)
Q Consensus 167 ~--~~~~--~~~--~~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~--~~~----~~~l~~~~~~A~~~g~~v~~H~e~~ 234 (413)
. +... .+. .....+.+..+++.+...=-+-.+..|.+... +.+ ...+++-+++|.+..+|+.+|+++.
T Consensus 79 ~HP~~~~~~~~~~~~~~~~~~L~~~~~~~~~~k~vAiGEcGLD~~r~~~~~~~~Qk~vFekQl~LA~~~~~Pl~iH~r~a 158 (296)
T KOG3020|consen 79 VHPHFSQEFSDQSRKEKFLDTLLSIIENGFLPKVVAIGECGLDYDRLQFSDKEEQKTVFEKQLDLAKRLKLPLFIHCRSA 158 (296)
T ss_pred cCCCcccchhhccchhhHHHHHHHHHhhcccCCeEEeeccccccchhccCChHHHHHHHHHHHHHHHHccCCeeeechhh
Confidence 1 1110 110 01235666666665311100011111211111 222 3357788999999999999999763
No 291
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=32.63 E-value=3.3e+02 Score=25.20 Aligned_cols=126 Identities=16% Similarity=0.045 Sum_probs=67.0
Q ss_pred hhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCcccccc
Q 015110 176 AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 255 (413)
Q Consensus 176 ~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~ 255 (413)
....+.++.+.+.|++-+.+.+-++ .|..+-..++++.+.|-+.|..+.-=.+ .+. .+.+. ..-+.-.+.
T Consensus 29 ~~~~~~~~~l~~~Gad~iElGiPfS----DP~aDGpvIq~a~~rAL~~g~~~~~~~~---~~~-~~r~~--~~~p~vlm~ 98 (263)
T CHL00200 29 VITKKALKILDKKGADIIELGIPYS----DPLADGPIIQEASNRALKQGINLNKILS---ILS-EVNGE--IKAPIVIFT 98 (263)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCC----CCCccCHHHHHHHHHHHHcCCCHHHHHH---HHH-HHhcC--CCCCEEEEe
Confidence 3445667788889999888765443 2455666777776666555443210000 011 01100 001111222
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEcccc
Q 015110 256 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPH 322 (413)
Q Consensus 256 ~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~ 322 (413)
|.+ |-+ ..++++.++.+.+. |+.-.+.|--..++.-++++.+|+.|+....-++|.
T Consensus 99 Y~N--~i~--~~G~e~F~~~~~~a-------GvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~Pt 154 (263)
T CHL00200 99 YYN--PVL--HYGINKFIKKISQA-------GVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPT 154 (263)
T ss_pred ccc--HHH--HhCHHHHHHHHHHc-------CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 221 111 23566677766654 555455553332377788888999999877666664
No 292
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=32.21 E-value=4.1e+02 Score=24.51 Aligned_cols=106 Identities=11% Similarity=0.033 Sum_probs=53.9
Q ss_pred cchHHHHHHHHhCCceEEEeCCCCCCCC-----------CCcHHHHHHHHHHHhcCCeeeEEeeceecCCc---hhhHHH
Q 015110 116 EGFPSGTKAAAAGGITTLIDMPLNSDPS-----------TISTETLKLKVDAAEKRIYVDVGFWGGLVPEN---AYNASA 181 (413)
Q Consensus 116 e~~~~~~~~al~~GvTTv~d~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 181 (413)
..+......+...||+.++-...+.... ..+.+.++...........+.+..+....+.. ....+.
T Consensus 73 ~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~hp~~~~~~~~~~~ 152 (274)
T cd00537 73 IELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEGHPEAPSLEEDIKR 152 (274)
T ss_pred HHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCCCcCCCCCCHHHHHHH
Confidence 3455666777888999998774211111 11233333322211011112222221111111 123344
Q ss_pred HHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015110 182 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 230 (413)
Q Consensus 182 l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H 230 (413)
+++-++.|+..+-. .+.++.+.+.+.++.+++.|+.+-++
T Consensus 153 L~~Ki~aGA~f~iT---------Q~~fd~~~~~~~~~~~~~~gi~vPIi 192 (274)
T cd00537 153 LKRKVDAGADFIIT---------QLFFDNDAFLRFVDRCRAAGITVPII 192 (274)
T ss_pred HHHHHHCCCCEEee---------cccccHHHHHHHHHHHHHcCCCCCEE
Confidence 55555679876643 24568889999999999988544444
No 293
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=32.09 E-value=2.8e+02 Score=27.08 Aligned_cols=106 Identities=10% Similarity=0.075 Sum_probs=61.5
Q ss_pred CccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEE
Q 015110 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGL 193 (413)
Q Consensus 114 ~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~i 193 (413)
+.+.+...++.+...|++.+.-.. +..|.....+.+...++...... ..+.... .....+.++.+.++|+..+
T Consensus 105 s~eEI~~~a~~~~~~Gv~~i~lvg-Ge~p~~~~~e~l~~~i~~Ik~~~-p~i~i~~-----g~lt~e~l~~Lk~aGv~r~ 177 (371)
T PRK09240 105 DEEEIEREMAAIKKLGFEHILLLT-GEHEAKVGVDYIRRALPIAREYF-SSVSIEV-----QPLSEEEYAELVELGLDGV 177 (371)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEee-CCCCCCCCHHHHHHHHHHHHHhC-CCceecc-----CCCCHHHHHHHHHcCCCEE
Confidence 345566677778889999996554 22333334555555555544221 1111111 1123567888999999988
Q ss_pred EEeecCCCCCC-------CCCCCHHHHHHHHHHHHhcCCC
Q 015110 194 KSFMCPSGIND-------FPMTNASHIKEGLSVLARYKRP 226 (413)
Q Consensus 194 k~~~~~~~~~~-------~~~~~~~~l~~~~~~A~~~g~~ 226 (413)
.++........ -+..+.+...+.++.|++.|+.
T Consensus 178 ~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~ 217 (371)
T PRK09240 178 TVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIR 217 (371)
T ss_pred EEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 76643211000 0123667788889999999885
No 294
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=32.00 E-value=1.4e+02 Score=28.05 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cC-CCEEEecCChh
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YK-RPLLVHAEMEK 235 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~-~g-~~v~~H~e~~~ 235 (413)
.+..+++.+.|++.|.+- . .....++..+.++++..++ .+ +++.+|++|..
T Consensus 158 ~~~~~~~~~~G~d~i~l~--D----T~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~ 210 (287)
T PRK05692 158 ADVAERLFALGCYEISLG--D----TIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTY 210 (287)
T ss_pred HHHHHHHHHcCCcEEEec--c----ccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 455666677898876542 1 2245788888888888775 44 78999998764
No 295
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=31.62 E-value=1.3e+02 Score=28.92 Aligned_cols=53 Identities=15% Similarity=0.158 Sum_probs=37.0
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCC------CCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015110 178 NASALEALLNAGVLGLKSFMCPSGI------NDFPMTNASHIKEGLSVLARYKRPLLVH 230 (413)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~------~~~~~~~~~~l~~~~~~A~~~g~~v~~H 230 (413)
..+..+++++.|++++|+.+.+... .+.++.....+.++.+.++++++++...
T Consensus 160 T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaD 218 (343)
T TIGR01305 160 TGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISD 218 (343)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEc
Confidence 4567788899999999998765322 1223335566777888888788887775
No 296
>PLN02591 tryptophan synthase
Probab=31.40 E-value=4.2e+02 Score=24.35 Aligned_cols=41 Identities=20% Similarity=0.168 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015110 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 230 (413)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H 230 (413)
+-++++.+.|++++-+ |....++.....+.++++|+....=
T Consensus 97 ~F~~~~~~aGv~Gvii----------pDLP~ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 97 KFMATIKEAGVHGLVV----------PDLPLEETEALRAEAAKNGIELVLL 137 (250)
T ss_pred HHHHHHHHcCCCEEEe----------CCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 4566777899999855 2356688999999999999865544
No 297
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=31.26 E-value=3.7e+02 Score=23.69 Aligned_cols=95 Identities=23% Similarity=0.249 Sum_probs=54.0
Q ss_pred ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEE
Q 015110 115 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 194 (413)
Q Consensus 115 ~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik 194 (413)
.++.....++.+.+|++.+- ..+++ | ...+.++...+.. .... ++. +-+ ...+.+++.++.|+..+-
T Consensus 19 ~~~a~~~~~al~~gGi~~iE-iT~~t-~--~a~~~I~~l~~~~-p~~~--vGA--GTV----~~~e~a~~a~~aGA~Fiv 85 (196)
T PF01081_consen 19 PEDAVPIAEALIEGGIRAIE-ITLRT-P--NALEAIEALRKEF-PDLL--VGA--GTV----LTAEQAEAAIAAGAQFIV 85 (196)
T ss_dssp GGGHHHHHHHHHHTT--EEE-EETTS-T--THHHHHHHHHHHH-TTSE--EEE--ES------SHHHHHHHHHHT-SEEE
T ss_pred HHHHHHHHHHHHHCCCCEEE-EecCC-c--cHHHHHHHHHHHC-CCCe--eEE--Eec----cCHHHHHHHHHcCCCEEE
Confidence 45666778889999999764 33232 2 3345555544443 2222 221 111 125678888899997663
Q ss_pred EeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhh
Q 015110 195 SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG 236 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~ 236 (413)
. |.+++ ++++.++++|+++.-=+-++.+
T Consensus 86 S----------P~~~~----~v~~~~~~~~i~~iPG~~TptE 113 (196)
T PF01081_consen 86 S----------PGFDP----EVIEYAREYGIPYIPGVMTPTE 113 (196)
T ss_dssp E----------SS--H----HHHHHHHHHTSEEEEEESSHHH
T ss_pred C----------CCCCH----HHHHHHHHcCCcccCCcCCHHH
Confidence 2 34454 4667888999999888877654
No 298
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=31.19 E-value=2.8e+02 Score=26.98 Aligned_cols=108 Identities=10% Similarity=0.085 Sum_probs=63.4
Q ss_pred CccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-eeeEEeeceecCCchhhHHHHHHHHHcCCcE
Q 015110 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVPENAYNASALEALLNAGVLG 192 (413)
Q Consensus 114 ~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ 192 (413)
+.+.+...++.+...|++.++-.. +..|.....+.+...++...... .+.+. +. .-..+.++++.+.|+..
T Consensus 104 s~eEI~~~a~~~~~~Gv~~i~lvg-Ge~p~~~~~e~l~eii~~Ik~~~p~i~Ie----i~---~lt~e~~~~Lk~aGv~r 175 (366)
T TIGR02351 104 NEEEIEREIEAIKKSGFKEILLVT-GESEKAAGVEYIAEAIKLAREYFSSLAIE----VQ---PLNEEEYKKLVEAGLDG 175 (366)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEee-CCCCCCCCHHHHHHHHHHHHHhCCccccc----cc---cCCHHHHHHHHHcCCCE
Confidence 345666777888889999998664 33444444565666555554221 11111 11 12356788899999998
Q ss_pred EEEeecCCCCCC-------CCCCCHHHHHHHHHHHHhcCCC-EEE
Q 015110 193 LKSFMCPSGIND-------FPMTNASHIKEGLSVLARYKRP-LLV 229 (413)
Q Consensus 193 ik~~~~~~~~~~-------~~~~~~~~l~~~~~~A~~~g~~-v~~ 229 (413)
+.++........ .+.-+.+...+.++.|++.|+. +.+
T Consensus 176 ~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~ 220 (366)
T TIGR02351 176 VTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGI 220 (366)
T ss_pred EEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeece
Confidence 876542210000 0122566777788889888876 444
No 299
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=31.09 E-value=5.3e+02 Score=25.49 Aligned_cols=157 Identities=18% Similarity=0.189 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCCCCCCce
Q 015110 210 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 289 (413)
Q Consensus 210 ~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~~~~g~~ 289 (413)
...|++++..|.+.|+.+.+|..++...- .+++..- ...+.+++++..... |..|
T Consensus 213 ~yFL~~ViPvAEe~GV~LAiHPDDPP~~i----------------~GlpRIv--st~ed~~rll~~V~S-----panG-- 267 (394)
T TIGR00695 213 AFFLQEILPVAEEYGVQMAIHPDDPPRPI----------------LGLPRIV--STIEDMQWLVATSDS-----PANG-- 267 (394)
T ss_pred HHHHHHHHHHHHHcCCEEEECCCCCCccc----------------cCCCccc--CCHHHHHHHHHhcCC-----cccc--
Confidence 34688999999999999999998875310 1111111 123467777765532 2233
Q ss_pred EEEEccCCh----hhHHHHHHHHHHCCCCEEEEcccccccccc-ccCCCCCcceEEcCCCCChhcHHHHHHHHh------
Q 015110 290 LHIVHLSDA----SSSLDLLMEAKTNGDSITVETCPHYLAFSA-EEIPDGDTRFKCAPPIRDAANKEKLWEALM------ 358 (413)
Q Consensus 290 vhi~H~s~~----~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~-~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~------ 358 (413)
+.+|-.|-. ..-.++++.. |-.|. |..|-. ........+.- ...|-+.-+..++++++.
