Query 015117
Match_columns 413
No_of_seqs 230 out of 1171
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:16:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015117.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015117hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2234 Predicted UDP-galactos 100.0 6.9E-59 1.5E-63 451.7 34.7 318 24-362 2-327 (345)
2 PF04142 Nuc_sug_transp: Nucle 100.0 2.4E-44 5.1E-49 343.8 24.8 226 121-348 11-244 (244)
3 TIGR00803 nst UDP-galactose tr 99.9 2.2E-26 4.7E-31 216.9 15.7 219 130-355 2-222 (222)
4 PF08449 UAA: UAA transporter 99.9 2.1E-23 4.6E-28 205.7 28.5 291 41-362 5-302 (303)
5 KOG1581 UDP-galactose transpor 99.9 2.3E-22 5E-27 191.8 25.4 297 31-357 6-313 (327)
6 PF06027 DUF914: Eukaryotic pr 99.9 1.5E-21 3.1E-26 193.7 30.7 233 125-365 77-313 (334)
7 PLN00411 nodulin MtN21 family 99.9 5.3E-20 1.2E-24 185.3 33.8 285 51-367 25-336 (358)
8 KOG3912 Predicted integral mem 99.8 3.9E-19 8.5E-24 167.7 23.2 288 56-359 20-336 (372)
9 PTZ00343 triose or hexose phos 99.8 1.2E-17 2.7E-22 168.0 32.3 298 22-358 36-349 (350)
10 PRK15430 putative chlorampheni 99.8 1.4E-17 3E-22 163.7 31.7 272 38-354 7-282 (296)
11 TIGR00817 tpt Tpt phosphate/ph 99.8 6.8E-18 1.5E-22 166.1 28.0 216 129-357 67-293 (302)
12 PRK11272 putative DMT superfam 99.8 6.6E-17 1.4E-21 158.6 31.9 276 34-357 3-285 (292)
13 PRK11453 O-acetylserine/cystei 99.8 8.5E-17 1.8E-21 158.3 32.5 274 43-359 8-289 (299)
14 KOG1580 UDP-galactose transpor 99.8 9.3E-19 2E-23 161.6 15.1 257 67-355 50-311 (337)
15 TIGR00950 2A78 Carboxylate/Ami 99.8 2.7E-16 5.8E-21 150.6 29.2 205 130-352 49-259 (260)
16 PRK11689 aromatic amino acid e 99.7 2.7E-15 5.9E-20 147.4 29.9 271 42-357 7-287 (295)
17 PRK10532 threonine and homoser 99.7 5.8E-15 1.3E-19 144.9 31.5 264 41-358 14-282 (293)
18 TIGR03340 phn_DUF6 phosphonate 99.7 3.5E-15 7.5E-20 145.5 25.9 210 130-354 66-280 (281)
19 COG0697 RhaT Permeases of the 99.6 7E-13 1.5E-17 127.6 32.5 210 129-358 72-288 (292)
20 TIGR00688 rarD rarD protein. T 99.6 6.1E-13 1.3E-17 127.8 25.6 249 40-332 3-255 (256)
21 KOG1583 UDP-N-acetylglucosamin 99.5 1.3E-14 2.8E-19 137.2 6.0 231 129-364 66-321 (330)
22 KOG4510 Permease of the drug/m 99.4 3.6E-13 7.9E-18 126.9 7.2 205 141-356 111-324 (346)
23 KOG1582 UDP-galactose transpor 99.4 6.5E-12 1.4E-16 118.7 15.5 221 129-359 108-334 (367)
24 KOG1441 Glucose-6-phosphate/ph 99.3 8.1E-12 1.8E-16 123.1 10.9 224 129-364 85-314 (316)
25 TIGR00776 RhaT RhaT L-rhamnose 99.3 3E-09 6.5E-14 104.6 26.0 209 130-355 62-286 (290)
26 KOG1443 Predicted integral mem 99.3 5E-10 1.1E-14 107.8 19.6 262 64-357 39-315 (349)
27 COG2962 RarD Predicted permeas 99.2 1.3E-08 2.8E-13 97.9 27.9 272 40-357 8-283 (293)
28 KOG2765 Predicted membrane pro 99.2 7.9E-10 1.7E-14 109.0 18.9 226 130-363 162-396 (416)
29 KOG1444 Nucleotide-sugar trans 99.2 9.4E-09 2E-13 100.0 22.3 226 125-364 75-307 (314)
30 KOG1442 GDP-fucose transporter 99.1 4E-11 8.8E-16 113.6 4.3 229 122-362 100-332 (347)
31 KOG2766 Predicted membrane pro 98.9 4.7E-10 1E-14 105.5 1.5 213 130-355 81-297 (336)
32 PF03151 TPT: Triose-phosphate 98.9 8.9E-08 1.9E-12 84.3 15.2 138 217-357 1-153 (153)
33 COG5070 VRG4 Nucleotide-sugar 98.6 8.3E-07 1.8E-11 82.3 13.0 230 128-364 69-303 (309)
34 PF13536 EmrE: Multidrug resis 98.5 2.2E-06 4.8E-11 72.2 13.7 68 134-202 41-109 (113)
35 PF00892 EamA: EamA-like trans 98.5 1E-06 2.3E-11 73.9 10.6 108 69-198 17-125 (126)
36 COG2510 Predicted membrane pro 98.5 1.2E-06 2.6E-11 74.7 10.1 129 46-198 10-138 (140)
37 COG5006 rhtA Threonine/homoser 98.4 7.1E-05 1.5E-09 71.0 21.8 203 131-357 75-282 (292)
38 PF03151 TPT: Triose-phosphate 98.4 9.4E-06 2E-10 71.3 13.6 146 42-197 3-151 (153)
39 KOG4314 Predicted carbohydrate 98.3 4.1E-06 8.9E-11 76.5 10.8 212 134-359 60-278 (290)
40 PF06800 Sugar_transport: Suga 98.3 0.00011 2.3E-09 71.3 19.5 213 127-353 45-267 (269)
41 PF05653 Mg_trans_NIPA: Magnes 98.3 4.7E-05 1E-09 75.3 17.6 71 128-200 53-123 (300)
42 PF00892 EamA: EamA-like trans 98.2 2.6E-05 5.6E-10 65.3 11.7 118 227-355 2-124 (126)
43 PRK15051 4-amino-4-deoxy-L-ara 98.1 3.4E-05 7.4E-10 65.1 10.7 68 131-198 41-108 (111)
44 COG2510 Predicted membrane pro 98.0 6E-05 1.3E-09 64.4 10.9 127 218-355 5-137 (140)
45 TIGR00950 2A78 Carboxylate/Ami 98.0 0.00021 4.6E-09 68.2 14.9 66 130-195 194-260 (260)
46 TIGR00817 tpt Tpt phosphate/ph 97.9 0.00012 2.6E-09 72.1 12.7 148 39-200 145-294 (302)
47 PTZ00343 triose or hexose phos 97.9 0.00021 4.6E-09 72.1 14.6 69 130-198 279-347 (350)
48 PLN00411 nodulin MtN21 family 97.7 0.00098 2.1E-08 67.6 15.6 63 139-201 268-330 (358)
49 PRK02971 4-amino-4-deoxy-L-ara 97.7 0.0023 5.1E-08 55.4 15.5 119 217-358 3-123 (129)
50 PRK10532 threonine and homoser 97.7 0.0022 4.7E-08 63.0 16.4 64 137-200 219-282 (293)
51 PRK11689 aromatic amino acid e 97.6 0.0026 5.5E-08 62.6 15.9 66 135-200 223-288 (295)
52 COG2076 EmrE Membrane transpor 97.6 0.00099 2.2E-08 55.5 10.6 72 128-199 31-103 (106)
53 TIGR03340 phn_DUF6 phosphonate 97.6 0.0029 6.2E-08 61.7 15.7 129 218-357 3-135 (281)
54 PRK10452 multidrug efflux syst 97.5 0.001 2.2E-08 57.0 10.5 73 129-201 32-105 (120)
55 PRK11431 multidrug efflux syst 97.5 0.0014 3E-08 54.8 10.9 71 129-199 31-102 (105)
56 PRK09541 emrE multidrug efflux 97.5 0.0018 4E-08 54.5 11.4 72 129-200 32-104 (110)
57 PRK10650 multidrug efflux syst 97.4 0.0018 3.9E-08 54.4 10.7 70 129-198 37-107 (109)
58 PF08449 UAA: UAA transporter 97.4 0.0036 7.9E-08 61.8 14.8 142 40-200 155-298 (303)
59 PRK11272 putative DMT superfam 97.4 0.0049 1.1E-07 60.4 15.3 64 137-200 223-286 (292)
60 PRK02971 4-amino-4-deoxy-L-ara 97.4 0.0012 2.6E-08 57.2 9.6 67 134-200 55-123 (129)
61 TIGR00776 RhaT RhaT L-rhamnose 97.4 0.0031 6.8E-08 62.0 13.5 72 128-199 212-288 (290)
62 PRK11453 O-acetylserine/cystei 97.4 0.0069 1.5E-07 59.6 15.9 63 138-200 226-288 (299)
63 TIGR00688 rarD rarD protein. T 97.2 0.011 2.4E-07 56.6 15.3 133 217-355 3-140 (256)
64 PRK15430 putative chlorampheni 97.2 0.013 2.7E-07 57.7 15.4 133 216-356 8-144 (296)
65 PRK15051 4-amino-4-deoxy-L-ara 97.1 0.0051 1.1E-07 51.9 9.6 61 296-356 48-108 (111)
66 PRK10452 multidrug efflux syst 97.1 0.0081 1.8E-07 51.4 10.8 62 296-357 41-103 (120)
67 PF13536 EmrE: Multidrug resis 97.0 0.011 2.4E-07 49.6 11.2 60 297-357 47-106 (113)
68 PRK09541 emrE multidrug efflux 96.9 0.013 2.8E-07 49.4 10.7 60 298-357 43-103 (110)
69 PF06800 Sugar_transport: Suga 96.8 0.023 5E-07 55.2 12.6 116 42-188 141-256 (269)
70 PF10639 UPF0546: Uncharacteri 96.8 0.0033 7.1E-08 53.1 5.8 71 127-197 41-112 (113)
71 KOG2922 Uncharacterized conser 96.6 0.012 2.7E-07 57.9 9.7 67 135-201 72-138 (335)
72 PF00893 Multi_Drug_Res: Small 96.5 0.011 2.5E-07 48.1 7.2 61 130-190 32-93 (93)
73 PRK13499 rhamnose-proton sympo 96.5 1.2 2.6E-05 45.0 23.9 104 129-232 75-190 (345)
74 KOG1441 Glucose-6-phosphate/ph 96.4 0.0059 1.3E-07 60.7 6.1 70 129-198 237-306 (316)
75 COG5006 rhtA Threonine/homoser 96.3 0.013 2.8E-07 56.0 7.3 58 139-196 222-279 (292)
76 PRK10650 multidrug efflux syst 96.2 0.23 4.9E-06 41.8 13.9 60 296-355 46-106 (109)
77 PF05653 Mg_trans_NIPA: Magnes 96.1 0.042 9.1E-07 54.4 10.5 115 215-355 6-120 (300)
78 COG2076 EmrE Membrane transpor 96.1 0.066 1.4E-06 44.7 9.7 59 299-357 44-103 (106)
79 PRK11431 multidrug efflux syst 96.0 0.081 1.8E-06 44.2 10.0 61 296-356 40-101 (105)
80 PF06027 DUF914: Eukaryotic pr 95.8 0.37 8E-06 48.5 15.7 62 296-357 90-151 (334)
81 COG0697 RhaT Permeases of the 95.7 0.081 1.8E-06 50.5 10.4 71 130-200 217-288 (292)
82 PF07857 DUF1632: CEO family ( 95.5 0.18 4E-06 48.7 11.5 68 296-363 66-140 (254)
83 PF04142 Nuc_sug_transp: Nucle 95.3 0.14 2.9E-06 49.3 10.1 70 296-365 28-97 (244)
84 TIGR00803 nst UDP-galactose tr 95.0 0.032 7E-07 52.3 4.6 68 129-196 154-221 (222)
85 PF04657 DUF606: Protein of un 94.8 1.9 4.2E-05 37.6 15.1 130 219-354 4-138 (138)
86 PF10639 UPF0546: Uncharacteri 94.5 0.1 2.3E-06 44.1 6.1 66 289-354 45-111 (113)
87 PF00893 Multi_Drug_Res: Small 94.5 0.17 3.7E-06 41.1 7.2 49 300-348 44-93 (93)
88 PRK13499 rhamnose-proton sympo 94.0 0.79 1.7E-05 46.3 12.3 136 215-357 6-153 (345)
89 KOG1580 UDP-galactose transpor 93.9 0.14 3E-06 48.6 6.0 71 127-197 241-311 (337)
90 KOG1581 UDP-galactose transpor 93.6 0.79 1.7E-05 45.1 11.0 148 25-197 163-311 (327)
91 COG2962 RarD Predicted permeas 92.8 3.4 7.3E-05 40.6 13.8 71 129-199 213-283 (293)
92 COG4975 GlcU Putative glucose 91.5 0.038 8.3E-07 52.6 -1.1 130 42-202 5-139 (288)
93 COG3238 Uncharacterized protei 90.6 12 0.00026 33.3 15.0 133 217-357 6-146 (150)
94 KOG4510 Permease of the drug/m 89.8 0.33 7.2E-06 47.0 3.6 73 302-377 114-192 (346)
95 KOG2922 Uncharacterized conser 88.2 0.2 4.4E-06 49.5 1.0 69 286-354 65-133 (335)
96 COG5070 VRG4 Nucleotide-sugar 81.1 6.4 0.00014 37.4 7.3 69 129-197 226-294 (309)
97 COG4975 GlcU Putative glucose 81.0 0.84 1.8E-05 43.8 1.5 65 125-189 207-271 (288)
98 PF06379 RhaT: L-rhamnose-prot 77.6 38 0.00082 34.2 12.0 135 215-358 6-154 (344)
99 KOG4831 Unnamed protein [Funct 77.2 3.5 7.7E-05 34.3 3.9 70 127-196 52-122 (125)
100 KOG1444 Nucleotide-sugar trans 76.9 61 0.0013 32.3 13.1 134 217-357 13-149 (314)
101 KOG3912 Predicted integral mem 75.2 45 0.00098 32.9 11.3 37 320-356 121-157 (372)
102 PF04342 DUF486: Protein of un 72.7 7.5 0.00016 32.4 4.7 43 313-355 64-106 (108)
103 PF04657 DUF606: Protein of un 69.4 76 0.0017 27.6 11.6 64 133-196 70-138 (138)
104 KOG1582 UDP-galactose transpor 66.1 77 0.0017 31.2 10.7 51 151-201 284-334 (367)
105 KOG4831 Unnamed protein [Funct 65.7 9.2 0.0002 31.9 3.8 68 288-355 55-123 (125)
106 PF06609 TRI12: Fungal trichot 64.1 2.3E+02 0.0049 31.1 16.6 21 180-200 237-257 (599)
107 PF04342 DUF486: Protein of un 59.8 21 0.00046 29.8 5.0 50 147-196 55-105 (108)
108 KOG1583 UDP-N-acetylglucosamin 59.0 35 0.00076 33.5 7.1 154 24-198 149-313 (330)
109 KOG1443 Predicted integral mem 58.1 1E+02 0.0022 30.8 10.2 74 124-197 240-313 (349)
110 KOG2765 Predicted membrane pro 56.6 17 0.00036 37.1 4.6 52 314-365 188-239 (416)
111 KOG2234 Predicted UDP-galactos 52.4 85 0.0018 31.8 8.8 61 296-356 103-163 (345)
112 PF03348 Serinc: Serine incorp 51.7 1.7E+02 0.0037 30.6 11.3 20 337-357 283-302 (429)
113 TIGR02865 spore_II_E stage II 51.2 4.1E+02 0.0088 30.0 16.5 44 154-197 11-54 (764)
114 COG3169 Uncharacterized protei 48.2 1.6E+02 0.0034 24.4 11.9 44 313-356 71-114 (116)
115 PF05297 Herpes_LMP1: Herpesvi 46.4 6.6 0.00014 38.4 0.0 97 144-249 40-138 (381)
116 PF03119 DNA_ligase_ZBD: NAD-d 45.5 11 0.00023 23.7 0.8 13 3-15 1-13 (28)
117 PF05077 DUF678: Protein of un 39.0 10 0.00023 29.3 0.1 23 3-25 27-49 (74)
118 COG0004 AmtB Ammonia permease 37.3 3.3E+02 0.0072 28.3 10.6 76 166-242 172-254 (409)
119 PF05977 MFS_3: Transmembrane 35.0 5.9E+02 0.013 27.2 24.9 22 73-94 169-190 (524)
120 PF05961 Chordopox_A13L: Chord 34.5 35 0.00076 26.0 2.3 40 339-378 4-44 (68)
121 COG3169 Uncharacterized protei 31.9 3E+02 0.0065 22.8 10.8 32 166-197 82-113 (116)
122 PF13000 Acatn: Acetyl-coenzym 29.8 3.6E+02 0.0079 29.0 9.6 27 230-261 59-85 (544)
123 smart00734 ZnF_Rad18 Rad18-lik 29.4 13 0.00028 22.8 -0.6 11 1-11 1-11 (26)
124 PTZ00074 60S ribosomal protein 29.3 42 0.00091 29.3 2.2 39 3-41 43-92 (135)
125 PF09889 DUF2116: Uncharacteri 28.2 31 0.00067 25.7 1.1 43 3-45 5-49 (59)
126 PF01199 Ribosomal_L34e: Ribos 26.7 35 0.00075 27.9 1.2 36 2-37 42-88 (94)
127 TIGR03644 marine_trans_1 proba 26.4 7.3E+02 0.016 25.7 11.1 24 219-242 244-267 (404)
128 PLN00028 nitrate transmembrane 26.0 7.5E+02 0.016 25.5 13.3 19 391-409 455-473 (476)
129 PRK04059 rpl34e 50S ribosomal 25.4 36 0.00077 27.5 1.0 33 3-35 36-79 (88)
130 COG2855 Predicted membrane pro 23.8 7.1E+02 0.015 25.2 10.0 71 217-288 124-195 (334)
131 TIGR01206 lysW lysine biosynth 23.2 39 0.00084 24.7 0.8 14 2-15 3-16 (54)
132 KOG0569 Permease of the major 23.2 4E+02 0.0086 28.4 8.6 21 332-352 176-196 (485)
133 PRK14778 lipoprotein signal pe 22.5 6.1E+02 0.013 23.3 10.7 38 317-354 80-136 (186)
134 KOG1442 GDP-fucose transporter 22.3 66 0.0014 31.7 2.4 105 76-196 220-324 (347)
135 PF10710 DUF2512: Protein of u 21.7 5.2E+02 0.011 22.5 7.7 59 305-363 52-113 (136)
136 PHA02893 hypothetical protein; 20.4 32 0.0007 27.3 -0.1 17 3-19 36-52 (88)
137 PHA03049 IMV membrane protein; 20.1 89 0.0019 23.8 2.2 26 339-364 4-29 (68)
No 1
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.9e-59 Score=451.74 Aligned_cols=318 Identities=31% Similarity=0.467 Sum_probs=261.8
Q ss_pred ccccCCcccc---hhhHHHHHHHHHHHHHHHhhhhhhheecccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhc-Ccc
Q 015117 24 AYDRHRHQVS---SKTRFLNVALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARH-KKV 99 (413)
Q Consensus 24 ~~~~~~~~~~---~k~~~l~vl~v~~~~~~~~~~~il~~~s~~~g~~~y~~~tvV~l~E~~Kl~is~~~l~~~~~~-~~~ 99 (413)
++|++..... .|+..+.++-++.. .++.++++++.+.+++|.|+++||++|++|+++|..+++++.+. ..+
T Consensus 2 ~~~~~~~~~~~~~~k~~~l~~~t~~~~-----~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~ 76 (345)
T KOG2234|consen 2 AVKSMPIISSLSQMKYLSLIVLTAQNT-----ALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKK 76 (345)
T ss_pred CcccccccccHHHHHHHHHHHHHHHHh-----hHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhh
Confidence 4454433333 44444444433333 35566788876657889999999999999999999999988644 111
Q ss_pred ccccccccchhcccchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCC
Q 015117 100 GEKSLLSFSTIAQMPVISFILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRF 179 (413)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kl 179 (413)
..+.+. + .+ ...+|++++.++||++|++|||++|++++|+|++|||+++|+|+++||+|++++|+||+
T Consensus 77 ~~~~l~-~-~i----------~~~~~~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkL 144 (345)
T KOG2234|consen 77 SLKSLS-K-EI----------LAAPRETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKL 144 (345)
T ss_pred hhhhcC-H-HH----------HhChHHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhh
Confidence 112211 1 11 45677999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCCCCCC--CCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHH
Q 015117 180 SIIQWEALALLLIGISVNQLRSLPEGTSA--LGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGY 257 (413)
Q Consensus 180 s~~qw~al~Ll~~GV~lv~~~~~~~~~~~--~~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~ 257 (413)
+++||.|++++++|++++|.+..++.+.. ........|..+++.+|++||+||||+||++|+. +.+.|+||+|||++
T Consensus 145 s~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s-~~s~wi~NiqL~~~ 223 (345)
T KOG2234|consen 145 SRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGS-NVSLWIRNIQLYFF 223 (345)
T ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 99999999999999999995432211111 1111245699999999999999999999999987 78999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCC--ccccccCChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCC
Q 015117 258 GAIFNFLGIVITAMFKGPS--SFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGH 335 (413)
Q Consensus 258 g~l~~l~~ll~~~~~~~~~--~~~~~~g~~~~~~~~il~~aiggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~ 335 (413)
|+++++..++.. +++. ..|+|+||++.+|++++++|+||+++++++||+|||+|+|++++++++++++|+++||+
T Consensus 224 g~~f~~l~~~~~---d~~~i~~~gff~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~ 300 (345)
T KOG2234|consen 224 GILFNLLTILLQ---DGEAINEYGFFYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDF 300 (345)
T ss_pred HHHHHHHHHhhc---cccccccCCccccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 999999887653 3332 46899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhcccCCcC
Q 015117 336 TLTMNFILGISIVFISMHQFFSPLSKV 362 (413)
Q Consensus 336 ~lt~~~~lG~~LVi~gv~ly~~~~~~~ 362 (413)
+||..+++|+.+|+.++++|+.++.+.
T Consensus 301 ~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 301 QLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred CchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 999999999999999999999655554
No 2
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=100.00 E-value=2.4e-44 Score=343.79 Aligned_cols=226 Identities=33% Similarity=0.536 Sum_probs=199.8
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 015117 121 LQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 200 (413)
Q Consensus 121 ~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~ 200 (413)
.+.+|+.+++++||++|++||++.|++++++||++||+++|+|+++||++++++||||++++||+|++++++|+++++.+
T Consensus 11 ~~~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~ 90 (244)
T PF04142_consen 11 WKSPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLS 90 (244)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecC
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCC--CCCC------CCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015117 201 SLPEGT--SALG------LPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMF 272 (413)
Q Consensus 201 ~~~~~~--~~~~------~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~ 272 (413)
+....+ +..+ ......|++++++++++||+++||+||++|++ +.|+|.||+|+|++|++++++...... .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~-~~s~~~~N~qL~~~gi~~~~~~~~~~~-~ 168 (244)
T PF04142_consen 91 SSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRS-NVSLWIQNMQLYLFGILFNLLALLLSD-G 168 (244)
T ss_pred CccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHhccc-c
Confidence 643211 1111 11235699999999999999999999999997 689999999999999999987754311 1
Q ss_pred cCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 015117 273 KGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIV 348 (413)
Q Consensus 273 ~~~~~~~~~~g~~~~~~~~il~~aiggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LV 348 (413)
+.....|+|+||++++|.+++.+|+||+++++++||+|||+|+|++++++++++++|+++||.++|..+++|..+|
T Consensus 169 ~~~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 169 SAISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred cccccCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 1112458999999999999999999999999999999999999999999999999999999999999999998875
No 3
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.94 E-value=2.2e-26 Score=216.93 Aligned_cols=219 Identities=25% Similarity=0.335 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 015117 130 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSAL 209 (413)
Q Consensus 130 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~~~~~~~~~ 209 (413)
+++|+..|+.+|++.++++.+.++..++.. |.|++.++++....++++++..||.++.++..|+..++.++..+.. .
