BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015113
(413 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 160/339 (47%), Gaps = 30/339 (8%)
Query: 76 LVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRA--SLLERAGVFVVEGDI 133
L+TG AGF+G+++ L + V+GLDNF+ + +L + S + + +EGDI
Sbjct: 42 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 101
Query: 134 NDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQPA 193
D E++ V HV+H AA V ++ +P++ +NI GF+N+L A K A Q +
Sbjct: 102 RDLTTCEQVMKGV--DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ-S 158
Query: 194 IIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLSITGLRFFT 253
+A+SSS YG + +P E++ P S YA TK E A Y YG GLR+F
Sbjct: 159 FTYAASSSTYGDHPALPKVEEN-IGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFN 217
Query: 254 VYGPWGRPDMVYFF----FTKNILKRKPVMIFEGPNHATVARDFTYIDDIVK-GCLAALD 308
V+G P+ Y +T +LK V I +RDF YID++++ L+AL
Sbjct: 218 VFGRRQDPNGAYAAVIPKWTAAMLKGDDVYI---NGDGETSRDFCYIDNVIQMNILSAL- 273
Query: 309 XXXXXXXXXXXXXXXXQLRVFN--LGNKSP--EPVGKLVSXXXXXXXXXXXXXXXPMPAN 364
+ ++N +G+++ E G + +
Sbjct: 274 -----------AKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRS 322
Query: 365 GDVLFTHANVSLARRELGYKPTTNLQTGLKKFVRWYLDY 403
GDV + A+V+ A L Y+P ++ GL+ + WY+ +
Sbjct: 323 GDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRF 361
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 160/339 (47%), Gaps = 30/339 (8%)
Query: 76 LVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRA--SLLERAGVFVVEGDI 133
L+TG AGF+G+++ L + V+GLDNF+ + +L + S + + +EGDI
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 88
Query: 134 NDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQPA 193
D E++ V HV+H AA V ++ +P++ +NI GF+N+L A K A Q +
Sbjct: 89 RDLTTCEQVMKGV--DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ-S 145
Query: 194 IIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLSITGLRFFT 253
+A+SSS YG + +P E++ P S YA TK E A Y YG GLR+F
Sbjct: 146 FTYAASSSTYGDHPALPKVEEN-IGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFN 204
Query: 254 VYGPWGRPDMVYFF----FTKNILKRKPVMIFEGPNHATVARDFTYIDDIVK-GCLAALD 308
V+G P+ Y +T +LK V I +RDF YID++++ L+AL
Sbjct: 205 VFGRRQDPNGAYAAVIPKWTAAMLKGDDVYI---NGDGETSRDFCYIDNVIQMNILSAL- 260
Query: 309 XXXXXXXXXXXXXXXXQLRVFN--LGNKSP--EPVGKLVSXXXXXXXXXXXXXXXPMPAN 364
+ ++N +G+++ E G + +
Sbjct: 261 -----------AKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRS 309
Query: 365 GDVLFTHANVSLARRELGYKPTTNLQTGLKKFVRWYLDY 403
GDV + A+V+ A L Y+P ++ GL+ + WY+ +
Sbjct: 310 GDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRF 348
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 160/339 (47%), Gaps = 30/339 (8%)
Query: 76 LVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRA--SLLERAGVFVVEGDI 133
L+TG AGF+G+++ L + V+GLDNF+ + +L + S + + +EGDI
Sbjct: 23 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 82
Query: 134 NDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQPA 193
D E++ V HV+H AA V ++ +P++ +NI GF+N+L A K A Q +
Sbjct: 83 RDLTTCEQVMKGV--DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ-S 139
Query: 194 IIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLSITGLRFFT 253
+A+SSS YG + +P E++ P S YA TK E A Y YG GLR+F
Sbjct: 140 FTYAASSSTYGDHPALPKVEEN-IGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFN 198
Query: 254 VYGPWGRPDMVYFF----FTKNILKRKPVMIFEGPNHATVARDFTYIDDIVK-GCLAALD 308
V+G P+ Y +T +LK V I +RDF YID++++ L+AL
Sbjct: 199 VFGRRQDPNGAYAAVIPKWTAAMLKGDDVYI---NGDGETSRDFCYIDNVIQMNILSAL- 254
Query: 309 XXXXXXXXXXXXXXXXQLRVFN--LGNKSP--EPVGKLVSXXXXXXXXXXXXXXXPMPAN 364
+ ++N +G+++ E G + +
Sbjct: 255 -----------AKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRS 303
Query: 365 GDVLFTHANVSLARRELGYKPTTNLQTGLKKFVRWYLDY 403
GDV + A+V+ A L Y+P ++ GL+ + WY+ +
Sbjct: 304 GDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRF 342
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 160/339 (47%), Gaps = 30/339 (8%)
Query: 76 LVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRA--SLLERAGVFVVEGDI 133
L+TG AGF+G+++ L + V+GLDNF+ + +L + S + + +EGDI
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 88
Query: 134 NDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQPA 193
D E++ V HV+H AA V ++ +P++ +NI GF+N+L A K A Q +
Sbjct: 89 RDLTTCEQVMKGV--DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ-S 145
Query: 194 IIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLSITGLRFFT 253
+A+SSS YG + +P E++ P S YA TK E A Y YG GLR+F
Sbjct: 146 FTYAASSSTYGDHPALPKVEEN-IGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFN 204
Query: 254 VYGPWGRPDMVYFF----FTKNILKRKPVMIFEGPNHATVARDFTYIDDIVK-GCLAALD 308
V+G P+ Y +T +LK V I +RDF YID++++ L+AL
Sbjct: 205 VFGRRQDPNGAYAAVIPKWTAAMLKGDDVYI---NGDGETSRDFCYIDNVIQMNILSAL- 260
Query: 309 XXXXXXXXXXXXXXXXQLRVFN--LGNKSP--EPVGKLVSXXXXXXXXXXXXXXXPMPAN 364
+ ++N +G+++ E G + +
Sbjct: 261 -----------AKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRS 309
Query: 365 GDVLFTHANVSLARRELGYKPTTNLQTGLKKFVRWYLDY 403
GDV + A+V+ A L Y+P ++ GL+ + WY+ +
Sbjct: 310 GDVRASQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRF 348
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 165/355 (46%), Gaps = 33/355 (9%)
Query: 58 YRVLRSSRPRSRAGGHIVLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGR 117
Y LR P A + L+TG AGF+G+++ L + VVGLDNF + +L R
Sbjct: 16 YEELRKELP---AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVR 72
Query: 118 ASLLER--AGVFVVEGDINDSLLLEKLFNLVK-FSHVMHLAAQAGVRYAMKNPMSYVNSN 174
+ + E+ + ++GDI + L+ N +V+H AA V ++ +P++ +N
Sbjct: 73 SLVSEKQWSNFKFIQGDIRN---LDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATN 129
Query: 175 IAGFVNLLEACKTANPQPAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEI 234
I GF+N+L A + A Q + +A+SSS YG + +P E D +P S YA TK E
Sbjct: 130 IDGFLNMLIAARDAKVQ-SFTYAASSSTYGDHPGLPKVE-DTIGKPLSPYAVTKYVNELY 187
Query: 235 AHTYNHIYGLSITGLRFFTVYGPWGRPDMVYFF----FTKNILKRKPVMIFEGPNHATVA 290
A ++ YG S GLR+F V+G P+ Y +T ++++ V I +
Sbjct: 188 ADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYI---NGDGETS 244
Query: 291 RDFTYIDDIVKGCLAALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKL-VSXXXXX 349
RDF YI++ V+ L A + +V+N+ + +L +
Sbjct: 245 RDFCYIENTVQANLLA-----------ATAGLDARNQVYNIAVGGRTSLNQLFFALRDGL 293
Query: 350 XXXXXXXXXXPMPAN---GDVLFTHANVSLARRELGYKPTTNLQTGLKKFVRWYL 401
P+ + GDV + A++S A + LGY P ++ G+ + WY+
Sbjct: 294 AENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYAPKYDVSAGVALAMPWYI 348
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 149/343 (43%), Gaps = 35/343 (10%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAG---VFVVEG 131
VLVTG +G++G+H L + G V+ LDN + KR ++ER G VEG
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNL-----CNSKRSVLPVIERLGGKHPTFVEG 57
Query: 132 DINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQ 191
DI + L+ ++ + V+H A V +++ P+ Y ++N+ G + L+ A + AN +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 192 PAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIY-GLSITGLR 250
I++SS++VYG N KIP+ E T P S Y +K E+I SI LR
Sbjct: 118 -NFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 251 FFTVYG----------PWGRPDMVYFFFTKNILKRKPVMIFEGPNHATV----ARDFTYI 296
+F G P G P+ + + + + R+ + G ++ T RD+ ++
Sbjct: 177 YFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHV 236
Query: 297 DDIVKGCLAALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXXXX 356
D+ G + A++ + ++NLG V +V+
Sbjct: 237 MDLADGHVVAMEKLANKPG----------VHIYNLGAGVGNSVLDVVNAFSKACGKPVNY 286
Query: 357 XXXPMPANGDVLFTHANVSLARRELGYKPTTNLQTGLKKFVRW 399
P GD+ A+ S A REL ++ T L + W
Sbjct: 287 HFAPR-REGDLPACWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 101 bits (251), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 149/343 (43%), Gaps = 35/343 (10%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAG---VFVVEG 131
VLVTG +G++G+H L + G V+ LDN + KR ++ER G VEG
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNL-----CNSKRSVLPVIERLGGKHPTFVEG 57
Query: 132 DINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQ 191
DI + L+ ++ + V+H A V +++ P+ Y ++N+ G + L+ A + AN +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 192 PAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIY-GLSITGLR 250
I++SS++VYG N KIP+ E T P S Y +K E+I SI LR
Sbjct: 118 -NFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 251 FFTVYG----------PWGRPDMVYFFFTKNILKRKPVMIFEGPNHATV----ARDFTYI 296
+F G P G P+ + + + + R+ + G ++ T RD+ ++
Sbjct: 177 YFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHV 236
Query: 297 DDIVKGCLAALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXXXX 356
D+ G + A++ + ++NLG V +V+
Sbjct: 237 MDLADGHVVAMEKLANKPG----------VHIYNLGAGVGNSVLDVVNAFSKACGKPVNY 286
Query: 357 XXXPMPANGDVLFTHANVSLARRELGYKPTTNLQTGLKKFVRW 399
P GD+ A+ S A REL ++ T L + W
Sbjct: 287 HFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 118/238 (49%), Gaps = 14/238 (5%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDIN 134
VLVTG AGF+G+H+ L RG V LDN L G+ + + GV D+
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEVAVLDN--------LATGKRENVPK-GVPFFRVDLR 53
Query: 135 DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQPAI 194
D +E+ F + +HV H AAQA V+ ++++P+ N+ G +NLLEAC+ + +
Sbjct: 54 DKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLV 113
Query: 195 IWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLSITGLRFFTV 254
++ ++YG + +E+ +P S YAA+K A E Y YGL LR+ V
Sbjct: 114 FASTGGAIYGEVPEGERAEETWPPRPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYGNV 173
Query: 255 YGPWGRPD---MVYFFFTKNILKRKPVMIF--EGPNHATVARDFTYIDDIVKGCLAAL 307
YGP P V F + +LK PV ++ + P RD+ Y+ D+ + AL
Sbjct: 174 YGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALAL 231
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 149/343 (43%), Gaps = 35/343 (10%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAG---VFVVEG 131
VLVTG +G++G+H L + G V+ LDN + KR ++ER G VEG
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNL-----CNSKRSVLPVIERLGGKHPTFVEG 57
Query: 132 DINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQ 191
DI + L+ ++ + V+H A V +++ P+ Y ++N+ G + L+ A + AN +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 192 PAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIY-GLSITGLR 250
I++S+++VYG N KIP+ E T P S Y +K E+I SI LR
Sbjct: 118 -NFIFSSTATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 251 FFTVYG----------PWGRPDMVYFFFTKNILKRKPVMIFEGPNHATV----ARDFTYI 296
+F G P G P+ + + + + R+ + G ++ T RD+ ++
Sbjct: 177 YFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHV 236
Query: 297 DDIVKGCLAALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXXXX 356
D+ G + A++ + ++NLG V +V+
Sbjct: 237 MDLADGHVVAMEKLANKPG----------VHIYNLGAGVGNSVLDVVNAFSKACGKPVNY 286
Query: 357 XXXPMPANGDVLFTHANVSLARRELGYKPTTNLQTGLKKFVRW 399
P GD+ A+ S A REL ++ T L + W
Sbjct: 287 HFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 149/343 (43%), Gaps = 35/343 (10%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAG---VFVVEG 131
VLVTG +G++G+H L + G V+ LDN + KR ++ER G VEG
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNL-----CNSKRSVLPVIERLGGKHPTFVEG 57
Query: 132 DINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQ 191
DI + L+ ++ + V+H A V +++ P+ Y ++N+ G + L+ A + AN +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 192 PAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIY-GLSITGLR 250
I++S+++VYG N KIP+ E T P S Y +K E+I SI LR
