Query 015112
Match_columns 413
No_of_seqs 231 out of 877
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:13:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 1E-119 2E-124 920.0 38.3 413 1-413 6-421 (421)
2 KOG0799 Branching enzyme [Carb 100.0 8.5E-66 1.8E-70 530.7 23.0 331 65-411 97-439 (439)
3 PF02485 Branch: Core-2/I-Bran 100.0 3.7E-53 7.9E-58 405.3 17.8 238 72-332 1-244 (244)
4 TIGR03469 HonB hopene-associat 94.0 3.9 8.4E-05 41.9 17.6 118 67-190 37-159 (384)
5 PRK11204 N-glycosyltransferase 90.7 9 0.00019 39.3 15.4 105 67-189 51-159 (420)
6 TIGR03111 glyc2_xrt_Gpos1 puta 89.4 13 0.00029 38.8 15.6 106 67-189 46-156 (439)
7 TIGR03472 HpnI hopanoid biosyn 87.5 18 0.00039 36.9 14.8 105 69-190 40-149 (373)
8 cd06439 CESA_like_1 CESA_like_ 86.8 18 0.00038 33.8 13.3 105 65-191 24-133 (251)
9 cd02525 Succinoglycan_BP_ExoA 86.2 12 0.00026 34.5 11.7 99 71-189 1-103 (249)
10 PRK14716 bacteriophage N4 adso 84.0 14 0.0003 39.8 12.3 102 68-180 64-173 (504)
11 cd06421 CESA_CelA_like CESA_Ce 78.3 26 0.00057 31.9 10.8 103 70-191 1-108 (234)
12 PF13641 Glyco_tranf_2_3: Glyc 77.1 6.4 0.00014 36.2 6.2 114 70-200 1-120 (228)
13 COG1216 Predicted glycosyltran 75.5 17 0.00038 35.7 9.2 91 69-176 2-94 (305)
14 PRK14583 hmsR N-glycosyltransf 74.8 48 0.001 34.6 12.7 94 68-179 73-169 (444)
15 cd06437 CESA_CaSu_A2 Cellulose 74.5 20 0.00044 33.2 8.9 103 70-187 1-107 (232)
16 PRK07132 DNA polymerase III su 72.2 26 0.00057 35.0 9.5 96 68-174 15-128 (299)
17 cd04184 GT2_RfbC_Mx_like Myxoc 71.2 72 0.0016 28.3 11.5 104 70-189 1-108 (202)
18 PTZ00260 dolichyl-phosphate be 70.9 76 0.0016 32.0 12.6 112 66-190 66-188 (333)
19 PF08660 Alg14: Oligosaccharid 70.3 44 0.00095 30.5 9.8 124 75-203 3-131 (170)
20 PRK10063 putative glycosyl tra 70.3 1E+02 0.0022 29.4 13.0 101 70-189 1-106 (248)
21 PF07521 RMMBL: RNA-metabolisi 69.4 3 6.5E-05 29.3 1.5 29 76-106 14-42 (43)
22 cd04187 DPM1_like_bac Bacteria 69.0 54 0.0012 28.8 10.1 96 75-190 2-103 (181)
23 TIGR01556 rhamnosyltran L-rham 68.4 21 0.00045 34.4 7.7 85 79-179 3-87 (281)
24 PF00535 Glycos_transf_2: Glyc 67.9 27 0.00059 29.3 7.6 99 75-191 3-105 (169)
25 cd02526 GT2_RfbF_like RfbF is 67.2 44 0.00095 30.7 9.4 95 75-188 2-96 (237)
26 cd02520 Glucosylceramide_synth 66.7 68 0.0015 28.8 10.4 105 70-189 1-108 (196)
27 cd06434 GT2_HAS Hyaluronan syn 66.7 74 0.0016 29.0 10.8 92 72-181 2-93 (235)
28 TIGR03030 CelA cellulose synth 65.4 1.7E+02 0.0037 32.9 15.1 116 67-199 128-262 (713)
29 cd04179 DPM_DPG-synthase_like 65.0 61 0.0013 28.3 9.5 107 75-200 2-113 (185)
30 PRK11234 nfrB bacteriophage N4 64.8 43 0.00094 37.7 10.2 122 66-201 59-188 (727)
31 cd02511 Beta4Glucosyltransfera 63.8 76 0.0016 29.5 10.4 96 71-190 1-97 (229)
32 PRK10073 putative glycosyl tra 57.4 95 0.0021 31.1 10.4 93 69-179 5-99 (328)
33 cd04186 GT_2_like_c Subfamily 56.9 1.1E+02 0.0023 25.8 9.4 92 75-189 2-96 (166)
34 PRK07276 DNA polymerase III su 52.8 91 0.002 31.1 9.2 26 68-93 21-46 (290)
35 PRK05454 glucosyltransferase M 51.0 4E+02 0.0086 30.0 14.7 125 65-200 119-255 (691)
36 cd04192 GT_2_like_e Subfamily 49.5 2E+02 0.0042 25.8 10.6 99 75-190 2-105 (229)
37 PRK05917 DNA polymerase III su 48.9 94 0.002 31.1 8.6 14 68-81 16-29 (290)
38 PLN02726 dolichyl-phosphate be 47.5 2.4E+02 0.0052 26.3 12.9 107 67-190 6-116 (243)
39 PF07747 MTH865: MTH865-like f 45.1 12 0.00026 29.9 1.3 22 172-196 11-32 (75)
40 cd02510 pp-GalNAc-T pp-GalNAc- 44.9 2E+02 0.0043 27.9 10.2 99 74-189 2-105 (299)
41 PRK15489 nfrB bacteriophage N4 44.4 1.5E+02 0.0032 33.5 10.0 119 68-200 69-195 (703)
42 cd06423 CESA_like CESA_like is 44.2 1.8E+02 0.004 24.0 8.8 95 75-188 2-99 (180)
43 cd06427 CESA_like_2 CESA_like_ 43.6 2E+02 0.0044 26.6 9.8 104 70-189 1-109 (241)
44 cd04185 GT_2_like_b Subfamily 43.6 2.1E+02 0.0046 25.4 9.5 89 75-179 2-93 (202)
45 cd00761 Glyco_tranf_GTA_type G 42.0 1.8E+02 0.0039 23.3 9.5 90 75-181 2-93 (156)
46 cd04196 GT_2_like_d Subfamily 41.2 2.5E+02 0.0055 24.8 9.8 99 74-190 2-102 (214)
47 PRK05818 DNA polymerase III su 41.0 1.4E+02 0.003 29.4 8.2 33 143-175 95-127 (261)
48 cd06913 beta3GnTL1_like Beta 1 40.3 2.3E+02 0.005 25.7 9.4 104 75-189 2-109 (219)
49 PRK06581 DNA polymerase III su 38.5 2.6E+02 0.0057 27.6 9.6 99 68-175 12-128 (263)
50 cd06442 DPM1_like DPM1_like re 37.1 3.1E+02 0.0067 24.6 10.1 96 75-189 2-100 (224)
51 PRK08058 DNA polymerase III su 36.4 3E+02 0.0064 27.7 10.1 98 68-174 25-148 (329)
52 COG3215 PilZ Tfp pilus assembl 35.7 78 0.0017 26.9 4.7 81 321-403 12-105 (117)
53 cd04195 GT2_AmsE_like GT2_AmsE 35.2 3.1E+02 0.0068 24.1 10.8 90 74-180 2-95 (201)
54 COG4746 Uncharacterized protei 34.0 23 0.0005 28.3 1.3 17 173-189 17-33 (80)
55 PF11051 Mannosyl_trans3: Mann 32.8 1.5E+02 0.0033 29.0 7.1 94 74-185 4-110 (271)
56 KOG3339 Predicted glycosyltran 32.5 4.2E+02 0.0091 25.1 9.4 113 72-190 40-158 (211)
57 PF12273 RCR: Chitin synthesis 31.7 40 0.00086 29.3 2.6 18 4-21 1-18 (130)
58 PRK10714 undecaprenyl phosphat 31.4 5.4E+02 0.012 25.7 12.8 110 68-195 4-118 (325)
59 PRK07993 DNA polymerase III su 30.1 3.4E+02 0.0074 27.5 9.4 99 68-175 21-147 (334)
60 PRK07414 cob(I)yrinic acid a,c 29.6 4.6E+02 0.01 24.3 11.1 106 83-199 36-152 (178)
61 PF02572 CobA_CobO_BtuR: ATP:c 29.6 3.7E+02 0.008 24.7 8.7 106 83-199 18-133 (172)
62 cd02514 GT13_GLCNAC-TI GT13_GL 29.6 4E+02 0.0088 27.1 9.8 98 72-181 2-113 (334)
63 PRK05564 DNA polymerase III su 28.7 5E+02 0.011 25.6 10.2 99 68-174 23-131 (313)
64 cd04188 DPG_synthase DPG_synth 28.6 1.9E+02 0.0041 26.0 6.8 97 75-190 2-105 (211)
65 cd06438 EpsO_like EpsO protein 28.2 4.1E+02 0.0089 23.3 12.4 98 75-189 2-103 (183)
66 cd02537 GT8_Glycogenin Glycoge 27.9 5.2E+02 0.011 24.4 9.9 108 72-187 1-111 (240)
67 PRK11498 bcsA cellulose syntha 26.7 1E+03 0.022 27.6 13.2 112 67-199 257-373 (852)
68 COG1215 Glycosyltransferases, 26.7 6.7E+02 0.015 25.3 12.8 106 69-190 53-163 (439)
69 cd06435 CESA_NdvC_like NdvC_li 25.6 5.1E+02 0.011 23.5 10.2 103 74-191 2-108 (236)
70 PRK06871 DNA polymerase III su 25.3 2.2E+02 0.0048 28.8 7.0 81 87-175 65-146 (325)
71 cd06420 GT2_Chondriotin_Pol_N 24.9 4.5E+02 0.0097 22.6 11.6 98 75-190 2-102 (182)
72 COG3618 Predicted metal-depend 23.3 3.8E+02 0.0081 26.8 7.9 92 82-184 145-244 (279)
73 PRK08309 short chain dehydroge 22.2 6E+02 0.013 23.1 9.6 83 82-175 32-114 (177)
74 COG2878 Predicted NADH:ubiquin 22.1 51 0.0011 30.8 1.5 58 339-403 26-90 (198)
75 cd06433 GT_2_WfgS_like WfgS an 20.1 5.6E+02 0.012 22.0 10.1 87 74-181 2-91 (202)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=1.1e-119 Score=920.04 Aligned_cols=413 Identities=82% Similarity=1.370 Sum_probs=387.2
Q ss_pred CCccchhHHHHHHHHHHHHHHHHhhcccccccccccccccccCC--CCCCCCccccccccCCC-CCCCCCCCCcEEEEEE
Q 015112 1 MEKKWVFPLVISSLICVFLLATSFNMGLISSLHTINAIFSIFPS--SNHTAPNYAEMKVKQSE-PAPSGPKIPRFAYLVS 77 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~kiAYLI~ 77 (413)
|||||++|++++++++++|++++++||++++++++++.|.+++. .+++.+.|+|+++.+.| .++..++||||||||+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~AYLI~ 85 (421)
T PLN03183 6 VEKRWVFPLVITSLVCVFLLATSFNMGLVSSLRTINSIFSIFPLSRTNQTRLEFAESKVNQSPHPPPVQDKLPRFAYLVS 85 (421)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhcccCCCccccccccccccccccccccccccccccCCCCCCCCCCCCCCeEEEEEE
Confidence 68999999999999999998888777887666655555655542 46667779999987654 2234566999999999
Q ss_pred eeCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccHHHHHHHHHH
Q 015112 78 GSKGDLEKLWRTLQALYHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVANTLHACA 157 (413)
Q Consensus 78 ~hk~d~~~l~RLL~aLy~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~ 157 (413)
||+||.+|++|||++||||+|+||||+|+||+..++.+++..++.++++.+++||+|+++++.|+|||+|||+|||+||+
T Consensus 86 ~h~~d~~~l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~WGG~S~V~AtL~~m~ 165 (421)
T PLN03183 86 GSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTYRGPTMVANTLHACA 165 (421)
T ss_pred ecCCcHHHHHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeeccCChHHHHHHHHHHH
Confidence 99889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCceEEeccCCcccccchhHHHHHHhccCCCcceEEeecCCCCcceecccccccCCCccccccccceeeccCC
Q 015112 158 ILLKNSKDWDWFINLSASDYPLVTQDDLLYTFSGLSRKLNFIEHTSHLGWKEEKRAMPLMVDPGLYMLTKSDIFWVTPRR 237 (413)
Q Consensus 158 ~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f~~~~~~~nFIe~~~~~~wk~~~R~~~~i~dpgl~~~~k~~~~~~~~kR 237 (413)
.|++.+.+|||||||||+||||+||+||++.|+++|+|+|||++++..+|++.+|+++++++||+|..++++++|.+++|
T Consensus 166 ~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pgl~~~~ks~~~~~~~~R 245 (421)
T PLN03183 166 ILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYSTNKSDIYWVTPRR 245 (421)
T ss_pred HHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCceeecccchhhhhhhhc
Confidence 99998899999999999999999999988888889999999999988899999999999999999988888899999999
Q ss_pred CCCCCeeeeccceeeeecHHHHHHhhhccCCchHHHHHhhcCCCCCCchhHHHHHhcCCCCCCccccCceeEEecCCCCC
Q 015112 238 TLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPESYFQTVICNVPEFVPTVVNHDLHYISWDNPPG 317 (413)
Q Consensus 238 ~~p~~~~l~~GS~W~~LsR~fvey~l~~~d~lpr~ll~yf~~~~~pDE~yFqTvl~Ns~~f~~t~vn~~LRyi~W~~~~~ 317 (413)
.+|.++++|+||+|++|||+||+||+++|||+|++++|||+++++|||+|||||+||+++|+++++|+|+|||+|+++++
T Consensus 246 ~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t~vn~nLRyI~W~~~~~ 325 (421)
T PLN03183 246 SLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKTAVNHDLHYISWDNPPK 325 (421)
T ss_pred cCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhcccccccccCCceeEEecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCccChhhHHHHhcCCceEEeccCCCHHHHHHHHHHHhCCCCCCCCCCccccCCCCCCCCCCCCcccCCchhHHHHHH
Q 015112 318 QHPHILSLNDTSEMISSSAAFARKFRQNALVLDKIDKELLGRKNGSFTPGAWCSGDPHCSKVGDPNKIKPGPGAERLRRL 397 (413)
Q Consensus 318 ~~P~~l~~~D~~~l~~S~alFARKF~~d~~vLd~Id~~ll~r~~~~~~~g~w~~~~~~c~~~~~~~~~~~~~~~~~~~~~ 397 (413)
+||++|+.+|+++|++|+++|||||+.|++|||+||+++++|.+++++|||||.|.|||++|||+++|||||||+||++|
T Consensus 326 ~~P~~l~~~D~~~l~~S~~lFARKFd~d~~vl~~Id~~ll~r~~~~~~~g~wc~~~~~c~~~~~~~~~~p~~~~~~~~~~ 405 (421)
T PLN03183 326 QHPHTLSLNDTEKMIASGAAFARKFRRDDPVLDKIDKELLGRKNGSFTPGGWCSGKPKCSRVGDPAKIKPGPGAQRLKGL 405 (421)
T ss_pred CCCcccCHHHHHHHHhCCCccccCCCCChHHHHHHHHHHhCCCCCCccCCcccCCCCcccccCCcCccCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCCCCC
Q 015112 398 VARLTMEAKRGLNQCT 413 (413)
Q Consensus 398 ~~~~~~~~~~~~~~~~ 413 (413)
|++||++++||++||+
T Consensus 406 ~~~~~~~~~~~~~~c~ 421 (421)
T PLN03183 406 VSRLVLEAKLGQNQCK 421 (421)
T ss_pred HHHHhchhccccccCC
Confidence 9999999999999996
No 2
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.5e-66 Score=530.71 Aligned_cols=331 Identities=46% Similarity=0.723 Sum_probs=304.1
Q ss_pred CCCCCCcEEEEEEeeCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeec
Q 015112 65 SGPKIPRFAYLVSGSKGDLEKLWRTLQALYHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYR 144 (413)
Q Consensus 65 ~~~~~~kiAYLI~~hk~d~~~l~RLL~aLy~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wg 144 (413)
..+.+++.||++++..+|.++++|+|+|+|||+|.||||||++|++++|..++. +.+|++||+|++++..|+||
T Consensus 97 s~~~~~~~~a~~~~v~kd~~~verll~aiYhPqN~ycihvD~~s~~~fk~~~~~------L~~cf~NV~v~~k~~~v~~~ 170 (439)
T KOG0799|consen 97 SKELKPFPAAFLRVVYKDYEQVERLLQAIYHPQNVYCIHVDAKSPPEFRVAMQQ------LASCFPNVIVLPKRESVTYG 170 (439)
T ss_pred cccccccceEEEEeecccHHHHHHHHHHHhCCcCcceEEECCCCCHHHHHHHHH------HHhcCCceEEeccccceecC
Confidence 455666555555544449999999999999999999999999999999977764 56799999999999999999
Q ss_pred CccHHHHHHHHHHHHHhCCCCCceEEeccCCcccccchhHHHHHHhccCCCcceEEeecCCCCcceecccccccCCCccc
Q 015112 145 GPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFSGLSRKLNFIEHTSHLGWKEEKRAMPLMVDPGLYM 224 (413)
Q Consensus 145 g~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f~~~~~~~nFIe~~~~~~wk~~~R~~~~i~dpgl~~ 224 (413)
|+|+++|+|+||+.|++.+.+|||||||||+|||||||+||+++|+.+ +|.|||+++...+|++.++.++...+++ |+
T Consensus 171 G~s~l~a~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L-~g~N~i~~~~~~~~~~~~~~k~~~~~~~-~~ 248 (439)
T KOG0799|consen 171 GHSILAAHLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKIL-RGANFVEHTSEIGWKLNRKAKWDIIDLK-YF 248 (439)
T ss_pred CchhhHHHHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHc-CCcccccCcccccHHHhcccCCcccccc-hh
Confidence 999999999999999999889999999999999999999999999887 7999999999999999999998888988 67
Q ss_pred cccccceeeccCCCCCCCeeeeccceeeeecHHHHHHhhhccCCchHHHHHhhcCCCCCCchhHHHHHhcCCCCCCcccc
Q 015112 225 LTKSDIFWVTPRRTLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPESYFQTVICNVPEFVPTVVN 304 (413)
Q Consensus 225 ~~k~~~~~~~~kR~~p~~~~l~~GS~W~~LsR~fvey~l~~~d~lpr~ll~yf~~~~~pDE~yFqTvl~Ns~~f~~t~vn 304 (413)
.+++.+.|.. +|+++++++||.|++|||+||+||+++ ++|+++++||+++++|||+||||++||+ |..+.++
T Consensus 249 ~~~s~~~~~~----lp~~~ki~~Gs~~~~LsR~fv~y~i~~--~~~~~ll~~~~~t~~~dE~f~~Tl~~n~--~~~~g~~ 320 (439)
T KOG0799|consen 249 RNKSPLPWVI----LPTALKLFKGSAWVSLSRAFVEYLISG--NLPRTLLMYYNNTYSPDEGFFHTLQCNP--FGMPGVF 320 (439)
T ss_pred eecCCCcccc----CCCceEEEecceeEEEeHHHHHHHhcC--ccHHHHHHHHhCccCcchhhhHhhhccc--cCCCCcc
Confidence 7888877755 899999999999999999999999985 8999999999999999999999999998 8888899
Q ss_pred Cc--eeEEecCC----CCCCCCCccChhhHHHHhcCCc-eEEeccC--CCHHHHHHHHHHHhCCCCCCCCCCccccCC--
Q 015112 305 HD--LHYISWDN----PPGQHPHILSLNDTSEMISSSA-AFARKFR--QNALVLDKIDKELLGRKNGSFTPGAWCSGD-- 373 (413)
Q Consensus 305 ~~--LRyi~W~~----~~~~~P~~l~~~D~~~l~~S~a-lFARKF~--~d~~vLd~Id~~ll~r~~~~~~~g~w~~~~-- 373 (413)
++ +||+.|+. ++++||+.++..|...|..++. .|||||. .++++++++|.+++++.....++|+||...
