Query 015118
Match_columns 413
No_of_seqs 114 out of 581
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:17:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015118.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015118hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02620 indole-3-acetic acid- 100.0 2E-101 5E-106 807.1 27.0 400 10-412 21-431 (612)
2 PLN02247 indole-3-acetic acid- 100.0 5.6E-99 1E-103 790.8 27.9 408 1-412 1-425 (606)
3 PLN02249 indole-3-acetic acid- 100.0 3.7E-93 8E-98 752.2 27.6 396 9-412 19-418 (597)
4 PF03321 GH3: GH3 auxin-respon 100.0 3.5E-93 7.6E-98 749.5 16.9 370 13-412 2-379 (528)
5 COG1541 PaaK Coenzyme F390 syn 99.7 3.3E-17 7.2E-22 166.7 13.6 274 21-412 20-312 (438)
6 TIGR03335 F390_ftsA coenzyme F 99.7 6.2E-17 1.4E-21 168.0 11.8 93 22-118 12-113 (445)
7 TIGR02304 aden_form_hyp probab 99.6 1.5E-15 3.3E-20 156.6 13.0 261 20-412 20-305 (430)
8 TIGR02155 PA_CoA_ligase phenyl 99.6 6.2E-15 1.3E-19 151.4 14.6 89 22-118 6-102 (422)
9 PRK06334 long chain fatty acid 97.9 0.00019 4.1E-09 76.2 14.0 28 90-118 183-210 (539)
10 PRK09274 peptide synthase; Pro 97.8 0.00026 5.7E-09 74.9 13.9 29 89-118 173-201 (552)
11 PF00501 AMP-binding: AMP-bind 97.8 0.00011 2.3E-09 74.6 10.3 102 292-412 276-398 (417)
12 PRK06187 long-chain-fatty-acid 97.8 0.00032 7E-09 72.9 14.0 30 89-119 166-195 (521)
13 PRK07514 malonyl-CoA synthase; 97.8 0.00028 6E-09 73.5 12.9 29 90-119 156-184 (504)
14 PRK04813 D-alanine--poly(phosp 97.8 0.0003 6.5E-09 73.0 13.0 56 62-118 115-170 (503)
15 TIGR01733 AA-adenyl-dom amino 97.7 0.00071 1.5E-08 68.1 13.8 29 90-119 120-148 (408)
16 PRK09088 acyl-CoA synthetase; 97.7 0.00033 7.2E-09 72.7 11.6 27 90-117 135-161 (488)
17 PRK07788 acyl-CoA synthetase; 97.6 0.00037 8.1E-09 73.8 11.8 26 91-117 208-233 (549)
18 PRK07529 AMP-binding domain pr 97.6 0.00047 1E-08 74.7 12.7 27 89-116 212-238 (632)
19 PRK13295 cyclohexanecarboxylat 97.6 0.00085 1.8E-08 71.1 14.2 27 90-117 197-223 (547)
20 PRK06155 crotonobetaine/carnit 97.6 0.00064 1.4E-08 72.1 12.9 27 90-117 180-206 (542)
21 PRK06145 acyl-CoA synthetase; 97.6 0.00022 4.7E-09 74.3 8.9 29 88-117 147-175 (497)
22 PLN02574 4-coumarate--CoA liga 97.6 0.001 2.2E-08 70.9 13.6 29 88-117 196-224 (560)
23 PRK06164 acyl-CoA synthetase; 97.6 0.0014 3E-08 69.1 14.4 29 90-119 181-209 (540)
24 PLN02860 o-succinylbenzoate-Co 97.5 0.0013 2.8E-08 70.0 14.0 28 89-117 171-198 (563)
25 PRK08316 acyl-CoA synthetase; 97.5 0.0015 3.3E-08 68.0 14.0 29 88-117 169-197 (523)
26 PRK07638 acyl-CoA synthetase; 97.5 0.002 4.3E-08 67.0 14.6 93 300-412 258-371 (487)
27 PRK04319 acetyl-CoA synthetase 97.5 0.0015 3.2E-08 69.7 13.6 27 90-117 205-231 (570)
28 PRK08633 2-acyl-glycerophospho 97.5 0.00093 2E-08 76.9 12.7 29 89-118 781-809 (1146)
29 TIGR03205 pimA dicarboxylate-- 97.5 0.0019 4E-08 68.3 13.9 28 89-117 191-218 (541)
30 PRK06060 acyl-CoA synthetase; 97.5 0.0007 1.5E-08 74.3 11.0 97 293-412 260-375 (705)
31 PRK07656 long-chain-fatty-acid 97.4 0.0012 2.6E-08 68.7 12.1 31 87-118 163-193 (513)
32 PRK05852 acyl-CoA synthetase; 97.4 0.0019 4.1E-08 68.1 13.5 25 93-118 179-203 (534)
33 PRK05677 long-chain-fatty-acid 97.4 0.00072 1.6E-08 71.9 10.4 28 89-117 206-233 (562)
34 PRK00174 acetyl-CoA synthetase 97.4 0.001 2.2E-08 72.0 11.5 26 90-116 245-270 (637)
35 PRK10946 entE enterobactin syn 97.4 0.0033 7.2E-08 66.5 14.9 30 89-119 181-210 (536)
36 PRK06839 acyl-CoA synthetase; 97.4 0.0022 4.7E-08 66.6 13.2 26 90-116 149-174 (496)
37 PRK07786 long-chain-fatty-acid 97.4 0.001 2.2E-08 70.4 10.5 93 300-412 294-409 (542)
38 PRK05605 long-chain-fatty-acid 97.3 0.0016 3.6E-08 69.2 11.9 28 89-117 218-245 (573)
39 TIGR01734 D-ala-DACP-lig D-ala 97.3 0.003 6.4E-08 65.7 13.6 28 90-118 141-168 (502)
40 PRK08180 feruloyl-CoA synthase 97.3 0.0018 3.8E-08 70.0 12.1 29 89-118 208-236 (614)
41 PRK08314 long-chain-fatty-acid 97.3 0.0035 7.7E-08 66.0 13.7 28 90-118 190-217 (546)
42 TIGR03208 cyc_hxne_CoA_lg cycl 97.3 0.0023 4.9E-08 67.6 12.1 28 89-117 194-221 (538)
43 PRK10252 entF enterobactin syn 97.3 0.0012 2.5E-08 77.2 10.5 29 89-118 597-625 (1296)
44 PTZ00237 acetyl-CoA synthetase 97.3 0.0019 4.1E-08 70.4 11.4 24 91-115 255-278 (647)
45 TIGR02188 Ac_CoA_lig_AcsA acet 97.3 0.0022 4.7E-08 69.3 11.6 25 91-116 237-261 (625)
46 PRK12467 peptide synthase; Pro 97.2 0.002 4.2E-08 83.4 12.9 33 88-121 654-686 (3956)
47 PRK08279 long-chain-acyl-CoA s 97.2 0.0023 5.1E-08 68.6 11.7 29 90-119 199-227 (600)
48 PRK12583 acyl-CoA synthetase; 97.2 0.0038 8.2E-08 65.9 12.9 28 90-118 201-228 (558)
49 PRK10524 prpE propionyl-CoA sy 97.2 0.0026 5.6E-08 68.7 11.8 26 90-116 233-258 (629)
50 PRK07867 acyl-CoA synthetase; 97.2 0.0032 6.9E-08 66.7 12.0 27 90-117 152-178 (529)
51 PRK07787 acyl-CoA synthetase; 97.2 0.005 1.1E-07 63.9 13.2 28 91-119 129-156 (471)
52 TIGR03098 ligase_PEP_1 acyl-Co 97.2 0.0041 8.8E-08 64.8 12.4 27 91-118 162-188 (515)
53 PLN02736 long-chain acyl-CoA s 97.2 0.0016 3.6E-08 70.8 9.6 28 89-117 220-247 (651)
54 COG1022 FAA1 Long-chain acyl-C 97.2 0.0055 1.2E-07 66.3 13.3 243 89-411 190-458 (613)
55 PRK13382 acyl-CoA synthetase; 97.1 0.0022 4.7E-08 67.9 10.2 24 92-116 198-221 (537)
56 COG0365 Acs Acyl-coenzyme A sy 97.1 0.0031 6.7E-08 67.2 11.1 26 88-115 170-195 (528)
57 PRK07059 Long-chain-fatty-acid 97.1 0.0028 6E-08 67.3 10.7 27 89-116 203-229 (557)
58 TIGR02316 propion_prpE propion 97.1 0.0061 1.3E-07 66.0 13.4 27 89-116 231-257 (628)
59 PLN02330 4-coumarate--CoA liga 97.1 0.0047 1E-07 65.4 11.9 27 90-117 184-210 (546)
60 PLN02861 long-chain-fatty-acid 97.1 0.0016 3.4E-08 71.2 8.3 28 89-117 219-246 (660)
61 TIGR03443 alpha_am_amid L-amin 97.1 0.0033 7.1E-08 74.2 11.5 30 89-119 414-443 (1389)
62 PLN02614 long-chain acyl-CoA s 97.0 0.0015 3.3E-08 71.5 8.0 29 89-118 222-250 (666)
63 TIGR02275 DHB_AMP_lig 2,3-dihy 97.0 0.011 2.3E-07 62.4 13.9 29 89-118 182-210 (527)
64 PRK08974 long-chain-fatty-acid 97.0 0.0075 1.6E-07 64.0 12.6 29 89-118 205-233 (560)
65 PRK13388 acyl-CoA synthetase; 97.0 0.008 1.7E-07 63.7 12.8 29 88-117 148-176 (540)
66 PRK12582 acyl-CoA synthetase; 97.0 0.0079 1.7E-07 65.1 12.9 28 90-118 220-247 (624)
67 PRK07470 acyl-CoA synthetase; 97.0 0.0024 5.3E-08 67.1 8.7 28 89-117 162-189 (528)
68 PRK06710 long-chain-fatty-acid 97.0 0.0071 1.5E-07 64.2 11.9 26 91-117 207-232 (563)
69 PRK12467 peptide synthase; Pro 96.9 0.0051 1.1E-07 79.6 12.5 31 88-119 1716-1746(3956)
70 PRK08751 putative long-chain f 96.9 0.0056 1.2E-07 64.9 11.0 28 90-118 208-235 (560)
71 PRK08315 AMP-binding domain pr 96.9 0.0086 1.9E-07 63.3 12.3 27 90-117 199-225 (559)
72 PRK12316 peptide synthase; Pro 96.9 0.007 1.5E-07 80.0 13.8 31 88-119 653-683 (5163)
73 TIGR01923 menE O-succinylbenzo 96.9 0.011 2.4E-07 60.2 12.4 29 89-118 110-138 (436)
74 PRK05857 acyl-CoA synthetase; 96.9 0.0043 9.4E-08 65.7 9.4 27 89-116 168-194 (540)
75 COG0318 CaiC Acyl-CoA syntheta 96.8 0.0074 1.6E-07 64.3 10.9 36 294-333 292-330 (534)
76 PRK12316 peptide synthase; Pro 96.8 0.0041 8.9E-08 82.1 10.5 31 89-120 3195-3225(5163)
77 PRK08308 acyl-CoA synthetase; 96.8 0.012 2.6E-07 60.0 11.6 27 91-118 102-128 (414)
78 PRK12492 long-chain-fatty-acid 96.8 0.016 3.5E-07 61.6 12.8 26 91-117 208-233 (562)
79 TIGR02262 benz_CoA_lig benzoat 96.7 0.01 2.2E-07 62.0 10.9 29 89-118 160-188 (508)
80 PRK03640 O-succinylbenzoic aci 96.7 0.017 3.6E-07 59.8 12.2 26 90-116 141-166 (483)
81 PLN02387 long-chain-fatty-acid 96.7 0.0097 2.1E-07 65.5 10.7 28 89-117 249-276 (696)
82 PRK12406 long-chain-fatty-acid 96.6 0.028 6.1E-07 58.8 13.4 26 90-116 152-177 (509)
83 PRK06188 acyl-CoA synthetase; 96.6 0.019 4.2E-07 60.2 11.8 26 92-118 170-195 (524)
84 PTZ00342 acyl-CoA synthetase; 96.6 0.011 2.4E-07 65.7 10.3 28 89-117 303-330 (746)
85 PLN02246 4-coumarate--CoA liga 96.6 0.021 4.6E-07 60.2 11.9 28 89-117 178-205 (537)
86 PRK06087 short chain acyl-CoA 96.5 0.016 3.5E-07 61.2 10.7 27 90-117 187-213 (547)
87 PRK13383 acyl-CoA synthetase; 96.5 0.016 3.5E-07 60.8 10.6 37 292-333 291-330 (516)
88 PRK08043 bifunctional acyl-[ac 96.5 0.027 5.8E-07 62.1 12.6 28 90-118 365-392 (718)
89 PLN02430 long-chain-fatty-acid 96.5 0.044 9.5E-07 60.0 14.1 29 89-118 219-247 (660)
90 PLN03051 acyl-activating enzym 96.4 0.04 8.6E-07 57.8 12.9 26 90-116 119-144 (499)
91 PRK05691 peptide synthase; Val 96.2 0.031 6.8E-07 73.2 12.9 30 89-119 1272-1301(4334)
92 PLN02654 acetate-CoA ligase 96.2 0.043 9.2E-07 60.1 12.2 26 90-116 275-300 (666)
93 PTZ00216 acyl-CoA synthetase; 96.2 0.076 1.6E-06 58.5 14.1 29 89-118 263-291 (700)
94 PRK05691 peptide synthase; Val 96.2 0.031 6.8E-07 73.2 12.4 29 89-118 2332-2360(4334)
95 PLN03102 acyl-activating enzym 96.1 0.033 7.2E-07 59.7 10.6 25 91-116 187-211 (579)
96 PRK06814 acylglycerophosphoeth 95.9 0.064 1.4E-06 62.1 12.2 28 89-117 792-819 (1140)
97 PRK06178 acyl-CoA synthetase; 95.8 0.12 2.6E-06 54.9 13.0 28 89-117 208-235 (567)
98 PRK03584 acetoacetyl-CoA synth 95.7 0.065 1.4E-06 58.3 10.5 23 92-115 265-287 (655)
99 PRK07768 long-chain-fatty-acid 95.5 0.075 1.6E-06 56.1 9.9 29 89-118 151-179 (545)
100 PRK08276 long-chain-fatty-acid 95.4 0.077 1.7E-06 55.3 9.4 23 92-115 142-164 (502)
101 PRK06018 putative acyl-CoA syn 95.3 0.16 3.5E-06 53.6 11.8 23 92-115 179-201 (542)
102 KOG1179 Very long-chain acyl-C 94.3 0.035 7.6E-07 58.7 3.3 29 85-115 238-266 (649)
103 KOG1256 Long-chain acyl-CoA sy 92.3 0.15 3.3E-06 55.5 4.4 54 62-118 228-282 (691)
104 KOG1176 Acyl-CoA synthetase [L 91.8 0.99 2.1E-05 48.5 9.8 54 293-349 299-357 (537)
105 PF04443 LuxE: Acyl-protein sy 89.8 0.54 1.2E-05 48.0 5.4 85 22-118 27-116 (365)
106 COG1021 EntE Peptide arylation 88.1 0.28 6E-06 50.3 1.9 84 307-412 319-424 (542)
107 PRK07868 acyl-CoA synthetase; 87.2 1.2 2.6E-05 51.4 6.5 37 293-333 720-757 (994)
108 TIGR02372 4_coum_CoA_lig 4-cou 86.9 0.89 1.9E-05 46.6 4.9 53 54-118 70-122 (386)
109 PRK13391 acyl-CoA synthetase; 85.1 1.7 3.7E-05 45.4 6.0 35 294-333 276-313 (511)
110 PRK13390 acyl-CoA synthetase; 84.1 3.3 7.2E-05 43.0 7.6 19 93-112 151-169 (501)
111 PRK07798 acyl-CoA synthetase; 83.8 2.8 6E-05 43.7 6.9 22 94-116 167-188 (533)
112 PRK07824 O-succinylbenzoic aci 81.4 1.4 3E-05 43.8 3.4 28 90-118 35-62 (358)
113 PRK07445 O-succinylbenzoic aci 78.4 2.1 4.5E-05 44.5 3.7 27 90-117 120-146 (452)
114 PRK09029 O-succinylbenzoic aci 75.2 2.7 5.9E-05 43.2 3.5 29 89-118 134-162 (458)
115 PRK05851 long-chain-fatty-acid 74.6 3.1 6.8E-05 43.8 3.8 28 90-118 152-179 (525)
116 PRK07769 long-chain-fatty-acid 69.8 4.7 0.0001 43.6 3.9 27 90-117 180-206 (631)
117 PRK07445 O-succinylbenzoic aci 69.8 7.6 0.00017 40.3 5.3 35 293-333 230-267 (452)
118 PRK07769 long-chain-fatty-acid 67.6 8.1 0.00018 41.7 5.2 37 293-333 306-350 (631)
119 PRK08008 caiC putative crotono 67.0 3.5 7.5E-05 43.0 2.1 28 89-117 172-199 (517)
120 PRK12476 putative fatty-acid-- 66.7 6 0.00013 42.6 3.9 27 90-117 193-219 (612)
121 PRK05851 long-chain-fatty-acid 66.0 6 0.00013 41.7 3.7 28 385-412 367-406 (525)
122 PRK08008 caiC putative crotono 64.1 16 0.00034 38.1 6.4 25 307-333 301-325 (517)
123 PRK05850 acyl-CoA synthetase; 63.9 16 0.00036 38.7 6.6 27 90-117 160-186 (578)
124 PRK05620 long-chain-fatty-acid 62.2 4.6 0.0001 43.0 2.0 27 89-116 180-206 (576)
125 PRK09192 acyl-CoA synthetase; 61.7 7.1 0.00015 41.7 3.3 28 90-118 176-203 (579)
126 KOG1177 Long chain fatty acid 61.0 10 0.00022 40.1 4.1 85 29-116 165-259 (596)
127 PRK07008 long-chain-fatty-acid 60.3 17 0.00038 38.3 5.9 27 89-116 175-201 (539)
128 TIGR01217 ac_ac_CoA_syn acetoa 58.6 5.7 0.00012 43.4 1.9 24 91-115 265-288 (652)
129 PLN03052 acetate--CoA ligase; 58.3 6.2 0.00013 43.9 2.2 26 90-116 356-381 (728)
130 PRK07008 long-chain-fatty-acid 58.1 6.2 0.00013 41.6 2.1 38 292-333 292-331 (539)
131 PRK05620 long-chain-fatty-acid 58.0 25 0.00055 37.4 6.8 35 294-333 299-336 (576)
132 PRK05850 acyl-CoA synthetase; 56.2 7.1 0.00015 41.5 2.2 38 293-334 288-333 (578)
133 PLN02479 acetate-CoA ligase 55.0 7.1 0.00015 41.5 1.9 23 93-116 198-220 (567)
134 PRK07798 acyl-CoA synthetase; 53.6 6.8 0.00015 40.7 1.5 36 293-332 296-334 (533)
135 PRK08162 acyl-CoA synthetase; 47.9 11 0.00023 39.7 1.9 24 92-116 184-207 (545)
136 TIGR01217 ac_ac_CoA_syn acetoa 41.9 50 0.0011 36.0 6.0 36 293-332 384-423 (652)
137 PRK09192 acyl-CoA synthetase; 38.1 45 0.00097 35.5 4.8 27 385-411 406-448 (579)
138 PF12690 BsuPI: Intracellular 37.0 24 0.00051 28.1 1.8 22 385-406 20-43 (82)
139 PRK13390 acyl-CoA synthetase; 35.4 19 0.00042 37.3 1.4 36 293-333 270-308 (501)
140 PF03533 SPO11_like: SPO11 hom 29.5 67 0.0014 22.2 2.7 23 226-248 10-32 (43)
141 PLN03052 acetate--CoA ligase; 27.1 1.4E+02 0.0031 33.2 6.6 37 293-333 471-510 (728)
142 PRK13391 acyl-CoA synthetase; 26.4 34 0.00073 35.6 1.4 18 93-111 157-174 (511)
143 cd05830 Sortase_D_5 Sortase D 25.6 50 0.0011 28.6 2.2 28 381-410 62-89 (137)
144 COG1021 EntE Peptide arylation 25.6 37 0.00081 35.3 1.5 26 90-116 189-214 (542)
145 KOG1180 Acyl-CoA synthetase [L 24.0 44 0.00095 36.1 1.7 53 267-336 389-443 (678)
146 PTZ00297 pantothenate kinase; 23.6 64 0.0014 39.1 3.1 21 97-118 608-628 (1452)
147 COG5415 Predicted integral mem 23.1 1E+02 0.0022 29.1 3.6 69 13-81 97-178 (251)
148 COG1020 EntF Non-ribosomal pep 22.5 95 0.0021 33.4 4.0 30 88-118 364-393 (642)
149 cd06166 Sortase_D_5 Sortase D 22.2 62 0.0013 27.5 2.0 30 380-411 60-89 (126)
No 1
>PLN02620 indole-3-acetic acid-amido synthetase
Probab=100.00 E-value=2.5e-101 Score=807.06 Aligned_cols=400 Identities=39% Similarity=0.676 Sum_probs=376.5
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccHHHHHhcCCCCCCCcccccccccceecCCchhhHhhhccCCCCCcccC
Q 015118 10 VDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTG 89 (413)
Q Consensus 10 ~~~~~~~f~~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~gf~~I~t~edFr~~vPi~~Yed~~pyi~r~~~Ge~~~vl~~ 89 (413)
+++.++.++..++||+++|+++|++||++|++|+|||+|||++|+++++||++|||++|||++|||+||++||.++|||+
T Consensus 21 ~~~~l~~ie~~t~~~~~vQ~~vL~~IL~~n~~Teyg~~~~f~~i~~~~~F~~~VPv~~Yedl~pyI~Ri~~Ge~s~vL~~ 100 (612)
T PLN02620 21 NKKALQFIEDVTSNADEVQKRVLEEILSRNAHVEYLQRHGLNGRTDRETFKKVMPVITYEDIQPDINRIANGDTSPILCS 100 (612)
T ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhHHhcCCCCCCCHHHHHHhCCCccHHHhHHHHHHHHcCCCCCccCC
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999996799999
Q ss_pred CCcceeecccccCCCCcccccCchHHHHHHHHHHHHhhhhcccccc-cCCCceeEEEeccceeeecCCcceeccccceec
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYR 168 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p-~~~gk~l~~~~~~~~~~t~~Gip~g~~S~~~~~ 168 (413)
+||.+|++|||||+|++|+||+|+++++.++.++..|..++++++| +..||.+|+++.+.+.+|++|||+|++|+.+++
T Consensus 101 ~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~~~~~~~~~~~~~~~~p~l~~Gk~~~~~~~~~~~~T~~Gip~g~~st~~y~ 180 (612)
T PLN02620 101 KPISEFLTSSGTSGGERKLMPTIEEELGRRSLLYSLLMPVMSQFVPGLEKGKGMYFLFIKSEAKTPGGLVARPVLTSYYK 180 (612)
T ss_pred CChhhhhhcCCCCCCceeeeecCHHHHHHHHHHHHHHHHHHHhhCCCcccCcEEEEEecccCccCCCCcccccccchhhh
Confidence 9999999999999889999999999999888888999999999888 889999999999889999999999999999999
Q ss_pred ChhhHHHHHHHhcCCCCCCeeEeCCchhhhHHHHHhhhccccccchhhhhhhhhHHHHHHHhHHHHHHHHHHHhhcCccc
Q 015118 169 SSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLS 248 (413)
Q Consensus 169 ~~~f~~~p~~~~~~~~~P~~v~~~~d~~~~~Y~~ll~aL~~~~~l~~i~~~~~~~l~~~~~~le~~w~~l~~dI~~Gt~~ 248 (413)
+..|+.+|......|++|.+++.++|..+++||||||+|.++++|..++++|+++|+.++++|+++|++||+||++|+++
T Consensus 181 s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~v~~v~svfa~~ll~a~~~Le~~w~~L~~DI~~G~ls 260 (612)
T PLN02620 181 SSHFKDRPYDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIRFLEKHWTLLCRDIRTGTID 260 (612)
T ss_pred hhhhhhcccccccceeCcHHhccCCCHHHHHHHHHHHHhhcchhhceEEeechHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99998877665678999999999999999999999999999999988888888889999999999999999999999999
Q ss_pred cccchhHHHHHHHhhcCCChHhHHHHHHHhccCccccccccccCCCcceeeeeccchhhHHHHHhhhhcCCCCceecccC
Q 015118 249 SRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYG 328 (413)
Q Consensus 249 ~~~~~~~~r~~l~~~l~~~p~rA~~L~~~~~~~~g~~gi~~~lWP~L~~i~~~~~g~~~~y~~~l~~~~~~vpi~~~~Y~ 328 (413)
++++++++|++|.+.|+|||++|+.|+++|++. ||+|++++|||||++|+||+||+|++|+++|+.|+||+|+++.+|+
T Consensus 261 ~~itd~~~R~av~~~L~p~pelA~~i~~~c~~~-~w~gii~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ 339 (612)
T PLN02620 261 SQITDPSVREAVMKILKPDPKLADFVEAECRKE-SWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYA 339 (612)
T ss_pred ccCCCHHHHHHHHhhcCCCHHHHHHHHHHhccc-cccCcHHHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCcccccccc
Confidence 999999999999999999999999999999986 8999999999999999999999999999999999999999999999
Q ss_pred CCccccccccCCCCCCcceeeeeecCCceeeeeeccccCCCCcc----------cccCCccccceeeeecceEEEEEeec
Q 015118 329 SSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQV----------LCIEPKPVGLTEVKVGEEYEIIVTNV 398 (413)
Q Consensus 329 aSEg~i~i~~~~~~~~~~~~~~l~p~~~ffEFip~~~~e~~~~~----------~~~~~~~l~~~ele~G~~YelVvTt~ 398 (413)
||||+||||++|.|+++.+.|+|.|+++||||||++ +.+..- ..+++++|+++|||+|++|||||||.
