RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015111
(413 letters)
>1dcu_A Fructose-1,6-bisphosphatase; chloroplast, photosynthesis, redox
regulation, thioredoxin, allostery, hydrolase; 2.20A
{Pisum sativum} SCOP: e.7.1.1 PDB: 1d9q_A 1dbz_A 1spi_A
Length = 357
Score = 542 bits (1399), Expect = 0.0
Identities = 314/358 (87%), Positives = 333/358 (93%), Gaps = 4/358 (1%)
Query: 59 MAVGTTSEVATKKRSSYEIETLTNWLLKQEQSGVIDAELTIVLSSISTACKQIASLVQRA 118
MAV + TKKRS YEI TLT+WLL+QEQ G+IDAELTIVLSSIS ACKQIASLVQRA
Sbjct: 1 MAVKEATS-ETKKRSGYEIITLTSWLLQQEQKGIIDAELTIVLSSISMACKQIASLVQRA 59
Query: 119 GISNLTGIQGAVNVQGEDQKKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSG 178
ISNLTG QGAVN+QGEDQKKLDV+SNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSG
Sbjct: 60 NISNLTGTQGAVNIQGEDQKKLDVISNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSG 119
Query: 179 NYIVVFDPLDGSSNIDAAVSTGSIFGIYSPNDECLADIGDDP---TLGNTELRCVVNVCQ 235
NYIVVFDPLDGSSN+DAAVSTGSIFGIYSPNDECL D GDD TLG E RC+VNVCQ
Sbjct: 120 NYIVVFDPLDGSSNLDAAVSTGSIFGIYSPNDECLPDFGDDSDDNTLGTEEQRCIVNVCQ 179
Query: 236 PGSNLLAAGYCMYSSSVIFVITLGNGVFAFTLDPMYGEFVLTQENIQIPKTGKIYAFNEG 295
PGSNLLAAGYCMYSSSVIFV+T+G GVF FTLDP+YGEFVLTQEN+QIPK+GKIY+FNEG
Sbjct: 180 PGSNLLAAGYCMYSSSVIFVLTIGKGVFVFTLDPLYGEFVLTQENLQIPKSGKIYSFNEG 239
Query: 296 NYQLWDDKLKKYIDDLKDPGPSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGK 355
NY+LWD+ LKKYIDDLK+PGPSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGK
Sbjct: 240 NYKLWDENLKKYIDDLKEPGPSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGK 299
Query: 356 LRLLYECAPMSFIVEQAGGKGSDGHQRVLDIQPTEIHQRIPLYIGSQEEVEKLEKYLA 413
LRLLYECAPMSFIVEQAGGKGSDGHQRVLDIQPTEIHQR+PLYIGS EEVEK+EKYLA
Sbjct: 300 LRLLYECAPMSFIVEQAGGKGSDGHQRVLDIQPTEIHQRVPLYIGSTEEVEKVEKYLA 357
>2fhy_A Fructose-1,6-bisphosphatase 1; allosteric inhibitors human fbpase,
benzoxazole, intersubunit allosteric inhibition of human
fpbase, hydrolase; HET: A37; 2.95A {Homo sapiens}
Length = 374
Score = 527 bits (1360), Expect = 0.0
Identities = 154/352 (43%), Positives = 220/352 (62%), Gaps = 14/352 (3%)
Query: 62 GTTSEVATKKRSSYEIETLTNWLLKQEQSGVIDAELTIVLSSISTACKQIASLVQRAGIS 121
+A + ++ TLT +++++ + ELT +L+S+ TA K I+S V++AGI+
Sbjct: 32 DHPFTMADQAPFDTDVNTLTRFVMEEGRKARGTGELTQLLNSLCTAVKAISSAVRKAGIA 91
Query: 122 NLTGIQGAVNVQGEDQKKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYI 181
+L GI G+ NV G+ KKLDV+SN++ N L+SS T ++ SEE+ + VE G Y+
Sbjct: 92 HLYGIAGSTNVTGDQVKKLDVLSNDLVMNMLKSSFATCVLVSEEDKHAIIVEPEKRGKYV 151
Query: 182 VVFDPLDGSSNIDAAVSTGSIFGIYSPNDECLADIGDDPTLGNTELRCVVNVCQPGSNLL 241
V FDPLDGSSNID VS G+IFGIY D QPG NL+
Sbjct: 152 VCFDPLDGSSNIDCLVSVGTIFGIYRKKSTDEPSEKD--------------ALQPGRNLV 197
Query: 242 AAGYCMYSSSVIFVITLGNGVFAFTLDPMYGEFVLTQENIQIPKTGKIYAFNEGNYQLWD 301
AAGY +Y S+ + V+ + GV F LDP GEF+L ++++I K GKIY+ NEG + +D
Sbjct: 198 AAGYALYGSATMLVLAMDCGVNCFMLDPAIGEFILVDKDVKIKKKGKIYSLNEGYAKDFD 257
Query: 302 DKLKKYIDDLKDPGPSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYE 361