T Consensus 321 ~~~~lr~~~W~~~~~~~~~~~c~~~~~~~~~cv~g~~~~~~~~k~~~l~~nkvl~~~d~~~i~c~~~~~~~~~~~~~~~~ 400 (439)
T KOG0799|consen 321 NDECLRYTNWDRKDVDPPKQHCHSLTVRDFICVFGSGDLPFARKFPHLVANKVLDKFDPELIGCLAEFNRTGGWCDHSLR 400 (439)
T ss_pred cchhhcceecccccccccccCCcccccccceeeeecchhHHHhhCchhhcccchhccCHHHHhhhhhccCcccccccccc
Confidence 99 99999998 6788999999999999999998 9999999 589999999999999988878999999333
Q ss_pred -CCCCCCCCCCcccCCchhHHHHHHHHHhhcccCCCCCC
Q 015112 374 -PHCSKVGDPNKIKPGPGAERLRRLVARLTMEAKRGLNQ 411 (413)
Q Consensus 374 -~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (413)
++|+.+++...++|||++.|++.++..++..++|+..|
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (439)
T KOG0799|consen 401 TLPCSELGDAVKLTPGPGAPRLEELCTPLLSHENFRLYQ 439 (439)
T ss_pred cccccccccceeeccCCcchhHHhhhhccccchhhhccC
Confidence 89999999999999999999999999999999998876
No 3
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=3.7e-53 Score=405.29 Aligned_cols=238 Identities=35% Similarity=0.525 Sum_probs=158.3
Q ss_pred EEEEEEeeCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccHHHH
Q 015112 72 FAYLVSGSKGDLEKLWRTLQALYHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVAN 151 (413)
Q Consensus 72 iAYLI~~hk~d~~~l~RLL~aLy~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 151 (413)
|||||++|+++++++++|++++|+|+|.||||||+|++...+.+++... .+++||++++++..|.|||+|||+|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~~~~~~f~iHiD~k~~~~~~~~~~~~~------~~~~nv~~v~~r~~v~WG~~S~v~A 74 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLYHPDNDFYIHIDKKSPDYFYEEIKKLI------SCFPNVHFVPKRVDVRWGGFSLVEA 74 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH--TTSEEEEEE-TTS-HHHHHHHHHHH------CT-TTEEE-SS-----TTSHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhcCCCCEEEEEEcCCCChHHHHHHHHhc------ccCCceeecccccccccCCccHHHH
Confidence 7999999998999999999999999999999999999988888777543 4789999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCceEEeccCCcccccchhHHHHHHhccCCCcceEEeecCCCCcceecccccccCCCccccccccce
Q 015112 152 TLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFSGLSRKLNFIEHTSHLGWKEEKRAMPLMVDPGLYMLTKSDIF 231 (413)
Q Consensus 152 tL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f~~~~~~~nFIe~~~~~~wk~~~R~~~~i~dpgl~~~~k~~~~ 231 (413)
||.||+.|++.+.+|||||||||+||||+|+++|.++|+..+.+.+|+++....+.....|.++...++..+..
T Consensus 75 ~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~------ 148 (244)
T PF02485_consen 75 TLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFF------ 148 (244)
T ss_dssp HHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEE------
T ss_pred HHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeeccccc------
Confidence 99999999996679999999999999999999999999886677899998766543322333322112211110
Q ss_pred eeccCCCCCCCeeeeccceeeeecHHHHHHhhhccCCchHHHHHhh-cCCCCCCchhHHHHHhcCCCCCCccccCceeEE
Q 015112 232 WVTPRRTLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYY-TNFVSSPESYFQTVICNVPEFVPTVVNHDLHYI 310 (413)
Q Consensus 232 ~~~~kR~~p~~~~l~~GS~W~~LsR~fvey~l~~~d~lpr~ll~yf-~~~~~pDE~yFqTvl~Ns~~f~~t~vn~~LRyi 310 (413)
.++ ++|+|||||+|||++|+||+. |..+...+++| +++++|||+|||||++|++.|+++++++++|||
T Consensus 149 ---~~~------~~~~GSqW~~Ltr~~v~~il~--~~~~~~~~~~~~~~~~~pDE~ffqTll~n~~~~~~~~~~~~~r~i 217 (244)
T PF02485_consen 149 ---RKR------TLYKGSQWFSLTRDFVEYILD--DPNYRPKLKKYFRFSLCPDESFFQTLLNNSGHFKDTIVNRNLRYI 217 (244)
T ss_dssp ---EEE--------EEE-S--EEEHHHHHHHHH---HHHHHHHHHHT-TSSSGGGTHHHHH--SSGGG-B-TTTSSSEEE
T ss_pred ---ccc------cccccceeeEeeHHHHHHhhh--hHHHHHHHHHhhcCccCcchhhHHHhhcccchhcccccCCCEEEE
Confidence 011 899999999999999999995 44444444444 599999999999999999789999999999999
Q ss_pred ecCCCCCCCCC-----ccChhhHHHHh
Q 015112 311 SWDNPPGQHPH-----ILSLNDTSEMI 332 (413)
Q Consensus 311 ~W~~~~~~~P~-----~l~~~D~~~l~ 332 (413)
+|++..+.||+ .++++|+++|.
T Consensus 218 ~W~~~~~~~p~~~~~~~~~~~d~~~~~ 244 (244)
T PF02485_consen 218 DWSRRGGCHPKTLTICDLGPEDLPWLK 244 (244)
T ss_dssp -BTGT-SS---SSEEEE--GGGHHHH-
T ss_pred ECCCCCCCCCCeeeeeeeCHHHHHhhC
Confidence 99954466665 55778888773
No 4
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=93.97 E-value=3.9 Score=41.92 Aligned_cols=118 Identities=9% Similarity=0.008 Sum_probs=72.2
Q ss_pred CCCCcEEEEEEeeCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCcc-ceee
Q 015112 67 PKIPRFAYLVSGSKGDLEKLWRTLQALY---HPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKA-NMVT 142 (413)
Q Consensus 67 ~~~~kiAYLI~~hk~d~~~l~RLL~aLy---~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~-~~V~ 142 (413)
+..|++..+|-+++ +.+.+.++|+.|. .|.+.=+|-+|..|.+...+.++++.+..+ ..++++++... ....
T Consensus 37 ~~~p~VSVIIpa~N-e~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~---~~~~i~vi~~~~~~~g 112 (384)
T TIGR03469 37 EAWPAVVAVVPARN-EADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYG---RGDRLTVVSGQPLPPG 112 (384)
T ss_pred CCCCCEEEEEecCC-cHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcC---CCCcEEEecCCCCCCC
Confidence 45678999999988 5799999999985 343444677788777665555554432211 12378887632 2345
Q ss_pred ecCccHHHHHHHHHHHHHhCCCCCceEEeccCCcccccch-hHHHHHHh
Q 015112 143 YRGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQ-DDLLYTFS 190 (413)
Q Consensus 143 wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~-~~i~~~f~ 190 (413)
|+| ...|.-.+++.+-+...+-||++.+.+.+.+-... +++.+.+.
T Consensus 113 ~~G--k~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~ 159 (384)
T TIGR03469 113 WSG--KLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARAR 159 (384)
T ss_pred Ccc--hHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHH
Confidence 555 33444455555543334478999999988863222 44444443
No 5
>PRK11204 N-glycosyltransferase; Provisional
Probab=90.66 E-value=9 Score=39.35 Aligned_cols=105 Identities=10% Similarity=0.097 Sum_probs=62.5
Q ss_pred CCCCcEEEEEEeeCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeee
Q 015112 67 PKIPRFAYLVSGSKGDLEKLWRTLQALY---HPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTY 143 (413)
Q Consensus 67 ~~~~kiAYLI~~hk~d~~~l~RLL~aLy---~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~w 143 (413)
+..|+++.+|-+|+ +.+.+.++++++. .|+..++| +|..+++...+.+++.. ..++++.++.... .
T Consensus 51 ~~~p~vsViIp~yn-e~~~i~~~l~sl~~q~yp~~eiiV-vdD~s~d~t~~~l~~~~------~~~~~v~~i~~~~---n 119 (420)
T PRK11204 51 KEYPGVSILVPCYN-EGENVEETISHLLALRYPNYEVIA-INDGSSDNTGEILDRLA------AQIPRLRVIHLAE---N 119 (420)
T ss_pred CCCCCEEEEEecCC-CHHHHHHHHHHHHhCCCCCeEEEE-EECCCCccHHHHHHHHH------HhCCcEEEEEcCC---C
Confidence 34578999999999 5788999888874 45445555 56555555444444332 2456788776221 1
Q ss_pred cCccHHHHHHHHHHHHHhCCCCCceEEeccCCcccccc-hhHHHHHH
Q 015112 144 RGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVT-QDDLLYTF 189 (413)
Q Consensus 144 gg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~~~i~~~f 189 (413)
+| ...|-- ..++. .+.||++.+.+.+.|-.. ..++.+.|
T Consensus 120 ~G--ka~aln----~g~~~-a~~d~i~~lDaD~~~~~d~L~~l~~~~ 159 (420)
T PRK11204 120 QG--KANALN----TGAAA-ARSEYLVCIDGDALLDPDAAAYMVEHF 159 (420)
T ss_pred CC--HHHHHH----HHHHH-cCCCEEEEECCCCCCChhHHHHHHHHH
Confidence 22 222322 22222 357999999999987432 23444444
No 6
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=89.43 E-value=13 Score=38.81 Aligned_cols=106 Identities=9% Similarity=0.200 Sum_probs=61.7
Q ss_pred CCCCcEEEEEEeeCCCHHHHHHHHHHHc---CCCCeE-EEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceee
Q 015112 67 PKIPRFAYLVSGSKGDLEKLWRTLQALY---HPRNRY-VLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVT 142 (413)
Q Consensus 67 ~~~~kiAYLI~~hk~d~~~l~RLL~aLy---~p~n~y-~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~ 142 (413)
+..|+++.+|-+|+ ..+.+.++|+++. .|...+ +|-+|..+++...+.+++.. ..++++.+..... .
T Consensus 46 ~~~P~vsVIIP~yN-e~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~------~~~~~v~v~~~~~--~ 116 (439)
T TIGR03111 46 GKLPDITIIIPVYN-SEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQ------NEFPGLSLRYMNS--D 116 (439)
T ss_pred CCCCCEEEEEEeCC-ChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHH------HhCCCeEEEEeCC--C
Confidence 34578999999999 5799999998883 354433 66678777666544444322 2345666542111 1
Q ss_pred ecCccHHHHHHHHHHHHHhCCCCCceEEeccCCcccccc-hhHHHHHH
Q 015112 143 YRGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVT-QDDLLYTF 189 (413)
Q Consensus 143 wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~~~i~~~f 189 (413)
+|.+ . ++..+++. .+-||++.+.+.+.|-.. .+++...|
T Consensus 117 -~Gka--~----AlN~gl~~-s~g~~v~~~DaD~~~~~d~L~~l~~~f 156 (439)
T TIGR03111 117 -QGKA--K----ALNAAIYN-SIGKYIIHIDSDGKLHKDAIKNMVTRF 156 (439)
T ss_pred -CCHH--H----HHHHHHHH-ccCCEEEEECCCCCcChHHHHHHHHHH
Confidence 3422 1 22222332 234789999999998432 23444444
No 7
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=87.53 E-value=18 Score=36.87 Aligned_cols=105 Identities=11% Similarity=0.042 Sum_probs=61.5
Q ss_pred CCcEEEEEEeeCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccc--eEeeCccceeee
Q 015112 69 IPRFAYLVSGSKGDLEKLWRTLQALY---HPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGN--VYMSTKANMVTY 143 (413)
Q Consensus 69 ~~kiAYLI~~hk~d~~~l~RLL~aLy---~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~N--V~vv~~~~~V~w 143 (413)
.|++..+|-+|+ +.+.+.+.|+.+- .|+..++| +|..+++...+.++++.+ .+++ |.++.......|
T Consensus 40 ~p~VSViiP~~n-ee~~l~~~L~Sl~~q~Yp~~EIiv-vdd~s~D~t~~iv~~~~~------~~p~~~i~~v~~~~~~G~ 111 (373)
T TIGR03472 40 WPPVSVLKPLHG-DEPELYENLASFCRQDYPGFQMLF-GVQDPDDPALAVVRRLRA------DFPDADIDLVIDARRHGP 111 (373)
T ss_pred CCCeEEEEECCC-CChhHHHHHHHHHhcCCCCeEEEE-EeCCCCCcHHHHHHHHHH------hCCCCceEEEECCCCCCC
Confidence 577999999988 4578888888873 46656655 666665544444443332 3444 555543332333
Q ss_pred cCccHHHHHHHHHHHHHhCCCCCceEEeccCCcccccchhHHHHHHh
Q 015112 144 RGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFS 190 (413)
Q Consensus 144 gg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f~ 190 (413)
.+ .+.+..++++. .+.||++.+-+.+.| +.+-|.+...
T Consensus 112 ~~--K~~~l~~~~~~-----a~ge~i~~~DaD~~~--~p~~L~~lv~ 149 (373)
T TIGR03472 112 NR--KVSNLINMLPH-----ARHDILVIADSDISV--GPDYLRQVVA 149 (373)
T ss_pred Ch--HHHHHHHHHHh-----ccCCEEEEECCCCCc--ChhHHHHHHH
Confidence 22 33343333222 347899998888877 5665655443
No 8
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=86.76 E-value=18 Score=33.82 Aligned_cols=105 Identities=12% Similarity=0.035 Sum_probs=63.7
Q ss_pred CCCCCCcEEEEEEeeCCCHHHHHHHHHHHc---CCC--CeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccc
Q 015112 65 SGPKIPRFAYLVSGSKGDLEKLWRTLQALY---HPR--NRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKAN 139 (413)
Q Consensus 65 ~~~~~~kiAYLI~~hk~d~~~l~RLL~aLy---~p~--n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~ 139 (413)
.....|+++.+|.+|+ +.+.+.++|+.+. .|. ..++|..|... +...+.++.+. .. +|.++....
T Consensus 24 ~~~~~~~isVvip~~n-~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~-d~t~~~~~~~~-------~~-~v~~i~~~~ 93 (251)
T cd06439 24 DPAYLPTVTIIIPAYN-EEAVIEAKLENLLALDYPRDRLEIIVVSDGST-DGTAEIAREYA-------DK-GVKLLRFPE 93 (251)
T ss_pred CCCCCCEEEEEEecCC-cHHHHHHHHHHHHhCcCCCCcEEEEEEECCCC-ccHHHHHHHHh-------hC-cEEEEEcCC
Confidence 3456789999999999 5788988888873 233 35666666544 33333333321 11 677764322
Q ss_pred eeeecCccHHHHHHHHHHHHHhCCCCCceEEeccCCcccccchhHHHHHHhc
Q 015112 140 MVTYRGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFSG 191 (413)
Q Consensus 140 ~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f~~ 191 (413)
. .+...|--.+++.+ .-||++.+.+.+.|- .+.+.+.+..
T Consensus 94 ~-----~g~~~a~n~gi~~a-----~~d~i~~lD~D~~~~--~~~l~~l~~~ 133 (251)
T cd06439 94 R-----RGKAAALNRALALA-----TGEIVVFTDANALLD--PDALRLLVRH 133 (251)
T ss_pred C-----CChHHHHHHHHHHc-----CCCEEEEEccccCcC--HHHHHHHHHH
Confidence 1 23444444444443 139999999999995 5656555544
No 9
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=86.17 E-value=12 Score=34.53 Aligned_cols=99 Identities=12% Similarity=0.025 Sum_probs=59.2
Q ss_pred cEEEEEEeeCCCHHHHHHHHHHHc---CC-CCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCc
Q 015112 71 RFAYLVSGSKGDLEKLWRTLQALY---HP-RNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGP 146 (413)
Q Consensus 71 kiAYLI~~hk~d~~~l~RLL~aLy---~p-~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~ 146 (413)
+++.+|.+++ +.+.+.++|+.+. .| .+.=+|=+|..+++...+.++.+. ...++|+++..... |
T Consensus 1 ~~sIiip~~n-~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~------~~~~~v~~i~~~~~----~- 68 (249)
T cd02525 1 FVSIIIPVRN-EEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYA------AKDPRIRLIDNPKR----I- 68 (249)
T ss_pred CEEEEEEcCC-chhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHH------hcCCeEEEEeCCCC----C-
Confidence 4677888888 6888999888884 22 233355556666655444444432 23567888764421 2
Q ss_pred cHHHHHHHHHHHHHhCCCCCceEEeccCCcccccchhHHHHHH
Q 015112 147 TMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTF 189 (413)
Q Consensus 147 S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f 189 (413)
...|--.+++.+ +.||++.|.+.|.+ +.+.+.+.+
T Consensus 69 -~~~a~N~g~~~a-----~~d~v~~lD~D~~~--~~~~l~~~~ 103 (249)
T cd02525 69 -QSAGLNIGIRNS-----RGDIIIRVDAHAVY--PKDYILELV 103 (249)
T ss_pred -chHHHHHHHHHh-----CCCEEEEECCCccC--CHHHHHHHH
Confidence 122333333332 47999999999986 555555544
No 10
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=83.97 E-value=14 Score=39.76 Aligned_cols=102 Identities=11% Similarity=0.025 Sum_probs=62.0
Q ss_pred CCCcEEEEEEeeCCCHHHHHHHHHH----HcCCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeee
Q 015112 68 KIPRFAYLVSGSKGDLEKLWRTLQA----LYHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTY 143 (413)
Q Consensus 68 ~~~kiAYLI~~hk~d~~~l~RLL~a----Ly~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~w 143 (413)
+.|+++.+|-+|+ +.+.+.++|+. ++.|+-.++|=.|... +...+.++... ..++||+++..+. -
T Consensus 64 ~~p~vaIlIPA~N-E~~vI~~~l~s~L~~ldY~~~eIiVv~d~nd-d~T~~~v~~l~------~~~p~v~~vv~~~---~ 132 (504)
T PRK14716 64 PEKRIAIFVPAWR-EADVIGRMLEHNLATLDYENYRIFVGTYPND-PATLREVDRLA------ARYPRVHLVIVPH---D 132 (504)
T ss_pred CCCceEEEEeccC-chhHHHHHHHHHHHcCCCCCeEEEEEECCCC-hhHHHHHHHHH------HHCCCeEEEEeCC---C
Confidence 3788999999999 67778777764 3446656666555443 33233333322 3577887543211 1
Q ss_pred cCccHHHHHHHHHHHHHh----CCCCCceEEeccCCccccc
Q 015112 144 RGPTMVANTLHACAILLK----NSKDWDWFINLSASDYPLV 180 (413)
Q Consensus 144 gg~S~V~AtL~~~~~lL~----~~~~wdyfi~LSgsDyPLk 180 (413)
|+.+...|--.+++.+.. .+.++|+++.+-+.|.|=.