T Consensus 340 ASE~~~ginl~P~~~p~~~sy~L~p~~~yFEFip~~--~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt~ 417 (612)
T PLN02620 340 SSECYFGVNLNPLCKPSEVSYTLIPTMAYFEFLPVH--RNNGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTTY 417 (612)
T ss_pred ccceEEEeccCCCCCcccceeeecCCcEEEEEeecc--CcccccccccccccccccccCccccHHHccCCCeEEEEEEec
Confidence 999999999999998888899999999999999987 421100 01457799999999999999999999
Q ss_pred cceeeeeeccceec
Q 015118 399 AGMKMSYTNNFLIA 412 (413)
Q Consensus 399 ~GLyRY~~gDvv~~ 412 (413)
+||||||+||||++
T Consensus 418 ~GLyRYrlGDvv~V 431 (612)
T PLN02620 418 AGLYRYRVGDVLRV 431 (612)
T ss_pred CceEEEecCCEEEE
Confidence 99999999999986
No 2
>PLN02247 indole-3-acetic acid-amido synthetase
Probab=100.00 E-value=5.6e-99 Score=790.81 Aligned_cols=408 Identities=38% Similarity=0.660 Sum_probs=377.3
Q ss_pred CcccccccChHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccHHHHHhcCCCCCCCcccccccccceecCCchhhHhhhcc
Q 015118 1 MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIID 80 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~f~~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~gf~~I~t~edFr~~vPi~~Yed~~pyi~r~~~ 80 (413)
|||..|..++++.++.++..++||+++|+++|++||++|++|+|||+|.| +|++.++||++|||++|||++|||+||++
T Consensus 1 ~~~~~~~~~~~~~~~~~e~~t~~~~~~Q~~vL~~iL~~n~~Teyg~~~~~-~i~~~e~Fk~~VPv~~Yedl~pyI~Ri~~ 79 (606)
T PLN02247 1 MLPSYDPNDNEAGLKLLEDLTTNACQIQQQVLEEILTQNAGTEYLRSFLD-GESDKQSFKNKVPVVNYEDIKPCIERIAN 79 (606)
T ss_pred CCCccCCcchHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhhhhcCc-cCCCHHHHHHhCCCccHHHhHHHHHHHHc
Confidence 88999999999999999999999999999999999999999999999855 89999999999999999999999999999
Q ss_pred CCCCCcccCCCcceeecccccCCCCcccccCchHHHHHHHHHHHHhhhhcccccc-cCCCceeEEEeccceeeecCCcce
Q 015118 81 GDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNA 159 (413)
Q Consensus 81 Ge~~~vl~~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p-~~~gk~l~~~~~~~~~~t~~Gip~ 159 (413)
||.+++++++||.+|++|||||+|++|+||+|+++++++..++..|..++++..| +..||.+|+++.+++.+|++|+|+
T Consensus 80 Ge~~~llt~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~~~~~~l~~~~~~~~~p~l~~Gk~~~~~~~~~~~~T~~Gip~ 159 (606)
T PLN02247 80 GESSSIISAQPITELLTSSGTSGGQPKLMPSTAEELDRKTFFYNLLVPVMNKYVDGLDQGKGMYLLFIKPEISTPSGLMA 159 (606)
T ss_pred CCCCceeCCCCcceeeccCCCCCCceeEeeccHHHHHHHHHHHHHHHHHHHhcCCCcccCcEEEEEecCcCccCCCCccc
Confidence 9965567799999999999999889999999999998877778999989999878 889999999999999999999999
Q ss_pred eccccceecChhhHHHHHHHhcCCCCCCeeEeCCchhhhHHHHHhhhccccccchhhhhhhhhHHHHHHHhHHHHHHHHH
Q 015118 160 GTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELC 239 (413)
Q Consensus 160 g~~S~~~~~~~~f~~~p~~~~~~~~~P~~v~~~~d~~~~~Y~~ll~aL~~~~~l~~i~~~~~~~l~~~~~~le~~w~~l~ 239 (413)
|++|+.++++.+|+.++......|++|.+++.++|..+++||||||+|++++++..++++|++++++++++|+++|++||
T Consensus 160 g~~~t~y~~s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~vl~v~svfa~s~l~a~~~Le~~we~L~ 239 (606)
T PLN02247 160 RPVLTSYYKSSNFRNRPFNRYNVYTSPDETILCQDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDHWKELC 239 (606)
T ss_pred ccccchhhccccccccccccccceeCcHHhhcCCCHHHHHHHHHHHHhhccccccEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 99999999998887766543468999999999999999999999999998877777777777777999999999999999
Q ss_pred HHhhcCccccccchhHHHHHHHhhc-CCChHhHHHHHHHhccCccccccccccCCCcceeeeeccchhhHHHHHhhhhcC
Q 015118 240 DDIREGVLSSRITVPSIRAAMSKIL-KPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAG 318 (413)
Q Consensus 240 ~dI~~Gt~~~~~~~~~~r~~l~~~l-~~~p~rA~~L~~~~~~~~g~~gi~~~lWP~L~~i~~~~~g~~~~y~~~l~~~~~ 318 (413)
+||++|++++++++|++|+++...+ .|||++|++|+++|.+. ||.|++++|||||++|+||+||+|++|+++|+.|+|
T Consensus 240 ~DI~~G~ls~~it~p~~R~a~~~~l~~p~peLA~~l~~~c~~~-~w~gi~~rLWP~lk~I~~~~tGsm~~Y~~~L~~y~g 318 (606)
T PLN02247 240 SNIRTGCVSDWITDPSCRNAVSSILSKPNSELADLIESECSGK-SWEGIIKRLWPRTKYIEVIVTGSMAQYIPTLEFYSG 318 (606)
T ss_pred HHHhcCCcccccCCHHHHHHHhhcccCCCHHHHHHHHHHhccc-CccccHHHhCCCCcEEEEECCCCHHHHHHHHHHHcC
Confidence 9999999999999999999999999 69999999999999885 999999999999999999999999999999999999
Q ss_pred CCCceecccCCCccccccccCCCCCCcceeeeeecCCceeeeeeccccCCCCc----------c-----cccCCccccce
Q 015118 319 DLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQ----------V-----LCIEPKPVGLT 383 (413)
Q Consensus 319 ~vpi~~~~Y~aSEg~i~i~~~~~~~~~~~~~~l~p~~~ffEFip~~~~e~~~~----------~-----~~~~~~~l~~~ 383 (413)
|+|+++.+|+||||+||||++|.++++.+.|+|.|+++||||||++ +.+.. . .++++++|+++
T Consensus 319 glpl~s~~Y~sSE~~~ginl~p~~~p~~~sy~L~p~~~yFEFip~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 396 (606)
T PLN02247 319 GLPLVSTMYASSECYFGINLKPLSDPSDVSYTLLPNMAYFEFLPVD--KNNGEVIHFVQCNGTDDDDDALKEDLEIVDLV 396 (606)
T ss_pred CCceecccccccceEEEeccCcCCCccCCceeecCCcEEEEEeecC--CCcccccccccccccccccccccccCceecHH
Confidence 9999999999999999999999988887899999999999999987 43210 0 01356699999
Q ss_pred eeeecceEEEEEeeccceeeeeeccceec
Q 015118 384 EVKVGEEYEIIVTNVAGMKMSYTNNFLIA 412 (413)
Q Consensus 384 ele~G~~YelVvTt~~GLyRY~~gDvv~~ 412 (413)
|||+|+.|||||||.+||||||+||||++
T Consensus 397 evk~G~~YelVvTt~~GLYRYrlGDvv~V 425 (606)
T PLN02247 397 DVKVGHYYELVVTTFTGLYRYRVGDILMV 425 (606)
T ss_pred HccCCCeEEEEEEecCceEEEecCCEEEE
Confidence 99999999999999999999999999986
No 3
>PLN02249 indole-3-acetic acid-amido synthetase
Probab=100.00 E-value=3.7e-93 Score=752.23 Aligned_cols=396 Identities=39% Similarity=0.664 Sum_probs=363.1
Q ss_pred ChHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccHHHHHhcCCCCCCCcccccccccceecCCchhhHhhhccCCCCCccc
Q 015118 9 DVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILT 88 (413)
Q Consensus 9 ~~~~~~~~f~~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~gf~~I~t~edFr~~vPi~~Yed~~pyi~r~~~Ge~~~vl~ 88 (413)
++++.++.++..++||+++|+++|++||++|++|+|||+|||++|+++++||++|||++|||++|||+|+++||.++|||
T Consensus 19 ~~~~~l~~~e~~t~~~~~~Q~~vL~~iL~~n~~Teyg~~~gf~~i~~~~~F~~~VPv~~Yedl~pyIeRi~~Ge~~~vL~ 98 (597)
T PLN02249 19 KDVKALKFIEEMTRNPDSVQEKVLGEILSRNSNTEYLKRFDLNGAVDRKTFKSKVPVVTYEDLKTEIQRISNGDRSPILS 98 (597)
T ss_pred cHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhHHhcCCCCCCCHHHHHHhCCCccHHHhHHHHHHHHcCCCCceeC
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999998677999
Q ss_pred CCCcceeecccccCCCCcccccCchHHHH--HHHHHHHHhhhhcccccc-cCCCceeEEEeccceeeecCCcceeccccc
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELME--TTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTN 165 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~--~~~~~~~~~~~~~~~~~p-~~~gk~l~~~~~~~~~~t~~Gip~g~~S~~ 165 (413)
++||.+|++|||||+|++|+||+|+++++ .+..++..|.. +..+| +..||.|++++.+.+..|.+|+|+|++++.
T Consensus 99 ~~pi~~f~~SSGTT~g~~K~IP~T~~~l~~~~~~~~~~~~~~--~~~~~~l~~Gk~l~~~~~~~~~~t~gG~p~~~~~~~ 176 (597)
T PLN02249 99 SHPITEFLTSSGTSAGERKLMPTIEEDIDRRQLLGSLLMPVM--NLYVPGLDKGKGLYFLFVKSESKTSGGLPARPALTS 176 (597)
T ss_pred CCchhhhcccCCCCCCceeEEeccHHHHHHHHHHHHHHHHHH--hccCCccccCcEEEEEeccccccCCCCCccCccccc
Confidence 99999999999999999999999999998 34555666633 33356 888999998988889999999999999988
Q ss_pred eecChhhHHHHHHHhcCCCCCCeeEeCCchhhhHHHHHhhhccccccchhhhhhhhhHHHHHHHhHHHHHHHHHHHhhcC
Q 015118 166 VYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREG 245 (413)
Q Consensus 166 ~~~~~~f~~~p~~~~~~~~~P~~v~~~~d~~~~~Y~~ll~aL~~~~~l~~i~~~~~~~l~~~~~~le~~w~~l~~dI~~G 245 (413)
++++..|+..+ +...|++|.+++.+.|..+++||||||||..++++..|+++||++++.++++++++|+++|+||++|
T Consensus 177 ~~~~~~f~~~~--~~~~~~~P~ev~~~~D~~~~~Y~~lL~gL~~~~~~~~i~~~~Ps~l~~~~~~l~~~weel~~dI~~g 254 (597)
T PLN02249 177 YYKSDHFRTSD--YDNVYTSPNEAILCSDSSQSMYAQMLCGLLMRHEVLRLGAVFPSGLLRAISFLQNNWKELAQDISTG 254 (597)
T ss_pred ccccccccccc--ccccccCcHHhhcCCCHHHHHHHHHHHHHhhccccceEEEECcHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 77766665543 3678999999999999999999999999999899999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHhhc-CCChHhHHHHHHHhccCccccccccccCCCcceeeeeccchhhHHHHHhhhhcCCCCcee
Q 015118 246 VLSSRITVPSIRAAMSKIL-KPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMS 324 (413)
Q Consensus 246 t~~~~~~~~~~r~~l~~~l-~~~p~rA~~L~~~~~~~~g~~gi~~~lWP~L~~i~~~~~g~~~~y~~~l~~~~~~vpi~~ 324 (413)
++++++++|++|..|...+ .|+|++|++++++|.+. +|+|++++|||||++|+||++|+|.+|+++|++|+|++|+++
T Consensus 255 ~~~~~~~~~~~~~~v~~i~g~P~~~la~~i~~~~~~~-~~~gii~~lWPnl~~i~~~~~G~~~~Y~~~l~~~~g~~~~~~ 333 (597)
T PLN02249 255 TLSSKIFDPAIKNRMSKILNKPDQELAEFLIGVCSQE-NWEGIITKIWPNTKYLDVIVTGAMAQYIPMLEYYSGGLPMAS 333 (597)
T ss_pred CCcccccchHHHHHHHhhcCCCCHHHHHHHHHHhccc-cccccHHHhCCCCCeEEEEecCChHHHHHHHHHHcCCCcccc
Confidence 9999999999999999988 69999999999999875 799999999999999999999999999999999999999999
Q ss_pred cccCCCccccccccCCCCCCcceeeeeecCCceeeeeeccccCCCCcccccCCccccceeeeecceEEEEEeeccceeee
Q 015118 325 ADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGMKMS 404 (413)
Q Consensus 325 ~~Y~aSEg~i~i~~~~~~~~~~~~~~l~p~~~ffEFip~~~~e~~~~~~~~~~~~l~~~ele~G~~YelVvTt~~GLyRY 404 (413)
++|+||||+||||+++.|+++..+|+|+|+++||||||.+ +.++ ...+++++|.++|||+|++|+|||||.+|||||
T Consensus 334 ~~Y~ASEg~~gi~~~~~~~p~~~~~~l~~~~~ffEFiP~~--~~~~-~~~~~~~~v~l~eVe~G~~Y~lVvTT~~GLyRY 410 (597)
T PLN02249 334 TIYASSESYFGINLNPMCKPSEVSYTIMPNMAYFEFLPHN--HDGD-GALDETSLVELADVEVGKEYELVITTYAGLYRY 410 (597)
T ss_pred ccccccceEEEeecCCCCCCCCcceEecCCcEEEEeeecc--cCCc-ccCCCCcEecHHHcCCCCeEEEEEEcccceeEe
Confidence 9999999999999999888777899999999999999988 5322 011467899999999999999999999999999
Q ss_pred eeccceec
Q 015118 405 YTNNFLIA 412 (413)
Q Consensus 405 ~~gDvv~~ 412 (413)
++||+|++
T Consensus 411 ~iGDvVrv 418 (597)
T PLN02249 411 RVGDILRV 418 (597)
T ss_pred ecCCEEEE
Confidence 99999986
No 4
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin. The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.