Sbjct: 118 -NFIFSSAATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 251 FFTVYG----------PWGRPDMVYFFFTKNILKRKPVMIFEGPNHATV----ARDFTYI 296
+F G P G P+ + + + + R+ + G ++ T RD+ ++
Sbjct: 177 YFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHV 236
Query: 297 DDIVKGCLAALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXXXX 356
D+ G + A++ + ++NLG V +V+
Sbjct: 237 MDLADGHVVAMEKLANKPG----------VHIYNLGAGVGNSVLDVVNAFSKACGKPVNY 286
Query: 357 XXXPMPANGDVLFTHANVSLARRELGYKPTTNLQTGLKKFVRW 399
P GD+ A+ S A REL ++ T L + W
Sbjct: 287 HFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 148/343 (43%), Gaps = 35/343 (10%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAG---VFVVEG 131
VLVTG +G++G+H L + G V+ LDN + KR ++ER G VEG
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNL-----CNSKRSVLPVIERLGGKHPTFVEG 57
Query: 132 DINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQ 191
DI + L+ ++ + V+H A V +++ P+ Y ++N+ G + L+ A + AN +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 192 PAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIY-GLSITGLR 250
I++SS++VYG KIP+ E T P S Y +K E+I SI LR
Sbjct: 118 -NFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 251 FFTVYG----------PWGRPDMVYFFFTKNILKRKPVMIFEGPNHATV----ARDFTYI 296
+F G P G P+ + + + + R+ + G ++ T RD+ ++
Sbjct: 177 YFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHV 236
Query: 297 DDIVKGCLAALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXXXX 356
D+ G + A++ + ++NLG V +V+
Sbjct: 237 MDLADGHVVAMEKLANKPG----------VHIYNLGAGVGNSVLDVVNAFSKACGKPVNY 286
Query: 357 XXXPMPANGDVLFTHANVSLARRELGYKPTTNLQTGLKKFVRW 399
P GD+ A+ S A REL ++ T L + W
Sbjct: 287 HFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 148/343 (43%), Gaps = 35/343 (10%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAG---VFVVEG 131
VLVTG +G++G+H L + G V+ LDN + KR ++ER G VEG
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNL-----CNSKRSVLPVIERLGGKHPTFVEG 57
Query: 132 DINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQ 191
DI + L+ ++ + V+H A V +++ P+ Y ++N+ G + L+ A + AN +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 192 PAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIY-GLSITGLR 250
I++S ++VYG N KIP+ E T P S Y +K E+I SI LR
Sbjct: 118 -NFIFSSVATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 251 FFTVYG----------PWGRPDMVYFFFTKNILKRKPVMIFEGPNHATV----ARDFTYI 296
+F G P G P+ + + + + R+ + G ++ T RD+ ++
Sbjct: 177 YFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHV 236
Query: 297 DDIVKGCLAALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXXXX 356
D+ G + A++ + ++NLG V +V+
Sbjct: 237 MDLADGHVVAMEKLANKPG----------VHIYNLGAGVGNSVLDVVNAFSKACGKPVNY 286
Query: 357 XXXPMPANGDVLFTHANVSLARRELGYKPTTNLQTGLKKFVRW 399
P GD+ A+ S A REL ++ T L + W
Sbjct: 287 HFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 149/343 (43%), Gaps = 35/343 (10%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAG---VFVVEG 131
VLVTG +G++G+H L + G V+ LDN + KR ++ER G VEG
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNL-----CNSKRSVLPVIERLGGKHPTFVEG 57
Query: 132 DINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQ 191
DI + L+ ++ + V+H A V +++ P+ Y ++N+ G + L+ A + AN +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 192 PAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIY-GLSITGLR 250
I++S+++VYG N KIP+ E T P S + +K E+I SI LR
Sbjct: 118 -NFIFSSAATVYGDNPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 251 FFTVYG----------PWGRPDMVYFFFTKNILKRKPVMIFEGPNHATV----ARDFTYI 296
+F G P G P+ + + + + R+ + G ++ T RD+ ++
Sbjct: 177 YFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHV 236
Query: 297 DDIVKGCLAALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXXXX 356
D+ G + A++ + ++NLG V +V+
Sbjct: 237 MDLADGHVVAMEKLANKPG----------VHIYNLGAGVGNSVLDVVNAFSKACGKPVNY 286
Query: 357 XXXPMPANGDVLFTHANVSLARRELGYKPTTNLQTGLKKFVRW 399
P GD+ A+ S A REL ++ T L + W
Sbjct: 287 HFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 148/343 (43%), Gaps = 35/343 (10%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAG---VFVVEG 131
VLVTG +G++G+H L + G V+ LDN + KR ++ER G VEG
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNL-----CNSKRSVLPVIERLGGKHPTFVEG 57
Query: 132 DINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQ 191
DI + L+ ++ + V+H A V +++ P+ Y ++N+ G + L+ A + AN +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 192 PAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIY-GLSITGLR 250
I++S+++VYG KIP+ E T P S Y +K E+I SI LR
Sbjct: 118 -NFIFSSAATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 251 FFTVYG----------PWGRPDMVYFFFTKNILKRKPVMIFEGPNHATV----ARDFTYI 296
+F G P G P+ + + + + R+ + G ++ T RD+ ++
Sbjct: 177 YFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHV 236
Query: 297 DDIVKGCLAALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXXXX 356
D+ G + A++ + ++NLG V +V+
Sbjct: 237 MDLADGHVVAMEKLANKPG----------VHIYNLGAGVGNSVLDVVNAFSKACGKPVNY 286
Query: 357 XXXPMPANGDVLFTHANVSLARRELGYKPTTNLQTGLKKFVRW 399
P GD+ A+ S A REL ++ T L + W
Sbjct: 287 HFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 148/343 (43%), Gaps = 35/343 (10%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAG---VFVVEG 131
VLVTG +G++G+H L + G V+ LDN + KR ++ER G VEG
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNL-----CNSKRSVLPVIERLGGKHPTFVEG 57
Query: 132 DINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQ 191
DI + L+ ++ + V+H A V +++ P+ Y ++N+ G + L+ A + AN +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 192 PAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIY-GLSITGLR 250
I++SS++VYG KIP+ E T P S + +K E+I SI LR
Sbjct: 118 -NFIFSSSATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 251 FFTVYG----------PWGRPDMVYFFFTKNILKRKPVMIFEGPNHATV----ARDFTYI 296
+F G P G P+ + + + + R+ + G ++ T RD+ ++
Sbjct: 177 YFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHV 236
Query: 297 DDIVKGCLAALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXXXX 356
D+ G + A++ + ++NLG V +V+
Sbjct: 237 MDLADGHVVAMEKLANKPG----------VHIYNLGAGVGNSVLDVVNAFSKACGKPVNY 286
Query: 357 XXXPMPANGDVLFTHANVSLARRELGYKPTTNLQTGLKKFVRW 399
P GD+ A+ S A REL ++ T L + W
Sbjct: 287 HFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 109/234 (46%), Gaps = 20/234 (8%)
Query: 73 HIVLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGD 132
H +L+TG AGF+G H++ AL G+ V LD+ G LE+ + + E D
Sbjct: 8 HRILITGGAGFIGGHLARALVASGEEVTVLDDLR-VPPMIPPEGTGKFLEKPVLELEERD 66
Query: 133 INDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQP 192
++D L V HLA+ V + K P+ Y++ N+ +LL C + P
Sbjct: 67 LSDVRL------------VYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVG-VP 112
Query: 193 AIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLSITGL-RF 251
++ S+ VYG +P E D P S YAA+K E +A + G+ RF
Sbjct: 113 KVVVGSTCEVYGQADTLPTPE-DSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRF 171
Query: 252 FTVYGPWGRPDMVYFFFTKNILKRKPVMIFEGPNHATVARDFTYIDDIVKGCLA 305
F VYGP RPD + N+L R + + EG RDFTYI D+V +A
Sbjct: 172 FNVYGPGERPDALVPRLCANLLTRNELPV-EGDGEQR--RDFTYITDVVDKLVA 222
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 148/343 (43%), Gaps = 35/343 (10%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAG---VFVVEG 131
VLVTG +G++G+H L + G V+ LDN + KR ++ER G VEG
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNL-----CNSKRSVLPVIERLGGKHPTFVEG 57
Query: 132 DINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQ 191
DI + L+ ++ + V+H A V +++ P+ Y ++N+ G + L+ A + AN +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 192 PAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIY-GLSITGLR 250
I++S+++VYG KIP+ E T P S + +K E+I SI LR
Sbjct: 118 -NFIFSSAATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 251 FFTVYG----------PWGRPDMVYFFFTKNILKRKPVMIFEGPNHATV----ARDFTYI 296
+F G P G P+ + + + + R+ + G ++ T RD+ ++
Sbjct: 177 YFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHV 236
Query: 297 DDIVKGCLAALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXXXX 356
D+ G + A++ + ++NLG V +V+
Sbjct: 237 MDLADGHVVAMEKLANKPG----------VHIYNLGAGVGNSVLDVVNAFSKACGKPVNY 286
Query: 357 XXXPMPANGDVLFTHANVSLARRELGYKPTTNLQTGLKKFVRW 399
P GD+ A+ S A REL ++ T L + W
Sbjct: 287 HFAPR-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 93/350 (26%), Positives = 150/350 (42%), Gaps = 43/350 (12%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYY--DTSLKRGRASLLERAG--VFVVE 130
VLVTG AG++G+H L G V +DNF++ + SL + E G V E
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEE 64
Query: 131 GDINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANP 190
DI D L++LF F V+H A V +++ P+ Y N+ G + LLE K A+
Sbjct: 65 MDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK-AHG 123
Query: 191 QPAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAH-------TYNHIYG 243
++++SS++VYG + +P E T ++ Y +K EE+ T+N +
Sbjct: 124 VKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVL- 182
Query: 244 LSITGLRFFTVYG----------PWGRPDMVYFFFTKNILKRKPVMIFEGPNH----ATV 289
LR+F G P G P+ + + ++ + R+ + G ++ T
Sbjct: 183 -----LRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 290 ARDFTYIDDIVKGCLAALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXX 349
RD+ ++ D+ KG +AAL R++NLG + V ++V
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKEQCG----------CRIYNLGTGTGYSVLQMVQAMEKA 287
Query: 350 XXXXXXXXXXPMPANGDVLFTHANVSLARRELGYKPTTNLQTGLKKFVRW 399
GDV +AN SLA+ ELG+ L + RW
Sbjct: 288 SGKKIPYKVVAR-REGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRW 336
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 148/344 (43%), Gaps = 31/344 (9%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYY--DTSLKRGRASLLERAG--VFVVE 130
VLVTG AG++G+H L G V +DNF++ + SL + E G V E
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEE 64
Query: 131 GDINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANP 190
DI D L++LF F V+H A V +++ P+ Y N+ G + LLE K A+
Sbjct: 65 MDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK-AHG 123
Query: 191 QPAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHI-YGLSITGL 249
++++SS++VYG + +P E T ++ Y +K EE+ ++ L
Sbjct: 124 VKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVVLL 183
Query: 250 RFFTVYG----------PWGRPDMVYFFFTKNILKRKPVMIFEGPNH----ATVARDFTY 295
R+F G P G P+ + + ++ + R+ + G ++ T RD+ +
Sbjct: 184 RYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIH 243
Query: 296 IDDIVKGCLAALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXXX 355
+ D+ KG +AAL R++NLG + V ++V
Sbjct: 244 VVDLAKGHIAALRKLKEQCG----------CRIYNLGTGTGYSVLQMVQAMEKASGKKIP 293
Query: 356 XXXXPMPANGDVLFTHANVSLARRELGYKPTTNLQTGLKKFVRW 399
GDV +AN SLA+ ELG+ L + RW
Sbjct: 294 YKVVAR-REGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRW 336
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 112/232 (48%), Gaps = 18/232 (7%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDIN 134
++VTG AGF+G+H+ L G VV +DN L GR + + V D+
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVVDN--------LSSGRREFVNPSAELHVR-DLK 53
Query: 135 DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQPAI 194
D +K V H AA VR + P+ + N N+ N+LE + + +
Sbjct: 54 DY----SWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVR-TV 108
Query: 195 IWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLSITGLRFFTV 254
++ASSS+VYG IP E++ +P S+Y A K AGE + TY ++G+ +R+ V
Sbjct: 109 VFASSSTVYGDADVIPTPEEEPY-KPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANV 167
Query: 255 YGPWGRPDMVYFFFTKNILKRKPVMIFEGPNHATVARDFTYIDDIVKGCLAA 306