T Consensus 133 gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~P 173 (504)
T PRK14716 133 GPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHP 173 (504)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCc
Confidence 334555555555554422 2346899999999888654
No 11
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=78.34 E-value=26 Score=31.94 Aligned_cols=103 Identities=24% Similarity=0.166 Sum_probs=56.8
Q ss_pred CcEEEEEEeeCCCHHHHHHHHHHHcC---CC--CeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeec
Q 015112 70 PRFAYLVSGSKGDLEKLWRTLQALYH---PR--NRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYR 144 (413)
Q Consensus 70 ~kiAYLI~~hk~d~~~l~RLL~aLy~---p~--n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wg 144 (413)
|++..+|-+++.+.+.++++|+.+-. |+ -.++| +|..+++...+.++.+.. .. ++.++... ..+|
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiiv-vdd~s~d~t~~~~~~~~~------~~-~~~~~~~~--~~~~ 70 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYV-LDDGRRPELRALAAELGV------EY-GYRYLTRP--DNRH 70 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEE-EcCCCchhHHHHHHHhhc------cc-CceEEEeC--CCCC
Confidence 46788888988556778888888732 44 24444 676666554444443211 11 34444322 2334
Q ss_pred CccHHHHHHHHHHHHHhCCCCCceEEeccCCcccccchhHHHHHHhc
Q 015112 145 GPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFSG 191 (413)
Q Consensus 145 g~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f~~ 191 (413)
+.. .+.-.+++. .+.||++.|.+.|++ +.+.|.+....
T Consensus 71 ~~~--~~~n~~~~~-----a~~d~i~~lD~D~~~--~~~~l~~l~~~ 108 (234)
T cd06421 71 AKA--GNLNNALAH-----TTGDFVAILDADHVP--TPDFLRRTLGY 108 (234)
T ss_pred CcH--HHHHHHHHh-----CCCCEEEEEccccCc--CccHHHHHHHH
Confidence 321 111222222 247999999999998 44566555543
No 12
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=77.07 E-value=6.4 Score=36.16 Aligned_cols=114 Identities=17% Similarity=0.148 Sum_probs=54.3
Q ss_pred CcEEEEEEeeCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCChHHHHHHHhhhccCCCccccc--ceEeeCccceeeec
Q 015112 70 PRFAYLVSGSKGDLEKLWRTLQALYH---PRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVG--NVYMSTKANMVTYR 144 (413)
Q Consensus 70 ~kiAYLI~~hk~d~~~l~RLL~aLy~---p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~--NV~vv~~~~~V~wg 144 (413)
|+++.+|.+++ ..+.+.++|+++-+ |+-.++| +|..+++...+.+++..+ .++ .|+++...... |
T Consensus 1 P~v~Vvip~~~-~~~~l~~~l~sl~~~~~~~~~v~v-vd~~~~~~~~~~~~~~~~------~~~~~~v~vi~~~~~~--g 70 (228)
T PF13641_consen 1 PRVSVVIPAYN-EDDVLRRCLESLLAQDYPRLEVVV-VDDGSDDETAEILRALAA------RYPRVRVRVIRRPRNP--G 70 (228)
T ss_dssp --EEEE--BSS--HHHHHHHHHHHTTSHHHTEEEEE-EEE-SSS-GCTTHHHHHH------TTGG-GEEEEE----H--H
T ss_pred CEEEEEEEecC-CHHHHHHHHHHHHcCCCCCeEEEE-EECCCChHHHHHHHHHHH------HcCCCceEEeecCCCC--C
Confidence 56899999988 67899999999953 5545555 454343332233333222 233 35665432111 1
Q ss_pred CccHHHHHHHHHHHHHhCCCCCceEEeccCCcccccchhHHHHHHhcc-CCCcceEE
Q 015112 145 GPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFSGL-SRKLNFIE 200 (413)
Q Consensus 145 g~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f~~~-~~~~nFIe 200 (413)
..+...|.-++++.. +.||++.|.+.+.| ..+-|.+.+..+ ..+...+.
T Consensus 71 ~~~k~~a~n~~~~~~-----~~d~i~~lD~D~~~--~p~~l~~~~~~~~~~~~~~v~ 120 (228)
T PF13641_consen 71 PGGKARALNEALAAA-----RGDYILFLDDDTVL--DPDWLERLLAAFADPGVGAVG 120 (228)
T ss_dssp HHHHHHHHHHHHHH--------SEEEEE-SSEEE---CHHHHHHHHHHHBSS--EEE
T ss_pred cchHHHHHHHHHHhc-----CCCEEEEECCCcEE--CHHHHHHHHHHHHhCCCCeEe
Confidence 113344444444442 37899999999888 444444433322 45666665
No 13
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=75.54 E-value=17 Score=35.74 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=60.3
Q ss_pred CCcEEEEEEeeCCCHHHHHHHHHHHcCCCC--eEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCc
Q 015112 69 IPRFAYLVSGSKGDLEKLWRTLQALYHPRN--RYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGP 146 (413)
Q Consensus 69 ~~kiAYLI~~hk~d~~~l~RLL~aLy~p~n--~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~ 146 (413)
.|+++-+|..|. ..+.+...|..|..... .++|-+|..+++...+.++.. .+++|.+++......|+|-
T Consensus 2 ~~~i~~iiv~yn-~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~--------~~~~v~~i~~~~NlG~agg 72 (305)
T COG1216 2 MPKISIIIVTYN-RGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKAR--------FFPNVRLIENGENLGFAGG 72 (305)
T ss_pred CcceEEEEEecC-CHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhh--------cCCcEEEEEcCCCccchhh
Confidence 367888888888 58888888888854333 333356888877766655431 1789999987776766664
Q ss_pred cHHHHHHHHHHHHHhCCCCCceEEeccCCc
Q 015112 147 TMVANTLHACAILLKNSKDWDWFINLSASD 176 (413)
Q Consensus 147 S~V~AtL~~~~~lL~~~~~wdyfi~LSgsD 176 (413)
-. .+++.++..+. + ++++-..|
T Consensus 73 ~n-----~g~~~a~~~~~--~-~~l~LN~D 94 (305)
T COG1216 73 FN-----RGIKYALAKGD--D-YVLLLNPD 94 (305)
T ss_pred hh-----HHHHHHhcCCC--c-EEEEEcCC
Confidence 33 67777876432 2 45555566
No 14
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=74.84 E-value=48 Score=34.62 Aligned_cols=94 Identities=11% Similarity=0.056 Sum_probs=58.1
Q ss_pred CCCcEEEEEEeeCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeec
Q 015112 68 KIPRFAYLVSGSKGDLEKLWRTLQALY---HPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYR 144 (413)
Q Consensus 68 ~~~kiAYLI~~hk~d~~~l~RLL~aLy---~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wg 144 (413)
..|+++.+|-+|+ +.+.+.++++++- .|+-. +|-+|..+++...+.+++..+ ..+++.++... ..+
T Consensus 73 ~~p~vsViIP~yN-E~~~i~~~l~sll~q~yp~~e-IivVdDgs~D~t~~~~~~~~~------~~~~v~vv~~~---~n~ 141 (444)
T PRK14583 73 GHPLVSILVPCFN-EGLNARETIHAALAQTYTNIE-VIAINDGSSDDTAQVLDALLA------EDPRLRVIHLA---HNQ 141 (444)
T ss_pred CCCcEEEEEEeCC-CHHHHHHHHHHHHcCCCCCeE-EEEEECCCCccHHHHHHHHHH------hCCCEEEEEeC---CCC
Confidence 4578999999999 5678888888873 36545 455665555554455544332 35677776421 123
Q ss_pred CccHHHHHHHHHHHHHhCCCCCceEEeccCCcccc
Q 015112 145 GPTMVANTLHACAILLKNSKDWDWFINLSASDYPL 179 (413)
Q Consensus 145 g~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL 179 (413)
| ... ++...++. .+.||++.+.+.+.|-
T Consensus 142 G--ka~----AlN~gl~~-a~~d~iv~lDAD~~~~ 169 (444)
T PRK14583 142 G--KAI----ALRMGAAA-ARSEYLVCIDGDALLD 169 (444)
T ss_pred C--HHH----HHHHHHHh-CCCCEEEEECCCCCcC
Confidence 3 222 22233332 4579999999999874
No 15
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=74.48 E-value=20 Score=33.15 Aligned_cols=103 Identities=17% Similarity=0.076 Sum_probs=56.2
Q ss_pred CcEEEEEEeeCCCHHHHHHHHHHHcC---CC-CeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecC
Q 015112 70 PRFAYLVSGSKGDLEKLWRTLQALYH---PR-NRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRG 145 (413)
Q Consensus 70 ~kiAYLI~~hk~d~~~l~RLL~aLy~---p~-n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg 145 (413)
|++..+|.+|+ ..+.+.++|++|.. |. ..-+|-+|. +++...+.+++..+..+ ....+|..+...... |
T Consensus 1 p~vSViIp~yN-e~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~--~~~~~i~~~~~~~~~---G 73 (232)
T cd06437 1 PMVTVQLPVFN-EKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEYA--AQGVNIKHVRRADRT---G 73 (232)
T ss_pred CceEEEEecCC-cHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHHh--hcCCceEEEECCCCC---C
Confidence 46888999998 68999999999843 43 234555786 65554444444322110 112355544322222 2
Q ss_pred ccHHHHHHHHHHHHHhCCCCCceEEeccCCcccccchhHHHH
Q 015112 146 PTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLY 187 (413)
Q Consensus 146 ~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~ 187 (413)
+ ...| +...++. .+.||++.+-+.+++ ..+-|.+
T Consensus 74 ~-k~~a----~n~g~~~-a~~~~i~~~DaD~~~--~~~~l~~ 107 (232)
T cd06437 74 Y-KAGA----LAEGMKV-AKGEYVAIFDADFVP--PPDFLQK 107 (232)
T ss_pred C-chHH----HHHHHHh-CCCCEEEEEcCCCCC--ChHHHHH
Confidence 1 1111 1122222 246999999999887 4444444
No 16
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=72.16 E-value=26 Score=35.03 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=53.4
Q ss_pred CCCcEEEEEEeeCCCH--HHHHHHHHHH-----------cCCCCeEEEEEc--CCCChHHHHHHHhhhccCCCcc---cc
Q 015112 68 KIPRFAYLVSGSKGDL--EKLWRTLQAL-----------YHPRNRYVLHLD--LEAPTEERLELASRVEKDPMFS---KV 129 (413)
Q Consensus 68 ~~~kiAYLI~~hk~d~--~~l~RLL~aL-----------y~p~n~y~IHlD--~ks~~~~~~~L~~~v~~~~~~~---~~ 129 (413)
....+|||+.|..|-. .....+.+++ .||.|.++ +| .+. -..+++....+.-+... .-
T Consensus 15 ~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~--~d~~g~~--i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 15 NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIIL--FDIFDKD--LSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEE--eccCCCc--CCHHHHHHHHHHhccCCcccCC
Confidence 3588999999887532 3345555565 25655444 47 332 11223333333323222 24
Q ss_pred cceEeeCccceeeecCccHHHHHHHHHHHHHhCCCCCceEEeccC
Q 015112 130 GNVYMSTKANMVTYRGPTMVANTLHACAILLKNSKDWDWFINLSA 174 (413)
Q Consensus 130 ~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSg 174 (413)
..|.++.+. -.|-.+..+++--.++++++..+||+++.
T Consensus 91 ~KvvII~~~-------e~m~~~a~NaLLK~LEEPp~~t~~il~~~ 128 (299)
T PRK07132 91 KKILIIKNI-------EKTSNSLLNALLKTIEEPPKDTYFLLTTK 128 (299)
T ss_pred ceEEEEecc-------cccCHHHHHHHHHHhhCCCCCeEEEEEeC
Confidence 466666653 23333344455556677888999999886
No 17
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=71.20 E-value=72 Score=28.31 Aligned_cols=104 Identities=11% Similarity=0.042 Sum_probs=56.3
Q ss_pred CcEEEEEEeeCCCHHHHHHHHHHHcCC--CCeEEEEEcCCCChHHHHH-HHhhhccCCCcccccceEeeCccceeeecCc
Q 015112 70 PRFAYLVSGSKGDLEKLWRTLQALYHP--RNRYVLHLDLEAPTEERLE-LASRVEKDPMFSKVGNVYMSTKANMVTYRGP 146 (413)
Q Consensus 70 ~kiAYLI~~hk~d~~~l~RLL~aLy~p--~n~y~IHlD~ks~~~~~~~-L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~ 146 (413)
|++..+|.+++++.+.+.++|+.|..- .+.-+|=+|..+++..-++ ++.+.+ ..+++.++.... ..
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~------~~~~~~~~~~~~-----~~ 69 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAA------QDPRIKVVFREE-----NG 69 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHh------cCCCEEEEEccc-----CC
Confidence 468889999985338999999998531 1223455555554432222 222221 234566553221 12
Q ss_pred cHHHHHHHHHHHHHhCCCCCceEEeccCCcccccc-hhHHHHHH
Q 015112 147 TMVANTLHACAILLKNSKDWDWFINLSASDYPLVT-QDDLLYTF 189 (413)
Q Consensus 147 S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~~~i~~~f 189 (413)
....|--.+++.+ .-||+..+.+.|.+-.. .+.+.+.+
T Consensus 70 g~~~a~n~g~~~a-----~~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 70 GISAATNSALELA-----TGEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred CHHHHHHHHHHhh-----cCCEEEEECCCCcCChHHHHHHHHHH
Confidence 3344444444443 24899999888877332 24444444
No 18
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=70.92 E-value=76 Score=31.98 Aligned_cols=112 Identities=6% Similarity=0.000 Sum_probs=61.3
Q ss_pred CCCCCcEEEEEEeeCCCHHHHHHHHHHHcC---------CC-CeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEee
Q 015112 66 GPKIPRFAYLVSGSKGDLEKLWRTLQALYH---------PR-NRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMS 135 (413)
Q Consensus 66 ~~~~~kiAYLI~~hk~d~~~l~RLL~aLy~---------p~-n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv 135 (413)
.++.+.+..+|-+++ +.+.+.++|+.+.. +. +.=+|-||-.|++...+.++++.+... ..-.+++++
T Consensus 66 ~~~~~~isVVIP~yN-e~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~--~~~~~i~vi 142 (333)
T PTZ00260 66 KDSDVDLSIVIPAYN-EEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNI--NPNIDIRLL 142 (333)
T ss_pred CCCCeEEEEEEeeCC-CHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcC--CCCCcEEEE
Confidence 456789999999999 57888888877642 22 334666777666654444444332110 011357776
Q ss_pred CccceeeecCccHHHHHHHHHHHHHhCCCCCceEEeccCCcc-cccchhHHHHHHh
Q 015112 136 TKANMVTYRGPTMVANTLHACAILLKNSKDWDWFINLSASDY-PLVTQDDLLYTFS 190 (413)
Q Consensus 136 ~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDy-PLkt~~~i~~~f~ 190 (413)
...... | .-.|.-.+++.+ .-||++++-+.+. +....+.+.+.+.
T Consensus 143 ~~~~N~---G--~~~A~~~Gi~~a-----~gd~I~~~DaD~~~~~~~l~~l~~~l~ 188 (333)
T PTZ00260 143 SLLRNK---G--KGGAVRIGMLAS-----RGKYILMVDADGATDIDDFDKLEDIML 188 (333)
T ss_pred EcCCCC---C--hHHHHHHHHHHc-----cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 532211 2 223333344432 2378888877654 3344445555553
No 19
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=70.34 E-value=44 Score=30.55 Aligned_cols=124 Identities=22% Similarity=0.226 Sum_probs=72.6
Q ss_pred EEEeeCCCHHHHHHHHHHH----cCCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccHHH
Q 015112 75 LVSGSKGDLEKLWRTLQAL----YHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVA 150 (413)
Q Consensus 75 LI~~hk~d~~~l~RLL~aL----y~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~ 150 (413)
++++++|-..||.+|++.+ +.++.+++=.-|..+ ...-.++++...........++.+-+.+. -.+.-++++.
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S-~~k~~~~~~~~~~~~~~~~~~r~r~v~q~--~~~~~~~~l~ 79 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQS-RSKAEQLEKSSSKRHKILEIPRAREVGQS--YLTSIFTTLR 79 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCccc-HHHHHHHHHhccccceeeccceEEEechh--hHhhHHHHHH
Confidence 5667777789999999999 544333333333332 22112233221110011233444444332 1223468888
Q ss_pred HHHHHHHHHHhCCCCCc-eEEeccCCcccccchhHHHHHHhccCCCcceEEeec
Q 015112 151 NTLHACAILLKNSKDWD-WFINLSASDYPLVTQDDLLYTFSGLSRKLNFIEHTS 203 (413)
Q Consensus 151 AtL~~~~~lL~~~~~wd-yfi~LSgsDyPLkt~~~i~~~f~~~~~~~nFIe~~~ 203 (413)
+.+.++..+.+..+ | -+-|=.|.++|+.=..-+.+.|.-.....-|||+..
T Consensus 80 ~~~~~~~il~r~rP--dvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~a 131 (170)
T PF08660_consen 80 AFLQSLRILRRERP--DVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESFA 131 (170)
T ss_pred HHHHHHHHHHHhCC--CEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 99999999987643 4 344567899999988888887754445567888754
No 20
>PRK10063 putative glycosyl transferase; Provisional
Probab=70.29 E-value=1e+02 Score=29.45 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=62.5
Q ss_pred CcEEEEEEeeCCCHHHHHHHHHHHcC-----CCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeec
Q 015112 70 PRFAYLVSGSKGDLEKLWRTLQALYH-----PRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYR 144 (413)
Q Consensus 70 ~kiAYLI~~hk~d~~~l~RLL~aLy~-----p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wg 144 (413)
|++..+|.+++ ..+.+.++|+.+.. ..+.=+|-+|..|++...+.++.+. ...++.++..++ .