Probab=100.00 E-value=3.5e-93 Score=749.50 Aligned_cols=370 Identities=36% Similarity=0.632 Sum_probs=293.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhcccHHHHHhcCCCCCCCccc--ccccccceecCCchhhHhhhccCCCCCcccCC
Q 015118 13 LIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPES--FKSCVPLVTHEDLQPYIQRIIDGDISPILTGK 90 (413)
Q Consensus 13 ~~~~f~~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~gf~~I~t~ed--Fr~~vPi~~Yed~~pyi~r~~~Ge~~~vl~~~ 90 (413)
.+++|++.++||+++|+++|++||+.|++|+|||+|||++|+|++| ||++|||++||||+|||+||++|| .+|||++
T Consensus 2 ~l~~f~~~~~~~~~~Q~~~L~~iL~~n~~T~yGr~~gf~~i~s~ed~~Fr~~VPi~~Yed~~pyIeR~~~Ge-~~vL~~~ 80 (528)
T PF03321_consen 2 VLKRFEKATKNPEQVQEEVLREILRRNADTEYGRDHGFAGIRSVEDESFRKRVPITDYEDYRPYIERIAEGE-ENVLTPG 80 (528)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHCTTSHHHHCTT--S----HHHHHHHHS--BEHHHHHHHHHHHHTT---CCTSSS
T ss_pred hHHHHHHHHhCHHHHHHHHHHHHHHhhccCHhHHhcCCCCCCCcchHHHHHhCCCccHHHHHHHHHHHhcCC-CCCCCCC
Confidence 4789999999999999999999999999999999999999999999 999999999999999999999999 5799999
Q ss_pred CcceeecccccCCCCcccccCchHHHHHHH--HHHHHhhhhcccccc-c-CCCcee--EEEeccceeeecCCcceecccc
Q 015118 91 PITTISRSSGTTQGKPKFLPFNDELMETTL--QIFRTSYAFRNREFP-I-GKGKAL--QFIYGSKQSKTKGGLNAGTATT 164 (413)
Q Consensus 91 pv~~f~~TSGTT~G~~K~IP~T~~~~~~~~--~~~~~~~~~~~~~~p-~-~~gk~l--~~~~~~~~~~t~~Gip~g~~S~ 164 (413)
|+.+|+.||||||+++|+||+|+++++.+. .++..|+.++.+++| . ..||.+ .+.+.++...|++|+|+|++|+
T Consensus 81 ~~~~f~~TSGTTg~~~K~IP~T~~~l~~~~~~~~~~~~~~~l~~~~p~~~~~gk~~~l~~~~~~~~~~t~~Gi~~g~~s~ 160 (528)
T PF03321_consen 81 PPIYFALTSGTTGGKSKLIPYTKEFLKEFRRLGAIAAWLYYLYRNFPGLLFQGKSLYLSFSFAPPPLRTPGGIPIGSISG 160 (528)
T ss_dssp --SEEEEEEEEETTEEEEEEESHHHHHHHHHHHHHHHHH--HHHHSSS--TTSE--EEEE------EE-TTS-EEE-HHH
T ss_pred CCCeEEeCCCCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHhcCcccccCCcceEEEeecCCCcccCCCCeEEecccc
Confidence 999999999999544999999999998866 457888888999999 5 578844 4444567788999999999999
Q ss_pred ceecChhhHHHHHHHhcCCCCCCeeEeCCchhhhHHHHHhhhccccccchhhhhhhhhHHHHHHHhHHHHHHHHHHHhhc
Q 015118 165 NVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIRE 244 (413)
Q Consensus 165 ~~~~~~~f~~~p~~~~~~~~~P~~v~~~~d~~~~~Y~~ll~aL~~~~~l~~i~~~~~~~l~~~~~~le~~w~~l~~dI~~ 244 (413)
+++++ .|.++..+|++|.+++.+.|.++++||||+|+|++++||++|+++||++|+.++++++++|+++|+||++
T Consensus 161 ~~~~~-----~~~~~~~~~~~P~~~~~~~~~~~~~y~~ll~~l~~~~~l~~i~~~~p~~l~~~~~~le~~~~~l~~dI~~ 235 (528)
T PF03321_consen 161 IPYRM-----IPPWFRSWFTSPSEVIAAIDDWEAKYCHLLCALLQDRDLRMISGWFPSFLLLLFRLLEKHWEELVEDIRD 235 (528)
T ss_dssp HHHT-------SCCHHG-BSS-HHHHT-S-HHHHHHHHHHHHHHCGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhh-----ChHHHccCccCCHHHHhcccHHHHHHHHHHHHhhcccCcCEEEeeCHHHHHHHHHHHHHhhhHhhHHhcC
Confidence 99874 3334456899999999999999999999999999778999999999999999999999999999999999
Q ss_pred CccccccchhHHHHHHHhhcCCChHhHHHHHHHhccCccccccccccCCCcceeeeeccchhhHHHHHhhhhcCCCCcee
Q 015118 245 GVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMS 324 (413)
Q Consensus 245 Gt~~~~~~~~~~r~~l~~~l~~~p~rA~~L~~~~~~~~g~~gi~~~lWP~L~~i~~~~~g~~~~y~~~l~~~~~~vpi~~ 324 (413)
|+++ .++|||+||++|+++|++ | .+++++|||||++|+||++|+|++|+++|++|+|++|+++
T Consensus 236 G~~~--------------~~~p~p~rA~~L~~~~~~--~-~~~~~~lWP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~ 298 (528)
T PF03321_consen 236 GTLS--------------LLRPNPERAAELRAEFEK--G-RGIPKRLWPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQS 298 (528)
T ss_dssp TS----------------C-S--HHHHHHHHHHHCC--S-TTHHHHHSTT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE
T ss_pred Cccc--------------cCCCCHHHHHHHHHhhcc--c-CCCHHHhCCCCcEEEEEcCCChHHHHHHHHHHcCCCceee
Confidence 9995 568999999999999998 6 7899999999999999999999999999999999999999
Q ss_pred cccCCCccccccccCCCCCCcceeeeeecCCceeeeeeccccCCCCcccccCCccccceeeeecceEEEEEeeccceeee
Q 015118 325 ADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGMKMS 404 (413)
Q Consensus 325 ~~Y~aSEg~i~i~~~~~~~~~~~~~~l~p~~~ffEFip~~~~e~~~~~~~~~~~~l~~~ele~G~~YelVvTt~~GLyRY 404 (413)
.+|+||||+||||++++. .+|+|+|+++||||||++ +.+++ ..++++++++||||+|++|||||||.+|||||
T Consensus 299 ~~y~ASEg~i~i~~~~~~----~~~~l~~~~~ffEFip~~--~~~~~-~~~~~~~l~~~ele~G~~YelviTt~~GLyRY 371 (528)
T PF03321_consen 299 KGYGASEGFIGIPLDPED----PGYVLAPDSGFFEFIPVD--EDEQN-PSEQPKTLLLHELEVGEEYELVITTNSGLYRY 371 (528)
T ss_dssp -EEEETTEEEEEES-CCC------EEE-TTSSEEEEEE-S--TT--------SSSEEGGG--TT-EEEEEEESTTS-SSE
T ss_pred ccccccceEEEEecCCCC----CceEeecCCeEEEEEecc--CCccc-ccCCCceecHHHhcCCCeEEEEEecccceeee
Confidence 999999999999999655 469999999999999999 65410 11579999999999999999999999999999
Q ss_pred eeccceec
Q 015118 405 YTNNFLIA 412 (413)
Q Consensus 405 ~~gDvv~~ 412 (413)
++||||++
T Consensus 372 ~iGDvVrv 379 (528)
T PF03321_consen 372 RIGDVVRV 379 (528)
T ss_dssp EECEEEEE
T ss_pred ecCCEEEE
Confidence 99999986
No 5
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=99.73 E-value=3.3e-17 Score=166.69 Aligned_cols=274 Identities=20% Similarity=0.288 Sum_probs=164.5
Q ss_pred hhhHHHHHHHHHHHHHHh-cccHHHHHhc----CCC--CCCCcccccccccceecCCchhhHh-hhccCCCCCcccCCCc
Q 015118 21 TKDAERIQRETLRKILEE-NASAEYLQNL----GLN--GRTDPESFKSCVPLVTHEDLQPYIQ-RIIDGDISPILTGKPI 92 (413)
Q Consensus 21 ~~~~~~~Q~~~L~~iL~~-~~~T~ygr~~----gf~--~I~t~edFr~~vPi~~Yed~~pyi~-r~~~Ge~~~vl~~~pv 92 (413)
-+..++.|++.|+.+++. +++++|+|++ |+. .|++.+|++ ++|+++.++++.... ++.+.. .+.+
T Consensus 20 r~eL~~lq~~rl~~~~k~~yeNsPfYr~~f~~~~v~p~~i~~l~Dl~-klP~t~K~~lre~ypf~~~~~~------~~~i 92 (438)
T COG1541 20 RKELEKLQEKRLKSTVKYVYENSPFYRKKFKEAGVDPDDIKTLEDLA-KLPFTTKDDLRENYPFGDFAVP------KEEI 92 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCChHHhhCHHHHH-hCCCCcHHHHHHhCCccccccc------ccce
Confidence 356788999999999986 9999999998 443 789999999 599999999987766 666654 3345
Q ss_pred ceeecccccCCCCcccccCchHHHHHHHHHHHHhhhhcccccccCCC-ceeEEEeccceeeecCC--cceeccccceecC
Q 015118 93 TTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKG-KALQFIYGSKQSKTKGG--LNAGTATTNVYRS 169 (413)
Q Consensus 93 ~~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p~~~g-k~l~~~~~~~~~~t~~G--ip~g~~S~~~~~~ 169 (413)
.....||||| |+|+.+|+|..-.......+...+.... ...| |..+ .++ .+...+| .-.|..
T Consensus 93 ~~ihaSSGTT-GkPt~~~~t~~D~~~wa~~~aR~~~~~g----~~~gd~v~~-~~~--yGl~tgg~~~~~ga~------- 157 (438)
T COG1541 93 VRIHASSGTT-GKPTVFGYTAKDIERWAELLARSLYSAG----VRKGDKVQN-AYG--YGLFTGGLGLHYGAE------- 157 (438)
T ss_pred EEEEccCCCC-CCceeeecCHHHHHHHHHHHHHHHHHcc----CCCCCEEEE-Eee--eccccCCchhHHHHH-------
Confidence 5689999999 9999999999876443222211111000 2234 3333 222 2112222 111100
Q ss_pred hhhHHHHHHHhcCCCCCCeeEeCCchhhhHHHHHhhhccccccchhhhhhhhhHHHHHHHhHHHHHHHHHHHhhcCcccc
Q 015118 170 STFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSS 249 (413)
Q Consensus 170 ~~f~~~p~~~~~~~~~P~~v~~~~d~~~~~Y~~ll~aL~~~~~l~~i~~~~~~~l~~~~~~le~~w~~l~~dI~~Gt~~~ 249 (413)
+ .-....| +..-....++.++--+ .. -+++..|+.++.
T Consensus 158 -------r--ig~~vip-----~~~g~~~~~~~l~~df----~~-tvI~~tps~~l~----------------------- 195 (438)
T COG1541 158 -------R--IGATVIP-----ISGGNTERQLELMKDF----KP-TVIAATPSYLLY----------------------- 195 (438)
T ss_pred -------h--hCEEEEc-----cCCccHHHHHHHHHhc----CC-cEEEEChHHHHH-----------------------
Confidence 0 0001111 1111112222222000 00 011122333222
Q ss_pred ccchhHHHHHHHhhcCCChHhHHHHHHHhccCccccccccccCCCcceeeeeccch---hhHHHHHhhhhcCCCCceecc
Q 015118 250 RITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSAD 326 (413)
Q Consensus 250 ~~~~~~~r~~l~~~l~~~p~rA~~L~~~~~~~~g~~gi~~~lWP~L~~i~~~~~g~---~~~y~~~l~~~~~~vpi~~~~ 326 (413)
+|+++++. |+.++-- +++ ..+.|+ .+.-++.+++.| ++..+ ..
T Consensus 196 --------------------lae~~~~~--------G~~~~~~-~lk---~~i~gaE~~see~R~~ie~~~-g~~~~-di 241 (438)
T COG1541 196 --------------------LAEEAEEE--------GIDPDKL-SLK---KGIFGAEPWSEEMRKVIENRF-GCKAF-DI 241 (438)
T ss_pred --------------------HHHHHHHc--------CCChhhc-cee---EEEEecccCCHHHHHHHHHHh-CCcee-ec
Confidence 33333332 3223211 344 445554 377788888888 55667 99
Q ss_pred cCCCccc-cccccCCCCCCcceeeeeecCCceeeeeeccccCCCCcccccCCccccceeeeecceEEEEEeeccc----e
Q 015118 327 YGSSEGW-IGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAG----M 401 (413)
Q Consensus 327 Y~aSEg~-i~i~~~~~~~~~~~~~~l~p~~~ffEFip~~~~e~~~~~~~~~~~~l~~~ele~G~~YelVvTt~~G----L 401 (413)
||+||+. .| ..+|+... ++|+.-+..++|-+.++ ..+ . |..|+.+|||+||..- |
T Consensus 242 YGltE~~g~g---~~eC~~~~-glhi~eD~~~~Ei~dP~--t~e---------~-----l~dge~GelV~T~L~~~~~Pl 301 (438)
T COG1541 242 YGLTEGFGPG---AGECTERN-GLHIWEDHFIFEIVDPE--TGE---------Q-----LPDGERGELVITTLTKEGMPL 301 (438)
T ss_pred cccccccCCc---cccccccc-CCCcchhhceeeeecCC--cCc---------c-----CCCCCeeEEEEEeccccCcce
Confidence 9999994 43 34675544 78888888999999877 221 2 6889999999999765 9
Q ss_pred eeeeeccceec
Q 015118 402 KMSYTNNFLIA 412 (413)
Q Consensus 402 yRY~~gDvv~~ 412 (413)
.||+|||++..
T Consensus 302 IRYrtgDit~i 312 (438)
T COG1541 302 IRYRTGDITVI 312 (438)
T ss_pred EEEEcCCeeEe
Confidence 99999999864
No 6
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=99.70 E-value=6.2e-17 Score=167.96 Aligned_cols=93 Identities=17% Similarity=0.237 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHHHHHh-cccHHHHHhc----CCC--CCCCcccccccccceecCCchhhHhhhccCCCCCcc--cCCCc
Q 015118 22 KDAERIQRETLRKILEE-NASAEYLQNL----GLN--GRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPIL--TGKPI 92 (413)
Q Consensus 22 ~~~~~~Q~~~L~~iL~~-~~~T~ygr~~----gf~--~I~t~edFr~~vPi~~Yed~~pyi~r~~~Ge~~~vl--~~~pv 92 (413)
.+.++.|.+.|+++|+. +++++|+|++ |+. .|++.+|+++ +|+++.+|++..-... .+.=..+ ..+.+
T Consensus 12 ~~l~~~q~~rl~~~l~~a~~~spfYr~~~~~~g~~p~~i~sl~dl~~-lP~~~k~~lr~~~p~~--~~~~~~~~~~~~~i 88 (445)
T TIGR03335 12 GELDALVEERIRYTVHYAAEHSPFYKKWFQENNISPSDIKSHEDLLE-LPVISGEVIRKNQPPV--TDDFMFKSADWKDI 88 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHHHHH-CCCCCHHHHHhcCCcc--ccccccccCCHHHe
Confidence 46688999999999997 6899999995 665 7999999994 9999999997653100 0000111 22345
Q ss_pred ceeecccccCCCCcccccCchHHHHH
Q 015118 93 TTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 93 ~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
..+..||||| |+||.+++|.+.+..
T Consensus 89 ~~i~~TSGTT-G~Pk~v~~T~~dl~~ 113 (445)
T TIGR03335 89 YTIHETSGTS-GTPKSFFLTWDDWKR 113 (445)
T ss_pred EEEEeCCCCC-CCcceeeecHHHHHH
Confidence 5677899999 999999999887644
No 7
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=99.63 E-value=1.5e-15 Score=156.57 Aligned_cols=261 Identities=13% Similarity=0.127 Sum_probs=157.3
Q ss_pred hhhhHHHHHHHHHHHHHHh-cccHHHHHhcCCCCCCCcccccccccceecCCchhhHhhhccCC--CCCc----------
Q 015118 20 ITKDAERIQRETLRKILEE-NASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGD--ISPI---------- 86 (413)
Q Consensus 20 ~~~~~~~~Q~~~L~~iL~~-~~~T~ygr~~gf~~I~t~edFr~~vPi~~Yed~~pyi~r~~~Ge--~~~v---------- 86 (413)
.-+..++.|++.|+++|+. .++++|+|++. ++ +++ .+|+++.+++....+++.... .+..
T Consensus 20 ~~~~l~~~Q~~rL~~ll~~a~~~sPfYr~~~--~~----~l~-~lPvl~K~~~~~~fd~~~t~~l~~~~~~~~a~~~e~~ 92 (430)
T TIGR02304 20 DREALENWQAKQLEKFLQFVLSHSPWFQRYH--TI----PFN-QWPMMDKALMMEHFDELNTAGLKKDEALDCAMRSEKT 92 (430)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcChhhhhcc--CC----CHH-HCCCcCHHHHHHHHHHhhccCCChhhhhHHhhhhhhh
Confidence 3456789999999999997 69999999973 33 576 599999999999999987421 0110
Q ss_pred --cc--CCCcceeecccccCCCCcccccCchHHHHHHHHHHHHhhhhcccccc--cCC-CceeEEEeccceeeecCCcce
Q 015118 87 --LT--GKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP--IGK-GKALQFIYGSKQSKTKGGLNA 159 (413)
Q Consensus 87 --l~--~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p--~~~-gk~l~~~~~~~~~~t~~Gip~ 159 (413)
+. -+.+ ....||||| |+|-.|.++++........+ +.+..| +.. +|...+.++....
T Consensus 93 r~f~~~~~~~-~v~~TSGSS-G~p~~f~~~~~~~~~~~a~~------~~~~~~~g~~~g~r~a~~~~~~~~l-------- 156 (430)
T TIGR02304 93 RDFKPCVGNI-SVGLSSGTS-GRRGLFVVSPEEQQMWAGGI------LAKVLPDGLFAKHRIAFFLRADNNL-------- 156 (430)
T ss_pred cccccccCcE-EEEECCCCC-CCceEEEECHHHHHHHHHHH------HhhhCccccccCCcEEEEEccChhH--------
Confidence 00 1333 567899999 99999999998753221111 111122 223 3555543332200
Q ss_pred eccccceecChhhHHHHHHHhcCCCCCCeeEeCCchhhhHHHHHhhhccccccchhhhhhhhhHH-HHHHHhHHHHHHHH
Q 015118 160 GTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSL-VHAFRTFELVWEEL 238 (413)
Q Consensus 160 g~~S~~~~~~~~f~~~p~~~~~~~~~P~~v~~~~d~~~~~Y~~ll~aL~~~~~l~~i~~~~~~~l-~~~~~~le~~w~~l 238 (413)
+ ..+.+. .+ +..|++. +..++.
T Consensus 157 ------y----------~~~~~~----------------------------------------~~~~~~~~l~-~~~~~~ 179 (430)
T TIGR02304 157 ------Y----------QSVNNR----------------------------------------WISLDFFDLL-APFQAH 179 (430)
T ss_pred ------H----------HHHHhc----------------------------------------cceeeecCCC-cCHHHH
Confidence 0 000000 00 1223333 556777
Q ss_pred HHHhhcCccccccchhHHHHHHHhhcCCChHhHHHHHHHhccCccccccccccCCCcceeeeeccchhhHHHHHhhhhcC
Q 015118 239 CDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAG 318 (413)
Q Consensus 239 ~~dI~~Gt~~~~~~~~~~r~~l~~~l~~~p~rA~~L~~~~~~~~g~~gi~~~lWP~L~~i~~~~~g~~~~y~~~l~~~~~ 318 (413)
++.|.+-.+.- |.+.++....+|+++++. |+ ++ +++.|.+..-......++.|++.|
T Consensus 180 l~~L~~~~P~~----------L~g~pS~l~~LA~~~~~~--------~l--~~--~~k~ii~~~E~l~~~~r~~Ie~~f- 236 (430)
T TIGR02304 180 IKRLNQRKPSI----------IVAPPSVLRALALEVMEG--------EL--TI--KPKKVISVAEVLEPQDRELIRNVF- 236 (430)
T ss_pred HHHHHHhCCCE----------EEEcHHHHHHHHHHHHhc--------CC--CC--CceEEEEccCCCCHHHHHHHHHHh-
Confidence 77777766633 223333333445444321 33 22 455222222222356667789999
Q ss_pred CCCceecccCCCccccccccCCCCCCcceeeeeecCCceeeeeeccccCCCCcccccCCccccceeeeecceEEEEEeec
Q 015118 319 DLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV 398 (413)
Q Consensus 319 ~vpi~~~~Y~aSEg~i~i~~~~~~~~~~~~~~l~p~~~ffEFip~~~~e~~~~~~~~~~~~l~~~ele~G~~YelVvTt~ 398 (413)
+++++ ..||||||.+| .+|+. .+||+..+..|+|+.-+| +.+ ....|||+.
T Consensus 237 g~~V~-~~YG~tEg~la----~eC~~--g~lHl~ed~~~vE~~ivD--~~~--------------------~~~~ViT~L 287 (430)
T TIGR02304 237 KNTVH-QIYQATEGFLA----STCRC--GTLHLNEDLVHIEKQYLD--EHK--------------------RFVPIITDF 287 (430)
T ss_pred CCCee-EccCCchhheE----EecCC--CCEEEccccEEEEeeEEC--CCC--------------------ceEEEEecC
Confidence 47988 79999998877 66644 359999999999953333 111 122499998
Q ss_pred cc----eeeeeeccceec
Q 015118 399 AG----MKMSYTNNFLIA 412 (413)
Q Consensus 399 ~G----LyRY~~gDvv~~ 412 (413)
.. |.||+|||+++.
T Consensus 288 ~n~~~PlIRYrtGD~~~~ 305 (430)
T TIGR02304 288 TRTTQPIVRYRLNDILVE 305 (430)
T ss_pred CCccceEEeeeCCCEEEe
Confidence 76 999999998763
No 8
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=99.61 E-value=6.2e-15 Score=151.40 Aligned_cols=89 Identities=18% Similarity=0.326 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHHHHHh-cccHHHHHhc----CCC--CCCCcccccccccceecCCchhhHhh-hccCCCCCcccCCCcc
Q 015118 22 KDAERIQRETLRKILEE-NASAEYLQNL----GLN--GRTDPESFKSCVPLVTHEDLQPYIQR-IIDGDISPILTGKPIT 93 (413)
Q Consensus 22 ~~~~~~Q~~~L~~iL~~-~~~T~ygr~~----gf~--~I~t~edFr~~vPi~~Yed~~pyi~r-~~~Ge~~~vl~~~pv~ 93 (413)
++.++.|.+.|+++|+. .++++|+|++ |+. .|+|.+||++ +|+++.++++...+. +... ..+.+.
T Consensus 6 ~~l~~~q~~~l~~~~~~a~~~~pfYr~~~~~~~i~~~~i~~~~dl~~-lP~~~K~~l~~~~~~~~~~~------~~~~~~ 78 (422)
T TIGR02155 6 DELRALQTQRLKWTVKHAYENVPHYRKAFDAAGVHPDDLQSLSDLAK-FPFTQKHDLRDNYPFGLFAV------PREQVV 78 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHHHHH-CCCCcHHHHhhcCCCcccCC------ChHHcE
Confidence 56788999999999997 6889999986 554 7889999984 999999999765431 2221 123345
Q ss_pred eeecccccCCCCcccccCchHHHHH
Q 015118 94 TISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 94 ~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
++..||||| |+||.+++|...+..
T Consensus 79 ~~~~TSGTT-G~Pk~v~~t~~~~~~ 102 (422)
T TIGR02155 79 RIHASSGTT-GKPTVVGYTQNDIDT 102 (422)
T ss_pred EEEECCCCC-CCCeEeccCHHHHHH
Confidence 667899999 999999999987643
No 9
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=97.88 E-value=0.00019 Score=76.18 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=23.2
Q ss_pred CCcceeecccccCCCCcccccCchHHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
+.+.+...||||| |+||-+..|.+.+-.
T Consensus 183 ~d~a~i~~TSGTT-G~PKgV~~th~~l~~ 210 (539)
T PRK06334 183 EDVAVILFTSGTE-KLPKGVPLTHANLLA 210 (539)
T ss_pred CCEEEEEECCCCC-CCCCEEEEcHHHHHH
Confidence 4456888999999 999999999987643
No 10
>PRK09274 peptide synthase; Provisional
Probab=97.82 E-value=0.00026 Score=74.86 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=23.4
Q ss_pred CCCcceeecccccCCCCcccccCchHHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
++.+.+...||||| |+||-+..|.+.+..
T Consensus 173 ~~~~a~i~~TSGTT-G~PK~v~~s~~~l~~ 201 (552)
T PRK09274 173 PDDMAAILFTSGST-GTPKGVVYTHGMFEA 201 (552)
T ss_pred CCCeEEEEECCCCC-CCCceEEecHHHHHH
Confidence 34456888899999 999999999987643
No 11
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=97.81 E-value=0.00011 Score=74.57 Aligned_cols=102 Identities=20% Similarity=0.219 Sum_probs=60.6
Q ss_pred CCCcceeeeeccchhhHHHHHhhhhcCCCCceecccCCCcc-cccccc--CCC-CCCcceeeeeecCCceeeeeeccccC
Q 015118 292 FPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEG-WIGANV--NPS-LPPELATFAVLPNIGYFEFIPQRLGN 367 (413)
Q Consensus 292 WP~L~~i~~~~~g~~~~y~~~l~~~~~~vpi~~~~Y~aSEg-~i~i~~--~~~-~~~~~~~~~l~p~~~ffEFip~~~~e 367 (413)
+++|+.|.+.-..-....++++++.++.++++ ..||+||+ .+++.. ... ..++..+ .+.| ..-++.++++ .