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~--~ 78 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKT--L 78 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccc--c
Confidence 578999999999999999999999999999 9999999999999999999999999999999999988765422111 1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CccccccCChhH
Q 015117 210 GLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGP--SSFDILQGHSKA 287 (413)
Q Consensus 210 ~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~--~~~~~~~g~~~~ 287 (413)
.......|..+.+.++++++++++|+|+.+|++ +..+|.+|+++++++.+.+....... .++ ...+++++++..
T Consensus 79 ~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~-~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 154 (222)
T TIGR00803 79 MFGNPVVGLSAVLSALLSSGFAGVYFEKILKDG-DTMFWSRNLQLPLFGLFSTFSVLLWS---DGTLISNFGFFIGYPTA 154 (222)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHcccCC-CCchHHHHHHHHHHHHHHHHHHHhhc---ccchhhccCcccCCchH
Confidence 111234577788889999999999999998876 67899999999999988665443321 111 134678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015117 288 TMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 355 (413)
Q Consensus 288 ~~~~il~~aiggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly 355 (413)
+|..+++++++|+++++++||+|+++|+++++++++++.++|+++|||+++..+++|+.+|+.|+++|
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999887
No 4
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.93 E-value=2.1e-23 Score=205.68 Aligned_cols=291 Identities=20% Similarity=0.279 Sum_probs=215.1
Q ss_pred HHHHHHHHHHHhh-hhhhheecccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccchhcccchHHHH
Q 015117 41 VALVVGDCILVGL-QPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQMPVISFI 119 (413)
Q Consensus 41 vl~v~~~~~~~~~-~~il~~~s~~~g~~~y~~~tvV~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (413)
+.++...++.|+. |..+++. ..+. -.+..+.+++.+.-.+++.......+.++ +..
T Consensus 5 ~~~i~~~~~~~g~~qE~i~~~--~~~~--~~~~~lt~~q~~~~~~~~~~~~~~~~~~~-----~~~-------------- 61 (303)
T PF08449_consen 5 VAGIFGGCCSYGILQEKIMTT--PYGS--PFPLFLTFVQFAFNALFSFILLSLFKFPK-----SRK-------------- 61 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHcC--CCCC--cccHHHHHHHHHHHHHHHHHHHHhccccC-----CCc--------------
Confidence 4444555555544 3333331 1111 13578888888888888877665444111 000
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Q 015117 120 LLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQL 199 (413)
Q Consensus 120 ~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~ 199 (413)
+....++++++++.+.+.+.+.+++|+|.+++++++++|++++++++++++|||++++||+++++.++|++++..
T Consensus 62 -----~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~ 136 (303)
T PF08449_consen 62 -----IPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTL 136 (303)
T ss_pred -----ChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeee
Confidence 012378999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCCCCCCCC-CcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC--C
Q 015117 200 RSLPEGTSALGL-PVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGP--S 276 (413)
Q Consensus 200 ~~~~~~~~~~~~-~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~--~ 276 (413)
.+..+.+..... .....|+.+++++.+++|+.++|+||+++++ +.+.+....+.++++.++.++..+.-. .++ +
T Consensus 137 ~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~-~~~~~~~mfy~n~~~~~~~~~~~~~l~--~~~~~~ 213 (303)
T PF08449_consen 137 SDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKY-GKSPWELMFYTNLFSLPFLLILLFLLP--TGEFRS 213 (303)
T ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHHH--hhHhhH
Confidence 654322111111 1112389999999999999999999999987 567787788888888877766544300 111 1
Q ss_pred ccccccCChhHHH---HHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 015117 277 SFDILQGHSKATM---LLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMH 353 (413)
Q Consensus 277 ~~~~~~g~~~~~~---~~il~~aiggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ 353 (413)
...+...++...+ ...+.++++...+...+|..++...+..++++.+++.++|+++||+++++.+++|+++|+.|+.
T Consensus 214 ~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~ 293 (303)
T PF08449_consen 214 AIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIF 293 (303)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHH
Confidence 1122333332222 2234567777888888999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCcC
Q 015117 354 QFFSPLSKV 362 (413)
Q Consensus 354 ly~~~~~~~ 362 (413)
+|+.++.|+
T Consensus 294 ~~~~~~~k~ 302 (303)
T PF08449_consen 294 LYSYAKKKK 302 (303)
T ss_pred HHHHhhccC
Confidence 998866654
No 5
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.91 E-value=2.3e-22 Score=191.83 Aligned_cols=297 Identities=15% Similarity=0.179 Sum_probs=235.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHhhhhhhh----eecc-cCC-cccchhHHHHHHHHHHHHHHHHHHHHHHhhcCccccccc
Q 015117 31 QVSSKTRFLNVALVVGDCILVGLQPILV----FTTK-VDG-GFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSL 104 (413)
Q Consensus 31 ~~~~k~~~l~vl~v~~~~~~~~~~~il~----~~s~-~~g-~~~y~~~tvV~l~E~~Kl~is~~~l~~~~~~~~~~~~~~ 104 (413)
+...+.....++++.+....|..++++. +..+ +|+ +|. ++...+|++.+..++++..++..++...
T Consensus 6 ~~~~~~~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~-~~~fL~~~q~l~~~~~s~~~l~~~k~~~------- 77 (327)
T KOG1581|consen 6 GGMANKIILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFE-HSLFLVFCQRLVALLVSYAMLKWWKKEL------- 77 (327)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcceeecccCccccccc-ccHHHHHHHHHHHHHHHHHHHhcccccC-------
Confidence 3344555666777777777777776665 2222 233 443 4578899999999999988776544321
Q ss_pred cccchhcccchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHH
Q 015117 105 LSFSTIAQMPVISFILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQW 184 (413)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw 184 (413)
++.+ ..++|...++.+.+...++|.||+|++.+|+.+.+++|++.++++..++.|+|++.+++
T Consensus 78 -~~~a----------------pl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eY 140 (327)
T KOG1581|consen 78 -SGVA----------------PLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEY 140 (327)
T ss_pred -CCCC----------------chhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHH
Confidence 1111 14588999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHH
Q 015117 185 EALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFL 264 (413)
Q Consensus 185 ~al~Ll~~GV~lv~~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~ 264 (413)
+..++...||.++.+.+..++....+.+..++|+.++...-+++|+.+..+++++|++ +.+.|.++..+.+|+++.+..
T Consensus 141 l~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~-k~s~~~mM~~vNLf~~i~~~~ 219 (327)
T KOG1581|consen 141 LVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKY-KVSSLHMMFGVNLFSAILNGT 219 (327)
T ss_pred HHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccC-CccHhHHHHHHHHHHHHHHHH
Confidence 9999999999998876544333344545667899999999999999999999999976 789999999999999999987
Q ss_pred HHHHHHhhcCCC--ccccccCChhHHHHHH---HHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcH
Q 015117 265 GIVITAMFKGPS--SFDILQGHSKATMLLI---CNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTM 339 (413)
Q Consensus 265 ~ll~~~~~~~~~--~~~~~~g~~~~~~~~i---l~~aiggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~ 339 (413)
.++. +|.. ...|...++...|-+. ...++|+.++.+.++..++++-...+..+-++++++|+++|||++++
T Consensus 220 ~li~----qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~ 295 (327)
T KOG1581|consen 220 YLIL----QGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSS 295 (327)
T ss_pred hhhc----CCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccch
Confidence 7442 3321 2244455554444333 46788999999999999999988888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 015117 340 NFILGISIVFISMHQFFS 357 (413)
Q Consensus 340 ~~~lG~~LVi~gv~ly~~ 357 (413)
.+++|..+|+.|+++=..
T Consensus 296 ~q~~g~~iVFg~i~l~~~ 313 (327)
T KOG1581|consen 296 EQWLGVLIVFGGIFLEIL 313 (327)
T ss_pred hhccCeeeehHHHHHHHH
Confidence 999999999999876444
No 6
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.91 E-value=1.5e-21 Score=193.73 Aligned_cols=233 Identities=15% Similarity=0.179 Sum_probs=182.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 015117 125 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPE 204 (413)
Q Consensus 125 r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~~~~ 204 (413)
++.|+|.+.|++++..|++...|++|++.+.+|++.++.+++++++++++||+|+++.||+|+++.++|+.++...+...
T Consensus 77 ~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~ 156 (334)
T PF06027_consen 77 RPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLS 156 (334)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999887665432
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCC
Q 015117 205 GTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGH 284 (413)
Q Consensus 205 ~~~~~~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~~~~~~g~ 284 (413)
+++..+.+....|++++++++++.|++.|+.|+..|+. +......++.++|.+++.+.+.+ .+..+... + .|
T Consensus 157 ~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~---~~~~~lg~~Glfg~ii~~iq~~i---le~~~i~~-~-~w 228 (334)
T PF06027_consen 157 GSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKA---PRVEFLGMLGLFGFIISGIQLAI---LERSGIES-I-HW 228 (334)
T ss_pred cccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHHHHHHHHHHHHHh---eehhhhhc-c-CC
Confidence 22222233446799999999999999999999999964 45555677788888887765432 23221111 1 23
Q ss_pred hhHHHHHHHH----HHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcccCC
Q 015117 285 SKATMLLICN----NAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLS 360 (413)
Q Consensus 285 ~~~~~~~il~----~aiggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~~~~ 360 (413)
++..+...+. ..+.-.++..++++.++..-+....++.+++.++++++||+++++..++|.++|++|..+|+..+.
T Consensus 229 ~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 229 TSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES 308 (334)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence 4433332221 122234667888999988888888888999999999999999999999999999999999987655
Q ss_pred cCCCC
Q 015117 361 KVKDE 365 (413)
Q Consensus 361 ~~~~~ 365 (413)
+.+++
T Consensus 309 ~~~~~ 313 (334)
T PF06027_consen 309 PEEEA 313 (334)
T ss_pred ccccc
Confidence 55443
No 7
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.89 E-value=5.3e-20 Score=185.32 Aligned_cols=285 Identities=12% Similarity=0.102 Sum_probs=183.8
Q ss_pred HhhhhhhheecccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccchhcccchHHHHHHHhhhhhhHH
Q 015117 51 VGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQMPVISFILLQAARNNVLL 130 (413)
Q Consensus 51 ~~~~~il~~~s~~~g~~~y~~~tvV~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 130 (413)
|+.+-++.|.+-++| .++...++.+-.+-.++.+.+....+++.. .+. ..+|+...+
T Consensus 25 ~~~~~~~~k~a~~~G---~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~---~~~-----------------~~~~~~~~l 81 (358)
T PLN00411 25 VVGISTLFKVATSKG---LNIYPFLGYSYLLASLLLLPSLFFTNRSRS---LPP-----------------LSVSILSKI 81 (358)
T ss_pred HHHHHHHHHHHHHCC---CCccHHHHHHHHHHHHHHHHHHHHHHHhcc---cCc-----------------chHHHHHHH
Confidence 444445566665554 445556666665554444433333222110 010 012334466
Q ss_pred HHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHH------hcCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 015117 131 AVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKII------MKRRFSIIQWEALALLLIGISVNQLRSLPE 204 (413)
Q Consensus 131 ~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~ll------L~~kls~~qw~al~Ll~~GV~lv~~~~~~~ 204 (413)
++.+++.++++.+.|.+++|++++...++.++.|++|+++++++ +|||++++||+++++.++|++++...+.+.
T Consensus 82 ~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~ 161 (358)
T PLN00411 82 GLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPR 161 (358)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcc
Confidence 66777666777899999999999999999999999999999999 699999999999999999998876432210
Q ss_pred C--------------C--CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHH-HHHHHHHHHH
Q 015117 205 G--------------T--SALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGY-GAIFNFLGIV 267 (413)
Q Consensus 205 ~--------------~--~~~~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~-g~l~~l~~ll 267 (413)
. . ...+......|.+++++++++++++.+..++..++++ +....+.+...+ +..+..+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~l- 238 (358)
T PLN00411 162 VFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP--AAFTVSFLYTVCVSIVTSMIGL- 238 (358)
T ss_pred cccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--cHhHHHHHHHHHHHHHHHHHHH-
Confidence 0 0 0001111234888999999999999999999988762 222223332222 222222222
Q ss_pred HHHhhcCCCccccccCChhHHHHHHHHHHHHH----HHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHH
Q 015117 268 ITAMFKGPSSFDILQGHSKATMLLICNNAAQG----ILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFIL 343 (413)
Q Consensus 268 ~~~~~~~~~~~~~~~g~~~~~~~~il~~aigg----l~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~l 343 (413)
..++.........++...+. +++.++.. .+-.+.+|+.++...+....+.|+++++++++++||++++.+++
T Consensus 239 ---~~~~~~~~~~~~~~~~~~~~-i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~i 314 (358)
T PLN00411 239 ---VVEKNNPSVWIIHFDITLIT-IVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLI 314 (358)
T ss_pred ---HHccCCcccceeccchHHHH-HHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 22221111112233333332 44444432 22334667888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCcCCCCCC
Q 015117 344 GISIVFISMHQFFSPLSKVKDEPK 367 (413)
Q Consensus 344 G~~LVi~gv~ly~~~~~~~~~~~~ 367 (413)
|.++|+.|+++... .+.||.+|
T Consensus 315 G~~LIl~Gv~l~~~--~~~~~~~~ 336 (358)
T PLN00411 315 GGILITLGFYAVMW--GKANEEKD 336 (358)
T ss_pred HHHHHHHHHHHHHh--hhhhhhhh
Confidence 99999999999876 33444433
No 8
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.84 E-value=3.9e-19 Score=167.70 Aligned_cols=288 Identities=17% Similarity=0.164 Sum_probs=198.4
Q ss_pred hhheecc---cCCc----ccchhHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccchhcccchHHHHHHHh--hhh
Q 015117 56 ILVFTTK---VDGG----FKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQMPVISFILLQA--ARN 126 (413)
Q Consensus 56 il~~~s~---~~g~----~~y~~~tvV~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~r~ 126 (413)
++.||+. .+|. .++-.+...|+.|+..+.+-..+-.+..+ .+...-++ ++. -|. +-+
T Consensus 20 l~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~---~g~~s~~~--~il---------sq~~~pf~ 85 (372)
T KOG3912|consen 20 LVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNG---QGVSSDLD--SIL---------SQDSSPFN 85 (372)
T ss_pred HHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcccccc--ccc---------ccccCCCC
Confidence 3567765 2322 24555788899999887654444332222 22222110 000 011 122
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCC-C
Q 015117 127 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPE-G 205 (413)
Q Consensus 127 ~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~~~~-~ 205 (413)
...+.-||++......+.|+++.+.+++.||+++..-++||++|+..+|||+++.+||+++....+|++++...+... .
T Consensus 86 p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~ 165 (372)
T KOG3912|consen 86 PVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVT 165 (372)
T ss_pred cceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeeccccc
Confidence 345666999999999999999999999999999999999999999999999999999999999999999987553211 1
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHH-HHHHHHHHHHHHhhcCCC----cccc
Q 015117 206 TSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYG-AIFNFLGIVITAMFKGPS----SFDI 280 (413)
Q Consensus 206 ~~~~~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g-~l~~l~~ll~~~~~~~~~----~~~~ 280 (413)
++-........|.++++.+.++-|+..|+.||.+|++ +.++..-.-+-..|| .++++.++....+..+.. +.|.
T Consensus 166 ~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~-nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~ 244 (372)
T KOG3912|consen 166 DPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKS-NVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGV 244 (372)
T ss_pred CCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhc-cCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcc
Confidence 1111111234589999999999999999999999987 555554445557777 444444444433333311 1232
Q ss_pred ccCChhHHHH-----HHHHHHHHHHHHH---------HHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 015117 281 LQGHSKATML-----LICNNAAQGILSS---------FFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGIS 346 (413)
Q Consensus 281 ~~g~~~~~~~-----~il~~aiggl~vs---------~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~ 346 (413)
++.|.. +|. ..+..+.+|..++ .+.|+.++.++....++++.+.++++..++.|.+...+++|.+
T Consensus 245 ~eD~~~-~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFl 323 (372)
T KOG3912|consen 245 LEDWGD-AFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFL 323 (372)
T ss_pred hhhHHH-HHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHH
Confidence 333321 111 1122333343333 6679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccC
Q 015117 347 IVFISMHQFFSPL 359 (413)
Q Consensus 347 LVi~gv~ly~~~~ 359 (413)
+.+.|+++|+...
T Consensus 324 iLi~Gi~lY~~il 336 (372)
T KOG3912|consen 324 ILIMGIILYNQIL 336 (372)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998643
No 9
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.83 E-value=1.2e-17 Score=168.01 Aligned_cols=298 Identities=11% Similarity=0.125 Sum_probs=196.2
Q ss_pred ccccccCCcccchhhHHHHHHHHHHHHHHHhhhhhhheecccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcCcccc
Q 015117 22 SRAYDRHRHQVSSKTRFLNVALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGE 101 (413)
Q Consensus 22 ~~~~~~~~~~~~~k~~~l~vl~v~~~~~~~~~~~il~~~s~~~g~~~y~~~tvV~l~E~~Kl~is~~~l~~~~~~~~~~~ 101 (413)
.+.+++.-..+..|-..++..+...+.... +..|+.-++ ++| |.++..++-++..+++..+.. .+.+ .
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~wy~~s~~~~----~~nK~vl~~--~~~-P~~l~~~~~~~~~l~~~~~~~-~~~~----~ 103 (350)
T PTZ00343 36 YHSLFESFPNFKWKLALLFLTWYALNVLYV----VDNKLALNM--LPL-PWTISSLQLFVGWLFALLYWA-TGFR----K 103 (350)
T ss_pred ccchhhccCcccHHHHHHHHHHHHHHHHHH----HHHHHHHHh--CCh-hHHHHHHHHHHHHHHHHHHHH-hCCC----C
Confidence 333344334455666666666655554331 222322222 223 788888887777665544321 1111 0
Q ss_pred ccccccchhcccchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCH
Q 015117 102 KSLLSFSTIAQMPVISFILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSI 181 (413)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~ 181 (413)
++... .. .++.......++++...+...+.++++.+++.+++++.+.|++|++++++++|||+++
T Consensus 104 ~~~~~--~~-------------~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~ 168 (350)
T PTZ00343 104 IPRIK--SL-------------KLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNL 168 (350)
T ss_pred CCCCC--CH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccH
Confidence 11110 00 0122356667777777777788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCC--CchHHHHHHH--HHH
Q 015117 182 IQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYD--TSIYHQNLFL--YGY 257 (413)
Q Consensus 182 ~qw~al~Ll~~GV~lv~~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~--~s~~~~n~~l--~~~ 257 (413)
++|+++++.++|+++....+ ...+..|+++++++++++++.+++.||.+++.+. .+....+.+. ..+
T Consensus 169 ~~~l~l~l~v~Gv~l~~~~~---------~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (350)
T PTZ00343 169 YAYLSLIPIVGGVALASVKE---------LHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLI 239 (350)
T ss_pred HHHHHHHHHHHHHHheeccc---------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHH
Confidence 99999999999999975321 1234569999999999999999999999876421 1222233443 456
Q ss_pred HHHHHHHHHHHHHhhcCCCccc-------cccCChh-HHHHHHHHHHHHHHHHH----HHHHhhhhhHHHHHhHHHHHHH
Q 015117 258 GAIFNFLGIVITAMFKGPSSFD-------ILQGHSK-ATMLLICNNAAQGILSS----FFFKYADTILKKYSSTVATIFT 325 (413)
Q Consensus 258 g~l~~l~~ll~~~~~~~~~~~~-------~~~g~~~-~~~~~il~~aiggl~vs----~v~Ky~~~i~k~~a~s~~iv~t 325 (413)
|.++.+|..+. .++..... .+..+.+ ..+..++..++...+.. +.+++.++...+.+..+.++++
T Consensus 240 ~~l~~lp~~~~---~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~ 316 (350)
T PTZ00343 240 ASLISLPLVLF---FEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVI 316 (350)
T ss_pred HHHHHHHHHHH---HhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 66666665432 12211000 1112211 11222333333333333 4778899999999999999999
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccc
Q 015117 326 GLASAALFGHTLTMNFILGISIVFISMHQFFSP 358 (413)
Q Consensus 326 ~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~~ 358 (413)
+++|+++|||++|..+++|.++++.|+++|+..
T Consensus 317 iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 317 IVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred hhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999863
No 10
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.83 E-value=1.4e-17 Score=163.71 Aligned_cols=272 Identities=14% Similarity=0.161 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhheecccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccchhcccchHH
Q 015117 38 FLNVALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQMPVIS 117 (413)
Q Consensus 38 ~l~vl~v~~~~~~~~~~~il~~~s~~~g~~~y~~~tvV~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (413)
....+++...++.++..++..|.. . +++|..+++.+-++..++-+.++..+++.. . ..+ .
T Consensus 7 ~~g~~~~l~a~~~wg~~~~~~k~~-~----~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~-----~-~~~-~-------- 66 (296)
T PRK15430 7 RQGVLLALAAYFIWGIAPAYFKLI-Y----YVPADEILTHRVIWSFFFMVVLMSICRQWS-----Y-LKT-L-------- 66 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-c----CCCHHHHHHHHHHHHHHHHHHHHHHHccHH-----H-HHH-H--------
Confidence 345667777888899988888753 2 277888999998887654444333222110 0 000 0
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 015117 118 FILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN 197 (413)
Q Consensus 118 ~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv 197 (413)
.+.+++.......++.+++++.+.|++++++|+++..++.++.|+++++++++++|||++++||.++++.++|+.++
T Consensus 67 ---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li 143 (296)
T PRK15430 67 ---IQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQ 143 (296)
T ss_pred ---HcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 01122222344566778899999999999999999999999999999999999999999999999999999999987
Q ss_pred hcCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 015117 198 QLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS 277 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~ 277 (413)
..+. ++ . .+++++++++++++.++.||..++. .......+.++..++.+. .+. ......
T Consensus 144 ~~~~---~~----~------~~~~l~aa~~~a~~~i~~r~~~~~~-~~~~~~~~~~~~~~~~~~----~~~--~~~~~~- 202 (296)
T PRK15430 144 LWTF---GS----L------PIIALGLAFSFAFYGLVRKKIAVEA-QTGMLIETMWLLPVAAIY----LFA--IADSST- 202 (296)
T ss_pred HHHc---CC----c------cHHHHHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHHHHH----HHH--HccCCc-
Confidence 5321 11 0 1356778899999999988864321 112223333332222221 110 011110
Q ss_pred cccccCChhHHHHHH----HHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 015117 278 FDILQGHSKATMLLI----CNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMH 353 (413)
Q Consensus 278 ~~~~~g~~~~~~~~i----l~~aiggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ 353 (413)
......++..|..+ +..+++..+....+|+.++...+...++.++++.+++++++||+++..+++|+++|+.++-
T Consensus 203 -~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~ 281 (296)
T PRK15430 203 -SHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALA 281 (296)
T ss_pred -ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 00111111112222 2344556677788899999999999999999999999999999999999999999977654
Q ss_pred H
Q 015117 354 Q 354 (413)
Q Consensus 354 l 354 (413)
+
T Consensus 282 v 282 (296)
T PRK15430 282 I 282 (296)
T ss_pred H
Confidence 3
No 11
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.82 E-value=6.8e-18 Score=166.09 Aligned_cols=216 Identities=12% Similarity=0.151 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 015117 129 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSA 208 (413)
Q Consensus 129 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~~~~~~~~ 208 (413)
.....++++++++.+.+.+++|++++.++++.++.|+++++++++++|||+++++|+++++.++|+++....+ .
T Consensus 67 ~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~---~--- 140 (302)
T TIGR00817 67 LLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE---L--- 140 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc---c---
Confidence 5666677788889999999999999999999999999999999999999999999999999999998753211 1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--cccccc---C
Q 015117 209 LGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPS--SFDILQ---G 283 (413)
Q Consensus 209 ~~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~--~~~~~~---g 283 (413)
+.+..|++++++++++++++.++.||..+++ +.+.+..+.+....+.++.+|.... .++.. ..+... .