GP R ++Y F K L+R P + E T + + Y+ D V+ LAA
Sbjct: 168 VGPRLRHGVIYDFIMK--LRRNP-NVLEVLGDGTQRKSYLYVRDAVEATLAA 216
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 148/344 (43%), Gaps = 31/344 (9%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYY--DTSLKRGRASLLERAG--VFVVE 130
VLVTG AG++G+H L G V +DNF++ + SL + E G V E
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEE 64
Query: 131 GDINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANP 190
DI D L++LF F V+H A + +++ P+ Y N+ G + LLE K A+
Sbjct: 65 MDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMK-AHG 123
Query: 191 QPAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHI-YGLSITGL 249
++++SS++VYG + +P E T ++ Y +K EE+ ++ L
Sbjct: 124 VKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVVLL 183
Query: 250 RFFTVYG----------PWGRPDMVYFFFTKNILKRKPVMIFEGPNH----ATVARDFTY 295
R+F G P G P+ + + ++ + R+ + G ++ T RD+ +
Sbjct: 184 RYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIH 243
Query: 296 IDDIVKGCLAALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXXX 355
+ D+ KG +AAL R++NLG + V ++V
Sbjct: 244 VVDLAKGHIAALRKLKEQCG----------CRIYNLGTGTGYSVLQMVQAMEKASGKKIP 293
Query: 356 XXXXPMPANGDVLFTHANVSLARRELGYKPTTNLQTGLKKFVRW 399
GDV +AN SLA+ ELG+ L + RW
Sbjct: 294 YKVVAR-REGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRW 336
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 111/232 (47%), Gaps = 22/232 (9%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDIN 134
++VTG AGF+G+H+ L G VV +D DT G A L R D+
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQ--RDTG---GSAELHVR--------DLK 49
Query: 135 DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQPAI 194
D +K V H AA VR + P+ + N N+ N+LE + + +
Sbjct: 50 DY----SWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVR-TV 104
Query: 195 IWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLSITGLRFFTV 254
++ASSS+VYG IP E++ +P S+Y A K AGE + TY ++G+ +R+ V
Sbjct: 105 VFASSSTVYGDADVIPTPEEEPY-KPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANV 163
Query: 255 YGPWGRPDMVYFFFTKNILKRKPVMIFEGPNHATVARDFTYIDDIVKGCLAA 306
GP R ++Y F K L+R P + E T + + Y+ D V+ LAA
Sbjct: 164 VGPRLRHGVIYDFIMK--LRRNP-NVLEVLGDGTQRKSYLYVRDAVEATLAA 212
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 146/341 (42%), Gaps = 38/341 (11%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDIN 134
+L+ G AG++G+H L G VV +DN ++ ++ G GD+
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAK---------FYNGDLR 54
Query: 135 DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQPAI 194
D L +F VMH AA + V +M+ P+ Y N+N+ G + LLE
Sbjct: 55 DKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDK-F 113
Query: 195 IWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLSITGLRFFTV 254
I++S+++ YG +E+ T+ P++ Y TK A E++ H Y+ L R+F V
Sbjct: 114 IFSSTAATYGEVDVDLITEETMTN-PTNTYGETKLAIEKMLHWYSQASNLRYKIFRYFNV 172
Query: 255 YG--PWG------RPD--MVYFFFTKNILKRKPVMIFEGPNH----ATVARDFTYIDDIV 300
G P G RP+ ++ + +R+ +M+F G ++ T RD+ +++D+V
Sbjct: 173 AGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMF-GDDYNTPDGTCIRDYIHVEDLV 231
Query: 301 KGCLAALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXXXXXXXP 360
L + +NLGN + V ++V P
Sbjct: 232 AAHFLGL----------KDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAP 281
Query: 361 MPANGDVLFTHANVSLARRELGYKPT-TNLQTGLKKFVRWY 400
A GD A+ A+ +LG+ P N++T ++ W+
Sbjct: 282 RRA-GDPARLVASSQKAKEKLGWDPRYVNVKTIIEHAWNWH 321
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 95/361 (26%), Positives = 150/361 (41%), Gaps = 39/361 (10%)
Query: 63 SSRPRSRAGGHIVLVTGAAGFVGTHVSAALRRRGDGVVGLDNF-NDYYDTSLKRGRASLL 121
+++ +S + IVLVTG AG++G+H L G V DN N YD+ R +L
Sbjct: 2 TAQLQSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSV---ARLEVL 58
Query: 122 ERAGVFVVEGDINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNL 181
+ + E D+ D LEK+F K V+H A V + + P+ Y ++NI G V L
Sbjct: 59 TKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVL 118
Query: 182 LEACKTANPQPAIIWASSSSVYG----LNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHT 237
LE + N +++SS++VYG IP E+ P++ Y TK A E I
Sbjct: 119 LELMQQYNVS-KFVFSSSATVYGDATRFPNMIPIPEECPLG-PTNPYGHTKYAIENI--- 173
Query: 238 YNHIYGLSITG-----LRFFTVYG----------PWGRPDMVYFFFTKNILKRKPVMIFE 282
N +Y LR+F G P G P+ + + + + R+ +
Sbjct: 174 LNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIF 233
Query: 283 GPNH----ATVARDFTYIDDIVKGCLAALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEP 338
G ++ T RD+ ++ D+ KG +AAL R +NLG+
Sbjct: 234 GDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGL------CREWNLGSGKGST 287
Query: 339 VGKLVSXXXXXXXXXXXXXXXPMPANGDVLFTHANVSLARRELGYKPTTNLQTGLKKFVR 398
V ++ A GDVL A A+REL ++ ++ K +
Sbjct: 288 VFEVYHAFCKASGIDLPYKVTGRRA-GDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWK 346
Query: 399 W 399
W
Sbjct: 347 W 347
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 137/341 (40%), Gaps = 42/341 (12%)
Query: 74 IVLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFV----V 129
+++VTG AGF+G+HV L + VV +DN L G + A V
Sbjct: 3 LIVVTGGAGFIGSHVVDKLSESNEIVV-IDN--------LSSGNEEFVNEAARLVKADLA 53
Query: 130 EGDINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTAN 189
DI D L V H+AA VR +NP +N+ LLEA + A
Sbjct: 54 ADDIKDYLK--------GAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAG 105
Query: 190 PQPAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLSITGL 249
I++ S+S+VYG K IP E D P SLY A+K A E + +Y H + +
Sbjct: 106 VS-RIVFTSTSTVYGEAKVIPTPE-DYPTHPISLYGASKLACEALIESYCHTFDMQAWIY 163
Query: 250 RFFTVYGPWGRPDMVYFFFTKNILKRKPVMIFEGPNHATVARDFTYIDDIVKGCLAALDX 309
RF V G ++Y F K LKR P + E + + + YI D V L L
Sbjct: 164 RFANVIGRRSTHGVIYDFIMK--LKRNPEEL-EILGNGEQNKSYIYISDCVDAMLFGL-- 218
Query: 310 XXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXX--XXXXXXPMPANGDV 367
++ +FN+G++ V ++ GDV
Sbjct: 219 -----------RGDERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDV 267
Query: 368 LFTHANVSLARRELGYKPTTNLQTGLKKFVRWYLDYYSDSG 408
++ +R LG+KP N + ++ VR ++ + G
Sbjct: 268 PVMLLSIEKLKR-LGWKPRYNSEEAVRMAVRDLVEDLDEEG 307
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 139/329 (42%), Gaps = 24/329 (7%)
Query: 75 VLVTGAAGFVGTH-VSAALRRRGD-GVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGD 132
+LVTG GF+G++ + L + D V+ +D Y ++ L + V+GD
Sbjct: 6 LLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLG--YGSN-PANLKDLEDDPRYTFVKGD 62
Query: 133 INDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQP 192
+ D L+++L K V+HLAA++ V ++ +P +++SN+ G LLE+ + NP+
Sbjct: 63 VADYELVKELVR--KVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEV 120
Query: 193 AIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLSITGLRFF 252
+ S+ VYG K F+E DR PSS Y+ATK A + + + Y L+ + R
Sbjct: 121 RFVHVSTDEVYGDILKGSFTENDRL-MPSSPYSATKAASDMLVLGWTRTYNLNASITRCT 179
Query: 253 TVYGPWGRPDMVYFFFTKNILKRKPVMIFEGPNHATVARDFTYIDDIVKGCLAALDXXXX 312
YGP+ P+ K I++ + RD+ Y++D V+ L
Sbjct: 180 NNYGPYQFPEK---LIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVL----- 231
Query: 313 XXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXXXXXXXPMPANGDVLFTHA 372
++N+ + ++V G L
Sbjct: 232 --------LKGESREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHDLRYSL 283
Query: 373 NVSLARRELGYKPTTNLQTGLKKFVRWYL 401
+ R+L ++P G+KK + WYL
Sbjct: 284 DSWKITRDLKWRPKYTFDEGIKKTIDWYL 312
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 24/249 (9%)
Query: 61 LRSSRPRSRAGGHIVLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASL 120
+R S G L+TG AGFVG +++ L + V G N+ A L
Sbjct: 1 MRGSHHHHHHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNE----------AKL 50
Query: 121 LERAGVFVVEGDINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVN 180
V ++ DI DS ++K+ + +K ++ HLAA++ V+ + N ++N+ G ++
Sbjct: 51 ---PNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLH 107
Query: 181 LLEACKTANPQPAIIWASSSSVYG--LNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTY 238
+L+A + +N I+ SS YG L ++ P SE+++ +P S Y +K + +A Y
Sbjct: 108 VLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQL-RPMSPYGVSKASVGMLARQY 166
Query: 239 NHIYGLSITGLRFFTVYGPWGRPDMVYFFFTKNIL-----KRKPVMIFEGPNHATVARDF 293
YG+ I R F GP V F K I+ K++P++ + RDF
Sbjct: 167 VKAYGMDIIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKV---GNLEAVRDF 223
Query: 294 TYIDDIVKG 302
T + DIV+
Sbjct: 224 TDVRDIVQA 232
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 135/336 (40%), Gaps = 37/336 (11%)
Query: 75 VLVTGAAGFVGTHVSAALRRRG------DGVVGLDNFNDYYDTSLKRGRASLLERAG--- 125
+LVTG AGF+G+H L D V+ LD+ + RA+L
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSL------TYAGNRANLAPVDADPR 56
Query: 126 VFVVEGDINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEAC 185
+ V GDI D+ LL + L ++H AA++ V ++ + +N+ G LL+ C
Sbjct: 57 LRFVHGDIRDAGLLAR--ELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQ-C 113
Query: 186 KTANPQPAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLS 245
++ S++ VYG ++E +P+S YAA+K + +A Y+ YGL
Sbjct: 114 AVDAGVGRVVHVSTNQVYGSIDSGSWTESSPL-EPNSPYAASKAGSDLVARAYHRTYGLD 172
Query: 246 ITGLRFFTVYGPWGRPDMVYFFFTKNILKRKPVMIF-EGPNHATVARDFTYIDDIVKGCL 304
+ R YGP+ P+ + F N+L + ++ +G N R++ + DD +G
Sbjct: 173 VRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGAN----VREWVHTDDHCRGIA 228
Query: 305 AALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXXXXXXXPMPAN 364
L ++++G +L
Sbjct: 229 LVLAGGRAG-------------EIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRK 275
Query: 365 GDVLFTHANVSLARRELGYKPTTNLQTGLKKFVRWY 400
G L + RELGY+P + GL + VRWY
Sbjct: 276 GHDLRYSLDGGKIERELGYRPQVSFADGLARTVRWY 311
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 134/336 (39%), Gaps = 37/336 (11%)
Query: 75 VLVTGAAGFVGTHVSAALRRRG------DGVVGLDNFNDYYDTSLKRGRASLLERAG--- 125
+LVTG AGF+G+H L D V+ LD+ + RA+L
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSL------TYAGNRANLAPVDADPR 56
Query: 126 VFVVEGDINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEAC 185
+ V GDI D+ LL + L ++H AA++ V ++ + +N+ G LL+ C
Sbjct: 57 LRFVHGDIRDAGLLAR--ELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQ-C 113
Query: 186 KTANPQPAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLS 245
++ S+ VYG ++E +P+S YAA+K + +A Y+ YGL
Sbjct: 114 AVDAGVGRVVHVSTDEVYGSIDSGSWTESSPL-EPNSPYAASKAGSDLVARAYHRTYGLD 172
Query: 246 ITGLRFFTVYGPWGRPDMVYFFFTKNILKRKPVMIF-EGPNHATVARDFTYIDDIVKGCL 304
+ R YGP+ P+ + F N+L + ++ +G N R++ + DD +G
Sbjct: 173 VRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGAN----VREWVHTDDHCRGIA 228
Query: 305 AALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXXXXXXXPMPAN 364
L ++++G +L
Sbjct: 229 LVLAGGRAG-------------EIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRK 275
Query: 365 GDVLFTHANVSLARRELGYKPTTNLQTGLKKFVRWY 400
G L + RELGY+P + GL + VRWY
Sbjct: 276 GHDLRYSLDGGKIERELGYRPQVSFADGLARTVRWY 311
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 138/345 (40%), Gaps = 46/345 (13%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDIN 134
+L+TG AGFVG+H++ L G V +DNF T KR + ++ D+
Sbjct: 8 ILITGGAGFVGSHLTDKLMMDGHEVTVVDNFF----TGRKRNVEHWIGHENFELINHDVV 63
Query: 135 DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQPAI 194
+ L +E + HLA+ A M NP+ + +N G +N+L K + +
Sbjct: 64 EPLYIE-------VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR--L 114
Query: 195 IWASSSSVYGLNKKIPFSEK----DRTDQPSSLYAATKKAGEEIAHTYNHIYGLSITGLR 250
+ AS+S VYG + P SE P + Y K+ E + + Y G+ + R
Sbjct: 115 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVAR 174