+ +YI K P + PY ARY+GS+V D HRTL+YGGI+ YP +KKS NGKLRLLYE
Sbjct: 258 PAVTEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVYGGIFLYPANKKSPNGKLRLLYE 317
Query: 362 CAPMSFIVEQAGGKGSDGHQRVLDIQPTEIHQRIPLYIGSQEEVEKLEKYLA 413
C PM++++E+AGG + G + VLD+ PT+IHQR P+ +GS ++V + K
Sbjct: 318 CNPMAYVMEKAGGMATTGKEAVLDVIPTDIHQRAPVILGSPDDVLEFLKVYE 369
>1nuw_A Fructose-1,6-bisphosphatase; allosteric enzymes, gluconeogenesis,
hydrola; HET: F6P; 1.30A {Sus scrofa} SCOP: e.7.1.1 PDB:
1eyi_A* 1eyj_A* 1cnq_A* 1eyk_A* 1nux_A* 1nuy_A* 1nuz_A*
1nv0_A* 1nv1_A* 1nv2_A* 1nv3_A* 1nv4_A* 1nv5_A* 1nv6_A*
1nv7_A* 1q9d_A* 2qvu_A* 2qvv_A* 1fj6_A* 1fj9_A* ...
Length = 337
Score = 523 bits (1349), Expect = 0.0
Identities = 154/338 (45%), Positives = 216/338 (63%), Gaps = 14/338 (4%)
Query: 76 EIETLTNWLLKQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGE 135
I TLT +++++ + E+T +L+S+ TA K I++ V++AGI++L GI G+ NV G+
Sbjct: 9 NIVTLTRFVMEEGRKARGTGEMTQLLNSLCTAVKAISTAVRKAGIAHLYGIAGSTNVTGD 68
Query: 136 DQKKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDA 195
KKLDV+SN++ N L+SS T ++ SEE+ + VE G Y+V FDPLDGSSNID
Sbjct: 69 QVKKLDVLSNDLVINVLKSSFATCVLVSEEDKNAIIVEPEKRGKYVVCFDPLDGSSNIDC 128
Query: 196 AVSTGSIFGIYSPNDECLADIGDDPTLGNTELRCVVNVCQPGSNLLAAGYCMYSSSVIFV 255
VS G+IFGIY N D QPG NL+AAGY +Y S+ + V
Sbjct: 129 LVSIGTIFGIYRKNSTDEPSEKD--------------ALQPGRNLVAAGYALYGSATMLV 174
Query: 256 ITLGNGVFAFTLDPMYGEFVLTQENIQIPKTGKIYAFNEGNYQLWDDKLKKYIDDLKDPG 315
+ + NGV F LDP GEF+L +++I K G IY+ NEG + +D + +YI K P
Sbjct: 175 LAMVNGVNCFMLDPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPAITEYIQRKKFPP 234
Query: 316 PSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGK 375
+ PY ARY+GS+V D HRTL+YGGI+ YP +KKS GKLRLLYEC PM++++E+AGG
Sbjct: 235 DNSAPYGARYVGSMVADVHRTLVYGGIFMYPANKKSPKGKLRLLYECNPMAYVMEKAGGL 294
Query: 376 GSDGHQRVLDIQPTEIHQRIPLYIGSQEEVEKLEKYLA 413
+ G + VLDI PT+IHQR P+ +GS E+V +L +
Sbjct: 295 ATTGKEAVLDIVPTDIHQRAPIILGSPEDVTELLEIYQ 332
>2gq1_A Fructose-1,6-bisphosphatase; allosteric activator site, quaternary
conformation, hydrolas; 1.45A {Escherichia coli} PDB:
2owz_A* 2ox3_A* 2q8m_A* 2qvr_A*
Length = 332
Score = 519 bits (1340), Expect = 0.0
Identities = 149/339 (43%), Positives = 204/339 (60%), Gaps = 14/339 (4%)
Query: 77 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGE 135
++TL +++ KQ + ELT +LS+I K I + +AG+ ++ G GA NVQGE
Sbjct: 1 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGE 60
Query: 136 DQKKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDA 195
Q+KLD+ +NE L++ IASEEED V E Y+V+ DPLDGSSNID
Sbjct: 61 VQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDV 120
Query: 196 AVSTGSIFGIYSPNDECLADIGDDPTLGNTELRCVVNVCQPGSNLLAAGYCMYSSSVIFV 255
VS G+IF IY + ++ + QPG+ +AAGY +Y SS + V
Sbjct: 121 NVSVGTIFSIYRRVTPVGTPVTEE------------DFLQPGNKQVAAGYVVYGSSTMLV 168
Query: 256 ITLGNGVFAFTLDPMYGEFVLTQENIQIPKTGKIYAFNEGNYQLWDDKLKKYIDDLKDP- 314
T G GV AFT DP G F L QE ++ P+ GK Y+ NEGNY + + +KKYI ++