T Consensus 1 ~~vSVIi~~yN-~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~-------~~~~i~~i~~~~----~ 68 (248)
T PRK10063 1 MLLSVITVAFR-NLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLN-------GIFNLRFVSEPD----N 68 (248)
T ss_pred CeEEEEEEeCC-CHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhc-------ccCCEEEEECCC----C
Confidence 67888999998 68889998888841 2345578888888776555444321 112567665332 2
Q ss_pred CccHHHHHHHHHHHHHhCCCCCceEEeccCCcccccchhHHHHHH
Q 015112 145 GPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTF 189 (413)
Q Consensus 145 g~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f 189 (413)
|. -.|.-.+++.+ .-+|+..|.+.|...-...++...+
T Consensus 69 G~--~~A~N~Gi~~a-----~g~~v~~ld~DD~~~~~~~~~~~~~ 106 (248)
T PRK10063 69 GI--YDAMNKGIAMA-----QGRFALFLNSGDIFHQDAANFVRQL 106 (248)
T ss_pred CH--HHHHHHHHHHc-----CCCEEEEEeCCcccCcCHHHHHHHH
Confidence 32 23333344443 2489999999999876443444444
No 21
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=69.41 E-value=3 Score=29.32 Aligned_cols=29 Identities=31% Similarity=0.491 Sum_probs=24.2
Q ss_pred EEeeCCCHHHHHHHHHHHcCCCCeEEEEEcC
Q 015112 76 VSGSKGDLEKLWRTLQALYHPRNRYVLHLDL 106 (413)
Q Consensus 76 I~~hk~d~~~l~RLL~aLy~p~n~y~IHlD~ 106 (413)
.+||. |.++|..+++.+ .|++.++||=|.
T Consensus 14 fSgHa-d~~~L~~~i~~~-~p~~vilVHGe~ 42 (43)
T PF07521_consen 14 FSGHA-DREELLEFIEQL-NPRKVILVHGEP 42 (43)
T ss_dssp CSSS--BHHHHHHHHHHH-CSSEEEEESSEH
T ss_pred ecCCC-CHHHHHHHHHhc-CCCEEEEecCCC
Confidence 45777 899999999999 799999999653
No 22
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=69.02 E-value=54 Score=28.78 Aligned_cols=96 Identities=13% Similarity=-0.011 Sum_probs=50.3
Q ss_pred EEEeeCCCHHHHHHHHHHHc------CCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccH
Q 015112 75 LVSGSKGDLEKLWRTLQALY------HPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTM 148 (413)
Q Consensus 75 LI~~hk~d~~~l~RLL~aLy------~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~ 148 (413)
+|.+|+ ..+.+.++|+.|. .+.-.++| +|-.+++...+.++.+. ...+||.++... -..| .
T Consensus 2 iIp~~n-~~~~l~~~l~sl~~~~~~~~~~~eiiv-vdd~s~d~t~~~~~~~~------~~~~~i~~i~~~--~n~G---~ 68 (181)
T cd04187 2 VVPVYN-EEENLPELYERLKAVLESLGYDYEIIF-VDDGSTDRTLEILRELA------ARDPRVKVIRLS--RNFG---Q 68 (181)
T ss_pred EEeecC-chhhHHHHHHHHHHHHHhcCCCeEEEE-EeCCCCccHHHHHHHHH------hhCCCEEEEEec--CCCC---c
Confidence 566777 5788888777652 23334444 66666655444444332 234678776432 1222 2
Q ss_pred HHHHHHHHHHHHhCCCCCceEEeccCCcccccchhHHHHHHh
Q 015112 149 VANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFS 190 (413)
Q Consensus 149 V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f~ 190 (413)
..|.-.+++.+. -||++.+.+.+. + +.+.+...++
T Consensus 69 ~~a~n~g~~~a~-----~d~i~~~D~D~~-~-~~~~l~~l~~ 103 (181)
T cd04187 69 QAALLAGLDHAR-----GDAVITMDADLQ-D-PPELIPEMLA 103 (181)
T ss_pred HHHHHHHHHhcC-----CCEEEEEeCCCC-C-CHHHHHHHHH
Confidence 333333444321 288888887554 4 4445544443
No 23
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=68.39 E-value=21 Score=34.35 Aligned_cols=85 Identities=11% Similarity=0.087 Sum_probs=54.8
Q ss_pred eCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccHHHHHHHHHHH
Q 015112 79 SKGDLEKLWRTLQALYHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVANTLHACAI 158 (413)
Q Consensus 79 hk~d~~~l~RLL~aLy~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~ 158 (413)
+..+.+.|+++|++|. .++.-+|-||-.++.. ..++..+ ...++|+++...... +.-.|-=.+++.
T Consensus 3 yn~~~~~l~~~l~sl~-~q~~~iiVVDN~S~~~--~~~~~~~------~~~~~i~~i~~~~N~-----G~a~a~N~Gi~~ 68 (281)
T TIGR01556 3 FNPDLEHLGELITSLP-KQVDRIIAVDNSPHSD--QPLKNAR------LRGQKIALIHLGDNQ-----GIAGAQNQGLDA 68 (281)
T ss_pred cCccHHHHHHHHHHHH-hcCCEEEEEECcCCCc--HhHHHHh------ccCCCeEEEECCCCc-----chHHHHHHHHHH
Confidence 4445789999999997 4567788899876433 1222211 245788888643222 222344455666
Q ss_pred HHhCCCCCceEEeccCCcccc
Q 015112 159 LLKNSKDWDWFINLSASDYPL 179 (413)
Q Consensus 159 lL~~~~~wdyfi~LSgsDyPL 179 (413)
+++ .+.||++.|-..+.|-
T Consensus 69 a~~--~~~d~i~~lD~D~~~~ 87 (281)
T TIGR01556 69 SFR--RGVQGVLLLDQDSRPG 87 (281)
T ss_pred HHH--CCCCEEEEECCCCCCC
Confidence 664 3579999999999996
No 24
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=67.88 E-value=27 Score=29.29 Aligned_cols=99 Identities=16% Similarity=0.148 Sum_probs=60.9
Q ss_pred EEEeeCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccHHHH
Q 015112 75 LVSGSKGDLEKLWRTLQALY---HPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVAN 151 (413)
Q Consensus 75 LI~~hk~d~~~l~RLL~aLy---~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 151 (413)
+|.+++ ..+.|.++|+.|- ++...++| +|..+++...+.++.+.+ ...++.++..... ...-.+
T Consensus 3 vip~~n-~~~~l~~~l~sl~~q~~~~~eiiv-vdd~s~d~~~~~~~~~~~------~~~~i~~i~~~~n-----~g~~~~ 69 (169)
T PF00535_consen 3 VIPTYN-EAEYLERTLESLLKQTDPDFEIIV-VDDGSTDETEEILEEYAE------SDPNIRYIRNPEN-----LGFSAA 69 (169)
T ss_dssp EEEESS--TTTHHHHHHHHHHHSGCEEEEEE-EECS-SSSHHHHHHHHHC------CSTTEEEEEHCCC-----SHHHHH
T ss_pred EEEeeC-CHHHHHHHHHHHhhccCCCEEEEE-eccccccccccccccccc------ccccccccccccc-----cccccc
Confidence 566666 5788888888774 34455555 555555555555655432 3568887764422 245555
Q ss_pred HHHHHHHHHhCCCCCceEEeccCCcccccc-hhHHHHHHhc
Q 015112 152 TLHACAILLKNSKDWDWFINLSASDYPLVT-QDDLLYTFSG 191 (413)
Q Consensus 152 tL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~~~i~~~f~~ 191 (413)
.-.+++.+. -+|+..+.+.|++... .+++.+.+.+
T Consensus 70 ~n~~~~~a~-----~~~i~~ld~D~~~~~~~l~~l~~~~~~ 105 (169)
T PF00535_consen 70 RNRGIKHAK-----GEYILFLDDDDIISPDWLEELVEALEK 105 (169)
T ss_dssp HHHHHHH-------SSEEEEEETTEEE-TTHHHHHHHHHHH
T ss_pred ccccccccc-----eeEEEEeCCCceEcHHHHHHHHHHHHh
Confidence 555555543 2499999999999887 7777777765
No 25
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=67.16 E-value=44 Score=30.65 Aligned_cols=95 Identities=17% Similarity=0.141 Sum_probs=58.8
Q ss_pred EEEeeCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccHHHHHHH
Q 015112 75 LVSGSKGDLEKLWRTLQALYHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVANTLH 154 (413)
Q Consensus 75 LI~~hk~d~~~l~RLL~aLy~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~ 154 (413)
+|.++++..+.+.++|+.+... +.-+|=+|..+++..... ..+ ..+++.++.... + .| ...|--.
T Consensus 2 vI~~yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~-~~~--------~~~~i~~i~~~~--n-~G--~~~a~N~ 66 (237)
T cd02526 2 VVVTYNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIELR-LRL--------NSEKIELIHLGE--N-LG--IAKALNI 66 (237)
T ss_pred EEEEecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHHH-hhc--------cCCcEEEEECCC--c-ee--hHHhhhH
Confidence 5677885449999999999865 555666888765543222 111 245777764322 1 22 3333334
Q ss_pred HHHHHHhCCCCCceEEeccCCcccccchhHHHHH
Q 015112 155 ACAILLKNSKDWDWFINLSASDYPLVTQDDLLYT 188 (413)
Q Consensus 155 ~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~ 188 (413)
+++.+.. .+.||++.+.+.+++ +++.|.+.
T Consensus 67 g~~~a~~--~~~d~v~~lD~D~~~--~~~~l~~l 96 (237)
T cd02526 67 GIKAALE--NGADYVLLFDQDSVP--PPDMVEKL 96 (237)
T ss_pred HHHHHHh--CCCCEEEEECCCCCc--CHhHHHHH
Confidence 4444432 368999999999997 46667665
No 26
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=66.68 E-value=68 Score=28.84 Aligned_cols=105 Identities=12% Similarity=0.085 Sum_probs=55.5
Q ss_pred CcEEEEEEeeCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCc
Q 015112 70 PRFAYLVSGSKGDLEKLWRTLQALY---HPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGP 146 (413)
Q Consensus 70 ~kiAYLI~~hk~d~~~l~RLL~aLy---~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~ 146 (413)
|++..+|-+|+ ..+.+.++|+.+. +|...++| +|-.+++...+.++++.+..+ ..++.++.....+ |..
T Consensus 1 p~vsviip~~n-~~~~l~~~L~sl~~q~~~~~eiiv-Vdd~s~d~t~~~~~~~~~~~~----~~~~~~~~~~~~~--g~~ 72 (196)
T cd02520 1 PGVSILKPLCG-VDPNLYENLESFFQQDYPKYEILF-CVQDEDDPAIPVVRKLIAKYP----NVDARLLIGGEKV--GIN 72 (196)
T ss_pred CCeEEEEecCC-CCccHHHHHHHHHhccCCCeEEEE-EeCCCcchHHHHHHHHHHHCC----CCcEEEEecCCcC--CCC
Confidence 45788899998 4567888888884 34444444 555555554444544433211 1234444322222 222
Q ss_pred cHHHHHHHHHHHHHhCCCCCceEEeccCCcccccchhHHHHHH
Q 015112 147 TMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTF 189 (413)
Q Consensus 147 S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f 189 (413)
....+.- .+++. ...||++.+-+.+.+ +.+.|.+.+
T Consensus 73 ~~~~~~n----~g~~~-a~~d~i~~~D~D~~~--~~~~l~~l~ 108 (196)
T cd02520 73 PKVNNLI----KGYEE-ARYDILVISDSDISV--PPDYLRRMV 108 (196)
T ss_pred HhHHHHH----HHHHh-CCCCEEEEECCCceE--ChhHHHHHH
Confidence 2222222 22222 346899998887764 566665544
No 27
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=66.66 E-value=74 Score=29.05 Aligned_cols=92 Identities=10% Similarity=0.054 Sum_probs=55.5
Q ss_pred EEEEEEeeCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccHHHH
Q 015112 72 FAYLVSGSKGDLEKLWRTLQALYHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVAN 151 (413)
Q Consensus 72 iAYLI~~hk~d~~~l~RLL~aLy~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 151 (413)
+..+|.+|+.+.+.+.++|+.+......=+|=+|..+++.....+... ...+.+.++... .+| ...|
T Consensus 2 isVvIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~-------~~~~~~~v~~~~----~~g--~~~a 68 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQT-------VKYGGIFVITVP----HPG--KRRA 68 (235)
T ss_pred eEEEEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhh-------ccCCcEEEEecC----CCC--hHHH
Confidence 567888998534999999999975433334455555555544444211 134556655432 344 3334
Q ss_pred HHHHHHHHHhCCCCCceEEeccCCcccccc
Q 015112 152 TLHACAILLKNSKDWDWFINLSASDYPLVT 181 (413)
Q Consensus 152 tL~~~~~lL~~~~~wdyfi~LSgsDyPLkt 181 (413)
--.+++.+ +.||++.|.+.+.|-..
T Consensus 69 ~n~g~~~a-----~~d~v~~lD~D~~~~~~ 93 (235)
T cd06434 69 LAEGIRHV-----TTDIVVLLDSDTVWPPN 93 (235)
T ss_pred HHHHHHHh-----CCCEEEEECCCceeChh
Confidence 33444433 46999999999998755
No 28
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=65.44 E-value=1.7e+02 Score=32.85 Aligned_cols=116 Identities=20% Similarity=0.153 Sum_probs=62.0
Q ss_pred CCCCcEEEEEEeeCCCHHHHHHHHHHH---cCCC-CeEEEEEcCCCChH--------------HHHHHHhhhccCCCccc
Q 015112 67 PKIPRFAYLVSGSKGDLEKLWRTLQAL---YHPR-NRYVLHLDLEAPTE--------------ERLELASRVEKDPMFSK 128 (413)
Q Consensus 67 ~~~~kiAYLI~~hk~d~~~l~RLL~aL---y~p~-n~y~IHlD~ks~~~--------------~~~~L~~~v~~~~~~~~ 128 (413)
+..|+++.+|-+|+.+.+.++++++++ +.|. +.=++-+|..+++. .+.++++..+
T Consensus 128 ~~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~------- 200 (713)
T TIGR03030 128 EEWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCR------- 200 (713)
T ss_pred ccCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHH-------
Confidence 345789999999996666667777665 4463 32244445544321 2344444332
Q ss_pred ccceEeeCccceeeecCccHHHHHHHHHHHHHhCCCCCceEEeccCCcccccch-hHHHHHHhccCCCcceE
Q 015112 129 VGNVYMSTKANMVTYRGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQ-DDLLYTFSGLSRKLNFI 199 (413)
Q Consensus 129 ~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~-~~i~~~f~~~~~~~nFI 199 (413)
..+|+++.... +.++-. . ++..+++. .+-||++.+.+.+.|-... .++..+|.+ +.+..++
T Consensus 201 ~~~v~yi~r~~--n~~~KA--g----nLN~al~~-a~gd~Il~lDAD~v~~pd~L~~~v~~f~~-dp~v~~V 262 (713)
T TIGR03030 201 KLGVNYITRPR--NVHAKA--G----NINNALKH-TDGELILIFDADHVPTRDFLQRTVGWFVE-DPKLFLV 262 (713)
T ss_pred HcCcEEEECCC--CCCCCh--H----HHHHHHHh-cCCCEEEEECCCCCcChhHHHHHHHHHHh-CCCEEEE
Confidence 23677664332 122211 1 12223332 2359999999999996432 344455533 3344444
No 29
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=65.04 E-value=61 Score=28.27 Aligned_cols=107 Identities=9% Similarity=0.023 Sum_probs=59.0
Q ss_pred EEEeeCCCHHHHHHHHHHHcCC----CCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccHHH
Q 015112 75 LVSGSKGDLEKLWRTLQALYHP----RNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVA 150 (413)
Q Consensus 75 LI~~hk~d~~~l~RLL~aLy~p----~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~ 150 (413)
+|.+|+ +.+.+.++|+.+..- .+.=+|-+|..+++...+.++.+.. ..+.++++.... ..+...
T Consensus 2 ii~~~n-~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~------~~~~~~~~~~~~-----n~G~~~ 69 (185)
T cd04179 2 VIPAYN-EEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAA------RVPRVRVIRLSR-----NFGKGA 69 (185)
T ss_pred eecccC-hHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHH------hCCCeEEEEccC-----CCCccH
Confidence 456666 678888888888422 2344666676666555555554432 234444442221 122334
Q ss_pred HHHHHHHHHHhCCCCCceEEeccCCcccccchhHHHHHHhc-cCCCcceEE
Q 015112 151 NTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFSG-LSRKLNFIE 200 (413)
Q Consensus 151 AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f~~-~~~~~nFIe 200 (413)
|.-.+++.+- + ||++.|.+.|.+ +.+.+...+.. ...+.+.+-
T Consensus 70 a~n~g~~~a~---g--d~i~~lD~D~~~--~~~~l~~l~~~~~~~~~~~v~ 113 (185)
T cd04179 70 AVRAGFKAAR---G--DIVVTMDADLQH--PPEDIPKLLEKLLEGGADVVI 113 (185)
T ss_pred HHHHHHHHhc---C--CEEEEEeCCCCC--CHHHHHHHHHHHhccCCcEEE
Confidence 4444444432 2 899999999875 55556555543 334455553
No 30
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=64.83 E-value=43 Score=37.74 Aligned_cols=122 Identities=11% Similarity=0.023 Sum_probs=68.2
Q ss_pred CCCCCcEEEEEEeeCCCHHHHHHHHH----HHcCCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCcccee
Q 015112 66 GPKIPRFAYLVSGSKGDLEKLWRTLQ----ALYHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMV 141 (413)
Q Consensus 66 ~~~~~kiAYLI~~hk~d~~~l~RLL~----aLy~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V 141 (413)
++.+++++.+|=+|+ +...+.++++ +++.|+-.+++=.|.+ ++.-.+.++.. ...+++|+++....
T Consensus 59 ~~~~~~vsIlVPa~n-E~~vi~~~i~~ll~~ldYP~~eI~vi~~~n-D~~T~~~~~~l------~~~~p~~~~v~~~~-- 128 (727)
T PRK11234 59 KPDEKPLAIMVPAWN-ETGVIGNMAELAATTLDYENYHIFVGTYPN-DPATQADVDAV------CARFPNVHKVVCAR-- 128 (727)
T ss_pred cCCCCCEEEEEecCc-chhhHHHHHHHHHHhCCCCCeEEEEEecCC-ChhHHHHHHHH------HHHCCCcEEEEeCC--
Confidence 345689999999998 6777766666 4577887777766633 22223333332 13467876543221
Q ss_pred eecCccHHHHHHHHHHHHHhC----CCCCceEEeccCCcccccchhHHHHHHhccCCCcceEEe
Q 015112 142 TYRGPTMVANTLHACAILLKN----SKDWDWFINLSASDYPLVTQDDLLYTFSGLSRKLNFIEH 201 (413)
Q Consensus 142 ~wgg~S~V~AtL~~~~~lL~~----~~~wdyfi~LSgsDyPLkt~~~i~~~f~~~~~~~nFIe~ 201 (413)
-|.-+...|--.++..+.+. +.+++.++.+-+.|.|=...=.+...+ ..+..++..