T Consensus 141 ---~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~~~~l~p~~~~---~~~~~~~~~~~~~~~~~ 213 (302)
T TIGR00817 141 ---SFNWAGFLSAMISNITFVSRNIFSKKAMTIK-SLDKTNLYAYISIMSLFLLSPPAFI---TEGPPFLPHGFMQAISG 213 (302)
T ss_pred ---cccHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCcccHHHHHHHHHHHHHHHHHHH---HcchHHHHHHHHHhhcc
Confidence 1234599999999999999999999988732 2234444455555666555554332 22211 000000 0
Q ss_pred Chh-HHHHHHHHHHHHH-----HHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcc
Q 015117 284 HSK-ATMLLICNNAAQG-----ILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 357 (413)
Q Consensus 284 ~~~-~~~~~il~~aigg-----l~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~ 357 (413)
.+. ..|..++..+++. ......+|+.++.+.+....+.+++++++|++++||++|..+++|+++++.|+++|+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 214 VNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 111 1222222222211 1222468889999999999999999999999999999999999999999999999986
No 12
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.81 E-value=6.6e-17 Score=158.59 Aligned_cols=276 Identities=12% Similarity=0.117 Sum_probs=191.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhheecccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccchhccc
Q 015117 34 SKTRFLNVALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQM 113 (413)
Q Consensus 34 ~k~~~l~vl~v~~~~~~~~~~~il~~~s~~~g~~~y~~~tvV~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (413)
.++..-.++.++...+.+|+..+.+|...++ .+|...++++-++-.++-+.+...++++ .+ +
T Consensus 3 ~~~~~~~~~~~~~~~~iWg~~~~~~K~~~~~----~~p~~~~~~R~~~a~l~ll~~~~~~~~~-----~~--~------- 64 (292)
T PRK11272 3 FRQLLPLFGALFALYIIWGSTYLVIRIGVES----WPPLMMAGVRFLIAGILLLAFLLLRGHP-----LP--T------- 64 (292)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHhCCC-----CC--c-------
Confidence 4566667777888888999988888865443 6788888888777765544444332211 00 0
Q ss_pred chHHHHHHHhhhhhhHHHHHHHH-HHHHHHHHHHHH-hhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 015117 114 PVISFILLQAARNNVLLAVPAFL-YAINNYLKFIMQ-LYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLL 191 (413)
Q Consensus 114 ~~~~~~~~~~~r~~~~~~vpAll-y~~~n~L~f~al-~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~ 191 (413)
. ++.....+.+.+ ...++.+.|.+. ++++++...++..+.|+++++++.+ +|||++++||.++++.+
T Consensus 65 -------~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~ 133 (292)
T PRK11272 65 -------L---RQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGL 133 (292)
T ss_pred -------H---HHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHH
Confidence 0 111123444444 456788889998 9999999999999999999999985 79999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 015117 192 IGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAM 271 (413)
Q Consensus 192 ~GV~lv~~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~ 271 (413)
+|+.++..++. . +....|.++.+++++++++++++.+|..+. .+......++. .+.+...+...
T Consensus 134 ~Gv~ll~~~~~--~------~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~---- 197 (292)
T PRK11272 134 AGIVLLNSGGN--L------SGNPWGAILILIASASWAFGSVWSSRLPLP---VGMMAGAAEML-AAGVVLLIASL---- 197 (292)
T ss_pred HhHHHHhcCcc--c------ccchHHHHHHHHHHHHHHHHHHHHHhcCCC---cchHHHHHHHH-HHHHHHHHHHH----
Confidence 99988753321 1 112358899999999999999999997543 23333333333 33332222211
Q ss_pred hcCCCccccccCChhHHHHHHHHHHHHHH-----HHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 015117 272 FKGPSSFDILQGHSKATMLLICNNAAQGI-----LSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGIS 346 (413)
Q Consensus 272 ~~~~~~~~~~~g~~~~~~~~il~~aiggl-----~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~ 346 (413)
..+.. .....+...|..+++.++.+. +....+|+.+....+...++.++++++++++++||++|..+++|.+
T Consensus 198 ~~~~~---~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~ 274 (292)
T PRK11272 198 LSGER---LTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALG 274 (292)
T ss_pred HcCCc---ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 12211 111123344555555555444 4445567888888888888999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 015117 347 IVFISMHQFFS 357 (413)
Q Consensus 347 LVi~gv~ly~~ 357 (413)
+++.|+++.+.
T Consensus 275 lIi~gv~~~~~ 285 (292)
T PRK11272 275 VIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHHHH
Confidence 99999987755
No 13
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.81 E-value=8.5e-17 Score=158.32 Aligned_cols=274 Identities=16% Similarity=0.123 Sum_probs=180.0
Q ss_pred HHHHHHHHHhhhhhhheecccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccchhcccchHHHHHHH
Q 015117 43 LVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQMPVISFILLQ 122 (413)
Q Consensus 43 ~v~~~~~~~~~~~il~~~s~~~g~~~y~~~tvV~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (413)
+....++.+|+..+.+|..-+ ..+|...++++-.+-.++.+.+. .+++ ++
T Consensus 8 ~~l~~~~~Wg~~~~~~k~~~~----~~~p~~~~~~R~~~a~~~l~~~~--~~~~-----~~------------------- 57 (299)
T PRK11453 8 LALLVVVVWGLNFVVIKVGLH----NMPPLMLAGLRFMLVAFPAIFFV--ARPK-----VP------------------- 57 (299)
T ss_pred HHHHHHHHHhhhHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHh--cCCC-----Cc-------------------
Confidence 345567788888888775443 26788888888665432222111 1110 00
Q ss_pred hhhhhhHHHHHHH-HHHHHHHHHHHHHhh-cChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 015117 123 AARNNVLLAVPAF-LYAINNYLKFIMQLY-FNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 200 (413)
Q Consensus 123 ~~r~~~~~~vpAl-ly~~~n~L~f~al~~-l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~ 200 (413)
++ ....-++ .+..+..+.|.++++ ++++...++.++.|+++++++++++|||++++||+++++.++|+.++..+
T Consensus 58 -~~---~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~ 133 (299)
T PRK11453 58 -LN---LLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred -hH---HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence 01 1111122 234555677889887 78899999999999999999999999999999999999999999887643
Q ss_pred CCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-c
Q 015117 201 SLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSF-D 279 (413)
Q Consensus 201 ~~~~~~~~~~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~~-~ 279 (413)
+. ++ .+.+..|+++.++++++++++.++.+|..++.++......+.+....+. .+........+++... .
T Consensus 134 ~~-~~-----~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 204 (299)
T PRK11453 134 SL-NG-----QHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPI---IPFFVASLILDGSATMIH 204 (299)
T ss_pred cC-CC-----cchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHH---HHHHHHHHHhcCchhhhh
Confidence 21 11 1122358999999999999999999998665311111111122222211 1211111122322110 1
Q ss_pred cccCChhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 015117 280 ILQGHSKATMLLICNNAAQGILSSFFF-----KYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQ 354 (413)
Q Consensus 280 ~~~g~~~~~~~~il~~aiggl~vs~v~-----Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~l 354 (413)
.+..+++..|..+++.++.+..+++.. |+.++...+...++.|+++.+++++++||+++..+++|+++|+.|+++
T Consensus 205 ~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l 284 (299)
T PRK11453 205 SLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYI 284 (299)
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Confidence 123445566777777666666555444 566777777888899999999999999999999999999999999987
Q ss_pred hcccC
Q 015117 355 FFSPL 359 (413)
Q Consensus 355 y~~~~ 359 (413)
-..+.
T Consensus 285 ~~~~~ 289 (299)
T PRK11453 285 NVFGL 289 (299)
T ss_pred Hhcch
Confidence 65543
No 14
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.80 E-value=9.3e-19 Score=161.57 Aligned_cols=257 Identities=15% Similarity=0.173 Sum_probs=195.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccchhcccchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 015117 67 FKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQMPVISFILLQAARNNVLLAVPAFLYAINNYLKFI 146 (413)
Q Consensus 67 ~~y~~~tvV~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vpAlly~~~n~L~f~ 146 (413)
+.|. -+.||+.....-+++-+++..+.+.+ +++. ..+.|+-.++.|.+...-...
T Consensus 50 FTfa-laLVf~qC~~N~vfAkvl~~ir~~~~------------~D~t------------~~~~YaAcs~sYLlAMVssN~ 104 (337)
T KOG1580|consen 50 FTFA-LALVFFQCTANTVFAKVLFLIRKKTE------------IDNT------------PTKMYAACSASYLLAMVSSNQ 104 (337)
T ss_pred ehHH-HHHHHHHHHHHHHHHHhheeeccccc------------ccCC------------cchHHHHHHHHHHHHHHhccc
Confidence 4443 57888888888887766554332211 1111 145788899999999999999
Q ss_pred HHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhHHHHHHHHHH
Q 015117 147 MQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVT 226 (413)
Q Consensus 147 al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~~~~~~~~~~~~~~~~G~ll~L~a~~ 226 (413)
|++++|.+|..+-+++||+.++|+.+++.+|+++++++.++++..+||+++.+.+...+... ......|-++.+++-.
T Consensus 105 Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e--~~t~g~GElLL~lSL~ 182 (337)
T KOG1580|consen 105 ALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAE--DKTFGFGELLLILSLA 182 (337)
T ss_pred hhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCc--ccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987743222110 0112347788889989
Q ss_pred HHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--cccccCChhHHHH---HHHHHHHHHHH
Q 015117 227 VPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS--FDILQGHSKATML---LICNNAAQGIL 301 (413)
Q Consensus 227 ~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~--~~~~~g~~~~~~~---~il~~aiggl~ 301 (413)
..|+.++.+|++.+.+ .++-..++..+++|+.+....+++ +.|+.. .-|.+.++...|- +-+...+|+.+
T Consensus 183 mDGlTg~~Qdrira~y-q~~g~~MM~~~NlwStL~Lg~g~l----fTGElweF~yF~~RhP~~~~~l~l~ai~s~LGQ~f 257 (337)
T KOG1580|consen 183 MDGLTGSIQDRIRASY-QRTGTSMMFYTNLWSTLYLGAGLL----FTGELWEFFYFVQRHPYVFWDLTLLAIASCLGQWF 257 (337)
T ss_pred hcccchhHHHHHHHhh-ccCchhhHHHHHHHHHHHhhhhhe----ehhhHHHHHHHHHhccHHHHHHHHHHHHHHhhhHH
Confidence 9999999999998876 333334456677888877666654 344321 1123444443332 23466789999
Q ss_pred HHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015117 302 SSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 355 (413)
Q Consensus 302 vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly 355 (413)
+...+.+.+..+.+..++.+-.||++.|+++|+++++..+|+|..+|+.+...=
T Consensus 258 IF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 258 IFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTAD 311 (337)
T ss_pred HHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhH
Confidence 999999999999999999999999999999999999999999999999997643
No 15
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.78 E-value=2.7e-16 Score=150.61 Aligned_cols=205 Identities=15% Similarity=0.119 Sum_probs=152.5
Q ss_pred HHHHH-HHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 015117 130 LAVPA-FLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSA 208 (413)
Q Consensus 130 ~~vpA-lly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~~~~~~~~ 208 (413)
+.+.+ +...+++.+.|.|++|+++++..++.++.|+++++++.+++|||++++||.++++.++|+.++..++. .
T Consensus 49 ~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~--~--- 123 (260)
T TIGR00950 49 LLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN--L--- 123 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc--c---
Confidence 44444 45678999999999999999999999999999999999999999999999999999999998754321 1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHH
Q 015117 209 LGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKAT 288 (413)
Q Consensus 209 ~~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~~~~~~g~~~~~ 288 (413)
.....|+++.++++++++..+++.+|..++. +.+....+.+....+.++..+... ..++.. ..+...
T Consensus 124 ---~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~-----~~~~~~ 190 (260)
T TIGR00950 124 ---SINPAGLLLGLGSGISFALGTVLYKRLVKKE-GPELLQFTGWVLLLGALLLLPFAW----FLGPNP-----QALSLQ 190 (260)
T ss_pred ---cccHHHHHHHHHHHHHHHHHHHHHhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHH----hcCCCC-----CcchHH
Confidence 1224588999999999999999999988754 222222222333444444333322 122211 112233
Q ss_pred HHHHH-----HHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 015117 289 MLLIC-----NNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISM 352 (413)
Q Consensus 289 ~~~il-----~~aiggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv 352 (413)
|..++ ...++..+....+|+.+....+...++.++++.+++++++||+++...++|..+++.|+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 191 WGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 33232 33344455666788899889899999999999999999999999999999999999885
No 16
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.74 E-value=2.7e-15 Score=147.39 Aligned_cols=271 Identities=13% Similarity=0.072 Sum_probs=173.7
Q ss_pred HHHHHHHHHHhhhhhhheecccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccchhcccchHHHHHH
Q 015117 42 ALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQMPVISFILL 121 (413)
Q Consensus 42 l~v~~~~~~~~~~~il~~~s~~~g~~~y~~~tvV~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (413)
++....++.+++.-+..|..-++ ++|....+++-.+-.++-+.+ . ..++ .+.
T Consensus 7 l~~l~a~~~Wg~~~~~~k~~~~~----~~P~~~~~~R~~~a~l~l~~~--~-~~~~-------~~~-------------- 58 (295)
T PRK11689 7 LIGLIAILLWSTMVGLIRGVSES----LGPVGGAAMIYSVSGLLLLLT--V-GFPR-------LRQ-------------- 58 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc----CChHHHHHHHHHHHHHHHHHH--c-cccc-------ccc--------------
Confidence 34555666777776666654332 678777777744443332221 1 1110 000
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHhh----cChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 015117 122 QAARNNVLLAVPAFLYAINNYLKFIMQLY----FNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN 197 (413)
Q Consensus 122 ~~~r~~~~~~vpAlly~~~n~L~f~al~~----l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv 197 (413)
+.++ ....-++.++.++.+.|.++++ +++.+..++..+.|+++++++++++|||++++||.++++.++|+.++
T Consensus 59 ~~~~---~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li 135 (295)
T PRK11689 59 FPKR---YLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWV 135 (295)
T ss_pred ccHH---HHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhe
Confidence 0011 1122334466777778877754 68888899999999999999999999999999999999999999887
Q ss_pred hcCCCCCC-CCC-CCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015117 198 QLRSLPEG-TSA-LGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGP 275 (413)
Q Consensus 198 ~~~~~~~~-~~~-~~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~ 275 (413)
..++.+.+ .+. .+......|+++++++++++++++++.||..++. + +. . ......+..+ .+... .++.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~-~~-~--~~~~~~~~~l-~~~~~----~~~~ 205 (295)
T PRK11689 136 LGGDNGLSLAELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK-N-GI-T--LFFILTALAL-WIKYF----LSPQ 205 (295)
T ss_pred ecCCccchhhhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC-C-ch-h--HHHHHHHHHH-HHHHH----HhcC
Confidence 64432100 000 0111123488999999999999999999986553 2 22 1 1111222221 11111 2221
Q ss_pred CccccccCChhHHHHHHHHHHH----HHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 015117 276 SSFDILQGHSKATMLLICNNAA----QGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFIS 351 (413)
Q Consensus 276 ~~~~~~~g~~~~~~~~il~~ai----ggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~g 351 (413)
. ....++..|..+++.++ +-.+-.+.+|+.++...+...++.|+++.+++++++||+++..+++|+++|+.|
T Consensus 206 ~----~~~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~g 281 (295)
T PRK11689 206 P----AMVFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAG 281 (295)
T ss_pred c----cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Confidence 1 12234444444444332 223444677888999999999999999999999999999999999999999999
Q ss_pred HHHhcc
Q 015117 352 MHQFFS 357 (413)
Q Consensus 352 v~ly~~ 357 (413)
+++...
T Consensus 282 v~~~~~ 287 (295)
T PRK11689 282 SLLCWL 287 (295)
T ss_pred HHHHhh
Confidence 876543
No 17
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.74 E-value=5.8e-15 Score=144.93 Aligned_cols=264 Identities=12% Similarity=-0.005 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHhhhhhhheecccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccchhcccchHHHHH
Q 015117 41 VALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQMPVISFIL 120 (413)
Q Consensus 41 vl~v~~~~~~~~~~~il~~~s~~~g~~~y~~~tvV~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (413)
+.++...++.++....+.|+.-+ +++|...++.+-++-.++-+.+..+ .+.. .+
T Consensus 14 ~~~~~la~~~~~~~~~~~K~~~~----~~~~~~~~~~R~~~a~l~l~~~~~~-~~~~-------~~-------------- 67 (293)
T PRK10532 14 ILLLLIAMASIQSGASLAKSLFP----LVGAPGVTALRLALGTLILIAIFKP-WRLR-------FA-------------- 67 (293)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH----HcCHHHHHHHHHHHHHHHHHHHHhH-Hhcc-------CC--------------
Confidence 45666667777777777775543 2677788888877765444333211 1100 00
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 015117 121 LQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 200 (413)
Q Consensus 121 ~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~ 200 (413)
.|+.......++++...+.+.|++++|+|++...++..+.|+++++++. |+.+..+| +.+.++|+.++..+
T Consensus 68 ---~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~~~~--~~i~~~Gv~li~~~ 138 (293)
T PRK10532 68 ---KEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVDFVW--VVLAVLGLWFLLPL 138 (293)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHHHHH--HHHHHHHHheeeec
Confidence 0112234455566788899999999999999999999999999998873 55555444 56678998876432
Q ss_pred CCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 015117 201 SLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDI 280 (413)
Q Consensus 201 ~~~~~~~~~~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~~~~ 280 (413)
+.+.+ + ....|.++.++++++++++.++.+|..+++ +......+ .+++.+...+... ..+..
T Consensus 139 ~~~~~----~--~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~---~~~~~~~~-~~~~~~~l~~~~~----~~~~~---- 200 (293)
T PRK10532 139 GQDVS----H--VDLTGAALALGAGACWAIYILSGQRAGAEH---GPATVAIG-SLIAALIFVPIGA----LQAGE---- 200 (293)
T ss_pred CCCcc----c--CChHHHHHHHHHHHHHHHHHHHHHHHhccC---CchHHHHH-HHHHHHHHHHHHH----HccCc----
Confidence 21111 1 124589999999999999999999987654 23333333 2334333333222 12211
Q ss_pred ccCChhHHHHHHHHHHH-----HHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015117 281 LQGHSKATMLLICNNAA-----QGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 355 (413)
Q Consensus 281 ~~g~~~~~~~~il~~ai-----ggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly 355 (413)
..+++..|...++.++ +-.+..+.+|+.++...+...++.++++.+++++++||+++..+++|+++|+.|+..+
T Consensus 201 -~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~ 279 (293)
T PRK10532 201 -ALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGS 279 (293)
T ss_pred -ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 1123333333333333 3335556778889999999999999999999999999999999999999999999888
Q ss_pred ccc
Q 015117 356 FSP 358 (413)
Q Consensus 356 ~~~ 358 (413)
...
T Consensus 280 ~~~ 282 (293)
T PRK10532 280 TLT 282 (293)
T ss_pred Hhc
Confidence 654
No 18
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.72 E-value=3.5e-15 Score=145.53 Aligned_cols=210 Identities=12% Similarity=0.099 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 015117 130 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSAL 209 (413)
Q Consensus 130 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~~~~~~~~~ 209 (413)
...-++....++.+.+.++++.|++....+.++.|+++++++++++|||++++||+++++.++|+.++..++. +.
T Consensus 66 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~-~~---- 140 (281)
T TIGR03340 66 LAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRF-AQ---- 140 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccc-cc----
Confidence 3444556889999999999999999999999999999999999999999999999999999999998764321 11
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCccccccCChhHH
Q 015117 210 GLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFN-FLGIVITAMFKGPSSFDILQGHSKAT 288 (413)
Q Consensus 210 ~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~-l~~ll~~~~~~~~~~~~~~~g~~~~~ 288 (413)
....|..++++++++++++.++.|+..++. +......+...++.++. .+...... ..+... ....+...
T Consensus 141 ---~~~~g~~~~l~aal~~a~~~i~~k~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~ 210 (281)
T TIGR03340 141 ---HRRKAYAWALAAALGTAIYSLSDKAAALGV---PAFYSALGYLGIGFLAMGWPFLLLYL-KRHGRS---MFPYARQI 210 (281)
T ss_pred ---cchhHHHHHHHHHHHHHHhhhhccccccch---hcccccHHHHHHHHHHHHHHHHHHHH-HHhccc---hhhhHHHH
Confidence 112366778889999999998877764432 11111112222222221 22211111 111110 00111111
Q ss_pred H----HHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 015117 289 M----LLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQ 354 (413)
Q Consensus 289 ~----~~il~~aiggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~l 354 (413)
| ...+..+++..+....+++.+....+...+++++++.+++++++||+++..+++|+++|+.|+++
T Consensus 211 ~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 211 LPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 2 12223333334444566777766666677789999999999999999999999999999999875
No 19
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.65 E-value=7e-13 Score=127.61 Aligned_cols=210 Identities=18% Similarity=0.203 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 015117 129 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLK-IIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTS 207 (413)
Q Consensus 129 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~-llL~~kls~~qw~al~Ll~~GV~lv~~~~~~~~~~ 207 (413)
......+.....+.+.|.++++++++...++.++.|++++++++ +++|||+++++|.++++.++|+.++..++..+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~- 150 (292)
T COG0697 72 LLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGI- 150 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchh-
Confidence 45566667889999999999999999999999999999999997 7779999999999999999999998765432111
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCccccccCChh
Q 015117 208 ALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQN-LFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSK 286 (413)
Q Consensus 208 ~~~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n-~~l~~~g~l~~l~~ll~~~~~~~~~~~~~~~g~~~ 286 (413)
. ...|.++.++++++.+++.++.|+.. +. .+....- .++. +..+ +......... + ...+.
T Consensus 151 ----~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~--~~~~~~~~~~~~--~~~~----~~~~~~~~~~---~--~~~~~ 211 (292)
T COG0697 151 ----L-SLLGLLLALAAALLWALYTALVKRLS-RL--GPVTLALLLQLL--LALL----LLLLFFLSGF---G--APILS 211 (292)
T ss_pred ----H-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC--ChHHHHHHHHHH--HHHH----HHHHHHhccc---c--ccCCH
Confidence 0 24588999999999999999999987 32 2221111 1111 1111 1111111111 0 11222
Q ss_pred HHHHHHH-----HHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccc
Q 015117 287 ATMLLIC-----NNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP 358 (413)
Q Consensus 287 ~~~~~il-----~~aiggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~~ 358 (413)
..|..+. ..+++..+....++..+....+......++++.+++++++||+++..+++|.++++.|+.+.+..
T Consensus 212 ~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 212 RAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 2333332 33334445556667777777777778899999999999999999999999999999999888764
No 20
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.59 E-value=6.1e-13 Score=127.79 Aligned_cols=249 Identities=11% Similarity=0.009 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHhhhhhhheecccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccchhcccchHHHH
Q 015117 40 NVALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQMPVISFI 119 (413)
Q Consensus 40 ~vl~v~~~~~~~~~~~il~~~s~~~g~~~y~~~tvV~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (413)
.++++...++.++..+++.|+. . ..+|.++++.+-++..++-..++...++++. .++..+.
T Consensus 3 g~~~~i~a~~~wg~~~~~~k~~-~----~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~--~~~~~~~------------ 63 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYSKLL-K----PLPATDILGHRMIWSFPFMLLSVTLFRQWAA--LIERLKR------------ 63 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-c----cCCHHHHHHHHHHHHHHHHHHHHHHHcchHH--HHHHHhC------------
Confidence 4567777888999999998862 1 2778999999988765443333222221100 0000000
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Q 015117 120 LLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQL 199 (413)
Q Consensus 120 ~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~ 199 (413)
.+..+......+.+++..+++.+.|++++++++++..++.++.|+++++++++++|||++++||+++++.++|++++..
T Consensus 64 -~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 64 -IQKRPLILSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred -cccchHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 0001112346777888899999999999999999999999999999999999999999999999999999999988753
Q ss_pred CCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 015117 200 RSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFD 279 (413)
Q Consensus 200 ~~~~~~~~~~~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~~~ 279 (413)
++ ++ . . +++++++++++++.++.++..+++ .. +.....+...++..+..+ ..+.....