Sbjct: 169 YTTGCGVHAFTYDPSLGVFCLCQERMRFPEKGKTYSINEGNYIKFPNGVKKYIKFCQEED 228
Query: 315 GPSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGG 374
+ +PY++RYIGSLV DFHR LL GGIY YP +GKLRLLYEC PM+F+ EQAGG
Sbjct: 229 KSTNRPYTSRYIGSLVADFHRNLLKGGIYLYPSTASHPDGKLRLLYECNPMAFLAEQAGG 288
Query: 375 KGSDGHQRVLDIQPTEIHQRIPLYIGSQEEVEKLEKYLA 413
K SDG +R+LDI P +HQR ++G+ VE +E+++
Sbjct: 289 KASDGKERILDIIPETLHQRRSFFVGNDHMVEDVERFIR 327
>3uks_A Sedoheptulose-1,7 bisphosphatase, putative; structural genomics,
center for structural genomics of infec diseases, csgid;
1.85A {Toxoplasma gondii}
Length = 347
Score = 465 bits (1198), Expect = e-164
Identities = 87/354 (24%), Positives = 154/354 (43%), Gaps = 35/354 (9%)
Query: 69 TKKRSSYEIETLTNWLLKQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQG 128
S + +L L +Q D LT ++ +I C +IAS +Q + G
Sbjct: 16 QGMESPSALPSLDQLLKEQG----ADQTLTDLILAILDRCGKIASALQGTSV----DKVG 67
Query: 129 AVNVQGEDQKKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLD 188
+VN G++Q +DV++ + + +SS + + A E+ E +G +I+ +DPLD
Sbjct: 68 SVNEFGDEQLTVDVIAENLLRSWAQSSEGSAVRAVCSEEDIHLQECHKNGEFILCWDPLD 127
Query: 189 GSSNIDAAVSTGSIFGIYSPNDECLADIGDDPTLGNTELRCVVNVCQPGSNLLAAGYCMY 248
GSS ID + GSI I+ + G D + + G +A+ +Y
Sbjct: 128 GSSIIDCNWAVGSIVSIWRIGHHGVQWQGADTLIQ-----------KTGRQQVASLIVVY 176
Query: 249 SSSVIFVITLGNGVFA-----FTLDPM---YGEFVLTQENIQIPKTGKIYAFNEGNYQLW 300
V+ + LD G+F+ + I P+ KI++
Sbjct: 177 GPRTTGVVAVNVDAGGIVKEGTALDLEMKDNGKFICRGKPIIKPQ-AKIFSPANLRAAQD 235
Query: 301 DDKLKKYIDDLKDPGPSGKPYSARYIGSLVGDFHRTLL-YGGIYGYPRDKKSKNGKLRLL 359
K+ I+ K Y+ RY G LV D ++ + G++ P K + KLR+
Sbjct: 236 LPAYKQLIEFWM-----EKRYTLRYTGGLVPDVYQIFVKQQGVFCNPASKAAP-AKLRMC 289
Query: 360 YECAPMSFIVEQAGGKGSDGHQRVLDIQPTEIHQRIPLYIGSQEEVEKLEKYLA 413
+E ++ +VE AGG+ S+G + +LD+ + R L GS +E++++E+ A
Sbjct: 290 FEVLAIALVVEAAGGRTSNGQKSLLDVAIEHMDHRSALCCGSADEIKRMEETFA 343
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 5e-07
Identities = 60/412 (14%), Positives = 122/412 (29%), Gaps = 134/412 (32%)
Query: 13 LFSSSHSF-----SRLSPY-QICVFDSKALVSSCPSN--VLKRRHVGVA-AGVRCMAVGT 63
L++ + F SRL PY ++ +AL+ P+ ++ GV +G +A+
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKL----RQALLELRPAKNVLI---D-GVLGSGKTWVALDV 170
Query: 64 TSEVATKKRSSYEIETLTNWL-LKQEQSGVIDAELTIVLSSISTACKQIA-SLVQRA-GI 120
+ + ++I WL LK S + +L + QI + R+
Sbjct: 171 CLSYKVQCKMDFKI----FWLNLKNCNS---PETVLEMLQKL---LYQIDPNWTSRSDHS 220
Query: 121 SNLTGIQGAVNVQGEDQKKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNY 180
SN+ + + + ++ ++ + NCL ++ +V +
Sbjct: 221 SNIK-----LRIHSIQAELRRLLKSKPYENCL-------LVL---LNV-------QNAK- 257
Query: 181 IVVFDPLDGSSNI-----DAAVSTGSIFGIYSPNDECLADIGDDPTLGNTE--LRCVVN- 232
++ + S I V+ + L T + L ++
Sbjct: 258 --AWNAFNLSCKILLTTRFKQVTD--FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 233 --------VCQPGSNLLAAGYCMYSSSVI-FVITLGN-------------GVFAFTLDP- 269
V + + + + S+ + T N L+P
Sbjct: 314 RPQDLPREVLT-TNPRRLS---IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 270 ----MYGEFVLTQENIQIP-KTGKIYAFNEGNYQLWDD-----------KLKKYIDDLKD 313
