BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015112
(413 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OTK|A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
pdb|3OTK|B Chain B, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
pdb|3OTK|C Chain C, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
pdb|3OTK|D Chain D, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
Length = 391
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 122/286 (42%), Gaps = 42/286 (14%)
Query: 83 LEKLWRTLQALYHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVT 142
+E L R L+A+Y P+N Y +H+D +A EE A + + S NV+++++ V
Sbjct: 96 IEMLDRLLRAIYMPQNFYCIHVDRKA--EESFLAAVQ----GIASCFDNVFVASQLESVV 149
Query: 143 YRGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFSGLSRKLNFIEHT 202
Y T V L+ L + + +W + INLS D+P+ T +++ S N +E
Sbjct: 150 YASWTRVKADLNCMKDLYRMNANWKYLINLSGMDFPIKTNLEIVRKLK-CSTGENNLETE 208
Query: 203 SHLGWKEEKRAMPLMVDPGLYMLTKSDIFWVTPRRTLPTAFKLFTGSAWMVLSRSFVEYC 262
KEE+ V G LT + I P P LF+GSA+ V++R +V Y
Sbjct: 209 KMPPNKEERWKKRYAVVDG--KLTNTGIVKAPP----PLKTPLFSGSAYFVVTREYVGYV 262
Query: 263 IWGWDNLPRTLLMYYTNFVSSPESYFQTVICNVPEF---VPTVVNHDL-------HYISW 312
+ +N LM + SP+ + I +PE P+ +DL ++ W
Sbjct: 263 L---ENENIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKW 319
Query: 313 D-----------NPPGQHPHILSL-----NDTSEMISSSAAFARKF 342
PP H+ S+ D S M+ FA KF
Sbjct: 320 QYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKF 365
>pdb|2GAK|A Chain A, X-ray Crystal Structure Of Murine Leukocyte-type Core 2
B1,6-n- Acetylglucosaminyltransferase (c2gnt-l)
pdb|2GAK|B Chain B, X-ray Crystal Structure Of Murine Leukocyte-type Core 2
B1,6-n- Acetylglucosaminyltransferase (c2gnt-l)
pdb|2GAM|A Chain A, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
pdb|2GAM|B Chain B, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
pdb|2GAM|C Chain C, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
pdb|2GAM|D Chain D, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
Length = 391
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 121/286 (42%), Gaps = 42/286 (14%)
Query: 83 LEKLWRTLQALYHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVT 142
+E L R L+A+Y P+N Y +H+D +A EE A + + S NV+++++ V
Sbjct: 96 IEMLDRLLRAIYMPQNFYCIHVDRKA--EESFLAAVQ----GIASCFDNVFVASQLESVV 149
Query: 143 YRGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFSGLSRKLNFIEHT 202
Y T V L+ L + + +W + INL D+P+ T +++ S N +E
Sbjct: 150 YASWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLK-CSTGENNLETE 208
Query: 203 SHLGWKEEKRAMPLMVDPGLYMLTKSDIFWVTPRRTLPTAFKLFTGSAWMVLSRSFVEYC 262
KEE+ V G LT + I P P LF+GSA+ V++R +V Y
Sbjct: 209 KMPPNKEERWKKRYAVVDG--KLTNTGIVKAPP----PLKTPLFSGSAYFVVTREYVGYV 262
Query: 263 IWGWDNLPRTLLMYYTNFVSSPESYFQTVICNVPEF---VPTVVNHDL-------HYISW 312
+ +N LM + SP+ + I +PE P+ +DL ++ W
Sbjct: 263 L---ENENIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKW 319
Query: 313 D-----------NPPGQHPHILSL-----NDTSEMISSSAAFARKF 342
PP H+ S+ D S M+ FA KF
Sbjct: 320 QYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKF 365
>pdb|1EG3|A Chain A, Structure Of A Dystrophin Ww Domain Fragment In Complex
With A Beta-Dystroglycan Peptide
pdb|1EG4|A Chain A, Structure Of A Dystrophin Ww Domain Fragment In Complex
With A Beta-Dystroglycan Peptide
Length = 261
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 296 PEFVPTVVNHDLHYISWDNPPGQHPHILSLNDTSEMISSSAAFARKFR--QNALVLD 350
P VP +NH+ WD+P + SL D + + S+ A K R Q AL LD
Sbjct: 22 PNKVPYYINHETQTTCWDHPKMTELY-QSLADLNNVRFSAYRTAMKLRRLQKALCLD 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,013,101
Number of Sequences: 62578
Number of extensions: 546736
Number of successful extensions: 1046
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1040
Number of HSP's gapped (non-prelim): 6
length of query: 413
length of database: 14,973,337
effective HSP length: 101
effective length of query: 312
effective length of database: 8,652,959
effective search space: 2699723208
effective search space used: 2699723208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)