T Consensus 129 -~g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~~~~~l---~~~~~~VQ~ 188 (727)
T PRK11234 129 -PGPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELRLFNYL---VERKDLIQI 188 (727)
T ss_pred -CCCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHHHHHhh---cCCCCeEee
Confidence 12224455544444444321 346788888888887644433333333 223356554
No 31
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=63.79 E-value=76 Score=29.53 Aligned_cols=96 Identities=14% Similarity=0.177 Sum_probs=57.5
Q ss_pred cEEEEEEeeCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccHHH
Q 015112 71 RFAYLVSGSKGDLEKLWRTLQALYHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVA 150 (413)
Q Consensus 71 kiAYLI~~hk~d~~~l~RLL~aLy~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~ 150 (413)
++..+|.+++ +.+.+.++|+.|. +...=+|-+|..|++...+ +.+ ..++.++.. .|+|++.-.
T Consensus 1 ~isvii~~~N-e~~~l~~~l~sl~-~~~~eiivvD~gStD~t~~-i~~----------~~~~~v~~~----~~~g~~~~~ 63 (229)
T cd02511 1 TLSVVIITKN-EERNIERCLESVK-WAVDEIIVVDSGSTDRTVE-IAK----------EYGAKVYQR----WWDGFGAQR 63 (229)
T ss_pred CEEEEEEeCC-cHHHHHHHHHHHh-cccCEEEEEeCCCCccHHH-HHH----------HcCCEEEEC----CCCChHHHH
Confidence 3677888888 6889999999996 3322345578777665433 321 235566543 566764322
Q ss_pred HHHHHHHHHHhCCCCCceEEeccCCcccccc-hhHHHHHHh
Q 015112 151 NTLHACAILLKNSKDWDWFINLSASDYPLVT-QDDLLYTFS 190 (413)
Q Consensus 151 AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~~~i~~~f~ 190 (413)
. .+++. ..-||++.|-+.+.+-.. .+++.+.+.
T Consensus 64 n--~~~~~-----a~~d~vl~lDaD~~~~~~~~~~l~~~~~ 97 (229)
T cd02511 64 N--FALEL-----ATNDWVLSLDADERLTPELADEILALLA 97 (229)
T ss_pred H--HHHHh-----CCCCEEEEEeCCcCcCHHHHHHHHHHHh
Confidence 2 22222 224699999999986543 344555554
No 32
>PRK10073 putative glycosyl transferase; Provisional
Probab=57.41 E-value=95 Score=31.12 Aligned_cols=93 Identities=11% Similarity=0.071 Sum_probs=57.8
Q ss_pred CCcEEEEEEeeCCCHHHHHHHHHHHcCC--CCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCc
Q 015112 69 IPRFAYLVSGSKGDLEKLWRTLQALYHP--RNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGP 146 (413)
Q Consensus 69 ~~kiAYLI~~hk~d~~~l~RLL~aLy~p--~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~ 146 (413)
.|.+..+|-+++ ..+.|.+.|+.|... .+.=+|=+|-.|++...+-++.+.+ ..++|.++.+.+ +|.
T Consensus 5 ~p~vSVIIP~yN-~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~------~~~~i~vi~~~n----~G~ 73 (328)
T PRK10073 5 TPKLSIIIPLYN-AGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAE------NYPHVRLLHQAN----AGV 73 (328)
T ss_pred CCeEEEEEeccC-CHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHh------hCCCEEEEECCC----CCh
Confidence 367899999998 468999999998532 2333445555555554444444432 356888876432 343
Q ss_pred cHHHHHHHHHHHHHhCCCCCceEEeccCCcccc
Q 015112 147 TMVANTLHACAILLKNSKDWDWFINLSASDYPL 179 (413)
Q Consensus 147 S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL 179 (413)
..|--.+++.+ .=||+..+.+.|+..
T Consensus 74 --~~arN~gl~~a-----~g~yi~flD~DD~~~ 99 (328)
T PRK10073 74 --SVARNTGLAVA-----TGKYVAFPDADDVVY 99 (328)
T ss_pred --HHHHHHHHHhC-----CCCEEEEECCCCccC
Confidence 33333344432 238999999999964
No 33
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=56.86 E-value=1.1e+02 Score=25.76 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=52.2
Q ss_pred EEEeeCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccHHHH
Q 015112 75 LVSGSKGDLEKLWRTLQALYH---PRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVAN 151 (413)
Q Consensus 75 LI~~hk~d~~~l~RLL~aLy~---p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 151 (413)
+|.+++ ..+.+.++++.|.. +...++| +|..+.+...+.+... ..++.++.... ..+...|
T Consensus 2 ii~~~~-~~~~l~~~l~sl~~~~~~~~~iii-vdd~s~~~~~~~~~~~---------~~~~~~~~~~~-----~~g~~~a 65 (166)
T cd04186 2 IIVNYN-SLEYLKACLDSLLAQTYPDFEVIV-VDNASTDGSVELLREL---------FPEVRLIRNGE-----NLGFGAG 65 (166)
T ss_pred EEEecC-CHHHHHHHHHHHHhccCCCeEEEE-EECCCCchHHHHHHHh---------CCCeEEEecCC-----CcChHHH
Confidence 466777 68999999999953 3345555 5555555555544431 22566654321 1222334
Q ss_pred HHHHHHHHHhCCCCCceEEeccCCcccccchhHHHHHH
Q 015112 152 TLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTF 189 (413)
Q Consensus 152 tL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f 189 (413)
--.+++.+ +.+|++.+.+.+++- .+.+....
T Consensus 66 ~n~~~~~~-----~~~~i~~~D~D~~~~--~~~l~~~~ 96 (166)
T cd04186 66 NNQGIREA-----KGDYVLLLNPDTVVE--PGALLELL 96 (166)
T ss_pred hhHHHhhC-----CCCEEEEECCCcEEC--ccHHHHHH
Confidence 33344433 578999999988874 34444433
No 34
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=52.78 E-value=91 Score=31.13 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=16.6
Q ss_pred CCCcEEEEEEeeCCCHHHHHHHHHHH
Q 015112 68 KIPRFAYLVSGSKGDLEKLWRTLQAL 93 (413)
Q Consensus 68 ~~~kiAYLI~~hk~d~~~l~RLL~aL 93 (413)
..+.+|||+.|..|.......+.++|
T Consensus 21 ~rl~hAyLf~G~~G~~~~A~~~A~~l 46 (290)
T PRK07276 21 DRLNHAYLFSGDFASFEMALFLAQSL 46 (290)
T ss_pred CCcceeeeeeCCccHHHHHHHHHHHH
Confidence 35788999988776544334444555
No 35
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=50.95 E-value=4e+02 Score=30.02 Aligned_cols=125 Identities=13% Similarity=0.107 Sum_probs=64.8
Q ss_pred CCCCCCcEEEEEEeeCCCHH----HHHHHHHHHc---CCCCeEEEEEcCCCChHH----HHHHHhhhccCCCcccccceE
Q 015112 65 SGPKIPRFAYLVSGSKGDLE----KLWRTLQALY---HPRNRYVLHLDLEAPTEE----RLELASRVEKDPMFSKVGNVY 133 (413)
Q Consensus 65 ~~~~~~kiAYLI~~hk~d~~----~l~RLL~aLy---~p~n~y~IHlD~ks~~~~----~~~L~~~v~~~~~~~~~~NV~ 133 (413)
..+..++.+.+|-+|+.|++ .++..++.+. ++++..++-+|..+++.. ++.++...+.. ....+|+
T Consensus 119 ~~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~---~~~~~i~ 195 (691)
T PRK05454 119 PPPPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAEL---GGEGRIF 195 (691)
T ss_pred CCCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhc---CCCCcEE
Confidence 34566899999999997765 3455555442 344544555555444331 11222221111 1235777
Q ss_pred eeCccceeeecCccHHHHHHHHHHHHHhCCCCCceEEeccCCcccccc-hhHHHHHHhccCCCcceEE
Q 015112 134 MSTKANMVTYRGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVT-QDDLLYTFSGLSRKLNFIE 200 (413)
Q Consensus 134 vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~~~i~~~f~~~~~~~nFIe 200 (413)
+...... .|. ..- +....+-+.+.++||++.|-+...|-.. ..++...|.. +.+.-.|.
T Consensus 196 yr~R~~n---~~~-KaG---Nl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~-dP~vGlVQ 255 (691)
T PRK05454 196 YRRRRRN---VGR-KAG---NIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEA-NPRAGLIQ 255 (691)
T ss_pred EEECCcC---CCc-cHH---HHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhh-CcCEEEEe
Confidence 6543222 222 111 1111222335689999999998887643 4555555542 33444554
No 36
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=49.45 E-value=2e+02 Score=25.83 Aligned_cols=99 Identities=18% Similarity=0.156 Sum_probs=52.4
Q ss_pred EEEeeCCCHHHHHHHHHHHc---CCC--CeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccHH
Q 015112 75 LVSGSKGDLEKLWRTLQALY---HPR--NRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMV 149 (413)
Q Consensus 75 LI~~hk~d~~~l~RLL~aLy---~p~--n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V 149 (413)
+|.+++ +.+.+.++|++|. +|. ..++|.-|. +++...+.++ +... ...++|.++.... ...+| ..
T Consensus 2 iip~~n-~~~~l~~~l~sl~~q~~~~~~~eiivvdd~-s~d~t~~~~~-~~~~----~~~~~v~~~~~~~-~~~~g--~~ 71 (229)
T cd04192 2 VIAARN-EAENLPRLLQSLSALDYPKEKFEVILVDDH-STDGTVQILE-FAAA----KPNFQLKILNNSR-VSISG--KK 71 (229)
T ss_pred EEEecC-cHHHHHHHHHHHHhCCCCCCceEEEEEcCC-CCcChHHHHH-HHHh----CCCcceEEeeccC-cccch--hH
Confidence 455666 7899999999883 344 355555454 4443333333 2111 1245676665332 11222 22
Q ss_pred HHHHHHHHHHHhCCCCCceEEeccCCcccccchhHHHHHHh
Q 015112 150 ANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFS 190 (413)
Q Consensus 150 ~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f~ 190 (413)
.|--.+++. ..-||++.+.+.+.+ ..+.|.+.+.
T Consensus 72 ~a~n~g~~~-----~~~d~i~~~D~D~~~--~~~~l~~l~~ 105 (229)
T cd04192 72 NALTTAIKA-----AKGDWIVTTDADCVV--PSNWLLTFVA 105 (229)
T ss_pred HHHHHHHHH-----hcCCEEEEECCCccc--CHHHHHHHHH
Confidence 232222222 235999999999977 3455555443
No 37
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=48.87 E-value=94 Score=31.07 Aligned_cols=14 Identities=14% Similarity=0.071 Sum_probs=10.9
Q ss_pred CCCcEEEEEEeeCC
Q 015112 68 KIPRFAYLVSGSKG 81 (413)
Q Consensus 68 ~~~kiAYLI~~hk~ 81 (413)
..+.||||+.|..|
T Consensus 16 ~rl~HAyLf~G~~G 29 (290)
T PRK05917 16 QKVPSAIILHGQDL 29 (290)
T ss_pred CCcCeeEeeECCCC
Confidence 35789999988765
No 38
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=47.47 E-value=2.4e+02 Score=26.28 Aligned_cols=107 Identities=7% Similarity=0.040 Sum_probs=58.9
Q ss_pred CCCCcEEEEEEeeCCCHHHHHHHHHHH----cCCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceee
Q 015112 67 PKIPRFAYLVSGSKGDLEKLWRTLQAL----YHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVT 142 (413)
Q Consensus 67 ~~~~kiAYLI~~hk~d~~~l~RLL~aL----y~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~ 142 (413)
+..|++..+|-+++ ..+.+..+++.+ ....+.=+|-+|-.|++...+.++++.+.. ...+|.++....
T Consensus 6 ~~~~~vsVvIp~yn-e~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~----~~~~v~~~~~~~--- 77 (243)
T PLN02726 6 EGAMKYSIIVPTYN-ERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVY----GEDRILLRPRPG--- 77 (243)
T ss_pred CCCceEEEEEccCC-chhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhc----CCCcEEEEecCC---
Confidence 34578999999988 577777766655 223244466777777665544444332210 123565553211
Q ss_pred ecCccHHHHHHHHHHHHHhCCCCCceEEeccCCcccccchhHHHHHHh
Q 015112 143 YRGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFS 190 (413)
Q Consensus 143 wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f~ 190 (413)
-.|.+ .|...+++.+ .-||++.+.+.+.+ +.+.|...+.
T Consensus 78 n~G~~--~a~n~g~~~a-----~g~~i~~lD~D~~~--~~~~l~~l~~ 116 (243)
T PLN02726 78 KLGLG--TAYIHGLKHA-----SGDFVVIMDADLSH--HPKYLPSFIK 116 (243)
T ss_pred CCCHH--HHHHHHHHHc-----CCCEEEEEcCCCCC--CHHHHHHHHH
Confidence 12222 2333333332 34899999998874 5555555443
No 39
>PF07747 MTH865: MTH865-like family; InterPro: IPR024093 This entry represents a group of uncharacterised hypothetical proteins from archaea, including the 8.4 kDa protein MTH865 from Methanobacterium thermoautotrophicum. The NMR structure of MTH865 reveals an EF-Hand-like fold consisting of four helices in two hairpins [].; PDB: 1IIO_A.
Probab=45.14 E-value=12 Score=29.85 Aligned_cols=22 Identities=18% Similarity=0.461 Sum_probs=16.9
Q ss_pred ccCCcccccchhHHHHHHhccCCCc
Q 015112 172 LSASDYPLVTQDDLLYTFSGLSRKL 196 (413)
Q Consensus 172 LSgsDyPLkt~~~i~~~f~~~~~~~ 196 (413)
+.|.|||++|+.||...| |.|.
T Consensus 11 ~~~a~FPI~s~~eL~~al---P~G~ 32 (75)
T PF07747_consen 11 FKGADFPIKSPMELLPAL---PKGP 32 (75)
T ss_dssp HTTSSSTTBHHHHHHHH----TTSS
T ss_pred HhcCCCCCCCHHHHHHhC---CCCC
Confidence 357899999999999877 5453
No 40
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=44.91 E-value=2e+02 Score=27.85 Aligned_cols=99 Identities=12% Similarity=0.058 Sum_probs=59.1
Q ss_pred EEEEeeCCCH-HHHHHHHHHHcC---CC-CeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccH
Q 015112 74 YLVSGSKGDL-EKLWRTLQALYH---PR-NRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTM 148 (413)
Q Consensus 74 YLI~~hk~d~-~~l~RLL~aLy~---p~-n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~ 148 (413)
.+|.++. .. +.+.++|+.|.. +. ..=+|-||..|++.....+.+... ....++|+++..... .| .
T Consensus 2 IIIp~~N-~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~----~~~~~~v~vi~~~~n---~G--~ 71 (299)
T cd02510 2 VIIIFHN-EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYY----KKYLPKVKVLRLKKR---EG--L 71 (299)
T ss_pred EEEEEec-CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHH----hhcCCcEEEEEcCCC---CC--H
Confidence 3566777 56 899999999853 22 135888998887665554432111 124568888753221 23 3
Q ss_pred HHHHHHHHHHHHhCCCCCceEEeccCCcccccchhHHHHHH
Q 015112 149 VANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTF 189 (413)
Q Consensus 149 V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f 189 (413)
..|--.+++.+ .-||++.|.+.+.+ +.+-|...+
T Consensus 72 ~~a~N~g~~~A-----~gd~i~fLD~D~~~--~~~wL~~ll 105 (299)
T cd02510 72 IRARIAGARAA-----TGDVLVFLDSHCEV--NVGWLEPLL 105 (299)
T ss_pred HHHHHHHHHHc-----cCCEEEEEeCCccc--CccHHHHHH
Confidence 34444444443 24899999999987 455454444
No 41
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=44.45 E-value=1.5e+02 Score=33.48 Aligned_cols=119 Identities=8% Similarity=0.015 Sum_probs=65.5
Q ss_pred CCCcEEEEEEeeCCCHHHHHHHHHH----HcCCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeee
Q 015112 68 KIPRFAYLVSGSKGDLEKLWRTLQA----LYHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTY 143 (413)
Q Consensus 68 ~~~kiAYLI~~hk~d~~~l~RLL~a----Ly~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~w 143 (413)
..++++.+|=+|+ +.+.+.+++++ |++|+-.++|-.+.+-. +-.++++... ..++++++|..+..
T Consensus 69 ~~~~vsIlVPa~n-E~~VI~~~v~~ll~~ldYp~~~I~v~~~~nD~-~T~~~~~~~~------~~~p~~~~v~~~~~--- 137 (703)
T PRK15489 69 DEQPLAIMVPAWK-EYDVIAKMIENMLATLDYRRYVIFVGTYPNDA-ETITEVERMR------RRYKRLVRVEVPHD--- 137 (703)
T ss_pred CCCceEEEEeCCC-cHHHHHHHHHHHHhcCCCCCeEEEEEecCCCc-cHHHHHHHHh------ccCCcEEEEEcCCC---
Confidence 4568999999999 78888888886 36786554443322211 1122333221 24567776653221
Q ss_pred cCccHHHHHHHHHHHHHh----CCCCCceEEeccCCcccccchhHHHHHHhccCCCcceEE
Q 015112 144 RGPTMVANTLHACAILLK----NSKDWDWFINLSASDYPLVTQDDLLYTFSGLSRKLNFIE 200 (413)
Q Consensus 144 gg~S~V~AtL~~~~~lL~----~~~~wdyfi~LSgsDyPLkt~~~i~~~f~~~~~~~nFIe 200 (413)
|.-+.-.|-=.++..+++ .+..++.++..-+.|.|=-.+-....++. .+..+|.
T Consensus 138 gp~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~~~~~---~~~~~iQ 195 (703)
T PRK15489 138 GPTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYFNYLL---PRKDLVQ 195 (703)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHHHhhc---CCcceee
Confidence 222333333333333322 24567789999999988655444434332 2335666
No 42
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=44.20 E-value=1.8e+02 Score=23.99 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=50.5
Q ss_pred EEEeeCCCHHHHHHHHHHHcCC---CCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccHHHH
Q 015112 75 LVSGSKGDLEKLWRTLQALYHP---RNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVAN 151 (413)
Q Consensus 75 LI~~hk~d~~~l~RLL~aLy~p---~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 151 (413)
+|.+++ ..+.+.++|+.+... ...++| +|-.+++...+.+..+... ...++.++... ...| ...|
T Consensus 2 iip~~n-~~~~l~~~l~sl~~q~~~~~~iiv-vdd~s~d~t~~~~~~~~~~-----~~~~~~~~~~~---~~~g--~~~~ 69 (180)
T cd06423 2 IVPAYN-EEAVIERTIESLLALDYPKLEVIV-VDDGSTDDTLEILEELAAL-----YIRRVLVVRDK---ENGG--KAGA 69 (180)
T ss_pred eecccC-hHHHHHHHHHHHHhCCCCceEEEE-EeCCCccchHHHHHHHhcc-----ccceEEEEEec---ccCC--chHH
Confidence 455666 679999999998643 345555 5555554444444432211 01234433221 1122 3333
Q ss_pred HHHHHHHHHhCCCCCceEEeccCCcccccchhHHHHH
Q 015112 152 TLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYT 188 (413)
Q Consensus 152 tL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~ 188 (413)
--.+++.+ .-+|++.+.+.|++ +.+.|...