T Consensus 276 l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~~G-~~~~-~~~~~ivd~~--~ 350 (417)
T PF00501_consen 276 LSSLRTVISGGEPLPPDLLRRLRKAFGNAPII-NLYGSTETGSIATIRPPEDDIEKPGSVG-KPLP-GVEVKIVDPN--T 350 (417)
T ss_dssp GTT-SEEEEESST-CHHHHHHHHHHHTTSEEE-EEEEEGGGSSEEEEEETTTHHSSTTSEB-EEST-TEEEEEECTT--T
T ss_pred cccccccccccccCChhhccccccccccccce-ecccccccceeeeccccccccccccccc-cccc-cccccccccc--c
Confidence 45688554422222366677888888777888 99999999 454422 111 1122233 2334 4555666543 1
Q ss_pred CCCcccccCCccccceeeeecceEEEEEeec---ccee--------------eeeeccceec
Q 015118 368 LESQVLCIEPKPVGLTEVKVGEEYEIIVTNV---AGMK--------------MSYTNNFLIA 412 (413)
Q Consensus 368 ~~~~~~~~~~~~l~~~ele~G~~YelVvTt~---~GLy--------------RY~~gDvv~~ 412 (413)
.+. ++.|+..||+|+.. .|.| .|+|||++..
T Consensus 351 ---------~~~-----~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~ 398 (417)
T PF00501_consen 351 ---------GEP-----LPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRL 398 (417)
T ss_dssp ---------SSB-----ESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEE
T ss_pred ---------ccc-----ccccccccccccCCccceeeeccccccccccccccceecceEEEE
Confidence 123 57899999999953 3433 3999999864
No 12
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.81 E-value=0.00032 Score=72.91 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=24.2
Q ss_pred CCCcceeecccccCCCCcccccCchHHHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELMETT 119 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~~ 119 (413)
.+.+.+...||||| |.||.|+.|...+...
T Consensus 166 ~~~~~~i~~TSGtT-G~PK~v~~t~~~l~~~ 195 (521)
T PRK06187 166 ENDAAAMLYTSGTT-GHPKGVVLSHRNLFLH 195 (521)
T ss_pred ccceEEEEECCCCC-CCCceEEeehHHHHHH
Confidence 34456788899999 9999999999876543
No 13
>PRK07514 malonyl-CoA synthase; Validated
Probab=97.77 E-value=0.00028 Score=73.45 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=23.7
Q ss_pred CCcceeecccccCCCCcccccCchHHHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELMETT 119 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~~~ 119 (413)
+.+.+...||||| |+||-|.+|...+-..
T Consensus 156 ~~~a~i~~TSGtT-G~PK~v~~s~~~l~~~ 184 (504)
T PRK07514 156 DDLAAILYTSGTT-GRSKGAMLSHGNLLSN 184 (504)
T ss_pred CCeEEEEECCCCC-CCCcEEEEecHHHHHH
Confidence 3456889999999 9999999999876443
No 14
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=97.77 E-value=0.0003 Score=73.03 Aligned_cols=56 Identities=25% Similarity=0.323 Sum_probs=32.5
Q ss_pred cccceecCCchhhHhhhccCCCCCcccCCCcceeecccccCCCCcccccCchHHHHH
Q 015118 62 CVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 62 ~vPi~~Yed~~pyi~r~~~Ge~~~vl~~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
.+|+.+.+++......-........+.++.+.+...||||| |.||-++.|.+.+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTT-G~PK~v~~t~~~~~~ 170 (503)
T PRK04813 115 GIPVITLDELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTT-GKPKGVQISHDNLVS 170 (503)
T ss_pred CCcEEehHHhhhhhhccccccccccCCCCCcEEEEECCCCC-CCCcEEEeehHHHHH
Confidence 45666666654432211110001112223345788899999 999999999987643
No 15
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=97.68 E-value=0.00071 Score=68.10 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=23.7
Q ss_pred CCcceeecccccCCCCcccccCchHHHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELMETT 119 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~~~ 119 (413)
+.+.+...||||| |+||.+..|.+.+...
T Consensus 120 ~~~~~i~~TSGTt-G~pK~v~~s~~~~~~~ 148 (408)
T TIGR01733 120 DDLAYVIYTSGST-GRPKGVVVTHRSLVNL 148 (408)
T ss_pred CCcEEEEEcCCCC-CCCCEEEeccHHHHHH
Confidence 3445888999999 9999999999877543
No 16
>PRK09088 acyl-CoA synthetase; Validated
Probab=97.67 E-value=0.00033 Score=72.74 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=22.5
Q ss_pred CCcceeecccccCCCCcccccCchHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
+.+.+...||||| |+||-++.|.+.+.
T Consensus 135 ~~~~~i~~TSGTT-G~PK~v~~s~~~l~ 161 (488)
T PRK09088 135 ERVSLILFTSGTS-GQPKGVMLSERNLQ 161 (488)
T ss_pred CCceEEEeCCCCC-CCCcEEEEehHHHH
Confidence 3445889999999 99999999988753
No 17
>PRK07788 acyl-CoA synthetase; Validated
Probab=97.65 E-value=0.00037 Score=73.76 Aligned_cols=26 Identities=35% Similarity=0.326 Sum_probs=21.1
Q ss_pred CcceeecccccCCCCcccccCchHHHH
Q 015118 91 PITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 91 pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
...+...||||| |+||-+..|.+.+-
T Consensus 208 ~~~~i~~TSGTT-G~PKgv~~s~~~~~ 233 (549)
T PRK07788 208 PGGIVILTSGTT-GTPKGAPRPEPSPL 233 (549)
T ss_pred CCcEEEECCCCC-CCCCEEeccCccHH
Confidence 334667799999 99999999988653
No 18
>PRK07529 AMP-binding domain protein; Validated
Probab=97.64 E-value=0.00047 Score=74.74 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=22.9
Q ss_pred CCCcceeecccccCCCCcccccCchHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELM 116 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~ 116 (413)
++.+.++..||||| |+||-++.|.+.+
T Consensus 212 ~d~~a~i~~TSGTT-G~PK~v~~sh~~l 238 (632)
T PRK07529 212 PDDVAAYFHTGGTT-GMPKLAQHTHGNE 238 (632)
T ss_pred cCceEEEEECCCcc-CcCCEEEEcHHHH
Confidence 34556889999999 9999999998875
No 19
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=97.63 E-value=0.00085 Score=71.06 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=22.1
Q ss_pred CCcceeecccccCCCCcccccCchHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
+-+.+...||||| |+||-+..|.+.+-
T Consensus 197 ~~~a~i~~TSGTT-G~PK~v~~s~~~l~ 223 (547)
T PRK13295 197 DDVTQLIYTSGTT-GEPKGVMHTANTLM 223 (547)
T ss_pred cceeEEEeCCCCC-CCCCEEEeccHHHH
Confidence 3445778899999 99999999998653
No 20
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=97.61 E-value=0.00064 Score=72.09 Aligned_cols=27 Identities=26% Similarity=0.166 Sum_probs=22.3
Q ss_pred CCcceeecccccCCCCcccccCchHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
+.+.+...||||| |+||-+..|.+.+.
T Consensus 180 ~~~a~il~TSGTT-G~PK~V~~t~~~~~ 206 (542)
T PRK06155 180 GDTAAILYTSGTT-GPSKGVCCPHAQFY 206 (542)
T ss_pred CCeEEEEECCCCC-CCCcEEEEEHHHHH
Confidence 3455778899999 99999999998753
No 21
>PRK06145 acyl-CoA synthetase; Validated
Probab=97.60 E-value=0.00022 Score=74.25 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=23.4
Q ss_pred cCCCcceeecccccCCCCcccccCchHHHH
Q 015118 88 TGKPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 88 ~~~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
.++.+.+...||||| |+||-++.|.+.+.
T Consensus 147 ~~~~~a~i~~TSGTT-G~PK~v~~s~~~~~ 175 (497)
T PRK06145 147 APTDLVRLMYTSGTT-DRPKGVMHSYGNLH 175 (497)
T ss_pred CccceEEEEeCCCCC-CCCcEEEEecHHHH
Confidence 344456788999999 99999999998753
No 22
>PLN02574 4-coumarate--CoA ligase-like
Probab=97.57 E-value=0.001 Score=70.88 Aligned_cols=29 Identities=28% Similarity=0.289 Sum_probs=23.7
Q ss_pred cCCCcceeecccccCCCCcccccCchHHHH
Q 015118 88 TGKPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 88 ~~~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
.++.+.+...||||| |.||-+..|.+.+-
T Consensus 196 ~~~~~a~i~~TSGTT-G~PKgV~~sh~~~~ 224 (560)
T PLN02574 196 KQDDVAAIMYSSGTT-GASKGVVLTHRNLI 224 (560)
T ss_pred CcCCEEEEEcCCCcc-CCCcEEEEeHHHHH
Confidence 344466889999999 99999999998753
No 23
>PRK06164 acyl-CoA synthetase; Validated
Probab=97.55 E-value=0.0014 Score=69.11 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=23.4
Q ss_pred CCcceeecccccCCCCcccccCchHHHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELMETT 119 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~~~ 119 (413)
+.+.+...||||| |+||-+..|.+.+...
T Consensus 181 ~~~~~i~~TSGtT-G~pK~v~~s~~~l~~~ 209 (540)
T PRK06164 181 DAGALLFTTSGTT-SGPKLVLHRQATLLRH 209 (540)
T ss_pred CceEEEEECCCCC-CCCcEEEEehHHHHHH
Confidence 4455677799999 9999999999987543
No 24
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=97.53 E-value=0.0013 Score=70.04 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=23.4
Q ss_pred CCCcceeecccccCCCCcccccCchHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
++.+.+...||||| |+||-+..|++.+-
T Consensus 171 ~~~~a~i~~TSGTT-G~PKgV~~s~~~~~ 198 (563)
T PLN02860 171 PDDAVLICFTSGTT-GRPKGVTISHSALI 198 (563)
T ss_pred CCCeEEEEecCCCC-CCCceEEeehHHHH
Confidence 44566889999999 99999999998753
No 25
>PRK08316 acyl-CoA synthetase; Validated
Probab=97.51 E-value=0.0015 Score=68.04 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=23.6
Q ss_pred cCCCcceeecccccCCCCcccccCchHHHH
Q 015118 88 TGKPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 88 ~~~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
..+.+.+...||||| |+||.+..|.+.+-
T Consensus 169 ~~~~~a~i~~TSGtT-G~PK~v~~s~~~l~ 197 (523)
T PRK08316 169 ADDDLAQILYTSGTE-SLPKGAMLTHRALI 197 (523)
T ss_pred CCCCeEEEEeCCCCC-CCCcEEEEecHHHH
Confidence 344456889999999 99999999988753
No 26
>PRK07638 acyl-CoA synthetase; Validated
Probab=97.50 E-value=0.002 Score=67.01 Aligned_cols=93 Identities=15% Similarity=0.052 Sum_probs=52.5
Q ss_pred eeccch--hhHHHHHhhhhcCCCCceecccCCCccccccccCCCC---CCcceeeeeecCCceeeeeeccccCCCCcccc
Q 015118 300 GIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSL---PPELATFAVLPNIGYFEFIPQRLGNLESQVLC 374 (413)
Q Consensus 300 ~~~~g~--~~~y~~~l~~~~~~vpi~~~~Y~aSEg~i~i~~~~~~---~~~~~~~~l~p~~~ffEFip~~~~e~~~~~~~ 374 (413)
.+.+|+ ...-.+++++.+|+++++ ..||+||+.......+.. .++..+.. .| ..-++.++.+
T Consensus 258 ~~~~G~~l~~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~~-~~-~~~~~i~d~~---------- 324 (487)
T PRK07638 258 IISSGAKWEAEAKEKIKNIFPYAKLY-EFYGASELSFVTALVDEESERRPNSVGRP-FH-NVQVRICNEA---------- 324 (487)
T ss_pred EEEcCCCCCHHHHHHHHHHcCCCeEE-EEecCCccCceEEecccccCCCCCCCCcc-cC-CcEEEEECCC----------
Confidence 445555 244556777888888888 799999994322222111 11112221 22 2344544322
Q ss_pred cCCccccceeeeecceEEEEEeecc---cee-------------eeeeccceec
Q 015118 375 IEPKPVGLTEVKVGEEYEIIVTNVA---GMK-------------MSYTNNFLIA 412 (413)
Q Consensus 375 ~~~~~l~~~ele~G~~YelVvTt~~---GLy-------------RY~~gDvv~~ 412 (413)
... ++.|+..||+|++.. |.| .|+|||++..
T Consensus 325 --g~~-----~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~ 371 (487)
T PRK07638 325 --GEE-----VQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYE 371 (487)
T ss_pred --CCC-----CCCCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeE
Confidence 112 577889999997642 222 4679998754
No 27
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=97.48 E-value=0.0015 Score=69.71 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=22.0
Q ss_pred CCcceeecccccCCCCcccccCchHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
+.+.+...||||| |+||-+..|.+.+-
T Consensus 205 ~~~a~i~~TSGTT-G~PKgV~~s~~~l~ 231 (570)
T PRK04319 205 EDGAILHYTSGST-GKPKGVLHVHNAML 231 (570)
T ss_pred CCCEEEEeCCCCC-CCCCEEEEecHHHH
Confidence 3345778899999 99999999988653
No 28
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.47 E-value=0.00093 Score=76.85 Aligned_cols=29 Identities=28% Similarity=0.309 Sum_probs=23.6
Q ss_pred CCCcceeecccccCCCCcccccCchHHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
++.+.+...||||| |+||-+..|++.+-.
T Consensus 781 ~~~~a~i~~TSGTT-G~PKgv~~s~~~~~~ 809 (1146)
T PRK08633 781 PDDTATIIFSSGSE-GEPKGVMLSHHNILS 809 (1146)
T ss_pred CCCEEEEEECCCCC-CCCceEEechHHHHH
Confidence 34456889999999 999999999987643
No 29
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=97.46 E-value=0.0019 Score=68.32 Aligned_cols=28 Identities=21% Similarity=0.282 Sum_probs=23.0
Q ss_pred CCCcceeecccccCCCCcccccCchHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
++.+.+...||||| |+||-+..|.+.+.
T Consensus 191 ~~~~~~i~~TSGTT-G~PK~v~~s~~~l~ 218 (541)
T TIGR03205 191 PDDVALLQYTGGTT-GLPKGAMLTHGNLT 218 (541)
T ss_pred ccCeEEEEECCCCC-CCCcEEEEeHHHHH
Confidence 34455788899999 99999999998764
No 30
>PRK06060 acyl-CoA synthetase; Validated
Probab=97.46 E-value=0.0007 Score=74.27 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=54.4
Q ss_pred CCcceeeeeccchh---hHHHHHhhhhcCCCCceecccCCCccccccccC--CCCCCcceeeeeecCCceeeeeeccccC
Q 015118 293 PNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVN--PSLPPELATFAVLPNIGYFEFIPQRLGN 367 (413)
Q Consensus 293 P~L~~i~~~~~g~~---~~y~~~l~~~~~~vpi~~~~Y~aSEg~i~i~~~--~~~~~~~~~~~l~p~~~ffEFip~~~~e 367 (413)
++|+ ++++|+. ...++++++.+++++++ ..||.||+....... ....++..+. ..|+ .-++.+..+
T Consensus 260 ~slr---~i~~gGe~l~~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~iG~-p~~~-~~v~i~d~~--- 330 (705)
T PRK06060 260 RSLR---CVVSAGEALELGLAERLMEFFGGIPIL-DGIGSTEVGQTFVSNRVDEWRLGTLGR-VLPP-YEIRVVAPD--- 330 (705)
T ss_pred ccee---EEEEecCcCCHHHHHHHHHHcCCCceE-eeeeccccCceEEeccCCCCCcCcccc-cCCC-cEEEEECCC---
Confidence 5677 5566653 44556777778888988 999999984221111 1111111122 2233 233334322
Q ss_pred CCCcccccCCccccceeeeecceEEEEEeec---ccee-----------eeeeccceec
Q 015118 368 LESQVLCIEPKPVGLTEVKVGEEYEIIVTNV---AGMK-----------MSYTNNFLIA 412 (413)
Q Consensus 368 ~~~~~~~~~~~~l~~~ele~G~~YelVvTt~---~GLy-----------RY~~gDvv~~ 412 (413)
+ +. +..|+..||+|+.. .|.| -|+|||++..
T Consensus 331 -g--------~~-----~~~g~~GEl~i~g~~v~~GY~~~~~~~~~~~~~~~TGDl~~~ 375 (705)
T PRK06060 331 -G--------TT-----AGPGVEGDLWVRGPAIAKGYWNRPDSPVANEGWLDTRDRVCI 375 (705)
T ss_pred -C--------CC-----CCCCCceEEEEccchhhhhhhCCCcccccCCCcEECCeeEEE
Confidence 1 12 46788899999752 2333 2899999864
No 31
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.44 E-value=0.0012 Score=68.68 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=24.8
Q ss_pred ccCCCcceeecccccCCCCcccccCchHHHHH
Q 015118 87 LTGKPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 87 l~~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
+..+.+.+...||||| |.||.++.|...+..
T Consensus 163 ~~~~~~a~i~~TSGtT-G~PK~v~~s~~~l~~ 193 (513)
T PRK07656 163 VDPDDVADILFTSGTT-GRPKGAMLTHRQLLS 193 (513)
T ss_pred CCCCceEEEEeCCCCC-CCCCEEEEecHHHHH
Confidence 3445566889999999 999999999887643
No 32
>PRK05852 acyl-CoA synthetase; Validated
Probab=97.43 E-value=0.0019 Score=68.11 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=21.6
Q ss_pred ceeecccccCCCCcccccCchHHHHH
Q 015118 93 TTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 93 ~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
.+...||||| |+||-|+.|++.+..
T Consensus 179 a~il~TSGTT-G~PKgv~~~~~~~~~ 203 (534)
T PRK05852 179 AMIMFTGGTT-GLPKMVPWTHANIAS 203 (534)
T ss_pred eEEEeCCCCC-CCCcEEEecHHHHHH
Confidence 5788999999 999999999987644
No 33
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.43 E-value=0.00072 Score=71.92 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=23.1
Q ss_pred CCCcceeecccccCCCCcccccCchHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
++.+.+...||||| |+||-+..|.+.+.
T Consensus 206 ~~d~a~i~~TSGTT-G~PKgv~~s~~~l~ 233 (562)
T PRK05677 206 ADDVAVLQYTGGTT-GVAKGAMLTHRNLV 233 (562)
T ss_pred ccCEEEEEeCCCCC-CCCcEEEEehhHHH
Confidence 34456888999999 99999999998763
No 34
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=97.42 E-value=0.001 Score=72.02 Aligned_cols=26 Identities=31% Similarity=0.241 Sum_probs=21.6
Q ss_pred CCcceeecccccCCCCcccccCchHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELM 116 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~ 116 (413)
+.+.+...||||| |+||-+..|...+
T Consensus 245 ~d~a~i~~TSGTT-G~PKgV~~s~~~~ 270 (637)
T PRK00174 245 EDPLFILYTSGST-GKPKGVLHTTGGY 270 (637)
T ss_pred CCcEEEEECCCCC-CCCceEEeCcchh
Confidence 3455888999999 9999999998754
No 35
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=97.40 E-value=0.0033 Score=66.45 Aligned_cols=30 Identities=23% Similarity=0.394 Sum_probs=24.3
Q ss_pred CCCcceeecccccCCCCcccccCchHHHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELMETT 119 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~~ 119 (413)
++.+.+...||||| |+||-++.|.+.+...
T Consensus 181 ~~~~a~i~~TSGTT-G~PKgV~~s~~~l~~~ 210 (536)
T PRK10946 181 ADEVAFFQLSGGST-GTPKLIPRTHNDYYYS 210 (536)
T ss_pred CCCeEEEEeCCCCC-CCCcEEEEehHHHHHH
Confidence 34456888999999 9999999999986543
No 36
>PRK06839 acyl-CoA synthetase; Validated
Probab=97.39 E-value=0.0022 Score=66.55 Aligned_cols=26 Identities=42% Similarity=0.438 Sum_probs=21.9
Q ss_pred CCcceeecccccCCCCcccccCchHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELM 116 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~ 116 (413)
+.+.+...||||| |.||-+.+|...+
T Consensus 149 ~~~~~i~~TSGTT-G~PK~v~~s~~~l 174 (496)
T PRK06839 149 SASFIICYTSGTT-GKPKGAVLTQENM 174 (496)
T ss_pred CCcEEEEeCCCCC-CCCcEEEEEhHHH
Confidence 3445788999999 9999999999875
No 37
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.36 E-value=0.001 Score=70.41 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=53.2
Q ss_pred eeccchh---hHHHHHhhhhcCCCCceecccCCCccc-cccccCCCC---CCcceeeeeecCCceeeeeeccccCCCCcc
Q 015118 300 GIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGW-IGANVNPSL---PPELATFAVLPNIGYFEFIPQRLGNLESQV 372 (413)
Q Consensus 300 ~~~~g~~---~~y~~~l~~~~~~vpi~~~~Y~aSEg~-i~i~~~~~~---~~~~~~~~l~p~~~ffEFip~~~~e~~~~~ 372 (413)
++.+|+. ...++.+++.+++++++ ..||+||+. ++....... ..+..+. ..| ....+.++.+ .
T Consensus 294 ~i~~gg~~~~~~~~~~~~~~~~~~~l~-~~YG~tE~~~~~~~~~~~~~~~~~~~~G~-~~~-~~~~~i~d~~----~--- 363 (542)
T PRK07786 294 VLSWGAAPASDTLLRQMAATFPEAQIL-AAFGQTEMSPVTCMLLGEDAIRKLGSVGK-VIP-TVAARVVDEN----M--- 363 (542)
T ss_pred EEEECCCCCCHHHHHHHHHHcCCCeEE-eeecccccccceEecCcccccccCCCccc-cCC-CceEEEECCC----C---
Confidence 5554543 55667788888888888 899999983 322111110 0111222 112 3445555422 1
Q ss_pred cccCCccccceeeeecceEEEEEeec---ccee-------------eeeeccceec
Q 015118 373 LCIEPKPVGLTEVKVGEEYEIIVTNV---AGMK-------------MSYTNNFLIA 412 (413)
Q Consensus 373 ~~~~~~~l~~~ele~G~~YelVvTt~---~GLy-------------RY~~gDvv~~ 412 (413)
+ ++.+|+.+||++... .|+| +|+|||++..
