Query 015117
Match_columns 413
No_of_seqs 230 out of 1171
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 06:59:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.3 1E-06 3.6E-11 75.9 6.1 85 293-378 38-123 (137)
2 3b5d_A Multidrug transporter E 98.2 1.4E-05 4.8E-10 66.1 10.8 71 130-200 33-104 (110)
3 2i68_A Protein EMRE; transmemb 98.0 8.2E-06 2.8E-10 70.2 6.2 71 131-201 34-105 (137)
4 3b5d_A Multidrug transporter E 97.6 0.00048 1.6E-08 56.8 10.4 63 296-358 41-104 (110)
5 3b9w_A Ammonium transporter fa 68.9 24 0.00081 35.2 10.0 72 166-239 151-229 (407)
6 3u5e_g 60S ribosomal protein L 36.9 21 0.0007 29.4 2.7 40 3-42 43-93 (121)
7 3iz5_i 60S ribosomal protein L 32.8 25 0.00085 28.8 2.6 41 3-43 43-96 (119)
8 1rwj_A Cytochrome C family pro 19.7 39 0.0013 25.6 1.4 12 2-13 30-41 (82)
9 4a18_L RPL34; ribosome, eukary 17.0 73 0.0025 26.2 2.4 40 3-42 43-95 (123)
10 3j21_d 50S ribosomal protein L 14.3 58 0.002 25.2 1.1 30 3-33 35-75 (89)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.26 E-value=1e-06 Score=75.87 Aligned_cols=85 Identities=16% Similarity=0.103 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHH-hHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcccCCcCCCCCCCccc
Q 015117 293 CNNAAQGILSSFFFKYADTILKKYS-STVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEPKNISL 371 (413)
Q Consensus 293 l~~aiggl~vs~v~Ky~~~i~k~~a-~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~~~~~~~~~~~~~~~ 371 (413)
+..++.-.+....+|+.+....... ..+.++++.++++++|||++|+.+++|+++|+.|+++.+......+ .++...+
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~~~~-~~~~~~v 116 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSRSTP-HEFEAYV 116 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCC-CCcccch
Confidence 3344455566677888775544444 7899999999999999999999999999999999998876432222 2355667
Q ss_pred cccCCCc
Q 015117 372 ESVDSPK 378 (413)
Q Consensus 372 ~~~~~~~ 378 (413)
|++|..|
T Consensus 117 ~~~~~~~ 123 (137)
T 2i68_A 117 EQKLISE 123 (137)
T ss_dssp -------
T ss_pred hhhhcCH
Confidence 7766654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.17 E-value=1.4e-05 Score=66.11 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcChHHHHHH-hhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 015117 130 LAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 200 (413)
Q Consensus 130 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl-~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~ 200 (413)
...-.++|.+...+...+++++|.+....+ ..+.|+.+++++++++||++++.||+++.+..+|+.++...
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 344556788999999999999999998777 89999999999999999999999999999999999998654
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.99 E-value=8.2e-06 Score=70.24 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcChHHHHHH-hhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 015117 131 AVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 201 (413)
Q Consensus 131 ~vpAlly~~~n~L~f~al~~l~~~t~~vl-~q~k~l~tAlls~llL~~kls~~qw~al~Ll~~GV~lv~~~~ 201 (413)
.+-.++|.+...+.+.+++++|++....+ ..+.|+++++++++++||++++.||+++++.++|+.++...+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34456788999999999999999977777 899999999999999999999999999999999999987543
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.58 E-value=0.00048 Score=56.76 Aligned_cols=63 Identities=21% Similarity=0.205 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHH-hHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccc
Q 015117 296 AAQGILSSFFFKYADTILKKYS-STVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP 358 (413)
Q Consensus 296 aiggl~vs~v~Ky~~~i~k~~a-~s~~iv~t~lls~~lfg~~lt~~~~lG~~LVi~gv~ly~~~ 358 (413)
++.-.+....+|+.+.-..... ..++++++.++++++|||++|..+++|+++++.|+++.+..
T Consensus 41 ~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3344556677888775544333 67899999999999999999999999999999999887653
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=68.88 E-value=24 Score=35.17 Aligned_cols=72 Identities=14% Similarity=0.042 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCCCH-----HHHHHHHHHHHHHHHh--hcCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 015117 166 VIALLLKIIMKRRFSI-----IQWEALALLLIGISVN--QLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYA 238 (413)
Q Consensus 166 ~tAlls~llL~~kls~-----~qw~al~Ll~~GV~lv--~~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sg~a~Vy~Ekl 238 (413)
..++...++|+||... .+--.+.+.++|..+. ...+...+ ...+ .......+=+.+++..++++....+++
T Consensus 151 ~~aLa~a~~LG~R~~~~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~G-l~~~-~~~~~a~~NT~lAaaag~l~~~~~~~~ 228 (407)
T 3b9w_A 151 YFGLGVSIALTTAAQRAQPIESDATSDRFSMLGSMVLWLFWPSFATA-IVPF-EQMPQTIVNTLLALCGATLATYFLSAL 228 (407)
T ss_dssp HHHHHHHHHHCCHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHT-TSCG-GGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCCCCcCCCCCHHHHHHHHHHHHHHHHhhhhh-hccc-hhhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5677778888876422 1233445555555443 11111111 0000 111122334456666677777777776
Q ss_pred h
Q 015117 239 L 239 (413)
Q Consensus 239 l 239 (413)
.