T Consensus 70 ~n~~~~~~-----~~~~i~~~D~D~~~--~~~~l~~~ 99 (180)
T cd06423 70 LNAGLRHA-----KGDIVVVLDADTIL--EPDALKRL 99 (180)
T ss_pred HHHHHHhc-----CCCEEEEECCCCCc--ChHHHHHH
Confidence 33333332 56899999999877 44555544
No 43
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=43.60 E-value=2e+02 Score=26.63 Aligned_cols=104 Identities=20% Similarity=0.123 Sum_probs=55.8
Q ss_pred CcEEEEEEeeCCCHHHHHHHHHHHcC---CCC-eEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecC
Q 015112 70 PRFAYLVSGSKGDLEKLWRTLQALYH---PRN-RYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRG 145 (413)
Q Consensus 70 ~kiAYLI~~hk~d~~~l~RLL~aLy~---p~n-~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg 145 (413)
|.+..+|-++. ..+.+.++|+.+.. |.. .=+|-||..+++...+.++.+.. ....+|.++... ...|
T Consensus 1 p~vsIiIp~~N-e~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~-----~~~~~i~~~~~~---~~~G 71 (241)
T cd06427 1 PVYTILVPLYK-EAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRL-----PSIFRVVVVPPS---QPRT 71 (241)
T ss_pred CeEEEEEecCC-cHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhcc-----CCCeeEEEecCC---CCCc
Confidence 46788899988 57899999999842 322 22555666666554444443210 011234433321 2223
Q ss_pred ccHHHHHHHHHHHHHhCCCCCceEEeccCCcccccc-hhHHHHHH
Q 015112 146 PTMVANTLHACAILLKNSKDWDWFINLSASDYPLVT-QDDLLYTF 189 (413)
Q Consensus 146 ~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~~~i~~~f 189 (413)
.+ .|--.+++. ..-||++.+.+.|.+-.. ..++...|
T Consensus 72 ~~--~a~n~g~~~-----a~gd~i~~~DaD~~~~~~~l~~~~~~~ 109 (241)
T cd06427 72 KP--KACNYALAF-----ARGEYVVIYDAEDAPDPDQLKKAVAAF 109 (241)
T ss_pred hH--HHHHHHHHh-----cCCCEEEEEcCCCCCChHHHHHHHHHH
Confidence 22 232223332 235899999999885433 22444444
No 44
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=43.57 E-value=2.1e+02 Score=25.39 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=50.4
Q ss_pred EEEeeCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccHHHH
Q 015112 75 LVSGSKGDLEKLWRTLQALYH---PRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVAN 151 (413)
Q Consensus 75 LI~~hk~d~~~l~RLL~aLy~---p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 151 (413)
+|.+++ ..+.+.++|+.|.. |... +|=+|..+++...+.+++.. ...++.++.... .-|....+.
T Consensus 2 iI~~~n-~~~~l~~~l~sl~~q~~~~~e-iiivD~~s~d~t~~~~~~~~-------~~~~i~~~~~~~--n~g~~~~~n- 69 (202)
T cd04185 2 VVVTYN-RLDLLKECLDALLAQTRPPDH-IIVIDNASTDGTAEWLTSLG-------DLDNIVYLRLPE--NLGGAGGFY- 69 (202)
T ss_pred EEEeeC-CHHHHHHHHHHHHhccCCCce-EEEEECCCCcchHHHHHHhc-------CCCceEEEECcc--ccchhhHHH-
Confidence 567777 57889999999953 2233 56667777665555444321 112255543221 223222222
Q ss_pred HHHHHHHHHhCCCCCceEEeccCCcccc
Q 015112 152 TLHACAILLKNSKDWDWFINLSASDYPL 179 (413)
Q Consensus 152 tL~~~~~lL~~~~~wdyfi~LSgsDyPL 179 (413)
.++..+. ..+.||++.+.+.+.+-
T Consensus 70 --~~~~~a~--~~~~d~v~~ld~D~~~~ 93 (202)
T cd04185 70 --EGVRRAY--ELGYDWIWLMDDDAIPD 93 (202)
T ss_pred --HHHHHHh--ccCCCEEEEeCCCCCcC
Confidence 2333343 24579999999888875
No 45
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=41.97 E-value=1.8e+02 Score=23.31 Aligned_cols=90 Identities=17% Similarity=0.109 Sum_probs=48.7
Q ss_pred EEEeeCCCHHHHHHHHHHHcCCC--CeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccHHHHH
Q 015112 75 LVSGSKGDLEKLWRTLQALYHPR--NRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVANT 152 (413)
Q Consensus 75 LI~~hk~d~~~l~RLL~aLy~p~--n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~At 152 (413)
+|.+++ ..+.+.++++++.... +.-++-+|..+++.....+....+. ..++..+ ...+..+...+-
T Consensus 2 ii~~~~-~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~~~~~-----~~~~~~g~~~~~ 69 (156)
T cd00761 2 IIPAYN-EEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK------DPRVIRV-----INEENQGLAAAR 69 (156)
T ss_pred EEeecC-cHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc------CCCeEEE-----EecCCCChHHHH
Confidence 456666 5789999999985433 4445557766655544444432210 1112221 122333444444
Q ss_pred HHHHHHHHhCCCCCceEEeccCCcccccc
Q 015112 153 LHACAILLKNSKDWDWFINLSASDYPLVT 181 (413)
Q Consensus 153 L~~~~~lL~~~~~wdyfi~LSgsDyPLkt 181 (413)
-.++..+ +.||++.+.+.+.+...
T Consensus 70 ~~~~~~~-----~~d~v~~~d~D~~~~~~ 93 (156)
T cd00761 70 NAGLKAA-----RGEYILFLDADDLLLPD 93 (156)
T ss_pred HHHHHHh-----cCCEEEEECCCCccCcc
Confidence 4444443 47899999887776443
No 46
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=41.22 E-value=2.5e+02 Score=24.77 Aligned_cols=99 Identities=15% Similarity=0.100 Sum_probs=55.0
Q ss_pred EEEEeeCCCHHHHHHHHHHHcCCC--CeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccHHHH
Q 015112 74 YLVSGSKGDLEKLWRTLQALYHPR--NRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVAN 151 (413)
Q Consensus 74 YLI~~hk~d~~~l~RLL~aLy~p~--n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 151 (413)
.+|-+++ ..+.|.++|+.+.... ..=+|=+|..+++...+.++.+.+..+ .++.++.. -++.+...+
T Consensus 2 IvIp~yn-~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~-----~~~~~~~~-----~~~~G~~~~ 70 (214)
T cd04196 2 VLMATYN-GEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDP-----FIIILIRN-----GKNLGVARN 70 (214)
T ss_pred EEEEecC-cHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCC-----ceEEEEeC-----CCCccHHHH
Confidence 3566777 5788999998885321 233555676666655555554433211 23444332 223344444
Q ss_pred HHHHHHHHHhCCCCCceEEeccCCcccccchhHHHHHHh
Q 015112 152 TLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFS 190 (413)
Q Consensus 152 tL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f~ 190 (413)
.-.+++ . ...+|++.|.+.|++. .+.|.+.+.
T Consensus 71 ~n~g~~----~-~~g~~v~~ld~Dd~~~--~~~l~~~~~ 102 (214)
T cd04196 71 FESLLQ----A-ADGDYVFFCDQDDIWL--PDKLERLLK 102 (214)
T ss_pred HHHHHH----h-CCCCEEEEECCCcccC--hhHHHHHHH
Confidence 433322 2 3479999999998875 344444443
No 47
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=40.97 E-value=1.4e+02 Score=29.44 Aligned_cols=33 Identities=9% Similarity=0.068 Sum_probs=17.9
Q ss_pred ecCccHHHHHHHHHHHHHhCCCCCceEEeccCC
Q 015112 143 YRGPTMVANTLHACAILLKNSKDWDWFINLSAS 175 (413)
Q Consensus 143 wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgs 175 (413)
|..-.|-.+.-+++--.|.++++..+||++|.+
T Consensus 95 ~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~ 127 (261)
T PRK05818 95 YGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRN 127 (261)
T ss_pred ccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECC
Confidence 333344444444444455566667777777654
No 48
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=40.35 E-value=2.3e+02 Score=25.68 Aligned_cols=104 Identities=8% Similarity=-0.066 Sum_probs=56.6
Q ss_pred EEEeeCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccHHHH
Q 015112 75 LVSGSKGDLEKLWRTLQALYH---PRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVAN 151 (413)
Q Consensus 75 LI~~hk~d~~~l~RLL~aLy~---p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 151 (413)
+|.+++ ..+.|.++|+.|.. |++.=+|-+|..+++...+.++.+.+.. ...+++++.....-. .+.+.-.|
T Consensus 2 iIp~yn-~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~----~~~~~~~~~~~~~~~-~~~G~~~a 75 (219)
T cd06913 2 ILPVHN-GEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKL----EDSGVIVLVGSHNSP-SPKGVGYA 75 (219)
T ss_pred EEeecC-cHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhC----cccCeEEEEecccCC-CCccHHHH
Confidence 566777 57899999999953 3344577788877665544455443211 123555442111011 11233333
Q ss_pred HHHHHHHHHhCCCCCceEEeccCCcccccc-hhHHHHHH
Q 015112 152 TLHACAILLKNSKDWDWFINLSASDYPLVT-QDDLLYTF 189 (413)
Q Consensus 152 tL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~~~i~~~f 189 (413)
.-.+++.+ .-||++.|.+.|++.-. .+.+...+
T Consensus 76 ~N~g~~~a-----~gd~i~~lD~D~~~~~~~l~~~~~~~ 109 (219)
T cd06913 76 KNQAIAQS-----SGRYLCFLDSDDVMMPQRIRLQYEAA 109 (219)
T ss_pred HHHHHHhc-----CCCEEEEECCCccCChhHHHHHHHHH
Confidence 33333332 34899999999986543 23344444
No 49
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=38.46 E-value=2.6e+02 Score=27.56 Aligned_cols=99 Identities=12% Similarity=0.163 Sum_probs=46.6
Q ss_pred CCCcEEEEEEeeCCCH--HHHHHHHH-HH--------cCCCCeEEEEEcCC-------CChHHHHHHHhhhccCCCcccc
Q 015112 68 KIPRFAYLVSGSKGDL--EKLWRTLQ-AL--------YHPRNRYVLHLDLE-------APTEERLELASRVEKDPMFSKV 129 (413)
Q Consensus 68 ~~~kiAYLI~~hk~d~--~~l~RLL~-aL--------y~p~n~y~IHlD~k-------s~~~~~~~L~~~v~~~~~~~~~ 129 (413)
..+.+|||+.|..++. ..++.++. .+ .||+-+ +|--+.+ -+.++-.+|...+...|.. ..
T Consensus 12 ~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~-~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~-g~ 89 (263)
T PRK06581 12 NKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYH-FIARETSATSNAKNISIEQIRKLQDFLSKTSAI-SG 89 (263)
T ss_pred CcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEE-EEeccccccccCCcccHHHHHHHHHHHhhCccc-CC
Confidence 4578999999866321 12222222 22 356533 3322221 1233334454444322221 12
Q ss_pred cceEeeCccceeeecCccHHHHHHHHHHHHHhCCCCCceEEeccCC
Q 015112 130 GNVYMSTKANMVTYRGPTMVANTLHACAILLKNSKDWDWFINLSAS 175 (413)
Q Consensus 130 ~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgs 175 (413)
..|.++.. .-.|-.+.-+++--.|.++++..+|++++.+
T Consensus 90 ~KViII~~-------ae~mt~~AANALLKtLEEPP~~t~fILit~~ 128 (263)
T PRK06581 90 YKVAIIYS-------AELMNLNAANSCLKILEDAPKNSYIFLITSR 128 (263)
T ss_pred cEEEEEec-------hHHhCHHHHHHHHHhhcCCCCCeEEEEEeCC
Confidence 34444433 3333333334444455567777888887766
No 50
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=37.10 E-value=3.1e+02 Score=24.58 Aligned_cols=96 Identities=9% Similarity=0.069 Sum_probs=52.8
Q ss_pred EEEeeCCCHHHHHHHHHHHcCC---CCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccHHHH
Q 015112 75 LVSGSKGDLEKLWRTLQALYHP---RNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVAN 151 (413)
Q Consensus 75 LI~~hk~d~~~l~RLL~aLy~p---~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 151 (413)
+|.+++ ..+.|.++|+.+..- .+.=+|=||-.+++...+.++.+.+ ..++|.++... .-+|.+ .|
T Consensus 2 iIp~yn-~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~------~~~~i~~~~~~---~n~G~~--~a 69 (224)
T cd06442 2 IIPTYN-ERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAK------EYPRVRLIVRP---GKRGLG--SA 69 (224)
T ss_pred eEeccc-hhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHH------hCCceEEEecC---CCCChH--HH
Confidence 566777 578889988888632 2333555676665544444443332 34556555321 123432 34
Q ss_pred HHHHHHHHHhCCCCCceEEeccCCcccccchhHHHHHH
Q 015112 152 TLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTF 189 (413)
Q Consensus 152 tL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f 189 (413)
--.+++.+. -||++.|.+.|.+ +.+.|...+
T Consensus 70 ~n~g~~~a~-----gd~i~~lD~D~~~--~~~~l~~l~ 100 (224)
T cd06442 70 YIEGFKAAR-----GDVIVVMDADLSH--PPEYIPELL 100 (224)
T ss_pred HHHHHHHcC-----CCEEEEEECCCCC--CHHHHHHHH
Confidence 344444432 2899999888876 344444444
No 51
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=36.38 E-value=3e+02 Score=27.65 Aligned_cols=98 Identities=20% Similarity=0.224 Sum_probs=47.2
Q ss_pred CCCcEEEEEEeeCCCH--HHHHHHHHHHc-----------------------CCCCeEEEEEcCC-CChHHHHHHHhhhc
Q 015112 68 KIPRFAYLVSGSKGDL--EKLWRTLQALY-----------------------HPRNRYVLHLDLE-APTEERLELASRVE 121 (413)
Q Consensus 68 ~~~kiAYLI~~hk~d~--~~l~RLL~aLy-----------------------~p~n~y~IHlD~k-s~~~~~~~L~~~v~ 121 (413)
..+.+|||+.|..|-. .....+.+++. ||+- +++-.|.+ .+.++-.++...+.
T Consensus 25 ~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~-~~i~~~~~~i~id~ir~l~~~~~ 103 (329)
T PRK08058 25 NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV-HLVAPDGQSIKKDQIRYLKEEFS 103 (329)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE-EEeccccccCCHHHHHHHHHHHh
Confidence 4578899999877632 23344445553 5543 23333433 22222223332222
Q ss_pred cCCCcccccceEeeCccceeeecCccHHHHHHHHHHHHHhCCCCCceEEeccC
Q 015112 122 KDPMFSKVGNVYMSTKANMVTYRGPTMVANTLHACAILLKNSKDWDWFINLSA 174 (413)
Q Consensus 122 ~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSg 174 (413)
..+.. ....|.++.+.. .|-....+++-..++++++.-+||+++.
T Consensus 104 ~~~~~-~~~kvviI~~a~-------~~~~~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 104 KSGVE-SNKKVYIIEHAD-------KMTASAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred hCCcc-cCceEEEeehHh-------hhCHHHHHHHHHHhcCCCCCceEEEEeC
Confidence 22222 223566665432 2223333444445556677777887665
No 52
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.69 E-value=78 Score=26.91 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=56.8
Q ss_pred CccChhhHHHHh-------cCCceEEe--ccC-CCHHHHHHHHHHHhCCCCCCCCCC--ccccCC-CCCCCCCCCCcccC
Q 015112 321 HILSLNDTSEMI-------SSSAAFAR--KFR-QNALVLDKIDKELLGRKNGSFTPG--AWCSGD-PHCSKVGDPNKIKP 387 (413)
Q Consensus 321 ~~l~~~D~~~l~-------~S~alFAR--KF~-~d~~vLd~Id~~ll~r~~~~~~~g--~w~~~~-~~c~~~~~~~~~~~ 387 (413)
..|+.+|...|. +.|.+|.- |.. ..++|+-. -+|+.+...-+++| .||.-. .+-...|-.-.+.-
T Consensus 12 lSL~lKD~a~LYsaYMpfl~nGglFVpTnk~y~iG~evfl~--l~lld~pekl~vagkVaWitP~gt~sr~~GiGv~f~d 89 (117)
T COG3215 12 LSLTLKDMALLYSAYMPFLENGGLFVPTNKVYSIGEEVFLL--LELLDFPEKLPVAGKVAWITPVGTQSRPAGIGVQFTD 89 (117)
T ss_pred eEEEehhHHHHHHHHhHHHhcCcEEcccCCccccchhhhhh--hhhcCchhhccccceEEEEccCCCCCCCCceeeeccC
Confidence 356677766554 46888874 222 25666533 36777776778899 999865 44555666667888
Q ss_pred CchhHHHHHHHHHhhc
Q 015112 388 GPGAERLRRLVARLTM 403 (413)
Q Consensus 388 ~~~~~~~~~~~~~~~~ 403 (413)
|+++.+++.-|..+|.
T Consensus 90 ~e~g~~vr~~IE~~Lg 105 (117)
T COG3215 90 GENGLKVRNQIETLLG 105 (117)
T ss_pred CCchhhHHHHHHHHHH
Confidence 9999999999988886
No 53
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=35.17 E-value=3.1e+02 Score=24.09 Aligned_cols=90 Identities=19% Similarity=0.192 Sum_probs=48.1
Q ss_pred EEEEeeCCC-HHHHHHHHHHHcC---CCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccHH
Q 015112 74 YLVSGSKGD-LEKLWRTLQALYH---PRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMV 149 (413)
Q Consensus 74 YLI~~hk~d-~~~l~RLL~aLy~---p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V 149 (413)
.+|-++.++ .+.+.++|+.+.. +...++|--|..+++...+.++.+.+ .+ ++.++..... .| ..
T Consensus 2 viip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~------~~-~i~~i~~~~n---~G--~~ 69 (201)
T cd04195 2 VLMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKR------KL-PLKVVPLEKN---RG--LG 69 (201)
T ss_pred EEEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHh------cC-CeEEEEcCcc---cc--HH
Confidence 356666543 4689999999853 44455554455445544443443332 22 3655542211 12 22
Q ss_pred HHHHHHHHHHHhCCCCCceEEeccCCccccc
Q 015112 150 ANTLHACAILLKNSKDWDWFINLSASDYPLV 180 (413)
Q Consensus 150 ~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLk 180 (413)
.|--.|++. .+-||++.+.+.|++..