T Consensus 364 -----~-----~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~ 409 (542)
T PRK07786 364 -----N-----DVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQ 409 (542)
T ss_pred -----C-----CCcCCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEE
Confidence 1 246788899999653 3333 3999998864
No 38
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.35 E-value=0.0016 Score=69.22 Aligned_cols=28 Identities=32% Similarity=0.349 Sum_probs=23.2
Q ss_pred CCCcceeecccccCCCCcccccCchHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
.+.+.+...||||| |+||-|..|.+.+-
T Consensus 218 ~~~~a~i~~TSGTT-G~PK~v~~s~~~l~ 245 (573)
T PRK05605 218 PDDVALILYTSGTT-GKPKGAQLTHRNLF 245 (573)
T ss_pred CCCEEEEEcCCCCC-CCCcEEEEecHHHH
Confidence 44556888999999 99999999998763
No 39
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=97.34 E-value=0.003 Score=65.72 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=23.2
Q ss_pred CCcceeecccccCCCCcccccCchHHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
+-+.+...||||| |.||-++.|.+.+..
T Consensus 141 ~~~~~il~TSGTT-G~PK~v~~s~~~~~~ 168 (502)
T TIGR01734 141 DDNYYIIYTSGST-GNPKGVQISHDNLVS 168 (502)
T ss_pred CCeEEEEECCCCC-CCCCEEEEecHHHHH
Confidence 3345889999999 999999999988643
No 40
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=97.34 E-value=0.0018 Score=69.98 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=23.6
Q ss_pred CCCcceeecccccCCCCcccccCchHHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
++.+.+...||||| |+||-+..|.+.+-.
T Consensus 208 ~~d~a~ilyTSGTT-G~PKgV~~sh~~l~~ 236 (614)
T PRK08180 208 PDTIAKFLFTSGST-GLPKAVINTHRMLCA 236 (614)
T ss_pred cCceEEEEECCCCC-CCCCEEEeehHHHHH
Confidence 34456889999999 999999999987643
No 41
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.30 E-value=0.0035 Score=66.04 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.0
Q ss_pred CCcceeecccccCCCCcccccCchHHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
+.+.+...||||| |+||-+..|.+.+-.
T Consensus 190 ~~~a~i~~TSGtT-G~PK~v~~s~~~l~~ 217 (546)
T PRK08314 190 DDLAVLPYTSGTT-GVPKGCMHTHRTVMA 217 (546)
T ss_pred CCeEEEEeCCCCC-CCCcEEEEecHHHHH
Confidence 3455788999999 999999999987644
No 42
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=97.29 E-value=0.0023 Score=67.63 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=22.7
Q ss_pred CCCcceeecccccCCCCcccccCchHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
++.+.+...||||| |.||-+..+.+.+-
T Consensus 194 ~~~~a~i~~TSGtT-G~PK~v~~s~~~~~ 221 (538)
T TIGR03208 194 PDDVTQLIYTSGTT-GEPKGVMHTANTLF 221 (538)
T ss_pred CCCeEEEEECCCCC-CCCcEEEeehHHHH
Confidence 34456788899999 99999999987653
No 43
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=97.27 E-value=0.0012 Score=77.25 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=23.9
Q ss_pred CCCcceeecccccCCCCcccccCchHHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
++.+.+...||||| |+||-+.+|.+.+..
T Consensus 597 ~~~~a~i~~TSGST-G~PKgV~~~h~~l~~ 625 (1296)
T PRK10252 597 PHHTAYIIFTSGST-GRPKGVMVGQTAIVN 625 (1296)
T ss_pred CCCeEEEEECCCCC-CCCCEEEeccHHHHH
Confidence 44556888999999 999999999987644
No 44
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=97.26 E-value=0.0019 Score=70.39 Aligned_cols=24 Identities=29% Similarity=0.196 Sum_probs=20.6
Q ss_pred CcceeecccccCCCCcccccCchHH
Q 015118 91 PITTISRSSGTTQGKPKFLPFNDEL 115 (413)
Q Consensus 91 pv~~f~~TSGTT~G~~K~IP~T~~~ 115 (413)
-+.+...||||| |+||-+..|...
T Consensus 255 d~~~IlyTSGTT-G~PKgV~~sh~~ 278 (647)
T PTZ00237 255 HPLYILYTSGTT-GNSKAVVRSNGP 278 (647)
T ss_pred CcEEEEEcCCCC-CCCCeEEEcCcH
Confidence 345889999999 999999998875
No 45
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=97.25 E-value=0.0022 Score=69.28 Aligned_cols=25 Identities=32% Similarity=0.235 Sum_probs=21.0
Q ss_pred CcceeecccccCCCCcccccCchHHH
Q 015118 91 PITTISRSSGTTQGKPKFLPFNDELM 116 (413)
Q Consensus 91 pv~~f~~TSGTT~G~~K~IP~T~~~~ 116 (413)
-+.+...||||| |+||-+..|...+
T Consensus 237 ~~a~il~TSGTT-G~PKgV~~s~~~~ 261 (625)
T TIGR02188 237 DPLFILYTSGST-GKPKGVLHTTGGY 261 (625)
T ss_pred CceEEEecCCCC-CCCCeEEECccHh
Confidence 345889999999 9999999998754
No 46
>PRK12467 peptide synthase; Provisional
Probab=97.24 E-value=0.002 Score=83.35 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=26.2
Q ss_pred cCCCcceeecccccCCCCcccccCchHHHHHHHH
Q 015118 88 TGKPITTISRSSGTTQGKPKFLPFNDELMETTLQ 121 (413)
Q Consensus 88 ~~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~~~~ 121 (413)
.++.+.+...||||| |+||-+.+|.+.+..+..
T Consensus 654 ~~~~~a~iiyTSGST-G~PKgV~~th~~l~~~~~ 686 (3956)
T PRK12467 654 DPDNLAYVIYTSGST-GQPKGVAISHGALANYVC 686 (3956)
T ss_pred CCCCeEEEEECCCCC-CCcCEEEEecHHHHHHHH
Confidence 345566889999999 999999999998755433
No 47
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=97.24 E-value=0.0023 Score=68.58 Aligned_cols=29 Identities=28% Similarity=0.196 Sum_probs=23.6
Q ss_pred CCcceeecccccCCCCcccccCchHHHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELMETT 119 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~~~ 119 (413)
+.+.+...||||| |+||-+..|.+.+...
T Consensus 199 ~~~a~il~TSGTT-G~PKgV~~sh~~l~~~ 227 (600)
T PRK08279 199 KDTAFYIYTSGTT-GLPKAAVMSHMRWLKA 227 (600)
T ss_pred cccEEEEEcCCCC-CCCcEEEEeHHHHHHH
Confidence 3445888999999 9999999999876443
No 48
>PRK12583 acyl-CoA synthetase; Provisional
Probab=97.22 E-value=0.0038 Score=65.94 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=23.0
Q ss_pred CCcceeecccccCCCCcccccCchHHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
+.+.+...||||| |.||-+..|...+..
T Consensus 201 ~~~a~i~~TSGsT-G~PK~v~~s~~~l~~ 228 (558)
T PRK12583 201 DDPINIQYTSGTT-GFPKGATLSHHNILN 228 (558)
T ss_pred CCcEEEEECCCCC-CCCceEEeeHHHHHH
Confidence 3345789999999 999999999987643
No 49
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=97.22 E-value=0.0026 Score=68.72 Aligned_cols=26 Identities=35% Similarity=0.300 Sum_probs=21.0
Q ss_pred CCcceeecccccCCCCcccccCchHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELM 116 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~ 116 (413)
+.+.+...||||| |+||-+..+...+
T Consensus 233 ~d~a~il~TSGTT-G~PKgV~~~~~~~ 258 (629)
T PRK10524 233 NEPSYILYTSGTT-GKPKGVQRDTGGY 258 (629)
T ss_pred CCceEEEeecCCC-CCCceEEECCcHH
Confidence 3455889999999 9999999887653
No 50
>PRK07867 acyl-CoA synthetase; Validated
Probab=97.19 E-value=0.0032 Score=66.66 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=22.5
Q ss_pred CCcceeecccccCCCCcccccCchHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
+.+.+...||||| |+||-+..|.+.+.
T Consensus 152 ~~~~~i~~TSGTT-G~PKgv~~s~~~l~ 178 (529)
T PRK07867 152 DDLFMLIFTSGTS-GDPKAVRCTHRKVA 178 (529)
T ss_pred cceEEEEECCCCC-CCCcEEEecHHHHH
Confidence 3445788999999 99999999998764
No 51
>PRK07787 acyl-CoA synthetase; Validated
Probab=97.19 E-value=0.005 Score=63.86 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=23.1
Q ss_pred CcceeecccccCCCCcccccCchHHHHHH
Q 015118 91 PITTISRSSGTTQGKPKFLPFNDELMETT 119 (413)
Q Consensus 91 pv~~f~~TSGTT~G~~K~IP~T~~~~~~~ 119 (413)
-+.+...||||| |.||-|..|.+.+...
T Consensus 129 ~~a~i~~TSGTT-G~PK~v~~t~~~l~~~ 156 (471)
T PRK07787 129 APALIVYTSGTT-GPPKGVVLSRRAIAAD 156 (471)
T ss_pred ceEEEEECCCCC-CCCCEEEEeHHHHHHH
Confidence 345888999999 9999999999876443
No 52
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=97.17 E-value=0.0041 Score=64.84 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=22.4
Q ss_pred CcceeecccccCCCCcccccCchHHHHH
Q 015118 91 PITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 91 pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
.+.+...||||| |+||-+..|.+.+..
T Consensus 162 ~~~~i~~TSGTT-G~PK~v~~t~~~l~~ 188 (515)
T TIGR03098 162 DMAAILYTSGST-GRPKGVVLSHRNLVA 188 (515)
T ss_pred CeEEEEECCCCC-CCCceEEEecHHHHH
Confidence 345778999999 999999999987643
No 53
>PLN02736 long-chain acyl-CoA synthetase
Probab=97.16 E-value=0.0016 Score=70.76 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=23.1
Q ss_pred CCCcceeecccccCCCCcccccCchHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
++.+.+...||||| |+||-+..|.+.+-
T Consensus 220 ~dd~a~IlyTSGTT-G~PKGV~lsh~~l~ 247 (651)
T PLN02736 220 PEDVATICYTSGTT-GTPKGVVLTHGNLI 247 (651)
T ss_pred ccceEEEEEcCCCC-CCCcEEEEecHHHH
Confidence 34456888999999 99999999998753
No 54
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=97.16 E-value=0.0055 Score=66.30 Aligned_cols=243 Identities=21% Similarity=0.271 Sum_probs=122.1
Q ss_pred CCCcceeecccccCCCCcccccCchHHHHHHHHHHHHhhhhcccccc-cCCC-ceeEEEecccee-ee-cCCcceecccc
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IGKG-KALQFIYGSKQS-KT-KGGLNAGTATT 164 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p-~~~g-k~l~~~~~~~~~-~t-~~Gip~g~~S~ 164 (413)
++.+.....||||| |+||=.=.|.+.+...... +.+..| +..+ +.|.|+.-+... +. ..++..+..-.
T Consensus 190 ~dDlatiiYTSGTT-G~PKGVmLth~N~~~~v~~-------~~~~~~~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~ 261 (613)
T COG1022 190 PDDLATIIYTSGTT-GTPKGVMLTHRNLLAQVAG-------IDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVT 261 (613)
T ss_pred ccceEEEEEcCCCC-CCCceEEEehHHHHHHHHH-------HHhhCCCCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceE
Confidence 55566889999999 9999999988765332222 111222 4444 566655444331 11 12222111111
Q ss_pred ceec-C-hhhHHHHHHHhcCCCCCCeeEeCCchhhhHHHHHhhhccccccchhhhhhhhhHHHHHHHhHHHHH-HHHHHH
Q 015118 165 NVYR-S-STFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVW-EELCDD 241 (413)
Q Consensus 165 ~~~~-~-~~f~~~p~~~~~~~~~P~~v~~~~d~~~~~Y~~ll~aL~~~~~l~~i~~~~~~~l~~~~~~le~~w-~~l~~d 241 (413)
..+. + +.++. ...-..|-..+.++-.++..|....-.+.+.+..... +|+...... ...-+.
T Consensus 262 ~~~~~~~~~~~~-----dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~----------if~~a~~~~~~~~~~~ 326 (613)
T COG1022 262 VLFKEDPRTLLE-----DLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRK----------LFRWALKVAYKKISRA 326 (613)
T ss_pred EEecCCHHHHHH-----HHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHH----------HHHHHHHHHHHHHHhh
Confidence 1111 1 11111 1223456666677777777777766555443221110 121111111 111112
Q ss_pred hhcCccccccchhHHHHHHHhhcCCChHhHHHHHHHhccCccccccccccCCCcceeeeeccchh--hHHHHHhhhhcCC
Q 015118 242 IREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSM--EHYLKKLRHYAGD 319 (413)
Q Consensus 242 I~~Gt~~~~~~~~~~r~~l~~~l~~~p~rA~~L~~~~~~~~g~~gi~~~lWP~L~~i~~~~~g~~--~~y~~~l~~~~~~ 319 (413)
+..+....+. +..|--..+.+++.+++ +++ -..|||+ ++...++=+-. +
T Consensus 327 ~~~~~~~~~~------------~~~d~LVf~Kir~~lGg-------------ri~---~~~sGGa~l~~~~~~f~~~l-G 377 (613)
T COG1022 327 LLGGGPLSWL------------LVADRLVFRKIRDALGG-------------RIR---YALSGGAPLSPELLHFFRSL-G 377 (613)
T ss_pred hcccCCcchh------------hhhhHHHHHHHHHHhCC-------------cEE---EEEecCCcCCHHHHHHHHHc-C
Confidence 2222221111 11233345555655442 455 4455554 33332222334 4
Q ss_pred CCceecccCCCccccccccCCCCCCcceeeeeecCCceeeeeeccccCCCCcccccCCccccceeeeecceEEEEEee--
Q 015118 320 LPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN-- 397 (413)
Q Consensus 320 vpi~~~~Y~aSEg~i~i~~~~~~~~~~~~~~l~p~~~ffEFip~~~~e~~~~~~~~~~~~l~~~ele~G~~YelVvTt-- 397 (413)
+|+. .|||-||..=++..++.. .|.+ +. .++++.-.|++.+++.||.|-.
T Consensus 378 i~i~-eGYGlTEts~~~~v~~~~----------------~~~~------gt-----vG~p~p~~evKI~d~GEilVRG~~ 429 (613)
T COG1022 378 IPIL-EGYGLTETSAVVSVNPPD----------------RFVL------GT-----VGKPLPGIEVKIADDGEILVRGPN 429 (613)
T ss_pred CCeE-EEecccccccceEEcccc----------------Cccc------CC-----cCCcCCCceEEEccCceEEEecch
Confidence 9999 999999985444444221 1111 21 3567788899999999999966
Q ss_pred -ccceee--------------eeecccee
Q 015118 398 -VAGMKM--------------SYTNNFLI 411 (413)
Q Consensus 398 -~~GLyR--------------Y~~gDvv~ 411 (413)
..|.|. ++|||++.
T Consensus 430 Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~ 458 (613)
T COG1022 430 VMKGYYKNPEATAEAFTEDGWFRTGDLGE 458 (613)
T ss_pred hcchhcCChHHHhhhccccCCcccCceeE
Confidence 456554 57888864
No 55
>PRK13382 acyl-CoA synthetase; Provisional
Probab=97.15 E-value=0.0022 Score=67.94 Aligned_cols=24 Identities=33% Similarity=0.140 Sum_probs=19.6
Q ss_pred cceeecccccCCCCcccccCchHHH
Q 015118 92 ITTISRSSGTTQGKPKFLPFNDELM 116 (413)
Q Consensus 92 v~~f~~TSGTT~G~~K~IP~T~~~~ 116 (413)
..+...||||| |+||-+-+|...+
T Consensus 198 ~~~il~TSGTT-G~PKgv~~s~~~~ 221 (537)
T PRK13382 198 GRVILLTSGTT-GTPKGARRSGPGG 221 (537)
T ss_pred CeEEEECCCCC-CCCCEEEeccchH
Confidence 44667799999 9999999998544
No 56
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=97.14 E-value=0.0031 Score=67.16 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=21.5
Q ss_pred cCCCcceeecccccCCCCcccccCchHH
Q 015118 88 TGKPITTISRSSGTTQGKPKFLPFNDEL 115 (413)
Q Consensus 88 ~~~pv~~f~~TSGTT~G~~K~IP~T~~~ 115 (413)
..+| .+...||||| |+||-+.-|...
T Consensus 170 ~~dp-l~ilYTSGTT-G~PKgv~H~~gg 195 (528)
T COG0365 170 ADDP-LFLLYTSGTT-GKPKGIVHSHGG 195 (528)
T ss_pred CCCe-EEEEeCCCCC-CCCceEEEeCch
Confidence 3445 4889999999 999999998874
No 57
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=97.13 E-value=0.0028 Score=67.25 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=22.8
Q ss_pred CCCcceeecccccCCCCcccccCchHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELM 116 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~ 116 (413)
++-+.+...||||| |.||-+.+|...+
T Consensus 203 ~~~~a~il~TSGTT-G~PK~v~~s~~~l 229 (557)
T PRK07059 203 PDDVAFLQYTGGTT-GVSKGATLLHRNI 229 (557)
T ss_pred cCceEEEEeCCCCC-CCCcEEEeecHHH
Confidence 34456888999999 9999999999875
No 58
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=97.11 E-value=0.0061 Score=65.97 Aligned_cols=27 Identities=33% Similarity=0.258 Sum_probs=22.0
Q ss_pred CCCcceeecccccCCCCcccccCchHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELM 116 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~ 116 (413)
++.+.+...||||| |+||-|..+...+
T Consensus 231 ~~~~a~ilyTSGTT-G~PKgV~~sh~~~ 257 (628)
T TIGR02316 231 SNEPSYILYTSGTT-GKPKGVQRDVGGY 257 (628)
T ss_pred CCCcEEEEECCCCC-CCCceEEECCcHH
Confidence 34456889999999 9999999887754
No 59
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=97.08 E-value=0.0047 Score=65.39 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=22.4
Q ss_pred CCcceeecccccCCCCcccccCchHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
+.+.+...||||| |+||-++.|++.+.
T Consensus 184 ~~~a~il~TSGTT-G~PKgv~~s~~~l~ 210 (546)
T PLN02330 184 TDLCALPFSSGTT-GISKGVMLTHRNLV 210 (546)
T ss_pred ccEEEEEeCCCCc-CCCcEEEEehHHHH
Confidence 3445788999999 99999999988763
No 60
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=97.06 E-value=0.0016 Score=71.19 Aligned_cols=28 Identities=36% Similarity=0.438 Sum_probs=22.9
Q ss_pred CCCcceeecccccCCCCcccccCchHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
++-+.....||||| |+||-+..|++.+-
T Consensus 219 ~dd~a~i~yTSGTT-G~PKGV~lth~~l~ 246 (660)
T PLN02861 219 KTDICTIMYTSGTT-GEPKGVILTNRAII 246 (660)
T ss_pred CCceEEEEecCCCC-CCCCEEEEecHHHH
Confidence 34455888999999 99999999998753
No 61
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=97.06 E-value=0.0033 Score=74.24 Aligned_cols=30 Identities=23% Similarity=0.121 Sum_probs=24.2
Q ss_pred CCCcceeecccccCCCCcccccCchHHHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELMETT 119 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~~ 119 (413)
++-+.+...||||| |+||-+.+|.+.+...
T Consensus 414 ~~d~a~ii~TSGST-G~PKgV~~sh~~l~~~ 443 (1389)
T TIGR03443 414 PDSNPTLSFTSGSE-GIPKGVLGRHFSLAYY 443 (1389)
T ss_pred CCCceEEEECCCCC-CCCCEEEeccHHHHHH
Confidence 34456888999999 9999999999876443
No 62
>PLN02614 long-chain acyl-CoA synthetase
Probab=97.05 E-value=0.0015 Score=71.46 Aligned_cols=29 Identities=41% Similarity=0.474 Sum_probs=23.6
Q ss_pred CCCcceeecccccCCCCcccccCchHHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
++-+.+...||||| |+||-+..|.+.+-.
T Consensus 222 ~~d~a~I~yTSGTT-G~PKGV~lth~nl~~ 250 (666)
T PLN02614 222 KSDICTIMYTSGTT-GDPKGVMISNESIVT 250 (666)
T ss_pred CCceEEEEEcCCCC-CCCcEEEEecHHHHH
Confidence 34456888999999 999999999987643
No 63
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=97.02 E-value=0.011 Score=62.36 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=23.7
Q ss_pred CCCcceeecccccCCCCcccccCchHHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
++.+.+...||||| |.||-+..|++.+..
T Consensus 182 ~~~~a~i~~TSGTT-G~PKgv~~s~~~~~~ 210 (527)
T TIGR02275 182 SDEVAFFQLSGGST-GTPKLIPRTHNDYYY 210 (527)
T ss_pred CCccEEEEeCCCCC-CCCceeeeehHHHHH
Confidence 34456889999999 999999999987644
No 64
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.00 E-value=0.0075 Score=64.00 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=23.6
Q ss_pred CCCcceeecccccCCCCcccccCchHHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
.+-+.+...||||| |+||-+..|...+..
T Consensus 205 ~~~~a~i~~TSGtT-G~PK~v~~t~~~l~~ 233 (560)
T PRK08974 205 PEDLAFLQYTGGTT-GVAKGAMLTHRNMLA 233 (560)
T ss_pred CCCeEEEEECCCCC-CCCcEEEEchHHHHH
Confidence 34456888999999 999999999987643
No 65
>PRK13388 acyl-CoA synthetase; Provisional
Probab=97.00 E-value=0.008 Score=63.75 Aligned_cols=29 Identities=24% Similarity=0.254 Sum_probs=24.0
Q ss_pred cCCCcceeecccccCCCCcccccCchHHHH
Q 015118 88 TGKPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 88 ~~~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
.++.+.+...||||| |+||-+..|.+.+-
T Consensus 148 ~~~~~a~i~~TSGTT-G~PKgv~~s~~~~~ 176 (540)
T PRK13388 148 DAMDPFMLIFTSGTT-GAPKAVRCSHGRLA 176 (540)
T ss_pred CCCCeEEEEECCCCC-CCCCEEEecHHHHH
Confidence 345566889999999 99999999998764
No 66
>PRK12582 acyl-CoA synthetase; Provisional
Probab=97.00 E-value=0.0079 Score=65.08 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=22.7
Q ss_pred CCcceeecccccCCCCcccccCchHHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
+.+.+...||||| |+||-+..|.+.+-.