Query: 251 FFTVYGPW-----GRPDMVYFFFTKNILKRKPVMIFEGPNHATVARDFTYIDDIVKGCLA 305
F +GP GR V F L+ +P+ ++ + R F Y+ D+V G +A
Sbjct: 175 IFNTFGPRMHMNDGR---VVSNFILQALQGEPLTVY---GSGSQTRAFQYVSDLVNGLVA 228
Query: 306 ALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXXXXXXXPMPANG 365
++ NLGN + + A
Sbjct: 229 LMNSNVSSP--------------VNLGNPEEHTILEFAQLIKNLVGSGSEIQFLS-EAQD 273
Query: 366 DVLFTHANVSLARRELGYKPTTNLQTGLKKFVRWY---LDYYSDS 407
D ++ A+ LG++P L+ GL K + ++ L+Y +++
Sbjct: 274 DPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANN 318
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 146/330 (44%), Gaps = 26/330 (7%)
Query: 75 VLVTGAAGFVGTH-VSAALRR-RGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGD 132
+LVTG AGF+G++ V L+ ++ D Y +L + S+ + + V+G+
Sbjct: 27 ILVTGGAGFIGSNFVHYXLQSYETYKIINFDALT--YSGNLNNVK-SIQDHPNYYFVKGE 83
Query: 133 INDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQP 192
I + LLE + +++ AA++ V +++NP+ + ++N+ G V LLE K P
Sbjct: 84 IQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKY-PHI 142
Query: 193 AIIWASSSSVYG-LNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLSITGLRF 251
++ S+ VYG L K F+E+ P+S Y+++K + + IA Y Y L + R
Sbjct: 143 KLVQVSTDEVYGSLGKTGRFTEETPL-APNSPYSSSKASADXIALAYYKTYQLPVIVTRC 201
Query: 252 FTVYGPWGRPDMVYFFFTKNILKRKPVMIF-EGPNHATVARDFTYIDDIVKGCLAALDXX 310
YGP+ P+ + N L+ K + ++ +G N RD+ ++ D C +A+D
Sbjct: 202 SNNYGPYQYPEKLIPLXVTNALEGKKLPLYGDGLN----VRDWLHVTD---HC-SAIDVV 253
Query: 311 XXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXXXXXXXPMPANGDVLFT 370
V+N+G + + ++V G
Sbjct: 254 LHKGRVG---------EVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDRRY 304
Query: 371 HANVSLARRELGYKPTTNLQTGLKKFVRWY 400
N + E ++P + GL++ V+WY
Sbjct: 305 AINAEKXKNEFDWEPKYTFEQGLQETVQWY 334
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 138/354 (38%), Gaps = 48/354 (13%)
Query: 75 VLVTGAAGFVGTHV-SAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDI 133
+L+TG AGF+G+ V ++ D VV +D Y +L+ + + E DI
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLT--YAGNLE-SLSDISESNRYNFEHADI 59
Query: 134 NDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQPA 193
DS + ++F + VMHLAA++ V ++ P +++ +NI G LLE +
Sbjct: 60 CDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARK------ 113
Query: 194 IIWA---------------SSSSVYGL---------NKKIPFSEKDRTDQPSSLYAATKK 229
W+ S+ VYG + +P + PSS Y+A+K
Sbjct: 114 -YWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKA 172
Query: 230 AGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMVYFFFTKNILKRKPVMIFEGPNHATV 289
+ + + + YGL YGP+ P+ + N L+ KP+ I+ +
Sbjct: 173 SSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQ--- 229
Query: 290 ARDFTYIDDIVKGC-LAALDXXXXXXXXXXXXXXXXQLR-VFNLGNKSPEPVGKLVSXXX 347
RD+ Y++D + + + L VF + + E V K S
Sbjct: 230 IRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYRE 289
Query: 348 XXXXXXXXXXXXPMPANGDVLFTHANVSLARRELGYKPTTNLQTGLKKFVRWYL 401
A + RELG+KP ++G++K V WYL
Sbjct: 290 QITYVADRPGHDRRYA--------IDAGKISRELGWKPLETFESGIRKTVEWYL 335
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 139/340 (40%), Gaps = 24/340 (7%)
Query: 75 VLVTGAAGFVGTH-VSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEG-D 132
+L+TG AGF+G+ V + D VV +D Y + + ER F E D
Sbjct: 4 ILITGGAGFIGSALVRYIINETSDAVVVVDKLT-YAGNLMSLAPVAQSER---FAFEKVD 59
Query: 133 INDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACK------ 186
I D L ++F + VMHLAA++ V ++ P +++ +NI G LLEA +
Sbjct: 60 ICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNAL 119
Query: 187 TANPQPAIIW--ASSSSVYG-LNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYG 243
T + + A + S+ VYG L+ F + PSS Y+A+K + + + + YG
Sbjct: 120 TEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 244 LSITGLRFFTVYGPWGRPDMVYFFFTKNILKRKPVMIFEGPNHATVARDFTYIDDIVKG- 302
L YGP+ P+ + N L K + ++ + RD+ Y++D +
Sbjct: 180 LPTLITNCSNNYGPYHFPEKLIPLMILNALAGKSLPVY---GNGQQIRDWLYVEDHARAL 236
Query: 303 -CLAALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXXXXXXXPM 361
C+A + + ++ E + +L
Sbjct: 237 YCVAT----TGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPHGVAHYRDLITFVA 292
Query: 362 PANGDVLFTHANVSLARRELGYKPTTNLQTGLKKFVRWYL 401
G L + S RELG P ++G++K V+WYL
Sbjct: 293 DRPGHDLRYAIDASKIARELGCVPQETFESGMRKTVQWYL 332
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 110/247 (44%), Gaps = 37/247 (14%)
Query: 71 GGHI--VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFV 128
G H+ V +TG G +G+H++ L RGD VVG+DNF + R R L + +
Sbjct: 18 GSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNF------ATGR-REHLKDHPNLTF 70
Query: 129 VEGDINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVN---SNIAGFVNLLEAC 185
VEG I D L+ +L ++ V+H AA + K+P + N +N G N+++A
Sbjct: 71 VEGSIADHALVNQLIGDLQPDAVVHTAA------SYKDPDDWYNDTLTNCVGGSNVVQAA 124
Query: 186 KTANPQPAIIWASSSSVYGLNKKIPFSEKDRTDQP----SSLYAATKKAGEEIAHTYNHI 241
K N ++ ++ YG+ P + R D P +S YA +K A E+ Y
Sbjct: 125 KKNNVG-RFVYFQTALCYGVK---PIQQPVRLDHPRNPANSSYAISKSANED----YLEY 176
Query: 242 YGLSITGLRFFTVYGPWGRPDMVYFFFTKNILKRKPVMIFEGPNHATVARDFTYIDDIVK 301
GL R V GP + FF + +K + RDF ++ D+ +
Sbjct: 177 SGLDFVTFRLANVVGPRNVSGPLPIFFQRLSEGKKCFV-------TKARRDFVFVKDLAR 229
Query: 302 GCLAALD 308
+ A+D
Sbjct: 230 ATVRAVD 236
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 120/250 (48%), Gaps = 36/250 (14%)
Query: 75 VLVTGAAGFVGTHVSAALRRR--GDGVVGLDNFNDYYDTSLKRGRASLLERAGVF----- 127
+L+TG AGFVG++++ + VV LD F +T R S L G F
Sbjct: 13 ILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS--NTLFSNNRPSSL---GHFKNLIG 67
Query: 128 ----VVEGDINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLE 183
V+ DIN+ L L +L L F ++ H AA + M N + +N F+NLLE
Sbjct: 68 FKGEVIAADINNPLDLRRLEKL-HFDYLFHQAAVSDT--TMLNQELVMKTNYQAFLNLLE 124
Query: 184 ACKTANPQPAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEE--IAHTYNHI 241
++ + +I+ASS+ VYG N K P + + + P ++Y +K +E ++H+ +++
Sbjct: 125 IARS--KKAKVIYASSAGVYG-NTKAP-NVVGKNESPENVYGFSKLCMDEFVLSHSNDNV 180
Query: 242 YGLSITGLRFFTVYGPW----GRPDMVYFFFTKNILKRKPVMIFEGPNHATVARDFTYID 297
GLR+F VYGP + + + K V +FE RDF YI+
Sbjct: 181 Q----VGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFE---FGEQLRDFVYIE 233
Query: 298 DIVKGCLAAL 307
D+++ + A+
Sbjct: 234 DVIQANVKAM 243
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 78/342 (22%), Positives = 133/342 (38%), Gaps = 40/342 (11%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDIN 134
+L+TG AGFVG+H++ L G V +DNF T KR + ++ D+
Sbjct: 30 ILITGGAGFVGSHLTDKLXXDGHEVTVVDNFF----TGRKRNVEHWIGHENFELINHDVV 85
Query: 135 DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQPAI 194
+ L +E + HLA+ A NP+ + +N G +N L K + +
Sbjct: 86 EPLYIE-------VDQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVGAR--L 136
Query: 195 IWASSSSVYGLNKKIPFSEK----DRTDQPSSLYAATKKAGEEIAHTYNHIYGLSITGLR 250
+ AS+S VYG + P SE P + Y K+ E + Y G+ + R
Sbjct: 137 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEVRVAR 196
Query: 251 FFTVYGPWGRPD--MVYFFFTKNILKRKPVMIFEGPNHATVARDFTYIDDIVKGCLAALD 308
F +GP + V F L+ +P+ ++ + R F Y+ D+V G +A +
Sbjct: 197 IFNTFGPRXHXNDGRVVSNFILQALQGEPLTVY---GSGSQTRAFQYVSDLVNGLVALXN 253
Query: 309 XXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXXXXXXXPMPANGDVL 368
NLGN + + A D
Sbjct: 254 SNVSSP--------------VNLGNPEEHTILEFAQLIKNLVGSGSEIQFL-SEAQDDPQ 298
Query: 369 FTHANVSLARRELGYKPTTNLQTGLKKFVRWY---LDYYSDS 407
++ A+ LG++P L+ GL K + ++ L+Y +++
Sbjct: 299 KRKPDIKKAKLXLGWEPVVPLEEGLNKAIHYFRKELEYQANN 340
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 112/258 (43%), Gaps = 33/258 (12%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASL--LERAGVF-VVEG 131
+L+TG GF+G+++++ +G ++ DN S K +L L G F V G
Sbjct: 4 LLITGGCGFLGSNLASFALSQGIDLIVFDNL------SRKGATDNLHWLSSLGNFEFVHG 57
Query: 132 DINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQ 191
DI + + +L HLA Q + ++ NP N+ G +NLLEA + N
Sbjct: 58 DIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSN 117
Query: 192 PAIIWASSSSVYGLNKKIPFSEKDR----TDQPS-----------SLYAATKKAGEEIAH 236
II++S++ VYG ++ ++E + D+P+ S Y +K A ++
Sbjct: 118 CNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYML 177
Query: 237 TYNHIYGLSITGLRFFTVYGPWGRPDMVYFFFTKNILKRKPVMIFEGPN-------HATV 289
Y I+GL+ R ++YG GR Y +K V I G N +
Sbjct: 178 DYARIFGLNTVVFRHSSMYG--GRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQ 235
Query: 290 ARDFTYIDDIVKGCLAAL 307
RD + +D++ AL
Sbjct: 236 VRDVLHAEDMISLYFTAL 253
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 101/243 (41%), Gaps = 29/243 (11%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDIN 134
+ +TGA GF+ +H++ L+ G V+ D + + T +F E +
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE------------DMFCDEFHLV 79
Query: 135 DSLLLEKLFNLVK-FSHVMHLAAQ-AGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQP 192
D ++E + + HV +LAA G+ + N + +N N++EA + N
Sbjct: 80 DLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARI-NGIK 138
Query: 193 AIIWASSSSVYGLNKK-----IPFSEKDR-TDQPSSLYAATKKAGEEIAHTYNHIYGLSI 246
+ASS+ +Y K+ + E D +P Y K A EE+ YN +G+
Sbjct: 139 RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIEC 198
Query: 247 TGLRFFTVYGPW-----GRPDMVYFFFTKNILKRKPVMIFEGPNHATVARDFTYIDDIVK 301
RF +YGP+ GR F K + FE R FT+ID+ V+
Sbjct: 199 RIGRFHNIYGPFGTWKGGREKAPAAFCRK---AQTSTDRFEMWGDGLQTRSFTFIDECVE 255
Query: 302 GCL 304
G L
Sbjct: 256 GVL 258
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 101/243 (41%), Gaps = 29/243 (11%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDIN 134
+ +TGA GF+ +H++ L+ G V+ D + + T +F E +
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE------------DMFCDEFHLV 79
Query: 135 DSLLLEKLFNLVK-FSHVMHLAAQ-AGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQP 192
D ++E + + HV +LAA G+ + N + +N N++EA + N
Sbjct: 80 DLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARI-NGIK 138
Query: 193 AIIWASSSSVYGLNKK-----IPFSEKDR-TDQPSSLYAATKKAGEEIAHTYNHIYGLSI 246
+ASS+ +Y K+ + E D +P Y K A EE+ YN +G+
Sbjct: 139 RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIEC 198
Query: 247 TGLRFFTVYGPW-----GRPDMVYFFFTKNILKRKPVMIFEGPNHATVARDFTYIDDIVK 301
RF +YGP+ GR F K + FE R FT+ID+ V+
Sbjct: 199 RIGRFHNIYGPFGTWKGGREAAPAAFCRK---AQTSTDRFEMWGDGLQTRSFTFIDECVE 255
Query: 302 GCL 304
G L
Sbjct: 256 GVL 258
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 101/243 (41%), Gaps = 29/243 (11%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDIN 134
+ +TGA GF+ +H++ L+ G V+ D + + T +F E +
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE------------DMFCDEFHLV 79
Query: 135 DSLLLEKLFNLVK-FSHVMHLAAQ-AGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQP 192
D ++E + + HV +LAA G+ + N + +N N++EA + N
Sbjct: 80 DLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARI-NGIK 138
Query: 193 AIIWASSSSVYGLNKK-----IPFSEKDR-TDQPSSLYAATKKAGEEIAHTYNHIYGLSI 246
+ASS+ +Y K+ + E D +P Y + A EE+ YN +G+
Sbjct: 139 RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLERLATEELCKHYNKDFGIEC 198
Query: 247 TGLRFFTVYGPW-----GRPDMVYFFFTKNILKRKPVMIFEGPNHATVARDFTYIDDIVK 301
RF +YGP+ GR F K + FE R FT+ID+ V+
Sbjct: 199 RIGRFHNIYGPFGTWKGGREKAPAAFCRK---AQTSTDRFEMWGDGLQTRSFTFIDECVE 255
Query: 302 GCL 304
G L
Sbjct: 256 GVL 258
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 101/243 (41%), Gaps = 29/243 (11%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDIN 134
+ +TGA GF+ +H++ L+ G V+ D + + T +F E +
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE------------DMFCDEFHLV 79
Query: 135 DSLLLEKLFNLVK-FSHVMHLAAQ-AGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQP 192