T Consensus 143 ~~---~~------~---~-~~~l~aa~~~a~~~i~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~ 200 (256)
T TIGR00688 143 LK---GS------L---P-WEALVLAFSFTAYGLIRKALKNTD---LA--GFCLETLSLMPVAIYYLL----QTDFATVQ 200 (256)
T ss_pred Hc---CC------c---h-HHHHHHHHHHHHHHHHHhhcCCCC---cc--hHHHHHHHHHHHHHHHHH----HhccCccc
Confidence 21 11 1 1 346778899999999998865422 11 111101111111111111 11111000
Q ss_pred cccCChhHHHHHHH----HHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHH
Q 015117 280 ILQGHSKATMLLIC----NNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAAL 332 (413)
Q Consensus 280 ~~~g~~~~~~~~il----~~aiggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~l 332 (413)
... +...|..++ ..+++..+....+|+.++...+...++.|+++.++++++
T Consensus 201 ~~~--~~~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 201 QTN--PFPIWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred ccC--chhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 011 111222222 244555677788899999999999999999999998764
No 21
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.51 E-value=1.3e-14 Score=137.17 Aligned_cols=231 Identities=15% Similarity=0.174 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-cChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 015117 129 LLAVPAFLYAINNYLKFIMQLY-FNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTS 207 (413)
Q Consensus 129 ~~~vpAlly~~~n~L~f~al~~-l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~~~~~~~ 207 (413)
.|++.-.++.+.|.+..+|+.+ ++.+...++++..++.+++++++++|||+|.+|+.+++++++|+++..+.+..++..
T Consensus 66 ~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 66 DYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred hhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 5777778888889999999987 899999999999999999999999999999999999999999999987654433221
Q ss_pred --------CCCCCc--chhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHH--------
Q 015117 208 --------ALGLPV--ATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVIT-------- 269 (413)
Q Consensus 208 --------~~~~~~--~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~-------- 269 (413)
....+. ...|+.+..++.+.|+..|+|+|..+|++. ..|..+++ +.-.+++|.++..
T Consensus 146 ~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyG--Kh~~EalF---ytH~LsLP~Flf~~~div~~~ 220 (330)
T KOG1583|consen 146 KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYG--KHWKEALF---YTHFLSLPLFLFMGDDIVSHW 220 (330)
T ss_pred hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CChHHHHH---HHHHhccchHHHhcchHHHHH
Confidence 001111 235777778889999999999999999973 44444444 4556666665431
Q ss_pred -HhhcCCC-ccccccCChhHHHHHHHHHHHHH-HHHHHHHHh---hhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHH
Q 015117 270 -AMFKGPS-SFDILQGHSKATMLLICNNAAQG-ILSSFFFKY---ADTILKKYSSTVATIFTGLASAALFGHTLTMNFIL 343 (413)
Q Consensus 270 -~~~~~~~-~~~~~~g~~~~~~~~il~~aigg-l~vs~v~Ky---~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~l 343 (413)
..+.++. ....+...-+..|.-++.+.+.+ .++..|+-. .++.+.+....++-.++.++|++.|.+++|++.++
T Consensus 221 ~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~l 300 (330)
T KOG1583|consen 221 RLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWL 300 (330)
T ss_pred HHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHH
Confidence 0112211 00011111233444444444333 234333321 23444444555777899999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCcCCC
Q 015117 344 GISIVFISMHQFFSPLSKVKD 364 (413)
Q Consensus 344 G~~LVi~gv~ly~~~~~~~~~ 364 (413)
|+++|+.|+.+|.....+++.
T Consensus 301 Ga~lVF~Gt~~fa~~~~~~~~ 321 (330)
T KOG1583|consen 301 GAALVFFGTLLFANVWNHPKA 321 (330)
T ss_pred HHHHHHHHHHHHHHHHcCccc
Confidence 999999999999887777663
No 22
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.41 E-value=3.6e-13 Score=126.90 Aligned_cols=205 Identities=12% Similarity=0.091 Sum_probs=140.1
Q ss_pred HHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCC-----CCCCCcch
Q 015117 141 NYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTS-----ALGLPVAT 215 (413)
Q Consensus 141 n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~~~~~~~-----~~~~~~~~ 215 (413)
-.+.|+|++|++.+.+.++..+.|.+|++|++.+|||++|+..-++..+-+.||+++..++.-.|+. ..+.....
T Consensus 111 vmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~ 190 (346)
T KOG4510|consen 111 VMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDI 190 (346)
T ss_pred HHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccC
Confidence 3899999999999999999999999999999999999999999999999999999987665321211 11111122
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHHHHHH---
Q 015117 216 GAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLI--- 292 (413)
Q Consensus 216 ~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~~~~~~g~~~~~~~~i--- 292 (413)
.|....+.+++..+-..+..+++.|+- + ..+...+....+.+.++++... -|. .--.+.+..|...
T Consensus 191 ~gt~aai~s~lf~asvyIilR~iGk~~-h--~~msvsyf~~i~lV~s~I~~~~----ig~----~~lP~cgkdr~l~~~l 259 (346)
T KOG4510|consen 191 PGTVAAISSVLFGASVYIILRYIGKNA-H--AIMSVSYFSLITLVVSLIGCAS----IGA----VQLPHCGKDRWLFVNL 259 (346)
T ss_pred CchHHHHHhHhhhhhHHHHHHHhhccc-c--EEEEehHHHHHHHHHHHHHHhh----ccc----eecCccccceEEEEEe
Confidence 366666777666666677788887863 1 1122223334444444443321 111 0111222222211
Q ss_pred -HHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhc
Q 015117 293 -CNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 356 (413)
Q Consensus 293 -l~~aiggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~ 356 (413)
+..-+|++++.+-++.-.+--.+..+++.++++.++.+++|||.||++.+.|+++|+.++....
T Consensus 260 GvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a 324 (346)
T KOG4510|consen 260 GVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVA 324 (346)
T ss_pred hhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHH
Confidence 2334466777766655444455688899999999999999999999999999999999875543
No 23
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.41 E-value=6.5e-12 Score=118.71 Aligned_cols=221 Identities=16% Similarity=0.136 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 015117 129 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSA 208 (413)
Q Consensus 129 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~~~~~~~~ 208 (413)
.|.+.|.+-.....|..-++.|++.++..+.+++|.+.+++.+.++=|+|+...++.|..++.+|.+.+.+.+....+
T Consensus 108 tY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sP-- 185 (367)
T KOG1582|consen 108 TYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSP-- 185 (367)
T ss_pred HhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCC--
Confidence 577888888888888888999999999999999999999999999999999999999999999999999887643221
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--ccccccCChh
Q 015117 209 LGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPS--SFDILQGHSK 286 (413)
Q Consensus 209 ~~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~--~~~~~~g~~~ 286 (413)
..+..|++++-++-+++|+-|=.+||.+|..+..+ ..+.++-|..|.++.+..+. ..|+. .+.+...+++
T Consensus 186 ---NF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss-~EmvfySy~iG~vflf~~mv----lTge~f~a~~fcaehp~ 257 (367)
T KOG1582|consen 186 ---NFNLIGVMMISGALLADAVIGNVQEKAMKMNPASS-SEMVFYSYGIGFVFLFAPMV----LTGELFSAWTFCAEHPV 257 (367)
T ss_pred ---CcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCc-ceEEEeeecccHHHHHHHHH----hcccchhhhHHHHhCcH
Confidence 23456888888888889999999999999864333 22223334444444444333 34431 1233344444
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcccC
Q 015117 287 ATMLLICNNA----AQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL 359 (413)
Q Consensus 287 ~~~~~il~~a----iggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~~~ 359 (413)
.++...+.-+ +|...+-..+|..++.+....++.+--+|.++|+++|..|+|....-|..+|+.|+|+--.++
T Consensus 258 ~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 258 RTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred hHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 4443332222 233344455678888888888888889999999999999999999999999999999765533
No 24
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.32 E-value=8.1e-12 Score=123.07 Aligned_cols=224 Identities=15% Similarity=0.225 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 015117 129 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSA 208 (413)
Q Consensus 129 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~~~~~~~~ 208 (413)
...-.|+.+++...+...++++++.+.+|+++.+.|++|.++++++.+|++++.-|++++....||.+....+
T Consensus 85 ~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e------- 157 (316)
T KOG1441|consen 85 TLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTE------- 157 (316)
T ss_pred HHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecc-------
Confidence 4555688899999999999999999999999999999999999999999999999999999999998876522
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHH--HhhcCCCccc-cccCCh
Q 015117 209 LGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVIT--AMFKGPSSFD-ILQGHS 285 (413)
Q Consensus 209 ~~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~--~~~~~~~~~~-~~~g~~ 285 (413)
...+..|.+..+++.+..++..++.+++++++ +.+..-.|.. .+-..+++..++.. ...+++...+ ....|+
T Consensus 158 --~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~-~~~~~~~~ll--~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~ 232 (316)
T KOG1441|consen 158 --LSFNLFGFISAMISNLAFALRNILSKKLLTSK-GESLNSMNLL--YYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWF 232 (316)
T ss_pred --ccccHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccccCchHHH--HHhhhHHHHHHhcchHhhhcccceeeeeccccc
Confidence 12456799999999999999999999999643 2233222222 22233333322211 1122221100 122344
Q ss_pred hHHHHHHHHH---HHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcccCCcC
Q 015117 286 KATMLLICNN---AAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKV 362 (413)
Q Consensus 286 ~~~~~~il~~---aiggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~~~~~~ 362 (413)
...+..++++ -..++....++.+.++++-..+..+.-++..+.|+++|++++|+...+|+++-+.|+++|++-+.+.
T Consensus 233 ~~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~ 312 (316)
T KOG1441|consen 233 VTFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKE 312 (316)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhh
Confidence 3333333332 1123455566677777776666666667778889999999999999999999999999999855544
Q ss_pred CC
Q 015117 363 KD 364 (413)
Q Consensus 363 ~~ 364 (413)
++
T Consensus 313 ~~ 314 (316)
T KOG1441|consen 313 KK 314 (316)
T ss_pred hc
Confidence 43
No 25
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.27 E-value=3e-09 Score=104.55 Aligned_cols=209 Identities=16% Similarity=0.112 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcChHHHHHHhh-hhHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHHHHhhcCCCCC
Q 015117 130 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSN-LKVFVIALLLKIIMKRRFSIIQ----WEALALLLIGISVNQLRSLPE 204 (413)
Q Consensus 130 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q-~k~l~tAlls~llL~~kls~~q----w~al~Ll~~GV~lv~~~~~~~ 204 (413)
-.+.+++..+.|.++|.+.+++..++...+.+ +.+++.++++.+++|||.++++ ++|+++.++|+.++...+..+
T Consensus 62 g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~ 141 (290)
T TIGR00776 62 GLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKS 141 (290)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccc
Confidence 34455668999999999999999999999999 8899999999999999999999 999999999998875543211
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHH---HHHHHHHHHHHHHHHHHHHHHhhcCCCccccc
Q 015117 205 GTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYH---QNLFLYGYGAIFNFLGIVITAMFKGPSSFDIL 281 (413)
Q Consensus 205 ~~~~~~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~---~n~~l~~~g~l~~l~~ll~~~~~~~~~~~~~~ 281 (413)
.+ .........|+.+.++++++.+++.+..|+. + + .+... +..-+.+.+++++.+. .+.. .+
T Consensus 142 ~~-~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~-~-~--~~~~~~~~~~~g~~~~~~~~~~~~------~~~~----~~ 206 (290)
T TIGR00776 142 AG-IKSEFNFKKGILLLLMSTIGYLVYVVVAKAF-G-V--DGLSVLLPQAIGMVIGGIIFNLGH------ILAK----PL 206 (290)
T ss_pred cc-cccccchhhHHHHHHHHHHHHHHHHHHHHHc-C-C--CcceehhHHHHHHHHHHHHHHHHH------hccc----ch
Confidence 10 0000111348899999999999999998875 2 2 12222 2222222333332211 0110 01
Q ss_pred cCChhHHHHHHHH---HHHHHHHHHHHHH-hhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHH----HHHHHHHHHHH
Q 015117 282 QGHSKATMLLICN---NAAQGILSSFFFK-YADTILKKYSSTVATIFTGLASAALFGHTLTMNFI----LGISIVFISMH 353 (413)
Q Consensus 282 ~g~~~~~~~~il~---~aiggl~vs~v~K-y~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~----lG~~LVi~gv~ 353 (413)
.+...|..++. .+++..+.....+ +.+........+..++.+.++++++++|+.+..++ +|.++++.|+.
T Consensus 207 --~~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~ 284 (290)
T TIGR00776 207 --KKYAILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAAN 284 (290)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHH
Confidence 11122222221 2333323323335 66666666777789999999999999999999999 99999999987
Q ss_pred Hh
Q 015117 354 QF 355 (413)
Q Consensus 354 ly 355 (413)
+-
T Consensus 285 l~ 286 (290)
T TIGR00776 285 IL 286 (290)
T ss_pred HH
Confidence 64
No 26
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.27 E-value=5e-10 Score=107.81 Aligned_cols=262 Identities=18% Similarity=0.221 Sum_probs=171.8
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccchhcccchHHHHHHHhhhhhh-HHHHHHHHHHHHHH
Q 015117 64 DGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQMPVISFILLQAARNNV-LLAVPAFLYAINNY 142 (413)
Q Consensus 64 ~g~~~y~~~tvV~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~vpAlly~~~n~ 142 (413)
++.++| |..++-+.-++|+.++............ ..|... .|++.+ .++..|+.-++.-.
T Consensus 39 ~~~f~f-PLf~ts~h~~v~flfa~~~~~l~~~~~~-r~r~~~-----------------sw~~~Lr~~aPtalata~DIG 99 (349)
T KOG1443|consen 39 TKNFHF-PLFVTSLHLAVKFLFAALSRRLYQCSVP-RARVVL-----------------SWRDYLRRLAPTALATALDIG 99 (349)
T ss_pred hcCcCC-chHHHHHHHHHHHHHHHHHHHHHhccCC-ccccCC-----------------cHHHHHHHhhhhhhhhhcccc
Confidence 344666 4677788999999988775433332211 111211 233333 34555666777888
Q ss_pred HHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhHHHHHH
Q 015117 143 LKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTL 222 (413)
Q Consensus 143 L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~~~~~~~~~~~~~~~~G~ll~L 222 (413)
+..++++|++.+.|++++++.++|+-+|+..+-=||.++.-...+++..+|+.+....+.+ .+..|.++++
T Consensus 100 LSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq---------f~i~Gf~lv~ 170 (349)
T KOG1443|consen 100 LSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ---------FNIEGFFLVL 170 (349)
T ss_pred cccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc---------eeehhHHHHH
Confidence 9999999999999999999999999999999988999998888888999999988765431 3345899999
Q ss_pred HHHHHHHHHHHHHHHhhcccC--CCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc---cccccCChh-HHHHHHHHHH
Q 015117 223 IFVTVPSLASVFNEYALKSQY--DTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS---FDILQGHSK-ATMLLICNNA 296 (413)
Q Consensus 223 ~a~~~sg~a~Vy~EkllK~~~--~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~---~~~~~g~~~-~~~~~il~~a 296 (413)
++++++|+...+.++++++++ ..++.....++.-+-.+..+| ....+||+.. ...|+..+. ..|-.+...+
T Consensus 171 ~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~---~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~ 247 (349)
T KOG1443|consen 171 AASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLP---LSLLFEGLHLITSSSIFRFQDTGLILRVIGLIS 247 (349)
T ss_pred HHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHH---HHHHHcccccchhhhHHHhcCccHHHHHHHHHH
Confidence 999999999999999999762 122222223332222222222 2334566531 122222222 1233333444
Q ss_pred HHHHHHHHHHHh--------hhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcc
Q 015117 297 AQGILSSFFFKY--------ADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 357 (413)
Q Consensus 297 iggl~vs~v~Ky--------~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~ 357 (413)
++|.+ ++.+-. .+.++-+.+-...-+.+.+++..+.+++++..-++|..+...|+..|..
T Consensus 248 l~g~l-aF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 248 LGGLL-AFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHH-HHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 45542 222222 2333333344344467888999999999999999999999999988844
No 27
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.24 E-value=1.3e-08 Score=97.93 Aligned_cols=272 Identities=18% Similarity=0.223 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHhhhhhhheecccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccchhcccchHHHH
Q 015117 40 NVALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQMPVISFI 119 (413)
Q Consensus 40 ~vl~v~~~~~~~~~~~il~~~s~~~g~~~y~~~tvV~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (413)
++++-....+.+|..|...|+-+.- ++..+.--+=+....+.+.++...++.+ ...+
T Consensus 8 Gil~~l~Ay~lwG~lp~y~kll~~~-----~~~eIlahRviwS~~~~l~ll~~~r~~~-----~~~~------------- 64 (293)
T COG2962 8 GILLALLAYLLWGLLPLYFKLLEPL-----PATEILAHRVIWSFPFMLALLFLLRQWR-----ELKQ------------- 64 (293)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHH-------------
Confidence 3445555777888888777654432 2334443443444444444333222211 0000
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Q 015117 120 LLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQL 199 (413)
Q Consensus 120 ~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~ 199 (413)
..+.+|....+.+-+++-..|=.++-+|..+=..-..++=+...|++..+++.+++|||+++.||+|+++..+||..-..
T Consensus 65 ~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~ 144 (293)
T COG2962 65 LLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTW 144 (293)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 13455666677777777777777777888887888889999999999999999999999999999999999999988654
Q ss_pred CCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 015117 200 RSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFD 279 (413)
Q Consensus 200 ~~~~~~~~~~~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~~~ 279 (413)
.. + +.|. .. +.-++..|+++ ..||.+|-....++-..++.+...+. ..++ . .++..+
T Consensus 145 ~~---g----~lpw--va----l~la~sf~~Yg-l~RK~~~v~a~~g~~lE~l~l~p~al----~yl~--~-l~~~~~-- 201 (293)
T COG2962 145 LL---G----SLPW--VA----LALALSFGLYG-LLRKKLKVDALTGLTLETLLLLPVAL----IYLL--F-LADSGQ-- 201 (293)
T ss_pred Hc---C----CCcH--HH----HHHHHHHHHHH-HHHHhcCCchHHhHHHHHHHHhHHHH----HHHH--H-HhcCch--
Confidence 32 1 1221 11 22234557766 45665664322233333333322111 1111 1 122111
Q ss_pred cccCChhHHH-HHHHHHHHHHH---HHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015117 280 ILQGHSKATM-LLICNNAAQGI---LSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 355 (413)
Q Consensus 280 ~~~g~~~~~~-~~il~~aiggl---~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly 355 (413)
+....+...| +.++...+..+ +.+..-|...=.+-++.++++|.+-.+++++++||+++..++++.+.+-.|+.+|
T Consensus 202 ~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~ 281 (293)
T COG2962 202 FLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALF 281 (293)
T ss_pred hhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 2221222222 22332222222 2223335566668899999999999999999999999999999999999998888
Q ss_pred cc
Q 015117 356 FS 357 (413)
Q Consensus 356 ~~ 357 (413)
..
T Consensus 282 ~~ 283 (293)
T COG2962 282 SI 283 (293)
T ss_pred HH
Confidence 65
No 28
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.22 E-value=7.9e-10 Score=109.04 Aligned_cols=226 Identities=15% Similarity=0.198 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 015117 130 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSAL 209 (413)
Q Consensus 130 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~~~~~~~~~ 209 (413)
...-+.+.++.|.....||.+.+.+..++++++.=+||-.++.++.+||+|..+.+++++-+.||+++...+...+++..
T Consensus 162 sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~ 241 (416)
T KOG2765|consen 162 SLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLP 241 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCC
Confidence 44456678899999999999999999999999999999999999999999999999999999999999877543322211
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHH----HHHHHhhcCCCccccccCCh
Q 015117 210 GLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLG----IVITAMFKGPSSFDILQGHS 285 (413)
Q Consensus 210 ~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~----ll~~~~~~~~~~~~~~~g~~ 285 (413)
. .....|.++.+++++..|.+.+..+|-..++ +...- .++++.+.|. ++++. +++-..+ +.+. |.-.+
T Consensus 242 a-~~~llG~llaL~sA~~YavY~vllk~~~~~e-g~rvd-i~lffGfvGL-fnllllwP~l~iL~~~-~~e~---F~lP~ 313 (416)
T KOG2765|consen 242 A-SRPLLGNLLALLSALLYAVYTVLLKRKIGDE-GERVD-IQLFFGFVGL-FNLLLLWPPLIILDFF-GEER---FELPS 313 (416)
T ss_pred c-cchhHHHHHHHHHHHHHHHHHHHHHhhcccc-ccccc-HHHHHHHHHH-HHHHHHhHHHHHHHHh-ccCc---ccCCC
Confidence 1 1135688999999888888887777755443 11221 2334444443 33322 2221122 3221 22122
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-----hhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcccCC
Q 015117 286 KATMLLICNNAAQGILSSFFFK-----YADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLS 360 (413)
Q Consensus 286 ~~~~~~il~~aiggl~vs~v~K-----y~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~~~~ 360 (413)
......++..++.|.+++=.++ ..++.+.+.+.++++.++++...++=|.++|+.+++|...|+.|-++.|.+..
T Consensus 314 ~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 314 STQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred CceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 2222233344456666663332 24555666666788899999999999999999999999999999887776544
Q ss_pred cCC
Q 015117 361 KVK 363 (413)
Q Consensus 361 ~~~ 363 (413)
...
T Consensus 394 ~~~ 396 (416)
T KOG2765|consen 394 NSK 396 (416)
T ss_pred ccc
Confidence 433
No 29
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=9.4e-09 Score=100.02 Aligned_cols=226 Identities=13% Similarity=0.185 Sum_probs=152.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 015117 125 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPE 204 (413)
Q Consensus 125 r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~~~~ 204 (413)
+...++.-++++|...-.-.-.+++|++.+++.++++..|+.||+.-.+++|+|.+..-|.++++..+|.......+..
T Consensus 75 ~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~s- 153 (314)
T KOG1444|consen 75 RTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLS- 153 (314)
T ss_pred HHHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccce-
Confidence 3445777888888887777778999999999999999999999999999999999999999999999998776543321
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-cc-ccc
Q 015117 205 GTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS-FD-ILQ 282 (413)
Q Consensus 205 ~~~~~~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~-~~-~~~ 282 (413)
.+..|+.+++..+++.+...+|.||..+.. +.+-|- +..+--+++++...+.....|+.. .. -+.
T Consensus 154 --------f~~~gY~w~~~n~~~~a~~~v~~kk~vd~~-~l~~~~----lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~ 220 (314)
T KOG1444|consen 154 --------FNLRGYSWALANCLTTAAFVVYVKKSVDSA-NLNKFG----LVFYNNLLSLPPLLILSFITGELDALSLNFD 220 (314)
T ss_pred --------ecchhHHHHHHHHHHHHHHHHHHHHhhccc-ccccee----EEeehhHHHHHHHHHHHHHhcchHHHHhhcc
Confidence 122488999999999999999999988864 222221 112222333333322222223211 00 011
Q ss_pred CC-hhHHHHHHHHHHHHHHHHHHHH----HhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcc
Q 015117 283 GH-SKATMLLICNNAAQGILSSFFF----KYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 357 (413)
Q Consensus 283 g~-~~~~~~~il~~aiggl~vs~v~----Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~ 357 (413)
.+ ....|..+....+.|..+++.. +..++.+-..........+.+...+++|.+.++.-++|..+-+.|..+|+.
T Consensus 221 ~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~ 300 (314)
T KOG1444|consen 221 NWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSY 300 (314)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhh
Confidence 12 2345555666666665555433 334444333333445567777788888999999999999999999888887
Q ss_pred cCCcCCC
Q 015117 358 PLSKVKD 364 (413)
Q Consensus 358 ~~~~~~~ 364 (413)
...+.|+
T Consensus 301 ~~~~~k~ 307 (314)
T KOG1444|consen 301 ATFRKKK 307 (314)
T ss_pred hhhhhcc
Confidence 4444433
No 30
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=4e-11 Score=113.56 Aligned_cols=229 Identities=13% Similarity=0.151 Sum_probs=172.9
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 015117 122 QAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 201 (413)
Q Consensus 122 ~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~ 201 (413)
+..|+..++.+.=++-...||+ .++|++.+-|++-+++..+|+.++++++||+|-+..-..+.++.+.|--+ ..