T Consensus 268 lt~CtGSlg~~~~ndl~~~i~~f---g~RI~------fvH~Rnv~~~g~~~~F~E-a~Hl~Gd~DM~~v~kall~~~~~~ 337 (394)
T TIGR00695 268 FTMCTGSYGVRPDNDLVEMAKQF---AGRIY------FSHLRSTKREENPLTFHE-AAHLTGDVDMNNVVKAVMEEEHRR 337 (394)
T ss_pred EEEEecccccCCCCCHHHHHHHH---cccee------EEEEecccccCCCCCcee-cccCCCCccHHHHHHHHHHHhhhh
Confidence 445554422 0223445544 22333 222211 00000001111 123334455555555554
Q ss_pred --cCCcc--EEcCCCCCCChhhhccCCCCccccCCCcchHhHHHHHHhhhcccc
Q 015110 359 --DGHID--MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQIFCSLFFLSRGLM 408 (413)
Q Consensus 359 --~G~i~--~i~sDh~p~~~~~k~~~~~~~~~~~~G~~~~e~~l~~~~~~~gv~ 408 (413)
+|..+ .+=-||.|.-..+-. ....+|.+-+.-++.+.+. .|+.
T Consensus 338 ~~~G~~~~ip~RPDHg~~m~~d~~------~~~~PGY~~~gR~~gl~yl-rGl~ 384 (394)
T TIGR00695 338 DYEGETRLIPMRPDHGHQLLDDLR------KKTNPGYSAIGRLKGLAEL-RGLE 384 (394)
T ss_pred ccCCCcCCCCcCCCCCCCcCCccC------CCCCCCchHHHHHHHHHHH-HHHH
Confidence 56444 378899886433210 1145677777777777764 3544
No 300
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=31.09 E-value=2.8e+02 Score=27.07 Aligned_cols=108 Identities=15% Similarity=0.096 Sum_probs=52.7
Q ss_pred cchHHHHHHHHhCCceEEEeCCCCCCCCC-CcHHHHH---HHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCc
Q 015110 116 EGFPSGTKAAAAGGITTLIDMPLNSDPST-ISTETLK---LKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVL 191 (413)
Q Consensus 116 e~~~~~~~~al~~GvTTv~d~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~ 191 (413)
+.+...+...+.+|+.-+.|......+.. ...+.++ ..++.+.....-...+...++....+.++..+...+.|++
T Consensus 146 ~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~~~e~i~~a~~a~~~Gad 225 (367)
T cd08205 146 EELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGDPDELRRRADRAVEAGAN 225 (367)
T ss_pred HHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHHHcCCC
Confidence 45566778889999999977652222222 2223332 2233333110000111112233334455666666778998
Q ss_pred EEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCCh
Q 015110 192 GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME 234 (413)
Q Consensus 192 ~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~ 234 (413)
++-+.... +.....+.+ .+ ..+++++.|....
T Consensus 226 ~vmv~~~~-----~g~~~~~~l---~~---~~~lpi~~H~a~~ 257 (367)
T cd08205 226 ALLINPNL-----VGLDALRAL---AE---DPDLPIMAHPAFA 257 (367)
T ss_pred EEEEeccc-----ccccHHHHH---Hh---cCCCeEEEccCcc
Confidence 87543211 111222233 22 3489999996543
No 301
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=31.03 E-value=4.3e+02 Score=24.44 Aligned_cols=51 Identities=24% Similarity=0.149 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cC-CCEEEecCChh
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YK-RPLLVHAEMEK 235 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~-~g-~~v~~H~e~~~ 235 (413)
.+.++++.+.|+..+.+- +.....+++.+..+++..++ .+ +++.+|++|.-
T Consensus 154 ~~~~~~~~~~g~~~i~l~------DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~ 206 (273)
T cd07941 154 LATLKAAAEAGADWLVLC------DTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDS 206 (273)
T ss_pred HHHHHHHHhCCCCEEEEe------cCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCC
Confidence 355566677898876432 12345788889988888775 45 88999998754
No 302
>PRK05926 hypothetical protein; Provisional
Probab=30.99 E-value=2.9e+02 Score=27.00 Aligned_cols=107 Identities=12% Similarity=0.024 Sum_probs=0.0
Q ss_pred CccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-CeeeEEeecee------cCCchhhHHHHHHHH
Q 015110 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGGL------VPENAYNASALEALL 186 (413)
Q Consensus 114 ~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~l~~l~ 186 (413)
+.|.+...++.+ ..|+|.+.-.. +..|. ...+.+.+..+..... +.+.+....+. ........+.++++.
T Consensus 100 s~eeI~~~a~~a-~~G~~ei~iv~-G~~p~-~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~Lk 176 (370)
T PRK05926 100 TPDQLVQSIKEN-PSPITETHIVA-GCFPS-CNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLK 176 (370)
T ss_pred CHHHHHHHHHHH-hcCCCEEEEEe-CcCCC-CCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHH
Q ss_pred HcCCcEEEEe------------ecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEE
Q 015110 187 NAGVLGLKSF------------MCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 229 (413)
Q Consensus 187 ~~G~~~ik~~------------~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~ 229 (413)
++|...+... +++. .++.++..++++.|++.|+++..
T Consensus 177 eAGl~~~~g~GaEi~~e~~r~~~~p~------~~t~~e~l~~i~~a~~~Gi~~~s 225 (370)
T PRK05926 177 IAGLDSIPGGGAEILVDEIRETLAPG------RLSSQGFLEIHKTAHSLGIPSNA 225 (370)
T ss_pred HcCcCccCCCCchhcCHHHHHhhCCC------CCCHHHHHHHHHHHHHcCCcccC
No 303
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=30.85 E-value=4.5e+02 Score=24.62 Aligned_cols=67 Identities=10% Similarity=0.048 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHH---HHHHHH-hcCCCEEEecCChhhchhhHhh
Q 015110 177 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE---GLSVLA-RYKRPLLVHAEMEKGSERHVKL 243 (413)
Q Consensus 177 ~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~---~~~~A~-~~g~~v~~H~e~~~~~~~~~~~ 243 (413)
...+...++++.|++-+-+....+..+..+....+++++ +++..+ +.++++.+-..+.+.++..+..
T Consensus 39 ~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~~~~va~~AL~~ 109 (282)
T PRK11613 39 DAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVWISVDTSKPEVIRESAKA 109 (282)
T ss_pred HHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHc
Confidence 345677778889998887653222111122334557555 456555 3588999999888887777654
No 304
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=30.77 E-value=3e+02 Score=26.31 Aligned_cols=51 Identities=12% Similarity=0.023 Sum_probs=28.7
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015110 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (413)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~ 233 (413)
..+.++++.+.|+..+.+. + + ..+..+.+.+.++++..++.+..+.+|+-+
T Consensus 77 i~~~~~~~~~~G~~~i~l~-g--G--~~p~~~~~~~~~li~~Ik~~~~~i~~~~~s 127 (340)
T TIGR03699 77 ILQKIEELVAYGGTQILLQ-G--G--VNPDLGLDYYEDLFRAIKARFPHIHIHSFS 127 (340)
T ss_pred HHHHHHHHHHcCCcEEEEe-c--C--CCCCCCHHHHHHHHHHHHHHCCCcCCCCCC
Confidence 3445555556676655432 1 1 123456666777788777766556666543
No 305
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=30.73 E-value=1.2e+02 Score=30.56 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHhcCC-CEEEecCChh
Q 015110 207 MTNASHIKEGLSVLARYKR-PLLVHAEMEK 235 (413)
Q Consensus 207 ~~~~~~l~~~~~~A~~~g~-~v~~H~e~~~ 235 (413)
+++.+.++++++....+++ .++.|..|..
T Consensus 18 f~~~~~ik~~Id~ma~~K~N~lHlHLtDdq 47 (445)
T cd06569 18 FHSKETVLKLLDQMAAYKLNKLHLHLTDDE 47 (445)
T ss_pred CCCHHHHHHHHHHHHHhCCceEEEEeecCC
Confidence 4689999999999999888 4799986654
No 306
>PRK05927 hypothetical protein; Provisional
Probab=30.66 E-value=4.5e+02 Score=25.48 Aligned_cols=55 Identities=16% Similarity=0.125 Sum_probs=31.1
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhc
Q 015110 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGS 237 (413)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~ 237 (413)
..+.+++..+.|+..+-+ . +|. .|..+.+.+.++++..++.---+.+|+-+..++
T Consensus 81 i~~~a~~~~~~G~~~i~i-~--gG~--~p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei 135 (350)
T PRK05927 81 FRSLMQRYVSAGVKTVLL-Q--GGV--HPQLGIDYLEELVRITVKEFPSLHPHFFSAVEI 135 (350)
T ss_pred HHHHHHHHHHCCCCEEEE-e--CCC--CCCCCHHHHHHHHHHHHHHCCCCcccCCCHHHH
Confidence 445555566677766543 2 221 244567777788877775422366666555443
No 307
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=30.54 E-value=1.6e+02 Score=24.00 Aligned_cols=26 Identities=8% Similarity=-0.061 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEec
Q 015110 206 PMTNASHIKEGLSVLARYKRPLLVHA 231 (413)
Q Consensus 206 ~~~~~~~l~~~~~~A~~~g~~v~~H~ 231 (413)
|.+..+.|.+++++|++.|+.|.+..
T Consensus 39 p~L~~Dllge~v~a~h~~Girv~ay~ 64 (132)
T PF14871_consen 39 PGLKRDLLGEQVEACHERGIRVPAYF 64 (132)
T ss_pred CCCCcCHHHHHHHHHHHCCCEEEEEE
Confidence 45677899999999999999998874
No 308
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=30.52 E-value=1.4e+02 Score=26.54 Aligned_cols=104 Identities=19% Similarity=0.127 Sum_probs=51.6
Q ss_pred HHHHHHHhCCceEEEeCCC-CCCCCCCcHHHHHHHHHHHhcCCeeeEE--eece-ecCCc---hhhHHHHHHHHHcCCcE
Q 015110 120 SGTKAAAAGGITTLIDMPL-NSDPSTISTETLKLKVDAAEKRIYVDVG--FWGG-LVPEN---AYNASALEALLNAGVLG 192 (413)
Q Consensus 120 ~~~~~al~~GvTTv~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~---~~~~~~l~~l~~~G~~~ 192 (413)
..+..|.++|...+--... .......+...++...+.. ...+.+. +..+ +.-.. ....++++.+.+.|+++
T Consensus 11 ~~a~~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG 88 (201)
T PF03932_consen 11 EDALAAEAGGADRIELCSNLEVGGLTPSLGLIRQAREAV--DIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADG 88 (201)
T ss_dssp HHHHHHHHTT-SEEEEEBTGGGT-B---HHHHHHHHHHT--TSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SE
T ss_pred HHHHHHHHcCCCEEEECCCccCCCcCcCHHHHHHHHhhc--CCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCe
Confidence 4567778899888754320 0011112344555444322 1112211 1111 11111 12456677778899999
Q ss_pred EEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec
Q 015110 193 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231 (413)
Q Consensus 193 ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 231 (413)
|.+..-.. ....+.+.++++++.|+ ++++.+|-
T Consensus 89 ~VfG~L~~----dg~iD~~~~~~Li~~a~--~~~~tFHR 121 (201)
T PF03932_consen 89 FVFGALTE----DGEIDEEALEELIEAAG--GMPVTFHR 121 (201)
T ss_dssp EEE--BET----TSSB-HHHHHHHHHHHT--TSEEEE-G
T ss_pred eEEEeECC----CCCcCHHHHHHHHHhcC--CCeEEEeC
Confidence 87643211 13578899999999886 89999994
No 309
>PRK08508 biotin synthase; Provisional
Probab=30.42 E-value=4.5e+02 Score=24.43 Aligned_cols=113 Identities=12% Similarity=0.027 Sum_probs=58.3
Q ss_pred CccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEE
Q 015110 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGL 193 (413)
Q Consensus 114 ~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~i 193 (413)
+.|.+...++.+.+.|++.+.-............+.+.+..+...... .++..+... .....+.++++.++|++.+
T Consensus 41 s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~-p~l~i~~s~---G~~~~e~l~~Lk~aGld~~ 116 (279)
T PRK08508 41 DIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEV-PGLHLIACN---GTASVEQLKELKKAGIFSY 116 (279)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhC-CCcEEEecC---CCCCHHHHHHHHHcCCCEE
Confidence 446666677777788998886421011111123344444444444321 122221111 1113567888889998776
Q ss_pred EEeecCCC-C--CCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015110 194 KSFMCPSG-I--NDFPMTNASHIKEGLSVLARYKRPLLVH 230 (413)
Q Consensus 194 k~~~~~~~-~--~~~~~~~~~~l~~~~~~A~~~g~~v~~H 230 (413)
........ . .-.+..+.+...+.++.|++.|+.+..+
T Consensus 117 ~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg 156 (279)
T PRK08508 117 NHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSG 156 (279)
T ss_pred cccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecce
Confidence 54211110 0 0011235567777888899999876554
No 310
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=30.21 E-value=1.3e+02 Score=27.70 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHH-cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec
Q 015110 176 AYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231 (413)
Q Consensus 176 ~~~~~~l~~l~~-~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 231 (413)
.+.++.-.++++ .|+..+|+- ..+++.+.++...+.|+||+.|.