T Consensus 70 ~a~N~g~~~-----a~gd~i~~lD~Dd~~~~ 95 (201)
T cd04195 70 KALNEGLKH-----CTYDWVARMDTDDISLP 95 (201)
T ss_pred HHHHHHHHh-----cCCCEEEEeCCccccCc
Confidence 333333332 24689999999998764
No 54
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.96 E-value=23 Score=28.28 Aligned_cols=17 Identities=18% Similarity=0.620 Sum_probs=15.1
Q ss_pred cCCcccccchhHHHHHH
Q 015112 173 SASDYPLVTQDDLLYTF 189 (413)
Q Consensus 173 SgsDyPLkt~~~i~~~f 189 (413)
-|.|||++++.+|...|
T Consensus 17 k~a~fPInn~~eL~~AL 33 (80)
T COG4746 17 KGADFPINNPEELVAAL 33 (80)
T ss_pred ccCCCCCCCHHHHHHhc
Confidence 37999999999999876
No 55
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=32.82 E-value=1.5e+02 Score=28.96 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=54.5
Q ss_pred EEEEeeCCCHHHHHHHHHHHcCCCCeE---EEEEc-CCCChHHHHHHHhhhccCCCcccccceEee-------Cccce--
Q 015112 74 YLVSGSKGDLEKLWRTLQALYHPRNRY---VLHLD-LEAPTEERLELASRVEKDPMFSKVGNVYMS-------TKANM-- 140 (413)
Q Consensus 74 YLI~~hk~d~~~l~RLL~aLy~p~n~y---~IHlD-~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv-------~~~~~-- 140 (413)
.+|+++.....+..++|+.|.+=+|.. ++|-. .+-+...+++|.. ..+|.++ .+...
T Consensus 4 IVi~~g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~~~dl~~~~~~~l~~----------~q~v~~vd~~~~~~~~~~~~~ 73 (271)
T PF11051_consen 4 IVITAGDKYLWLALRLIRVLRRLGNTLPIEIIYPGDDDLSKEFCEKLLP----------DQDVWFVDASCVIDPDYLGKS 73 (271)
T ss_pred EEEEecCccHHHHHHHHHHHHHhCCCCCEEEEeCCccccCHHHHHHHhh----------hhhhheecceEEeeccccccc
Confidence 456666656777778888887766643 33432 4445666666653 1122211 11111
Q ss_pred eeecCccHHHHHHHHHHHHHhCCCCCceEEeccCCcccccchhHH
Q 015112 141 VTYRGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDL 185 (413)
Q Consensus 141 V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i 185 (413)
+...|+ .+..++.+. ..++-+++|-+..+|+++.+.+
T Consensus 74 ~~~~~~-----~~K~lA~l~---ssFeevllLDaD~vpl~~p~~l 110 (271)
T PF11051_consen 74 FSKKGF-----QNKWLALLF---SSFEEVLLLDADNVPLVDPEKL 110 (271)
T ss_pred cccCCc-----hhhhhhhhh---CCcceEEEEcCCcccccCHHHH
Confidence 111132 234444554 4589999999999999999876
No 56
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=32.50 E-value=4.2e+02 Score=25.10 Aligned_cols=113 Identities=20% Similarity=0.140 Sum_probs=63.9
Q ss_pred EEEEEEeeCCCHHHHHHHHHHH---cCCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccH
Q 015112 72 FAYLVSGSKGDLEKLWRTLQAL---YHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTM 148 (413)
Q Consensus 72 iAYLI~~hk~d~~~l~RLL~aL---y~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~ 148 (413)
.-++++|++|-...+.||++++ |.|+.++ --|.+. -..+..+.+... .......|..|.. ...|.=.-.|-
T Consensus 40 ~~lVvlGSGGHT~EMlrLl~~l~~~y~~r~yI--~a~tD~--mS~~k~~~F~~~-~a~~~a~~~~ipR-sReVgQS~ltS 113 (211)
T KOG3339|consen 40 STLVVLGSGGHTGEMLRLLEALQDLYSPRSYI--AADTDE--MSEQKARSFELS-LAHCKAKNYEIPR-SREVGQSWLTS 113 (211)
T ss_pred eEEEEEcCCCcHHHHHHHHHHHHhhcCceEEE--EecCch--hhHHHHHhhhcc-ccccchhheecch-hhhhhhhhhhh
Confidence 5688888888888999999988 5665554 222221 112222222211 1122344555443 33455444566
Q ss_pred HHHHHHHHHHHHhC--CCCCceEEecc-CCcccccchhHHHHHHh
Q 015112 149 VANTLHACAILLKN--SKDWDWFINLS-ASDYPLVTQDDLLYTFS 190 (413)
Q Consensus 149 V~AtL~~~~~lL~~--~~~wdyfi~LS-gsDyPLkt~~~i~~~f~ 190 (413)
|-.++.++...+.. ...-|-+.+.- |.|.|+-=-..+.+++-
T Consensus 114 v~Tti~all~s~~lv~RirPdlil~NGPGTCv~i~~~a~l~~iL~ 158 (211)
T KOG3339|consen 114 VFTTIWALLQSFVLVWRIRPDLILCNGPGTCVPICLSAYLMEILG 158 (211)
T ss_pred HHHHHHHHHHHheEEEecCCCEEEECCCCcEeHHHHHHHHHHHhC
Confidence 77777776665532 12234444444 79999988887777763
No 57
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=31.67 E-value=40 Score=29.26 Aligned_cols=18 Identities=33% Similarity=0.676 Sum_probs=9.2
Q ss_pred cchhHHHHHHHHHHHHHH
Q 015112 4 KWVFPLVISSLICVFLLA 21 (413)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (413)
||++-+++..++.|+|++
T Consensus 1 RW~l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFL 18 (130)
T ss_pred CeeeHHHHHHHHHHHHHH
Confidence 687655544444444333
No 58
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=31.37 E-value=5.4e+02 Score=25.66 Aligned_cols=110 Identities=10% Similarity=0.053 Sum_probs=61.4
Q ss_pred CCCcEEEEEEeeCCCHHHHHHHHHHHc-----CCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceee
Q 015112 68 KIPRFAYLVSGSKGDLEKLWRTLQALY-----HPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVT 142 (413)
Q Consensus 68 ~~~kiAYLI~~hk~d~~~l~RLL~aLy-----~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~ 142 (413)
+.+++..+|-+++ +.+.+.++++++. .+.+.=+|=+|..|++...+.+++..+. ...+|..+..
T Consensus 4 ~~~~vSVVIP~yN-E~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~-----~~~~v~~i~~----- 72 (325)
T PRK10714 4 PIKKVSVVIPVYN-EQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQA-----PDSHIVAILL----- 72 (325)
T ss_pred CCCeEEEEEcccC-chhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhh-----cCCcEEEEEe-----
Confidence 4567899999998 6677777776652 1223335666776666555544433211 1234543321
Q ss_pred ecCccHHHHHHHHHHHHHhCCCCCceEEeccCCcccccchhHHHHHHhccCCC
Q 015112 143 YRGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFSGLSRK 195 (413)
Q Consensus 143 wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f~~~~~~ 195 (413)
-.++..-.|...+++.+ +-||++.+.+.+-. +.++|.+.+..+..+
T Consensus 73 ~~n~G~~~A~~~G~~~A-----~gd~vv~~DaD~q~--~p~~i~~l~~~~~~~ 118 (325)
T PRK10714 73 NRNYGQHSAIMAGFSHV-----TGDLIITLDADLQN--PPEEIPRLVAKADEG 118 (325)
T ss_pred CCCCCHHHHHHHHHHhC-----CCCEEEEECCCCCC--CHHHHHHHHHHHHhh
Confidence 12334444544444443 35899988887763 666666666544333
No 59
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=30.12 E-value=3.4e+02 Score=27.46 Aligned_cols=99 Identities=14% Similarity=0.129 Sum_probs=54.4
Q ss_pred CCCcEEEEEEeeCCCHH-------------------------HHHHHHHHHcCCCCeEEEEEcCC-C--ChHHHHHHHhh
Q 015112 68 KIPRFAYLVSGSKGDLE-------------------------KLWRTLQALYHPRNRYVLHLDLE-A--PTEERLELASR 119 (413)
Q Consensus 68 ~~~kiAYLI~~hk~d~~-------------------------~l~RLL~aLy~p~n~y~IHlD~k-s--~~~~~~~L~~~ 119 (413)
..+.||||+.|-.|-+. .-.|++.+-.|||-+++- -+.+ . +.++-.++.+.
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~-p~~~~~~I~idqiR~l~~~ 99 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT-PEKGKSSLGVDAVREVTEK 99 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe-cccccccCCHHHHHHHHHH
Confidence 35788999987765321 123555566788754432 2321 2 34444445444
Q ss_pred hccCCCcccccceEeeCccceeeecCccHHHHHHHHHHHHHhCCCCCceEEeccCC
Q 015112 120 VEKDPMFSKVGNVYMSTKANMVTYRGPTMVANTLHACAILLKNSKDWDWFINLSAS 175 (413)
Q Consensus 120 v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgs 175 (413)
+...+.. ..-.|.++...+ .|-.+.-+++--.|+++++..+||+++.+
T Consensus 100 ~~~~~~~-g~~kV~iI~~ae-------~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 100 LYEHARL-GGAKVVWLPDAA-------LLTDAAANALLKTLEEPPENTWFFLACRE 147 (334)
T ss_pred Hhhcccc-CCceEEEEcchH-------hhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 4322211 223555555433 44444445555566678888999999875
No 60
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=29.65 E-value=4.6e+02 Score=24.32 Aligned_cols=106 Identities=6% Similarity=0.009 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEcCCC-ChHHHHHHHhhhccCCCcccccceEeeCccc--eeeecCcc-----HHHHHHH
Q 015112 83 LEKLWRTLQALYHPRNRYVLHLDLEA-PTEERLELASRVEKDPMFSKVGNVYMSTKAN--MVTYRGPT-----MVANTLH 154 (413)
Q Consensus 83 ~~~l~RLL~aLy~p~n~y~IHlD~ks-~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~--~V~wgg~S-----~V~AtL~ 154 (413)
...+-..++|+=|....++|..=+.. ...|...++ ..+||.+..-.. ...+.... .+++-+.
T Consensus 36 TAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~----------~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (178)
T PRK07414 36 TSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQ----------LGQNLDWVRCDLPRCLDTPHLDESEKKALQELWQ 105 (178)
T ss_pred HHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHH----------hCCCcEEEECCCCCeeeCCCcCHHHHHHHHHHHH
Confidence 47888889999999999999999875 345554443 245666653221 12222221 2233333
Q ss_pred HHHHHHhCCCCCceEEe---ccCCcccccchhHHHHHHhccCCCcceE
Q 015112 155 ACAILLKNSKDWDWFIN---LSASDYPLVTQDDLLYTFSGLSRKLNFI 199 (413)
Q Consensus 155 ~~~~lL~~~~~wdyfi~---LSgsDyPLkt~~~i~~~f~~~~~~~nFI 199 (413)
-++.++. .++||-+|+ +.+-+|=|.+-+++.++++..+.+.+-|
T Consensus 106 ~a~~~l~-~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evI 152 (178)
T PRK07414 106 YTQAVVD-EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVI 152 (178)
T ss_pred HHHHHHh-CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEE
Confidence 3334443 478999996 6777888999999999998777666665
No 61
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=29.60 E-value=3.7e+02 Score=24.72 Aligned_cols=106 Identities=19% Similarity=0.187 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEcCC-CChHHHHHHHhhhccCCCcccccceEeeCccceeeecCcc------HHHHHHHH
Q 015112 83 LEKLWRTLQALYHPRNRYVLHLDLE-APTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPT------MVANTLHA 155 (413)
Q Consensus 83 ~~~l~RLL~aLy~p~n~y~IHlD~k-s~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S------~V~AtL~~ 155 (413)
...+--.++|+=|....+++..=+. ....|...++ ..+||.+..-.....|.... .++.-++-
T Consensus 18 TAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~----------~l~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~ 87 (172)
T PF02572_consen 18 TAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALK----------KLPNVEIERFGKGFVWRMNEEEEDRAAAREGLEE 87 (172)
T ss_dssp HHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHG----------GGT--EEEE--TT----GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHH----------hCCeEEEEEcCCcccccCCCcHHHHHHHHHHHHH
Confidence 3667778899999999999999887 4445555443 45677765433344554432 22233333
Q ss_pred HHHHHhCCCCCceEEe---ccCCcccccchhHHHHHHhccCCCcceE
Q 015112 156 CAILLKNSKDWDWFIN---LSASDYPLVTQDDLLYTFSGLSRKLNFI 199 (413)
Q Consensus 156 ~~~lL~~~~~wdyfi~---LSgsDyPLkt~~~i~~~f~~~~~~~nFI 199 (413)
++.++. ...||-+|+ +-+-++=+.+.+++.+++...+...+-|
T Consensus 88 a~~~i~-~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evV 133 (172)
T PF02572_consen 88 AKEAIS-SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVV 133 (172)
T ss_dssp HHHHTT--TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEE
T ss_pred HHHHHh-CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEE
Confidence 333332 578999997 6677788899999999998766666655
No 62
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=29.60 E-value=4e+02 Score=27.14 Aligned_cols=98 Identities=13% Similarity=0.000 Sum_probs=56.8
Q ss_pred EEEEEEeeCCCHHHHHHHHHHHcCC-----CCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccc--eeeec
Q 015112 72 FAYLVSGSKGDLEKLWRTLQALYHP-----RNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKAN--MVTYR 144 (413)
Q Consensus 72 iAYLI~~hk~d~~~l~RLL~aLy~p-----~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~--~V~wg 144 (413)
++.+|++++ .++.++|+|++|..- ...++|--|..... ..+.++.+. .+|.++.... ....|
T Consensus 2 ~PVlv~ayN-Rp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~-~~~~v~~~~---------~~i~~i~~~~~~~~~~~ 70 (334)
T cd02514 2 IPVLVIACN-RPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEE-VADVAKSFG---------DGVTHIQHPPISIKNVN 70 (334)
T ss_pred cCEEEEecC-CHHHHHHHHHHHHhccccCCCceEEEEeCCCchH-HHHHHHhhc---------cccEEEEcccccccccC
Confidence 457888998 589999999999643 34677878875432 222222211 1333332211 11111
Q ss_pred ------C-ccHHHHHHHHHHHHHhCCCCCceEEeccCCcccccc
Q 015112 145 ------G-PTMVANTLHACAILLKNSKDWDWFINLSASDYPLVT 181 (413)
Q Consensus 145 ------g-~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt 181 (413)
+ ..+......++..++.. .+.+++|.|-+.+.|-..
T Consensus 71 ~~~~~~~y~~ia~hyk~aln~vF~~-~~~~~vIILEDDl~~sPd 113 (334)
T cd02514 71 PPHKFQGYYRIARHYKWALTQTFNL-FGYSFVIILEDDLDIAPD 113 (334)
T ss_pred cccccchhhHHHHHHHHHHHHHHHh-cCCCEEEEECCCCccCHh
Confidence 2 23333334466667654 368999999999887654
No 63
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=28.74 E-value=5e+02 Score=25.59 Aligned_cols=99 Identities=11% Similarity=0.032 Sum_probs=52.9
Q ss_pred CCCcEEEEEEeeCCC--HHHHHHHHHHH-------cCCCCeEEEEEcCCC-ChHHHHHHHhhhccCCCcccccceEeeCc
Q 015112 68 KIPRFAYLVSGSKGD--LEKLWRTLQAL-------YHPRNRYVLHLDLEA-PTEERLELASRVEKDPMFSKVGNVYMSTK 137 (413)
Q Consensus 68 ~~~kiAYLI~~hk~d--~~~l~RLL~aL-------y~p~n~y~IHlD~ks-~~~~~~~L~~~v~~~~~~~~~~NV~vv~~ 137 (413)
..+++|||+.|..|- ......+.++| .||+-..+...|.+. +.++-.++...+...|.. .-..|.|+.+
T Consensus 23 ~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~-~~~kv~iI~~ 101 (313)
T PRK05564 23 NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYE-GDKKVIIIYN 101 (313)
T ss_pred CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCccc-CCceEEEEec
Confidence 457899999987763 22444555555 255544444445443 223333333333333433 2346777665
Q ss_pred cceeeecCccHHHHHHHHHHHHHhCCCCCceEEeccC
Q 015112 138 ANMVTYRGPTMVANTLHACAILLKNSKDWDWFINLSA 174 (413)
Q Consensus 138 ~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSg 174 (413)
.. .|-.+.-+++-..|+++++..+||+++.
T Consensus 102 ad-------~m~~~a~naLLK~LEepp~~t~~il~~~ 131 (313)
T PRK05564 102 SE-------KMTEQAQNAFLKTIEEPPKGVFIILLCE 131 (313)
T ss_pred hh-------hcCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 32 2223333444455566777889999874
No 64
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=28.62 E-value=1.9e+02 Score=26.05 Aligned_cols=97 Identities=11% Similarity=0.003 Sum_probs=51.2
Q ss_pred EEEeeCCCHHHHHHHHHHHc----C--CCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccc-eEeeCccceeeecCcc
Q 015112 75 LVSGSKGDLEKLWRTLQALY----H--PRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGN-VYMSTKANMVTYRGPT 147 (413)
Q Consensus 75 LI~~hk~d~~~l~RLL~aLy----~--p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~N-V~vv~~~~~V~wgg~S 147 (413)
+|.++. ..+.+.++|+.+. . +.+.=+|-+|..|++...+.++.+.+ ..++ |+++.... ..|.+
T Consensus 2 iip~yN-~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~------~~~~~i~~i~~~~---n~G~~ 71 (211)
T cd04188 2 VIPAYN-EEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLAR------KNPALIRVLTLPK---NRGKG 71 (211)
T ss_pred EEcccC-hHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHH------hCCCcEEEEEccc---CCCcH
Confidence 455665 4555665555553 1 13444666888877665555554432 2233 35553221 22332
Q ss_pred HHHHHHHHHHHHHhCCCCCceEEeccCCcccccchhHHHHHHh
Q 015112 148 MVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFS 190 (413)
Q Consensus 148 ~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f~ 190 (413)
.|...+++.+. -||++.+.+.+.+- .+.|.+.+.
T Consensus 72 --~a~~~g~~~a~-----gd~i~~ld~D~~~~--~~~l~~l~~ 105 (211)
T cd04188 72 --GAVRAGMLAAR-----GDYILFADADLATP--FEELEKLEE 105 (211)
T ss_pred --HHHHHHHHHhc-----CCEEEEEeCCCCCC--HHHHHHHHH
Confidence 34444555542 28999999888743 444444443
No 65
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=28.19 E-value=4.1e+02 Score=23.28 Aligned_cols=98 Identities=14% Similarity=0.059 Sum_probs=52.7
Q ss_pred EEEeeCCCHHHHHHHHHHHcC---CC-CeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccHHH
Q 015112 75 LVSGSKGDLEKLWRTLQALYH---PR-NRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVA 150 (413)
Q Consensus 75 LI~~hk~d~~~l~RLL~aLy~---p~-n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~ 150 (413)
+|-+++ +.+.+.++|+++.. |. +.-+|-+|..+++...+.++.. ...|.+... ..++| .-.