M+ + + IP + +W D KL KY K
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSL---------IWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 314 PGPSGKPYSARYIGSLVGDF----------HRTLL--YGGIYGYPRDKKSKN 353
P K + I S+ + HR+++ Y + D
Sbjct: 421 P----KEST-ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Score = 42.1 bits (98), Expect = 3e-04
Identities = 54/376 (14%), Positives = 108/376 (28%), Gaps = 119/376 (31%)
Query: 93 IDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQG-EDQKKLDVVSNEVFSNC 151
+D E K I S+ + A + N + + +D K ++S E +
Sbjct: 7 MDFET----GEHQYQYKDILSVFEDAFVDNF-------DCKDVQDMPK-SILSKEEIDHI 54
Query: 152 LRSSGRTG--------IIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIF 203
+ S +++ +EE V VEE NY + P+ + ++
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR---- 110
Query: 204 GIYSPNDECLADIGDDPTL---GN-------TELRCVVNVCQPGSNL------------L 241
+Y E + +D + N +LR + +P N+ +
Sbjct: 111 -MYI---EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 242 AAGYCMYSSSV-------IFVITLGNGV-----------FAFTLDPMYGEFVLTQENIQI 283
A C+ S V IF + L N + +DP + NI++
Sbjct: 167 ALDVCL-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 284 PKTGKIYAFNEGNYQLWD-DKLKKY------IDDLKDPGPSGKPYSARYIGSLVGDFH-R 335
+ +L K K Y + ++++ + + + +
Sbjct: 226 R-------IHSIQAELRRLLKSKPYENCLLVLLNVQNA---------KAWNAF--NLSCK 267
Query: 336 TL-----------LYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRVL 384
L L + L S +++ + D L
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMT----LTPDEVKSLLLKYLDCRPQD-----L 318
Query: 385 DIQPTEIHQRIPLYIG 400
P E+ P +
Sbjct: 319 ---PREVLTTNPRRLS 331
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 6e-06
Identities = 70/324 (21%), Positives = 104/324 (32%), Gaps = 110/324 (33%)
Query: 1 MVAAAATASSQLLFSSSHSFSRLSPYQICVFDSKALVSSCPSNVLKRRHVGVAAGVRC-M 59
+V A A A + S SF KA+ V GVRC
Sbjct: 277 LVTAVAIAET----DSWESFFVSV--------RKAI------------TVLFFIGVRCYE 312
Query: 60 AVGTTSEVATKKRSSYEI-ETLTNWLLKQEQSGVIDAELTIVLSSISTACKQIASLVQRA 118
A TS + S E E + + +L + + V ++ + + ++
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPML-----SISNLTQEQVQDYVNKTNSHLPA-GKQV 366
Query: 119 GIS--N------LTG-----------IQGAVNVQGEDQ-------KKLDVVSNEVF---- 148
IS N ++G ++ A G DQ +KL SN F
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL-KFSNR-FLPVA 424
Query: 149 ----SNCLRSSGRTGIIASE--EEDVPVAVEESYSGNY--IVVFDPLDGSSNIDAAVSTG 200
S+ L AS+ +D+ S++ I V+D DGS D V +G
Sbjct: 425 SPFHSHLLVP-------ASDLINKDLV-KNNVSFNAKDIQIPVYDTFDGS---DLRVLSG 473
Query: 201 SIFGIYSPNDECLAD-IGDDP----TLGNTELRCVVNVCQPGSNLLAAGYCMYSSSVIFV 255
SI E + D I P T + ++ PG A+G +
Sbjct: 474 SI-------SERIVDCIIRLPVKWETTTQFKATHIL-DFGPGG---ASGL----GVLTHR 518
Query: 256 ITLGNGV---FAFTLDP----MYG 272
G GV A TLD YG
Sbjct: 519 NKDGTGVRVIVAGTLDINPDDDYG 542
Score = 37.3 bits (86), Expect = 0.010
Identities = 13/105 (12%), Positives = 30/105 (28%), Gaps = 37/105 (35%)