T Consensus 93 ~~a~~nA~r~~ke~gA~aVKlE------------GG~~~~~~i~~L~~~gIPV~gHi 137 (268)
T COG0413 93 EQALKNAARLMKEAGADAVKLE------------GGEEMAETIKRLTERGIPVMGHI 137 (268)
T ss_pred HHHHHHHHHHHHHhCCCEEEEc------------CCHHHHHHHHHHHHcCCceEEEe
Confidence 344455555555 889999972 11567778888888999999997
No 311
>PTZ00300 pyruvate kinase; Provisional
Probab=30.13 E-value=5.9e+02 Score=25.73 Aligned_cols=100 Identities=12% Similarity=0.133 Sum_probs=54.6
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecCC
Q 015110 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPS 200 (413)
Q Consensus 121 ~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~ 200 (413)
....++..|+..+.- + -..+.+.+...++...... -+.....-+ +..+.++.+++.+ .+++++-+ +..
T Consensus 152 dI~~ald~gvd~I~~-S-----fVrsaeDv~~vr~~l~~~~-~~~~IiaKI--Et~eav~nldeI~-~~~DgImV--aRG 219 (454)
T PTZ00300 152 DLQFGVEQGVDMIFA-S-----FIRSAEQVGEVRKALGAKG-GDIMIICKI--ENHQGVQNIDSII-EESDGIMV--ARG 219 (454)
T ss_pred HHHHHHHCCCCEEEE-C-----CCCCHHHHHHHHHHHHhcC-CCceEEEEE--CCHHHHHhHHHHH-HhCCEEEE--ecc
Confidence 456678899988763 2 2345566665555543211 111111111 2345567777777 67777643 222
Q ss_pred CCC-CCCCC-CHHHHHHHHHHHHhcCCCEEEecC
Q 015110 201 GIN-DFPMT-NASHIKEGLSVLARYKRPLLVHAE 232 (413)
Q Consensus 201 ~~~-~~~~~-~~~~l~~~~~~A~~~g~~v~~H~e 232 (413)
..+ ..+.. =+...+++++.|+++|+|+.+=.+
T Consensus 220 DLgvei~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQ 253 (454)
T PTZ00300 220 DLGVEIPAEKVVVAQKILISKCNVAGKPVICATQ 253 (454)
T ss_pred hhhhhcChHHHHHHHHHHHHHHHHcCCCEEEECc
Confidence 110 01111 134677889999999999887544
No 312
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=29.66 E-value=4.7e+02 Score=24.39 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=51.3
Q ss_pred cchHHHHHHHHhCCceEEEeCCCCCCCCC------------CcHHHHHHHHHHHhcCCeeeEEeeceecCCch---hhHH
Q 015110 116 EGFPSGTKAAAAGGITTLIDMPLNSDPST------------ISTETLKLKVDAAEKRIYVDVGFWGGLVPENA---YNAS 180 (413)
Q Consensus 116 e~~~~~~~~al~~GvTTv~d~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 180 (413)
+.+......+...||+.++....+ .|.. ...+.++...+.......+.+..+....+... ...+
T Consensus 85 ~~l~~~L~~~~~~Gi~niL~l~GD-~~~~g~~~~~~~~~~~~~~~Li~~i~~~~~~~~~i~va~~P~~hp~~~~~~~~~~ 163 (287)
T PF02219_consen 85 EALQSDLLGAHALGIRNILALTGD-PPKGGDHFAKPVFDFDYALDLIRLIRQEYGDDFSIGVAGYPEGHPEAPDFEAELK 163 (287)
T ss_dssp HHHHHHHHHHHHTT--EEEEESS--TSTTSSS----TTS-SSHHHHHHHHHHHHGGGSEEEEEE-TTHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeEEEecCC-CCCCCccccCCCchhHHHHHHHHHHHHhcCcccccccccCCCCCccccCHHHHHH
Confidence 445566677789999999887522 1111 01233333222222212233332221122211 2244
Q ss_pred HHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 015110 181 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKR 225 (413)
Q Consensus 181 ~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~ 225 (413)
.+++-+++|+..+-. .+.++.+.+.+.++.+++.|+
T Consensus 164 ~l~~Ki~aGA~f~iT---------Q~~fd~~~~~~~~~~~~~~g~ 199 (287)
T PF02219_consen 164 RLKKKIDAGADFIIT---------QPFFDAEAFERFLDRLREAGI 199 (287)
T ss_dssp HHHHHHHTTESEEEE---------EE-SSHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHCCCCEEec---------cccCCHHHHHHHHHHHHHcCC
Confidence 555556789877643 235688999999999999886
No 313
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=29.60 E-value=4.8e+02 Score=24.56 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=21.5
Q ss_pred HHHHHHHhhcccCCCCCCceEEEEccCChhhHHHHHHHHHHCC
Q 015110 270 RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNG 312 (413)
Q Consensus 270 ~~~~~~a~~~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G 312 (413)
.++++.+++.|+. ...-+.+.|.-+.++.++.+...|+-+
T Consensus 148 l~~i~~a~~~Gi~---~~s~~iiG~~Et~ed~~~~l~~lr~l~ 187 (309)
T TIGR00423 148 LEVIKTAHRLGIP---TTATMMFGHVENPEHRVEHLLRIRKIQ 187 (309)
T ss_pred HHHHHHHHHcCCC---ceeeEEecCCCCHHHHHHHHHHHHhhc
Confidence 3556666655332 133445666655545566666666543
No 314
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=29.32 E-value=4.6e+02 Score=25.18 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHhcCCC--EEEecCC
Q 015110 207 MTNASHIKEGLSVLARYKRP--LLVHAEM 233 (413)
Q Consensus 207 ~~~~~~l~~~~~~A~~~g~~--v~~H~e~ 233 (413)
..+.++++.+++.+++.|.+ +..||-+
T Consensus 156 ma~~~ei~~av~~~r~~g~~~i~LLhC~s 184 (347)
T COG2089 156 MATIEEIEEAVAILRENGNPDIALLHCTS 184 (347)
T ss_pred cccHHHHHHHHHHHHhcCCCCeEEEEecC
Confidence 45778888888888888887 7888854
No 315
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=29.30 E-value=9.5e+02 Score=27.84 Aligned_cols=60 Identities=12% Similarity=0.116 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh----cCCCEEEecCChhhchhhHhh
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR----YKRPLLVHAEMEKGSERHVKL 243 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~----~g~~v~~H~e~~~~~~~~~~~ 243 (413)
.+..+++++.|+.-+-+.+... .....+++.+++...+. .++|+++-..+.+.++.++..
T Consensus 387 l~~A~~qve~GA~iIDVn~g~~-----~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~ 450 (1229)
T PRK09490 387 LDVARQQVENGAQIIDINMDEG-----MLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKC 450 (1229)
T ss_pred HHHHHHHHHCCCCEEEECCCCC-----CCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhh
Confidence 4455666789998887754321 23456788888888875 489999999998888777765
No 316
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=29.23 E-value=1e+02 Score=28.43 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 231 (413)
...+++.++.|++++........ ....-..+.+.++++.|+++|+|+.+++
T Consensus 100 ~~~ve~ai~lgadAV~~~Vy~Gs--e~e~~~i~~~~~v~~~a~~~Gmp~v~~~ 150 (265)
T COG1830 100 VATVEDAIRLGADAVGATVYVGS--ETEREMIENISQVVEDAHELGMPLVAWA 150 (265)
T ss_pred eeeHHHHHhCCCcEEEEEEecCC--cchHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 35677888889887665443321 0111234567778899999999999986
No 317
>PRK09248 putative hydrolase; Validated
Probab=28.83 E-value=72 Score=29.03 Aligned_cols=36 Identities=17% Similarity=0.288 Sum_probs=27.1
Q ss_pred eeecccccCCCCCCCccchHHHHHHHHhCCceEEEeC
Q 015110 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDM 136 (413)
Q Consensus 100 lID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~ 136 (413)
++|.|+|...... ....+....+.|.+.|++++.--
T Consensus 4 ~~D~H~HT~~s~~-~~~~~~e~v~~A~~~G~~~i~iT 39 (246)
T PRK09248 4 PVDTHTHTIASGH-AYSTLHENAAEAKQKGLKLFAIT 39 (246)
T ss_pred ceEeCcCCCCCCC-CCCCHHHHHHHHHHCCCCEEEEC
Confidence 6899999877521 23356777899999999998754
No 318
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=28.82 E-value=82 Score=30.44 Aligned_cols=48 Identities=8% Similarity=0.090 Sum_probs=34.3
Q ss_pred HHHHHHcCCcEEEEeecCCCCCCCC---CCCHHHHHHHHHHHHhcCCCEEEe
Q 015110 182 LEALLNAGVLGLKSFMCPSGINDFP---MTNASHIKEGLSVLARYKRPLLVH 230 (413)
Q Consensus 182 l~~l~~~G~~~ik~~~~~~~~~~~~---~~~~~~l~~~~~~A~~~g~~v~~H 230 (413)
++++++.|++++|+.+.+.. +..+ ....+.+.++.+.++++|+|+.+.
T Consensus 112 ve~a~~~GAdAVk~lv~~~~-d~~~~~~~~~~~~l~rv~~ec~~~giPlllE 162 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYRP-DEDDAINDRKHAFVERVGAECRANDIPFFLE 162 (340)
T ss_pred HHHHHHcCCCEEEEEEEeCC-CcchHHHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 67788899999998765532 1111 123346889999999999998885
No 319
>PRK07360 FO synthase subunit 2; Reviewed
Probab=28.34 E-value=5.3e+02 Score=25.16 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=28.5
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCCCCCCCCC-HHHHHHHHHHHHhcCCCEEEec
Q 015110 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTN-ASHIKEGLSVLARYKRPLLVHA 231 (413)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~-~~~l~~~~~~A~~~g~~v~~H~ 231 (413)
..+.++++.+.|+..+.+. + | ..|... .+.+.++++..++.-..+.+|+
T Consensus 96 I~~~a~~a~~~G~~~i~l~-~--G--~~p~~~~~e~~~~~i~~ik~~~~~i~i~a 145 (371)
T PRK07360 96 ILEKAAEAVKRGATEVCIQ-G--G--LHPAADSLEFYLEILEAIKEEFPDIHLHA 145 (371)
T ss_pred HHHHHHHHHhCCCCEEEEc-c--C--CCCCCCcHHHHHHHHHHHHHhCCCcceee
Confidence 3445555666788776554 2 1 123343 6677788888876433466665
No 320
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=28.08 E-value=4.5e+02 Score=23.74 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cC-CCEEEecCChh
Q 015110 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YK-RPLLVHAEMEK 235 (413)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~-~g-~~v~~H~e~~~ 235 (413)
+.++.+.+.|+..+.+. . .....+++.+.++++..++ .+ +++.+|++|..
T Consensus 150 ~~~~~~~~~g~~~i~l~--D----t~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~ 201 (265)
T cd03174 150 EVAKALEEAGADEISLK--D----TVGLATPEEVAELVKALREALPDVPLGLHTHNTL 201 (265)
T ss_pred HHHHHHHHcCCCEEEec--h----hcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 44555667888876542 1 1235788888888888775 34 78999998754
No 321
>PRK06247 pyruvate kinase; Provisional
Probab=28.03 E-value=6.6e+02 Score=25.59 Aligned_cols=94 Identities=14% Similarity=0.095 Sum_probs=51.6
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecCCC
Q 015110 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG 201 (413)
Q Consensus 122 ~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~~~ 201 (413)
..-++..|+..+.-.. ..+.+.+...++...... ....-+ ++.+.++.++++++. ++++- .+...