T Consensus 100 ~t~r~vlplsvVfi~mI~fnnl---cL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l---Gv 173 (347)
T KOG1442|consen 100 ATARQVLPLSVVFILMISFNNL---CLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL---GV 173 (347)
T ss_pred HHHHhhcchhheeeeehhccce---ehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhee---cc
Confidence 3445555555544444444554 89999999999999999999999999999999988777666666666433 12
Q ss_pred CCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc
Q 015117 202 LPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDIL 281 (413)
Q Consensus 202 ~~~~~~~~~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~~~~~ 281 (413)
+.|+. ..+.++.|.++++.++++-++-++|.+|.+-.- ++.+|..+++...++.++.+|.+++....+ +..++-
T Consensus 174 dqE~~---~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v-~~~iw~lt~ynnv~a~lLflpll~lnge~~--~v~~~~ 247 (347)
T KOG1442|consen 174 DQEGS---TGTLSWIGVIFGVLASLAVALNAIYTKKVLPPV-GDCIWRLTAYNNVNALLLFLPLLILNGEFQ--AVVGFP 247 (347)
T ss_pred ccccc---cCccchhhhHHHHHHHHHHHHHHHhhheecccc-cCeehhhHHHHHHHHHHHHHHHHHHcchHH--HHcCcc
Confidence 22322 234567799999999999999999999877654 678999999999999988888765421111 122344
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHH----HhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcc
Q 015117 282 QGHSKATMLLICNNAAQGILSSFFF----KYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 357 (413)
Q Consensus 282 ~g~~~~~~~~il~~aiggl~vs~v~----Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~ 357 (413)
+-+++..|.++.+.++.|..++++. |-.+.++.+...+..-..-.++.+.+++|..+...|-|-.+|+.|...|+.
T Consensus 248 ~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~ 327 (347)
T KOG1442|consen 248 HLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTL 327 (347)
T ss_pred cchHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHH
Confidence 5567788988888899998888775 666777777777777777888899999999999999999999999999987
Q ss_pred cCCcC
Q 015117 358 PLSKV 362 (413)
Q Consensus 358 ~~~~~ 362 (413)
.+...
T Consensus 328 vk~~e 332 (347)
T KOG1442|consen 328 VKEHE 332 (347)
T ss_pred HHHHH
Confidence 54433
No 31
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=98.89 E-value=4.7e-10 Score=105.46 Aligned_cols=213 Identities=15% Similarity=0.225 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 015117 130 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSAL 209 (413)
Q Consensus 130 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~~~~~~~~~ 209 (413)
|.+-|+..+-.|.+.-.|.+|.+....+++-.-.++.+.+++|++||.|+...|..++++...||.++..++...++...
T Consensus 81 Yilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~ag 160 (336)
T KOG2766|consen 81 YILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAG 160 (336)
T ss_pred hhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccC
Confidence 78888888888888889999999999999999999999999999999999999999999999999887666543333222
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHHH
Q 015117 210 GLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATM 289 (413)
Q Consensus 210 ~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~~~~~~g~~~~~~ 289 (413)
|. ....|+.++++++.+.|..++..|.+.|+- +.....-++.++|.+++.+-++ .+.... .--+|++...
T Consensus 161 gs-np~~GD~lvi~GATlYaVSNv~EEflvkn~---d~~elm~~lgLfGaIIsaIQ~i----~~~~~~--~tl~w~~~i~ 230 (336)
T KOG2766|consen 161 GS-NPVKGDFLVIAGATLYAVSNVSEEFLVKNA---DRVELMGFLGLFGAIISAIQFI----FERHHV--STLHWDSAIF 230 (336)
T ss_pred CC-CCccCcEEEEecceeeeeccccHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHh----hhccce--eeEeehHHHH
Confidence 22 123588889999999999999999999963 5556677888999988776533 221110 0122333222
Q ss_pred HHHHHHHH----HHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015117 290 LLICNNAA----QGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 355 (413)
Q Consensus 290 ~~il~~ai----ggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly 355 (413)
..+. .++ .-.++..++|..++..-+...-.+=.++.++ ..||-+.+|...+..+.+..|.++|
T Consensus 231 ~yl~-f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiY 297 (336)
T KOG2766|consen 231 LYLR-FALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIY 297 (336)
T ss_pred HHHH-HHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEe
Confidence 1111 111 1122333444444433333333333455554 6789999999999999999999999
No 32
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.86 E-value=8.9e-08 Score=84.31 Aligned_cols=138 Identities=16% Similarity=0.195 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc----CCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc----cccc-CC--h
Q 015117 217 AYLYTLIFVTVPSLASVFNEYALKSQ----YDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSF----DILQ-GH--S 285 (413)
Q Consensus 217 G~ll~L~a~~~sg~a~Vy~EkllK~~----~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~~----~~~~-g~--~ 285 (413)
|.+++++++++.++..++.|+++|+. .+.+.+....++...+.++.++..+. .++.... .... .. +
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~---~e~~~~~~~~~~~~~~~~~~~ 77 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFL---LEGPQLSSFFSEIFGEELSSD 77 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHH---HhhhhhhhHHHHhhhhhhcch
Confidence 56788999999999999999999983 24555555556666676666655433 2332210 0111 11 2
Q ss_pred hHHHHHHHHHHH----HHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcc
Q 015117 286 KATMLLICNNAA----QGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 357 (413)
Q Consensus 286 ~~~~~~il~~ai----ggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~ 357 (413)
...+..++..++ .+.....++++.++++.+....+..+++.++|+++|||++|...++|+++.+.|.++|++
T Consensus 78 ~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 78 PNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 233333333332 344566788999999999999999999999999999999999999999999999999974
No 33
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.59 E-value=8.3e-07 Score=82.35 Aligned_cols=230 Identities=12% Similarity=0.146 Sum_probs=145.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 015117 128 VLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTS 207 (413)
Q Consensus 128 ~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~~~~~~~ 207 (413)
-++..|+++-++.-+-.--+++|++.+.|.+.+++.++.+|..-++++|.|.+.....+.++..+.-.+....+.+...-
T Consensus 69 K~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~ 148 (309)
T COG5070 69 KKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAF 148 (309)
T ss_pred hhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHH
Confidence 35677777766555555568999999999999999999999999999999999999999988888766654433211100
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCccccccCChh
Q 015117 208 ALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVI-TAMFKGPSSFDILQGHSK 286 (413)
Q Consensus 208 ~~~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~-~~~~~~~~~~~~~~g~~~ 286 (413)
...-.+ .|++++...|+.++..-...+|..|-. +. ......++.-++++|.++. +...++-.+.+.-.+++.
T Consensus 149 -~~~~lN-~GY~Wm~~NclssaafVL~mrkri~lt---Nf--~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~ 221 (309)
T COG5070 149 -KAQILN-PGYLWMFTNCLSSAAFVLIMRKRIKLT---NF--KDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSV 221 (309)
T ss_pred -HhcccC-CceEEEehhhHhHHHHHHHHHHhhccc---cc--chhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCCh
Confidence 000111 278888888887776656666655532 11 1112223444555565443 223333222233444544
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcccCCcC
Q 015117 287 ATMLLICNNAAQGI----LSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKV 362 (413)
Q Consensus 287 ~~~~~il~~aiggl----~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~~~~~~ 362 (413)
-....++..++... +.++..+-.++.+-+...++.-.-.++.|.++||++.+...+..+.+=+.+..+|...++++
T Consensus 222 d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k 301 (309)
T COG5070 222 DSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKK 301 (309)
T ss_pred HHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222222222222 33344444444444455555556788999999999999999999999998888887755544
Q ss_pred CC
Q 015117 363 KD 364 (413)
Q Consensus 363 ~~ 364 (413)
+.
T Consensus 302 ~q 303 (309)
T COG5070 302 QQ 303 (309)
T ss_pred Hh
Confidence 33
No 34
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.55 E-value=2.2e-06 Score=72.24 Aligned_cols=68 Identities=29% Similarity=0.385 Sum_probs=61.5
Q ss_pred HHHH-HHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCC
Q 015117 134 AFLY-AINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSL 202 (413)
Q Consensus 134 Ally-~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~~ 202 (413)
+++. ..++.+.++|+++.| +...++.++.|+++++++++++|||+++++|.++++.++|++++..++.
T Consensus 41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 5544 488999999999999 5888999999999999999999999999999999999999999977653
No 35
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.51 E-value=1e-06 Score=73.85 Aligned_cols=108 Identities=24% Similarity=0.327 Sum_probs=82.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccchhcccchHHHHHHHhhhhhhHHHHHHHH-HHHHHHHHHHH
Q 015117 69 FSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQMPVISFILLQAARNNVLLAVPAFL-YAINNYLKFIM 147 (413)
Q Consensus 69 y~~~tvV~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vpAll-y~~~n~L~f~a 147 (413)
+++...++.+.+...+ .+.+.....+.. .... ..++.....+.+++ ..+.+.+.+.+
T Consensus 17 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~a 74 (126)
T PF00892_consen 17 ISPLSITFWRFLIAGI-LLILLLILGRKP----FKNL-----------------SPRQWLWLLFLGLLGTALAYLLYFYA 74 (126)
T ss_pred CCHHHHHHHHHHHHHH-HHHHHHhhcccc----ccCC-----------------ChhhhhhhhHhhccceehHHHHHHHH
Confidence 6677888888888876 443333322211 0001 11223345666666 58999999999
Q ss_pred HhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q 015117 148 QLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQ 198 (413)
Q Consensus 148 l~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~ 198 (413)
+++++++..+++.++.|+++++++++++||+++++||+++++.++|+.++.
T Consensus 75 ~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 75 LKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998763
No 36
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.48 E-value=1.2e-06 Score=74.67 Aligned_cols=129 Identities=19% Similarity=0.296 Sum_probs=97.4
Q ss_pred HHHHHHhhhhhhheecccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccchhcccchHHHHHHHhhh
Q 015117 46 GDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQMPVISFILLQAAR 125 (413)
Q Consensus 46 ~~~~~~~~~~il~~~s~~~g~~~y~~~tvV~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 125 (413)
.+++.++.-+++-|.--+ .-+|..+-+.+.+.-+.++..+....++.+..++-. .|
T Consensus 10 LsA~fa~L~~iF~KIGl~----~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~--------------------~k 65 (140)
T COG2510 10 LSALFAGLTPIFAKIGLE----GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIG--------------------PK 65 (140)
T ss_pred HHHHHHHHHHHHHHHhcc----ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccC--------------------cc
Confidence 366677777777654222 245666677888888888888777766654332211 22
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q 015117 126 NNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQ 198 (413)
Q Consensus 126 ~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~ 198 (413)
....+.+-++.-.+.-.++|.|++.=+++...=+..+.+++++++++++||||++..||+++++..+|++++.
T Consensus 66 ~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 66 SWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred eehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 2224445555667888899999999999999999999999999999999999999999999999999998764
No 37
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.44 E-value=7.1e-05 Score=71.01 Aligned_cols=203 Identities=15% Similarity=0.033 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 015117 131 AVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALG 210 (413)
Q Consensus 131 ~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~~~~~~~~~~ 210 (413)
.+=++.-...|.++|.+++.+|.++..-+-.+.|+..|++ ..||..-.-|+++.++-++..+...++ .
T Consensus 75 ~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~----~sRr~~d~vwvaLAvlGi~lL~p~~~~--------~ 142 (292)
T COG5006 75 LAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALL----SSRRLRDFVWVALAVLGIWLLLPLGQS--------V 142 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHH----hccchhhHHHHHHHHHHHHhheeccCC--------c
Confidence 3334556688999999999999999999999999988765 457776666777766655544432111 1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHHHH
Q 015117 211 LPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATML 290 (413)
Q Consensus 211 ~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~~~~~~g~~~~~~~ 290 (413)
.+.+..|..+.+.+..||+.+-+..+|.-+.. ...--...-| .++.++.+|.-. .+... .++ ++....
T Consensus 143 ~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~--~g~~g~a~gm-~vAaviv~Pig~----~~ag~--~l~---~p~ll~ 210 (292)
T COG5006 143 WSLDPVGVALALGAGACWALYIVLGQRAGRAE--HGTAGVAVGM-LVAALIVLPIGA----AQAGP--ALF---SPSLLP 210 (292)
T ss_pred CcCCHHHHHHHHHHhHHHHHHHHHcchhcccC--CCchHHHHHH-HHHHHHHhhhhh----hhcch--hhc---ChHHHH
Confidence 12345699999999999999999999987543 2221111222 122232222211 11110 111 121111
Q ss_pred HHHHHHHHHHHHH-----HHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcc
Q 015117 291 LICNNAAQGILSS-----FFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 357 (413)
Q Consensus 291 ~il~~aiggl~vs-----~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~ 357 (413)
.-+..++-+..+- ..++..+.-.-+...++.+.+.++.+++++||.+|..+|+|+++|+.+..-.+.
T Consensus 211 laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 211 LALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTL 282 (292)
T ss_pred HHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccc
Confidence 1122222222222 344555544444555678899999999999999999999999999998764443
No 38
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.37 E-value=9.4e-06 Score=71.34 Aligned_cols=146 Identities=17% Similarity=0.247 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhhhhhhheec-ccC--CcccchhHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccchhcccchHHH
Q 015117 42 ALVVGDCILVGLQPILVFTT-KVD--GGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQMPVISF 118 (413)
Q Consensus 42 l~v~~~~~~~~~~~il~~~s-~~~--g~~~y~~~tvV~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (413)
++...+.+..+.+.++++.. +++ .+...++....+..-..-.++.........+.............+.
T Consensus 3 ~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~-------- 74 (153)
T PF03151_consen 3 ILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEEL-------- 74 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhh--------
Confidence 34445555666665555422 221 2235778888888888887777665443332211000000000000
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 015117 119 ILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN 197 (413)
Q Consensus 119 ~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv 197 (413)
.+..+........+++..+.|...|..+++++|.+++++.+.|.+.+.++++++++|+++..|+.|+++.++|+.+-
T Consensus 75 --~~~~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 75 --SSDPNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 00223345677788889999999999999999999999999999999999999999999999999999999998763
No 39
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.35 E-value=4.1e-06 Score=76.50 Aligned_cols=212 Identities=15% Similarity=0.138 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCc
Q 015117 134 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPV 213 (413)
Q Consensus 134 Ally~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~~~~~~~~~~~~~ 213 (413)
+++.+..|+++-.|+..++|+..+-+..+.-.++-++++..||.|+...+.++.++...|++++.+.+... ..
T Consensus 60 ~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~-------a~ 132 (290)
T KOG4314|consen 60 SIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH-------AD 132 (290)
T ss_pred EEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh-------hh
Confidence 34567889999999999999999999999999999999999999999999999999999999887654211 12
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccc--CCCchHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCccccccCChhHHHH
Q 015117 214 ATGAYLYTLIFVTVPSLASVFNEYALKSQ--YDTSIYHQNLFLYGYGAIFNF-LGIVITAMFKGPSSFDILQGHSKATML 290 (413)
Q Consensus 214 ~~~G~ll~L~a~~~sg~a~Vy~EkllK~~--~~~s~~~~n~~l~~~g~l~~l-~~ll~~~~~~~~~~~~~~~g~~~~~~~ 290 (413)
.+.|+.+.+++++.++++-|.+++..-+- .|.+.+ .--+.++-.++.- |.+++. +.+.+. ++.+....|.
T Consensus 133 e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~F--mS~LGF~NL~~~~~~~lIL~--~T~VE~---~qsFA~~PWG 205 (290)
T KOG4314|consen 133 EIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHF--MSCLGFFNLCFISFPALILA--FTGVEH---LQSFAAAPWG 205 (290)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHH--HHHHHHHHHHHHhhhHHHHH--HhchHH---HHHHhhCCch
Confidence 35688999999999999999988877642 122222 2223333333322 222221 233221 1111112233
Q ss_pred HHHHHHHH----HHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcccC
Q 015117 291 LICNNAAQ----GILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL 359 (413)
Q Consensus 291 ~il~~aig----gl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~~~ 359 (413)
.++-.|.- ...+-+-+-....++.+...-.++...+.+..++=+-..+..++.|..++++|-.+--.|.
T Consensus 206 ~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~ 278 (290)
T KOG4314|consen 206 CLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE 278 (290)
T ss_pred hhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence 32222111 1111111122333444444444555677778777777889999999999999976665543
No 40
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.28 E-value=0.00011 Score=71.29 Aligned_cols=213 Identities=14% Similarity=0.122 Sum_probs=126.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcChHHHHHH-hhhhHHHHHHHHHHHhcCCCCHHHHH----HHHHHHHHHHHhhcCC
Q 015117 127 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVFVIALLLKIIMKRRFSIIQWE----ALALLLIGISVNQLRS 201 (413)
Q Consensus 127 ~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl-~q~k~l~tAlls~llL~~kls~~qw~----al~Ll~~GV~lv~~~~ 201 (413)
.+.-.+-+++..+.+..+|.+.+++..+...=+ ..+.++.++++.+++++|--+..+|. |++++.+|+.+...++
T Consensus 45 ~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~ 124 (269)
T PF06800_consen 45 FIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQD 124 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccc
Confidence 445677788899999999999999887655444 47888999999999999999998887 8888999999987765
Q ss_pred CCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc
Q 015117 202 LPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDIL 281 (413)
Q Consensus 202 ~~~~~~~~~~~~~~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~~~~~ 281 (413)
..++....+ ....-|++..+++.+...++.+..+. .+-++-.-+.-|.+-|.+.+.+++. .... .++
T Consensus 125 ~~~~~~~~~-~~~~kgi~~Ll~stigy~~Y~~~~~~-~~~~~~~~~lPqaiGm~i~a~i~~~--------~~~~---~~~ 191 (269)
T PF06800_consen 125 KKSDKSSSK-SNMKKGILALLISTIGYWIYSVIPKA-FHVSGWSAFLPQAIGMLIGAFIFNL--------FSKK---PFF 191 (269)
T ss_pred ccccccccc-cchhhHHHHHHHHHHHHHHHHHHHHh-cCCChhHhHHHHHHHHHHHHHHHhh--------cccc---ccc
Confidence 433211001 11123666666666666665555443 2221111112222222222222111 1111 223
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-hHHHHHHHHHHHHHHhCCCCcH----HHHHHHHHHHHHHH
Q 015117 282 QGHSKATMLLICNNAAQGILSSFFFKYADTILKKYS-STVATIFTGLASAALFGHTLTM----NFILGISIVFISMH 353 (413)
Q Consensus 282 ~g~~~~~~~~il~~aiggl~vs~v~Ky~~~i~k~~a-~s~~iv~t~lls~~lfg~~lt~----~~~lG~~LVi~gv~ 353 (413)
+..++.-.+.=+.-+++.+..-+..+..+ ...+|. .-++++++.+.++++|+|.=+. ..++|.++++.|..
T Consensus 192 ~k~~~~nil~G~~w~ignl~~~is~~~~G-~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 192 EKKSWKNILTGLIWGIGNLFYLISAQKNG-VATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred ccchHHhhHHHHHHHHHHHHHHHhHHhcc-chhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 33333222222222445544333333322 222332 2268899999999999998664 56789998888754
No 41
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.28 E-value=4.7e-05 Score=75.30 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 015117 128 VLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 200 (413)
Q Consensus 128 ~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~ 200 (413)
|..++ +++.+.+.+.+.|+.+.|.+..+=+....+++.++++..+||||+++++|.+.++..+|..++...
T Consensus 53 W~~G~--~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 53 WWIGL--LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF 123 (300)
T ss_pred HHHHH--HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence 44443 467889999999999999999999999999999999999999999999999999999998876543
No 42
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.18 E-value=2.6e-05 Score=65.27 Aligned_cols=118 Identities=17% Similarity=0.242 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHH-----HHHHHHHHHHHHH
Q 015117 227 VPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKAT-----MLLICNNAAQGIL 301 (413)
Q Consensus 227 ~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~~~~~~g~~~~~-----~~~il~~aiggl~ 301 (413)
++|..+++.++..++. ++...+.+....+.+ .++.... .+... ....+... ...++..+++..+
T Consensus 2 ~~a~~~~~~k~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (126)
T PF00892_consen 2 SWAIYSVFSKKLLKKI---SPLSITFWRFLIAGI-LLILLLI---LGRKP----FKNLSPRQWLWLLFLGLLGTALAYLL 70 (126)
T ss_pred eeeeHHHHHHHHhccC---CHHHHHHHHHHHHHH-HHHHHHh---hcccc----ccCCChhhhhhhhHhhccceehHHHH
Confidence 5788899999998863 444444454444443 2222221 11110 11122211 1222334556667
Q ss_pred HHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015117 302 SSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 355 (413)
Q Consensus 302 vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly 355 (413)
....+|+.+.........+.++++.++++++++|+++...++|+.+++.|+++.
T Consensus 71 ~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 71 YFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 778889998888888899999999999999999999999999999999998764
No 43
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.10 E-value=3.4e-05 Score=65.11 Aligned_cols=68 Identities=12% Similarity=0.130 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q 015117 131 AVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQ 198 (413)
Q Consensus 131 ~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~ 198 (413)
++--++|.+...+.-.+++++|.+....+.++.++.+++++++++|||++.+||+++.+..+|++++.
T Consensus 41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 33346789999999999999999999999999999999999999999999999999999999998874
No 44
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.04 E-value=6e-05 Score=64.42 Aligned_cols=127 Identities=15% Similarity=0.207 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCc--hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHHHHHHHHH
Q 015117 218 YLYTLIFVTVPSLASVFNEYALKSQYDTS--IYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNN 295 (413)
Q Consensus 218 ~ll~L~a~~~sg~a~Vy~EkllK~~~~~s--~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~~~~~~g~~~~~~~~il~~ 295 (413)
..+.+++++++|++.++.+--+++- |.+ -.+|+.-+ +++.....+ ..|+.. .-.+.+...|..+...
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi----~~~l~~v~~----~~g~~~--~~~~~~~k~~lflilS 73 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVI----LIFLLIVLL----VTGNWQ--AGGEIGPKSWLFLILS 73 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHH----HHHHHHHHH----hcCcee--cccccCcceehhhhHH
Confidence 4667889999999887776666643 222 12343332 222222222 233211 0111233444444333
Q ss_pred ----HHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015117 296 ----AAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 355 (413)
Q Consensus 296 ----aiggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly 355 (413)
+++-++-.+.+|..++.........+++++.++|++++||++|..+++|+.++.+|..+.
T Consensus 74 Gla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailv 137 (140)
T COG2510 74 GLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILV 137 (140)
T ss_pred HHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeE
Confidence 333445556667666666667778899999999999999999999999999999997654
No 45
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.97 E-value=0.00021 Score=68.19 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=58.6
Q ss_pred HHHHHHH-HHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 015117 130 LAVPAFL-YAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGIS 195 (413)
Q Consensus 130 ~~vpAll-y~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~ 195 (413)
...-+++ ..+...+.+.++++.++++..++..+.|+++++++++++||+++..||.+..+.++|++
T Consensus 194 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 194 LLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 3334443 56788889999999999999999999999999999999999999999999999999863
No 46
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.93 E-value=0.00012 Score=72.06 Aligned_cols=148 Identities=10% Similarity=0.036 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHhhhhhhheecccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccchhcccchHHH
Q 015117 39 LNVALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQMPVISF 118 (413)
Q Consensus 39 l~vl~v~~~~~~~~~~~il~~~s~~~g~~~y~~~tvV~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (413)
.+.++...+++.|+.+.++.|....+ +++++.+..+.+-....+..+.+........ .. ...+.+.. .
T Consensus 145 ~G~~~~l~a~~~~a~~~v~~k~~~~~--~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~------~~-~~~~~~~~-~-- 212 (302)
T TIGR00817 145 AGFLSAMISNITFVSRNIFSKKAMTI--KSLDKTNLYAYISIMSLFLLSPPAFITEGPP------FL-PHGFMQAI-S-- 212 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCcccHHHHHHHHHHHHHHHHHHHHcchH------HH-HHHHHHhh-c--
Confidence 35566667777788877766532221 1355655555555555444444332211100 00 00000000 0
Q ss_pred HHHHhhhhhhH-HHHHHH-HHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 015117 119 ILLQAARNNVL-LAVPAF-LYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISV 196 (413)
Q Consensus 119 ~~~~~~r~~~~-~~vpAl-ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~l 196 (413)
.......+. ..+.+. .|...|.+.|.+++++++.++++....+|++++++++++++|+++..|+++.++.++|+.+
T Consensus 213 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l 290 (302)
T TIGR00817 213 --GVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFL 290 (302)
T ss_pred --ccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHH
Confidence 000001111 223443 5777788888999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q 015117 197 NQLR 200 (413)
Q Consensus 197 v~~~ 200 (413)
.+..