T Consensus 220 ~d~a~i~yTSGTT-G~PKgV~~th~~l~~ 247 (624)
T PRK12582 220 DTVAKYLFTSGST-GMPKAVINTQRMMCA 247 (624)
T ss_pred CceEEEEEcCCCC-CCCceEEeeHHHHHH
Confidence 4455788999999 999999999887543
No 67
>PRK07470 acyl-CoA synthetase; Validated
Probab=96.99 E-value=0.0024 Score=67.07 Aligned_cols=28 Identities=29% Similarity=0.260 Sum_probs=23.5
Q ss_pred CCCcceeecccccCCCCcccccCchHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
.+.+.+...||||| |.||.++.|...+.
T Consensus 162 ~~~~a~i~~TSGTT-G~PK~v~~s~~~l~ 189 (528)
T PRK07470 162 HDDPCWFFFTSGTT-GRPKAAVLTHGQMA 189 (528)
T ss_pred CCCeEEEEeCCCCC-CCCcEEEEehhhHH
Confidence 34456889999999 99999999998763
No 68
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=96.95 E-value=0.0071 Score=64.23 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.2
Q ss_pred CcceeecccccCCCCcccccCchHHHH
Q 015118 91 PITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 91 pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
.+.+...||||| |.||-+..|.+.+.
T Consensus 207 ~~a~i~~TSGTT-G~PK~v~~s~~~l~ 232 (563)
T PRK06710 207 DLALLQYTGGTT-GFPKGVMLTHKNLV 232 (563)
T ss_pred CEEEEEcCCCCC-CCCceEEEehHHHH
Confidence 455888999999 99999999988763
No 69
>PRK12467 peptide synthase; Provisional
Probab=96.94 E-value=0.0051 Score=79.65 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=24.9
Q ss_pred cCCCcceeecccccCCCCcccccCchHHHHHH
Q 015118 88 TGKPITTISRSSGTTQGKPKFLPFNDELMETT 119 (413)
Q Consensus 88 ~~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~~ 119 (413)
.++-+.+...||||| |+||-+.+|.+.+-..
T Consensus 1716 ~~~~~ayiiyTSGST-G~PKGV~~th~~l~~~ 1746 (3956)
T PRK12467 1716 APQNLAYVIYTSGST-GRPKGAGNRHGALVNR 1746 (3956)
T ss_pred CCcCcEEEEECCCcC-CCCCEEEEcCHHHHHH
Confidence 344556889999999 9999999999876443
No 70
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=96.94 E-value=0.0056 Score=64.87 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=22.9
Q ss_pred CCcceeecccccCCCCcccccCchHHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
+.+.+...||||| |+||-|.+|...+-.
T Consensus 208 ~~~~~i~~TSGTT-G~PK~v~~s~~~l~~ 235 (560)
T PRK08751 208 DDIAFLQYTGGTT-GVAKGAMLTHRNLVA 235 (560)
T ss_pred ccEEEEEcCCCCC-CCCCEEEEccHHHHH
Confidence 3455788999999 999999999987643
No 71
>PRK08315 AMP-binding domain protein; Validated
Probab=96.94 E-value=0.0086 Score=63.31 Aligned_cols=27 Identities=30% Similarity=0.281 Sum_probs=22.7
Q ss_pred CCcceeecccccCCCCcccccCchHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
+.+.+...||||| |+||-+++|.+.+.
T Consensus 199 ~~~a~i~~TSGtT-G~PK~v~~s~~~l~ 225 (559)
T PRK08315 199 DDPINIQYTSGTT-GFPKGATLTHRNIL 225 (559)
T ss_pred CCcEEEEEcCCCC-CCcceEEeeHHHHH
Confidence 3445889999999 99999999998763
No 72
>PRK12316 peptide synthase; Provisional
Probab=96.94 E-value=0.007 Score=80.01 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=25.0
Q ss_pred cCCCcceeecccccCCCCcccccCchHHHHHH
Q 015118 88 TGKPITTISRSSGTTQGKPKFLPFNDELMETT 119 (413)
Q Consensus 88 ~~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~~ 119 (413)
.++.+.+...||||| |+||-+.+|.+.+-..
T Consensus 653 ~~~~~a~ii~TSGST-G~PKgV~~~h~~l~~~ 683 (5163)
T PRK12316 653 NPENLAYVIYTSGST-GKPKGAGNRHRALSNR 683 (5163)
T ss_pred CCCCeEEEEECCCcC-CCCCEeeEcCHHHHHH
Confidence 345556889999999 9999999999876443
No 73
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=96.90 E-value=0.011 Score=60.19 Aligned_cols=29 Identities=38% Similarity=0.403 Sum_probs=23.6
Q ss_pred CCCcceeecccccCCCCcccccCchHHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
.+.+.++..||||| |.||.|+.|.+.+..
T Consensus 110 ~~~~~~i~~TSGtT-G~PK~v~~s~~~~~~ 138 (436)
T TIGR01923 110 MDQIATLMFTSGTT-GKPKAVPHTFRNHYA 138 (436)
T ss_pred cCceEEEEeCCCCC-CCCcEEEEehHHHHH
Confidence 34456889999999 999999999987643
No 74
>PRK05857 acyl-CoA synthetase; Validated
Probab=96.87 E-value=0.0043 Score=65.70 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=22.8
Q ss_pred CCCcceeecccccCCCCcccccCchHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELM 116 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~ 116 (413)
.+.+.++..||||| |.||-|..|...+
T Consensus 168 ~~~~a~i~~TSGTT-G~PKgV~~sh~~~ 194 (540)
T PRK05857 168 SEDPLAMIFTSGTT-GEPKAVLLANRTF 194 (540)
T ss_pred CCCeEEEEeCCCCC-CCCCeEEEechhh
Confidence 34456889999999 9999999999865
No 75
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.84 E-value=0.0074 Score=64.27 Aligned_cols=36 Identities=17% Similarity=0.426 Sum_probs=27.7
Q ss_pred Ccceeeeeccchh---hHHHHHhhhhcCCCCceecccCCCccc
Q 015118 294 NAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGW 333 (413)
Q Consensus 294 ~L~~i~~~~~g~~---~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 333 (413)
+|+ ++.+|+. ..-.+++++.|+..++. .+||.||+.
T Consensus 292 ~lr---~~~~gg~~~~~~~~~~~~~~~~~~~i~-~~YG~TE~~ 330 (534)
T COG0318 292 SLR---LVLSGGAPLPPELLERFEERFGPIAIL-EGYGLTETS 330 (534)
T ss_pred ceE---EEEecCCcCCHHHHHHHHHHhCCCceE-EeecccccC
Confidence 466 7777775 56667777778766777 999999995
No 76
>PRK12316 peptide synthase; Provisional
Probab=96.83 E-value=0.0041 Score=82.06 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=24.9
Q ss_pred CCCcceeecccccCCCCcccccCchHHHHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELMETTL 120 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~~~ 120 (413)
++-+.+...||||| |+||-+-++.+.+....
T Consensus 3195 ~~~~ayii~TSGST-G~PKgV~~~h~~l~~~~ 3225 (5163)
T PRK12316 3195 PENLAYVIYTSGST-GKPKGVGIRHSALSNHL 3225 (5163)
T ss_pred CCCeEEEEeCCCCC-CCCCEEEEccHHHHHHH
Confidence 34456888999999 99999999999875443
No 77
>PRK08308 acyl-CoA synthetase; Validated
Probab=96.78 E-value=0.012 Score=59.96 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=22.2
Q ss_pred CcceeecccccCCCCcccccCchHHHHH
Q 015118 91 PITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 91 pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
...+...||||| |+||-+..|.+.+..
T Consensus 102 ~~~~i~~TSGtT-G~PKgv~~s~~~l~~ 128 (414)
T PRK08308 102 EPSLLQYSSGTT-GEPKLIRRSWTEIDR 128 (414)
T ss_pred CceEEEECCCCC-CCCcEEEEehHhHHH
Confidence 345778899999 999999999887644
No 78
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=96.77 E-value=0.016 Score=61.63 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=21.8
Q ss_pred CcceeecccccCCCCcccccCchHHHH
Q 015118 91 PITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 91 pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
.+.+...||||| |+||-+..|.+.+.
T Consensus 208 ~~a~i~~TSGTT-G~PKgv~~s~~~l~ 233 (562)
T PRK12492 208 DIAVLQYTGGTT-GLAKGAMLTHGNLV 233 (562)
T ss_pred CeEEEEeCCCCC-CCCceEEEechhHH
Confidence 345788999999 99999999987653
No 79
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=96.74 E-value=0.01 Score=62.02 Aligned_cols=29 Identities=24% Similarity=0.067 Sum_probs=23.7
Q ss_pred CCCcceeecccccCCCCcccccCchHHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
++.+.+...||||| |+||-+..|.+.+..
T Consensus 160 ~~~~a~i~~TSGTT-G~PK~v~~s~~~~~~ 188 (508)
T TIGR02262 160 ADDPAFWLYSSGST-GMPKGVVHTHSNPYW 188 (508)
T ss_pred CCCcEEEEeCCCCC-CCCcEEEEechhHHH
Confidence 34456888999999 999999999987644
No 80
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=96.72 E-value=0.017 Score=59.78 Aligned_cols=26 Identities=38% Similarity=0.346 Sum_probs=21.4
Q ss_pred CCcceeecccccCCCCcccccCchHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELM 116 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~ 116 (413)
+.+.+...||||| |+||.|+.|...+
T Consensus 141 ~~~a~i~~TSGtT-G~PK~v~~s~~~~ 166 (483)
T PRK03640 141 DEVATIMYTSGTT-GKPKGVIQTYGNH 166 (483)
T ss_pred CCeEEEEeCCCcC-CCCcEEEEecHHH
Confidence 3445778899999 9999999998754
No 81
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=96.69 E-value=0.0097 Score=65.51 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=23.2
Q ss_pred CCCcceeecccccCCCCcccccCchHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
++-+.....||||| |+||-+..|++.+-
T Consensus 249 ~dd~a~I~yTSGTT-G~PKGV~lth~~l~ 276 (696)
T PLN02387 249 PNDIAVIMYTSGST-GLPKGVMMTHGNIV 276 (696)
T ss_pred ccceEEEEecCCCC-CCCCEEEEEcHHHH
Confidence 34456788999999 99999999998753
No 82
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=96.65 E-value=0.028 Score=58.76 Aligned_cols=26 Identities=27% Similarity=0.232 Sum_probs=20.6
Q ss_pred CCcceeecccccCCCCcccccCchHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELM 116 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~ 116 (413)
+.+.+...||||| |.||-+..|....
T Consensus 152 ~~~a~i~~TSGtT-G~PK~v~~s~~~~ 177 (509)
T PRK12406 152 PQPQSMIYTSGTT-GHPKGVRRAAPTP 177 (509)
T ss_pred CCceEEEECCCCC-CCCceEEEechhH
Confidence 3456889999999 9999998776543
No 83
>PRK06188 acyl-CoA synthetase; Validated
Probab=96.59 E-value=0.019 Score=60.18 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=22.4
Q ss_pred cceeecccccCCCCcccccCchHHHHH
Q 015118 92 ITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 92 v~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
+.+...||||| |.||-+..|...+..
T Consensus 170 ~a~i~~TSGtT-G~pk~v~~s~~~l~~ 195 (524)
T PRK06188 170 IAGLAYTGGTT-GKPKGVMGTHRSIAT 195 (524)
T ss_pred eEEEEeCCCCC-CCCceeeeehHHHHH
Confidence 56788999999 999999999987644
No 84
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=96.59 E-value=0.011 Score=65.73 Aligned_cols=28 Identities=36% Similarity=0.439 Sum_probs=23.2
Q ss_pred CCCcceeecccccCCCCcccccCchHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
++-+.....||||| |.||=+..|++.+-
T Consensus 303 ~dd~a~IiYTSGTT-G~PKGVmlTH~nl~ 330 (746)
T PTZ00342 303 PDFITSIVYTSGTS-GKPKGVMLSNKNLY 330 (746)
T ss_pred ccceEEEEEcCCCC-CCCCEEEEccHHHH
Confidence 34456889999999 99999999998753
No 85
>PLN02246 4-coumarate--CoA ligase
Probab=96.55 E-value=0.021 Score=60.19 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=22.7
Q ss_pred CCCcceeecccccCCCCcccccCchHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
++.+.+...||||| |+||-+..|.+.+.
T Consensus 178 ~~~~~~i~~TSGtT-G~PKgv~~s~~~l~ 205 (537)
T PLN02246 178 PDDVVALPYSSGTT-GLPKGVMLTHKGLV 205 (537)
T ss_pred ccCEEEEEeCCCCC-CCCceEEEeHHHHH
Confidence 34455778899999 99999999998754
No 86
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=96.53 E-value=0.016 Score=61.25 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=22.3
Q ss_pred CCcceeecccccCCCCcccccCchHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
+.+.+...||||| |+||-+.+|...+-
T Consensus 187 ~d~a~i~~TSGTT-G~PK~v~~t~~~l~ 213 (547)
T PRK06087 187 DELAAVLFTSGTE-GLPKGVMLTHNNIL 213 (547)
T ss_pred CCeEEEEeCCCCC-CCCcEEEEecHHHH
Confidence 3445778899999 99999999998763
No 87
>PRK13383 acyl-CoA synthetase; Provisional
Probab=96.51 E-value=0.016 Score=60.77 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=24.8
Q ss_pred CCCcceeeeeccchh---hHHHHHhhhhcCCCCceecccCCCccc
Q 015118 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGW 333 (413)
Q Consensus 292 WP~L~~i~~~~~g~~---~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 333 (413)
.|.++ .+.+|+. ..-++++.+.++ +++. ..||+||..
T Consensus 291 ~~~lr---~i~~gG~~l~~~~~~~~~~~~g-~~v~-~~YG~tE~~ 330 (516)
T PRK13383 291 LPQLR---VVMSSGDRLDPTLGQRFMDTYG-DILY-NGYGSTEVG 330 (516)
T ss_pred CCceE---EEEECCCCCCHHHHHHHHHHcC-chhh-hcccccccc
Confidence 35666 5555553 444566666674 5777 999999984
No 88
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=96.50 E-value=0.027 Score=62.13 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=22.9
Q ss_pred CCcceeecccccCCCCcccccCchHHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
+.+.+...||||| |+||-+..|.+.+-.
T Consensus 365 ~d~a~i~~TSGTT-G~PKgv~~sh~~l~~ 392 (718)
T PRK08043 365 EDAALILFTSGSE-GHPKGVVHSHKSLLA 392 (718)
T ss_pred CCeEEEEECCCCC-CCCCEEEEcHHHHHH
Confidence 3455788899999 999999999987633
No 89
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=96.49 E-value=0.044 Score=60.01 Aligned_cols=29 Identities=38% Similarity=0.447 Sum_probs=23.8
Q ss_pred CCCcceeecccccCCCCcccccCchHHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
++-+.....||||| |+||-+..|++.+..
T Consensus 219 ~~d~a~iiyTSGTT-G~PKGV~lth~~~~~ 247 (660)
T PLN02430 219 PLDICTIMYTSGTS-GDPKGVVLTHEAVAT 247 (660)
T ss_pred cCceEEEEECCCCC-CCCCEEEeecHHHHH
Confidence 44556889999999 999999999987643
No 90
>PLN03051 acyl-activating enzyme; Provisional
Probab=96.43 E-value=0.04 Score=57.83 Aligned_cols=26 Identities=42% Similarity=0.594 Sum_probs=22.1
Q ss_pred CCcceeecccccCCCCcccccCchHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELM 116 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~ 116 (413)
+.+.+...||||| |+||-+..|++.+
T Consensus 119 ~d~a~i~yTSGTT-G~PKgV~~sh~~~ 144 (499)
T PLN03051 119 ESVTNILFSSGTT-GEPKAIPWTHLSP 144 (499)
T ss_pred cceEEEEeCCCCC-CCCceEEEccchH
Confidence 4456888999999 9999999998864
No 91
>PRK05691 peptide synthase; Validated
Probab=96.25 E-value=0.031 Score=73.17 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=24.4
Q ss_pred CCCcceeecccccCCCCcccccCchHHHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELMETT 119 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~~ 119 (413)
++.+.+...||||| |+||-+.++.+.+...
T Consensus 1272 ~~~~a~ii~TSGST-G~PKgV~~~h~~l~~~ 1301 (4334)
T PRK05691 1272 GDNLAYVIYTSGST-GQPKGVGNTHAALAER 1301 (4334)
T ss_pred CCCeEEEEEcCCCC-CCCceeEeecHHHHHH
Confidence 34456889999999 9999999999876543
No 92
>PLN02654 acetate-CoA ligase
Probab=96.23 E-value=0.043 Score=60.11 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=21.5
Q ss_pred CCcceeecccccCCCCcccccCchHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELM 116 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~ 116 (413)
+-+.+...||||| |+||-|..|...+
T Consensus 275 ~d~~~ilyTSGTT-G~PKgVv~sh~~~ 300 (666)
T PLN02654 275 EDPLFLLYTSGST-GKPKGVLHTTGGY 300 (666)
T ss_pred CCceEEEecCCCC-CCCceEEecccHH
Confidence 3445889999999 9999999988754
No 93
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=96.21 E-value=0.076 Score=58.51 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=24.0
Q ss_pred CCCcceeecccccCCCCcccccCchHHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
++.+.+...||||| |+||-+..|++.+-.
T Consensus 263 ~~d~a~iiyTSGTT-G~PKGV~lth~nl~~ 291 (700)
T PTZ00216 263 NDDLALIMYTSGTT-GDPKGVMHTHGSLTA 291 (700)
T ss_pred cccEEEEEEeCCCC-CcCcEEEEEhHHHHH
Confidence 44456888999999 999999999987644
No 94
>PRK05691 peptide synthase; Validated
Probab=96.17 E-value=0.031 Score=73.20 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=23.6
Q ss_pred CCCcceeecccccCCCCcccccCchHHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
++.+.+...||||| |+||-+.++.+.+..
T Consensus 2332 ~~~~a~ii~TSGST-G~PKGV~~~h~~l~~ 2360 (4334)
T PRK05691 2332 PQHQAYLIYTSGST-GKPKGVVVSHGEIAM 2360 (4334)
T ss_pred CCCcEEEEeCCCCC-CCCCEEEEecHHHHH
Confidence 34456888999999 999999999887644
No 95
>PLN03102 acyl-activating enzyme; Provisional
Probab=96.14 E-value=0.033 Score=59.69 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.0
Q ss_pred CcceeecccccCCCCcccccCchHHH
Q 015118 91 PITTISRSSGTTQGKPKFLPFNDELM 116 (413)
Q Consensus 91 pv~~f~~TSGTT~G~~K~IP~T~~~~ 116 (413)
.+.+...||||| |.||-|..|...+
T Consensus 187 d~~~il~TSGTT-G~PK~v~~s~~~~ 211 (579)
T PLN03102 187 DPISLNYTSGTT-ADPKGVVISHRGA 211 (579)
T ss_pred CcEEEEeCCcCC-CCCCEEEEecHHH
Confidence 345789999999 9999999998753
No 96
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=95.91 E-value=0.064 Score=62.12 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=23.2
Q ss_pred CCCcceeecccccCCCCcccccCchHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
++.+.+...||||| |+||-+..|++.+-
T Consensus 792 ~~d~a~i~~TSGTT-G~PKgv~~sh~~~~ 819 (1140)
T PRK06814 792 PDDPAVILFTSGSE-GTPKGVVLSHRNLL 819 (1140)
T ss_pred CCCcEEEEECCCcc-CCCcEEEecHHHHH
Confidence 34456889999999 99999999998753
No 97
>PRK06178 acyl-CoA synthetase; Validated
Probab=95.81 E-value=0.12 Score=54.91 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=23.0
Q ss_pred CCCcceeecccccCCCCcccccCchHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
.+-+.+...||||| |.||-+..|...+-
T Consensus 208 ~~~~a~i~~TSGTT-G~PK~v~~t~~~~~ 235 (567)
T PRK06178 208 LDALAALNYTGGTT-GMPKGCEHTQRDMV 235 (567)
T ss_pred CCCeEEEEeCCCCC-CCCceEEeccHHHH
Confidence 34456889999999 99999999998653
No 98
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=95.68 E-value=0.065 Score=58.30 Aligned_cols=23 Identities=39% Similarity=0.287 Sum_probs=19.9
Q ss_pred cceeecccccCCCCcccccCchHH
Q 015118 92 ITTISRSSGTTQGKPKFLPFNDEL 115 (413)
Q Consensus 92 v~~f~~TSGTT~G~~K~IP~T~~~ 115 (413)
+.+...||||| |+||-+..|...
T Consensus 265 ~a~ilyTSGTT-G~PKgV~~sh~~ 287 (655)
T PRK03584 265 PLWILYSSGTT-GLPKCIVHGHGG 287 (655)
T ss_pred cEEEEecCCCC-CCCceEEECccH
Confidence 45788899999 999999999864
No 99
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=95.49 E-value=0.075 Score=56.09 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=23.7
Q ss_pred CCCcceeecccccCCCCcccccCchHHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
++.+.+...||||| |+||-+..|.+.+-.
T Consensus 151 ~~~~a~i~~TSGtT-G~PKgv~~s~~~~~~ 179 (545)
T PRK07768 151 EDDLALMQLTSGST-GSPKAVQITHGNLYA 179 (545)
T ss_pred CCCEEEEEeCCCCC-CCCceEEEcHHHHHH
Confidence 44456888999999 999999999987633
No 100
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=95.38 E-value=0.077 Score=55.28 Aligned_cols=23 Identities=35% Similarity=0.216 Sum_probs=18.5
Q ss_pred cceeecccccCCCCcccccCchHH
Q 015118 92 ITTISRSSGTTQGKPKFLPFNDEL 115 (413)
Q Consensus 92 v~~f~~TSGTT~G~~K~IP~T~~~ 115 (413)
+.+...||||| |+||-+..+...