T Consensus 179 i~f~~~~~vD~ia~SF------Vr~a~Di~~~r~~l~~~~----~iiaKI--Et~eav~nldeI~~~-~DgIm--VaRGD 243 (476)
T PRK06247 179 LEFALELGVDWVALSF------VQRPEDVEEVRKIIGGRV----PVMAKI--EKPQAIDRLEAIVEA-SDAIM--VARGD 243 (476)
T ss_pred HHHHHHcCCCEEEECC------CCCHHHHHHHHHHhhhcC----eEEEEE--CCHHHHHhHHHHHHH-cCEEE--Eccch
Confidence 4567888988776332 234566666555443211 111111 234456677777665 55553 23321
Q ss_pred CCCCCCCC----HHHHHHHHHHHHhcCCCEEEecC
Q 015110 202 INDFPMTN----ASHIKEGLSVLARYKRPLLVHAE 232 (413)
Q Consensus 202 ~~~~~~~~----~~~l~~~~~~A~~~g~~v~~H~e 232 (413)
.+ -... +...+++++.|+++|+|+.+=.+
T Consensus 244 Lg--ve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQ 276 (476)
T PRK06247 244 LG--VEVPLEQVPLIQKRIIRAARRAGKPVVVATQ 276 (476)
T ss_pred hc--cccCHHHHHHHHHHHHHHHHHhCCCEEEECc
Confidence 11 0122 44677888999999999887443
No 322
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=27.72 E-value=3.7e+02 Score=25.18 Aligned_cols=51 Identities=10% Similarity=0.029 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh---cCCCEEEecC
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR---YKRPLLVHAE 232 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~---~g~~v~~H~e 232 (413)
.+.++.+++.|+.++-+. +.+ +.+..++.+|-.++++.+.+ -+.+|.+|+.
T Consensus 24 ~~lv~~~~~~Gv~gi~v~-Gst--GE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~ 77 (294)
T TIGR02313 24 RELIEFQIEGGSHAISVG-GTS--GEPGSLTLEERKQAIENAIDQIAGRIPFAPGTG 77 (294)
T ss_pred HHHHHHHHHcCCCEEEEC-ccC--cccccCCHHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 345555667788877432 111 34456777777777665543 2356777764
No 323
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=27.70 E-value=5.2e+02 Score=24.26 Aligned_cols=110 Identities=16% Similarity=0.239 Sum_probs=54.9
Q ss_pred HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-ee--eEEeeceecCC-----c---hhhHHHHHHHHH
Q 015110 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YV--DVGFWGGLVPE-----N---AYNASALEALLN 187 (413)
Q Consensus 119 ~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~-----~---~~~~~~l~~l~~ 187 (413)
....+.++..|+|++.--. ...|...+.+.-++..+.+.... .+ .++..++.... . -...++..+.++
T Consensus 85 ~e~i~~ai~~GFtSVM~Dg-S~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~ 163 (282)
T TIGR01858 85 LDDIRQKVHAGVRSAMIDG-SHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVE 163 (282)
T ss_pred HHHHHHHHHcCCCEEeecC-CCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHH
Confidence 3467899999999995332 22332223333333333333221 11 11211111111 0 012456666664
Q ss_pred -cCCcEEEEeecC-CCC-CCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015110 188 -AGVLGLKSFMCP-SGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (413)
Q Consensus 188 -~G~~~ik~~~~~-~~~-~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e 232 (413)
-|++.+-+..+. +|. ...|..+.+.|+++-+ +.++|+.+|--
T Consensus 164 ~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~---~~~iPLVlHGg 208 (282)
T TIGR01858 164 ATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIRE---VVDVPLVLHGA 208 (282)
T ss_pred HHCcCEEecccCccccCcCCCCccCHHHHHHHHH---HhCCCeEEecC
Confidence 588776554322 221 1124567777777654 45899999963
No 324
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=27.62 E-value=5.1e+02 Score=24.21 Aligned_cols=51 Identities=16% Similarity=0.155 Sum_probs=29.8
Q ss_pred hHHHHHHHHH-cCCcEEEEee--cCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec
Q 015110 178 NASALEALLN-AGVLGLKSFM--CPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231 (413)
Q Consensus 178 ~~~~l~~l~~-~G~~~ik~~~--~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 231 (413)
..++..+..+ .|++.+.+.. .+......+..+.+.|+++.+ ..++|+..|-
T Consensus 154 ~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~---~~~iPlV~hG 207 (281)
T PRK06806 154 STTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEIND---VVHIPLVLHG 207 (281)
T ss_pred CHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHH---hcCCCEEEEC
Confidence 3556666664 4888776522 211111224456666666654 4579999996
No 325
>COG4939 Major membrane immunogen, membrane-anchored lipoprotein [Function unknown]
Probab=27.61 E-value=64 Score=26.02 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=15.1
Q ss_pred cCCCce-eeEEEEECCEEEEcc
Q 015110 54 TPKGVI-SGAVEIKEGNIISIV 74 (413)
Q Consensus 54 ~~~~~~-~~~V~I~dG~I~~Ig 74 (413)
|..++. ...|-|+||+|+++.
T Consensus 42 Dd~gwk~f~~iti~dGKiv~~~ 63 (147)
T COG4939 42 DDHGWKAFVTITIQDGKIVACT 63 (147)
T ss_pred cccCccceEEEEEeCCEEEEEE
Confidence 434443 457899999999974
No 326
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=27.16 E-value=1.4e+02 Score=27.53 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=28.1
Q ss_pred CchhhHHHHHHHHH-cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec
Q 015110 174 ENAYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231 (413)
Q Consensus 174 ~~~~~~~~l~~l~~-~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 231 (413)
+..+.++.-.++++ .|++.+|+--. .+...+++...+.|+||+.|.
T Consensus 92 s~e~av~nA~rl~ke~GadaVKlEGg------------~~~~~~i~~l~~~GIPV~gHi 138 (261)
T PF02548_consen 92 SPEQAVRNAGRLMKEAGADAVKLEGG------------AEIAETIKALVDAGIPVMGHI 138 (261)
T ss_dssp SHHHHHHHHHHHHHTTT-SEEEEEBS------------GGGHHHHHHHHHTT--EEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEeccc------------hhHHHHHHHHHHCCCcEEEEe
Confidence 33445566666766 89999998311 133455666667899999996
No 327
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=27.00 E-value=5.2e+02 Score=24.02 Aligned_cols=27 Identities=19% Similarity=0.047 Sum_probs=18.8
Q ss_pred CchhhHHHHHHHHHcCCcEEEEeecCC
Q 015110 174 ENAYNASALEALLNAGVLGLKSFMCPS 200 (413)
Q Consensus 174 ~~~~~~~~l~~l~~~G~~~ik~~~~~~ 200 (413)
+.+...+.++.+.+.|++.+.+.+-++
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELGvPfS 55 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELGVPFS 55 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCC
Confidence 334456777778889999888765443
No 328
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=26.91 E-value=5.9e+02 Score=24.72 Aligned_cols=165 Identities=11% Similarity=0.087 Sum_probs=85.5
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEEEeecC
Q 015110 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCP 199 (413)
Q Consensus 120 ~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~~~~~ 199 (413)
...++..+.|.--++..- |.....+.+....+...-....|+.|. ....-+.++.|+..+.+ +|
T Consensus 46 ~Qi~~L~~aGceiVRvav----~~~~~a~al~~I~~~~~iPlvADIHFd----------~~lAl~a~~~G~~~iRI--NP 109 (360)
T PRK00366 46 AQIKRLARAGCEIVRVAV----PDMEAAAALPEIKKQLPVPLVADIHFD----------YRLALAAAEAGADALRI--NP 109 (360)
T ss_pred HHHHHHHHcCCCEEEEcc----CCHHHHHhHHHHHHcCCCCEEEecCCC----------HHHHHHHHHhCCCEEEE--CC
Confidence 345566788888777432 333344455444433321222233321 23334556789988866 33
Q ss_pred CCCCCCCCCC-HHHHHHHHHHHHhcCCCEEEecCChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhh
Q 015110 200 SGINDFPMTN-ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 278 (413)
Q Consensus 200 ~~~~~~~~~~-~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~ 278 (413)
.. .-+ .+.++++++.|+++|+++-+=+..-..-.+.+.+.+ ...|. +-.++..+-++++++
T Consensus 110 GN-----ig~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg------------~~t~e-amveSAl~~~~~le~ 171 (360)
T PRK00366 110 GN-----IGKRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYG------------EPTPE-ALVESALRHAKILEE 171 (360)
T ss_pred CC-----CCchHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcC------------CCCHH-HHHHHHHHHHHHHHH
Confidence 22 224 789999999999999999887654443332222221 11222 223344455666776
Q ss_pred cccCCCCCCceEEEEccCChhhHHHHHHHHHHCCCCEEEEccccccccccc
Q 015110 279 TRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 329 (413)
Q Consensus 279 ~~~~~~~~g~~vhi~H~s~~~~~~~~i~~ak~~G~~v~~e~~p~~l~l~~~ 329 (413)
.++ .+..+.+-.-+-. ..++..+...++ ++ +|-||-.++.
T Consensus 172 ~~f----~~iviS~KsS~v~-~~i~ayrlla~~-----~d-yPLHlGvTEA 211 (360)
T PRK00366 172 LGF----DDIKISVKASDVQ-DLIAAYRLLAKR-----CD-YPLHLGVTEA 211 (360)
T ss_pred CCC----CcEEEEEEcCCHH-HHHHHHHHHHhc-----CC-CCceecccCC
Confidence 542 3333333332222 334444443222 22 8878877764
No 329
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=26.84 E-value=4e+02 Score=25.49 Aligned_cols=47 Identities=9% Similarity=0.039 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015110 177 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (413)
Q Consensus 177 ~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~ 233 (413)
.+.+.++.++..|++++-+. + .+.+.+...++.|++.|+||..+-.+
T Consensus 68 ~q~~~i~~li~~~vdgIiv~--~--------~d~~al~~~l~~a~~~gIpVV~~d~~ 114 (336)
T PRK15408 68 GQVQLINNFVNQGYNAIIVS--A--------VSPDGLCPALKRAMQRGVKVLTWDSD 114 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEe--c--------CCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 34567888888999988652 1 34566778888899999999888543
No 330
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=26.83 E-value=4.6e+02 Score=25.32 Aligned_cols=115 Identities=14% Similarity=0.012 Sum_probs=61.8
Q ss_pred CccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-CeeeEEeecee-----cC-CchhhHHHHHHHH
Q 015110 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGGL-----VP-ENAYNASALEALL 186 (413)
Q Consensus 114 ~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~-~~~~~~~~l~~l~ 186 (413)
+.+.+...++.+...|++.+.... ...|. ...+.+.+..+..... +.+.+..+... .. ......+.++++.
T Consensus 80 ~~eeI~~~a~~~~~~G~~~v~l~~-G~~p~-~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~Lk 157 (351)
T TIGR03700 80 SLEEIVARVKEAYAPGATEVHIVG-GLHPN-LPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELK 157 (351)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEec-CCCCC-CCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 345666677777889999998765 33342 3344555555555432 22333321110 00 0111235588888
Q ss_pred HcCCcEEEEeecCCCC-----CCCC-CCCHHHHHHHHHHHHhcCCCEEEe
Q 015110 187 NAGVLGLKSFMCPSGI-----NDFP-MTNASHIKEGLSVLARYKRPLLVH 230 (413)
Q Consensus 187 ~~G~~~ik~~~~~~~~-----~~~~-~~~~~~l~~~~~~A~~~g~~v~~H 230 (413)
++|...+--.-..... .-.+ ..+.+...++++.|++.|+++..+
T Consensus 158 eAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg 207 (351)
T TIGR03700 158 EAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNAT 207 (351)
T ss_pred HcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceE
Confidence 8887654210000000 0011 245677778999999999987665
No 331
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=26.72 E-value=5.8e+02 Score=27.87 Aligned_cols=49 Identities=20% Similarity=0.292 Sum_probs=30.1
Q ss_pred HHHHHHHHcCC--cEEEEeecCCCCCCCCCCCHHHHHHHHHHHH-hcCCCEEEecCChhh
Q 015110 180 SALEALLNAGV--LGLKSFMCPSGINDFPMTNASHIKEGLSVLA-RYKRPLLVHAEMEKG 236 (413)
Q Consensus 180 ~~l~~l~~~G~--~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~-~~g~~v~~H~e~~~~ 236 (413)
+..+++.+.|+ .++|.+. ..+-+..-+.++...+ +.++|+++|.+|...