D ++E + + HV +LAA G+ + N + +N N++EA + N
Sbjct: 80 DLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARI-NGIK 138
Query: 193 AIIWASSSSVYGLNKK-----IPFSEKDR-TDQPSSLYAATKKAGEEIAHTYNHIYGLSI 246
+ASS+ +Y K+ + E D +P + K A EE+ YN +G+
Sbjct: 139 RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIEC 198
Query: 247 TGLRFFTVYGPW-----GRPDMVYFFFTKNILKRKPVMIFEGPNHATVARDFTYIDDIVK 301
RF +YGP+ GR F K + FE R FT+ID+ V+
Sbjct: 199 RIGRFHNIYGPFGTWKGGREKAPAAFCRK---AQTSTDRFEMWGDGLQTRSFTFIDECVE 255
Query: 302 GCL 304
G L
Sbjct: 256 GVL 258
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 23/191 (12%)
Query: 71 GGHI-VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVV 129
G H+ +L+TG AG +G+++ +G ++ +DNF R L AG+ V+
Sbjct: 18 GSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA-------TGKREVLPPVAGLSVI 70
Query: 130 EGDINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVN---SNIAGFVNLLEACK 186
EG + D+ LLE+ F+ K +HV+H AA A K+P + +N+ G +N+ +A
Sbjct: 71 EGSVTDAGLLERAFDSFKPTHVVHSAA------AYKDPDDWAEDAATNVQGSINVAKAAS 124
Query: 187 TANPQPAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLSI 246
A + ++ ++ YG +P D P + Y +K AGE + + + +
Sbjct: 125 KAGVK-RLLNFQTALCYGRPATVPIP-IDSPTAPFTSYGISKTAGE----AFLMMSDVPV 178
Query: 247 TGLRFFTVYGP 257
LR V GP
Sbjct: 179 VSLRLANVTGP 189
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 141/343 (41%), Gaps = 40/343 (11%)
Query: 75 VLVTGAAGFVGTH-VSAALRRRGD-GVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGD 132
++VTG AGF+G++ V D V LD Y + A L +R V +V GD
Sbjct: 7 IIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLT--YAGNKANLEAILGDR--VELVVGD 62
Query: 133 INDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQP 192
I D+ L++KL K ++H AA++ ++ +P ++++N G LLEA + + +
Sbjct: 63 IADAELVDKL--AAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRF 120
Query: 193 AIIWASSSSVYG---LNKKIPF-----SEK---DRTDQPSSLYAATKKAGEEIAHTYNHI 241
+ S+ VYG L + +P EK + PSS Y++TK A + I +
Sbjct: 121 HHV--STDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRS 178
Query: 242 YGLSITGLRFFTVYGPWGRPDMVYFFFTKNILKR-KPVMIFEGPNHATVARDFTYIDDIV 300
+G+ T YGP+ + NIL KP + EG N RD+ + +D
Sbjct: 179 FGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKN----VRDWIHTNDHS 234
Query: 301 KGCLAALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXXXXXXXP 360
G A L + +G + +++
Sbjct: 235 TGVWAILTKGRMG-------------ETYLIGADGEKNNKEVLELILEKMGQPKDAYDHV 281
Query: 361 MPANGDVLFTHANVSLARRELGYKPT-TNLQTGLKKFVRWYLD 402
G L + S R ELG+ P T+ GL++ ++WY D
Sbjct: 282 TDRAGHDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWYTD 324
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 75/340 (22%), Positives = 126/340 (37%), Gaps = 36/340 (10%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDIN 134
V+V G AGFVG+++ L G V + D L + ++ + V E I
Sbjct: 35 VMVVGGAGFVGSNLVKRLLELGVNQVHV------VDNLLSAEKINVPDHPAVRFSETSIT 88
Query: 135 DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQPAI 194
D LL L + ++ +V HLA G + ++ +P++ +N + L E K +
Sbjct: 89 DDALLASLQD--EYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKV 146
Query: 195 IWASSSSVYGLNKKIPFSEKDRTDQPS-----SLYAATKKAGEEIAHTYNHIYGLSITGL 249
+++++ + TD S S Y+ +K GE + Y+ + L
Sbjct: 147 VYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQLPTVRA 206
Query: 250 RFFTVYGP--------W-GRPDMVYFFFTKN-ILKRKPVMIFEGPNHATVARDFTYIDDI 299
RF VYGP W G P V+ T I K M N RDF +++D+
Sbjct: 207 RFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFVEDV 266
Query: 300 VKGCLAALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXXXXXXX 359
G +A V+N+ + + L +
Sbjct: 267 ANGLIACAADGTPGG-------------VYNIASGKETSIADLATKINEITGNNTELDRL 313
Query: 360 PMPANGDVLFTHANVSLARRELGYKPTTNLQTGLKKFVRW 399
P + + ARRELG+ ++ GL+K + W
Sbjct: 314 PKRPWDNSGKRFGSPEKARRELGFSADVSIDDGLRKTIEW 353
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 114/249 (45%), Gaps = 19/249 (7%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDIN 134
+LVTG AG++G+H + L G VV DN + ++ R + + F E D++
Sbjct: 8 ILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIE-KITGKTPAF-HETDVS 65
Query: 135 DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQPAI 194
D L ++F+ + +H AA V ++ P+ Y +N+ ++LL + + I
Sbjct: 66 DERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVK-RI 124
Query: 195 IWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIY-GLSITGLRFFT 253
+++SS++VYG+ ++ P E ++ Y TK E+I + LR+F
Sbjct: 125 VFSSSATVYGVPERSPIDETFPLSA-TNPYGQTKLMAEQILRDVEAADPSWRVATLRYFN 183
Query: 254 VYG----------PWGRPDMVYFFFTKNILKRKPVMIFEGPNH----ATVARDFTYIDDI 299
G P G P+ + + + + + + G ++ T RD+ ++ D+
Sbjct: 184 PVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYIHVVDL 243
Query: 300 VKGCLAALD 308
+G +AALD
Sbjct: 244 ARGHIAALD 252
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/368 (21%), Positives = 133/368 (36%), Gaps = 70/368 (19%)
Query: 75 VLVTGAAGFVGTHVSAALRRRG-------DGVVGLDNFNDYYDTSLKRGRA--------- 118
VLV G AG++G+H AL R D +VG +D+ +T R
Sbjct: 5 VLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKP 64
Query: 119 SLLERAGVFVVEGDINDSLLLEKLFNLV-KFSHVMHLAAQAGVRYAMKNPMSYVNSNIAG 177
+R V GD+ + L +F V+H+ A V ++++P+ Y ++N+ G
Sbjct: 65 PWADRYAALEV-GDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVG 123
Query: 178 FVNLLEACKTANPQPAIIWASSSSVYG------LNKKIPFSEKDRTDQPSSLYAATKKAG 231
+ LL+A + II++SS++++G ++ + + P S Y +K
Sbjct: 124 ILRLLQA-MLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIA 182
Query: 232 EEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMVYFFFTKNIL------------------ 273
E + YG+ LR+F G D+ + L
Sbjct: 183 ERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRL 242
Query: 274 ---------KRKPVMIFEGPN-HATVARDFTYIDDIVKGCLAALDXXXXXXXXXXXXXXX 323
KR P+ + P T RD+ ++ D+ + ALD
Sbjct: 243 TIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKY-- 300
Query: 324 XQLRVFNLGNKSPEPVGKLVSXXXXXXXXXXXXXXXPMPA------NGDVLFTHANVSLA 377
VFNLG V +++ P+P GD + A A
Sbjct: 301 --FSVFNLGTSRGYSVREVIE-------VARKTTGHPIPVRECGRREGDPAYLVAASDKA 351
Query: 378 RRELGYKP 385
R LG+KP
Sbjct: 352 REVLGWKP 359
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 98/239 (41%), Gaps = 36/239 (15%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDG------VVGLDNFNDYYDTSLKRGRASLLERAGVFV 128
+ VTG GF+G +V +++ G+ +G NDY
Sbjct: 5 IAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDY-------------------- 44
Query: 129 VEGDINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTA 188
E ++D L + + L V+HLAA G + +S + N NL +AC
Sbjct: 45 -EYRVSDYTLEDLINQLNDVDAVVHLAATRG----SQGKISEFHDNEILTQNLYDACYEN 99
Query: 189 NPQPAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLSITG 248
N I++AS+ S Y +P++EK+ P Y +K A E I + Y+ GL I
Sbjct: 100 NISN-IVYASTISAYSDETSLPWNEKELP-LPDLXYGVSKLACEHIGNIYSRKKGLCIKN 157
Query: 249 LRFFTVYGPWGRPDMVYFFFTKNILKRKPVMIFEGPNHATVARDFTYIDDIVKGCLAAL 307
LRF +YG + + F + + + + ++ R+F Y D K + AL
Sbjct: 158 LRFAHLYGFNEKNNYXINRFFRQAFHGEQLTLHA---NSVAKREFLYAKDAAKSVIYAL 213
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 82/185 (44%), Gaps = 27/185 (14%)
Query: 71 GGHIVLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVE 130
G H++LVTG+AG VG V AALR +G V G D L +G E
Sbjct: 18 GSHMILVTGSAGRVGRAVVAALRTQGRTVRGFD-----------------LRPSGTGGEE 60
Query: 131 --GDINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTA 188
G + D L ++ S V+HL A A ++ M V N+ G LL+A A
Sbjct: 61 VVGSLEDGQALSD--AIMGVSAVLHLGAFMSWAPADRDRMFAV--NVEGTRRLLDAASAA 116
Query: 189 NPQPAIIWASSSSVYGLNKK--IPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLSI 246
+ ++ASS VY N+ +P +E D P+S Y TK GEE+ + +
Sbjct: 117 GVR-RFVFASSGEVYPENRPEFLPVTE-DHPLCPNSPYGLTKLLGEELVRFHQRSGAMET 174
Query: 247 TGLRF 251
LRF
Sbjct: 175 VILRF 179
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 7/182 (3%)
Query: 72 GHIVLVTGAAGFVGTHVSAALRRRGDGVVGLDNFN-DYYDTSLKRGRASLLERAGVFVVE 130
G L+TG G G +++ L +G V G D + ++ LK L V ++
Sbjct: 3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLK----ELGIENDVKIIH 58
Query: 131 GDINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANP 190
D+ + + + V+ V +LAAQ+ V + + P+ + G + +LEA +T P
Sbjct: 59 MDLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKP 118
Query: 191 QPAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGL-SITGL 249
AS+S ++G ++IP +EK P S YA K G I Y Y + + +G+
Sbjct: 119 DTKFYQASTSEMFGKVQEIPQTEKTPF-YPRSPYAVAKLFGHWITVNYREAYNMFACSGI 177
Query: 250 RF 251
F
Sbjct: 178 LF 179
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 78/351 (22%), Positives = 129/351 (36%), Gaps = 71/351 (20%)
Query: 74 IVLVTGAAGFVGTHVSAALRRRG-DGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGD 132
+++VTG AGF+G+++ AL +G ++ +DN D FV D
Sbjct: 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD----------------GTKFVNLVD 44
Query: 133 INDSLLLEKLFNLVKF---------SHVMHLAAQAGV-----RYAMKNPMSYVNSNIAGF 178
+N + ++K L++ + H A + +Y M N Y
Sbjct: 45 LNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGAXSSTTEWDGKYMMDNNYQYSKE----- 99
Query: 179 VNLLEACKTANPQPAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTY 238
LL C + ++ASS++ YG + F E ++P ++Y +K +E
Sbjct: 100 --LLHYC--LEREIPFLYASSAATYG-GRTSDFIESREYEKPLNVYGYSKFLFDEYVRQI 154
Query: 239 NHIYGLSITGLRFFTVYGPW----GRPDMVYFFFTKNILKRKPVMIFEGPNHATVARDFT 294
I G R+F VYGP G V F + + +FEG + RDF
Sbjct: 155 LPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSEN--FKRDFV 212
Query: 295 YIDDIVKGCLAALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXX 354
Y+ D+ L L+ +FNLG E + V+
Sbjct: 213 YVGDVADVNLWFLENGVSG--------------IFNLGTGRAESF-QAVADATLAYHKKG 257
Query: 355 XXXXXPMPANGDVL------FTHANVSLARRELGYKPTTNLQTGLKKFVRW 399
P P D L FT A+++ R KP + G+ +++ W
Sbjct: 258 QIEYIPFP---DKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAW 305
>pdb|2YY7|A Chain A, Crystal Structure Of Thermolabile L-Threonine
Dehydrogenase From Flavobacterium Frigidimaris Kuc-1
pdb|2YY7|B Chain B, Crystal Structure Of Thermolabile L-Threonine
Dehydrogenase From Flavobacterium Frigidimaris Kuc-1
Length = 312
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 103/242 (42%), Gaps = 34/242 (14%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEG-DI 133
+L+ GA G +GT ++ LR+ + G +N + +++ ++ VV D
Sbjct: 5 ILIIGACGQIGTELTQKLRK----LYGTENV---IASDIRKLNTDVVNSGPFEVVNALDF 57
Query: 134 NDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQPA 193
N +E L + K + + +AA A KNP + N+ ++L A
Sbjct: 58 NQ---IEHLVEVHKITDIYLMAALLSAT-AEKNPAFAWDLNMNSLFHVLN-LAKAKKIKK 112
Query: 194 IIWASSSSVYGLNKKIPFSEKDRTDQ-----PSSLYAATKKAGEEIAHTYNHIYGLSITG 248
I W SS +V+G P + K+ T Q PS++Y +K+AGE Y++IYG+ +
Sbjct: 113 IFWPSSIAVFG-----PTTPKENTPQYTIMEPSTVYGISKQAGERWCEYYHNIYGVDVRS 167
Query: 249 LRFFTVYGPWGRP------DMVYFFFTKNILKRKPVMIFEGPNHATVARDFTYIDDIVKG 302
+R+ + W P D F K I +K +E + Y+DD +
Sbjct: 168 IRYPGLIS-WSTPPGGGTTDYAVDIFYKAIADKK----YECFLSSETKMPMMYMDDAIDA 222
Query: 303 CL 304
+
Sbjct: 223 TI 224
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 25/203 (12%)
Query: 63 SSRPRSRAGGHIVLVTGAAGFVGTHVSAALRRRGD-GVVGLDNFNDYYDTSLKRGRASLL 121
++R R+R VL+ G GF+G H++ L R V GLD +D + L
Sbjct: 9 TARRRTR-----VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD--------AISRFL 55
Query: 122 ERAGVFVVEGDIN-DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVN 180
VEGDI+ S +E +++ K V+ L A A +NP+ + +
Sbjct: 56 NHPHFHFVEGDISIHSEWIE--YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLR 113
Query: 181 LLEACKTANPQPAIIWASSSSVYGLNKKIPFSEKDR------TDQPSSLYAATKKAGEEI 234
++ C + II+ S+S VYG+ F E ++P +Y+ +K+ + +
Sbjct: 114 IIRYC--VKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRV 171