T Consensus 229 ~ 229 (407)
T 3b9w_A 229 F 229 (407)
T ss_dssp H
T ss_pred H
Confidence 3
No 6
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i
Probab=36.89 E-value=21 Score=29.41 Aligned_cols=40 Identities=35% Similarity=0.474 Sum_probs=27.8
Q ss_pred ccccccccccc-c----------cCCCcccccccccCCcccchhhHHHHHH
Q 015117 3 ECSVCHSTLEL-E----------TVGGKTVSRAYDRHRHQVSSKTRFLNVA 42 (413)
Q Consensus 3 ~~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~k~~~l~vl 42 (413)
.|.+|+.+|.- | +...|+|+|+|-+.+++-=.+-+-.-.+
T Consensus 43 kCg~Cg~~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CVr~RI~rAF 93 (121)
T 3u5e_g 43 KCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVKERIIRAF 93 (121)
T ss_dssp BCTTTCCBCTTCCCCCGGGGGSSCGGGSCCSSTTTTTSCSHHHHHHHHHHH
T ss_pred CCCCCCCccCCccCCcHHHHHhcccCCCCcccCCcccchHHHHHHHHHHHH
Confidence 59999988754 1 2234799999999998866555544333
No 7
>3iz5_i 60S ribosomal protein L34 (L34E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_i
Probab=32.83 E-value=25 Score=28.83 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=28.8
Q ss_pred ccccccccccc-c------------cCCCcccccccccCCcccchhhHHHHHHH
Q 015117 3 ECSVCHSTLEL-E------------TVGGKTVSRAYDRHRHQVSSKTRFLNVAL 43 (413)
Q Consensus 3 ~~~~~~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~k~~~l~vl~ 43 (413)
.|.+|+.+|.- | +.+.|+++|+|-+.+++-=.+-+..-.++
T Consensus 43 kC~~cg~~L~GI~~~Rp~e~~~~rlsK~~KtvsRaYGG~lC~~CVr~rI~rAFL 96 (119)
T 3iz5_i 43 KCPVTGKKIQGIPHLRPTEYKRPRLSRNRRTVNRPYGGVLSGPAVRERIIRAFL 96 (119)
T ss_dssp CSTTSSCCSSSCCSSCSSTTCCCCCCSCCCCCBCCSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCccCCCchhhhhhhccccCCCcccCCCccchHHHHHHHHHHHHH
Confidence 49999987753 1 23357999999999988766666544443
No 8
>1rwj_A Cytochrome C family protein; multiheme cytochrome C, geobacter metallireducens, heme coordination in C-type cytochromes; HET: HEM; 1.70A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=19.67 E-value=39 Score=25.56 Aligned_cols=12 Identities=33% Similarity=0.805 Sum_probs=9.6
Q ss_pred cccccccccccc
Q 015117 2 IECSVCHSTLEL 13 (413)
Q Consensus 2 ~~~~~~~~~~~~ 13 (413)
.+|++||.++-.
T Consensus 30 ~~C~~CH~~~f~ 41 (82)
T 1rwj_A 30 YKCNECHTKLFA 41 (82)
T ss_dssp CCGGGTBTTTBC
T ss_pred CChhhccccccc
Confidence 489999999743
No 9
>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4
Probab=17.00 E-value=73 Score=26.19 Aligned_cols=40 Identities=25% Similarity=0.335 Sum_probs=26.4
Q ss_pred cccccc--cccccc-----------cCCCcccccccccCCcccchhhHHHHHH
Q 015117 3 ECSVCH--STLELE-----------TVGGKTVSRAYDRHRHQVSSKTRFLNVA 42 (413)
Q Consensus 3 ~~~~~~--~~~~~~-----------~~~~~~~~~~~~~~~~~~~~k~~~l~vl 42 (413)
.|.+|+ .+|.-- +...|+|+|+|-+.+++-=.+-+-.-.+
T Consensus 43 kCg~cg~~~~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CVr~RI~rAF 95 (123)
T 4a18_L 43 KCSEAGCNVALNGIAQVRPAEYATIARSAKTVSRVYGGELCHTCVRSRIIRAF 95 (123)
T ss_dssp BCCSTTTCCBCSSSCCCCTTGGGTSCHHHHCCSSTTSSSCCHHHHHHHHHHHH
T ss_pred cCCCCCCccccCCcCCCcHHHHHhccccCCCcccCCCccchHHHHHHHHHHHH
Confidence 599999 665321 1223799999999998766655544433
No 10
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=14.30 E-value=58 Score=25.23 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=20.2
Q ss_pred ccccccccccccc-----------CCCcccccccccCCcccc
Q 015117 3 ECSVCHSTLELET-----------VGGKTVSRAYDRHRHQVS 33 (413)
Q Consensus 3 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 33 (413)
.|.+|+.+|.--. ...|+|+|+|- .+++-=
T Consensus 35 kC~~cg~~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~C 75 (89)
T 3j21_d 35 HCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRC 75 (89)
T ss_dssp BCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHH
T ss_pred CCCCCCCccCCccCccHHHHHhcccCCCCcCCCcc-cchHHH
Confidence 5999998875322 11268999998 776543
Done!