T Consensus 698 ~lA~el~~~GaHIlaIKDMA--------GLLKP~AA~~Li~aLr~~~dlPIHlHTHDTsG 749 (1149)
T COG1038 698 KLAKELEKAGAHILAIKDMA--------GLLKPAAAYRLISALRETVDLPIHLHTHDTSG 749 (1149)
T ss_pred HHHHHHHhcCCcEEEehhhh--------hccCHHHHHHHHHHHHHhcCCceEEeccCCCc
Confidence 34445556775 4666642 2344455555555555 479999999988764
No 332
>PRK05588 histidinol-phosphatase; Provisional
Probab=26.71 E-value=70 Score=29.30 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=24.5
Q ss_pred eeecccccCCCCCCCccchHHHHHHHHhCCceEE
Q 015110 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTL 133 (413)
Q Consensus 100 lID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv 133 (413)
++|.|+|..... .....+....+.|.+.|++.+
T Consensus 1 ~~D~H~HT~~s~-~~~~~~ee~v~~A~~~Gl~~~ 33 (255)
T PRK05588 1 MFDTHIHTEFST-DSKMKIEEAIKKAKENNLGII 33 (255)
T ss_pred CeeecccCCCCC-CcccCHHHHHHHHHHcCCCEE
Confidence 479999987652 223456778899999999955
No 333
>PLN02858 fructose-bisphosphate aldolase
Probab=26.41 E-value=7.3e+02 Score=29.17 Aligned_cols=112 Identities=14% Similarity=0.087 Sum_probs=57.4
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-ee--eEEeeceecCC----c----hhhHHHHHHHHH-
Q 015110 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YV--DVGFWGGLVPE----N----AYNASALEALLN- 187 (413)
Q Consensus 120 ~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~----~----~~~~~~l~~l~~- 187 (413)
...+.++..|+|++.--. ...|...+.+.-++..+.+.... .+ .++..++.... . ....++..+.++
T Consensus 1183 ~~i~~ai~~Gf~SVM~Dg-S~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~~ 1261 (1378)
T PLN02858 1183 HELLEALELGFDSVMVDG-SHLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFIDE 1261 (1378)
T ss_pred HHHHHHHHhCCCEEEEeC-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccccccCCCCHHHHHHHHHh
Confidence 467889999999985332 22232223333333333333211 11 11111111110 0 113466666665
Q ss_pred cCCcEEEEeec-CCCCCC--CCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015110 188 AGVLGLKSFMC-PSGIND--FPMTNASHIKEGLSVLARYKRPLLVHAE 232 (413)
Q Consensus 188 ~G~~~ik~~~~-~~~~~~--~~~~~~~~l~~~~~~A~~~g~~v~~H~e 232 (413)
-|++.+-+.+. -+|... .|..+.+.|+++-+...+.++|+.+|--
T Consensus 1262 TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGg 1309 (1378)
T PLN02858 1262 TGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGA 1309 (1378)
T ss_pred cCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCC
Confidence 47877655332 122111 2457788888888777667899999953
No 334
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=26.36 E-value=5.5e+02 Score=24.17 Aligned_cols=108 Identities=15% Similarity=0.140 Sum_probs=54.7
Q ss_pred CCccchHHHHHHHHhCCceEEEeCCCCCCC-CCCcHHH----HHHHHHHHhcCCeeeEEeeceecC-CchhhHHHHHHHH
Q 015110 113 TEWEGFPSGTKAAAAGGITTLIDMPLNSDP-STISTET----LKLKVDAAEKRIYVDVGFWGGLVP-ENAYNASALEALL 186 (413)
Q Consensus 113 ~~~e~~~~~~~~al~~GvTTv~d~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~ 186 (413)
-+.+.+....+..+..||-.++-.+ .+.. ...+.+. ++...+...++..+ ..+... ...+..+..+...
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~G-ttGE~~~Ls~eEr~~v~~~~v~~~~grvpv----iaG~g~~~t~eai~lak~a~ 96 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLG-TTGESPTLTLEERKEVLEAVVEAVGGRVPV----IAGVGSNSTAEAIELAKHAE 96 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECC-CCccchhcCHHHHHHHHHHHHHHHCCCCcE----EEecCCCcHHHHHHHHHHHH
Confidence 3445566777888999999888776 2221 1222222 22222333333221 122222 2234455566666
Q ss_pred HcCCcEEEEeecCCCCCCCCCCC-HHHHHHHHHHHHhcCCCEEEe
Q 015110 187 NAGVLGLKSFMCPSGINDFPMTN-ASHIKEGLSVLARYKRPLLVH 230 (413)
Q Consensus 187 ~~G~~~ik~~~~~~~~~~~~~~~-~~~l~~~~~~A~~~g~~v~~H 230 (413)
+.|++++-+..- .+.-.+ .+.++.....+...++|+.+-
T Consensus 97 ~~Gad~il~v~P-----yY~k~~~~gl~~hf~~ia~a~~lPvilY 136 (299)
T COG0329 97 KLGADGILVVPP-----YYNKPSQEGLYAHFKAIAEAVDLPVILY 136 (299)
T ss_pred hcCCCEEEEeCC-----CCcCCChHHHHHHHHHHHHhcCCCEEEE
Confidence 789999865421 111223 334444444555668887775
No 335
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=25.95 E-value=5.6e+02 Score=24.09 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=54.4
Q ss_pred HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-ee--eEEeeceecCC-----c---hhhHHHHHHHHH
Q 015110 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YV--DVGFWGGLVPE-----N---AYNASALEALLN 187 (413)
Q Consensus 119 ~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~-----~---~~~~~~l~~l~~ 187 (413)
....+.++..|+|++.--. ...|...+.+.-++..+.+.... .+ .++..++.... . -...++.+++++
T Consensus 90 ~e~i~~ai~~GftSVMiDg-S~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~ 168 (288)
T TIGR00167 90 EEDCAQAVKAGFSSVMIDG-SHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVK 168 (288)
T ss_pred HHHHHHHHHcCCCEEEecC-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHh
Confidence 3467888999999995332 22332223333333333332211 11 11211111111 0 113466777775
Q ss_pred -cCCcEEEEeecC-CCCC-CCCC-CCHHHHHHHHHHHHhcCCCEEEecCC
Q 015110 188 -AGVLGLKSFMCP-SGIN-DFPM-TNASHIKEGLSVLARYKRPLLVHAEM 233 (413)
Q Consensus 188 -~G~~~ik~~~~~-~~~~-~~~~-~~~~~l~~~~~~A~~~g~~v~~H~e~ 233 (413)
-|++.+-+..+. +|.. .-|. .+.+.|+++-+ ..++|+.+|--+
T Consensus 169 ~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~---~v~vPLVlHGgS 215 (288)
T TIGR00167 169 LTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQK---YVNLPLVLHGGS 215 (288)
T ss_pred ccCCcEEeeccCccccccCCCCCccCHHHHHHHHH---HhCCCEEEeCCC
Confidence 488877654321 2211 1234 66666666644 458999999643
No 336
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=25.66 E-value=1.9e+02 Score=29.84 Aligned_cols=52 Identities=21% Similarity=0.146 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~ 236 (413)
.+.++.+.+.|+..+.+- +......++++.++++..++ .++++.+|++|...
T Consensus 161 ~~~~~~~~~~Gad~i~l~------DTvG~~~P~~v~~li~~l~~~~~v~i~~H~HND~G 213 (524)
T PRK12344 161 LATLKAAAEAGADWVVLC------DTNGGTLPHEVAEIVAEVRAAPGVPLGIHAHNDSG 213 (524)
T ss_pred HHHHHHHHhCCCCeEEEc------cCCCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 344566667898876532 12345788888888888765 48999999988753
No 337
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=25.63 E-value=5.7e+02 Score=24.04 Aligned_cols=110 Identities=20% Similarity=0.225 Sum_probs=54.1
Q ss_pred HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-ee--eEEeeceecCC---c---hhhHHHHHHHHH-c
Q 015110 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YV--DVGFWGGLVPE---N---AYNASALEALLN-A 188 (413)
Q Consensus 119 ~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~---~---~~~~~~l~~l~~-~ 188 (413)
....+.++..|+|++.--. ...|...+.+.-++..+.+.... .+ .++..++..+. . -...++..+.++ -
T Consensus 90 ~e~i~~ai~~GftSVM~Dg-S~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~T 168 (286)
T PRK08610 90 FEKCKEAIDAGFTSVMIDA-SHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKT 168 (286)
T ss_pred HHHHHHHHHcCCCEEEEeC-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHH
Confidence 3456789999999985332 22332223333333333333211 11 11211111110 0 123566667665 4
Q ss_pred CCcEEEEeecC-CCC-CCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015110 189 GVLGLKSFMCP-SGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (413)
Q Consensus 189 G~~~ik~~~~~-~~~-~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e 232 (413)
|++.+-+..+. +|. ...|..+.+.|+++- ++.++|+.+|--
T Consensus 169 gvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~---~~~~vPLVLHGg 211 (286)
T PRK08610 169 GIDALAPALGSVHGPYKGEPKLGFKEMEEIG---LSTGLPLVLHGG 211 (286)
T ss_pred CCCEEEeeccccccccCCCCCCCHHHHHHHH---HHHCCCEEEeCC
Confidence 88876553321 121 112456777777664 356899999964
No 338
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=25.61 E-value=1e+02 Score=29.38 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHhcCC-CEEEecCCh
Q 015110 207 MTNASHIKEGLSVLARYKR-PLLVHAEME 234 (413)
Q Consensus 207 ~~~~~~l~~~~~~A~~~g~-~v~~H~e~~ 234 (413)
+++.+.++++++..+.+++ .++.|..|.
T Consensus 14 f~~~~~ik~~Id~ma~~KlN~lh~HltDd 42 (311)
T cd06570 14 FIPVAVIKRQLDAMASVKLNVFHWHLTDD 42 (311)
T ss_pred CcCHHHHHHHHHHHHHhCCeEEEEEEecC
Confidence 4688999999999999998 579997654
No 339
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=25.38 E-value=1.9e+02 Score=25.91 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015110 176 AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 230 (413)
Q Consensus 176 ~~~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H 230 (413)
..+.+.++.++..|++++-+.. .+.+.+...++.+++.|+||..=
T Consensus 42 ~~q~~~i~~~i~~~~d~Iiv~~----------~~~~~~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 42 EEQIEQIEQAISQGVDGIIVSP----------VDPDSLAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp HHHHHHHHHHHHTTESEEEEES----------SSTTTTHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHhcCCEEEecC----------CCHHHHHHHHHHHhhcCceEEEE
Confidence 4457788889999999987642 22234556778888999998763
No 340
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.32 E-value=4.7e+02 Score=24.00 Aligned_cols=78 Identities=9% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCEEEec-------CChhhchhhHhhccCcCCccccccCCCCCchHHHHHHHHHHHHHHhhcccCC
Q 015110 211 SHIKEGLSVLARYKRPLLVHA-------EMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 283 (413)
Q Consensus 211 ~~l~~~~~~A~~~g~~v~~H~-------e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~~v~~~~~~a~~~~~~~ 283 (413)
+.+++.++.|+++|.++..-. .+.+.....+. ..++++.++|++.
T Consensus 99 ~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~------------------------~~l~~l~~~A~~~---- 150 (283)
T PRK13209 99 EIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFI------------------------DGLKESVELASRA---- 150 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHH------------------------HHHHHHHHHHHHh----
Q ss_pred CCCCceEEE-----EccCChhhHHHHHHHHHHCCCCEEEEc
Q 015110 284 PAEGAHLHI-----VHLSDASSSLDLLMEAKTNGDSITVET 319 (413)
Q Consensus 284 ~~~g~~vhi-----~H~s~~~~~~~~i~~ak~~G~~v~~e~ 319 (413)
|+++.+ .++++.++.+++++.....++.+..|+
T Consensus 151 ---GV~i~iE~~~~~~~~~~~~~~~ll~~v~~~~lgl~~D~ 188 (283)
T PRK13209 151 ---SVTLAFEIMDTPFMNSISKALGYAHYLNSPWFQLYPDI 188 (283)
T ss_pred ---CCEEEEeecCCcccCCHHHHHHHHHHhCCCccceEecc
No 341
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=24.95 E-value=92 Score=30.51 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEEec-CChhhchhhHh
Q 015110 209 NASHIKEGLSVLARYKRPLLVHA-EMEKGSERHVK 242 (413)
Q Consensus 209 ~~~~l~~~~~~A~~~g~~v~~H~-e~~~~~~~~~~ 242 (413)
..+.++++++.|+++|+++..|+ +..+.+.....