T Consensus 291 ~~~~ 294 (302)
T TIGR00817 291 YSRV 294 (302)
T ss_pred HHHH
Confidence 8754
No 47
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.92 E-value=0.00021 Score=72.11 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q 015117 130 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQ 198 (413)
Q Consensus 130 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~ 198 (413)
...-++.|.++|.+.|.++++++|.++++...+|++++.++++++++|+++..|++|.++.++|+.+.+
T Consensus 279 i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 279 IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 344577899999999999999999999999999999999999999999999999999999999998864
No 48
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.73 E-value=0.00098 Score=67.59 Aligned_cols=63 Identities=8% Similarity=0.081 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 015117 139 INNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 201 (413)
Q Consensus 139 ~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~ 201 (413)
+...+.+.++++++|+...+...+.|++++++++++|+|+++..|+++.++.++|+.+++.+.
T Consensus 268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGK 330 (358)
T ss_pred HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 345577789999999999999999999999999999999999999999999999999987543
No 49
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.71 E-value=0.0023 Score=55.44 Aligned_cols=119 Identities=16% Similarity=0.150 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHHHHHHHHHH
Q 015117 217 AYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNA 296 (413)
Q Consensus 217 G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~~~~~~g~~~~~~~~il~~a 296 (413)
|++++++++++.+.+.+..++-+++.++.+..... + ..+. .. .+ ...+.+..+...+
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~--~---~~~~----~~-----~~---------p~~~i~lgl~~~~ 59 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDF--I---AALL----AF-----GL---------ALRAVLLGLAGYA 59 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHH--H---HHHH----HH-----hc---------cHHHHHHHHHHHH
Confidence 67888888888888888888877764222211110 0 0000 00 00 0113344444444
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHH--HhCCCCcHHHHHHHHHHHHHHHHhccc
Q 015117 297 AQGILSSFFFKYADTILKKYSSTVATIFTGLASAA--LFGHTLTMNFILGISIVFISMHQFFSP 358 (413)
Q Consensus 297 iggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~--lfg~~lt~~~~lG~~LVi~gv~ly~~~ 358 (413)
+.-.+-.+++|..|........+...++..++++. +|||++|+.+++|+++|+.|+++.+..
T Consensus 60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 44455566777776555555555555666667764 899999999999999999999997763
No 50
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.65 E-value=0.0022 Score=63.03 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 015117 137 YAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 200 (413)
Q Consensus 137 y~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~ 200 (413)
-.++..+++.++++++++..+++..+.|++++++++++++|+++..||++.++.++|++.....
T Consensus 219 t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 219 TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 4467778899999999999999999999999999999999999999999999999999887654
No 51
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.59 E-value=0.0026 Score=62.56 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 015117 135 FLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 200 (413)
Q Consensus 135 lly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~ 200 (413)
+.-.+...+.+.++++++++..+++..+.|++.+++++++++|+++..||++.++.+.|+.+....
T Consensus 223 ~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 223 AAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence 344567788899999999999999999999999999999999999999999999999999887543
No 52
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.57 E-value=0.00099 Score=55.46 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcChHH-HHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Q 015117 128 VLLAVPAFLYAINNYLKFIMQLYFNPAT-VKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQL 199 (413)
Q Consensus 128 ~~~~vpAlly~~~n~L~f~al~~l~~~t-~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~ 199 (413)
+...+-.+.|.+...+.-.+++++|.++ |.+-...-++.|++.+++++||+++..|++++.++.+|++....
T Consensus 31 ~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 31 WPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 3556677788999999999999999865 56777899999999999999999999999999999999988754
No 53
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.56 E-value=0.0029 Score=61.66 Aligned_cols=129 Identities=10% Similarity=-0.018 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHHHHHH----H
Q 015117 218 YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLI----C 293 (413)
Q Consensus 218 ~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~~~~~~g~~~~~~~~i----l 293 (413)
.++.++++++.+...+..|+..+++ +.. + .+....+.++..+... .+... ..+...+...|..+ +
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~---~~~-~-~~~~~~~~~~l~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~ 71 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE---PDF-L-WWALLAHSVLLTPYGL----WYLAQ--VGWSRLPATFWLLLAISAV 71 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch---hHH-H-HHHHHHHHHHHHHHHH----Hhccc--CCCCCcchhhHHHHHHHHH
Confidence 4677888999999999999877753 221 1 2222333333333222 11100 00111111122222 2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcc
Q 015117 294 NNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 357 (413)
Q Consensus 294 ~~aiggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~ 357 (413)
..+....+....+++.+........+..++++.+++++++||+++...++|+++.+.|+.+-..
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 72 ANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 2334444556667888877777778889999999999999999999999999999999876543
No 54
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.54 E-value=0.001 Score=56.96 Aligned_cols=73 Identities=11% Similarity=0.187 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChHHHHHH-hhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 015117 129 LLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 201 (413)
Q Consensus 129 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl-~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~ 201 (413)
...+..++|.+...+...+++++|.+...-+ .....+.+++.+++++||+++..||+++.+.++|++.+...+
T Consensus 32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 4566778899999999999999999776555 579999999999999999999999999999999999886543
No 55
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.52 E-value=0.0014 Score=54.83 Aligned_cols=71 Identities=14% Similarity=0.054 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChHHH-HHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Q 015117 129 LLAVPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQL 199 (413)
Q Consensus 129 ~~~vpAlly~~~n~L~f~al~~l~~~t~-~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~ 199 (413)
...+..++|.+...+...+++.+|.++. .+-.....+.+++.+++++||++++.|++++.+..+|++....
T Consensus 31 ~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 31 PSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 4455577899999999999999998665 5556699999999999999999999999999999999988754
No 56
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.48 E-value=0.0018 Score=54.51 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChHHHHHH-hhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 015117 129 LLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 200 (413)
Q Consensus 129 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl-~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~ 200 (413)
.....-++|.+...+...+++.+|.++..-+ .....+.+++.+++++||+++..|++++.+.++|++.+...
T Consensus 32 ~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 32 PSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3445567889999999999999999776555 56899999999999999999999999999999999998654
No 57
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.44 E-value=0.0018 Score=54.45 Aligned_cols=70 Identities=11% Similarity=0.043 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChHHH-HHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q 015117 129 LLAVPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQ 198 (413)
Q Consensus 129 ~~~vpAlly~~~n~L~f~al~~l~~~t~-~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~ 198 (413)
...+..++|.+...+.-.+++++|.++. .+-.....+.+++.+++++||+++..||+++.+.++|++...
T Consensus 37 ~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 37 YGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 4556677899999999999999998654 666679999999999999999999999999999999998764
No 58
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.44 E-value=0.0036 Score=61.76 Aligned_cols=142 Identities=19% Similarity=0.301 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhhhhhhheecccCCcccchhHHHHHHHHHHHHHHHHHHHHH--HhhcCccccccccccchhcccchHH
Q 015117 40 NVALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLL--QARHKKVGEKSLLSFSTIAQMPVIS 117 (413)
Q Consensus 40 ~vl~v~~~~~~~~~~~il~~~s~~~g~~~y~~~tvV~l~E~~Kl~is~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (413)
+++++..+.+..+.+....+.... +|.-++...++.+.++.+.+....... ...-. +...+
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~--~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~--------~~~~f------- 217 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFK--KYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFR--------SAIRF------- 217 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhh--------HHHHH-------
Confidence 444555555555555555432221 123445788899999999888776655 22111 00011
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 015117 118 FILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN 197 (413)
Q Consensus 118 ~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv 197 (413)
..+.+.......+-++.-++.....|.-.+..++.+..++..++-+.+.+++.++.++++++.||.|+++.+.|..+-
T Consensus 218 --~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~ 295 (303)
T PF08449_consen 218 --ISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLY 295 (303)
T ss_pred --HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHH
Confidence 012222223444555555555566677789999999999999999999999999999999999999999999999886
Q ss_pred hcC
Q 015117 198 QLR 200 (413)
Q Consensus 198 ~~~ 200 (413)
...
T Consensus 296 ~~~ 298 (303)
T PF08449_consen 296 SYA 298 (303)
T ss_pred HHh
Confidence 543
No 59
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.41 E-value=0.0049 Score=60.41 Aligned_cols=64 Identities=19% Similarity=0.202 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 015117 137 YAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 200 (413)
Q Consensus 137 y~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~ 200 (413)
-.+...+.+.+++++++++..++..+.|+++++++++++||+++..||++.++.+.|+.+.+..
T Consensus 223 s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 223 SIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3467788999999999999999999999999999999999999999999999999999887653
No 60
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.40 E-value=0.0012 Score=57.23 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 015117 134 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKI--IMKRRFSIIQWEALALLLIGISVNQLR 200 (413)
Q Consensus 134 Ally~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~l--lL~~kls~~qw~al~Ll~~GV~lv~~~ 200 (413)
-++|.+...+...+++.+|++...-+....+..+++.++. ++||+++..||+++++.++|+.++..+
T Consensus 55 l~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 55 LAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 3468899999999999999999998888887888888885 899999999999999999999998754
No 61
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.38 E-value=0.0031 Score=61.98 Aligned_cols=72 Identities=19% Similarity=0.289 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh-hcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHH----HHHHHHHHHHHHhhc
Q 015117 128 VLLAVPAFLYAINNYLKFIMQL-YFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQW----EALALLLIGISVNQL 199 (413)
Q Consensus 128 ~~~~vpAlly~~~n~L~f~al~-~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw----~al~Ll~~GV~lv~~ 199 (413)
+...+.+++..+++.+++.+.+ ++++++..++.+..|+..++++++++||+.+++|+ ++.++...|+.++..
T Consensus 212 ~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 212 LLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 3455577788899999999999 99999999999999999999999999999999999 999999999888643
No 62
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.38 E-value=0.0069 Score=59.58 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 015117 138 AINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 200 (413)
Q Consensus 138 ~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~ 200 (413)
.+...+.+.+++++++.+..++..+.|++.+++++++++|+++..||++.++.++|+.+...+
T Consensus 226 ~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 226 IVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 356667888999999999999999999999999999999999999999999999999887654
No 63
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.24 E-value=0.011 Score=56.56 Aligned_cols=133 Identities=8% Similarity=0.016 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhH-HHHHH---
Q 015117 217 AYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKA-TMLLI--- 292 (413)
Q Consensus 217 G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~~~~~~g~~~~-~~~~i--- 292 (413)
|.++++++++++|..++..+. ..+ .++.....+=.+++.++.++.+... .+.......+...+.. .+..+
T Consensus 3 g~~~~i~a~~~wg~~~~~~k~-~~~---~~~~~i~~~R~~~a~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYSKL-LKP---LPATDILGHRMIWSFPFMLLSVTLF--RQWAALIERLKRIQKRPLILSLLLC 76 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-hcc---CCHHHHHHHHHHHHHHHHHHHHHHH--cchHHHHHHHhCcccchHHHHHHHH
Confidence 678889999999999999987 332 3444333333444444333222111 0100000001111111 11111
Q ss_pred -HHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015117 293 -CNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 355 (413)
Q Consensus 293 -l~~aiggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly 355 (413)
+..++...+....++|.+........+..|++++++++++++|+++...++|..+.++|+.+-
T Consensus 77 g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li 140 (256)
T TIGR00688 77 GLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN 140 (256)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 122334445556678877777777888999999999999999999999999999999997644
No 64
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.19 E-value=0.013 Score=57.67 Aligned_cols=133 Identities=9% Similarity=0.025 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc--ccccCChhHHH--HH
Q 015117 216 GAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSF--DILQGHSKATM--LL 291 (413)
Q Consensus 216 ~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~~--~~~~g~~~~~~--~~ 291 (413)
.|.++++++++++|..+++.+.. .+ .++.....+-..++.++.++.+.. +++... ..+..+....+ ..
T Consensus 8 ~g~~~~l~a~~~wg~~~~~~k~~-~~---~~~~~~~~~R~~~a~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 79 (296)
T PRK15430 8 QGVLLALAAYFIWGIAPAYFKLI-YY---VPADEILTHRVIWSFFFMVVLMSI----CRQWSYLKTLIQTPQKIFMLAVS 79 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh-cC---CCHHHHHHHHHHHHHHHHHHHHHH----HccHHHHHHHHcCHHHHHHHHHH
Confidence 47888999999999999999654 32 344433334344454433333221 111000 00111111111 11
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhc
Q 015117 292 ICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 356 (413)
Q Consensus 292 il~~aiggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~ 356 (413)
.+..++...+..+.+++.+....+...+..|+++.++++++++|+++..+++|+++.+.|+.+..
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 23334445566667788888888888889999999999999999999999999999999987654
No 65
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.07 E-value=0.0051 Score=51.85 Aligned_cols=61 Identities=8% Similarity=0.086 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhc
Q 015117 296 AAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 356 (413)
Q Consensus 296 aiggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~ 356 (413)
++...+...++|+.+--..-...+++++++.++|+++|||++|..+++|+++++.|+.+-.
T Consensus 48 ~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 48 GLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3344555667777664444444558899999999999999999999999999999987543
No 66
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.06 E-value=0.0081 Score=51.40 Aligned_cols=62 Identities=21% Similarity=0.239 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhhh-hhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcc
Q 015117 296 AAQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 357 (413)
Q Consensus 296 aiggl~vs~v~Ky~~-~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~ 357 (413)
++.-.+.+.++|+.+ ++.-...+.+.++.+.++++++|||++|+..++|+.+++.|+..-+.
T Consensus 41 ~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 41 SLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 444455667777654 33334445678899999999999999999999999999999877654
No 67
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.00 E-value=0.011 Score=49.58 Aligned_cols=60 Identities=23% Similarity=0.248 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcc
Q 015117 297 AQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 357 (413)
Q Consensus 297 iggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~ 357 (413)
.......+..++.+. .......+.++++.++++++|+|+++...++|++++++|+.+-..
T Consensus 47 ~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 47 VAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAW 106 (113)
T ss_pred HHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 444555677788875 555677789999999999999999999999999999999876654
No 68
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.91 E-value=0.013 Score=49.36 Aligned_cols=60 Identities=20% Similarity=0.219 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhh-hhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcc
Q 015117 298 QGILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 357 (413)
Q Consensus 298 ggl~vs~v~Ky~~-~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~ 357 (413)
.-.+.+.++|+.+ ++.-...+.++++.+.++++++|||++|+..++|+++++.|+..-+.
T Consensus 43 sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 43 SFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3345566666654 23333334468899999999999999999999999999999987754
No 69
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.77 E-value=0.023 Score=55.21 Aligned_cols=116 Identities=18% Similarity=0.159 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhhhhhhheecccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccchhcccchHHHHHH
Q 015117 42 ALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQMPVISFILL 121 (413)
Q Consensus 42 l~v~~~~~~~~~~~il~~~s~~~g~~~y~~~tvV~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (413)
+.+..+.+.|..+..+.++... ++.+ .++-|.+.++++..++....+ ++..
T Consensus 141 ~~Ll~stigy~~Y~~~~~~~~~------~~~~-~~lPqaiGm~i~a~i~~~~~~------~~~~---------------- 191 (269)
T PF06800_consen 141 LALLISTIGYWIYSVIPKAFHV------SGWS-AFLPQAIGMLIGAFIFNLFSK------KPFF---------------- 191 (269)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC------ChhH-hHHHHHHHHHHHHHHHhhccc------cccc----------------
Confidence 3344456667666666665433 3333 466788888887766543221 1111
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHH
Q 015117 122 QAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALA 188 (413)
Q Consensus 122 ~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~ 188 (413)
.|..++=.++++++.+.|.+++++.+..-.++.-.+.|+.++..++.+.++|||+=+++++....
T Consensus 192 --~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~ 256 (269)
T PF06800_consen 192 --EKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL 256 (269)
T ss_pred --ccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH
Confidence 12234567899999999999999999999999999999999999999999999999999886544
No 70
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.75 E-value=0.0033 Score=53.14 Aligned_cols=71 Identities=20% Similarity=0.247 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcChHHHHHH-hhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 015117 127 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN 197 (413)
Q Consensus 127 ~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl-~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv 197 (413)
+++|.+|=++|.....++|+.+...|.+...-+ +.+.-++|++.++++.+|..+++.|+++.+.++|+.+.
T Consensus 41 n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 41 NPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 458999999999999999999999998877655 68999999999999989999999999999999998753
No 71
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.012 Score=57.89 Aligned_cols=67 Identities=15% Similarity=0.289 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 015117 135 FLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 201 (413)
Q Consensus 135 lly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~ 201 (413)
+.+.+.+.+.|.|+.+-|++...=+..+.++..|+++..+||||++....++.++.++|-.++....
T Consensus 72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ha 138 (335)
T KOG2922|consen 72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHA 138 (335)
T ss_pred HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEec
Confidence 4577899999999999999999999999999999999999999999999999999999976655443
No 72
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.47 E-value=0.011 Score=48.05 Aligned_cols=61 Identities=11% Similarity=0.252 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcChHHH-HHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 015117 130 LAVPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVFVIALLLKIIMKRRFSIIQWEALALL 190 (413)
Q Consensus 130 ~~vpAlly~~~n~L~f~al~~l~~~t~-~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll 190 (413)
....-.+|.+...+.-.+++++|.++. .+.....++.+++.+.+++||+++..||.++.+.
T Consensus 32 ~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 32 TILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp --HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 334445899999999999999998776 5556799999999999999999999999999863
No 73
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.47 E-value=1.2 Score=45.05 Aligned_cols=104 Identities=12% Similarity=0.025 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChHHHHH-HhhhhHHHHHHHHHHHhcCCC---C----HHHHHHHHHHHHHHHHhhc-
Q 015117 129 LLAVPAFLYAINNYLKFIMQLYFNPATVKM-LSNLKVFVIALLLKIIMKRRF---S----IIQWEALALLLIGISVNQL- 199 (413)
Q Consensus 129 ~~~vpAlly~~~n~L~f~al~~l~~~t~~v-l~q~k~l~tAlls~llL~~kl---s----~~qw~al~Ll~~GV~lv~~- 199 (413)
.-.+-+++..+.|..++.+.+++..+...- -..+..+..+++..++++|=- + ..-..++++..+|+++...
T Consensus 75 ~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 75 PVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 444567788899999999999998766644 446888899999999988532 3 3455677888889998876
Q ss_pred ---CCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 015117 200 ---RSLPEGTSALGLPVATGAYLYTLIFVTVPSLAS 232 (413)
Q Consensus 200 ---~~~~~~~~~~~~~~~~~G~ll~L~a~~~sg~a~ 232 (413)
++..++++..+.....-|+.+.+++.+.+++.+
T Consensus 155 g~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 155 GQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred hhhcccccccccccccchHhHHHHHHHHHHHHHHHH
Confidence 332211100011112247777777777777766
No 74
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.41 E-value=0.0059 Score=60.72 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q 015117 129 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQ 198 (413)
Q Consensus 129 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~ 198 (413)
.+..-++++..+|...|..+.+++|-|+++....|-..+-..+++++++++++.|.++.++.++|+.+-.
T Consensus 237 ~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 237 ILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence 4444559999999999999999999999999999999999999999999999999999999999998864
No 75
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.29 E-value=0.013 Score=55.98 Aligned_cols=58 Identities=22% Similarity=0.263 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 015117 139 INNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISV 196 (413)
Q Consensus 139 ~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~l 196 (413)
+-..|-.++++.+|..+|.++.++.|.+-|+..+++|+|++|..||+++.+..++.+=
T Consensus 222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG 279 (292)
T COG5006 222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAG 279 (292)
T ss_pred cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Confidence 4556778899999999999999999999999999999999999999999998887653
No 76
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.25 E-value=0.23 Score=41.81 Aligned_cols=60 Identities=20% Similarity=0.087 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhhh-hhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015117 296 AAQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 355 (413)
Q Consensus 296 aiggl~vs~v~Ky~~-~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly 355 (413)
++.-.+.+.++|+.+ ++.-...+...++.+.+.++++|||++|+..++|+++++.|+..-
T Consensus 46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 344456667777654 344444556788999999999999999999999999999998764
No 77
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.15 E-value=0.042 Score=54.44 Aligned_cols=115 Identities=12% Similarity=0.076 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHHHHHHHH
Q 015117 215 TGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICN 294 (413)
Q Consensus 215 ~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~~~~~~g~~~~~~~~il~ 294 (413)
.+|.++.++++++.+.+..++||-.++.++.+.... -. + . +.+. ++..|.-++.
T Consensus 6 ~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~-~~----~-----~--------------~~l~--~~~W~~G~~~ 59 (300)
T PF05653_consen 6 YIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG-SG----G-----R--------------SYLR--RPLWWIGLLL 59 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-ch----h-----h--------------HHHh--hHHHHHHHHH
Confidence 468899999999999999999987765422111100 00 0 0 0011 1122222333
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015117 295 NAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 355 (413)
Q Consensus 295 ~aiggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly 355 (413)
.++|.+.-...+.+++..+..+..+++++++++++.++++|+++...++|.++++.|..+-
T Consensus 60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~li 120 (300)
T PF05653_consen 60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLI 120 (300)
T ss_pred HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheee
Confidence 3455554445566788888888888999999999999999999999999999999997543
No 78
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.07 E-value=0.066 Score=44.65 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhh-hhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcc
Q 015117 299 GILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 357 (413)
Q Consensus 299 gl~vs~v~Ky~~-~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~ 357 (413)
-.+.+..+|+.+ ++.-...+...++.+++.++++|||+++...++|+.+++.|+..-+.
T Consensus 44 f~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 44 FYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 345666777754 34444556678899999999999999999999999999999876543
No 79
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.00 E-value=0.081 Score=44.18 Aligned_cols=61 Identities=8% Similarity=0.117 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhhh-hhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhc
Q 015117 296 AAQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 356 (413)
Q Consensus 296 aiggl~vs~v~Ky~~-~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~ 356 (413)
++.-.+.+.++|..+ ++.-...+.+.++.+.++++++|||++|+..++|+.+++.|+..-+
T Consensus 40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 333445566666644 4444455567889999999999999999999999999999987654
No 80
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=95.83 E-value=0.37 Score=48.48 Aligned_cols=62 Identities=13% Similarity=0.173 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcc
Q 015117 296 AAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 357 (413)
Q Consensus 296 aiggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~ 357 (413)
..+..++...++|.+-.......+.+++++.++|+++++++.++.+++|+++.++|+.+-..
T Consensus 90 v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~ 151 (334)
T PF06027_consen 90 VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVV 151 (334)
T ss_pred HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheee
Confidence 34566667778888766667778889999999999999999999999999999999876544
No 81
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=95.74 E-value=0.081 Score=50.48 Aligned_cols=71 Identities=23% Similarity=0.272 Sum_probs=61.7
Q ss_pred HHHHHHHHH-HHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 015117 130 LAVPAFLYA-INNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 200 (413)
Q Consensus 130 ~~vpAlly~-~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~ 200 (413)
....+++-. +...+.+.+++..++.....+..+.|++..++++++++|+.+..||++.++.+.|+.+...+
T Consensus 217 ~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 217 LLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 334444433 57888999999999999999999999999999999999999999999999999999988654
No 82
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=95.47 E-value=0.18 Score=48.67 Aligned_cols=68 Identities=21% Similarity=0.105 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhhh-hhHHHHHhHHHHHHHHHHHHH-HhCCCC-----cHHHHHHHHHHHHHHHHhcccCCcCC
Q 015117 296 AAQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAA-LFGHTL-----TMNFILGISIVFISMHQFFSPLSKVK 363 (413)
Q Consensus 296 aiggl~vs~v~Ky~~-~i~k~~a~s~~iv~t~lls~~-lfg~~l-----t~~~~lG~~LVi~gv~ly~~~~~~~~ 363 (413)
+.|+++.-.++|..+ ++--....+...+.....|-+ +||.+. .+.-.+|++++++|..+|...+.+.+
T Consensus 66 ~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~ 140 (254)
T PF07857_consen 66 ATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEK 140 (254)
T ss_pred hcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCC
Confidence 555555555555443 222223344455555555543 676542 34668999999999998877555553
No 83
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=95.30 E-value=0.14 Score=49.28 Aligned_cols=70 Identities=21% Similarity=0.174 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcccCCcCCCC
Q 015117 296 AAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDE 365 (413)
Q Consensus 296 aiggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~~~~~~~~~ 365 (413)
++.+.+....+++.|+.+-....-..+++|+++++++++.+++..+|++..+.+.|+.+.........+.