T Consensus 142 ~a~i~~TSGtT-G~PK~v~~~~~~ 164 (502)
T PRK08276 142 GADMLYSSGTT-GRPKGIKRPLPG 164 (502)
T ss_pred ceEEEECCCCC-CCCceEEEccCC
Confidence 45778899999 999999776554
No 101
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=95.31 E-value=0.16 Score=53.63 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=19.7
Q ss_pred cceeecccccCCCCcccccCchHH
Q 015118 92 ITTISRSSGTTQGKPKFLPFNDEL 115 (413)
Q Consensus 92 v~~f~~TSGTT~G~~K~IP~T~~~ 115 (413)
+.+...||||| |.||-+..|.+.
T Consensus 179 ~~~i~~TSGTT-G~PKgv~~s~~~ 201 (542)
T PRK06018 179 AAGMCYTSGTT-GDPKGVLYSHRS 201 (542)
T ss_pred eeeEEecCCCC-CCCcEEEEechh
Confidence 45677899999 999999999875
No 102
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]
Probab=94.28 E-value=0.035 Score=58.73 Aligned_cols=29 Identities=28% Similarity=0.275 Sum_probs=21.6
Q ss_pred CcccCCCcceeecccccCCCCcccccCchHH
Q 015118 85 PILTGKPITTISRSSGTTQGKPKFLPFNDEL 115 (413)
Q Consensus 85 ~vl~~~pv~~f~~TSGTT~G~~K~IP~T~~~ 115 (413)
.+...+|. +|+.||||| |-||--=+|..-
T Consensus 238 ~~~~~s~~-lyIYTSGTT-GLPKaAvith~r 266 (649)
T KOG1179|consen 238 GLTFRSPL-LYIYTSGTT-GLPKAAVITHLR 266 (649)
T ss_pred Ccccccee-EEEEcCCCC-CCCHHHHHHHHH
Confidence 44456665 999999999 889876666543
No 103
>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]
Probab=92.29 E-value=0.15 Score=55.50 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=35.6
Q ss_pred cccceecCCchhhHhhhccCCCCC-cccCCCcceeecccccCCCCcccccCchHHHHH
Q 015118 62 CVPLVTHEDLQPYIQRIIDGDISP-ILTGKPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 62 ~vPi~~Yed~~pyi~r~~~Ge~~~-vl~~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
.|++-+|+++..-=+ .+..... --.++-+.....||||| |.||=.=.|++.+-.
T Consensus 228 gv~v~S~~e~~~lG~--~~~~~~~~~p~p~d~atI~yTSGTT-G~PKGVMLTH~Niv~ 282 (691)
T KOG1256|consen 228 GVEVYSWDEFEELGK--KNQRKPRVPPKPDDLATICYTSGTT-GNPKGVMLTHRNIVS 282 (691)
T ss_pred CeEEEEHHHHHhhcc--cccCCCCCCCCccceEEEEEcCCCC-CCCceEEEeccceee
Confidence 488888888875432 1111111 22455566778899999 999999999886533
No 104
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=91.76 E-value=0.99 Score=48.45 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=35.6
Q ss_pred CCcceeeeeccch--hhHHHHHhhhhcCCCCceecccCCCcc--ccccccCCCC-CCcceee
Q 015118 293 PNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEG--WIGANVNPSL-PPELATF 349 (413)
Q Consensus 293 P~L~~i~~~~~g~--~~~y~~~l~~~~~~vpi~~~~Y~aSEg--~i~i~~~~~~-~~~~~~~ 349 (413)
|+++.|. ++|+ ...-.+++++.+|...+. .+||-||. .++++.+... .++..+.
T Consensus 299 ~sl~~v~--~gga~~~~~~~~~~~~~l~~~~v~-q~YGmTE~~~~~~~~~~~~e~k~~svG~ 357 (537)
T KOG1176|consen 299 SSLRSVL--SGGAPLSPATLEKVKERLPNVTVI-QGYGMTEAGGLITSNDWGPERKPGSVGR 357 (537)
T ss_pred CccEEEE--ecCCCCCHHHHHHHHHhCCCceEE-EeeccccccCceeecCCCccCcccccCc
Confidence 4566333 3333 356677888889866776 99999998 5777777663 3444444
No 105
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=89.78 E-value=0.54 Score=48.01 Aligned_cols=85 Identities=15% Similarity=0.275 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHHHh-cccHHHHHhc----CCCCCCCcccccccccceecCCchhhHhhhccCCCCCcccCCCcceee
Q 015118 22 KDAERIQRETLRKILEE-NASAEYLQNL----GLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTIS 96 (413)
Q Consensus 22 ~~~~~~Q~~~L~~iL~~-~~~T~ygr~~----gf~~I~t~edFr~~vPi~~Yed~~pyi~r~~~Ge~~~vl~~~pv~~f~ 96 (413)
++-++...+.++++.+. +++++.+|++ |++ .+++++.+ +|..--.-++. ..+.... .+.+....
T Consensus 27 ~e~~~l~~~~~~~~~~~q~~~~~~Yr~~~~~~~~~--~~v~~~~d-IP~lPi~~FK~--~~L~S~~------~e~~~~~~ 95 (365)
T PF04443_consen 27 EEKEELFLALALELFRYQYEHNPPYRKYCDALGFD--EDVKDLED-IPFLPIRFFKE--HELLSVP------EEEVEKVF 95 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCC--cccccHHH-CCcchHHHHhh--ceeeecC------hhhheeEE
Confidence 33445555666666664 8899999887 565 44555552 66666555553 2222222 33466789
Q ss_pred cccccCCCCcccccCchHHHHH
Q 015118 97 RSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 97 ~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
.||||| |.+-.|...+.....
T Consensus 96 tSSGTt-G~~S~i~~D~~t~~~ 116 (365)
T PF04443_consen 96 TSSGTT-GQPSRIFRDRETAER 116 (365)
T ss_pred ECCCCC-CCCcEEEECHHHHHH
Confidence 999998 776677777665543
No 106
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.10 E-value=0.28 Score=50.31 Aligned_cols=84 Identities=15% Similarity=0.242 Sum_probs=51.0
Q ss_pred hHHHHHhhhhcCCCCceecccCCCccccccc-cCCCCCC----cceeeeeecCCceeeeeeccccCCCCcccccCCcccc
Q 015118 307 EHYLKKLRHYAGDLPLMSADYGSSEGWIGAN-VNPSLPP----ELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVG 381 (413)
Q Consensus 307 ~~y~~~l~~~~~~vpi~~~~Y~aSEg~i~i~-~~~~~~~----~~~~~~l~p~~~ffEFip~~~~e~~~~~~~~~~~~l~ 381 (413)
..-+++++..+ ++.++ -.+|-.||.+..- +| +|+ +..+..|.|+.- .-=+| + +.+.
T Consensus 319 ~~~Arrv~~~l-gC~LQ-QVFGMAEGLvnyTRLD--Dp~E~i~~TQGrPlsP~DE---vrvvD--~--------dg~p-- 379 (542)
T COG1021 319 ATLARRVPAVL-GCQLQ-QVFGMAEGLVNYTRLD--DPPEIIIHTQGRPLSPDDE---VRVVD--A--------DGNP-- 379 (542)
T ss_pred HHHHhhchhhh-CchHH-HHhhhhhhhhcccccC--CchHheeecCCCcCCCcce---eEEec--C--------CCCC--
Confidence 55566777767 44666 7778888875432 22 112 112344444431 11122 1 2233
Q ss_pred ceeeeecceEEEEE---eeccceee--------------eeeccceec
Q 015118 382 LTEVKVGEEYEIIV---TNVAGMKM--------------SYTNNFLIA 412 (413)
Q Consensus 382 ~~ele~G~~YelVv---Tt~~GLyR--------------Y~~gDvv~~ 412 (413)
|.+||..+|.. =|..|.|| |++||+|+.
T Consensus 380 ---v~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~ 424 (542)
T COG1021 380 ---VAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRR 424 (542)
T ss_pred ---CCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEe
Confidence 68899999887 47888888 899999975
No 107
>PRK07868 acyl-CoA synthetase; Validated
Probab=87.16 E-value=1.2 Score=51.39 Aligned_cols=37 Identities=5% Similarity=0.167 Sum_probs=26.1
Q ss_pred CCcceeeeeccchh-hHHHHHhhhhcCCCCceecccCCCccc
Q 015118 293 PNAKYLSGIMTGSM-EHYLKKLRHYAGDLPLMSADYGSSEGW 333 (413)
Q Consensus 293 P~L~~i~~~~~g~~-~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 333 (413)
+.|+++ .+|++ ....+++++.+|+++++ .+||.||+.
T Consensus 720 ~slr~~---~g~gl~~~l~~~~~~~~~~~~l~-~~YG~TE~~ 757 (994)
T PRK07868 720 HPVRLF---IGSGMPTGLWERVVEAFAPAHVV-EFFATTDGQ 757 (994)
T ss_pred CceEEE---ecCCCCHHHHHHHHHHhCchhee-eeeeccccc
Confidence 456633 34554 45557777778878888 899999984
No 108
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=86.91 E-value=0.89 Score=46.62 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=35.6
Q ss_pred CCcccccccccceecCCchhhHhhhccCCCCCcccCCCcceeecccccCCCCcccccCchHHHHH
Q 015118 54 TDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 54 ~t~edFr~~vPi~~Yed~~pyi~r~~~Ge~~~vl~~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
++.|||--.. ..+..|+|=+.++.+ . ...+...||||| |+||-+..|.+.+..
T Consensus 70 ~~~~~~~~~~-----~~~~~~~~~~~~~~~-----~-~~~~i~~TSGTT-G~PKgV~~sh~~l~~ 122 (386)
T TIGR02372 70 TGTEDYLLVR-----RRIGEWVDLIAHHST-----P-TARFTFATSGST-GTPKPVTHSWAALLS 122 (386)
T ss_pred cchhhhhhhh-----ccHHHHHHHHHhcCC-----C-CceEEEECCCCC-CCCceeEeeHHHHHH
Confidence 4456665222 256777777766552 1 234667899999 999999999987643
No 109
>PRK13391 acyl-CoA synthetase; Provisional
Probab=85.07 E-value=1.7 Score=45.41 Aligned_cols=35 Identities=11% Similarity=0.213 Sum_probs=23.5
Q ss_pred Ccceeeeeccchh---hHHHHHhhhhcCCCCceecccCCCccc
Q 015118 294 NAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGW 333 (413)
Q Consensus 294 ~L~~i~~~~~g~~---~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 333 (413)
+++ .+.+|+. ....+++++.++ .+++ ..||+||+.
T Consensus 276 ~l~---~~~~gg~~~~~~~~~~~~~~~g-~~v~-~~YG~tE~~ 313 (511)
T PRK13391 276 SLE---VAIHAAAPCPPQVKEQMIDWWG-PIIH-EYYAATEGL 313 (511)
T ss_pred cee---EEEEccCCCCHHHHHHHHHHcC-Ccee-eeecccccc
Confidence 666 4454442 445566777774 5666 999999994
No 110
>PRK13390 acyl-CoA synthetase; Provisional
Probab=84.06 E-value=3.3 Score=43.04 Aligned_cols=19 Identities=42% Similarity=0.441 Sum_probs=15.9
Q ss_pred ceeecccccCCCCcccccCc
Q 015118 93 TTISRSSGTTQGKPKFLPFN 112 (413)
Q Consensus 93 ~~f~~TSGTT~G~~K~IP~T 112 (413)
.+...||||| |.||-+..+
T Consensus 151 a~i~~TSGTT-G~PKgV~~~ 169 (501)
T PRK13390 151 AVMLYSSGTT-GFPKGIQPD 169 (501)
T ss_pred EEEEeCCCCC-CCCCEEEee
Confidence 4778899999 999998743
No 111
>PRK07798 acyl-CoA synthetase; Validated
Probab=83.75 E-value=2.8 Score=43.66 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.6
Q ss_pred eeecccccCCCCcccccCchHHH
Q 015118 94 TISRSSGTTQGKPKFLPFNDELM 116 (413)
Q Consensus 94 ~f~~TSGTT~G~~K~IP~T~~~~ 116 (413)
+...||||| |.||-+.+|.+.+
T Consensus 167 ~i~~TSGTT-G~PK~v~~s~~~~ 188 (533)
T PRK07798 167 YLLYTGGTT-GMPKGVMWRQEDI 188 (533)
T ss_pred EEEECCCCC-CCCcEEEEecHHH
Confidence 678899999 9999999999875
No 112
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=81.42 E-value=1.4 Score=43.85 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=23.2
Q ss_pred CCcceeecccccCCCCcccccCchHHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
+.+.+...||||| |+||-+..|.+.+..
T Consensus 35 ~d~a~il~TSGTT-G~PKgv~~s~~~l~~ 62 (358)
T PRK07824 35 DDVALVVATSGTT-GTPKGAMLTAAALTA 62 (358)
T ss_pred CCeEEEEeCCCCC-CCCCEEEecHHHHHH
Confidence 3456889999999 999999999987644
No 113
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=78.35 E-value=2.1 Score=44.49 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=21.8
Q ss_pred CCcceeecccccCCCCcccccCchHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
+...+...||||| |.||-+..|.+.+-
T Consensus 120 ~~~~~i~~TSGTT-G~PKgV~~t~~~l~ 146 (452)
T PRK07445 120 ETGWIMIPTGGSS-GQIRFAIHTWETLT 146 (452)
T ss_pred CCcEEEEeCCCCC-CCCcEEEechHHHH
Confidence 3445667799999 99999999988753
No 114
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=75.23 E-value=2.7 Score=43.18 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=23.5
Q ss_pred CCCcceeecccccCCCCcccccCchHHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
++.+.+...||||| |+||-+..|.+.+-.
T Consensus 134 ~~~~a~i~~TSGTT-G~PKgv~~s~~~~~~ 162 (458)
T PRK09029 134 PQRLATMTLTSGST-GLPKAAVHTAQAHLA 162 (458)
T ss_pred CCCeEEEEECCCCC-CCCCEEEEeHHHHHH
Confidence 34456889999999 999999999987543
No 115
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=74.64 E-value=3.1 Score=43.79 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=23.0
Q ss_pred CCcceeecccccCCCCcccccCchHHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
+-+.+...||||| |+||-+..|.+.+-.
T Consensus 152 ~d~a~i~~TSGTT-G~PKgV~~th~~~~~ 179 (525)
T PRK05851 152 GGPAVLQGTAGST-GTPRTAILSPGAVLS 179 (525)
T ss_pred CCeEEEEeCCCCC-CCCcEEEecHHHHHH
Confidence 3456888999999 999999999987543
No 116
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=69.81 E-value=4.7 Score=43.60 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=22.6
Q ss_pred CCcceeecccccCCCCcccccCchHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
+.+.+...||||| |+||-+..|.+.+-
T Consensus 180 ~d~a~i~~TSGTT-G~PKgV~~sh~~l~ 206 (631)
T PRK07769 180 DTIAYLQYTSGST-RIPAGVQITHLNLP 206 (631)
T ss_pred CCeEEEEeCCCCC-CCCcEEEEcHHHHH
Confidence 4456888999999 99999999988754
No 117
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=69.80 E-value=7.6 Score=40.27 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=21.6
Q ss_pred CCcceeeeeccchh---hHHHHHhhhhcCCCCceecccCCCccc
Q 015118 293 PNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGW 333 (413)
Q Consensus 293 P~L~~i~~~~~g~~---~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 333 (413)
++|+ .+..|+. ..-.+++++ + ++++. ..||+||+.
T Consensus 230 ~~l~---~i~~gG~~l~~~~~~~~~~-~-~~~l~-~~YG~TE~~ 267 (452)
T PRK07445 230 AQFR---TILLGGAPAWPSLLEQARQ-L-QLRLA-PTYGMTETA 267 (452)
T ss_pred hcce---EEEECCccCCHHHHHHHHh-c-CCeEe-cCcchhhhc
Confidence 5677 4455553 233344444 3 67877 999999973
No 118
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=67.56 E-value=8.1 Score=41.74 Aligned_cols=37 Identities=24% Similarity=0.419 Sum_probs=22.0
Q ss_pred CCcceeeeeccchh---hHHHHHhhhhcC-----CCCceecccCCCccc
Q 015118 293 PNAKYLSGIMTGSM---EHYLKKLRHYAG-----DLPLMSADYGSSEGW 333 (413)
Q Consensus 293 P~L~~i~~~~~g~~---~~y~~~l~~~~~-----~vpi~~~~Y~aSEg~ 333 (413)
++++ .+.+|+. ..-.+++++.|+ ..+++ .+||.||+.
T Consensus 306 ~~lr---~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~ 350 (631)
T PRK07769 306 SNVK---GLLNGSEPVSPASMRKFNEAFAPYGLPPTAIK-PSYGMAEAT 350 (631)
T ss_pred hhee---eEEeccCCCCHHHHHHHHHHHhhcCCChhhcc-cccchhhhe
Confidence 4566 4455553 334455555553 23466 999999984
No 119
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=66.99 E-value=3.5 Score=43.03 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=23.4
Q ss_pred CCCcceeecccccCCCCcccccCchHHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
++.+.+...||||| |+||-+..|...+.
T Consensus 172 ~~~~a~i~~TSGtT-G~PK~v~~t~~~l~ 199 (517)
T PRK08008 172 TDDTAEILFTSGTT-SRPKGVVITHYNLR 199 (517)
T ss_pred CCCeEEEEECCCCC-CCCcEEEEehHHHH
Confidence 34456889999999 99999999998763
No 120
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=66.65 E-value=6 Score=42.63 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=22.8
Q ss_pred CCcceeecccccCCCCcccccCchHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
+.+.+...||||| |+||-+..|.+.+-
T Consensus 193 ~d~a~i~yTSGTT-G~PKgV~~sh~~l~ 219 (612)
T PRK12476 193 DDVSHLQYTSGST-RPPVGVEITHRAVG 219 (612)
T ss_pred CceEEEEeCCCCC-CCCceEEeeHHHHH
Confidence 4456888999999 99999999998763
No 121
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=66.03 E-value=6 Score=41.67 Aligned_cols=28 Identities=21% Similarity=0.040 Sum_probs=20.5
Q ss_pred eeecceEEEEEeecc---cee---------eeeeccceec
Q 015118 385 VKVGEEYEIIVTNVA---GMK---------MSYTNNFLIA 412 (413)
Q Consensus 385 le~G~~YelVvTt~~---GLy---------RY~~gDvv~~ 412 (413)
+..|+..||+|+..+ |.| -|+|||++..
T Consensus 367 ~~~g~~GEl~v~g~~~~~GY~~~~~~~~~~~~~TGDl~~~ 406 (525)
T PRK05851 367 VAGREIGEIEIRGASMMSGYLGQAPIDPDDWFPTGDLGYL 406 (525)
T ss_pred CCCCCeEEEEEecCchhhccccCCccCCCCceeccceEEE
Confidence 677899999997632 333 3899998753
No 122
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=64.07 E-value=16 Score=38.09 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=17.6
Q ss_pred hHHHHHhhhhcCCCCceecccCCCccc
Q 015118 307 EHYLKKLRHYAGDLPLMSADYGSSEGW 333 (413)
Q Consensus 307 ~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 333 (413)
..-++++++.+ +++++ ..||+||+.
T Consensus 301 ~~~~~~~~~~~-~~~~~-~~YG~tE~~ 325 (517)
T PRK08008 301 DQEKDAFEERF-GVRLL-TSYGMTETI 325 (517)
T ss_pred HHHHHHHHHHh-CCeEE-eeccccccc
Confidence 33445555656 57888 899999984
No 123
>PRK05850 acyl-CoA synthetase; Validated
Probab=63.88 E-value=16 Score=38.71 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=22.5
Q ss_pred CCcceeecccccCCCCcccccCchHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELME 117 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~ 117 (413)
+-+.+...||||| |+||-+..|...+-
T Consensus 160 ~d~a~i~~TSGTT-G~PKgV~~sh~~l~ 186 (578)
T PRK05850 160 PSTAYLQYTSGST-RTPAGVMVSHRNVI 186 (578)
T ss_pred CCeEEEEeCCCCC-CCCceEEEeHHHHH
Confidence 3456889999999 99999999988753
No 124
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=62.17 E-value=4.6 Score=43.02 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=22.6
Q ss_pred CCCcceeecccccCCCCcccccCchHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELM 116 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~ 116 (413)
++.+.++..||||| |+||-+-.|.+.+
T Consensus 180 ~~~~a~i~~TSGTT-G~PKgv~~s~~~l 206 (576)
T PRK05620 180 ETTAAAICYSTGTT-GAPKGVVYSHRSL 206 (576)
T ss_pred ccceeEEEECCCCC-CCCceEEEEcHHH
Confidence 34566889999999 9999999998765
No 125
>PRK09192 acyl-CoA synthetase; Validated
Probab=61.67 E-value=7.1 Score=41.68 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=22.8
Q ss_pred CCcceeecccccCCCCcccccCchHHHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
+.+.+...||||| |.||-+..|.+.+-.