T Consensus 207 ~~e~i~~~v~~A~~~G~~v~sH~~~~~e~i~~a~~ 241 (376)
T TIGR02318 207 GLANRSEIAALARARGIPLASHDDDTPEHVAEAHD 241 (376)
T ss_pred cHHHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHH
Confidence 57899999999999999999998 67766554433
No 342
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=24.80 E-value=5.9e+02 Score=23.95 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc---CCCEEEec
Q 015110 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHA 231 (413)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~---g~~v~~H~ 231 (413)
+.++.+++.|+.++-+.- .. +.+..++.+|-+++++.+.+. .++|.+++
T Consensus 32 ~li~~l~~~Gv~Gi~~~G-st--GE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv 83 (303)
T PRK03620 32 EHLEWLAPYGAAALFAAG-GT--GEFFSLTPDEYSQVVRAAVETTAGRVPVIAGA 83 (303)
T ss_pred HHHHHHHHcCCCEEEECc-CC--cCcccCCHHHHHHHHHHHHHHhCCCCcEEEec
Confidence 334444556666653321 11 234455666666665544431 35666664
No 343
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=24.75 E-value=5.9e+02 Score=23.91 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=54.2
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-ee--eEEeeceecCC-----c---hhhHHHHHHHHH-
Q 015110 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YV--DVGFWGGLVPE-----N---AYNASALEALLN- 187 (413)
Q Consensus 120 ~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~-----~---~~~~~~l~~l~~- 187 (413)
.....++..|+|++.--. ...|...+.+.-++..+.+.... .+ .++..++.... . -...++..+.++
T Consensus 88 e~i~~ai~~GftSVM~Dg-S~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~ 166 (284)
T PRK12857 88 EQVMKCIRNGFTSVMIDG-SKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEE 166 (284)
T ss_pred HHHHHHHHcCCCeEEEeC-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHH
Confidence 457889999999985332 22333223333333334333221 11 11211111110 0 113456666664
Q ss_pred cCCcEEEEeecC-CCC-CCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015110 188 AGVLGLKSFMCP-SGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (413)
Q Consensus 188 ~G~~~ik~~~~~-~~~-~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e 232 (413)
-|++.+-+..+. +|. ...|..+.+.|+++-+ ..+.|+.+|--
T Consensus 167 TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~---~~~vPLVlHGg 210 (284)
T PRK12857 167 TGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKE---LVNIPIVLHGS 210 (284)
T ss_pred HCCCEEeeccCccccccCCCCcCCHHHHHHHHH---HhCCCEEEeCC
Confidence 488776553321 121 1124577777777754 35899999953
No 344
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=24.63 E-value=5.1e+02 Score=23.69 Aligned_cols=46 Identities=17% Similarity=-0.078 Sum_probs=31.9
Q ss_pred HHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015110 182 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (413)
Q Consensus 182 l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~ 233 (413)
.+.+...|.+.+-+-+-. ...+.+.+..++..++..|+...+-..+
T Consensus 26 ~e~~a~~G~D~v~iD~EH------g~~~~~~~~~~~~a~~~~g~~~~VRvp~ 71 (249)
T TIGR03239 26 TEVLGLAGFDWLLLDGEH------APNDVLTFIPQLMALKGSASAPVVRPPW 71 (249)
T ss_pred HHHHHhcCCCEEEEeccc------CCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 344455787776553322 2468889999999999899888887643
No 345
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=24.56 E-value=5.5e+02 Score=23.50 Aligned_cols=29 Identities=3% Similarity=0.080 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEecCChhh
Q 015110 208 TNASHIKEGLSVLARYKRPLLVHAEMEKG 236 (413)
Q Consensus 208 ~~~~~l~~~~~~A~~~g~~v~~H~e~~~~ 236 (413)
-++..+++.++.|+++|+.+-.|..-++.
T Consensus 39 GDp~~M~~tv~lA~~~gV~iGAHPsyPD~ 67 (242)
T PF03746_consen 39 GDPETMRRTVRLAKEHGVAIGAHPSYPDR 67 (242)
T ss_dssp --HHHHHHHHHHHHHTT-EEEEE---S-T
T ss_pred cCHHHHHHHHHHHHHcCCEeccCCCCCCC
Confidence 37889999999999999999999876664
No 346
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=24.56 E-value=4.9e+02 Score=23.92 Aligned_cols=46 Identities=20% Similarity=-0.042 Sum_probs=32.0
Q ss_pred HHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015110 182 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (413)
Q Consensus 182 l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~ 233 (413)
.+-+...|.+.+-+-+-. ...+.+.+..++..++..|+...+-..+
T Consensus 33 ~e~~a~~G~D~v~iD~EH------g~~~~~~~~~~i~a~~~~g~~~lVRvp~ 78 (256)
T PRK10558 33 TEVLGLAGFDWLVLDGEH------APNDVSTFIPQLMALKGSASAPVVRVPT 78 (256)
T ss_pred HHHHHhcCCCEEEEcccc------CCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 344455787776553322 2468889999999999999988887643
No 347
>PRK09389 (R)-citramalate synthase; Provisional
Probab=24.51 E-value=6.8e+02 Score=25.55 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=35.4
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEecCChhh
Q 015110 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 236 (413)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~e~~~~ 236 (413)
+.++.+.+.|+..+.+- . ......+.++.++++..++ .++++.+|++|...
T Consensus 147 ~~~~~~~~~Ga~~i~l~--D----TvG~~~P~~~~~lv~~l~~~~~v~l~~H~HND~G 198 (488)
T PRK09389 147 ELYKAGIEAGADRICFC--D----TVGILTPEKTYELFKRLSELVKGPVSIHCHNDFG 198 (488)
T ss_pred HHHHHHHhCCCCEEEEe--c----CCCCcCHHHHHHHHHHHHhhcCCeEEEEecCCcc
Confidence 44556667898876442 1 2245688888888887764 57899999988753
No 348
>PTZ00413 lipoate synthase; Provisional
Probab=24.24 E-value=6.8e+02 Score=24.73 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=42.0
Q ss_pred EeeceecCCchhhHHHHHHHHHcCCcEEEE--eecCCCCCCC---CCCCHHHHHHHHHHHHhcCCC
Q 015110 166 GFWGGLVPENAYNASALEALLNAGVLGLKS--FMCPSGINDF---PMTNASHIKEGLSVLARYKRP 226 (413)
Q Consensus 166 ~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~--~~~~~~~~~~---~~~~~~~l~~~~~~A~~~g~~ 226 (413)
++..|+.....+.++.+..+.+.|++.+.+ |+.|+.. +. .|.+++++...-+.|.+.|..
T Consensus 300 GiIVGLGET~eEvie~m~dLrelGVDivtIGQYL~Ps~~-h~~V~~yv~P~~F~~~~~~a~~~Gf~ 364 (398)
T PTZ00413 300 SIMLGLGETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKT-RLKVSRYAHPKEFEMWEEEAMKMGFL 364 (398)
T ss_pred eeEecCCCCHHHHHHHHHHHHHcCCcEEeeccccCCCcc-cCCceeccCHHHHHHHHHHHHHcCCc
Confidence 444455555556677788888899887655 5555432 22 267899999999999998876
No 349
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.96 E-value=5.7e+02 Score=23.53 Aligned_cols=87 Identities=17% Similarity=0.062 Sum_probs=0.0
Q ss_pred hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHh-cCCeeeEEeeceecCCch-hhHHHHHHHHHcCCcEEEE
Q 015110 118 FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE-KRIYVDVGFWGGLVPENA-YNASALEALLNAGVLGLKS 195 (413)
Q Consensus 118 ~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~G~~~ik~ 195 (413)
+..+...||++|+| .+.+-+..+... ....+.+-+..-+.+-.. ...+-++++.+.|++++-+
T Consensus 59 Iq~a~~~AL~~G~~---------------~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGvii 123 (258)
T PRK13111 59 IQAASLRALAAGVT---------------LADVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLII 123 (258)
T ss_pred HHHHHHHHHHcCCC---------------HHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEE
Q ss_pred eecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEE
Q 015110 196 FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 229 (413)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~ 229 (413)
|-...++....++.++++|+....
T Consensus 124 ----------pDLp~ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 124 ----------PDLPPEEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred ----------CCCCHHHHHHHHHHHHHcCCcEEE
No 350
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=23.85 E-value=7e+02 Score=24.45 Aligned_cols=47 Identities=17% Similarity=0.139 Sum_probs=24.6
Q ss_pred HHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh----c-C-CCEEEecCChhh
Q 015110 182 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR----Y-K-RPLLVHAEMEKG 236 (413)
Q Consensus 182 l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~----~-g-~~v~~H~e~~~~ 236 (413)
.+.+.+.|+..+-.... ..+.+.+.+.++..++ . + ..+.+|.|.+.+
T Consensus 83 ~~~~~~~GvTt~l~t~~--------t~~~~~~~~~l~~~~~~~~~~~~a~~lG~HlEGPfi 135 (380)
T TIGR00221 83 SERLPKSGCTSFLPTLI--------TQPDENIKQAVKNMREYLAKEKNAQALGLHLEGPFL 135 (380)
T ss_pred HHHHHhcCeeEEeeecc--------CCCHHHHHHHHHHHHHHHhccCCceeeeEeeecCcC
Confidence 34445677766533211 2244455554444433 1 2 357889988765
No 351
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=23.84 E-value=5.5e+02 Score=23.81 Aligned_cols=46 Identities=13% Similarity=0.005 Sum_probs=31.0
Q ss_pred HHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015110 182 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (413)
Q Consensus 182 l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~ 233 (413)
.+.+...|.+.+-+-+-. ...+.+++..++..++..|....+....
T Consensus 32 ~E~~a~~GfD~v~iD~EH------g~~~~~~l~~~i~a~~~~g~~~lVRvp~ 77 (267)
T PRK10128 32 AEIAATSGYDWLLIDGEH------APNTIQDLYHQLQAIAPYASQPVIRPVE 77 (267)
T ss_pred HHHHHHcCCCEEEEcccc------CCCCHHHHHHHHHHHHhcCCCeEEECCC
Confidence 344456787776543322 2458888888999888888888777643
No 352
>PRK06852 aldolase; Validated
Probab=23.71 E-value=1e+02 Score=29.19 Aligned_cols=50 Identities=8% Similarity=0.056 Sum_probs=32.0
Q ss_pred HHHHHHHHcC------CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec
Q 015110 180 SALEALLNAG------VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231 (413)
Q Consensus 180 ~~l~~l~~~G------~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 231 (413)
..+++.++.| ++++++.+...+ .......+.+.++.+.|+++|+|+.+.+
T Consensus 119 ~sVeeAvrlG~~~~~~AdAV~v~v~~Gs--~~E~~ml~~l~~v~~ea~~~GlPll~~~ 174 (304)
T PRK06852 119 LDVEQVVEFKENSGLNILGVGYTIYLGS--EYESEMLSEAAQIIYEAHKHGLIAVLWI 174 (304)
T ss_pred ecHHHHHhcCCccCCCceEEEEEEecCC--HHHHHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 4477788877 667665544321 1111234467788899999999998754
No 353
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=23.68 E-value=3.7e+02 Score=25.25 Aligned_cols=47 Identities=9% Similarity=0.070 Sum_probs=33.5
Q ss_pred hHHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec
Q 015110 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231 (413)
Q Consensus 178 ~~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 231 (413)
..+.+++++++--..|.+.|. ...+.+.+..++++|.+.+++|-+=.