Query: 235 AHTYNHIYGLSITGLRFFTVYGP 257
Y GL T R F GP
Sbjct: 172 IWAYGEKEGLQFTLFRPFNWMGP 194
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 25/203 (12%)
Query: 63 SSRPRSRAGGHIVLVTGAAGFVGTHVSAALRRRGD-GVVGLDNFNDYYDTSLKRGRASLL 121
++R R+R VL+ G GF+G H++ L R V GLD +D + L
Sbjct: 9 TARRRTR-----VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD--------AISRFL 55
Query: 122 ERAGVFVVEGDIN-DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVN 180
VEGDI+ S +E +++ K V+ L A A +NP+ + +
Sbjct: 56 NHPHFHFVEGDISIHSEWIE--YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLR 113
Query: 181 LLEACKTANPQPAIIWASSSSVYGLNKKIPFSEKDR------TDQPSSLYAATKKAGEEI 234
++ C + II+ S+S VYG+ F E ++P +Y+ +K+ + +
Sbjct: 114 IIRYC--VKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRV 171
Query: 235 AHTYNHIYGLSITGLRFFTVYGP 257
Y GL T R F GP
Sbjct: 172 IWAYGEKEGLQFTLFRPFNWMGP 194
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 25/203 (12%)
Query: 63 SSRPRSRAGGHIVLVTGAAGFVGTHVSAALRRRGD-GVVGLDNFNDYYDTSLKRGRASLL 121
++R R+R VL+ G GF+G H++ L R V GLD +D + L
Sbjct: 9 TARRRTR-----VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD--------AISRFL 55
Query: 122 ERAGVFVVEGDIN-DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVN 180
VEGDI+ S +E +++ K V+ L A A +NP+ + +
Sbjct: 56 NHPHFHFVEGDISIHSEWIE--YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLR 113
Query: 181 LLEACKTANPQPAIIWASSSSVYGLNKKIPFSEKDR------TDQPSSLYAATKKAGEEI 234
++ C + II+ S+S VYG+ F E ++P +Y+ +K+ + +
Sbjct: 114 IIRYC--VKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRV 171
Query: 235 AHTYNHIYGLSITGLRFFTVYGP 257
Y GL T R F GP
Sbjct: 172 IWAYGEKEGLQFTLFRPFNWMGP 194
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 25/203 (12%)
Query: 63 SSRPRSRAGGHIVLVTGAAGFVGTHVSAALRRRGD-GVVGLDNFNDYYDTSLKRGRASLL 121
++R R+R VL+ G GF+G H++ L R V GLD +D + L
Sbjct: 9 TARRRTR-----VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD--------AISRFL 55
Query: 122 ERAGVFVVEGDIN-DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVN 180
VEGDI+ S +E +++ K V+ L A A +NP+ + +
Sbjct: 56 NHPHFHFVEGDISIHSEWIE--YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLR 113
Query: 181 LLEACKTANPQPAIIWASSSSVYGLNKKIPFSEKDR------TDQPSSLYAATKKAGEEI 234
++ C + II+ S+S VYG+ F E ++P +Y+ +K+ + +
Sbjct: 114 IIRYC--VKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRV 171
Query: 235 AHTYNHIYGLSITGLRFFTVYGP 257
Y GL T R F GP
Sbjct: 172 IWAYGEKEGLQFTLFRPFNWMGP 194
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/351 (21%), Positives = 129/351 (36%), Gaps = 71/351 (20%)
Query: 74 IVLVTGAAGFVGTHVSAALRRRG-DGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGD 132
+++VTG AGF+G+++ AL +G ++ +DN D FV D
Sbjct: 48 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD----------------GTKFVNLVD 91
Query: 133 INDSLLLEKLFNLVKF---------SHVMHLAAQAGV-----RYAMKNPMSYVNSNIAGF 178
+N + ++K L++ + H A + +Y M N Y
Sbjct: 92 LNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKE----- 146
Query: 179 VNLLEACKTANPQPAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTY 238
LL C + ++ASS++ YG + F E ++P +++ +K +E
Sbjct: 147 --LLHYC--LEREIPFLYASSAATYG-GRTSDFIESREYEKPLNVFGYSKFLFDEYVRQI 201
Query: 239 NHIYGLSITGLRFFTVYGPW----GRPDMVYFFFTKNILKRKPVMIFEGPNHATVARDFT 294
I G R+F VYGP G V F + + +FEG + RDF
Sbjct: 202 LPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSEN--FKRDFV 259
Query: 295 YIDDIVKGCLAALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXX 354
Y+ D+ L L+ +FNLG E + V+
Sbjct: 260 YVGDVADVNLWFLENGVSG--------------IFNLGTGRAESF-QAVADATLAYHKKG 304
Query: 355 XXXXXPMPANGDVL------FTHANVSLARRELGYKPTTNLQTGLKKFVRW 399
P P D L FT A+++ R KP + G+ +++ W
Sbjct: 305 QIEYIPFP---DKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAW 352
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 20/191 (10%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGD-GVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDI 133
VL+ G GF+G H++ L R V GLD +D + L VEGDI
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD--------AISRFLNHPHFHFVEGDI 54
Query: 134 N-DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQP 192
+ S +E +++ K V+ L A A +NP+ + + ++ C +
Sbjct: 55 SIHSEWIE--YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC--VKYRK 110
Query: 193 AIIWASSSSVYGLNKKIPFSEKDR------TDQPSSLYAATKKAGEEIAHTYNHIYGLSI 246
II+ S+S VYG+ F E ++P +Y+ +K+ + + Y GL
Sbjct: 111 RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQF 170
Query: 247 TGLRFFTVYGP 257
T R F GP
Sbjct: 171 TLFRPFNWMGP 181
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 25/203 (12%)
Query: 63 SSRPRSRAGGHIVLVTGAAGFVGTHVSAALRRRGD-GVVGLDNFNDYYDTSLKRGRASLL 121
++R R+R VL+ G GF+G H++ L R V GLD +D + L
Sbjct: 9 TARRRTR-----VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD--------AISRFL 55
Query: 122 ERAGVFVVEGDIN-DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVN 180
VEGDI+ S +E +++ K V+ L A A +NP+ + +
Sbjct: 56 NHPHFHFVEGDISIHSEWIE--YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLR 113
Query: 181 LLEACKTANPQPAIIWASSSSVYGLNKKIPFSEKDR------TDQPSSLYAATKKAGEEI 234
++ C + II+ S++ VYG+ F E ++P +Y+ +K+ + +
Sbjct: 114 IIRYC--VKYRKRIIFPSTAEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRV 171
Query: 235 AHTYNHIYGLSITGLRFFTVYGP 257
Y GL T R F GP
Sbjct: 172 IWAYGEKEGLQFTLFRPFNWMGP 194
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 25/203 (12%)
Query: 63 SSRPRSRAGGHIVLVTGAAGFVGTHVSAALRRRGD-GVVGLDNFNDYYDTSLKRGRASLL 121
++R R+R VL+ G GF+G H++ L R V GLD +D + L
Sbjct: 311 TARRRTR-----VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD--------AISRFL 357
Query: 122 ERAGVFVVEGDIN-DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVN 180
VEGDI+ S +E +++ K V+ L A A +NP+ + +
Sbjct: 358 NHPHFHFVEGDISIHSEWIE--YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLR 415
Query: 181 LLEACKTANPQPAIIWASSSSVYGLNKKIPFSEKDR------TDQPSSLYAATKKAGEEI 234
++ C + II+ S+S VYG+ F E ++P +Y+ +K+ + +
Sbjct: 416 IIRYCVKYRKR--IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRV 473
Query: 235 AHTYNHIYGLSITGLRFFTVYGP 257
Y GL T R F GP
Sbjct: 474 IWAYGEKEGLQFTLFRPFNWMGP 496
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 23/183 (12%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDIN 134
+LVTGAAG VG+ + L V +D D G A E +V D+
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTLAHEV----RLSDIVDL----GAAEAHEE----IVACDLA 52
Query: 135 DSLLLEKLFNLVK-FSHVMHLAAQAGVRYAMKNPMSYV-NSNIAGFVNLLEACKTANPQP 192
D+ + + +LVK ++HL +++ P + + +NI G NL EA + +P
Sbjct: 53 DA---QAVHDLVKDCDGIIHLGG-----VSVERPWNDILQANIIGAYNLYEAARNLG-KP 103
Query: 193 AIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLSITGLRFF 252
I++ASS+ G + + + +P SLY +K GE++A Y H + + +R
Sbjct: 104 RIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHKFDIETLNIRIG 163
Query: 253 TVY 255
+ +
Sbjct: 164 SCF 166
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 16/188 (8%)
Query: 76 LVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVE-GDIN 134
LVTG G G +++ L +G V GL +S R R L G E GD+
Sbjct: 18 LVTGITGQDGAYLAKLLLEKGYRVHGLVARR----SSDTRWRLRELGIEGDIQYEDGDMA 73
Query: 135 DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQPAI 194
D+ +++ + V +LAAQ+ V + P++ + G +LLEA + +P+
Sbjct: 74 DACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRF 133
Query: 195 IWASSSSVYGLNKKIPFSEKDRTDQ-----PSSLYAATKKAGEEIAHTYNHIYGLSITGL 249
AS+S ++GL + +R D+ P S Y K G I Y +GL +
Sbjct: 134 YQASTSEMFGL------IQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHASSG 187
Query: 250 RFFTVYGP 257
F P
Sbjct: 188 ILFNHESP 195
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 76/351 (21%), Positives = 129/351 (36%), Gaps = 34/351 (9%)
Query: 72 GHIVLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEG 131
G V VTG GF G +S L+ G V G + + R + G+ G
Sbjct: 9 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVA----DGMQSEIG 64
Query: 132 DINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQ 191
DI D L + + V H+AAQ VR + P+ ++N+ G V LLEA +
Sbjct: 65 DIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGV 124
Query: 192 PAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIY--------- 242
A++ +S Y + I ++ Y+ +K E + +Y + +
Sbjct: 125 KAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQH 184
Query: 243 GLSITGLRFFTVY--GPWGR----PDMVYFFFTKNILKRKPVMIFEGPNHATVARDFTYI 296
G ++ +R V G W PD++ F + +PV+I P HA R + ++
Sbjct: 185 GTAVATVRAGNVIGGGDWALDRIVPDILRAF-----EQSQPVII-RNP-HAI--RPWQHV 235
Query: 297 DDIVKGCLAALDXXXXXXXXXXXXXXXXQLRVFNLGNKSPEPVGKLVSXXXXXXXXXXXX 356
+ + G L F + PV +V
Sbjct: 236 LEPLSGYLLLAQKLYTDGAEYAEGWN------FGPNDADATPVKNIVEQMVKYWGEGASW 289
Query: 357 XXXPMPANGDVLFTHANVSLARRELGYKPTTNLQTGLKKFVRWYLDYYSDS 407
+ + + S A+ +LG+ P NL T L+ V W+ ++ S +
Sbjct: 290 QLDGNAHPHEAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSGT 340
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 91/225 (40%), Gaps = 20/225 (8%)
Query: 72 GHIVLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEG 131
G V VTG GF G+ +S L G V G + + R + L + + G
Sbjct: 9 GKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIVRLNDLMESHI----G 64
Query: 132 DINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQ 191
DI D L K V H+AAQ VR + + P+ ++N+ G V+LLE K
Sbjct: 65 DIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETVKQVGNI 124
Query: 192 PAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIY--------- 242
A++ +S Y + + ++ Y+ +K E +A + + +
Sbjct: 125 KAVVNITSDKCYDNREWVWGYRENEPMGGYDPYSNSKGCAELVASAFRNSFFNPANYEQH 184
Query: 243 GLSITGLRFFTVY--GPWGR----PDMVYFFF-TKNILKRKPVMI 280
G+ + +R V G W + PD++ F + ++ R P I
Sbjct: 185 GVGLASVRAGNVIGGGDWAKDRLIPDILRSFENNQQVIIRNPYSI 229
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 80/187 (42%), Gaps = 32/187 (17%)
Query: 74 IVLVTGAAGFVGTHVSAALRRR--GDGVVGLDNFNDYYDTSLKRGRASLLER--AGVFVV 129
++LVTG++G +GT + L + V+ D +++R G+ +
Sbjct: 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASD----------------IVQRDTGGIKFI 44
Query: 130 EGDINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTAN 189
D+++ +++ + HLA + K+P N+ G N+LEA K
Sbjct: 45 TLDVSNRDEIDRAVEKYSIDAIFHLAGILSAK-GEKDPALAYKVNMNGTYNILEAAKQHR 103
Query: 190 PQPAIIWASSSSVYGLNKKIPFSEKDRT-----DQPSSLYAATKKAGEEIAHTYNHIYGL 244
+ +I S+ V+G P + K++ +P ++Y TK A E + Y +GL
Sbjct: 104 VEKVVI-PSTIGVFG-----PETPKNKVPSITITRPRTMYGVTKIAAELLGQYYYEKFGL 157
Query: 245 SITGLRF 251
+ LR+
Sbjct: 158 DVRSLRY 164
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 12/186 (6%)
Query: 74 IVLVTGAAGFVGTHVSAALRRRGDGVVGL----DNFNDYYDTSLKRGRASLLERAGVFVV 129
+ L+TG G G++++ L +G V G+ +FN + + + + +
Sbjct: 3 VALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHY- 61
Query: 130 EGDINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACK--T 187
GD++D+ L ++ V+ V +L A + V + ++P + + G + LLEA +
Sbjct: 62 -GDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLG 120
Query: 188 ANPQPAIIWASSSSVYGLNKKIPFSEKDRTD-QPSSLYAATKKAGEEIAHTYNHIYGL-S 245
+ AS+S +YGL ++IP +K+ T P S YA K I Y YG+ +
Sbjct: 121 LEKKTRFYQASTSELYGLVQEIP--QKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYA 178
Query: 246 ITGLRF 251
G+ F
Sbjct: 179 CNGILF 184
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 103/250 (41%), Gaps = 32/250 (12%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGD-GVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDI 133
VL+ G GF+G H+S + D V G+D D +K R EGDI
Sbjct: 27 VLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFF--------EGDI 78