T Consensus 176 ~~~a~i~~TSGTT-G~PKgv~~sh~~~~~ 203 (579)
T PRK09192 176 DDIAYLQYSSGST-RFPRGVIITHRALMA 203 (579)
T ss_pred CCeEEEEecCCCC-CCCceEEeeHHHHHH
Confidence 3445778899999 999999999987644
No 126
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=61.01 E-value=10 Score=40.11 Aligned_cols=85 Identities=22% Similarity=0.150 Sum_probs=47.8
Q ss_pred HHHHHHHHHh--cccHHHHHhcCCCCCCCcccccccccce---ecCCch-----hhHhhhccCCCCCcccCCCcceeecc
Q 015118 29 RETLRKILEE--NASAEYLQNLGLNGRTDPESFKSCVPLV---THEDLQ-----PYIQRIIDGDISPILTGKPITTISRS 98 (413)
Q Consensus 29 ~~~L~~iL~~--~~~T~ygr~~gf~~I~t~edFr~~vPi~---~Yed~~-----pyi~r~~~Ge~~~vl~~~pv~~f~~T 98 (413)
-++|.+|.-. +++..=.|.+.|-+.+++--+-+-+|+- .|+|+- +.++.+..=+ .-+.+.+++ -.+.|
T Consensus 165 ~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~~~~Ga~~~sev~~~~s~~~~a~l~~~~-k~~~pdd~~-niQFT 242 (596)
T KOG1177|consen 165 YETLLEICPEVMRGDPGQLKSELLPELTHVILADEDHPLPGAFLLSEVLKAASKEERAKLADMS-KWLSPDDAV-NIQFT 242 (596)
T ss_pred HHHHHHhhHHhhcCCCccccccccccceEEEecCCCCcCCCceehHHHHHhcchHHHHHHHhhh-hhcCCCCce-EEEec
Confidence 5677777753 6776655556665555442222233332 233331 2222222212 233345555 78999
Q ss_pred cccCCCCcccccCchHHH
Q 015118 99 SGTTQGKPKFLPFNDELM 116 (413)
Q Consensus 99 SGTT~G~~K~IP~T~~~~ 116 (413)
|||| |.||-+-.|.-.+
T Consensus 243 SGTT-G~PKgatLsH~~~ 259 (596)
T KOG1177|consen 243 SGTT-GAPKGATLSHYNF 259 (596)
T ss_pred cCCC-CCCcceeeehhhh
Confidence 9999 9999999988654
No 127
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=60.34 E-value=17 Score=38.26 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=22.4
Q ss_pred CCCcceeecccccCCCCcccccCchHHH
Q 015118 89 GKPITTISRSSGTTQGKPKFLPFNDELM 116 (413)
Q Consensus 89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~ 116 (413)
++.+.+...||||| |.||-+.+|.+.+
T Consensus 175 ~~~~~~i~~TSGTT-G~PK~v~~s~~~~ 201 (539)
T PRK07008 175 ENQASSLCYTSGTT-GNPKGALYSHRST 201 (539)
T ss_pred cccceEEEECCCCC-CCCcEEEEecHHH
Confidence 44456889999999 9999999998764
No 128
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=58.62 E-value=5.7 Score=43.36 Aligned_cols=24 Identities=38% Similarity=0.238 Sum_probs=20.5
Q ss_pred CcceeecccccCCCCcccccCchHH
Q 015118 91 PITTISRSSGTTQGKPKFLPFNDEL 115 (413)
Q Consensus 91 pv~~f~~TSGTT~G~~K~IP~T~~~ 115 (413)
-+.+...||||| |+||-+..|...
T Consensus 265 d~~~ilyTSGTT-G~PKgV~~sh~~ 288 (652)
T TIGR01217 265 HPLWILFSSGTT-GLPKCIVHSAGG 288 (652)
T ss_pred CCEEEEEcCCCC-CCCCeEEecccH
Confidence 345889999999 999999999864
No 129
>PLN03052 acetate--CoA ligase; Provisional
Probab=58.34 E-value=6.2 Score=43.93 Aligned_cols=26 Identities=42% Similarity=0.583 Sum_probs=21.5
Q ss_pred CCcceeecccccCCCCcccccCchHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELM 116 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~ 116 (413)
+-+.+...||||| |+||-|..|...+
T Consensus 356 d~~a~IlyTSGTT-G~PKgVv~sh~~~ 381 (728)
T PLN03052 356 EAFTNILFSSGTT-GEPKAIPWTQLTP 381 (728)
T ss_pred CCcEEEEecCCCC-CCCceEEECchHH
Confidence 3345888999999 9999999998754
No 130
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=58.14 E-value=6.2 Score=41.65 Aligned_cols=38 Identities=13% Similarity=0.277 Sum_probs=24.2
Q ss_pred CCCcceeeeeccch--hhHHHHHhhhhcCCCCceecccCCCccc
Q 015118 292 FPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGW 333 (413)
Q Consensus 292 WP~L~~i~~~~~g~--~~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 333 (413)
.++|+.+ +.+|. ....++++++.+ +++++ .+||+||+.
T Consensus 292 ~~~l~~~--~~~G~~l~~~~~~~~~~~~-~~~l~-~~YG~tE~~ 331 (539)
T PRK07008 292 FSTLRRT--VIGGSACPPAMIRTFEDEY-GVEVI-HAWGMTEMS 331 (539)
T ss_pred cccceEE--EEcCCCCCHHHHHHHHHHh-CCcee-ccccccccc
Confidence 3566632 33333 244556666667 57888 899999984
No 131
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=58.02 E-value=25 Score=37.35 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=23.0
Q ss_pred Ccceeeeeccchh---hHHHHHhhhhcCCCCceecccCCCccc
Q 015118 294 NAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGW 333 (413)
Q Consensus 294 ~L~~i~~~~~g~~---~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 333 (413)
+++ ++..|+. ..-.+++++.+ +++++ ..||.||+.
T Consensus 299 ~l~---~~~~gG~~~~~~~~~~~~~~~-~~~~~-~~YG~tE~~ 336 (576)
T PRK05620 299 SLQ---EIYVGGSAVPPILIKAWEERY-GVDVV-HVWGMTETS 336 (576)
T ss_pred cee---EEEEcCCCCCHHHHHHHHHHh-CCcee-eeccccccc
Confidence 566 4555553 44445566656 57888 889999984
No 132
>PRK05850 acyl-CoA synthetase; Validated
Probab=56.22 E-value=7.1 Score=41.49 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=23.0
Q ss_pred CCcceeeeeccchh---hHHHHHhhhhc-----CCCCceecccCCCcccc
Q 015118 293 PNAKYLSGIMTGSM---EHYLKKLRHYA-----GDLPLMSADYGSSEGWI 334 (413)
Q Consensus 293 P~L~~i~~~~~g~~---~~y~~~l~~~~-----~~vpi~~~~Y~aSEg~i 334 (413)
++++ ++.+|+. ....+++.+.| ++++++ ..||.||+.+
T Consensus 288 ~~lr---~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~YG~tE~~~ 333 (578)
T PRK05850 288 GGVL---GIISGSERVHPATLKRFADRFAPFNLRETAIR-PSYGLAEATV 333 (578)
T ss_pred hhhe---eEEECcCCCCHHHHHHHHHHHHhcCcCccccc-Cccchhhhhh
Confidence 4566 6666663 33444555444 234566 8999999853
No 133
>PLN02479 acetate-CoA ligase
Probab=55.03 E-value=7.1 Score=41.53 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=19.9
Q ss_pred ceeecccccCCCCcccccCchHHH
Q 015118 93 TTISRSSGTTQGKPKFLPFNDELM 116 (413)
Q Consensus 93 ~~f~~TSGTT~G~~K~IP~T~~~~ 116 (413)
.++..||||| |+||-+.+|.+.+
T Consensus 198 ~~i~yTSGTT-G~PKgV~~sh~~~ 220 (567)
T PLN02479 198 IALGYTSGTT-ASPKGVVLHHRGA 220 (567)
T ss_pred eEEEECCCCC-CCCcEEEeccHHH
Confidence 3688999999 9999999998764
No 134
>PRK07798 acyl-CoA synthetase; Validated
Probab=53.64 E-value=6.8 Score=40.69 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=25.2
Q ss_pred CCcceeeeeccchh---hHHHHHhhhhcCCCCceecccCCCcc
Q 015118 293 PNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEG 332 (413)
Q Consensus 293 P~L~~i~~~~~g~~---~~y~~~l~~~~~~vpi~~~~Y~aSEg 332 (413)
++++ .+.+|+. ....+++++.++++++. ..||+||.
T Consensus 296 ~~l~---~i~~gG~~~~~~~~~~~~~~~~~~~~~-~~YG~tE~ 334 (533)
T PRK07798 296 SSLF---AIASGGALFSPSVKEALLELLPNVVLT-DSIGSSET 334 (533)
T ss_pred CceE---EEEECCCCCCHHHHHHHHHHcCCCeEE-eeeccccc
Confidence 4555 5565553 44455666777788888 99999996
No 135
>PRK08162 acyl-CoA synthetase; Validated
Probab=47.86 E-value=11 Score=39.69 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.2
Q ss_pred cceeecccccCCCCcccccCchHHH
Q 015118 92 ITTISRSSGTTQGKPKFLPFNDELM 116 (413)
Q Consensus 92 v~~f~~TSGTT~G~~K~IP~T~~~~ 116 (413)
+.+...||||| |+||-+.+|.+.+
T Consensus 184 ~~~i~~TSGTT-G~PKgv~~t~~~~ 207 (545)
T PRK08162 184 AIALNYTSGTT-GNPKGVVYHHRGA 207 (545)
T ss_pred eEEEEeCCCCC-CCCcEEEEecHHH
Confidence 34678899999 9999999998754
No 136
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=41.91 E-value=50 Score=36.05 Aligned_cols=36 Identities=8% Similarity=0.003 Sum_probs=21.3
Q ss_pred CCcceeeeeccchh---hHHHHHhhhhcC-CCCceecccCCCcc
Q 015118 293 PNAKYLSGIMTGSM---EHYLKKLRHYAG-DLPLMSADYGSSEG 332 (413)
Q Consensus 293 P~L~~i~~~~~g~~---~~y~~~l~~~~~-~vpi~~~~Y~aSEg 332 (413)
+.|+ .+.+|+. ....+.+++.++ ++++. ..||.||.
T Consensus 384 ~sLr---~i~~gGe~l~~~~~~~~~~~~~~~~~~~-~~yG~TE~ 423 (652)
T TIGR01217 384 SALQ---CVASTGSPLPPDGFRWVYDEIKADVWLA-SISGGTDI 423 (652)
T ss_pred hhee---EEEeecCCCCHHHHHHHHHHhCCCceEE-eccCHHHH
Confidence 4566 5555553 333344555553 45555 88999995
No 137
>PRK09192 acyl-CoA synthetase; Validated
Probab=38.15 E-value=45 Score=35.55 Aligned_cols=27 Identities=15% Similarity=-0.048 Sum_probs=19.0
Q ss_pred eeecceEEEEEeec---ccee-------------eeeecccee
Q 015118 385 VKVGEEYEIIVTNV---AGMK-------------MSYTNNFLI 411 (413)
Q Consensus 385 le~G~~YelVvTt~---~GLy-------------RY~~gDvv~ 411 (413)
+..|+..||+|+.. .|.| .|++||++.
T Consensus 406 ~~~g~~Gel~i~g~~~~~gY~~~~~~~~~~~~dgw~~TGDlg~ 448 (579)
T PRK09192 406 LPERVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGY 448 (579)
T ss_pred CCCCCEEEEEecCCchhhhhcCCccccccccCCceeeccceee
Confidence 46688889999763 2333 488999875
No 138
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=37.01 E-value=24 Score=28.06 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=15.0
Q ss_pred eeecceEEEEEeeccc--eeeeee
Q 015118 385 VKVGEEYEIIVTNVAG--MKMSYT 406 (413)
Q Consensus 385 le~G~~YelVvTt~~G--LyRY~~ 406 (413)
---|+.|+++|.+..| +|||.-
T Consensus 20 f~sgq~~D~~v~d~~g~~vwrwS~ 43 (82)
T PF12690_consen 20 FPSGQRYDFVVKDKEGKEVWRWSD 43 (82)
T ss_dssp ESSS--EEEEEE-TT--EEEETTT
T ss_pred eCCCCEEEEEEECCCCCEEEEecC
Confidence 3569999999999999 999863
No 139
>PRK13390 acyl-CoA synthetase; Provisional
Probab=35.41 E-value=19 Score=37.31 Aligned_cols=36 Identities=8% Similarity=0.168 Sum_probs=22.9
Q ss_pred CCcceeeeeccchh---hHHHHHhhhhcCCCCceecccCCCccc
Q 015118 293 PNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGW 333 (413)
Q Consensus 293 P~L~~i~~~~~g~~---~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 333 (413)
++++ .+++|+. ..-.+.+++.+ +.+++ ..||.||+.
T Consensus 270 ~~l~---~v~~~g~~~~~~~~~~~~~~~-~~~~~-~~YG~tE~~ 308 (501)
T PRK13390 270 SSLR---AVIHAAAPCPVDVKHAMIDWL-GPIVY-EYYSSTEAH 308 (501)
T ss_pred hhhh---eEEEcCCCCCHHHHHHHHHhc-CCcee-eeecccccC
Confidence 3566 4455553 33345566666 46777 899999984
No 140
>PF03533 SPO11_like: SPO11 homologue; InterPro: IPR004084 Spo11 is a meiosis-specific protein in yeast that covalently binds to DNA double-strand breaks (DSBs) during the early stages of meiosis []. These DSBs initiate homologous recombination, which is required for chromosomal segregation and generation of genetic diversity during meiosis. Mouse and human homologues of Spo11 have been cloned and characterised. The proteins are 82% identical and share ~25% identity with other family members. Mouse Spo11 has been localised to chromosome 2H4, and human SPO11 to chromosome 20q13.2-q13.3, a region amplified in some breast and ovarian tumours []. Similarity between SPO11 and archaebacterial TOP6A proteins points to evolutionary specialisation of a DNA-cleavage function for meiotic recombination []. Note that the yeast SPO11 protein shares far less similarity to other SPO11 proteins than the human and mouse homologues do to each other.; GO: 0003677 DNA binding, 0007131 reciprocal meiotic recombination
Probab=29.46 E-value=67 Score=22.18 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=19.4
Q ss_pred HHHHhHHHHHHHHHHHhhcCccc
Q 015118 226 HAFRTFELVWEELCDDIREGVLS 248 (413)
Q Consensus 226 ~~~~~le~~w~~l~~dI~~Gt~~ 248 (413)
++|+.|++|.+.|+.++++|.-.
T Consensus 10 SFf~vLdrHRasLlaal~~gggE 32 (43)
T PF03533_consen 10 SFFEVLDRHRASLLAALRRGGGE 32 (43)
T ss_pred HHHHHHHHHHHHHHHHHHccCCC
Confidence 45788999999999999998653
No 141
>PLN03052 acetate--CoA ligase; Provisional
Probab=27.12 E-value=1.4e+02 Score=33.17 Aligned_cols=37 Identities=16% Similarity=0.062 Sum_probs=21.5
Q ss_pred CCcceeeeeccchhhH---HHHHhhhhcCCCCceecccCCCccc
Q 015118 293 PNAKYLSGIMTGSMEH---YLKKLRHYAGDLPLMSADYGSSEGW 333 (413)
Q Consensus 293 P~L~~i~~~~~g~~~~---y~~~l~~~~~~vpi~~~~Y~aSEg~ 333 (413)
+.|+ ++.+||... -...+.+.++..|+. ..||.||..
T Consensus 471 ssLr---~i~s~Ge~l~~~~~~~~~~~~~~~~i~-~~yG~TE~~ 510 (728)
T PLN03052 471 SSIR---CFGSTGEASSVDDYLWLMSRAGYKPII-EYCGGTELG 510 (728)
T ss_pred hhee---EEEecCCCCCHHHHHHHHHhcCCCCeE-eeccChhhC
Confidence 5677 555555421 112334444445776 899999974
No 142
>PRK13391 acyl-CoA synthetase; Provisional
Probab=26.42 E-value=34 Score=35.64 Aligned_cols=18 Identities=50% Similarity=0.575 Sum_probs=14.8
Q ss_pred ceeecccccCCCCcccccC
Q 015118 93 TTISRSSGTTQGKPKFLPF 111 (413)
Q Consensus 93 ~~f~~TSGTT~G~~K~IP~ 111 (413)
.+...||||| |.||-+-.
T Consensus 157 a~il~TSGtT-G~PKgv~~ 174 (511)
T PRK13391 157 TDMLYSSGTT-GRPKGIKR 174 (511)
T ss_pred cEEEECCCCC-CCCCEEEE
Confidence 4678899999 99997764
No 143
>cd05830 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5 represented by Streptomyces avermitilis SAV4337. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=25.64 E-value=50 Score=28.55 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=23.0
Q ss_pred cceeeeecceEEEEEeeccceeeeeeccce
Q 015118 381 GLTEVKVGEEYEIIVTNVAGMKMSYTNNFL 410 (413)
Q Consensus 381 ~~~ele~G~~YelVvTt~~GLyRY~~gDvv 410 (413)
.|.+|++|. +|.|++..|-|+|++-++.
T Consensus 62 ~L~~l~~Gd--~i~v~~~~~~~~Y~V~~~~ 89 (137)
T cd05830 62 DLDKLRPGD--KIVVETADGWYTYVVRSSE 89 (137)
T ss_pred cHhhCCCCC--EEEEEECCeEEEEEEeEEE
Confidence 456678888 8888999999999998774
No 144
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.56 E-value=37 Score=35.31 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=22.1
Q ss_pred CCcceeecccccCCCCcccccCchHHH
Q 015118 90 KPITTISRSSGTTQGKPKFLPFNDELM 116 (413)
Q Consensus 90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~ 116 (413)
+.+.+|..|+||| |.||+||-|..-+
T Consensus 189 ~~vA~fqLSGGTT-GtPKLIPRtH~DY 214 (542)
T COG1021 189 GEVAFFQLSGGTT-GTPKLIPRTHNDY 214 (542)
T ss_pred CceEEEEecCCCC-CCCccccccccce
Confidence 3478999999999 9999999988643
No 145
>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=23.97 E-value=44 Score=36.13 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=34.4
Q ss_pred ChHhHHHHHHHhccCccccccccccCCCcceeeeeccchh--hHHHHHhhhhcCCCCceecccCCCcccccc
Q 015118 267 NPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSM--EHYLKKLRHYAGDLPLMSADYGSSEGWIGA 336 (413)
Q Consensus 267 ~p~rA~~L~~~~~~~~g~~gi~~~lWP~L~~i~~~~~g~~--~~y~~~l~~~~~~vpi~~~~Y~aSEg~i~i 336 (413)
|-...+++|+..+. +|+ -+.+||+ ++-.+++-..+=.+|+. -|||-||.+-|-
T Consensus 389 d~lVFkKIr~~lGG-------------~lR---~~LsGGapLS~dtQrF~nic~C~Pv~-qGYGLTEtca~~ 443 (678)
T KOG1180|consen 389 DALVFKKIRALLGG-------------NLR---YILSGGAPLSPDTQRFMNICFCCPVL-QGYGLTETCAAA 443 (678)
T ss_pred HHHHHHHHHHHhCC-------------ceE---EEEeCCCCCCHHHHHHHHHhcccccc-ccccccchhccc
Confidence 34456667776552 566 4556664 56666666554356988 999999986443
No 146
>PTZ00297 pantothenate kinase; Provisional
Probab=23.57 E-value=64 Score=39.08 Aligned_cols=21 Identities=5% Similarity=-0.040 Sum_probs=18.0
Q ss_pred cccccCCCCcccccCchHHHHH
Q 015118 97 RSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 97 ~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
.||||| |+||-...|.+.+-.
T Consensus 608 yTSGTT-G~PKGVmLTH~Nlla 628 (1452)
T PTZ00297 608 TTSASG-DGLAVVRVTHADVLR 628 (1452)
T ss_pred CCCCCC-cCCcEEEEeHHHHHH
Confidence 499999 999999999997643
No 147
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=23.05 E-value=1e+02 Score=29.13 Aligned_cols=69 Identities=19% Similarity=0.204 Sum_probs=48.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHH------------HHHhcccHHHHHhcCCCCCCCc-ccccccccceecCCchhhHhhhc
Q 015118 13 LIEEFETITKDAERIQRETLRK------------ILEENASAEYLQNLGLNGRTDP-ESFKSCVPLVTHEDLQPYIQRII 79 (413)
Q Consensus 13 ~~~~f~~~~~~~~~~Q~~~L~~------------iL~~~~~T~ygr~~gf~~I~t~-edFr~~vPi~~Yed~~pyi~r~~ 79 (413)
..++-+..+++.++.|++.|.. ||++..+++=-+.+.|+.+++. +.|.+.--+.+.+|=+.|.|++.
T Consensus 97 r~~r~~~~L~kLra~~rk~l~~LK~e~~y~aT~~ii~ky~e~~~~~~~~l~N~k~~k~~~~~~s~~~~~~~~~~w~D~V~ 176 (251)
T COG5415 97 RNNRRLRKLAKLRAIHRKKLEKLKEETHYNATSSIIQKYSEELNAKYQELNNLKTEKEKFKKESHVKKKEDSDAWFDKVI 176 (251)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccchhHHHHHHhhHHHHhhcccccccccCcccchHHHHHHH
Confidence 4455666677778888877754 4555555555566667777653 67887777889999999999997
Q ss_pred cC
Q 015118 80 DG 81 (413)
Q Consensus 80 ~G 81 (413)
+|
T Consensus 177 ~v 178 (251)
T COG5415 177 SV 178 (251)
T ss_pred HH
Confidence 64
No 148
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.53 E-value=95 Score=33.42 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=23.9
Q ss_pred cCCCcceeecccccCCCCcccccCchHHHHH
Q 015118 88 TGKPITTISRSSGTTQGKPKFLPFNDELMET 118 (413)
Q Consensus 88 ~~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~ 118 (413)
.++-..+...||||| |+||-.-++.+....
T Consensus 364 ~~~~~ayiiytsgst-g~Pkgv~~~h~~~~~ 393 (642)
T COG1020 364 LGDALAYIIYTSGST-GQPKGVRIEHRALAN 393 (642)
T ss_pred CCCCeEEEEEccCCC-CCCCCceecCHHHHH
Confidence 445677999999998 999988887776544
No 149
>cd06166 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5, represented by Clostridium perfringens CPE2315. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=22.24 E-value=62 Score=27.53 Aligned_cols=30 Identities=30% Similarity=0.356 Sum_probs=23.4
Q ss_pred ccceeeeecceEEEEEeeccceeeeeecccee
Q 015118 380 VGLTEVKVGEEYEIIVTNVAGMKMSYTNNFLI 411 (413)
Q Consensus 380 l~~~ele~G~~YelVvTt~~GLyRY~~gDvv~ 411 (413)
-.|++|++|.. |.|++..+-|+|++-++-+
T Consensus 60 ~~L~~l~~Gd~--v~v~~~~~~~~Y~V~~~~~ 89 (126)
T cd06166 60 NRLDEVEKGDE--IKVTTKNGTYKYKITSIFV 89 (126)
T ss_pred CChHHCCCCCE--EEEEECCEEEEEEEEEEEE
Confidence 35777899975 7778889999999876644
Done!