T Consensus 135 IKE~vR~~I~~A~kVIAIVMD-------~FTD~dIf~DLleAa~kR~VpVYiLL 181 (284)
T PF07894_consen 135 IKEVVRRMIQQAQKVIAIVMD-------VFTDVDIFCDLLEAANKRGVPVYILL 181 (284)
T ss_pred HHHHHHHHHHHhcceeEEEee-------ccccHHHHHHHHHHHHhcCCcEEEEe
Confidence 456777777654444555553 24588899999999989999987755
No 354
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=23.62 E-value=2.5e+02 Score=25.91 Aligned_cols=54 Identities=17% Similarity=0.131 Sum_probs=40.4
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCChhhchhhH
Q 015110 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV 241 (413)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~ 241 (413)
-.+.+....|++.+-+.. ...+++.+.++++.|+.+|+-+.+-+++..+++..+
T Consensus 122 ~QI~eA~~~GADaVLLI~--------~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al 175 (254)
T PF00218_consen 122 YQIYEARAAGADAVLLIA--------AILSDDQLEELLELAHSLGLEALVEVHNEEELERAL 175 (254)
T ss_dssp HHHHHHHHTT-SEEEEEG--------GGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHH
T ss_pred HHHHHHHHcCCCEeehhH--------HhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHH
Confidence 457777789999986643 247889999999999999998888877777665444
No 355
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=23.53 E-value=4.6e+02 Score=22.22 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=54.1
Q ss_pred ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc-CCeeeEEeecee-cCCchhhHHHHHHHHHcCCcE
Q 015110 115 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-RIYVDVGFWGGL-VPENAYNASALEALLNAGVLG 192 (413)
Q Consensus 115 ~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~G~~~ 192 (413)
.+.+....+.++++|+..+.-.+ +.++...+...+ +..+-++..... .....+..+..++..+.|+++
T Consensus 12 ~~~~~~~~~~~~~~gv~gi~~~g----------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~ 81 (201)
T cd00945 12 LEDIAKLCDEAIEYGFAAVCVNP----------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADE 81 (201)
T ss_pred HHHHHHHHHHHHHhCCcEEEECH----------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 44566778888999998876442 344544444333 222222211000 000234567778888899999
Q ss_pred EEEeecCCCCCCCCCCC--HHHHHHHHHHHHh---cCCCEEEec
Q 015110 193 LKSFMCPSGINDFPMTN--ASHIKEGLSVLAR---YKRPLLVHA 231 (413)
Q Consensus 193 ik~~~~~~~~~~~~~~~--~~~l~~~~~~A~~---~g~~v~~H~ 231 (413)
+.+...+ +...+ .+.+.+.++...+ .++++.+..
T Consensus 82 i~v~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~ 120 (201)
T cd00945 82 IDVVINI-----GSLKEGDWEEVLEEIAAVVEAADGGLPLKVIL 120 (201)
T ss_pred EEEeccH-----HHHhCCCHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 8764211 00112 3444444443333 488988865
No 356
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=23.45 E-value=4.4e+02 Score=24.17 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhcCCCE-EEec
Q 015110 211 SHIKEGLSVLARYKRPL-LVHA 231 (413)
Q Consensus 211 ~~l~~~~~~A~~~g~~v-~~H~ 231 (413)
+.++++++.|+++|.+. .+|.
T Consensus 85 ~~~~~~i~~A~~lG~~~v~~~~ 106 (279)
T cd00019 85 ERLKDEIERCEELGIRLLVFHP 106 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEECC
Confidence 46777777888877764 4454
No 357
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=23.41 E-value=6.1e+02 Score=25.91 Aligned_cols=52 Identities=23% Similarity=0.214 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-----CCCEEEecCChhh
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-----KRPLLVHAEMEKG 236 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~-----g~~v~~H~e~~~~ 236 (413)
.+.++.+.+.|+..+.+- +......++++.++++..++. ++++.+|++|...
T Consensus 149 ~~~~~~~~~~Ga~~i~l~------DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~G 205 (494)
T TIGR00973 149 ARIVEAAINAGATTINIP------DTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLG 205 (494)
T ss_pred HHHHHHHHHcCCCEEEeC------CCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCC
Confidence 345556667888776442 123457888888888887653 4679999988753
No 358
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=22.96 E-value=7.6e+02 Score=24.59 Aligned_cols=108 Identities=12% Similarity=-0.027 Sum_probs=56.7
Q ss_pred cchHHHHHHHHhCCceEEEeCCCCCCCC-CCcHHHHHHHH---HHHhcC-C-eeeEEeeceecCCchhhHHHHHHHHHcC
Q 015110 116 EGFPSGTKAAAAGGITTLIDMPLNSDPS-TISTETLKLKV---DAAEKR-I-YVDVGFWGGLVPENAYNASALEALLNAG 189 (413)
Q Consensus 116 e~~~~~~~~al~~GvTTv~d~~~~~~~~-~~~~~~~~~~~---~~~~~~-~-~~~~~~~~~~~~~~~~~~~~l~~l~~~G 189 (413)
+.+...+.....+|+--+-|--.-.+++ ....+.+.... +++... + ..-|.+ .++....+..+..+.+.+.|
T Consensus 160 ~~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~--NiT~~~~em~~ra~~~~~~G 237 (412)
T TIGR03326 160 EEHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYLA--NITAPVREMERRAELVADLG 237 (412)
T ss_pred HHHHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCcceEEE--EecCCHHHHHHHHHHHHHhC
Confidence 4556678888999998887642111111 11233333322 222211 1 111222 23434445556666667788
Q ss_pred CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015110 190 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (413)
Q Consensus 190 ~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~ 233 (413)
+..+-+-... .-...++.+.+.+...+++++.|...
T Consensus 238 ~~~~mv~~~~--------~G~~~l~~l~~~~~~~~l~ih~Hra~ 273 (412)
T TIGR03326 238 GQYVMVDVVV--------CGWSALQYIRELTEDLGLAIHAHRAM 273 (412)
T ss_pred CCeEEEEeec--------cchHHHHHHHHhhccCCeEEEEcCCc
Confidence 8766442211 22345666666666778999999643
No 359
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=22.87 E-value=6e+02 Score=23.38 Aligned_cols=44 Identities=18% Similarity=0.223 Sum_probs=32.5
Q ss_pred hhhHHHHHHHHH-cCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec
Q 015110 176 AYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231 (413)
Q Consensus 176 ~~~~~~l~~l~~-~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 231 (413)
.+..+...++++ .|+.++|+= +.+++.+.++.+.+.|+||+.|.
T Consensus 90 ~~av~~a~r~~~~aGa~aVkiE------------d~~~~~~~I~al~~agipV~gHi 134 (254)
T cd06557 90 EQALRNAARLMKEAGADAVKLE------------GGAEVAETIRALVDAGIPVMGHI 134 (254)
T ss_pred HHHHHHHHHHHHHhCCeEEEEc------------CcHHHHHHHHHHHHcCCCeeccc
Confidence 344555566666 999999871 22467778888889999999996
No 360
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.53 E-value=2.5e+02 Score=28.91 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=18.6
Q ss_pred chhhHHHhhHHHHHHHHHHHHHhh
Q 015110 4 LNLQWRLLPTLTLLAASLFLLVFK 27 (413)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~ 27 (413)
..-+|-+.|.+.++.+++++++|.
T Consensus 7 l~pl~~~~~ivvv~i~~ilv~if~ 30 (548)
T COG2268 7 LMPLLMLIAIVVVVILVILVLIFF 30 (548)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344588888888888888888877
No 361
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=22.45 E-value=6.4e+02 Score=23.54 Aligned_cols=109 Identities=20% Similarity=0.202 Sum_probs=53.7
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-ee--eEEeeceecCC---c---hhhHHHHHHHHH-cC
Q 015110 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YV--DVGFWGGLVPE---N---AYNASALEALLN-AG 189 (413)
Q Consensus 120 ~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~---~---~~~~~~l~~l~~-~G 189 (413)
.....++..|+|++.--. ...|...+.+.-++..+.+.... .+ .++..++.... . -...++..+.++ -|
T Consensus 83 ~~i~~ai~~GftSVMiD~-S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~Tg 161 (276)
T cd00947 83 ELIKRAIRAGFSSVMIDG-SHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETG 161 (276)
T ss_pred HHHHHHHHhCCCEEEeCC-CCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHC
Confidence 456788999999995332 22332223333333333333221 11 11211111111 0 113566667665 48
Q ss_pred CcEEEEeecC-CCCC--CCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015110 190 VLGLKSFMCP-SGIN--DFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (413)
Q Consensus 190 ~~~ik~~~~~-~~~~--~~~~~~~~~l~~~~~~A~~~g~~v~~H~e 232 (413)
++.+.+..+. +|.. ..|..+.+.|+++-+.. ++|+.+|--
T Consensus 162 vD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~---~vPLVlHGg 204 (276)
T cd00947 162 VDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV---NVPLVLHGG 204 (276)
T ss_pred CCEEEeccCccccccCCCCCccCHHHHHHHHHHh---CCCEEEeCC
Confidence 8776553321 2211 13456777777665554 899999953
No 362
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=22.25 E-value=6.6e+02 Score=23.59 Aligned_cols=110 Identities=21% Similarity=0.228 Sum_probs=55.2
Q ss_pred HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-ee--eEEeeceecCC---c---hhhHHHHHHHHH-c
Q 015110 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YV--DVGFWGGLVPE---N---AYNASALEALLN-A 188 (413)
Q Consensus 119 ~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~---~---~~~~~~l~~l~~-~ 188 (413)
....+.++..|+|++.--. ...|...+.+.-++..+.+.... .+ .++..++.... . -...++..+.++ -
T Consensus 90 ~e~i~~ai~~GftSVM~Dg-S~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~T 168 (285)
T PRK07709 90 FEKCKEAIDAGFTSVMIDA-SHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEAT 168 (285)
T ss_pred HHHHHHHHHcCCCEEEEeC-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHh
Confidence 3467789999999985332 22333333333334444433211 11 11211111110 0 123566666665 5
Q ss_pred CCcEEEEeecC-CCC-CCCCCCCHHHHHHHHHHHHhcCCCEEEecC
Q 015110 189 GVLGLKSFMCP-SGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (413)
Q Consensus 189 G~~~ik~~~~~-~~~-~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e 232 (413)
|++.+-+..+. +|. ..-|..+.+.|+++. ++.++|+.+|--
T Consensus 169 gvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~---~~~~iPLVLHGg 211 (285)
T PRK07709 169 GIDCLAPALGSVHGPYKGEPNLGFAEMEQVR---DFTGVPLVLHGG 211 (285)
T ss_pred CCCEEEEeecccccCcCCCCccCHHHHHHHH---HHHCCCEEEeCC
Confidence 88876553321 121 112456777777754 456999999963
No 363
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=22.12 E-value=8.4e+02 Score=24.77 Aligned_cols=107 Identities=14% Similarity=0.067 Sum_probs=63.3
Q ss_pred CccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC----C-eeeEEeeceecCCchhhHHHHHHHHHc
Q 015110 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR----I-YVDVGFWGGLVPENAYNASALEALLNA 188 (413)
Q Consensus 114 ~~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~l~~l~~~ 188 (413)
+.+.+...++.+...|++.+.-.. +..|.....+.+...++..... . ...+....+ + ...+++++|.+.
T Consensus 116 s~EEI~~ea~~~~~~G~~~i~Lvs-Ge~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig--~---lt~eey~~Lkea 189 (469)
T PRK09613 116 TQEEIREEVKALEDMGHKRLALVA-GEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVNIA--P---TTVENYKKLKEA 189 (469)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEe-CCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEEee--c---CCHHHHHHHHHc
Confidence 345666777888899999998765 4444445566666665555421 1 111222111 1 235788899999
Q ss_pred CCcEEEEeecC------CCCC-CCCCCCHHHHHHHHHHHHhcCCC
Q 015110 189 GVLGLKSFMCP------SGIN-DFPMTNASHIKEGLSVLARYKRP 226 (413)
Q Consensus 189 G~~~ik~~~~~------~~~~-~~~~~~~~~l~~~~~~A~~~g~~ 226 (413)
|+..+.++.-. .... ..+.-+.+.-...++.|++.|+.
T Consensus 190 Gv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~ 234 (469)
T PRK09613 190 GIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGID 234 (469)
T ss_pred CCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 99887665321 0000 01234566667788888888886
No 364
>cd01733 LSm10 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm10 is an SmD1-like protein which is thought to bind U7 snRNA along with LSm11 and five other Sm subunits to form a 7-member ring structure. LSm10 and the U7 snRNP of which it is a part are thought to play an important role in histone mRNA 3' processing.
Probab=21.68 E-value=2.1e+02 Score=20.98 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=21.9
Q ss_pred CcceEEEccEEEcCCCce--eeEEEEECCEEEEc
Q 015110 42 YNQYWLTSKRIVTPKGVI--SGAVEIKEGNIISI 73 (413)
Q Consensus 42 ~~~lli~n~~vi~~~~~~--~~~V~I~dG~I~~I 73 (413)
.+.+.+.|+.++++++.. -+.+.|++..|..|
T Consensus 42 ~MNl~L~~~~~~~~~~~~~~~~~v~IRG~nI~yI 75 (78)
T cd01733 42 FMNIRLAKVTIIDRNGKQVQVEEIMVTGRNIRYV 75 (78)
T ss_pred CceeEEEEEEEEcCCCceeECCcEEEECCEEEEE
Confidence 457777788777665532 36778888777766
No 365
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=21.63 E-value=5.8e+02 Score=23.22 Aligned_cols=18 Identities=11% Similarity=0.025 Sum_probs=12.1
Q ss_pred hHHHHHHHHhCCceEEEe
Q 015110 118 FPSGTKAAAAGGITTLID 135 (413)
Q Consensus 118 ~~~~~~~al~~GvTTv~d 135 (413)
+....+.+.+.|++.+--
T Consensus 15 l~~~l~~~~~~G~~~vEl 32 (275)
T PRK09856 15 IEHAFRDASELGYDGIEI 32 (275)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 455667777778777753
No 366
>PRK14847 hypothetical protein; Provisional
Probab=21.40 E-value=7.4e+02 Score=23.87 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=15.0
Q ss_pred CCcchHhHHHHHHhhhccccC
Q 015110 389 GGISSLQIFCSLFFLSRGLMG 409 (413)
Q Consensus 389 ~G~~~~e~~l~~~~~~~gv~~ 409 (413)
.|...+|.++..|. ..|+..