T Consensus 2 vIp~~n-e~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~---------~~~~~~~~~---~~~~g--k~~ 66 (183)
T cd06438 2 LIPAHN-EEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAA---------GATVLERHD---PERRG--KGY 66 (183)
T ss_pred EEeccc-hHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHc---------CCeEEEeCC---CCCCC--HHH
Confidence 566777 67888899888842 32 2334456655655433322211 112332221 22333 334
Q ss_pred HHHHHHHHHHhCCCCCceEEeccCCcccccchhHHHHHH
Q 015112 151 NTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTF 189 (413)
Q Consensus 151 AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f 189 (413)
|.-.+++.+.+...+.||++.+-+.+.|- .+.|.+..
T Consensus 67 aln~g~~~a~~~~~~~d~v~~~DaD~~~~--p~~l~~l~ 103 (183)
T cd06438 67 ALDFGFRHLLNLADDPDAVVVFDADNLVD--PNALEELN 103 (183)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCCCCC--hhHHHHHH
Confidence 44445555543345689999999988874 44444443
No 66
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=27.91 E-value=5.2e+02 Score=24.43 Aligned_cols=108 Identities=18% Similarity=0.080 Sum_probs=57.7
Q ss_pred EEEEEEeeCCC-HHHHHHHHHHH--cCCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccH
Q 015112 72 FAYLVSGSKGD-LEKLWRTLQAL--YHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTM 148 (413)
Q Consensus 72 iAYLI~~hk~d-~~~l~RLL~aL--y~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~ 148 (413)
.||+-++...+ ...+.-++..| .+++..++|+++...+.+.++.|+... ...-.|..+.........+-..
T Consensus 1 ~ay~t~~~~~~Y~~~a~vl~~SL~~~~~~~~~~vl~~~~is~~~~~~L~~~~------~~~~~v~~i~~~~~~~~~~~~~ 74 (240)
T cd02537 1 EAYVTLLTNDDYLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVG------WIVREVEPIDPPDSANLLKRPR 74 (240)
T ss_pred CEEEEEecChhHHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHHcC------CEEEecCccCCcchhhhccchH
Confidence 37777765522 34455555555 245667788888877777777776531 0111112222111110011122
Q ss_pred HHHHHHHHHHHHhCCCCCceEEeccCCcccccchhHHHH
Q 015112 149 VANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLY 187 (413)
Q Consensus 149 V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~ 187 (413)
..++..=+. +.+. .++|.++.|.+.-+.+.+.++|-+
T Consensus 75 ~~~~~~kl~-~~~l-~~~drvlylD~D~~v~~~i~~Lf~ 111 (240)
T cd02537 75 FKDTYTKLR-LWNL-TEYDKVVFLDADTLVLRNIDELFD 111 (240)
T ss_pred HHHHhHHHH-hccc-cccceEEEEeCCeeEccCHHHHhC
Confidence 222221111 1122 479999999999999999888743
No 67
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=26.73 E-value=1e+03 Score=27.62 Aligned_cols=112 Identities=17% Similarity=0.157 Sum_probs=60.5
Q ss_pred CCCCcEEEEEEeeCCCHHHHHHHHHHH---cCCCCeE-EEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceee
Q 015112 67 PKIPRFAYLVSGSKGDLEKLWRTLQAL---YHPRNRY-VLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVT 142 (413)
Q Consensus 67 ~~~~kiAYLI~~hk~d~~~l~RLL~aL---y~p~n~y-~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~ 142 (413)
+..|+++.+|-+|+.+.+.+++.+.+. +.|...+ ++-+|..+.++.+ ++++ ..+|+++.....
T Consensus 257 ~~~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~-~la~----------~~~v~yI~R~~n-- 323 (852)
T PRK11498 257 SLWPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFR-QFAQ----------EVGVKYIARPTH-- 323 (852)
T ss_pred CCCCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHH-HHHH----------HCCcEEEEeCCC--
Confidence 345799999999995556667777654 4465432 4555665555433 3321 125676643211
Q ss_pred ecCccHHHHHHHHHHHHHhCCCCCceEEeccCCcccccch-hHHHHHHhccCCCcceE
Q 015112 143 YRGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQ-DDLLYTFSGLSRKLNFI 199 (413)
Q Consensus 143 wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~-~~i~~~f~~~~~~~nFI 199 (413)
-++ ... ++..+++. .+-||++.+.+.+.|-.+- +.+..+|.+ +.+.-++
T Consensus 324 ~~g--KAG----nLN~aL~~-a~GEyIavlDAD~ip~pdfL~~~V~~f~~-dP~VglV 373 (852)
T PRK11498 324 EHA--KAG----NINNALKY-AKGEFVAIFDCDHVPTRSFLQMTMGWFLK-DKKLAMM 373 (852)
T ss_pred Ccc--hHH----HHHHHHHh-CCCCEEEEECCCCCCChHHHHHHHHHHHh-CCCeEEE
Confidence 111 111 12223332 2469999999999986543 333444433 3344444
No 68
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=26.68 E-value=6.7e+02 Score=25.28 Aligned_cols=106 Identities=20% Similarity=0.163 Sum_probs=61.4
Q ss_pred CCcEEEEEEeeCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccc-cceEeeCccceeeec
Q 015112 69 IPRFAYLVSGSKGDLEKLWRTLQALY---HPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKV-GNVYMSTKANMVTYR 144 (413)
Q Consensus 69 ~~kiAYLI~~hk~d~~~l~RLL~aLy---~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~-~NV~vv~~~~~V~wg 144 (413)
.|++..+|=+|+.+.+-+++++.++. .|+..+++-.|... +...+.+++..+ ++ +++.++..
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~-d~~~~~~~~~~~------~~~~~~~~~~~------- 118 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGST-DETYEILEELGA------EYGPNFRVIYP------- 118 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCC-hhHHHHHHHHHh------hcCcceEEEec-------
Confidence 58999999999976669999998884 45556666666444 444444444332 23 46665510
Q ss_pred CccHHHHHHHHHHHHHhCCCCCceEEeccCCcccccch-hHHHHHHh
Q 015112 145 GPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQ-DDLLYTFS 190 (413)
Q Consensus 145 g~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~-~~i~~~f~ 190 (413)
.....+-..++...++. ...|+++.+-+...|=+.. .++...|.
T Consensus 119 -~~~~~gK~~al~~~l~~-~~~d~V~~~DaD~~~~~d~l~~~~~~f~ 163 (439)
T COG1215 119 -EKKNGGKAGALNNGLKR-AKGDVVVILDADTVPEPDALRELVSPFE 163 (439)
T ss_pred -cccCccchHHHHHHHhh-cCCCEEEEEcCCCCCChhHHHHHHhhhc
Confidence 11111222334444443 2378998888887775432 34444443
No 69
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=25.62 E-value=5.1e+02 Score=23.50 Aligned_cols=103 Identities=15% Similarity=-0.007 Sum_probs=54.4
Q ss_pred EEEEeeCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCChHH-HHHHHhhhccCCCcccccceEeeCccceeeecCccHH
Q 015112 74 YLVSGSKGDLEKLWRTLQALYH---PRNRYVLHLDLEAPTEE-RLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMV 149 (413)
Q Consensus 74 YLI~~hk~d~~~l~RLL~aLy~---p~n~y~IHlD~ks~~~~-~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V 149 (413)
.+|-+|+.+++.|.++|+.|.. |+.. +|=+|..+++.. .+.++...+. ...++.++.... ..|+ ..
T Consensus 2 iiip~~ne~~~~l~~~l~sl~~q~~~~~e-iiVvdd~s~D~t~~~~i~~~~~~-----~~~~i~~i~~~~--~~G~--~~ 71 (236)
T cd06435 2 IHVPCYEEPPEMVKETLDSLAALDYPNFE-VIVIDNNTKDEALWKPVEAHCAQ-----LGERFRFFHVEP--LPGA--KA 71 (236)
T ss_pred eeEeeCCCcHHHHHHHHHHHHhCCCCCcE-EEEEeCCCCchhHHHHHHHHHHH-----hCCcEEEEEcCC--CCCC--ch
Confidence 3566777445789999888843 3334 455565554443 2334333221 123566553221 1232 12
Q ss_pred HHHHHHHHHHHhCCCCCceEEeccCCcccccchhHHHHHHhc
Q 015112 150 ANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFSG 191 (413)
Q Consensus 150 ~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f~~ 191 (413)
.|.-.+++.+ ..+.||++.+-+.+. .+.+.|.+....
T Consensus 72 ~a~n~g~~~a---~~~~d~i~~lD~D~~--~~~~~l~~l~~~ 108 (236)
T cd06435 72 GALNYALERT---APDAEIIAVIDADYQ--VEPDWLKRLVPI 108 (236)
T ss_pred HHHHHHHHhc---CCCCCEEEEEcCCCC--cCHHHHHHHHHH
Confidence 2222333332 134799999888875 466777666544
No 70
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=25.29 E-value=2.2e+02 Score=28.83 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=42.1
Q ss_pred HHHHHHHcCCCCeEEEEEcCCC-ChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccHHHHHHHHHHHHHhCCCC
Q 015112 87 WRTLQALYHPRNRYVLHLDLEA-PTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVANTLHACAILLKNSKD 165 (413)
Q Consensus 87 ~RLL~aLy~p~n~y~IHlD~ks-~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~ 165 (413)
.|++.+-.||+-.++-..|.+. +.++-.++.+.+...+... .-.|.++...+ .|-.+.-+++--.|.++++
T Consensus 65 C~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g-~~KV~iI~~a~-------~m~~~AaNaLLKtLEEPp~ 136 (325)
T PRK06871 65 CHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQG-GNKVVYIQGAE-------RLTEAAANALLKTLEEPRP 136 (325)
T ss_pred HHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhccccC-CceEEEEechh-------hhCHHHHHHHHHHhcCCCC
Confidence 4555555677755443334332 3444444544443333222 23555555433 3434444555555667788
Q ss_pred CceEEeccCC
Q 015112 166 WDWFINLSAS 175 (413)
Q Consensus 166 wdyfi~LSgs 175 (413)
.-+||+++.+
T Consensus 137 ~~~fiL~t~~ 146 (325)
T PRK06871 137 NTYFLLQADL 146 (325)
T ss_pred CeEEEEEECC
Confidence 8888888765
No 71
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=24.88 E-value=4.5e+02 Score=22.59 Aligned_cols=98 Identities=12% Similarity=0.039 Sum_probs=52.0
Q ss_pred EEEeeCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccHHHH
Q 015112 75 LVSGSKGDLEKLWRTLQALYH---PRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVAN 151 (413)
Q Consensus 75 LI~~hk~d~~~l~RLL~aLy~---p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 151 (413)
+|.++. ..+.++++|+++.. +...++ =+|..+++...+.+..+.+. .....+++.... .|++...+
T Consensus 2 vip~~n-~~~~l~~~l~sl~~q~~~~~eii-vvdd~s~d~t~~~~~~~~~~----~~~~~~~~~~~~-----~~~~~~~~ 70 (182)
T cd06420 2 IITTYN-RPEALELVLKSVLNQSILPFEVI-IADDGSTEETKELIEEFKSQ----FPIPIKHVWQED-----EGFRKAKI 70 (182)
T ss_pred EEeecC-ChHHHHHHHHHHHhccCCCCEEE-EEeCCCchhHHHHHHHHHhh----cCCceEEEEcCC-----cchhHHHH
Confidence 566777 57899999999953 333444 46666655544444433221 012233433221 12222222
Q ss_pred HHHHHHHHHhCCCCCceEEeccCCcccccchhHHHHHHh
Q 015112 152 TLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFS 190 (413)
Q Consensus 152 tL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f~ 190 (413)
--.+++.+ .-+|++.|.+.+.| +.+-|.+.+.
T Consensus 71 ~n~g~~~a-----~g~~i~~lD~D~~~--~~~~l~~~~~ 102 (182)
T cd06420 71 RNKAIAAA-----KGDYLIFIDGDCIP--HPDFIADHIE 102 (182)
T ss_pred HHHHHHHh-----cCCEEEEEcCCccc--CHHHHHHHHH
Confidence 22333332 35899999999988 4455555443
No 72
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=23.34 E-value=3.8e+02 Score=26.78 Aligned_cols=92 Identities=20% Similarity=0.276 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHH-cCCCCeEEEEEcCCC------ChHHHHHHHhhhccCCCcccccceEeeCccceeeecCcc-HHHHHH
Q 015112 82 DLEKLWRTLQAL-YHPRNRYVLHLDLEA------PTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPT-MVANTL 153 (413)
Q Consensus 82 d~~~l~RLL~aL-y~p~n~y~IHlD~ks------~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S-~V~AtL 153 (413)
+++||..++..+ ..|+-.++|-.=.+. ....++.|.... ..+||.+= -...+..++.+ -++...
T Consensus 145 ~~~ql~~~i~l~~~~Pd~~~VldH~G~p~~~~~~~~~w~~~m~~la-------~~pNv~~K-lSG~~~~~~~~w~~~~v~ 216 (279)
T COG3618 145 DPHQLPDLIPLALKAPDVNFVLDHCGRPDIKINLEDPWKAALARLA-------RRPNVWAK-LSGVYAYSDESWTVEDVR 216 (279)
T ss_pred ChhhhHHHHHHHhhCCCCCEEeccCCCCCccccccCHHHHHHHHHH-------hCCCeEEE-EeeecccccCCCCHHHHH
Confidence 566777777665 467666665332222 233466666543 46788642 12234444444 344444
Q ss_pred HHHHHHHhCCCCCceEEeccCCcccccchhH
Q 015112 154 HACAILLKNSKDWDWFINLSASDYPLVTQDD 184 (413)
Q Consensus 154 ~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~ 184 (413)
--++.+.+ .-.||.+|. |||+|..+...
T Consensus 217 p~~e~~i~-~fg~dR~vf--GSdwPv~~l~~ 244 (279)
T COG3618 217 PYVEELIE-LFGWDRFVF--GSDWPVTSLES 244 (279)
T ss_pred HHHHHHHH-hcCccceEe--cCCCCcccccC
Confidence 44444544 356898888 99999977643
No 73
>PRK08309 short chain dehydrogenase; Provisional
Probab=22.16 E-value=6e+02 Score=23.07 Aligned_cols=83 Identities=20% Similarity=0.202 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHcCCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccHHHHHHHHHHHHHh
Q 015112 82 DLEKLWRTLQALYHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVANTLHACAILLK 161 (413)
Q Consensus 82 d~~~l~RLL~aLy~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~ 161 (413)
+.+....+...+..+.+..++..|-....+....++..++ .++.+.+ .+.|-+...-++...+++.+=-
T Consensus 32 ~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~------~~g~id~-----lv~~vh~~~~~~~~~~~~~~gv 100 (177)
T PRK08309 32 REVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIE------KNGPFDL-----AVAWIHSSAKDALSVVCRELDG 100 (177)
T ss_pred CHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHH------HcCCCeE-----EEEeccccchhhHHHHHHHHcc
Confidence 4667777766564455667777888765555444443322 2334322 3556666656666656665543
Q ss_pred CCCCCceEEeccCC
Q 015112 162 NSKDWDWFINLSAS 175 (413)
Q Consensus 162 ~~~~wdyfi~LSgs 175 (413)
.+.+|.++|.|...
T Consensus 101 ~~~~~~~~h~~gs~ 114 (177)
T PRK08309 101 SSETYRLFHVLGSA 114 (177)
T ss_pred CCCCceEEEEeCCc
Confidence 46789999988443
No 74
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=22.06 E-value=51 Score=30.84 Aligned_cols=58 Identities=31% Similarity=0.486 Sum_probs=36.4
Q ss_pred EeccCC-CHHHHHHHHHHHhCCCCCCCCCCccccCCCCCCC------CCCCCcccCCchhHHHHHHHHHhhc
Q 015112 339 ARKFRQ-NALVLDKIDKELLGRKNGSFTPGAWCSGDPHCSK------VGDPNKIKPGPGAERLRRLVARLTM 403 (413)
Q Consensus 339 ARKF~~-d~~vLd~Id~~ll~r~~~~~~~g~w~~~~~~c~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (413)
++||.. +||++|+||+.|-+.+-++= |++.|.. -|...+=+=-||+..+.+-|.+||.
T Consensus 26 s~rFkve~DP~Ve~I~~lLPqsqCgqC-------Gy~GC~pYAeAia~~ga~in~C~PGG~~vi~kI~elLg 90 (198)
T COG2878 26 SRRFKVEEDPVVEKIDALLPQTQCGQC-------GYPGCRPYAEAIAEGGAKINRCAPGGEAVIRKIAELLG 90 (198)
T ss_pred hhhhccccCcHHHHHHHhCCccccccC-------CCCccHHHHHHHHcCCCccccCCCCcHHHHHHHHHHhc
Confidence 679997 58999999887766554321 1123332 2223333444667778888888887
No 75
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=20.09 E-value=5.6e+02 Score=21.97 Aligned_cols=87 Identities=15% Similarity=0.116 Sum_probs=49.8
Q ss_pred EEEEeeCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccHHH
Q 015112 74 YLVSGSKGDLEKLWRTLQALYH---PRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVA 150 (413)
Q Consensus 74 YLI~~hk~d~~~l~RLL~aLy~---p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~ 150 (413)
.+|.+++ ..+.+.++|+.|.. ++.. +|=+|..+++...+.++++.+ . .+.++.. ..+| ...
T Consensus 2 ivi~~~n-~~~~l~~~l~sl~~q~~~~~e-vivvDd~s~d~~~~~~~~~~~------~--~~~~~~~----~~~g--~~~ 65 (202)
T cd06433 2 IITPTYN-QAETLEETIDSVLSQTYPNIE-YIVIDGGSTDGTVDIIKKYED------K--ITYWISE----PDKG--IYD 65 (202)
T ss_pred EEEeccc-hHHHHHHHHHHHHhCCCCCce-EEEEeCCCCccHHHHHHHhHh------h--cEEEEec----CCcC--HHH
Confidence 3566777 57889999988842 3322 555677776665555543221 1 2333322 1233 334
Q ss_pred HHHHHHHHHHhCCCCCceEEeccCCcccccc
Q 015112 151 NTLHACAILLKNSKDWDWFINLSASDYPLVT 181 (413)
Q Consensus 151 AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt 181 (413)
|.-.+++.+ +-||++.|.+.|.+...
T Consensus 66 a~n~~~~~a-----~~~~v~~ld~D~~~~~~ 91 (202)
T cd06433 66 AMNKGIALA-----TGDIIGFLNSDDTLLPG 91 (202)
T ss_pred HHHHHHHHc-----CCCEEEEeCCCcccCch
Confidence 444343332 35899999999988753
Done!