Query: 134 N-DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQP 192
+ +E +++ K ++ L A A +K P+ + + ++ +
Sbjct: 79 TINKEWVE--YHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKH- 135
Query: 193 AIIWASSSSVYGLNKKIPFSEKDRT------DQPSSLYAATKKAGEEIAHTYNHIYGLSI 246
+++ S+S VYG+ F ++P +YA +K+ + + Y + GL+
Sbjct: 136 -LVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRVIWGYG-MEGLNF 193
Query: 247 TGLRFF--------TVYGPWGRPDMVYFFFTKNILKRKPVMIFEGPNHATVARDFTYIDD 298
T R F ++Y P V F +I++ + + + +G + R FTY+DD
Sbjct: 194 TLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDG---GSQKRAFTYVDD 250
Query: 299 IVKGCLAALD 308
+ + ++
Sbjct: 251 GISALMKIIE 260
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 96/248 (38%), Gaps = 41/248 (16%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDIN 134
V + G G VG+ + L +RGD + L R R L ++
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVL------------RTRDEL-----------NLL 42
Query: 135 DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKN-PMSYVNSNIAGFVNLLEACKTANPQPA 193
DS + F + V AA+ G A P ++ N+ N++ A N
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ-NDVNK 101
Query: 194 IIWASSSSVYGLNKKIPFSEKDR---TDQPSSL-YAATKKAGEEIAHTYNHIYGLSITGL 249
+++ SS +Y K P +E + T +P++ YA K AG ++ +YN YG +
Sbjct: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSV 161
Query: 250 RFFTVYGPWGR---------PDMVYFFFTKNILKRKPVMIFEGPNHATVARDFTYIDDIV 300
+YGP P ++ F K V+++ T R+F ++DD+
Sbjct: 162 MPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVW---GSGTPMREFLHVDDMA 218
Query: 301 KGCLAALD 308
+ ++
Sbjct: 219 AASIHVME 226
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 77/183 (42%), Gaps = 24/183 (13%)
Query: 74 IVLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDI 133
++LVTG++G +GT + L + Y ++ + G+ + D+
Sbjct: 1 MILVTGSSGQIGTELVPYLAEK------------YGKKNVIASDIVQRDTGGIKFITLDV 48
Query: 134 NDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQPA 193
++ +++ + HLA + K+P N+ G N+LEA K +
Sbjct: 49 SNRDEIDRAVEKYSIDAIFHLAGILSAK-GEKDPALAYKVNMNGTYNILEAAKQHRVEKV 107
Query: 194 IIWASSSSVYGLNKKIPFSEKDRT-----DQPSSLYAATKKAGEEIAHTYNHIYGLSITG 248
+I S+ V+G P + K++ +P +++ TK A E + Y +GL +
Sbjct: 108 VI-PSTIGVFG-----PETPKNKVPSITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRS 161
Query: 249 LRF 251
LR+
Sbjct: 162 LRY 164
>pdb|3ST7|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
pdb|3VHR|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus In Space Group
C2221
Length = 369
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 93/236 (39%), Gaps = 55/236 (23%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDIN 134
+++TGA GFVG ++ A L D + F + ++ + LE A
Sbjct: 3 IVITGAKGFVGKNLKADLTSTTDHHI----FEVH-----RQTKEEELESA---------- 43
Query: 135 DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQPAI 194
L+K ++HLA GV ++ + N++ ++L+ +PAI
Sbjct: 44 ----------LLKADFIVHLA---GVNRP-EHDKEFSLGNVSYLDHVLDILTRNTKKPAI 89
Query: 195 IWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLSITGLRFFTV 254
+ +SS D P Y +K GE++ Y YG ++ R+ +
Sbjct: 90 LLSSSIQA-------------TQDNP---YGESKLQGEQLLREYAEEYGNTVYIYRWPNL 133
Query: 255 YGPWGRPDM--VYFFFTKNILKRKPVMIFEGPNHATVARDFTYIDDIVKGCLAALD 308
+G W +P+ V F I + + + + N V Y+DDIV A++
Sbjct: 134 FGKWCKPNYNSVIATFCYKIARNEEIQV----NDRNVELTLNYVDDIVAEIKRAIE 185
>pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
Length = 369
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 93/236 (39%), Gaps = 55/236 (23%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDIN 134
+++TGA GFVG ++ A L D + F + ++ + LE A
Sbjct: 3 IVITGAKGFVGKNLKADLTSTTDHHI----FEVH-----RQTKEEELESA---------- 43
Query: 135 DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQPAI 194
L+K ++HLA GV ++ + N++ ++L+ +PAI
Sbjct: 44 ----------LLKADFIVHLA---GVNRP-EHDKEFSLGNVSYLDHVLDILTRNTKKPAI 89
Query: 195 IWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLSITGLRFFTV 254
+ +SS D P Y +K GE++ Y YG ++ R+ +
Sbjct: 90 LLSSSIQA-------------TQDNP---YGESKLQGEQLLREYAEEYGNTVYIYRWPNL 133
Query: 255 YGPWGRPDM--VYFFFTKNILKRKPVMIFEGPNHATVARDFTYIDDIVKGCLAALD 308
+G W +P+ V F I + + + + N V Y+DDIV A++
Sbjct: 134 FGKWCKPNYNSVIATFCYKIARNEEIQV----NDRNVELTLNYVDDIVAEIKRAIE 185
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 25/180 (13%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAG--VFVVEGD 132
+LVTGAAG +G +R R + + L+ S L+ AG V+ D
Sbjct: 6 LLVTGAAGQLGR----VMRERLAPMAEI----------LRLADLSPLDPAGPNEECVQCD 51
Query: 133 INDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYV-NSNIAGFVNLLEACKTANPQ 191
+ D+ + + + ++HL +++ P + NI G NL EA + A+ Q
Sbjct: 52 LADANAVNAM--VAGCDGIVHLGG-----ISVEKPFEQILQGNIIGLYNLYEAAR-AHGQ 103
Query: 192 PAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLSITGLRF 251
P I++ASS+ G + D +P LY +K GE +A Y +G +R
Sbjct: 104 PRIVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCFGENLARMYFDKFGQETALVRI 163
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 96/247 (38%), Gaps = 39/247 (15%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDIN 134
V + G G VG+ + L +RGD + L R R L ++
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVL------------RTRDEL-----------NLL 42
Query: 135 DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKN-PMSYVNSNIAGFVNLLEACKTANPQPA 193
DS + F + V AA+ G A P ++ N+ N++ A N
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ-NDVNK 101
Query: 194 IIWASSSSVYGLNKKIPFSEKDR---TDQPSSL-YAATKKAGEEIAHTYNHIYGLSITGL 249
+++ SS +Y K P +E + T +P++ YA K AG ++ +YN YG +
Sbjct: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSV 161
Query: 250 RFFTVYGPWG--RPDMVYFF------FTKNILKRKPVMIFEGPNHATVARDFTYIDDIVK 301
+YGP P + F + + P ++ G T R+F ++DD+
Sbjct: 162 MPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGS--GTPMREFLHVDDMAA 219
Query: 302 GCLAALD 308
+ ++
Sbjct: 220 ASIHVME 226
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 96/247 (38%), Gaps = 39/247 (15%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDIN 134
V + G G VG+ + L +RGD + L R R L ++
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVL------------RTRDEL-----------NLL 42
Query: 135 DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKN-PMSYVNSNIAGFVNLLEACKTANPQPA 193
DS + F + V AA+ G A P ++ N+ N++ A N
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ-NDVNK 101
Query: 194 IIWASSSSVYGLNKKIPFSEKDR---TDQPSSL-YAATKKAGEEIAHTYNHIYGLSITGL 249
+++ SS +Y K P +E + T +P++ YA K AG ++ +YN YG +
Sbjct: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSV 161
Query: 250 RFFTVYGPWG--RPDMVYFF------FTKNILKRKPVMIFEGPNHATVARDFTYIDDIVK 301
+YGP P + F + + P ++ G T R+F ++DD+
Sbjct: 162 MPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGS--GTPMREFLHVDDMAA 219
Query: 302 GCLAALD 308
+ ++
Sbjct: 220 ASIHVME 226
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 14/188 (7%)
Query: 74 IVLVTGAAGFVGTHVSAALRRRGDGVVGL----DNFNDYYDTSLKRGRASLLERAGVFVV 129
I L+TG G G++++ L +G V GL NFN + ++ +A + +
Sbjct: 30 IALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNV-NKALMKLH 88
Query: 130 EGDINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACK--T 187
D+ D+ L + +++K V +LAAQ+ V + + P + G + LLEA + T
Sbjct: 89 YADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHT 148
Query: 188 ANPQPAIIW--ASSSSVYGLNKKIPFSEKDRTD-QPSSLYAATKKAGEEIAHTYNHIYGL 244
+ + + A SS ++G P + + T P S YAA+K A Y YGL
Sbjct: 149 IDSGRTVKYYQAGSSEMFG---STPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGL 205
Query: 245 -SITGLRF 251
+ G+ F
Sbjct: 206 FACNGILF 213
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 26/144 (18%)
Query: 131 GDINDSLLLEKL-FNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTAN 189
GD+ D LE+L + L +H AA V A NP+ + +NI G N++ AC
Sbjct: 77 GDVRD---LERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINAC---- 129
Query: 190 PQPAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLSITG- 248
+ + S V L+ D+ P +LY ATK +++ + N+ G S T
Sbjct: 130 -----LKNAISQVIALS-------TDKAANPINLYGATKLCSDKLFVSANNFKGSSQTQF 177
Query: 249 --LRFFTVYGPWGRPDMVYFFFTK 270
+R+ V G G V FF K
Sbjct: 178 SVVRYGNVVGSRGS---VVPFFKK 198
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 96/247 (38%), Gaps = 39/247 (15%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDIN 134
V + G G VG+ + L +RGD + L R R L ++
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVL------------RTRDEL-----------NLL 42
Query: 135 DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKN-PMSYVNSNIAGFVNLLEACKTANPQPA 193
DS + F + V AA+ G A P ++ N+ N++ A N
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ-NDVNK 101
Query: 194 IIWASSSSVYGLNKKIPFSEKDR---TDQPSSL-YAATKKAGEEIAHTYNHIYGLSITGL 249
+++ SS +Y K P +E + T +P++ YA + AG ++ +YN YG +
Sbjct: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIARIAGIKLCESYNRQYGRDYRSV 161
Query: 250 RFFTVYGPWG--RPDMVYFF------FTKNILKRKPVMIFEGPNHATVARDFTYIDDIVK 301
+YGP P + F + + P ++ G T R+F ++DD+
Sbjct: 162 MPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGS--GTPMREFLHVDDMAA 219
Query: 302 GCLAALD 308
+ ++
Sbjct: 220 ASIHVME 226
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 96/247 (38%), Gaps = 39/247 (15%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDIN 134
V + G G VG+ + L +RGD + L R R L ++
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVL------------RTRDEL-----------NLL 42
Query: 135 DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKN-PMSYVNSNIAGFVNLLEACKTANPQPA 193
DS + F + V AA+ G A P ++ N+ N++ A N
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ-NDVNK 101
Query: 194 IIWASSSSVYGLNKKIPFSEKDR---TDQPSSL-YAATKKAGEEIAHTYNHIYGLSITGL 249
+++ +S +Y K P +E + T +P++ YA K AG ++ +YN YG +
Sbjct: 102 LLFLGASCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSV 161
Query: 250 RFFTVYGPWG--RPDMVYFF------FTKNILKRKPVMIFEGPNHATVARDFTYIDDIVK 301
+YGP P + F + + P ++ G T R+F ++DD+
Sbjct: 162 MPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGS--GTPMREFLHVDDMAA 219
Query: 302 GCLAALD 308
+ ++
Sbjct: 220 ASIHVME 226
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 95/250 (38%), Gaps = 45/250 (18%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDIN 134
V + G G VG+ + L +RGD + L R R L ++
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVL------------RTRDEL-----------NLL 42
Query: 135 DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKN-PMSYVNSNIAGFVNLLEACKTANPQPA 193
DS + F + V AA+ G A P ++ N+ N++ A N
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ-NDVNK 101
Query: 194 IIWASSSSVYGLNKKIPFSEKDR-------TDQPSSLYAATKKAGEEIAHTYNHIYGLSI 246
+++ SS +Y K P +E + T++P ++ K AG ++ +YN YG
Sbjct: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPEAI---AKIAGIKLCESYNRQYGRDY 158
Query: 247 TGLRFFTVYGPWG--RPDMVYFF------FTKNILKRKPVMIFEGPNHATVARDFTYIDD 298
+ +YGP P + F + + P ++ G T R+F ++DD
Sbjct: 159 RSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGS--GTPMREFLHVDD 216
Query: 299 IVKGCLAALD 308
+ + ++
Sbjct: 217 MAAASIHVME 226
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 25/180 (13%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAG--VFVVEGD 132
+LVTGAAG +G +R R + + L+ S L+ AG V+ D
Sbjct: 6 LLVTGAAGQLGR----VMRERLAPMAEI----------LRLADLSPLDPAGPNEECVQCD 51
Query: 133 INDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYV-NSNIAGFVNLLEACKTANPQ 191
+ D+ + + + ++HL +++ P + NI G NL EA + A+ Q
Sbjct: 52 LADANAVNAM--VAGCDGIVHLGG-----ISVEKPFEQILQGNIIGLYNLYEAAR-AHGQ 103
Query: 192 PAIIWASSSSVYGLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLSITGLRF 251
P I++ASS+ G + D +P L +K GE +A Y +G +R
Sbjct: 104 PRIVFASSNHTIGYYPQTERLGPDVPARPDGLAGVSKCFGENLARMYFDKFGQETALVRI 163