T Consensus 280 aGNa~lE~v~~~L~-~~g~~~ 299 (333)
T PRK14847 280 TGNVDLVALALNLE-RQGIAS 299 (333)
T ss_pred ccchhHHHHHHHHH-hcCCCC
Confidence 57788998888886 457764
No 367
>PRK00915 2-isopropylmalate synthase; Validated
Probab=21.25 E-value=7e+02 Score=25.61 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhc-C----CCEEEecCChhh
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-K----RPLLVHAEMEKG 236 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~-g----~~v~~H~e~~~~ 236 (413)
.+.++.+.+.|+..+.+- . .....+++++.++++..++. + +++.+|++|...
T Consensus 152 ~~~~~~~~~~Ga~~i~l~--D----TvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~G 208 (513)
T PRK00915 152 CRVVEAAIDAGATTINIP--D----TVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLG 208 (513)
T ss_pred HHHHHHHHHcCCCEEEEc--c----CCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCC
Confidence 455556667898776442 1 23457888898888887653 3 789999987753
No 368
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=21.21 E-value=7e+02 Score=23.49 Aligned_cols=104 Identities=10% Similarity=0.067 Sum_probs=56.0
Q ss_pred cchHHHHHHHHhCCceEEEeCCCCCCCCC------CcHHHHHHHHHHHhcCCeeeEEeeceecCCch---hhHHHHHHHH
Q 015110 116 EGFPSGTKAAAAGGITTLIDMPLNSDPST------ISTETLKLKVDAAEKRIYVDVGFWGGLVPENA---YNASALEALL 186 (413)
Q Consensus 116 e~~~~~~~~al~~GvTTv~d~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~l~ 186 (413)
..+......+...||+.++....+ .|.. ...+.++ .++.. ....+.+.++....+... ..++.+++-+
T Consensus 97 ~~l~~~L~~~~~~GI~niLaLrGD-~p~~~~~~~~~a~dLv~-li~~~-~~~~i~va~yPeghp~~~~~~~dl~~Lk~K~ 173 (296)
T PRK09432 97 DELRTIAKDYWNNGIRHIVALRGD-LPPGSGKPEMYASDLVT-LLKSV-ADFDISVAAYPEVHPEAKSAQADLINLKRKV 173 (296)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCC-CCCCCCCCCcCHHHHHH-HHHHh-CCCccceeeCCCCCCCCCCHHHHHHHHHHHH
Confidence 344555667789999999887522 2211 1123333 23322 222233333322222211 2334555556
Q ss_pred HcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec
Q 015110 187 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231 (413)
Q Consensus 187 ~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 231 (413)
+.|+..+-. .+.++.+.+.+.++.+++.|+.+-+++
T Consensus 174 ~aGA~~~iT---------Q~~Fd~~~~~~f~~~~~~~Gi~vPIi~ 209 (296)
T PRK09432 174 DAGANRAIT---------QFFFDVESYLRFRDRCVSAGIDVEIVP 209 (296)
T ss_pred HcCCCeeec---------ccccchHHHHHHHHHHHHcCCCCCEEe
Confidence 689875432 345788999999999998885444443
No 369
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=21.07 E-value=7.9e+02 Score=24.03 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCC--CCCCCC----HHHHHHHHHHHHhcCCCEEEecCChh
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGIN--DFPMTN----ASHIKEGLSVLARYKRPLLVHAEMEK 235 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~--~~~~~~----~~~l~~~~~~A~~~g~~v~~H~e~~~ 235 (413)
.+.++.+.+.|+..+.++...+... .....+ .+.+.++++.|++.|..+.+.+++..
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~ 140 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDAS 140 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 4567888888988887765432100 000112 24566788899999999998876543
No 370
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=20.81 E-value=4.8e+02 Score=23.42 Aligned_cols=24 Identities=17% Similarity=0.089 Sum_probs=17.0
Q ss_pred CccchHHHHHHHHhCCceEEEeCC
Q 015110 114 EWEGFPSGTKAAAAGGITTLIDMP 137 (413)
Q Consensus 114 ~~e~~~~~~~~al~~GvTTv~d~~ 137 (413)
+.+++...++.+...|+-+++..|
T Consensus 20 t~~~i~~~~~~A~~~~~~avcv~p 43 (221)
T PRK00507 20 TEEDIDKLCDEAKEYGFASVCVNP 43 (221)
T ss_pred CHHHHHHHHHHHHHhCCeEEEECH
Confidence 456677777788888888777554
No 371
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=20.78 E-value=7e+02 Score=23.37 Aligned_cols=61 Identities=20% Similarity=0.127 Sum_probs=42.2
Q ss_pred EeeceecCCchhhHHHHHHHHHcCCcEEEE--eecCCCCCC--CCCCCHHHHHHHHHHHHhcCCC
Q 015110 166 GFWGGLVPENAYNASALEALLNAGVLGLKS--FMCPSGIND--FPMTNASHIKEGLSVLARYKRP 226 (413)
Q Consensus 166 ~~~~~~~~~~~~~~~~l~~l~~~G~~~ik~--~~~~~~~~~--~~~~~~~~l~~~~~~A~~~g~~ 226 (413)
+...|+.....+.++.++++.+.|++-+.+ |+.++..+. ..+.+++++...-+.|.+.|..
T Consensus 218 giMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYlqPS~~HlpV~ryv~PeeF~~~~~~a~~~GF~ 282 (306)
T COG0320 218 GLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYLQPSRKHLPVQRYVTPEEFDELEEVAEEMGFL 282 (306)
T ss_pred ceeeecCCcHHHHHHHHHHHHHcCCCEEEeccccCCccccCCceeccCHHHHHHHHHHHHHccch
Confidence 344455555566778889999999876544 566543211 1367999999999999988753
No 372
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.77 E-value=6.8e+02 Score=23.22 Aligned_cols=41 Identities=22% Similarity=0.118 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015110 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 230 (413)
Q Consensus 180 ~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H 230 (413)
+-++++.+.|++++-+ +.+..++-..+.+.++++|+-...=
T Consensus 113 ~F~~~~~~~GvdGliv----------pDLP~ee~~~~~~~~~~~gi~~I~l 153 (265)
T COG0159 113 KFLRRAKEAGVDGLLV----------PDLPPEESDELLKAAEKHGIDPIFL 153 (265)
T ss_pred HHHHHHHHcCCCEEEe----------CCCChHHHHHHHHHHHHcCCcEEEE
Confidence 3467777899999855 2345566667778888899865544
No 373
>PRK07094 biotin synthase; Provisional
Probab=20.70 E-value=7.2e+02 Score=23.43 Aligned_cols=109 Identities=16% Similarity=0.031 Sum_probs=61.3
Q ss_pred ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCeeeEEeeceecCCchhhHHHHHHHHHcCCcEEE
Q 015110 115 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 194 (413)
Q Consensus 115 ~e~~~~~~~~al~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~~~ik 194 (413)
.+.+....+.+.+.|++.+.-.. +..+ ....+.+...++.......+.+.+..+ . ...+.++.+.+.|+..+.
T Consensus 72 ~eei~~~~~~~~~~g~~~i~l~g-G~~~-~~~~~~l~~l~~~i~~~~~l~i~~~~g--~---~~~e~l~~Lk~aG~~~v~ 144 (323)
T PRK07094 72 PEEILECAKKAYELGYRTIVLQS-GEDP-YYTDEKIADIIKEIKKELDVAITLSLG--E---RSYEEYKAWKEAGADRYL 144 (323)
T ss_pred HHHHHHHHHHHHHCCCCEEEEec-CCCC-CCCHHHHHHHHHHHHccCCceEEEecC--C---CCHHHHHHHHHcCCCEEE
Confidence 34555666777788999887553 2222 223455555555554322222222211 1 124567788889988776
Q ss_pred EeecCCCC----CCCCCCCHHHHHHHHHHHHhcCCCEEEe
Q 015110 195 SFMCPSGI----NDFPMTNASHIKEGLSVLARYKRPLLVH 230 (413)
Q Consensus 195 ~~~~~~~~----~~~~~~~~~~l~~~~~~A~~~g~~v~~H 230 (413)
+.+..... .-.+..+.+...+.++.+++.|+.+..+
T Consensus 145 ~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~ 184 (323)
T PRK07094 145 LRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSG 184 (323)
T ss_pred eccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecce
Confidence 43321100 0012346778888999999999876655
No 374
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=20.41 E-value=9.1e+02 Score=24.53 Aligned_cols=108 Identities=11% Similarity=-0.051 Sum_probs=56.9
Q ss_pred cchHHHHHHHHhCCceEEEeCCCCCCC-CCCcHHHHHHHH---HHHhcC-Ce-eeEEeeceecCC-chhhHHHHHHHHHc
Q 015110 116 EGFPSGTKAAAAGGITTLIDMPLNSDP-STISTETLKLKV---DAAEKR-IY-VDVGFWGGLVPE-NAYNASALEALLNA 188 (413)
Q Consensus 116 e~~~~~~~~al~~GvTTv~d~~~~~~~-~~~~~~~~~~~~---~~~~~~-~~-~~~~~~~~~~~~-~~~~~~~l~~l~~~ 188 (413)
+.+...+.+.+.+|+--+-|--.-.++ .....+.+.... +.+... +. .-|.+ .++.. ..+..+..+.+.+.
T Consensus 176 ~~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eTG~~k~y~~--NiT~~~~~em~~ra~~~~e~ 253 (468)
T PRK04208 176 KNYGRVVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAETGERKGHYL--NVTAPTMEEMYKRAEFAKEL 253 (468)
T ss_pred HHHHHHHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhCCcceEEE--ecCCCCHHHHHHHHHHHHHh
Confidence 445667788899999888764311111 111233333222 222211 11 11222 23333 34556666677778
Q ss_pred CCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Q 015110 189 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (413)
Q Consensus 189 G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~e~ 233 (413)
|+..+-+-... .....++.+.+.+...+++++.|...
T Consensus 254 G~~~~mv~~~~--------~G~~~l~~l~~~~~~~~l~IhaHrA~ 290 (468)
T PRK04208 254 GSPIVMIDVVT--------AGWTALQSLREWCRDNGLALHAHRAM 290 (468)
T ss_pred CCCEEEEeccc--------cccHHHHHHHHhhhcCCcEEEecCCc
Confidence 88766442211 12234677777777789999999643
No 375
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=20.34 E-value=7.8e+02 Score=23.70 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEec
Q 015110 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231 (413)
Q Consensus 179 ~~~l~~l~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 231 (413)
.+.+++..+.|+..+-+.. + ..+....+.+.++++..++..--+.+|+
T Consensus 85 ~~~a~~~~~~G~~~v~l~~---G--~~p~~~~~~~~e~i~~Ik~~~p~i~i~~ 132 (351)
T TIGR03700 85 VARVKEAYAPGATEVHIVG---G--LHPNLPFEWYLDMIRTLKEAYPDLHVKA 132 (351)
T ss_pred HHHHHHHHHCCCcEEEEec---C--CCCCCCHHHHHHHHHHHHHHCCCceEEe
Confidence 3444444556665554321 1 1223455677777777776643355554
No 376
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=20.13 E-value=1.2e+02 Score=27.45 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=24.7
Q ss_pred eeecccccCCCCCCCccchHHHHHHHHhCCceEEEeC
Q 015110 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDM 136 (413)
Q Consensus 100 lID~H~H~~~~~~~~~e~~~~~~~~al~~GvTTv~d~ 136 (413)
++|.|+|.... ....+....+.|.+-|.+.+.-.
T Consensus 3 ~~DlHvHt~~d---~~~~~~e~i~~A~~~Gl~~i~it 36 (237)
T PRK00912 3 FYDLNVHAVPD---GYDTVLRLISEASHLGYSGIALS 36 (237)
T ss_pred ceEeccCCCCC---CcchHHHHHHHHHHCCCCEEEEe
Confidence 78999998421 23356677888999999988643
Done!