T Consensus 28 ~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~ 97 (244)
T PF04142_consen 28 AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDN 97 (244)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccc
Confidence 5566777788899998887777778999999999999999999999999999999998877655554333
No 84
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=94.96 E-value=0.032 Score=52.32 Aligned_cols=68 Identities=10% Similarity=0.087 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 015117 129 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISV 196 (413)
Q Consensus 129 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~l 196 (413)
....+.++.+++..+....+++.|+.+..+...+.++++++++.++++++++..||++..+.+.|+.+
T Consensus 154 ~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 154 AVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 34556677788888999999999999999999999999999999999999999999999999988643
No 85
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=94.81 E-value=1.9 Score=37.63 Aligned_cols=130 Identities=18% Similarity=0.144 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHHHHHHHHHHHH
Q 015117 219 LYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQ 298 (413)
Q Consensus 219 ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~~~~~~g~~~~~~~~il~~aig 298 (413)
++.+++..+.++.+..+-++-|.- .+++.-.+.-+..|.+...+..+. .+++ ....+.+.+||.|.-=+..++.
T Consensus 4 lla~~aG~~i~~q~~~N~~L~~~~--gs~~~as~i~~~~G~i~~~i~~~~---~~~~-~~~~~~~~p~w~~lGG~lG~~~ 77 (138)
T PF04657_consen 4 LLALLAGALIALQAAFNGQLGKAL--GSPLVASFISFGVGFILLLIILLI---TGRP-SLASLSSVPWWAYLGGLLGVFF 77 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHHHHHH---hccc-ccchhccCChHHhccHHHHHHH
Confidence 445555666778888888887753 346665666556666655544332 2222 2122444566666433333333
Q ss_pred HHHHHHHHHhhhhhH-HHHHhHHHHHHHHHHHHH-Hh---CCCCcHHHHHHHHHHHHHHHH
Q 015117 299 GILSSFFFKYADTIL-KKYSSTVATIFTGLASAA-LF---GHTLTMNFILGISIVFISMHQ 354 (413)
Q Consensus 299 gl~vs~v~Ky~~~i~-k~~a~s~~iv~t~lls~~-lf---g~~lt~~~~lG~~LVi~gv~l 354 (413)
-....+.+...+... ......-+++.+.++..+ +| .++++...++|.++++.|+++
T Consensus 78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 233334444443222 222223345556666665 34 368999999999999999864
No 86
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=94.54 E-value=0.1 Score=44.08 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-hhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 015117 289 MLLICNNAAQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQ 354 (413)
Q Consensus 289 ~~~il~~aiggl~vs~v~Ky~~-~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~l 354 (413)
+...+.+-.|.+...+.+..+| ++....+++++.++|++.++++.++..+...++|+++|+.|+.+
T Consensus 45 ~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 45 IIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 3444455556666666666666 44444566899999999999998888999999999999999865
No 87
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=94.50 E-value=0.17 Score=41.09 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=26.4
Q ss_pred HHHHHHHHhhh-hhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 015117 300 ILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIV 348 (413)
Q Consensus 300 l~vs~v~Ky~~-~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LV 348 (413)
.+.+.++|+.+ ++.-...+.++++.+.++|+++|||++|..+++|+.+|
T Consensus 44 ~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 44 YFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 45566667654 22323345578899999999999999999999999876
No 88
>PRK13499 rhamnose-proton symporter; Provisional
Probab=94.05 E-value=0.79 Score=46.28 Aligned_cols=136 Identities=13% Similarity=0.080 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHHHHHH--
Q 015117 215 TGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLI-- 292 (413)
Q Consensus 215 ~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~~~~~~g~~~~~~~~i-- 292 (413)
..|++..+++++|+|--.+-++| .|+- .|. ++|. ..+++..++..+.-....-+.-.+.++..+...+..-
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~w----~wE-~~W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l 78 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-VKKW----SWE-TMWS-VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL 78 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-cCCC----chh-HHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence 35888889999998877777766 4532 122 2344 3333222211111011111111122333444333222
Q ss_pred --HHHHHHHHHHHHHHHhhh-hhHHHHHhHHHHHHHHHHHHHHhCCCC---c----HHHHHHHHHHHHHHHHhcc
Q 015117 293 --CNNAAQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTL---T----MNFILGISIVFISMHQFFS 357 (413)
Q Consensus 293 --l~~aiggl~vs~v~Ky~~-~i~k~~a~s~~iv~t~lls~~lfg~~l---t----~~~~lG~~LVi~gv~ly~~ 357 (413)
+.-++|++.....+|+.+ +..-..++.++.+++.+++.+++||-. + ...++|.+++++|+.+...
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 244778888888999876 444445566788999999999998643 2 3568899999999887655
No 89
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.88 E-value=0.14 Score=48.64 Aligned_cols=71 Identities=17% Similarity=0.296 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 015117 127 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN 197 (413)
Q Consensus 127 ~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv 197 (413)
.|-+...|+.-++...+.|....+..|-+-++...++-++|.+.++++++..++.+||++-.+.+.|...=
T Consensus 241 ~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 241 FWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTAD 311 (337)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhH
Confidence 34566777778888999999999999999999999999999999999999999999999999999987653
No 90
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.64 E-value=0.79 Score=45.14 Aligned_cols=148 Identities=16% Similarity=0.167 Sum_probs=100.0
Q ss_pred cccCCcccchhhHHHHHHHHHHHHHHHhhhhhhheecccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcCccccccc
Q 015117 25 YDRHRHQVSSKTRFLNVALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSL 104 (413)
Q Consensus 25 ~~~~~~~~~~k~~~l~vl~v~~~~~~~~~~~il~~~s~~~g~~~y~~~tvV~l~E~~Kl~is~~~l~~~~~~~~~~~~~~ 104 (413)
+..+|.+-++. ..+.+.-+.-+.+....|.-+.+ +|.-++...++-.++.-.+.+..-++-++.. ++.
T Consensus 163 ~~~g~~ns~~G-~~Ll~~~L~fDgfTn~tQd~lf~------~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~-----~~a 230 (327)
T KOG1581|consen 163 SKSGRENSPIG-ILLLFGYLLFDGFTNATQDSLFK------KYKVSSLHMMFGVNLFSAILNGTYLILQGHL-----LPA 230 (327)
T ss_pred cccCCCCchHh-HHHHHHHHHHHhhHHhHHHHHhc------cCCccHhHHHHHHHHHHHHHHHHhhhcCCCC-----chH
Confidence 44444444443 34444455555556667766655 3345566777888888888777765433321 111
Q ss_pred cccchhc-ccchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHH
Q 015117 105 LSFSTIA-QMPVISFILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQ 183 (413)
Q Consensus 105 ~~~~~~~-~~~~~~~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~q 183 (413)
. .|- +- .+.++| +.+-+.+-++..+..|+-++...+-++.++.-++=+++.+++.++.+++++..|
T Consensus 231 v---~F~~~h-------p~~~~D---i~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q 297 (327)
T KOG1581|consen 231 V---SFIKEH-------PDVAFD---ILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQ 297 (327)
T ss_pred H---HHHHcC-------hhHHHH---HHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhh
Confidence 1 110 00 122333 455566667788888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 015117 184 WEALALLLIGISVN 197 (413)
Q Consensus 184 w~al~Ll~~GV~lv 197 (413)
|.++.+.+.|+..=
T Consensus 298 ~~g~~iVFg~i~l~ 311 (327)
T KOG1581|consen 298 WLGVLIVFGGIFLE 311 (327)
T ss_pred ccCeeeehHHHHHH
Confidence 99999999988663
No 91
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=92.75 E-value=3.4 Score=40.55 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Q 015117 129 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQL 199 (413)
Q Consensus 129 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~ 199 (413)
.+..-+..-++--.++-.|-+.+|.++.-++....|...-+++.++++|+++.-|+.+-+..-+|+++...
T Consensus 213 LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~ 283 (293)
T COG2962 213 LLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI 283 (293)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 33334444455556666788889999999999999999999999999999999999999999999988754
No 92
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=91.47 E-value=0.038 Score=52.63 Aligned_cols=130 Identities=15% Similarity=0.207 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhhhhhhheecccCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccchhcccchHHHHHH
Q 015117 42 ALVVGDCILVGLQPILVFTTKVDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQMPVISFILL 121 (413)
Q Consensus 42 l~v~~~~~~~~~~~il~~~s~~~g~~~y~~~tvV~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (413)
+.-..-++.||+.|... .|.+|+ +|... .=+-+-.+++++.+++...+ ...
T Consensus 5 liaL~P~l~WGsip~v~--~k~GG~-p~qQ~---lGtT~GALifaiiv~~~~~p--------~~T--------------- 55 (288)
T COG4975 5 LIALLPALGWGSIPLVA--NKFGGK-PYQQT---LGTTLGALIFAIIVFLFVSP--------ELT--------------- 55 (288)
T ss_pred HHHHHHHHHhcccceee--eecCCC-hhHhh---hhccHHHHHHHHHHheeecC--------ccc---------------
Confidence 34445567788887654 355555 34432 33444556677766654211 111
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHh-hhhHHHHHHHHHHHhcCCCCHHHH----HHHHHHHHHHHH
Q 015117 122 QAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLS-NLKVFVIALLLKIIMKRRFSIIQW----EALALLLIGISV 196 (413)
Q Consensus 122 ~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~-q~k~l~tAlls~llL~~kls~~qw----~al~Ll~~GV~l 196 (413)
++....-.+-+++..+....+|-+.+++..+...=++ .+..+-+.+++++.++|--+..|. .|++++.+|+.+
T Consensus 56 --~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~l 133 (288)
T COG4975 56 --LTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYL 133 (288)
T ss_pred --hhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheE
Confidence 1122344566777888899999999998776665443 577889999999999999998875 578888889888
Q ss_pred hhcCCC
Q 015117 197 NQLRSL 202 (413)
Q Consensus 197 v~~~~~ 202 (413)
...++.
T Consensus 134 Ts~~~~ 139 (288)
T COG4975 134 TSKQDR 139 (288)
T ss_pred eeeecc
Confidence 766553
No 93
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.62 E-value=12 Score=33.32 Aligned_cols=133 Identities=14% Similarity=0.126 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHHHHHHHHHH
Q 015117 217 AYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNA 296 (413)
Q Consensus 217 G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~~~~~~g~~~~~~~~il~~a 296 (413)
.++..+++..+..+.+..+-++.|.- + ++..-...-+.-|++......+ ..++..........+||.|.-= .
T Consensus 6 ~ll~~i~aG~~l~~Q~~iN~qL~~~~-~-spl~As~isf~vGt~~L~~l~l---~~~~~~~~a~~~~~pwW~~~GG---~ 77 (150)
T COG3238 6 YLLFAILAGALLPLQAAINGRLARYL-G-SPLLASLISFLVGTVLLLILLL---IKQGHPGLAAVASAPWWAWIGG---L 77 (150)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHc-C-ChHHHHHHHHHHHHHHHHHHHH---HhcCCCchhhccCCchHHHHcc---c
Confidence 34555666667778888888887754 2 3433223323334433332222 1333322223344566666432 2
Q ss_pred HHHHHHHHHH----HhhhhhHHHHHhHHHHHHHHHHHHH-HhC---CCCcHHHHHHHHHHHHHHHHhcc
Q 015117 297 AQGILSSFFF----KYADTILKKYSSTVATIFTGLASAA-LFG---HTLTMNFILGISIVFISMHQFFS 357 (413)
Q Consensus 297 iggl~vs~v~----Ky~~~i~k~~a~s~~iv~t~lls~~-lfg---~~lt~~~~lG~~LVi~gv~ly~~ 357 (413)
+|.+++.--+ |.....+.....+-+++.+.++.-+ +|| .+++...++|++++++|+++...
T Consensus 78 lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 78 LGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred hhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 2333332222 2222223333334455556665544 333 57999999999999999776554
No 94
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=89.84 E-value=0.33 Score=46.97 Aligned_cols=73 Identities=18% Similarity=0.183 Sum_probs=51.7
Q ss_pred HHHHHHh---hhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcccCCcCCCCC---CCccccccC
Q 015117 302 SSFFFKY---ADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEP---KNISLESVD 375 (413)
Q Consensus 302 vs~v~Ky---~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~~~~~~~~~~---~~~~~~~~~ 375 (413)
+.+.++| +|+.+ .+..+++++++++|++++|+.|..-.+|..+-+.|+.+-.+|+--=.+.. +..++|.++
T Consensus 114 myya~~~mslaDA~v---ItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~ 190 (346)
T KOG4510|consen 114 MYYALMYMSLADAVV---ITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDI 190 (346)
T ss_pred HHHHHhhcchhheEE---EEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccC
Confidence 3344444 55554 44467999999999999999999999999999999988777654333321 233355555
Q ss_pred CC
Q 015117 376 SP 377 (413)
Q Consensus 376 ~~ 377 (413)
++
T Consensus 191 ~g 192 (346)
T KOG4510|consen 191 PG 192 (346)
T ss_pred Cc
Confidence 55
No 95
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.18 E-value=0.2 Score=49.53 Aligned_cols=69 Identities=12% Similarity=0.103 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 015117 286 KATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQ 354 (413)
Q Consensus 286 ~~~~~~il~~aiggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~l 354 (413)
+..|.-++..++|-+.-...+-+++.++.+...+++++.+++++.++++|.+++.-.+|.++.++|...
T Consensus 65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~ 133 (335)
T KOG2922|consen 65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTT 133 (335)
T ss_pred HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEE
Confidence 555666778888888777778889999999999999999999999999999999999999999998643
No 96
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=81.11 E-value=6.4 Score=37.36 Aligned_cols=69 Identities=12% Similarity=0.077 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 015117 129 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN 197 (413)
Q Consensus 129 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv 197 (413)
.+.+.+++-+.-.++.=+.++-++.+++++...+.=+..|+-..++++++.+.....+++++++..++-
T Consensus 226 am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iY 294 (309)
T COG5070 226 AMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIY 294 (309)
T ss_pred HHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 566777777777777777788899999999999999999999999999999999999999998865553
No 97
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=80.97 E-value=0.84 Score=43.75 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=58.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015117 125 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALAL 189 (413)
Q Consensus 125 r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~L 189 (413)
|..++-.+|++..++.|..++++.+....+|.--++|+.++...+=..++||||=+++||..+..
T Consensus 207 K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~i 271 (288)
T COG4975 207 KYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVII 271 (288)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhh
Confidence 44667899999999999999999999999999999999999999999999999999999876543
No 98
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=77.65 E-value=38 Score=34.17 Aligned_cols=135 Identities=11% Similarity=0.117 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHH--HHHHHHHHHHHHHHHhhcCCCccccccCChhHHHH--
Q 015117 215 TGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLY--GYGAIFNFLGIVITAMFKGPSSFDILQGHSKATML-- 290 (413)
Q Consensus 215 ~~G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~--~~g~l~~l~~ll~~~~~~~~~~~~~~~g~~~~~~~-- 290 (413)
..|+++..++++++|...+=.+|+.+- .| .++|+. +++.++ +|.+ ... ..-|.-.+.+...+..++.
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkvk~W-----sW-Es~Wlv~gi~swli-~P~~-~a~-l~ip~~~~i~~~~~~~~l~~~ 76 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKVKGW-----SW-ESYWLVQGIFSWLI-VPWL-WAL-LAIPDFFSIYSATPASTLFWT 76 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhcCCc-----cH-HHHHHHHHHHHHHH-HHHH-HHH-HhCCcHHHHHHhCChhHHHHH
Confidence 357788888888888777767665321 12 344432 222222 1211 111 1112111233333322222
Q ss_pred --HHHHHHHHHHHHHHHHHhhh-hhHHHHHhHHHHHHHHHHHHHHhC-------CCCcHHHHHHHHHHHHHHHHhccc
Q 015117 291 --LICNNAAQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFG-------HTLTMNFILGISIVFISMHQFFSP 358 (413)
Q Consensus 291 --~il~~aiggl~vs~v~Ky~~-~i~k~~a~s~~iv~t~lls~~lfg-------~~lt~~~~lG~~LVi~gv~ly~~~ 358 (413)
.=++-++||+.-+..+||.+ ++--+.+.-+..++..++--++.| .+-....++|.++.++|+.+....
T Consensus 77 ~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 77 FLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA 154 (344)
T ss_pred HHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence 22345789999999999986 333333333344555555444433 233457799999999998776553
No 99
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=77.22 E-value=3.5 Score=34.34 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcChHHH-HHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 015117 127 NVLLAVPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISV 196 (413)
Q Consensus 127 ~~~~~vpAlly~~~n~L~f~al~~l~~~t~-~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~l 196 (413)
+|.|.+|=+++-....++|.-+++.|.+.. -+.+++...+|+++...+-.|....+-.++..+..+|+.+
T Consensus 52 ~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 52 NWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhh
Confidence 468999999999999999999999887654 5677889999999998875555566666777777777654
No 100
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.94 E-value=61 Score=32.31 Aligned_cols=134 Identities=14% Similarity=0.121 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCch--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCChhHHHHHHHH
Q 015117 217 AYLYTLIFVTVPSLASVFNEYALKSQYDTSI--YHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICN 294 (413)
Q Consensus 217 G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~--~~~n~~l~~~g~l~~l~~ll~~~~~~~~~~~~~~~g~~~~~~~~il~ 294 (413)
.+...+..|++|.+..+.++.++..+ +-|- ...-.|. +.+++. ..+.. .-+--.++.+.--...-|.++-.
T Consensus 13 ~l~sa~~Y~~sS~lm~vvNK~vls~y-~f~~~l~l~~~Q~-l~s~~~---v~~lk--~~~lv~~~~l~~~~~kk~~P~~~ 85 (314)
T KOG1444|consen 13 PLLSALFYCLSSILMTVVNKIVLSSY-NFPMGLLLMLLQS-LASVLV---VLVLK--RLGLVNFRPLDLRTAKKWFPVSL 85 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcC-CCcHHHHHHHHHH-HHHHHH---HHHHH--HhceeecCCcChHHHHHHccHHH
Confidence 35667788888888888899888776 3332 2222343 222211 11110 01110111122122344554433
Q ss_pred HHHHHHHHH-HHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcc
Q 015117 295 NAAQGILSS-FFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 357 (413)
Q Consensus 295 ~aiggl~vs-~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~ 357 (413)
.-.+.++.+ .-+||.+--+-...-..+++++++...++||..++...+....+.++|...+..
T Consensus 86 lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~ 149 (314)
T KOG1444|consen 86 LFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF 149 (314)
T ss_pred HHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcc
Confidence 222333222 445666533444444578899999999999999999999999999988777654
No 101
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=75.17 E-value=45 Score=32.92 Aligned_cols=37 Identities=30% Similarity=0.337 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhc
Q 015117 320 VATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 356 (413)
Q Consensus 320 ~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~ 356 (413)
..++|+.++|..+++++++..+|+|+..|..|+....
T Consensus 121 aviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg 157 (372)
T KOG3912|consen 121 AVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVG 157 (372)
T ss_pred chhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheee
Confidence 4578999999999999999999999999999976543
No 102
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=72.70 E-value=7.5 Score=32.37 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=34.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015117 313 LKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 355 (413)
Q Consensus 313 ~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly 355 (413)
+|..-...++.+=+.+++++++|+++++++.|.++++.++|.-
T Consensus 64 LKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 64 LKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 4555555566666677888999999999999999999998753
No 103
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=69.36 E-value=76 Score=27.57 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHhhcChHHHHHHhh-hhHHHHHHHHHH----HhcCCCCHHHHHHHHHHHHHHHH
Q 015117 133 PAFLYAINNYLKFIMQLYFNPATVKMLSN-LKVFVIALLLKI----IMKRRFSIIQWEALALLLIGISV 196 (413)
Q Consensus 133 pAlly~~~n~L~f~al~~l~~~t~~vl~q-~k~l~tAlls~l----lL~~kls~~qw~al~Ll~~GV~l 196 (413)
.+++=+..-.+..+....+.++...++.- -+++...++-.+ .-++++++.|.+++.+..+|+.+
T Consensus 70 GG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 70 GGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 34443444455555778888777766553 444555555554 35799999999999999999863
No 104
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=66.05 E-value=77 Score=31.19 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=42.5
Q ss_pred cChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 015117 151 FNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 201 (413)
Q Consensus 151 l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~ 201 (413)
..+.+...+...+=..|-++|++++.|+++....-+..+.+.|+.+...+.
T Consensus 284 fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 284 FGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred hchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 456666666666777888999999999999999999999999999877654
No 105
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=65.72 E-value=9.2 Score=31.94 Aligned_cols=68 Identities=16% Similarity=0.144 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015117 288 TMLLICNNAAQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 355 (413)
Q Consensus 288 ~~~~il~~aiggl~vs~v~Ky~~-~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly 355 (413)
-|+..+.+-.|.......+.+++ +....+..+++..++++.+..+-.|...-..++|..+++.|+++.
T Consensus 55 Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 55 YLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 34444444334443344444444 334455677889999999999977777888999999999998764
No 106
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=64.15 E-value=2.3e+02 Score=31.08 Aligned_cols=21 Identities=19% Similarity=0.512 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHHHHHhhcC
Q 015117 180 SIIQWEALALLLIGISVNQLR 200 (413)
Q Consensus 180 s~~qw~al~Ll~~GV~lv~~~ 200 (413)
...+|++++|...|+.++.++
T Consensus 237 ~~lD~IG~~L~~~Gl~LfLlg 257 (599)
T PF06609_consen 237 KELDWIGIFLFIAGLALFLLG 257 (599)
T ss_pred HHhhHHHHHHHHHHHHHHHHH
Confidence 345799999999999887543
No 107
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=59.84 E-value=21 Score=29.76 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=33.7
Q ss_pred HHhhcChHHHHHHhh-hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 015117 147 MQLYFNPATVKMLSN-LKVFVIALLLKIIMKRRFSIIQWEALALLLIGISV 196 (413)
Q Consensus 147 al~~l~~~t~~vl~q-~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~l 196 (413)
+.+..+++--.++.- ..+..-++++++++||++++.+..|-+++..+|..
T Consensus 55 G~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 55 GYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred hccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 333444443333332 22345678999999999999999999988777643
No 108
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=59.02 E-value=35 Score=33.54 Aligned_cols=154 Identities=21% Similarity=0.228 Sum_probs=85.2
Q ss_pred ccccCCcccchhhHHHHHHHHHHHHHHHhhhhhhheecc-cCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcCccccc
Q 015117 24 AYDRHRHQVSSKTRFLNVALVVGDCILVGLQPILVFTTK-VDGGFKFSPVSVNFLTEAVKVFFAIVMLLLQARHKKVGEK 102 (413)
Q Consensus 24 ~~~~~~~~~~~k~~~l~vl~v~~~~~~~~~~~il~~~s~-~~g~~~y~~~tvV~l~E~~Kl~is~~~l~~~~~~~~~~~~ 102 (413)
+-|.+....+.+|..+++.+++-+.+.-+.+++.....+ .-|| ++-+..|.+-++-+-.-+++. +. -...+
T Consensus 149 ~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGK---h~~EalFytH~LsLP~Flf~~----~d-iv~~~ 220 (330)
T KOG1583|consen 149 GLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGK---HWKEALFYTHFLSLPLFLFMG----DD-IVSHW 220 (330)
T ss_pred ccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChHHHHHHHHHhccchHHHhc----ch-HHHHH
Confidence 344444445566666666555555555555666553222 1233 135677777777665443331 10 00000
Q ss_pred cc-cccchhcccchHHHHHHHhhhhhhHHHHHHH-HHHHHHHHH-HHHHhhc-------ChHHHHHHhhhhHHHHHHHHH
Q 015117 103 SL-LSFSTIAQMPVISFILLQAARNNVLLAVPAF-LYAINNYLK-FIMQLYF-------NPATVKMLSNLKVFVIALLLK 172 (413)
Q Consensus 103 ~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~vpAl-ly~~~n~L~-f~al~~l-------~~~t~~vl~q~k~l~tAlls~ 172 (413)
.. .+.+.+ ..| ..-..+|.. .|.+.|.+. |...+.+ ++-|.++...++=.+.-++|.