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 19/178 (10%)
Query: 71 GGHIVLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVE 130
G V G GFV + + L ++G V D + L E + +
Sbjct: 8 GKKTACVVGGTGFVASLLVKLLLQKGYAVN--TTVRDPDNQKKVSHLLELQELGDLKIFR 65
Query: 131 GDINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMS-YVNSNIAGFVNLLEACKTAN 189
D+ D L E F V H+A V +A ++P + + I G VN+++AC A
Sbjct: 66 ADLTDELSFEAPIAGCDF--VFHVATP--VHFASEDPENDMIKPAIQGVVNVMKACTRAK 121
Query: 190 PQPAIIWASSSSVYGLNK----KIPFSEKDRTD--------QPSSLYAATKKAGEEIA 235
+I SS++ +N+ + EK+ TD P+ Y A+K E+ A
Sbjct: 122 SVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAA 179
>pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein
Sqd1, With Nad And Udp-Glucose
Length = 404
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 81/215 (37%), Gaps = 31/215 (14%)
Query: 72 GHIVLVTGAAGFVG----THVSAA----------LRRRGDGVVGLDNFNDYYDTSLKRGR 117
G V+V G G+ G H+S +RR D +GL++ + R
Sbjct: 11 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 70
Query: 118 ASLLERAGVFVVEGDINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYV---NSN 174
L + + GDI D L + F + V+H Q Y+M + V ++N
Sbjct: 71 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNN 130
Query: 175 IAGFVNLLEACKTANPQPAIIWASSSSVYGL------NKKIPFSEKDRTD------QPSS 222
+ G +N+L A K + ++ + YG I + RTD Q SS
Sbjct: 131 VIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASS 190
Query: 223 LYAATK-KAGEEIAHTYNHIYGLSITGLRFFTVYG 256
Y +K IA T +G+ T L VYG
Sbjct: 191 FYHLSKVHDSHNIAFTCK-AWGIRATDLNQGVVYG 224
>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-SulfoquinovoseUDP-Glucose
pdb|1I2C|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-Glucose
Length = 404
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 81/215 (37%), Gaps = 31/215 (14%)
Query: 72 GHIVLVTGAAGFVG----THVSAA----------LRRRGDGVVGLDNFNDYYDTSLKRGR 117
G V+V G G+ G H+S +RR D +GL++ + R
Sbjct: 11 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 70
Query: 118 ASLLERAGVFVVEGDINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYV---NSN 174
L + + GDI D L + F + V+H Q Y+M + V ++N
Sbjct: 71 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNN 130
Query: 175 IAGFVNLLEACKTANPQPAIIWASSSSVYGL------NKKIPFSEKDRTD------QPSS 222
+ G +N+L A K + ++ + YG I + RTD Q SS
Sbjct: 131 VIGTLNVLFAIKEFGEECHLVKLGAMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASS 190
Query: 223 LYAATK-KAGEEIAHTYNHIYGLSITGLRFFTVYG 256
Y +K IA T +G+ T L VYG
Sbjct: 191 FYHLSKVHDSHNIAFTCK-AWGIRATDLNQGVVYG 224
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 80/212 (37%), Gaps = 31/212 (14%)
Query: 75 VLVTGAAGFVG----THVSAA----------LRRRGDGVVGLDNFNDYYDTSLKRGRASL 120
V+V G G+ G H+S +RR D +GL++ + R
Sbjct: 4 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA 63
Query: 121 LERAGVFVVEGDINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYV---NSNIAG 177
L + + GDI D L + F + V+H Q Y+M + V ++N+ G
Sbjct: 64 LTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIG 123
Query: 178 FVNLLEACKTANPQPAIIWASSSSVYGL------NKKIPFSEKDRTD------QPSSLYA 225
+N+L A K + ++ + YG I + RTD Q SS Y
Sbjct: 124 TLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYH 183
Query: 226 ATK-KAGEEIAHTYNHIYGLSITGLRFFTVYG 256
+K IA T +G+ T L VYG
Sbjct: 184 LSKVHDSHNIAFTCK-AWGIRATDLNQGVVYG 214
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 74/190 (38%), Gaps = 30/190 (15%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVV--EGD 132
+LVTG +G VG + + G G+ G D VFV + D
Sbjct: 9 ILVTGGSGLVGKAIQKVVAD-GAGLPGED---------------------WVFVSSKDAD 46
Query: 133 INDSLLLEKLFNLVKFSHVMHLAAQAGVRY-AMKNPMSYVNSNIAGFVNLLEACKTANPQ 191
+ D+ LF V+ +HV+HLAA G + +K + + N+ N+L + +
Sbjct: 47 LTDTAQTRALFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGAR 106
Query: 192 PAIIWASSSSVYGLNKKIPFSEKDRTDQPSSL----YAATKKAGEEIAHTYNHIYGLSIT 247
++ S+ ++ P E + P Y+ K+ + Y YG + T
Sbjct: 107 -KVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFT 165
Query: 248 GLRFFTVYGP 257
+ V+GP
Sbjct: 166 AVIPTNVFGP 175
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 74/190 (38%), Gaps = 30/190 (15%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVV--EGD 132
+LVTG +G VG + + G G+ G D VFV + D
Sbjct: 10 ILVTGGSGLVGKAIQKVVAD-GAGLPGED---------------------WVFVSSKDAD 47
Query: 133 INDSLLLEKLFNLVKFSHVMHLAAQAGVRY-AMKNPMSYVNSNIAGFVNLLEACKTANPQ 191
+ D+ LF V+ +HV+HLAA G + +K + + N+ N+L + +
Sbjct: 48 LTDTAQTRALFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGAR 107
Query: 192 PAIIWASSSSVYGLNKKIPFSEKDRTDQPSSL----YAATKKAGEEIAHTYNHIYGLSIT 247
++ S+ ++ P E + P Y+ K+ + Y YG + T
Sbjct: 108 -KVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFT 166
Query: 248 GLRFFTVYGP 257
+ V+GP
Sbjct: 167 AVIPTNVFGP 176
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 52/137 (37%), Gaps = 7/137 (5%)
Query: 72 GHIVLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEG 131
G +VLVTGA GFV +HV L G V G KR A R VVE
Sbjct: 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVED 70
Query: 132 DINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQ 191
+ E + +H+ + V ++ K V I G +N L A A P
Sbjct: 71 XLKQGAYDEVIKGAAGVAHIASV-----VSFSNKYD-EVVTPAIGGTLNALRAA-AATPS 123
Query: 192 PAIIWASSSSVYGLNKK 208
+SS+V L K
Sbjct: 124 VKRFVLTSSTVSALIPK 140
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 52/137 (37%), Gaps = 7/137 (5%)
Query: 72 GHIVLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEG 131
G +VLVTGA GFV +HV L G V G KR A R VVE
Sbjct: 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVED 70
Query: 132 DINDSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQ 191
+ E + +H+ + V ++ K V I G +N L A A P
Sbjct: 71 MLKQGAYDEVIKGAAGVAHIASV-----VSFSNKYD-EVVTPAIGGTLNALRAA-AATPS 123
Query: 192 PAIIWASSSSVYGLNKK 208
+SS+V L K
Sbjct: 124 VKRFVLTSSTVSALIPK 140
>pdb|1YBY|A Chain A, Conserved Hypothetical Protein Cth-95 From Clostridium
Thermocellum
pdb|1YBY|B Chain B, Conserved Hypothetical Protein Cth-95 From Clostridium
Thermocellum
Length = 215
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 118 ASLLERAGVFVVEGDINDSLLLE---KLFNLVKFSHVMHLAAQAGVRYAMKN 166
SL ++AG+ + GD + + E ++F +++F HV A VR +KN
Sbjct: 22 TSLYKKAGLXISAGDFKNGVTFELDGQIFQVIEFQHVKPGKGAAFVRTKLKN 73
>pdb|1VI0|A Chain A, Crystal Structure Of A Transcriptional Regulator
pdb|1VI0|B Chain B, Crystal Structure Of A Transcriptional Regulator
Length = 206
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 18/148 (12%)
Query: 61 LRSSRPR-SRAGGHIVLVTGAAGFVGTHVSAALRRRG--DGVVGL--DNFNDYYDTSLKR 115
L+ RP+ + V V G+ + VS ++ G DG + L N D + K
Sbjct: 3 LKQKRPKYXQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKE 62
Query: 116 GRASLLERAGVFVVEGDIND--------SLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNP 167
+ER E DI + +L++ K F+L+ H + + Q +R +
Sbjct: 63 KXGQFIERX-----EEDIKEKATAKEKLALVISKHFSLLAGDHNLAIVTQLELRQSNLEL 117
Query: 168 MSYVNSNIAGFVNLLEACKTANPQPAII 195
+N + G++N+L+ T Q I
Sbjct: 118 RQKINEILKGYLNILDGILTEGIQSGEI 145
>pdb|2YDY|A Chain A, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit In Orthorhombic Crystal Form
Length = 315
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 71/183 (38%), Gaps = 27/183 (14%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDIN 134
VLVTGA G +G V ++ VG +R R E+ +
Sbjct: 5 VLVTGATGLLGRAVHKEFQQNNWHAVG---------CGFRRARPK-FEQVNLL------- 47
Query: 135 DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQPAI 194
DS + + + + ++H AA+ P + N+ NL A + A +
Sbjct: 48 DSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNL--AKEAAAVGAFL 105
Query: 195 IWASSSSVY-GLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLSITGLRFFT 253
I+ SS V+ G N P+ E+D P +LY TK GE+ N L LR
Sbjct: 106 IYISSDYVFDGTNP--PYREED-IPAPLNLYGKTKLDGEKAVLENN----LGAAVLRIPI 158
Query: 254 VYG 256
+YG
Sbjct: 159 LYG 161
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFND----YYDTSLKRGRASLLERAGVFVVE 130
V V GA G++G ++ A +R+G VV +D + YYD L A +E G+ +
Sbjct: 197 VAVVGA-GYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAF 255
Query: 131 GD 132
G+
Sbjct: 256 GE 257
>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3T|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3U|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3U|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3V|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|1V3V|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|2DM6|A Chain A, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
pdb|2DM6|B Chain B, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
Length = 333
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 71 GGHIVLVTGAAGFVGTHVSAALRRRGDGVVG 101
GG VLV+ AAG VG+ V + +G VVG
Sbjct: 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVG 175
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFND----YYDTSLKRGRASLLERAGVFVVE 130
V V GA G++G ++ A +R+G VV +D + YYD L A +E G+ +
Sbjct: 197 VAVVGA-GYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAF 255
Query: 131 GD 132
G+
Sbjct: 256 GE 257
>pdb|2YDX|A Chain A, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|B Chain B, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|C Chain C, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|D Chain D, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|E Chain E, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
Length = 315
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 71/183 (38%), Gaps = 27/183 (14%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDIN 134
VLVTGA G +G V ++ VG +R R E+ +
Sbjct: 5 VLVTGATGLLGRAVHKEFQQNNWHAVG---------CGFRRARPK-FEQVNLL------- 47
Query: 135 DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNSNIAGFVNLLEACKTANPQPAI 194
DS + + + + ++H AA+ P + N+ NL A + A +
Sbjct: 48 DSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNL--AKEAAAVGAFL 105
Query: 195 IWASSSSVY-GLNKKIPFSEKDRTDQPSSLYAATKKAGEEIAHTYNHIYGLSITGLRFFT 253
I+ SS V+ G N P+ E+D P +LY TK GE+ N L LR
Sbjct: 106 IYISSDYVFDGTNP--PYREED-IPAPLNLYGKTKLDGEKAVLENN----LGAAVLRIPI 158
Query: 254 VYG 256
+YG
Sbjct: 159 LYG 161
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 85/240 (35%), Gaps = 22/240 (9%)
Query: 75 VLVTGAAGFVGTHVSAALRRRGDGVVGLDNFNDYYDTSLKRGRASLLERAGVFVVEGDIN 134
V VTG GF+G+ + +L G V N D KR + L G N
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSV----NTTIRADPERKRDVSFLTNLPGASEKLHFFN 59
Query: 135 DSLLLEKLFNLVKFSHVMHLAAQAGVRYAMKNPMSYVNS-NIAGFVNLLEACKTANPQPA 193
L F V + + +A+ P V + G + +L+AC +
Sbjct: 60 ADLSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKR 119
Query: 194 IIWASSSSVYGLN--KKIPFSEKDRTD-------QPSSL-YAATKKAGEEIAHTYNHIYG 243
I+ SS S N K E D +D +P YA +K E+ + G
Sbjct: 120 FIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNG 179
Query: 244 LSITGLRFFTVYGPWGRPDMVYFFFTKNILKRKPVMIFEGPNHATVAR-DFTYIDDIVKG 302
+ + L + G + P + + +++ V++ V R ++DD+ +
Sbjct: 180 IDVVTLILPFIVGRFVCPKL------PDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARA 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,863,086
Number of Sequences: 62578
Number of extensions: 404935
Number of successful extensions: 1199
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 977
Number of HSP's gapped (non-prelim): 147
length of query: 413
length of database: 14,973,337
effective HSP length: 101
effective length of query: 312
effective length of database: 8,652,959
effective search space: 2699723208
effective search space used: 2699723208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)