Query: 264 AFTLDPMYGEFVLTQENIQ----IPKTGKIYAFNEGNYQLWDDKLKKYIDDLKDPGPSGK 319
A++ P L+ +++ +P A QL + K + + +
Sbjct: 3 AYSTRP----LTLSHGSLEHVLLVPTASFFIAS-----QLQEQFNKILPEPTEGFAADDE 53
Query: 320 PYS-----ARYIG-------------------SLVGDFHRTLLYG 340
P + +++G + +F L G
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG 98
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.13
Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 32/107 (29%)
Query: 67 VATKKRSSYEIETLTNWLLKQEQSGVI---DAELTIVLSSISTACKQIASLVQRAG--IS 121
+A R + E E++ W ++EQ + DA + ++A +
Sbjct: 74 IAQADRLTQEPESIRKW--REEQRKRLQELDAA----------SKVMEQEWREKAKKDLE 121
Query: 122 NLTGIQGAVNVQGEDQKKLDVVSNEVFSNCLRSSGRTGIIASEEEDV 168
Q + Q E K + ++++ F + D+
Sbjct: 122 EWNQRQ---SEQVEKNKINNRIADKAF------------YQQPDADI 153
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus
cuniculus} SCOP: b.66.1.1
Length = 219
Score = 30.4 bits (68), Expect = 0.74
Identities = 9/62 (14%), Positives = 18/62 (29%)
Query: 284 PKTGKIYAFNEGNYQLWDDKLKKYIDDLKDPGPSGKPYSARYIGSLVGDFHRTLLYGGIY 343
P + +++ D K + P P K A + +G + +Y
Sbjct: 124 PGSSRLHIMAGRRLWWLDLKSGAQATWTELPWPHEKVDGALCMEKPLGPNSCSTSGPNLY 183
Query: 344 GY 345
Sbjct: 184 LI 185
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport,
iron metabolism, binding protein; HET: HEM; 2.30A
{Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB:
1qjs_A*
Length = 460
Score = 30.5 bits (68), Expect = 1.0
Identities = 9/60 (15%), Positives = 18/60 (30%)
Query: 284 PKTGKIYAFNEGNYQLWDDKLKKYIDDLKDPGPSGKPYSARYIGSLVGDFHRTLLYGGIY 343
P + +++ D K + P P K A + +G + +Y
Sbjct: 365 PGSSRLHIMAGRRLWWLDLKSGAQATWTELPWPHEKVDGALCMEKPLGPNSCSTSGPNLY 424
>3b8b_A CYSQ, sulfite synthesis pathway protein;
3'-phosphoadenosine-5'-phosphosulfate (PAPS)
3'-phosphatase, structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 292
Score = 28.4 bits (64), Expect = 3.9
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 141 DVVSNEVFSNCLRSSGRTGI-IASEEEDVPVAVEESYSGNYIVVFDPLDG 189
D ++E L T + SEE +V DPLDG
Sbjct: 64 DRKAHEAIVAILN---ETPFPVLSEEGKHMDYAVRRGWDTLWIV-DPLDG 109
>1ei5_A D-aminopeptidase, DAP; penicillin binding protein, alpha/beta
domain, beta barrel domain, hydrolase; 1.90A
{Ochrobactrum anthropi} SCOP: b.61.3.1 b.61.3.1 e.3.1.1
Length = 520
Score = 27.9 bits (62), Expect = 6.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 299 LWDDKLKKYIDDLKDPGP 316
L DD L+ Y+D +D P
Sbjct: 81 LLDDALEAYLDKFEDERP 98
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.386
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,271,706
Number of extensions: 388335
Number of successful extensions: 770
Number of sequences better than 10.0: 1
Number of HSP's gapped: 753
Number of HSP's successfully gapped: 19
Length of query: 413
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 317
Effective length of database: 4,021,377
Effective search space: 1274776509
Effective search space used: 1274776509
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.2 bits)