T Consensus 221 ~~~~~se~~-~~p------------~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~Si 287 (330)
T KOG1583|consen 221 RLAFKSESY-LIP------------LLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSI 287 (330)
T ss_pred HHHhcCcce-ecc------------ccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhhee
Confidence 00 000000 001 111236766 477666654 4444432 344445556666678889999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHhh
Q 015117 173 IIMKRRFSIIQWEALALLLIGISVNQ 198 (413)
Q Consensus 173 llL~~kls~~qw~al~Ll~~GV~lv~ 198 (413)
..++..++++.|++..+.+.|.++..
T Consensus 288 iyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 288 IYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred eEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998864
No 109
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=58.09 E-value=1e+02 Score=30.79 Aligned_cols=74 Identities=24% Similarity=0.382 Sum_probs=66.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 015117 124 ARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN 197 (413)
Q Consensus 124 ~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv 197 (413)
.|.....+.++++-++--..-|.-+..++.-|.++..-.|-+.|-+++..+++.++|..-|+++.+...|+..-
T Consensus 240 ~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 240 LRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 45556788888888888888888899999999999999999999999999999999999999999999999886
No 110
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=56.60 E-value=17 Score=37.14 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=42.8
Q ss_pred HHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcccCCcCCCC
Q 015117 314 KKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDE 365 (413)
Q Consensus 314 k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~~~~~~~~~ 365 (413)
.+...+.+-+|+..++.++-+|++|+..+++..+-+.|+.+.+...++.+++
T Consensus 188 ~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~ 239 (416)
T KOG2765|consen 188 TTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSD 239 (416)
T ss_pred hhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccccc
Confidence 3455667778999999999999999999999999999999888766655444
No 111
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=52.38 E-value=85 Score=31.75 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhc
Q 015117 296 AAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 356 (413)
Q Consensus 296 aiggl~vs~v~Ky~~~i~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~ 356 (413)
++.+-+......+.|+.+-....-+.++.|++++++++++.++..+|...++.++|+-+..
T Consensus 103 alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 103 ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 3334445555677887766666668899999999999999999999999999999988776
No 112
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=51.67 E-value=1.7e+02 Score=30.59 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=14.0
Q ss_pred CcHHHHHHHHHHHHHHHHhcc
Q 015117 337 LTMNFILGISIVFISMHQFFS 357 (413)
Q Consensus 337 lt~~~~lG~~LVi~gv~ly~~ 357 (413)
-+...++|+++.+.++ +|..
T Consensus 283 ~~~~~iig~i~~~~~v-~yss 302 (429)
T PF03348_consen 283 NTWQSIIGLIFTFVSV-LYSS 302 (429)
T ss_pred chHHHHHHHHHHHHHH-HHhc
Confidence 4567789988888885 4443
No 113
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=51.19 E-value=4.1e+02 Score=30.00 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=32.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 015117 154 ATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN 197 (413)
Q Consensus 154 ~t~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv 197 (413)
+-..++..+.|+-.|.++...+.+|.+..-+.+.+-+++|.+.+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 44567888899999999999887776555577777777776654
No 114
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.21 E-value=1.6e+02 Score=24.41 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=34.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhc
Q 015117 313 LKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 356 (413)
Q Consensus 313 ~k~~a~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~ 356 (413)
+|..-..++..+=..+|++.++|++.+..+.|.+++..+++.-.
T Consensus 71 LK~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 71 LKTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 45554445555556789999999999999999999999987654
No 115
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=46.38 E-value=6.6 Score=38.40 Aligned_cols=97 Identities=16% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHhhcChHHHHHHhhhhHHHHHH-HHHHHhcCCC-CHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhHHHHH
Q 015117 144 KFIMQLYFNPATVKMLSNLKVFVIAL-LLKIIMKRRF-SIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYT 221 (413)
Q Consensus 144 ~f~al~~l~~~t~~vl~q~k~l~tAl-ls~llL~~kl-s~~qw~al~Ll~~GV~lv~~~~~~~~~~~~~~~~~~~G~ll~ 221 (413)
+|+-++-++-+...++++..++.+.| +-.+++|||+ -+.-.++++++++-..+..+-.. .+. .-+.|+++.
T Consensus 40 ~~iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tL-tGQ------~LF~Gi~~l 112 (381)
T PF05297_consen 40 FFIIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTL-TGQ------TLFVGIVIL 112 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHh-hcc------HHHHHHHHH
Confidence 45556666666667777766554443 3344446654 44555666666554444332111 010 112355544
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCchHH
Q 015117 222 LIFVTVPSLASVFNEYALKSQYDTSIYH 249 (413)
Q Consensus 222 L~a~~~sg~a~Vy~EkllK~~~~~s~~~ 249 (413)
++++++.=.--.|.+ +++++ ..++|.
T Consensus 113 ~l~~lLaL~vW~Ym~-lLr~~-GAs~Wt 138 (381)
T PF05297_consen 113 FLCCLLALGVWFYMW-LLREL-GASFWT 138 (381)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHH-HHHHh-hhHHHH
Confidence 444443333345655 55555 566664
No 116
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=45.49 E-value=11 Score=23.71 Aligned_cols=13 Identities=46% Similarity=0.795 Sum_probs=7.3
Q ss_pred ccccccccccccc
Q 015117 3 ECSVCHSTLELET 15 (413)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (413)
+|.+|+++++-..
T Consensus 1 ~CP~C~s~l~~~~ 13 (28)
T PF03119_consen 1 TCPVCGSKLVREE 13 (28)
T ss_dssp B-TTT--BEEE-C
T ss_pred CcCCCCCEeEcCC
Confidence 5999999998554
No 117
>PF05077 DUF678: Protein of unknown function (DUF678); InterPro: IPR007769 This family contains poxvirus proteins belonging to the A19 family. The proteins are of unknown function.
Probab=39.05 E-value=10 Score=29.28 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=15.9
Q ss_pred cccccccccccccCCCccccccc
Q 015117 3 ECSVCHSTLELETVGGKTVSRAY 25 (413)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (413)
.||+|+|||+.-+.-.|.-...|
T Consensus 27 tCSsC~SkLV~~Sdvtk~sl~~~ 49 (74)
T PF05077_consen 27 TCSSCQSKLVKFSDVTKVSLDEY 49 (74)
T ss_pred chhhhhhheeeeecccceehhhh
Confidence 59999999998774444433333
No 118
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=37.31 E-value=3.3e+02 Score=28.28 Aligned_cols=76 Identities=20% Similarity=0.287 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHH--hhcCCCCCCCCCCCCC-cchhHHHHHHHHHHHHHHHHHHHHHh
Q 015117 166 VIALLLKIIMKRRFS----IIQWEALALLLIGISV--NQLRSLPEGTSALGLP-VATGAYLYTLIFVTVPSLASVFNEYA 238 (413)
Q Consensus 166 ~tAlls~llL~~kls----~~qw~al~Ll~~GV~l--v~~~~~~~~~~~~~~~-~~~~G~ll~L~a~~~sg~a~Vy~Ekl 238 (413)
+.++...++++||.. ..+==.+.+.++|..+ +..-+...++. .+.+ ......+-+.+++...+++....|++
T Consensus 172 ~aaLa~a~~lG~R~g~~~~~~~pHNl~~~~lGa~lLWfGWfGFN~GSa-l~~~~~a~~a~~nT~lAaa~g~l~w~~~e~~ 250 (409)
T COG0004 172 FAALAAALVLGKRIGGKPVAIPPHNLPLVVLGAALLWFGWFGFNAGSA-LAANGVAALAFVNTNLAAAAGALGWMLIEWL 250 (409)
T ss_pred HHHHHHHHHeecccCCCCCCCCCCchhHHHHHHHHHHHHHccCCccch-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888999998874 2222234444444444 33333332322 1111 11123344566677778889999998
Q ss_pred hccc
Q 015117 239 LKSQ 242 (413)
Q Consensus 239 lK~~ 242 (413)
.+++
T Consensus 251 ~~~K 254 (409)
T COG0004 251 RNGK 254 (409)
T ss_pred HcCC
Confidence 8654
No 119
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=34.97 E-value=5.9e+02 Score=27.20 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 015117 73 SVNFLTEAVKVFFAIVMLLLQA 94 (413)
Q Consensus 73 tvV~l~E~~Kl~is~~~l~~~~ 94 (413)
..+|....+..++++..+...+
T Consensus 169 ~~~f~inalsfl~~i~~l~~~~ 190 (524)
T PF05977_consen 169 AAAFLINALSFLISILALLRWK 190 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 3456666666666655554433
No 120
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=34.51 E-value=35 Score=26.04 Aligned_cols=40 Identities=8% Similarity=-0.029 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhcccCCcCCCC-CCCccccccCCCc
Q 015117 339 MNFILGISIVFISMHQFFSPLSKVKDE-PKNISLESVDSPK 378 (413)
Q Consensus 339 ~~~~lG~~LVi~gv~ly~~~~~~~~~~-~~~~~~~~~~~~~ 378 (413)
-..+++++.+++|..+|.-+..+.... +|+.+.+.++.++
T Consensus 4 d~iLi~ICVaii~lIlY~iYnr~~~~q~~~~~~e~y~~~~~ 44 (68)
T PF05961_consen 4 DFILIIICVAIIGLILYGIYNRKKTTQNTNPSTENYEKMEN 44 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhcCCccc
Confidence 356788999999988887665555443 2222244444444
No 121
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.86 E-value=3e+02 Score=22.84 Aligned_cols=32 Identities=13% Similarity=0.053 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 015117 166 VIALLLKIIMKRRFSIIQWEALALLLIGISVN 197 (413)
Q Consensus 166 ~tAlls~llL~~kls~~qw~al~Ll~~GV~lv 197 (413)
.-+.|+++.|||.+.+.+|.|-.++..|+..+
T Consensus 82 iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 82 IFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 44578999999999999999999988888664
No 122
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=29.77 E-value=3.6e+02 Score=29.03 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=18.1
Q ss_pred HHHHHHHHhhcccCCCchHHHHHHHHHHHHHH
Q 015117 230 LASVFNEYALKSQYDTSIYHQNLFLYGYGAIF 261 (413)
Q Consensus 230 ~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~ 261 (413)
.-++|.+|+.|| .-|+...|+ +.|+.+
T Consensus 59 VDs~y~~~~GRR----KSWiiP~Q~-l~g~~m 85 (544)
T PF13000_consen 59 VDSVYSKRIGRR----KSWIIPIQY-LSGILM 85 (544)
T ss_pred hhhhcccccCCc----chhhhHHHH-HHHHHH
Confidence 346788888775 458888885 444433
No 123
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=29.38 E-value=13 Score=22.85 Aligned_cols=11 Identities=27% Similarity=1.084 Sum_probs=9.6
Q ss_pred Ccccccccccc
Q 015117 1 MIECSVCHSTL 11 (413)
Q Consensus 1 ~~~~~~~~~~~ 11 (413)
+++|++|..++
T Consensus 1 ~v~CPiC~~~v 11 (26)
T smart00734 1 LVQCPVCFREV 11 (26)
T ss_pred CCcCCCCcCcc
Confidence 57999999886
No 124
>PTZ00074 60S ribosomal protein L34; Provisional
Probab=29.26 E-value=42 Score=29.30 Aligned_cols=39 Identities=26% Similarity=0.373 Sum_probs=27.6
Q ss_pred cccccccccccc-----------cCCCcccccccccCCcccchhhHHHHH
Q 015117 3 ECSVCHSTLELE-----------TVGGKTVSRAYDRHRHQVSSKTRFLNV 41 (413)
Q Consensus 3 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~k~~~l~v 41 (413)
.|..|+.+|.-- +...++|+|+|-+..++--.+.+-.-.
T Consensus 43 kC~~cg~~L~GI~~~Rp~e~~rlsK~~KtvsRaYGG~lC~~CVr~rIirA 92 (135)
T PTZ00074 43 KCGDCGKVLAGIKALRPTEYKQLSRRERTVSRAYGGVLCHKCVRDRIVRA 92 (135)
T ss_pred CCCCCCCccCCccCCchHHHHHccccCCCccCCCccchhHHHHHHHHHHH
Confidence 599999987542 345789999999988775555544333
No 125
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=28.16 E-value=31 Score=25.74 Aligned_cols=43 Identities=12% Similarity=0.403 Sum_probs=23.4
Q ss_pred cccccccccccccCC-CcccccccccCCcccc-hhhHHHHHHHHH
Q 015117 3 ECSVCHSTLELETVG-GKTVSRAYDRHRHQVS-SKTRFLNVALVV 45 (413)
Q Consensus 3 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~k~~~l~vl~v~ 45 (413)
.|.+||..+..+..= |+.=.+.|.+.|++.. .+|..++++.++
T Consensus 5 HC~~CG~~Ip~~~~fCS~~C~~~~~k~qk~~~~~~~i~~~~~i~~ 49 (59)
T PF09889_consen 5 HCPVCGKPIPPDESFCSPKCREEYRKRQKRMRKTQYIFFGIFILF 49 (59)
T ss_pred cCCcCCCcCCcchhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999887654311 1233455666655544 444444444443
No 126
>PF01199 Ribosomal_L34e: Ribosomal protein L34e; InterPro: IPR008195 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins belong to the L34e family. These include, vertebrate L34, mosquito L31 [], plant L34 [], yeast putative ribosomal protein YIL052c and archaebacterial L34e.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_i 3IZS_i 4A19_L 4A1D_L 4A18_L 4A1B_L.
Probab=26.74 E-value=35 Score=27.95 Aligned_cols=36 Identities=31% Similarity=0.381 Sum_probs=21.4
Q ss_pred ccccccccccccc-----------cCCCcccccccccCCcccchhhH
Q 015117 2 IECSVCHSTLELE-----------TVGGKTVSRAYDRHRHQVSSKTR 37 (413)
Q Consensus 2 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~k~~ 37 (413)
..|..|+.+|.-- +...|+++|+|-+..++-=.+..
T Consensus 42 pkC~~cg~~L~Gi~~~rp~~~~rl~k~~k~vsRaYGG~lc~~cvr~r 88 (94)
T PF01199_consen 42 PKCGDCGKPLNGIPALRPVELRRLSKRQKTVSRAYGGSLCHKCVRER 88 (94)
T ss_dssp -BSTSSS-BSSSS-SS-SSTTGTS-CHCH--CCTSSSS-HHHHHHHH
T ss_pred CCcCccCCcccccccccHHHHhhcccCCCCCCCCCCccchHHHHHHH
Confidence 3699999987642 22358999999998876544443
No 127
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=26.43 E-value=7.3e+02 Score=25.73 Aligned_cols=24 Identities=13% Similarity=-0.039 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Q 015117 219 LYTLIFVTVPSLASVFNEYALKSQ 242 (413)
Q Consensus 219 ll~L~a~~~sg~a~Vy~EkllK~~ 242 (413)
+=+.+++..++++....+++.+++
T Consensus 244 ~NT~la~a~g~l~~~~~~~~~~gk 267 (404)
T TIGR03644 244 ANTNAAAAGGAIAALLLTKLLFGK 267 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334566667778888888876543
No 128
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=25.96 E-value=7.5e+02 Score=25.55 Aligned_cols=19 Identities=11% Similarity=0.209 Sum_probs=13.1
Q ss_pred ccCcccccccccccccCCC
Q 015117 391 AAGANEDASHRAVNEEKAP 409 (413)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~ 409 (413)
+.++.|||+|.--|.|..|
T Consensus 455 ~~~~~~~~~~~~~~~~~~~ 473 (476)
T PLN00028 455 ASEWTEEEKEKGLHQGSLK 473 (476)
T ss_pred hcccchhhhhccccccccc
Confidence 5577788888766666555
No 129
>PRK04059 rpl34e 50S ribosomal protein L34e; Validated
Probab=25.38 E-value=36 Score=27.52 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=24.1
Q ss_pred cccccccccccc-----------cCCCcccccccccCCcccchh
Q 015117 3 ECSVCHSTLELE-----------TVGGKTVSRAYDRHRHQVSSK 35 (413)
Q Consensus 3 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~k 35 (413)
.|..|+.+|.-- +-..|+|+|+|-+..++-=.|
T Consensus 36 kC~~c~~~L~Gi~~~Rp~~~~rlsK~~K~vsRaYGG~lc~~cvr 79 (88)
T PRK04059 36 KCAICGKPLNGVPRGRPVEIRKLGKTEKRPERPYGGYLCPKCLK 79 (88)
T ss_pred cCCCCCCccCCccCcchHHHHhcccccCCcccCcCceecHHHHH
Confidence 599999988642 235799999999887764333
No 130
>COG2855 Predicted membrane protein [Function unknown]
Probab=23.84 E-value=7.1e+02 Score=25.17 Aligned_cols=71 Identities=14% Similarity=0.116 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCccccccCChhHH
Q 015117 217 AYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGI-VITAMFKGPSSFDILQGHSKAT 288 (413)
Q Consensus 217 G~ll~L~a~~~sg~a~Vy~EkllK~~~~~s~~~~n~~l~~~g~l~~l~~l-l~~~~~~~~~~~~~~~g~~~~~ 288 (413)
..+....+++|.+-|-.-.|-..|.+ +++.-.--.-..++|++..+..- +.+...-++..+|.|.|-+...
T Consensus 124 a~Lia~GssICGasAiaA~~pvika~-~~eva~aIa~V~lfgtia~llyP~l~~~l~l~~~~~GifaG~TvHe 195 (334)
T COG2855 124 ALLIAAGSSICGASAIAATAPVIKAE-EEEVAVAIAVVVLFGTLAMLLYPLLYPLLGLSPEQFGIFAGSTVHE 195 (334)
T ss_pred HHHHHccchhhHHHHHHHhCCcCCCC-ccccceehhhHHHHHHHHHHHHHHHHHHhCCCcchheeeechhHHH
Confidence 34445555667666667777777754 22222222222344554433221 1122222233446666655443
No 131
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=23.20 E-value=39 Score=24.72 Aligned_cols=14 Identities=43% Similarity=0.933 Sum_probs=9.0
Q ss_pred cccccccccccccc
Q 015117 2 IECSVCHSTLELET 15 (413)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (413)
.+|.+|+..+..|.
T Consensus 3 ~~CP~CG~~iev~~ 16 (54)
T TIGR01206 3 FECPDCGAEIELEN 16 (54)
T ss_pred cCCCCCCCEEecCC
Confidence 46777777666654
No 132
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=23.16 E-value=4e+02 Score=28.38 Aligned_cols=21 Identities=14% Similarity=0.331 Sum_probs=15.2
Q ss_pred HhCCCCcHHHHHHHHHHHHHH
Q 015117 332 LFGHTLTMNFILGISIVFISM 352 (413)
Q Consensus 332 lfg~~lt~~~~lG~~LVi~gv 352 (413)
++|.+-.|..+++..++..-+
T Consensus 176 ilGt~~~W~~l~~~~~i~~~~ 196 (485)
T KOG0569|consen 176 LLGTEDLWPYLLAFPLIPALL 196 (485)
T ss_pred hcCCCcchHHHHHHHHHHHHH
Confidence 668888888887777775543
No 133
>PRK14778 lipoprotein signal peptidase; Provisional
Probab=22.47 E-value=6.1e+02 Score=23.33 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=21.5
Q ss_pred HhHHHHHHHHHHHHHH----hCC---------CC------cHHHHHHHHHHHHHHHH
Q 015117 317 SSTVATIFTGLASAAL----FGH---------TL------TMNFILGISIVFISMHQ 354 (413)
Q Consensus 317 a~s~~iv~t~lls~~l----fg~---------~l------t~~~~lG~~LVi~gv~l 354 (413)
..+++.+++..+|-++ +|. -| +..-.+|+++++...+.
T Consensus 80 ~~al~LIlGGAlGNliDRl~~G~VvDFi~~~~~p~iFNvADi~I~iGv~llll~~~~ 136 (186)
T PRK14778 80 RMAMGFILGGALGNLLDRIRFGYVLDFLNLTFLPTIFNLADVFIIVGGALMILGVFR 136 (186)
T ss_pred HHHHHHHHHHHHhhHHHHhhcCceEEEEEeccccceeEHHHHHHHHHHHHHHHHHHh
Confidence 3556677777666552 221 22 34456777777776553
No 134
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.33 E-value=66 Score=31.71 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCccccccccccchhcccchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhcChHH
Q 015117 76 FLTEAVKVFFAIVMLLLQARHKKVGEKSLLSFSTIAQMPVISFILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPAT 155 (413)
Q Consensus 76 ~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t 155 (413)
+.+++..+++.+.++...+.-++.-..+.+ |.+ +-...+.+-++..+.-|+..+.-++..+|-|
T Consensus 220 ~ynnv~a~lLflpll~lnge~~~v~~~~~l--------~a~--------~Fw~~mtLsglfgF~mgyvTg~QIK~TSplT 283 (347)
T KOG1442|consen 220 AYNNVNALLLFLPLLILNGEFQAVVGFPHL--------PAI--------KFWILMTLSGLFGFAMGYVTGWQIKVTSPLT 283 (347)
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHcCcccc--------hHH--------HHHHHHHHHHHHHHHhhheeeEEEEecccce
Confidence 567777777777776654432211111111 111 1112455556666666666666677889999
Q ss_pred HHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 015117 156 VKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISV 196 (413)
Q Consensus 156 ~~vl~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~l 196 (413)
+++-...|-..-.++++.+++|..+...|-+-++...|-..
T Consensus 284 hnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~ 324 (347)
T KOG1442|consen 284 HNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLA 324 (347)
T ss_pred eeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHH
Confidence 99999999999999999999999999999877666665544
No 135
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=21.67 E-value=5.2e+02 Score=22.50 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=33.4
Q ss_pred HHHhhhhhHHHHHhHH-HHHHHHHHHHHHhCCCCc--HHHHHHHHHHHHHHHHhcccCCcCC
Q 015117 305 FFKYADTILKKYSSTV-ATIFTGLASAALFGHTLT--MNFILGISIVFISMHQFFSPLSKVK 363 (413)
Q Consensus 305 v~Ky~~~i~k~~a~s~-~iv~t~lls~~lfg~~lt--~~~~lG~~LVi~gv~ly~~~~~~~~ 363 (413)
++...+|...+.+... +-+..++.+..+.+...+ +..++.++++-.+=|.++.+..+..
T Consensus 52 ILPr~gN~~AtiaD~~La~~~iW~~~~~~~~~~~~~~~~allsA~~i~v~E~fFH~yl~~~~ 113 (136)
T PF10710_consen 52 ILPRTGNIVATIADFGLAFLVIWLMGYILTGNYVSIAWAALLSAVLIGVGEYFFHRYLLRNV 113 (136)
T ss_pred eeeCCCChhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4455677776666643 445566677777774443 3344445555556566666544443
No 136
>PHA02893 hypothetical protein; Provisional
Probab=20.45 E-value=32 Score=27.35 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=13.0
Q ss_pred cccccccccccccCCCc
Q 015117 3 ECSVCHSTLELETVGGK 19 (413)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (413)
.||.|+|||+.-+.-.|
T Consensus 36 TCSsC~SKLV~~Sdvtk 52 (88)
T PHA02893 36 TCQICQSKLVMFSGVNK 52 (88)
T ss_pred chhhhhcceeeeeccch
Confidence 59999999998773333
No 137
>PHA03049 IMV membrane protein; Provisional
Probab=20.09 E-value=89 Score=23.82 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhcccCCcCCC
Q 015117 339 MNFILGISIVFISMHQFFSPLSKVKD 364 (413)
Q Consensus 339 ~~~~lG~~LVi~gv~ly~~~~~~~~~ 364 (413)
-..+++++.+++|..+|.-+..+...
T Consensus 4 d~~l~iICVaIi~lIvYgiYnkk~~~ 29 (68)
T PHA03049 4 DIILVIICVVIIGLIVYGIYNKKTTT 29 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34677888888898877665544433
Done!